Query 046182
Match_columns 898
No_of_seqs 114 out of 132
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 91.1 0.87 3E-05 45.9 9.9 137 174-333 69-209 (242)
2 2bpt_A Importin beta-1 subunit 90.9 3.5 0.00012 48.3 16.1 205 196-413 451-667 (861)
3 1qgr_A Protein (importin beta 89.0 8.9 0.0003 44.9 17.5 206 196-413 448-678 (876)
4 2qk1_A Protein STU2; STU2P, XM 86.6 3 0.0001 43.1 10.3 134 179-333 80-224 (249)
5 1qgr_A Protein (importin beta 85.3 4.5 0.00015 47.4 12.1 219 183-412 631-869 (876)
6 1u6g_C TIP120 protein, CAND1; 85.2 1.5 5.1E-05 54.6 8.4 292 75-413 190-547 (1230)
7 1u6g_C TIP120 protein, CAND1; 84.2 6.5 0.00022 48.9 13.5 206 178-414 66-284 (1230)
8 1b3u_A Protein (protein phosph 83.1 0.7 2.4E-05 51.4 3.8 203 177-414 104-310 (588)
9 2bpt_A Importin beta-1 subunit 81.2 7.2 0.00025 45.6 11.6 142 182-334 620-768 (861)
10 2qk2_A LP04448P; mini spindles 80.2 16 0.00055 36.5 12.4 178 201-413 17-204 (242)
11 1w63_A Adapter-related protein 80.1 23 0.0008 41.0 15.3 188 196-413 347-576 (618)
12 2vgl_B AP-2 complex subunit be 79.9 12 0.00042 43.0 12.9 159 234-412 347-530 (591)
13 4ffb_C Protein STU2; tubulin f 75.6 7.8 0.00027 40.0 8.7 139 174-333 67-216 (278)
14 2qk1_A Protein STU2; STU2P, XM 75.4 9.5 0.00032 39.3 9.2 141 256-417 28-178 (249)
15 1b3u_A Protein (protein phosph 75.2 3.4 0.00012 45.9 6.1 181 198-412 401-585 (588)
16 4hxt_A De novo protein OR329; 72.3 5.9 0.0002 38.7 6.5 187 199-418 44-245 (252)
17 4fdd_A Transportin-1; heat rep 70.5 87 0.003 37.1 17.1 174 217-413 599-783 (852)
18 2jdq_A Importin alpha-1 subuni 64.9 33 0.0011 36.6 10.9 200 178-414 38-263 (450)
19 4fdd_A Transportin-1; heat rep 60.8 53 0.0018 39.0 12.7 164 240-412 526-697 (852)
20 4db8_A Armadillo-repeat protei 57.5 5.8 0.0002 39.2 3.1 198 176-412 28-249 (252)
21 2vgl_A Adaptor protein complex 57.2 37 0.0013 39.6 10.3 160 234-413 398-588 (621)
22 1w63_A Adapter-related protein 50.0 27 0.00091 40.6 7.5 209 184-413 128-341 (618)
23 2z6h_A Catenin beta-1, beta-ca 49.9 91 0.0031 35.9 11.9 92 199-295 56-150 (644)
24 1wa5_B Importin alpha subunit; 45.6 24 0.00081 39.4 6.0 182 197-414 85-286 (530)
25 3ul1_B Importin subunit alpha- 45.5 34 0.0012 38.5 7.3 148 241-414 101-261 (510)
26 4b8j_A Importin subunit alpha- 42.8 32 0.0011 38.2 6.4 206 174-413 86-314 (528)
27 4hxt_A De novo protein OR329; 41.1 48 0.0016 32.0 6.8 146 240-413 44-198 (252)
28 1ibr_B P95, importin beta-1 su 39.6 1.1E+02 0.0039 32.3 9.9 153 240-413 259-436 (462)
29 3tpo_A Importin subunit alpha- 39.0 51 0.0017 37.1 7.4 148 241-414 120-280 (529)
30 4b8j_A Importin subunit alpha- 37.7 24 0.00083 39.2 4.4 204 178-414 136-358 (528)
31 1wa5_B Importin alpha subunit; 37.1 27 0.00092 39.0 4.7 183 199-413 130-327 (530)
32 2jdq_A Importin alpha-1 subuni 34.5 1.6E+02 0.0054 31.2 10.0 149 240-414 64-221 (450)
