Query 046182
Match_columns 898
No_of_seqs 114 out of 132
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1877 Putative transmembrane 100.0 4E-112 8E-117 988.0 31.0 658 12-830 1-755 (819)
2 KOG1877 Putative transmembrane 93.8 0.29 6.3E-06 60.5 10.3 193 218-457 233-476 (819)
3 PF12348 CLASP_N: CLASP N term 80.3 6.6 0.00014 40.9 8.1 140 176-335 69-212 (228)
4 PF01602 Adaptin_N: Adaptin N 73.4 21 0.00046 41.6 10.6 213 175-412 282-522 (526)
5 PF12348 CLASP_N: CLASP N term 67.3 23 0.0005 36.9 8.2 124 281-413 71-205 (228)
6 PF10165 Ric8: Guanine nucleot 48.1 4.1E+02 0.009 31.5 15.0 145 175-327 47-216 (446)
7 KOG1992 Nuclear export recepto 48.0 5.7E+02 0.012 33.1 16.3 243 240-588 548-795 (960)
8 KOG1241 Karyopherin (importin) 43.2 3.4E+02 0.0073 34.7 13.3 130 207-354 479-613 (859)
9 PF10508 Proteasom_PSMB: Prote 40.4 1.2E+02 0.0027 36.3 9.3 133 183-333 183-323 (503)
10 PF08623 TIP120: TATA-binding 34.9 1.7E+02 0.0038 30.5 8.1 103 230-338 53-156 (169)
11 PF01602 Adaptin_N: Adaptin N 34.4 3.6E+02 0.0077 31.6 11.7 141 179-344 356-498 (526)
12 PF11864 DUF3384: Domain of un 33.2 7.5E+02 0.016 29.4 14.1 112 234-352 244-360 (464)
13 PF02444 HEV_ORF1: Hepatitis E 30.4 18 0.0004 34.3 0.2 15 11-25 13-28 (114)
14 cd03572 ENTH_epsin_related ENT 29.3 5.7E+02 0.012 25.4 10.3 113 203-327 4-117 (122)
15 PRK09687 putative lyase; Provi 27.1 5.9E+02 0.013 28.3 11.2 136 235-410 18-153 (280)
16 cd00020 ARM Armadillo/beta-cat 26.5 1.4E+02 0.0031 26.7 5.4 109 200-328 8-119 (120)
17 KOG0211 Protein phosphatase 2A 24.8 4.9E+02 0.011 33.3 11.0 90 313-413 531-624 (759)
18 PRK13347 coproporphyrinogen II 23.0 61 0.0013 38.2 2.8 32 9-40 57-91 (453)
19 KOG2171 Karyopherin (importin) 22.6 4.8E+02 0.01 34.6 10.4 154 185-353 828-985 (1075)
20 PF03224 V-ATPase_H_N: V-ATPas 20.6 3.6E+02 0.0077 30.1 8.1 86 237-338 102-187 (312)
No 1
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=100.00 E-value=3.8e-112 Score=988.02 Aligned_cols=658 Identities=25% Similarity=0.348 Sum_probs=564.4
Q ss_pred CCCcccccCCCcccCCChhHHHHHHHhhhcCCCCCCC---------------------chhhhhh------------hHH
Q 046182 12 CGSMCVCCPALRSRSRQPVKRYKKLLAEIFPKSIADS---------------------TYTHNIE------------KFV 58 (898)
Q Consensus 12 C~~lC~cCpaLR~rSrqpvKRYKkLva~IFP~~p~~g---------------------kI~~yLe------------g~V 58 (898)
|+||||||||||| |||||||+||||+|||| |||+||+ |+|
T Consensus 1 ~~s~c~cc~alR~-------RyKkLV~~iFPr~~e~gpn~s~m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v 73 (819)
T KOG1877|consen 1 CESMCCCCPALRP-------RYKKLVDNIFPRSPEDGPNKSKMEKLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSV 73 (819)
T ss_pred CCceeeecHHHHH-------HHHHHHHHhCCCCCCCCcccccHHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcch
Confidence 8999999999999 99999999999999999 9999999 999
Q ss_pred HHHHH------Hhh--hh-hH-H-------hHhhcCcchhhhhhhhHHHHhhhcccccc-------cchhhhhhh-hcCC
Q 046182 59 KKVCK------LAC--EN-GV-E-------HRRSLRASSLQCLSAMVWFMAEFSCIFAD-------FDEIVSATL-DNYE 113 (898)
Q Consensus 59 kIvck------lgC--qt-L~-e-------kll~lr~a~LQ~Lstmv~Fm~efS~I~~d-------~D~~VS~fl-m~y~ 113 (898)
+|+|+ ++| |. +| + |+|+...+.+|+||++ +|++ |++|++| |||||++|. |||+
T Consensus 74 ~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~-sf~~-F~~i~~d~~sy~~~yd~Fi~kf~~l~he 151 (819)
T KOG1877|consen 74 KIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTN-SFVK-FANIEEDGPSYHRNYDFFISKFSSLCHE 151 (819)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhh-HHHH-HHhhcccCchhhhhhHHHHHHHHHHhhc
Confidence 99977 899 43 44 2 8999999999999999 9999 9999999 899999999 9999
Q ss_pred CCCCCCcccccCCCCCcccceeeeccCCCC--------CCCCCCcCCC--cccCCCCCCC--------CCCCC-CccccC
Q 046182 114 PDTCSEDDDERGEPHHNWVDEVVRCEGRGA--------AAGSDTGPSS--MMIRPRPEKK--------DPSAL-TREEVE 174 (898)
Q Consensus 114 ~~~~~~~~~~~r~~g~~gvqgVvrk~~~d~--------~~m~kivPsl--nmq~~~~~~~--------~~~~~-~~ee~e 174 (898)
. .+.+..+..|.+|++||+||||+++.|+ +||++|||++ |||......+ ..... -.+...