33 1jdh_A Beta-catenin; beta-cate 33.8 3E+02 0.01 29.8 12.4 182 199-413 101-294 (529)
34 1jdh_A Beta-catenin; beta-cate 33.0 74 0.0025 34.7 7.3 184 199-414 59-256 (529)
35 3tpo_A Importin subunit alpha- 29.2 69 0.0024 36.0 6.4 212 173-413 87-321 (529)
36 1oyz_A Hypothetical protein YI 28.2 2.7E+02 0.0093 27.7 10.1 132 241-412 24-155 (280)
37 3ul1_B Importin subunit alpha- 27.4 2.3E+02 0.0079 31.6 10.3 212 173-413 68-302 (510)
38 1ibr_B P95, importin beta-1 su 24.0 63 0.0021 34.3 4.6 114 198-333 320-441 (462)
39 4db8_A Armadillo-repeat protei 23.2 63 0.0022 31.6 4.1 145 241-413 55-208 (252)
40 4db6_A Armadillo repeat protei 23.1 54 0.0019 31.2 3.5 140 241-412 55-207 (210)
41 2k02_A Ferrous iron transport 21.8 32 0.0011 30.7 1.5 23 1-23 43-68 (87)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.15 E-value=0.87 Score=45.86 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=95.1
Q ss_pred CChHH--HHHHHHHHHHHHhHhhh--ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcCCceehHHHHHhhh
Q 046182 174 ETPKV--WARICIQRMVDLAKETT--TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQQLILASVIHHL 249 (898)
Q Consensus 174 enP~~--wA~vCLrnma~lareat--TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSgnshllLs~LikHL 249 (898)
.|+.+ -|-.||..|++-.+..+ .+..++.+++..|...+. .- ..-|..++. .++...+ -..++..|...|
T Consensus 69 ~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~-~v-r~~a~~aL~---~~~~~~~-~~~ll~~l~~~l 142 (242)
T 2qk2_A 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKP-NV-VTALREAID---AIYASTS-LEAQQESIVESL 142 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCH-HH-HHHHHHHHH---HHHTTSC-HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCH-HH-HHHHHHHHH---HHHHcCC-HHHHHHHHHHHH
Confidence 45555 67778888886545444 578899999999986542 11 344555555 5665433 235678888888
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhc
Q 046182 250 DHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAK 329 (898)
Q Consensus 250 DhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~ 329 (898)
+|| +|.+|..++..+..++.....+ ......+..++.+|-+.+. +.+...+++-.+||+.++.
T Consensus 143 ~~~----~~~vr~~~l~~l~~~l~~~~~~--~~~~~~l~~l~p~l~~~l~-----------D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 143 SNK----NPSVKSETALFIARALTRTQPT--ALNKKLLKLLTTSLVKTLN-----------EPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp TCS----CHHHHHHHHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHT-----------SSCHHHHHHHHHHHHHHHH
T ss_pred cCC----ChHHHHHHHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHHhc-----------CCChHHHHHHHHHHHHHHH
Confidence 884 6899999999988876543211 1123455677777777773 2356789999999999999
Q ss_pred cCCC
Q 046182 330 GIGD 333 (898)
Q Consensus 330 kv~D 333 (898)
.+|.