T Consensus 152 ~-~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~~~ 230 (819)
T KOG1877|consen 152 R-GDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAAGDKTS 230 (819)
T ss_pred c-cchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCccccccCCccc
Confidence 6 5666678899999999999999997765 8999999999 9993331111 11222 233344
Q ss_pred ChHHHHHHHHHHHHHHhHhhhccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHH--hcCCceehHHHHHhhhccC
Q 046182 175 TPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLME--TSGNQQLILASVIHHLDHK 252 (898)
Q Consensus 175 nP~~wA~vCLrnma~lareatTiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMe--qSgnshllLs~LikHLDhK 252 (898)
+|++||++|+|||+..|+++||||+||+|||.|||.|.+|.|+||||++||+ ++|+ |.|++|+|++.||+|||||
T Consensus 231 ~p~vla~~cl~~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~---~vi~~iq~q~s~~v~~~li~hLd~~ 307 (819)
T KOG1877|consen 231 DPKVLAERCLRELLGRAKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFK---IVIYLIQRQYSYFVIQELINHLDNK 307 (819)
T ss_pred CcchhHHHHHHHhhccccccchHHHHHHHHHhccccceeecCCCccchHHHH---HHHHHHhhccchHHHHHHHHHHHhh
Confidence 6999999999999999999999999999999999999999999999999999 7777 8889999999999999999
Q ss_pred C-CCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCcc------chhHHHHHHHHHHHHHH
Q 046182 253 N-VSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQ------ESNLNILLRNSIEDCLL 325 (898)
Q Consensus 253 n-v~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~------~~~~n~~lQ~Avi~cLg 325 (898)
+ +++.|.+++.||.|...+++..+ -+|+++.+||||+||||+|++++ ++.+.+ +...|..+|+++++.++
T Consensus 308 ~~~~~~~r~~~~iv~~~~~~i~~~~--v~ps~l~i~n~l~rhLR~si~~s-~~~~~~~~~~~~~~~~e~~~q~~li~~~~ 384 (819)
T KOG1877|consen 308 KLVAKKPRLGLSIVLVSIALIAATS--VGPSVLIIFNDLLRHLRKSISFS-DDGNIGLETDNGNYMIEAVVQEALIQLTK 384 (819)
T ss_pred cccccCccccchhHHHHHHHHHhcc--cchHHHHHHHHHHHHHHhhcccc-ccccCCchhhhhHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999887777542 23777777999999999999998 333444 36689999999999999
Q ss_pred HHhccCCCCchhHHHHHHhhccCCCCcccccchhhHHHHHHHH-HHHHhhhccC------CCCCcHHHHHHHHHHccCCC
Q 046182 326 EIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHM-ISVASISSRS------QQVFPEALLVQILKAMLHPN 398 (898)
Q Consensus 326 q~a~kv~D~qpi~dMMaImLenIp~~~~vartti~a~~~ta~i-l~Sl~~vs~~------~kaFPeall~qLL~amlhpD 398 (898)
.|++.+||||+++.||++| .||| ..+|..+.+..++|.| +++++.++.+ ..+||++||+.||...+.+|
T Consensus 385 ~~~~~~P~~q~~~vm~~~~-~~v~---~~sk~~~~~~~liq~~~~~s~L~~s~s~~i~~~~l~~~sS~L~sll~~~l~r~ 460 (819)
T KOG1877|consen 385 KFANTLPDYQKMAVMLFIM-SKVP---DLSKPSILGELLIQAMLLKSLLSVSTSYQIVSVALAFPSSFLDSLLSTALMRD 460 (819)
T ss_pred hhcccCchHHHHHHHHhhc-cccc---ccCCccccHHHHHHHHHHHHHhhhhhcceeeeehhhccHHHhhhhhhhhcCcc
Confidence 9999999999999999999 8888 5567777788899999 9999999864 44689999999999999999
Q ss_pred chhhHHHHHHHHHhhcCCCCCCcccccccccCCCCCccccccccccchhhHHH--HHhhhhcccCccccccccccccccc
Q 046182 399 VETRVGAHQIFSVLLIPSPINQHHEVASVRSGYLHEPQQWHSNAASTTSITAL--LEKLRRDKNGVKMDKSRYNVHDEIR 476 (898)
Q Consensus 399 ~EtRv~ah~Ifs~lL~ps~~~p~~~~~~~~~~~~~d~~~~~s~~~s~~s~~~~--~dkL~~eK~s~q~~~~~~~~~~~~~ 476 (898)
.+.|+...+|||.+.++|.|...+ +.++. ..+. ..+|+++|++++
T Consensus 461 ~~~~~~t~eil~sl~d~~~n~a~l------------------~~v~~--~~~~~~~~~ls~~~~s~~------------- 507 (819)
T KOG1877|consen 461 AELRLVTLEILHSLKDSHDNTAKL------------------SGVSY--LLESVDSLTLSREKPSRQ------------- 507 (819)
T ss_pred cchhhHHHHHHHHHHHhhcccccc------------------cccee--eccccchhhhcccchhHH-------------
Confidence 999999999999999999995443 11322 1111 368999999998
Q ss_pred cCCCCccccccCCCCCCCCccccccccccccCCCCCCCCCcccceecchhHHHHHHHHHHHhhcCCCCchhhHHHHHHHH
Q 046182 477 GRDSVEDDWKQGHAPKTSSNFYKLSSIIERTAGPTNLVDVEPCVMKFTEDQIVQLLSSFWIQATLPDNLPSNFEAIAHSF 556 (898)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~fmrLs~~q~~lLlssIw~qa~~~~N~P~NyEAIahTy 556 (898)
|..|||..+.|+..++..+|.+ .+|+|+|||++|.|+
T Consensus 508 ----------------------------------------D~~f~kk~~~~i~~~~~~~~~~---~~~~~~n~~~~~~~~ 544 (819)
T KOG1877|consen 508 ----------------------------------------DTIFMKKNSQQIYRLLYSITAT---SDNVPENYEAIYNTA 544 (819)
T ss_pred ----------------------------------------HHHHHHhchHHHHHHHHHhhhh---hhcchhhHHHHhhhH
Confidence 8999995555555555555554 459999999999998
Q ss_pred HHHHHHhhcCCCChHHHHhhhhhhhhhhhhccCCCCCCCCcchhhhhHHHHHHHHHHHHHhcCCcchhHHHhhhccCCCC
Q 046182 557 NLTLISLRLKNPNDKLMARFFQLPLFLRNLSLDPNNGMLPSVCQRSILVMSTGMLMFAAKVYNIPGLNDLLKTLIPNDLD 636 (898)
Q Consensus 557 sLaLL~~r~K~ss~e~Lv~~fqLafSLq~isL~~~~~~Lpps~RrSLftLaasmLifssk~~nip~L~~~vk~vl~~rvd 636 (898)
+|.+++. +++|+|+++||++|++|++++.++ ++||+++||+|||++++||+|+|++++|| ++|
T Consensus 545 sl~~i~~----~~~e~li~~~~~~~~l~~ls~~~~-~~lp~~~r~~i~al~as~lv~~s~~~~i~------------~l~ 607 (819)
T KOG1877|consen 545 SLILIEK----SINEVLIELFRLALTLQQLSLMNE-RPLPNSRRRSIFALAASYLVLISQAFAIP------------TLD 607 (819)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhc-CCCCCcccccHHHHHHHHHHHHHHHhcCc------------ccc
Confidence 8877776 899999999999999999999998 89999999999999999999999999999 478
Q ss_pred CccccccCcceEEecCCCcccCCCccchHHHHHHHHhhhcccch-hhHHHHHHHHHhhccchhHhHHHHHHHhcCCCCCC
Q 046182 637 PYMGIGDDLQIYVRPQADVKEYGSFTDNQQATSLIYELRNKVYE-SDKIILDIIVQNLSTIIEVEADDLAKQLQEPFTPD 715 (898)
Q Consensus 637 PfL~Lv~D~kL~a~~~~~~~~YGS~eD~~~Al~~Ls~i~~~~~~-s~e~~~~~i~~~l~~~~e~e~~~i~~qLl~~Fspd 715 (898)
||+++|+|+|+.|+ ||+..|+++|.+.|+.+..+... +++..+.+|++.+.++++.|....++||+.
T Consensus 608 ~~~~~v~D~~~~a~-------~~~~~d~~~ass~l~~~~~~~~s~s~~~~~~~v~k~l~~~s~k~~~~~~~rL~~----- 675 (819)
T KOG1877|consen 608 PFLQKVDDCRLEAV-------EGPSSDDNDASSTLSEIALAAESLSRELPALMVVKELIKESLKESGKDSERLFT----- 675 (819)
T ss_pred hHHHHHHHHHHHhc-------cCcccCchhhhhhHHHHHhhcccccccccHHHHHHHHHhhcccccchHHHHHhh-----
Confidence 99999999999887 99999999999999999766555 999999999999999999999999999988
Q ss_pred cccccCcccccccccccccccccccCCccccccCCCCccccccccccccccccCCCCCCCCCCCCCccchhHHHHHHHhh
Q 046182 716 DAIMFGPQSILALDHSQMISHSKESLSFDEDIATNSLVEDDATSEASVANLSRFIPRMPTPSPTSHIVSIGQLMESALKV 795 (898)
Q Consensus 716 d~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddd~~~e~s~~~~s~~~~~~~~s~~~~~~lsv~qLlesv~et 795 (898)
+||+|+|+. .++ ..++.++++.. + .++..+++ -..++..++||++++++.++
T Consensus 676 -~~p~g~q~~--~~p-~~~~~~~~~~~-------d--~~~~~~s~---------------~d~~~~~~~vd~~~n~~~~~ 727 (819)
T KOG1877|consen 676 -ACPYGSQLT--KEP-GYQSISKESKP-------D--REDQRFSS---------------NDLVTFSLDVDKILNPPEET 727 (819)
T ss_pred -hCCcccccc--CCC-cccccccccCC-------c--cccccccc---------------ccccccccchhhccCCcccc
Confidence 999999988 554 55666666632 1 01111111 12346678999999999998
Q ss_pred hcccccccccCCC-CChhhHhhhhhhhhcccchhhh
Q 046182 796 AGQVAGSTISTSP-LPYNTLAGHCEALGSGTRQKLS 830 (898)
Q Consensus 796 a~qv~~~~vs~~p-~py~~m~~qCEal~~gkqqKmS 830 (898)
++ |++| +.|++|+.| |++++|||||++
T Consensus 728 t~-------~~~~~vs~~~~~~~-e~~~~~~~q~~~ 755 (819)
T KOG1877|consen 728 TK-------SNPPEVSIDQMDAH-EATLSGKQQKRS 755 (819)
T ss_pred cc-------CCcccCCHHHHhhH-HHHhhhhhhhcc
Confidence 87 7777 999999999 999999999999
No 2
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=93.83 E-value=0.29 Score=60.54 Aligned_cols=193 Identities=22% Similarity=0.270 Sum_probs=120.2
Q ss_pred CchHHHHHHHHHHHHH--hcC-CceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHH
Q 046182 218 QGLAMIVLSDMAYLME--TSG-NQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMV-LVEIGSVSDLCRH 293 (898)
Q Consensus 218 ~gfA~~vl~~mq~iMe--qSg-nshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss-~avl~aisdLlrH 293 (898)
+-+|-.||+ -+++ +-| |---+|.-|.+|+|+ +.+-.|.=-. -|+|.-.+.--...|.+ +- +..|++|
T Consensus 233 ~vla~~cl~---~l~~~A~~g~~iR~~l~pl~~~~d~-h~~w~p~n~f-av~~~~~vi~~iq~q~s~~v----~~~li~h 303 (819)
T KOG1877|consen 233 KVLAERCLR---ELLGRAKFGTNIRNALKPLLSHLDF-HELWTPPNGF-AVHVFKIVIYLIQRQYSYFV----IQELINH 303 (819)
T ss_pred chhHHHHHH---HhhccccccchHHHHHHHHHhcccc-ceeecCCCcc-chHHHHHHHHHHhhccchHH----HHHHHHH
Confidence 788999999 8998 556 778999999999998 6666665000 01111111111111211 21 3333333
Q ss_pred HH----------------------------------------HhHhhhccccCccchhH-----HHHHHHHHHHHHHHHh
Q 046182 294 LR----------------------------------------KSFQATVESVGEQESNL-----NILLRNSIEDCLLEIA 328 (898)
Q Consensus 294 LR----------------------------------------kSi~~s~~~~~~~~~~~-----n~~lQ~Avi~cLgq~a 328 (898)
|= +-+..+...++.++... +...+..+++|+.++.
T Consensus 304 Ld~~~~~~~~~r~~~~iv~~~~~~i~~~~v~ps~l~i~n~l~rhLR~si~~s~~~~~~~~~~~~~~~~e~~~q~~li~~~ 383 (819)
T KOG1877|consen 304 LDNKKLVAKKPRLGLSIVLVSIALIAATSVGPSVLIIFNDLLRHLRKSISFSDDGNIGLETDNGNYMIEAVVQEALIQLT 383 (819)
T ss_pred HHhhcccccCccccchhHHHHHHHHHhcccchHHHHHHHHHHHHHHhhccccccccCCchhhhhHHHHHHHHHHHHHHHH
Confidence 21 11111122222333442 5568999999999999
Q ss_pred ccCCCCchhHHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHccCCCchhhHHHHHH
Q 046182 329 KGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVGAHQI 408 (898)
Q Consensus 329 ~kv~D~qpi~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~kaFPeall~qLL~amlhpD~EtRv~ah~I 408 (898)
++.++.+|.+++|+||++-++ +++ --.+|..+.++|+++|+.++...|-..++|
T Consensus 384 ~~~~~~~P~~q~~~vm~~~~~---------------------~v~-----~~sk~~~~~~~liq~~~~~s~L~~s~s~~i 437 (819)
T KOG1877|consen 384 KKFANTLPDYQKMAVMLFIMS---------------------KVP-----DLSKPSILGELLIQAMLLKSLLSVSTSYQI 437 (819)
T ss_pred HhhcccCchHHHHHHHHhhcc---------------------ccc-----ccCCccccHHHHHHHHHHHHHhhhhhccee
Confidence 999999999999999955322 112 234889999999999999999999999999
Q ss_pred HHHhhc-CCCCCCcccccccccCCCCCccccccccccc-hhhHHHHHhhhh
Q 046182 409 FSVLLI-PSPINQHHEVASVRSGYLHEPQQWHSNAAST-TSITALLEKLRR 457 (898)
Q Consensus 409 fs~lL~-ps~~~p~~~~~~~~~~~~~d~~~~~s~~~s~-~s~~~~~dkL~~ 457 (898)
+++.+. |++.. +. +++..+.|.... .....++..|..