T Consensus 206 ~vg~ 209 (242)
T 2qk2_A 206 LMGD 209 (242)
T ss_dssp HHCH
T ss_pred HcCH
Confidence 9985
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=90.92 E-value=3.5 Score=48.25 Aligned_cols=205 Identities=8% Similarity=0.078 Sum_probs=114.5
Q ss_pred ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcC-------Cce--ehHHHHHhhhccCCCCCCchhHHHHHH
Q 046182 196 TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSG-------NQQ--LILASVIHHLDHKNVSHDPQLKSYVIQ 266 (898)
Q Consensus 196 TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSg-------nsh--llLs~LikHLDhKnv~~~P~~q~~IV~ 266 (898)
.+..++..++.+++.+ |.- ..-|...|. .+.+..+ ..| -++..|++-|++.. .++.+|...++
T Consensus 451 ~~~~~l~~l~~~l~~~--~~v-~~~a~~al~---~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d--~~~~vr~~a~~ 522 (861)
T 2bpt_A 451 HLPGVVQACLIGLQDH--PKV-ATNCSWTII---NLVEQLAEATPSPIYNFYPALVDGLIGAANRID--NEFNARASAFS 522 (861)
T ss_dssp THHHHHHHHHHHHTSC--HHH-HHHHHHHHH---HHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC--CGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--hHH-HHHHHHHHH---HHHHhcccccchhhHHHHHHHHHHHHHHHhCcC--cchHHHHHHHH
Confidence 5778899999999764 322 344445555 4454322 122 35777777776522 24789999999
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCC-CchhH-HHHHHh
Q 046182 267 VATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGD-TRPLF-DMMAMT 344 (898)
Q Consensus 267 V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D-~qpi~-dMMaIm 344 (898)
++..++........+.+-.++..++..|.+.+..........+.+....++..+.+||+.+.+++|+ ..|.. .+|-.+
T Consensus 523 al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 602 (861)
T 2bpt_A 523 ALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLF 602 (861)
T ss_dssp HHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred HHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999999876554455556666677777766432111101111234567888999999999999975 33322 233333
Q ss_pred hccCCCCcc-cccchhhHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHccCCCchhhHHHHHHHHHhh
Q 046182 345 LEKLPSSGV-IARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 345 LenIp~~~~-vartti~a~~~ta~il~Sl~~vs~~~kaFPeall~qLL~amlhpD~EtRv~ah~Ifs~lL 413 (898)
++-+..... ..| ..+...+..++..+.. . -..+=+.++..|+...-++++++|..+-.++..+.
T Consensus 603 ~~~l~~~~~~~v~--~~~~~~l~~l~~~~~~-~--~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 603 FRLLEKKDSAFIE--DDVFYAISALAASLGK-G--FEKYLETFSPYLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp HHHHHSTTGGGTH--HHHHHHHHHHHHHHGG-G--GHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCcHH--HHHHHHHHHHHHHHhh-h--HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 232222111 111 1111122222222111 0 00111335555555556788999999998888765
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=88.96 E-value=8.9 Score=44.94 Aligned_cols=206 Identities=13% Similarity=0.112 Sum_probs=110.5
Q ss_pred ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcC-------------------CceehHHHHHhhhccCCCCC
Q 046182 196 TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSG-------------------NQQLILASVIHHLDHKNVSH 256 (898)
Q Consensus 196 TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSg-------------------nshllLs~LikHLDhKnv~~ 256 (898)
.+..++..++..++++ +.- ..-|..+|. .+.+..+ +-.-++..|++.++... .+
T Consensus 448 ~l~~~l~~l~~~l~~~--~~v-~~~a~~al~---~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~-~~ 520 (876)
T 1qgr_A 448 YLAPLLQCLIEGLSAE--PRV-ASNVCWAFS---SLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD-GH 520 (876)
T ss_dssp THHHHHHHHHHHTTSC--HHH-HHHHHHHHH---HHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS-SC
T ss_pred HHHHHHHHHHHHHcCC--HHH-HHHHHHHHH---HHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcC-cc
Confidence 5677888899999763 211 333445555 4554211 22346777777776532 24
Q ss_pred CchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCC--CC
Q 046182 257 DPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIG--DT 334 (898)
Q Consensus 257 ~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~--D~ 334 (898)
++.+|...+++++.++........+.+-..+..++..|...+.......+..+......++..+..|++.++..+| +.
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 5678999999999999876654335555555555555555443221111111111225678899999999999987 33
Q ss_pred chhHH-HHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCCCc--HHHHHHHHHHccCC-CchhhHHHHHHHH
Q 046182 335 RPLFD-MMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFP--EALLVQILKAMLHP-NVETRVGAHQIFS 410 (898)
Q Consensus 335 qpi~d-MMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~kaFP--eall~qLL~amlhp-D~EtRv~ah~Ifs 410 (898)
.|.+. +|-.+++-+............+...+..++..+ +....| +.++..|+...-.+ ++++|..|-..+.
T Consensus 601 ~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~ 675 (876)
T 1qgr_A 601 LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL-----GGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVG 675 (876)
T ss_dssp HTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH-----GGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 33322 222222222211100000112222233333221 111122 45666666665566 7889999888887
Q ss_pred Hhh
Q 046182 411 VLL 413 (898)
Q Consensus 411 ~lL 413 (898)
.+.