T Consensus 438 ~~~~l~~~sS~L--------~s----ll~~~l~r~~~~~~~t~eil~sl~d 476 (819)
T KOG1877|consen 438 VSVALAFPSSFL--------DS----LLSTALMRDAELRLVTLEILHSLKD 476 (819)
T ss_pred eeehhhccHHHh--------hh----hhhhhcCcccchhhHHHHHHHHHHH
Confidence 987775 33322 11 233444444444 446667776654
No 3
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=80.26 E-value=6.6 Score=40.90 Aligned_cols=140 Identities=14% Similarity=0.217 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHHhHhhh--ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcC-CceehHHHHHhhhccC
Q 046182 176 PKVWARICIQRMVDLAKETT--TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSG-NQQLILASVIHHLDHK 252 (898)
Q Consensus 176 P~~wA~vCLrnma~lareat--TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSg-nshllLs~LikHLDhK 252 (898)
-...|=.|+..|+.-.+..+ .+..++.+++.-+..++.+.- .=|..||. .+++..+ .+.+++..+..++.|
T Consensus 69 v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~--~~a~~~L~---~i~~~~~~~~~~~~~~l~~~~~~- 142 (228)
T PF12348_consen 69 VSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIR--EAANNALD---AIIESCSYSPKILLEILSQGLKS- 142 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHH--HHHHHHHH---HHHTTS-H--HHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHH--HHHHHHHH---HHHHHCCcHHHHHHHHHHHHHhC-
Confidence 34456678888887666666 577889999999998875533 33555555 7777666 566778888888888
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccC
Q 046182 253 NVSHDPQLKSYVIQVATALARQIRS-GMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGI 331 (898)
Q Consensus 253 nv~~~P~~q~~IV~V~t~la~~ak~-~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv 331 (898)
|+|.+|...++.+..+...... .+...--..+..+++-+.+++ . +.+...+++--+|+..|.+.+
T Consensus 143 ---Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l----~-------D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 143 ---KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLL----S-------DADPEVREAARECLWALYSHF 208 (228)
T ss_dssp ---S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHH----T-------SS-HHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHC----C-------CCCHHHHHHHHHHHHHHHHHC
Confidence 6799999999988888775551 122222223455555555555 3 246778888888988888887
Q ss_pred CCCc
Q 046182 332 GDTR 335 (898)
Q Consensus 332 ~D~q 335 (898)
|+-.
T Consensus 209 ~~~a 212 (228)
T PF12348_consen 209 PERA 212 (228)
T ss_dssp -HHH
T ss_pred CHhh
Confidence 7654
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=73.44 E-value=21 Score=41.58 Aligned_cols=213 Identities=13% Similarity=0.125 Sum_probs=113.2
Q ss_pred ChHHHHHHHHHHHHHHhHhh-hccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHH--hcCCceehHHHHHhhh-c
Q 046182 175 TPKVWARICIQRMVDLAKET-TTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLME--TSGNQQLILASVIHHL-D 250 (898)
Q Consensus 175 nP~~wA~vCLrnma~larea-tTiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMe--qSgnshllLs~LikHL-D 250 (898)
|-.+.+=.||..|+ +.. ..+. -....+.++.... ........+. +++. +..|-..++..|++++ +
T Consensus 282 nvr~~~L~~L~~l~---~~~~~~v~-~~~~~~~~l~~~~----d~~Ir~~~l~---lL~~l~~~~n~~~Il~eL~~~l~~ 350 (526)
T PF01602_consen 282 NVRYIALDSLSQLA---QSNPPAVF-NQSLILFFLLYDD----DPSIRKKALD---LLYKLANESNVKEILDELLKYLSE 350 (526)
T ss_dssp HHHHHHHHHHHHHC---CHCHHHHG-THHHHHHHHHCSS----SHHHHHHHHH---HHHHH--HHHHHHHHHHHHHHHHH
T ss_pred hhehhHHHHHHHhh---cccchhhh-hhhhhhheecCCC----ChhHHHHHHH---HHhhcccccchhhHHHHHHHHHHh
Confidence 45666666666666 333 2344 3333344444222 1223333333 3333 4447777999999999 4
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH------------HHHhHhhhccccC--cc------ch
Q 046182 251 HKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRH------------LRKSFQATVESVG--EQ------ES 310 (898)
Q Consensus 251 hKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrH------------LRkSi~~s~~~~~--~~------~~ 310 (898)
. .++.+|..++..+..+|..-... ....+..+-+|++. ++.-+....+... .. ..
T Consensus 351 ~----~d~~~~~~~i~~I~~la~~~~~~-~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~ 425 (526)
T PF01602_consen 351 L----SDPDFRRELIKAIGDLAEKFPPD-AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLED 425 (526)
T ss_dssp C------HHHHHHHHHHHHHHHHHHGSS-HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTS
T ss_pred c----cchhhhhhHHHHHHHHHhccCch-HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 4 57778999998888888765332 12333333333321 1111111000000 00 01
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCC--CCcHHHHH
Q 046182 311 NLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQ--VFPEALLV 388 (898)
Q Consensus 311 ~~n~~lQ~Avi~cLgq~a~kv~D~qpi~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~k--aFPeall~ 388 (898)
-.+..+..++.-+|||++..+++.+.+.+.+-.+.++...... ..=++++.++.++..... .....++.
T Consensus 426 ~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~---------~vk~~ilt~~~Kl~~~~~~~~~~~~i~~ 496 (526)
T PF01602_consen 426 ISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESP---------EVKLQILTALAKLFKRNPENEVQNEILQ 496 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHH---------HHHHHHHHHHHHHHHHSCSTTHHHHHHH
T ss_pred hhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccH---------HHHHHHHHHHHHHHhhCCchhhHHHHHH
Confidence 2334478999999999999999855566666666555332221 122333555555543211 12235666
Q ss_pred HHHHHcc--CCCchhhHHHHHHHHHh
Q 046182 389 QILKAML--HPNVETRVGAHQIFSVL 412 (898)
Q Consensus 389 qLL~aml--hpD~EtRv~ah~Ifs~l 412 (898)
.++...- .+|+|+|-=|...+..|
T Consensus 497 ~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 497 FLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 6666666 78999999998887755
No 5
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=67.31 E-value=23 Score=36.87 Aligned_cols=124 Identities=16% Similarity=0.200 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHhHhhhccccCcc---c-hhHHHHHHHHHHHHHHHHhccCCCCchh-HHHHHHhhccCCCCcccc
Q 046182 281 LVEIGSVSDLCRHLRKSFQATVESVGEQ---E-SNLNILLRNSIEDCLLEIAKGIGDTRPL-FDMMAMTLEKLPSSGVIA 355 (898)
Q Consensus 281 ~avl~aisdLlrHLRkSi~~s~~~~~~~---~-~~~n~~lQ~Avi~cLgq~a~kv~D~qpi-~dMMaImLenIp~~~~va 355 (898)
-..+..+.+|.++|+..++-..+.--+. . .+.++-++++..+||..+...++-..++ ..++.-. ..+.....
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~---~~~Kn~~v 147 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQG---LKSKNPQV 147 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHH---TT-S-HHH
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHH---HhCCCHHH
Confidence 4455666666666666655433211000 0 2346789999999999999999822333 2222222 12222222
Q ss_pred cchhhHHHHHHHHHHHHhhhcc--CCCCCc----HHHHHHHHHHccCCCchhhHHHHHHHHHhh
Q 046182 356 RATLGSLIILAHMISVASISSR--SQQVFP----EALLVQILKAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 356 rtti~a~~~ta~il~Sl~~vs~--~~kaFP----eall~qLL~amlhpD~EtRv~ah~Ifs~lL 413 (898)
| . .+++.+..+++... ....-+ +.+...+-...-.+|+++|-.|.+.|..+.
T Consensus 148 R--~----~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 148 R--E----ECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp H--H----HHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred H--H----HHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 2 1 12222322222221 111112 334555666788999999999999999883
No 6
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=48.05 E-value=4.1e+02 Score=31.53 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHHHH---hHhhh-ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHH------------HhcCCc
Q 046182 175 TPKVWARICIQRMVDL---AKETT-TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLM------------ETSGNQ 238 (898)
Q Consensus 175 nP~~wA~vCLrnma~l---areat-TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iM------------eqSgns 238 (898)
.-..-|-.||-|++=+ +|..+ .. ...+.+...+.++..|.-....-+...| +-+|+ ++-+--
T Consensus 47 ~v~~EALKCL~N~lf~s~~aR~~~~~~-~~~~~l~~~Lk~~~~~~~~~d~~Fl~~R-LLFLlTa~~~~~~~~L~~e~~~~ 124 (446)
T PF10165_consen 47 DVSREALKCLCNALFLSPSARQIFVDL-GLAEKLCERLKNYSDSSQPSDVEFLDSR-LLFLLTALRPDDRKKLIEEHHGV 124 (446)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHc-CcHHHHHHHHHcccccCCChhHHHHHHH-HHHHHhcCChhHHHHHHHHhhhH
Confidence 4445688899999865 66666 33 4456677777777665222333333333 11111 122233
Q ss_pred eehHHHHHhhhccCCCCCCc---------hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccc
Q 046182 239 QLILASVIHHLDHKNVSHDP---------QLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQE 309 (898)
Q Consensus 239 hllLs~LikHLDhKnv~~~P---------~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~ 309 (898)
.+++..|-+|++.+....+. ..-.+|..++-.+-.+......-.....+..|++.||+.+ .....
T Consensus 125 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l-~~~~~----- 198 (446)
T PF10165_consen 125 ELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLL-PPPPS----- 198 (446)
T ss_pred HHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHh-ccCCC-----
Confidence 45777777888754433321 1233555555555444433332255666677777777775 11111
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 046182 310 SNLNILLRNSIEDCLLEI 327 (898)
Q Consensus 310 ~~~n~~lQ~Avi~cLgq~ 327 (898)
......+...++++|..+
T Consensus 199 ~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNL 216 (446)
T ss_pred CCcchhhHHHHHHHHhCC
Confidence 123445566777777655
No 7
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.00 E-value=5.7e+02 Score=33.06 Aligned_cols=243 Identities=14% Similarity=0.176 Sum_probs=135.2
Q ss_pred ehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHH
Q 046182 240 LILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNS 319 (898)
Q Consensus 240 llLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~A 319 (898)
.+++.|.+|++-.....++=+-..|..++.-+= -+++..+..+++||-+-+...... + -|..|-.-
T Consensus 548 ~ll~nLf~a~s~p~~~EneylmKaImRii~i~~--------~~i~p~~~~~l~~Lteiv~~v~KN--P----s~P~fnHY 613 (960)
T KOG1992|consen 548 ILLTNLFKALSLPGKAENEYLMKAIMRIISILQ--------SAIIPHAPELLRQLTEIVEEVSKN--P----SNPQFNHY 613 (960)
T ss_pred HHHHHHHHhccCCcccccHHHHHHHHHHHHhCH--------HhhhhhhhHHHHHHHHHHHHHhcC--C----CCchhHHH
Confidence 467888899876666666655555555543211 345677788888888777654442 2 24556666
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHhhccCCCCcccccchhhH--HHHHHHHHHHHhhhccCCCCCcH---HHHHHHHHHc
Q 046182 320 IEDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGS--LIILAHMISVASISSRSQQVFPE---ALLVQILKAM 394 (898)
Q Consensus 320 vi~cLgq~a~kv~D~qpi~dMMaImLenIp~~~~vartti~a--~~~ta~il~Sl~~vs~~~kaFPe---all~qLL~am 394 (898)
+=|.||-+=++..+.+|...--+.- .=+|....+-+--|.= -|.+ |+++-+...+.+ ..|+ +||..||...
T Consensus 614 LFEsi~~li~~t~~~~~~~vs~~e~-aL~p~fq~Il~eDI~EfiPYvf-Qlla~lve~~~~--~ip~~~~~l~~~lLsp~ 689 (960)
T KOG1992|consen 614 LFESIGLLIRKTCKANPSAVSSLEE-ALFPVFQTILSEDIQEFIPYVF-QLLAVLVEHSSG--TIPDSYSPLFPPLLSPN 689 (960)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCC--CCchhHHHHHHHhcCHH
Confidence 7788888888888888654433332 2222222111100000 0111 222222222222 4664 4566666655
Q ss_pred cCCCchhhHHHHHHHHHhhcCCCCCCcccccccccCCCCCccccccccccchhhHHHHHhhhhcccCccccccccccccc
Q 046182 395 LHPNVETRVGAHQIFSVLLIPSPINQHHEVASVRSGYLHEPQQWHSNAASTTSITALLEKLRRDKNGVKMDKSRYNVHDE 474 (898)
Q Consensus 395 lhpD~EtRv~ah~Ifs~lL~ps~~~p~~~~~~~~~~~~~d~~~~~s~~~s~~s~~~~~dkL~~eK~s~q~~~~~~~~~~~ 474 (898)
++....-=-.+-|++.++|-+.+..=-. .. .++..-.+|+||.--
T Consensus 690 lW~r~gNipalvrLl~aflk~g~~~~~~-------------~~------~l~~iLGifqkLiaS---------------- 734 (960)
T KOG1992|consen 690 LWKRSGNIPALVRLLQAFLKTGSQIVEA-------------AD------KLSGILGIFQKLIAS---------------- 734 (960)
T ss_pred HHhhcCCcHHHHHHHHHHHhcCchhhcc-------------cc------cchhHHHHHHHHhcC----------------
Confidence 5444444444556666666444332000 00 012244455555420
Q ss_pred cccCCCCccccccCCCCCCCCccccccccccccCCCCCCCCCcccceecchhHHHHHHHHHHHhhcCCCCchhhHHHHHH
Q 046182 475 IRGRDSVEDDWKQGHAPKTSSNFYKLSSIIERTAGPTNLVDVEPCVMKFTEDQIVQLLSSFWIQATLPDNLPSNFEAIAH 554 (898)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~fmrLs~~q~~lLlssIw~qa~~~~N~P~NyEAIah 554 (898)
|-..||+=.||.+|. .+.|-|--+=|-
T Consensus 735 -----------------------------------------------ka~Dh~GF~LLn~i~------~~~~~~~~~py~ 761 (960)
T KOG1992|consen 735 -----------------------------------------------KANDHHGFYLLNTII------ESIPPNELAPYM 761 (960)
T ss_pred -----------------------------------------------cccchhHHHHHHHHH------hcCCHhhhhHHH
Confidence 011299999999998 567777666666
Q ss_pred HHHHHHHHhhcCCCChHHHHhhhhhhhhhhhhcc
Q 046182 555 SFNLTLISLRLKNPNDKLMARFFQLPLFLRNLSL 588 (898)
Q Consensus 555 TysLaLL~~r~K~ss~e~Lv~~fqLafSLq~isL 588 (898)
+....|||.|++|+.-+--+-.|=.=|++=.+..