T Consensus 676 ~l~ 678 (876)
T 1qgr_A 676 DLC 678 (876)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 4
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=86.58 E-value=3 Score=43.05 Aligned_cols=134 Identities=14% Similarity=0.170 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhH-hhh---ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhc------CCceehHHHHHhh
Q 046182 179 WARICIQRMVDLAK-ETT---TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETS------GNQQLILASVIHH 248 (898)
Q Consensus 179 wA~vCLrnma~lar-eat---TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqS------gnshllLs~LikH 248 (898)
-|-.||..|++=.+ ..+ ....+|-++|..|...+. .-..-|..++. .+++.. ++--.++..|+..
T Consensus 80 ~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~--~V~~aa~~al~---~i~~~~~~~~~~~~l~~ll~~l~~~ 154 (249)
T 2qk1_A 80 LAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKP--SVIEAIRKALL---TICKYYDPLASSGRNEDMLKDILEH 154 (249)
T ss_dssp HHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCH--HHHHHHHHHHH---HHHHHSCTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHH---HHHHHccccccCCcHHHHHHHHHHH
Confidence 45668888885322 222 345688899999987651 11123444444 777755 3233688888888
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHH
Q 046182 249 LDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSV-SDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEI 327 (898)
Q Consensus 249 LDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~ai-sdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~ 327 (898)
|+|| +|++|...+..++.++..++.. .-.+...+ ..++.+|-+.+. +.+..++++-.+||+.+
T Consensus 155 l~~k----~~~vk~~al~~l~~~~~~~~~~-~~~l~~~l~~~iip~l~~~l~-----------D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 155 MKHK----TPQIRMECTQLFNASMKEEKDG-YSTLQRYLKDEVVPIVIQIVN-----------DTQPAIRTIGFESFAIL 218 (249)
T ss_dssp TTCS----SHHHHHHHHHHHHHHHHHCCSC-SHHHHHHHTTTHHHHHHHHHT-----------CSSHHHHHHHHHHHHHH
T ss_pred HcCC----ChHHHHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHHHHHHhc-----------CCCHHHHHHHHHHHHHH
Confidence 8994 6899999999999999865542 11233456 677777777772 23678999999999999
Q ss_pred hccCCC
Q 046182 328 AKGIGD 333 (898)
Q Consensus 328 a~kv~D 333 (898)
++.+|+
T Consensus 219 ~~~vG~ 224 (249)
T 2qk1_A 219 IKIFGM 224 (249)
T ss_dssp HHHHCS
T ss_pred HHHhCH
Confidence 999986
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=85.27 E-value=4.5 Score=47.43 Aligned_cols=219 Identities=11% Similarity=0.100 Sum_probs=115.3
Q ss_pred HHHHHHHHhHhhh--ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhc--CCceehHHHHHhhhccCCCCCCc
Q 046182 183 CIQRMVDLAKETT--TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETS--GNQQLILASVIHHLDHKNVSHDP 258 (898)
Q Consensus 183 CLrnma~lareat--TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqS--gnshllLs~LikHLDhKnv~~~P 258 (898)
|+..+++-.++.+ -+..++..++..+.+...|.- ...|+.++.++...+... .+-.-++..|++.|...+ .++
T Consensus 631 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v-r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~ 707 (876)
T 1qgr_A 631 AVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQV-CLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEN--VHR 707 (876)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHH-HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTT--SCG
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCcc--ccH