T Consensus 762 k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~ 795 (960)
T KOG1992|consen 762 KQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKK 795 (960)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Confidence 7779999999999988776666665555544443
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.18 E-value=3.4e+02 Score=34.65 Aligned_cols=130 Identities=13% Similarity=0.147 Sum_probs=93.1
Q ss_pred hccCCCCcccCCchHHHHHHHHHHHHHhcCCceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHH
Q 046182 207 YFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGS 286 (898)
Q Consensus 207 yfD~h~lWsp~~gfA~~vl~~mq~iMeqSgnshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~a 286 (898)
+.+....| +++.++.+.|. .+|..|++--|- .-.++-..|..--+.+.+++.++...-.|++.+.
T Consensus 479 ~~eA~~s~-~qt~~~t~~y~-------------~ii~~Ll~~tdr-~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~ 543 (859)
T KOG1241|consen 479 AYEAAVSN-GQTDPATPFYE-------------AIIGSLLKVTDR-ADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKL 543 (859)
T ss_pred HHHhccCC-CCCCccchhHH-------------HHHHHHHhhccc-cccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 34445556 55666666665 456667665554 4457888999999999999999888888999999
Q ss_pred HHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccC-CCCchhHHHH-H---HhhccCCCCccc
Q 046182 287 VSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGI-GDTRPLFDMM-A---MTLEKLPSSGVI 354 (898)
Q Consensus 287 isdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv-~D~qpi~dMM-a---ImLenIp~~~~v 354 (898)
..-.+.-|-.+|+...- +..+-..-..+|.-+=+||+.+-+|+ +|..++-|++ . -|+|. +..+++
T Consensus 544 ~l~il~kl~q~i~~~~l--~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s-~~s~~v 613 (859)
T KOG1241|consen 544 TLVILEKLDQTISSQIL--SLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFES-KRSAVV 613 (859)
T ss_pred HHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcC-Cccccc
Confidence 99999999999982222 12224556789999999999999999 6777665543 3 23465 444433
No 9
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=40.38 E-value=1.2e+02 Score=36.28 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=67.3
Q ss_pred HHHHHHHHhHhhhc-ccc--chhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcCCcee----hHHHHHhhhccCCCC
Q 046182 183 CIQRMVDLAKETTT-MRR--VLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQQL----ILASVIHHLDHKNVS 255 (898)
Q Consensus 183 CLrnma~lareatT-iRr--VLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSgnshl----lLs~LikHLDhKnv~ 255 (898)
++=++++.+.++.+ +.. +++.++..+|+.+.=.-.| |+.+|.+|.. .+.|..|+ ++..|+.=|.+ ..
T Consensus 183 l~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqln--alell~~La~--~~~g~~yL~~~gi~~~L~~~l~~--~~ 256 (503)
T PF10508_consen 183 LLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLN--ALELLSELAE--TPHGLQYLEQQGIFDKLSNLLQD--SE 256 (503)
T ss_pred HHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHH--HHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHHhc--cc
Confidence 44445544444443 333 8999999999855322211 2333332221 12233333 23333333333 34
Q ss_pred CCch-hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCC
Q 046182 256 HDPQ-LKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGD 333 (898)
Q Consensus 256 ~~P~-~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D 333 (898)
.+|. -..-|...+.-....+.. .-+-+++.+.+++..|-..++. .+...+.+-.+|+|.+|...-.
T Consensus 257 ~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s-----------~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 257 EDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLES-----------QDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred cCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCC-----------CChhHHHHHHHHHHHHhCCHHH
Confidence 4662 122222222223333333 3356677778887777744432 3455668888999999987633
No 10
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=34.92 E-value=1.7e+02 Score=30.51 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=60.6
Q ss_pred HHHHhcCCceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccC-cc
Q 046182 230 YLMETSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVG-EQ 308 (898)
Q Consensus 230 ~iMeqSgnshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~-~~ 308 (898)
.+++.. .+.+-+..++.|+.+ ....++.+|.==...++.++. -+...+..-+..|+..||+.+...+.... -+
T Consensus 53 tlLd~~-~~~~~~~~~~~~v~~-GL~D~~DIk~L~~~~l~kl~~----~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQ 126 (169)
T PF08623_consen 53 TLLDTC-LSRIDISEFLDRVEA-GLKDEHDIKMLCHLMLSKLAQ----LAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQ 126 (169)
T ss_dssp HHHHST-CSSS-HHHHHHHHHH-TTSS-HHHHHHHHHHHHHHHH----S-HHHHHHCCTTTHHHHHHHHH----TTS-HH
T ss_pred HHHHHH-HHhCCHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHhhccCCCCcccc
Confidence 555522 223335555666666 444466665544444555543 23344455588899999999986665432 23
Q ss_pred chhHHHHHHHHHHHHHHHHhccCCCCchhH
Q 046182 309 ESNLNILLRNSIEDCLLEIAKGIGDTRPLF 338 (898)
Q Consensus 309 ~~~~n~~lQ~Avi~cLgq~a~kv~D~qpi~ 338 (898)
+.+-+..++.++..|+..+.+++|+++..-
T Consensus 127 E~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~ 156 (169)
T PF08623_consen 127 EIEKQQELIRSVLRAVKALNSKIPGAESSP 156 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HSSTS-SSSH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCcccccCH
Confidence 477788899999999999999998876543
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=34.36 E-value=3.6e+02 Score=31.56 Aligned_cols=141 Identities=16% Similarity=0.231 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhHhhh-ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHh-cCCceehHHHHHhhhccCCCCC
Q 046182 179 WARICIQRMVDLAKETT-TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMET-SGNQQLILASVIHHLDHKNVSH 256 (898)
Q Consensus 179 wA~vCLrnma~lareat-TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeq-SgnshllLs~LikHLDhKnv~~ 256 (898)
..+..++.+..++.... .....++.++..+...+.-. ..-++.++. .++.+ .+...-++..|+++++. .+
T Consensus 356 ~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~--~~~~~~~i~---~ll~~~~~~~~~~l~~L~~~l~~---~~ 427 (526)
T PF01602_consen 356 FRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYV--SNEIINVIR---DLLSNNPELREKILKKLIELLED---IS 427 (526)
T ss_dssp HHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGC--HCHHHHHHH---HHHHHSTTTHHHHHHHHHHHHTS---SS
T ss_pred hhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccc--cchHHHHHH---HHhhcChhhhHHHHHHHHHHHHH---hh
Confidence 45556666666555544 56778888888888754222 233344444 56664 34556789999999988 57
Q ss_pred CchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCCCch
Q 046182 257 DPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRP 336 (898)
Q Consensus 257 ~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D~qp 336 (898)
+|.++..++-++++-+..... .+...++++++-+.+. .+....|..+..++..+..+.|+...