Confidence 4555553323333 356677777778776655554 556777777444333210 123456777777776421 246
Q ss_pred hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCC-----
Q 046182 259 QLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGD----- 333 (898)
Q Consensus 259 ~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D----- 333 (898)
.+|..++..+..++......-.+ .+..++..|.+.++...+..+....+....+++++.+++..+.+.+++
T Consensus 708 ~~~~~~~~~l~~i~~~~g~~~~~----~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~ 783 (876)
T 1qgr_A 708 SVKPQILSVFGDIALAIGGEFKK----YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENV 783 (876)
T ss_dssp GGHHHHHHHHHHHHHHHGGGGGG----GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSC
T ss_pred HhhHHHHHHHHHHHHHhchhHHH----HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 79999999999998865544223 334455555555543221100000122347888889988887776644
Q ss_pred ------CchhHHHHHHhhccCC-CC--cccccchhhHHHHHHHHHHHHhh-hccCCCCCcHHHHHHHHH-HccCCCchhh
Q 046182 334 ------TRPLFDMMAMTLEKLP-SS--GVIARATLGSLIILAHMISVASI-SSRSQQVFPEALLVQILK-AMLHPNVETR 402 (898)
Q Consensus 334 ------~qpi~dMMaImLenIp-~~--~~vartti~a~~~ta~il~Sl~~-vs~~~kaFPeall~qLL~-amlhpD~EtR 402 (898)
..|....+.-.+.++- .. ....| ..|...+..++..... .. ...|-+.++++|+. ..-.+|+++|
T Consensus 784 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr--~~a~~~l~~l~~~~~~~~~--~~~~~~~~i~~ll~~~l~~~~~~~r 859 (876)
T 1qgr_A 784 HPDVMLVQPRVEFILSFIDHIAGDEDHTDGVV--ACAAGLIGDLCTAFGKDVL--KLVEARPMIHELLTEGRRSKTNKAK 859 (876)
T ss_dssp CGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHH--HHHHHHHHHHHHHHCTHHH--HHHHTSHHHHHHHHHHHHCSCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHHHHHhCcHHH--HHHHhcHHHHHHHHHHhhcCCHhHH
Confidence 2222222222222221 11 11111 1233334444433322 00 00113457788888 6668999999
Q ss_pred HHHHHHHHHh
Q 046182 403 VGAHQIFSVL 412 (898)
Q Consensus 403 v~ah~Ifs~l 412 (898)
-.|-.....+
T Consensus 860 ~~a~~a~~~~ 869 (876)
T 1qgr_A 860 TLARWATKEL 869 (876)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887665544
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=85.17 E-value=1.5 Score=54.56 Aligned_cols=292 Identities=13% Similarity=0.185 Sum_probs=139.8
Q ss_pred hcCcchhhhhhhhHHHHhhhcccccccchhhhhhhhcCCCCCCCCcccccCCCCCcccceeeeccCCC-CCCCCCCcCCC
Q 046182 75 SLRASSLQCLSAMVWFMAEFSCIFADFDEIVSATLDNYEPDTCSEDDDERGEPHHNWVDEVVRCEGRG-AAAGSDTGPSS 153 (898)
Q Consensus 75 ~lr~a~LQ~Lstmv~Fm~efS~I~~d~D~~VS~flm~y~~~~~~~~~~~~r~~g~~gvqgVvrk~~~d-~~~m~kivPsl 153 (898)
..|..++.+|+..+.++++ ..|+.++..++.......+ ...|..-.+.+..+++.-+.. .+++..++|.+
T Consensus 190 ~vR~~a~~al~~l~~~~~~-----~~~~~~l~~l~~~L~~~~~----~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~l 260 (1230)
T 1u6g_C 190 AVRKRTIIALGHLVMSCGN-----IVFVDLIEHLLSELSKNDS----MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLV 260 (1230)
T ss_dssp HHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTCS----SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHhccCCc----hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3566677777777655542 1266666666533321111 123344455555544432221 15677777765
Q ss_pred --cccCCCCCCCCCCCCCccccCChHHHHHHHHHHHHHHhHhhh--ccccchhhhhhhccC-------------------
Q 046182 154 --MMIRPRPEKKDPSALTREEVETPKVWARICIQRMVDLAKETT--TMRRVLDPMFTYFDS------------------- 210 (898)
Q Consensus 154 --nmq~~~~~~~~~~~~~~ee~enP~~wA~vCLrnma~lareat--TiRrVLeplf~yfD~------------------- 210 (898)
.++. +.+.-..-+-.|+..+++..++.. .+..++..++.++..