T Consensus 428 ~~~~~~~~~wilGEy~~~~~~------~~~~~~~~~~l~~~~~-----------~~~~~vk~~ilt~~~Kl~~~~~~~~~ 490 (526)
T PF01602_consen 428 SPEALAAAIWILGEYGELIEN------TESAPDILRSLIENFI-----------EESPEVKLQILTALAKLFKRNPENEV 490 (526)
T ss_dssp SHHHHHHHHHHHHHHCHHHTT------TTHHHHHHHHHHHHHT-----------TSHHHHHHHHHHHHHHHHHHSCSTTH
T ss_pred HHHHHHHHHhhhcccCCcccc------cccHHHHHHHHHHhhc-----------cccHHHHHHHHHHHHHHHhhCCchhh
Confidence 888899999888888876555 2255666666665552 23567899999999999999996544
Q ss_pred hHHHHHHh
Q 046182 337 LFDMMAMT 344 (898)
Q Consensus 337 i~dMMaIm 344 (898)
.-.|.-++
T Consensus 491 ~~~i~~~~ 498 (526)
T PF01602_consen 491 QNEILQFL 498 (526)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 43444444
No 12
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=33.23 E-value=7.5e+02 Score=29.41 Aligned_cols=112 Identities=11% Similarity=0.014 Sum_probs=80.5
Q ss_pred hcCCceehHHHHHhhh--ccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchh
Q 046182 234 TSGNQQLILASVIHHL--DHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESN 311 (898)
Q Consensus 234 qSgnshllLs~LikHL--DhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~ 311 (898)
.|.++|.++..|..=| +.+.-..++.+-.|-|.++..+....+.+..|++--....++-.|+.++++.-+. +
T Consensus 244 ~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~-----v- 317 (464)
T PF11864_consen 244 KSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPR-----V- 317 (464)
T ss_pred cCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCe-----e-
Confidence 4667888999988888 4444566777778999999999888766667776555556888888888743332 1
Q ss_pred HHHHHHHHHHHHH-HHHhccC--CCCchhHHHHHHhhccCCCCc
Q 046182 312 LNILLRNSIEDCL-LEIAKGI--GDTRPLFDMMAMTLEKLPSSG 352 (898)
Q Consensus 312 ~n~~lQ~Avi~cL-gq~a~kv--~D~qpi~dMMaImLenIp~~~ 352 (898)
+-..=..+...| +++++.+ .|...+++++.-++.++....
T Consensus 318 -~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~ 360 (464)
T PF11864_consen 318 -DYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFD 360 (464)
T ss_pred -hHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccc
Confidence 222235566666 8888876 889999999987768876544
No 13
>PF02444 HEV_ORF1: Hepatitis E virus ORF-2 (Putative capsid protein); InterPro: IPR003384 The Hepatitis E virus(HEV) genome is a single-stranded, positive-sense RNA molecule of approximately 7.5 kb []. Three open reading frames (ORF) were identified within the HEV genome: ORF1 encodes nonstructural proteins, ORF2 encodes the putative structural protein(s), and ORF3 encodes a protein of unknown function. ORF2 contains a consensus signal peptide sequence at its amino terminus and a capsid-like region with a high content of basic amino acids similar to that seen with other virus capsid proteins [].; GO: 0030430 host cell cytoplasm
Probab=30.42 E-value=18 Score=34.34 Aligned_cols=15 Identities=47% Similarity=1.347 Sum_probs=9.7
Q ss_pred cCCC-cccccCCCccc
Q 046182 11 ACGS-MCVCCPALRSR 25 (898)
Q Consensus 11 aC~~-lC~cCpaLR~r 25 (898)
-|.+ .|-|||.-||-
T Consensus 13 ~csscfclccprhrp~ 28 (114)
T PF02444_consen 13 CCSSCFCLCCPRHRPV 28 (114)
T ss_pred ecccceeeecCCCCcH
Confidence 3544 37788877763
No 14
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=29.28 E-value=5.7e+02 Score=25.40 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=71.2
Q ss_pred hhhhhccCCCCcccCCchHHHHHHHHHHHHHhc-CCceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccch
Q 046182 203 PMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETS-GNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVL 281 (898)
Q Consensus 203 plf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqS-gnshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~ 281 (898)
++|+.-=+.+-|-| .|+.+. +++-+.+.+ +...-++..|.+-|++ +.|-||.--+.|+..+++. |+ +
T Consensus 4 ~ll~~ATsdd~~p~-pgy~~~---Eia~~t~~s~~~~~ei~d~L~kRL~~----~~~hVK~K~Lrilk~l~~~---G~-~ 71 (122)
T cd03572 4 SLLSKATSDDDEPT-PGYLYE---EIAKLTRKSVGSCQELLEYLLKRLKR----SSPHVKLKVLKIIKHLCEK---GN-S 71 (122)
T ss_pred HHHHHHhcCCCCCC-chHHHH---HHHHHHHcCHHHHHHHHHHHHHHhcC----CCCcchHHHHHHHHHHHhh---CC-H
Confidence 45666667788888 877555 555666655 4556788888888888 4499999999999998885 32 3
Q ss_pred HHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHH
Q 046182 282 VEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEI 327 (898)
Q Consensus 282 avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~ 327 (898)
...-.+..-+.-.|.+.++.-.-........+...+++-.+|+.-+
T Consensus 72 ~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 72 DFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 3333333333334444444331111122567788888888877643
No 15
>PRK09687 putative lyase; Provisional
Probab=27.13 E-value=5.9e+02 Score=28.28 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=76.5
Q ss_pred cCCceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHH
Q 046182 235 SGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNI 314 (898)
Q Consensus 235 SgnshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~ 314 (898)
+|+...-+..|+.||+| .++.+|...+..+..+- .+.++..+..|++ +.+.
T Consensus 18 ~~~~~~~~~~L~~~L~d----~d~~vR~~A~~aL~~~~-------~~~~~~~l~~ll~------------------~~d~ 68 (280)
T PRK09687 18 SQCKKLNDDELFRLLDD----HNSLKRISSIRVLQLRG-------GQDVFRLAIELCS------------------SKNP 68 (280)
T ss_pred HHHhhccHHHHHHHHhC----CCHHHHHHHHHHHHhcC-------cchHHHHHHHHHh------------------CCCH
Confidence 45778889999999998 67789988777655432 2444444433321 2356
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHc
Q 046182 315 LLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAM 394 (898)
Q Consensus 315 ~lQ~Avi~cLgq~a~kv~D~qpi~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~kaFPeall~qLL~am 394 (898)
..+.+-..+||+|+..-..-...+..+.-++.+=|... |-++ ++..+.+ ...........++..|..+.
T Consensus 69 ~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~-VR~~---A~~aLG~-------~~~~~~~~~~~a~~~l~~~~ 137 (280)
T PRK09687 69 IERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSAC-VRAS---AINATGH-------RCKKNPLYSPKIVEQSQITA 137 (280)
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHH-HHHH---HHHHHhc-------ccccccccchHHHHHHHHHh
Confidence 78888999999976532111223333332222322211 1111 1112222 21111111234556677788
Q ss_pred cCCCchhhHHHHHHHH
Q 046182 395 LHPNVETRVGAHQIFS 410 (898)
Q Consensus 395 lhpD~EtRv~ah~Ifs 410 (898)
-++|+++|..|-.-+.
T Consensus 138 ~D~~~~VR~~a~~aLg 153 (280)
T PRK09687 138 FDKSTNVRFAVAFALS 153 (280)
T ss_pred hCCCHHHHHHHHHHHh
Confidence 8999999999888774
No 16
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=26.55 E-value=1.4e+02 Score=26.75 Aligned_cols=109 Identities=15% Similarity=0.024 Sum_probs=61.6
Q ss_pred chhhhhhhccCCCCcccCCchHHHHHHHHHHH---HHhcCCceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhh
Q 046182 200 VLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYL---METSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIR 276 (898)
Q Consensus 200 VLeplf~yfD~h~lWsp~~gfA~~vl~~mq~i---MeqSgnshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak 276 (898)
+++++..+++..+ |.. ...|+.++..|..- ..+.-..+-++..|++-|.+ ++|.++..-+.++..++.
T Consensus 8 ~i~~l~~~l~~~~-~~~-~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----~~~~v~~~a~~~L~~l~~--- 78 (120)
T cd00020 8 GLPALVSLLSSSD-ENV-QREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS----EDEEVVKAALWALRNLAA--- 78 (120)
T ss_pred ChHHHHHHHHcCC-HHH-HHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC----CCHHHHHHHHHHHHHHcc---
Confidence 6677777777665 766 67777777744321 00111334678888888877 478888887777777754
Q ss_pred cccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHh
Q 046182 277 SGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIA 328 (898)
Q Consensus 277 ~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a 328 (898)
........-.-+.+++.|-+.++.. +...++....+|..++
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~-----------~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSS-----------NEDIQKNATGALSNLA 119 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcC-----------CHHHHHHHHHHHHHhh
Confidence 2322222112223455555544321 2345556666665553
No 17
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=24.85 E-value=4.9e+02 Score=33.34 Aligned_cols=90 Identities=18% Similarity=0.109 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHhccCC--CCchhHHH-HHHhhccCCCCcc-cccchhhHHHHHHHHHHHHhhhccCCCCCcHHHHH
Q 046182 313 NILLRNSIEDCLLEIAKGIG--DTRPLFDM-MAMTLEKLPSSGV-IARATLGSLIILAHMISVASISSRSQQVFPEALLV 388 (898)
Q Consensus 313 n~~lQ~Avi~cLgq~a~kv~--D~qpi~dM-MaImLenIp~~~~-vartti~a~~~ta~il~Sl~~vs~~~kaFPeall~ 388 (898)
-...+++.-.++-.++.+.| =+...+++ +..|.+. + .- +.+|+.-+ +..+..+- ++..+-+-|+.
T Consensus 531 v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q-~--~y~~R~t~l~s-------i~~la~v~-g~ei~~~~Llp 599 (759)
T KOG0211|consen 531 VYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQ-D--NYLVRMTTLFS-------IHELAEVL-GQEITCEDLLP 599 (759)
T ss_pred HHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcC-c--ccchhhHHHHH-------HHHHHHHh-ccHHHHHHHhH
Confidence 45788999999999999998 22222333 3333222 1 21 12222222 44444443 23456677788
Q ss_pred HHHHHccCCCchhhHHHHHHHHHhh
Q 046182 389 QILKAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 389 qLL~amlhpD~EtRv~ah~Ifs~lL 413 (898)
.++....+|++++|++|-+-|..++
T Consensus 600 ~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 600 VFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred HHHHhccCCchhhhhhHHHHHHHHH
Confidence 8888999999999999999998776
No 18
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=23.02 E-value=61 Score=38.22 Aligned_cols=32 Identities=34% Similarity=0.738 Sum_probs=22.2
Q ss_pred cccCCCcccccCCCc--ccCCChhHHH-HHHHhhh
Q 046182 9 FPACGSMCVCCPALR--SRSRQPVKRY-KKLLAEI 40 (898)
Q Consensus 9 ~paC~~lC~cCpaLR--~rSrqpvKRY-KkLva~I 40 (898)
+|-|...|.+|.--+ ...+.++++| ++|+++|
T Consensus 57 IPfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei 91 (453)
T PRK13347 57 VPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREI 91 (453)
T ss_pred eCCccccCCCCCCcCcCccccchHHHHHHHHHHHH
Confidence 589999999997543 2345677888 5556554
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.57 E-value=4.8e+02 Score=34.55 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=101.1
Q ss_pred HHHHHHhHhhh--ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHH--hcCCceehHHHHHhhhccCCCCCCchh
Q 046182 185 QRMVDLAKETT--TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLME--TSGNQQLILASVIHHLDHKNVSHDPQL 260 (898)
Q Consensus 185 rnma~lareat--TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMe--qSgnshllLs~LikHLDhKnv~~~P~~ 260 (898)
+-+++-.|.++ .+.+++-=++.++=.++-|. ..+|+++|-|.-.-+. ..+|.--++..++.-+-. +.|.|
T Consensus 828 ~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~--r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d----~~pEV 901 (1075)
T KOG2171|consen 828 AALAKALKGSFLPFFENFLPLIVKLLKSKKTVA--RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQD----SDPEV 901 (1075)
T ss_pred HHHHHHccccccHHHHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCC----CCHHH
Confidence 44444344444 34455555777888888887 8899999994443333 123444667777777755 69999
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCCCchhHHH
Q 046182 261 KSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFDM 340 (898)
Q Consensus 261 q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D~qpi~dM 340 (898)
|.++..=...+|+.+.....|-+...+--|.+-+-...-. .++|..-.+-.+-||+.+..+-++.=|+.-.
T Consensus 902 RqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar---------~Ee~~~ateNa~gaiaki~~~~~~~i~vdqv 972 (1075)
T KOG2171|consen 902 RQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLAR---------TEENRRATENAIGAIAKILLFNPNRIPVDQV 972 (1075)
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhh---------hHHHhHHHHHHHHHHHHHHHhCCccCcHHHH
Confidence 9999999999999977775577777777776555444322 1334444444444455555566777777777
Q ss_pred HHHhhccCCCCcc
Q 046182 341 MAMTLEKLPSSGV 353 (898)
Q Consensus 341 MaImLenIp~~~~ 353 (898)
....|..+|..+.
T Consensus 973 l~~~l~~LPl~~D 985 (1075)
T KOG2171|consen 973 LPAWLSWLPLKED 985 (1075)
T ss_pred HHHHHHhCCCccc
Confidence 7777888887663
No 20
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=20.60 E-value=3.6e+02 Score=30.06 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=55.8
Q ss_pred CceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHH
Q 046182 237 NQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILL 316 (898)
Q Consensus 237 nshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~l 316 (898)
........+++||++ .++.++.--..+++.++..........+-+++..++..|+.-+. ..+..+
T Consensus 102 ~~~~~~~~fl~ll~~----~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~-----------~~~~~~ 166 (312)
T PF03224_consen 102 DDSDPYSPFLKLLDR----NDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLS-----------SSDSEL 166 (312)
T ss_dssp TTH--HHHHHHH-S-----SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT------------HHHH--
T ss_pred ccchhHHHHHHHhcC----CCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhc-----------CCCcch
Confidence 334488899999998 48888888888888888876666665556788888888887332 245667
Q ss_pred HHHHHHHHHHHhccCCCCchhH
Q 046182 317 RNSIEDCLLEIAKGIGDTRPLF 338 (898)
Q Consensus 317 Q~Avi~cLgq~a~kv~D~qpi~ 338 (898)
|.....|++.+. +.+.|.+.+
T Consensus 167 ~~~av~~L~~LL-~~~~~R~~f 187 (312)
T PF03224_consen 167 QYIAVQCLQNLL-RSKEYRQVF 187 (312)
T ss_dssp -HHHHHHHHHHH-TSHHHHHHH
T ss_pred HHHHHHHHHHHh-CcchhHHHH
Confidence 788889999997 566666554
Done!