T Consensus 261 l~~l~d--------------~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~ 326 (1230)
T 1u6g_C 261 VKFCNV--------------DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD 326 (1230)
T ss_dssp HHHHSS--------------CCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------
T ss_pred HHHhcC--------------CCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccccccc
Confidence 2331 111222334445555554333332 345566666666521
Q ss_pred -----------------CCCcccCCchHHHHHHHHHHHHHhcCC-----ceehHHHHHhhhccCCCCCCchhHHHHHHHH
Q 046182 211 -----------------RRQWIPRQGLAMIVLSDMAYLMETSGN-----QQLILASVIHHLDHKNVSHDPQLKSYVIQVA 268 (898)
Q Consensus 211 -----------------h~lWsp~~gfA~~vl~~mq~iMeqSgn-----shllLs~LikHLDhKnv~~~P~~q~~IV~V~ 268 (898)
...|.. ..-|..+|. .+....+. -.-++..|++++.+ .++.+|..+++.+
T Consensus 327 ~~~~~~~~~~~~~~~~~d~~~~v-R~~A~~~l~---~l~~~~~~~~~~~~~~l~~~l~~~l~d----~~~~Vr~~a~~~l 398 (1230)
T 1u6g_C 327 GGDDDDQGSDDEYSDDDDMSWKV-RRAAAKCLD---AVVSTRHEMLPEFYKTVSPALISRFKE----REENVKADVFHAY 398 (1230)
T ss_dssp ------------------CTTHH-HHHHHHHHH---HHHTTCCTTHHHHHTTTHHHHHSTTSC----SSSHHHHHHHHHH
T ss_pred ccccchhhcccccccccccCHHH-HHHHHHHHH---HHHHhchhHHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHH
Confidence 112332 223555555 33332221 12345667777744 3688999999998
Q ss_pred HHHHHHhhc---------------ccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCC
Q 046182 269 TALARQIRS---------------GMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGD 333 (898)
Q Consensus 269 t~la~~ak~---------------~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D 333 (898)
..++..... +....+-..+..++..+.+.++ + .+...+.+...+|++++...|+
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~----~-------~~~~vr~~~~~~L~~l~~~~~~ 467 (1230)
T 1u6g_C 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK----E-------KSVKTRQCCFNMLTELVNVLPG 467 (1230)
T ss_dssp HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTT----C-------SCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhc----c-------CCHHHHHHHHHHHHHHHHHchh
Confidence 888876542 1111222233333333333332 1 1235567889999999998765
Q ss_pred C--chhHHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCCC---cHHHHHHHHHHccCCCchhhHHHHHH
Q 046182 334 T--RPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVF---PEALLVQILKAMLHPNVETRVGAHQI 408 (898)
Q Consensus 334 ~--qpi~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~kaF---Peall~qLL~amlhpD~EtRv~ah~I 408 (898)
. +-+..++-.+++.+-......+....+...+..++ .. .+...| =+.++..|+...-.+++.+|..|..+
T Consensus 468 ~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~----~~-~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~ 542 (1230)
T 1u6g_C 468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL----CN-HSPQVFHPHVQALVPPVVACVGDPFYKITSEALLV 542 (1230)
T ss_dssp TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHH----HS-SCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHH----Hh-CCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 3 22344455554544433221122222333333332 21 111111 12345556665555666666666666
Q ss_pred HHHhh
Q 046182 409 FSVLL 413 (898)
Q Consensus 409 fs~lL 413 (898)
+..+.
T Consensus 543 l~~l~ 547 (1230)
T 1u6g_C 543 TQQLV 547 (1230)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=84.25 E-value=6.5 Score=48.91 Aligned_cols=206 Identities=15% Similarity=0.137 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHhHhhhccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcC-----------CceehHHHHH
Q 046182 178 VWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSG-----------NQQLILASVI 246 (898)
Q Consensus 178 ~wA~vCLrnma~lareatTiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSg-----------nshllLs~Li 246 (898)
..|-.||.++++-..+ ..+..++..++..+...+.-. ..-|..++. .++..-+ +..-++..|+
T Consensus 66 ~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~v--R~~a~~~L~---~i~~~l~~~~~~~~~~~~~~~~llp~L~ 139 (1230)
T 1u6g_C 66 NLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQL--RDISSIGLK---TVIGELPPASSGSALAANVCKKITGRLT 139 (1230)
T ss_dssp HHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHH--HHHHHHHHH---HHHHHCC-----CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHH--HHHHHHHHH---HHHHhCCCcccccchHHHHHHHHHHHHH
Confidence 3567788888832211 245667777887775433211 233566666 5555333 2457788888
Q ss_pred hhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHH
Q 046182 247 HHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLE 326 (898)
Q Consensus 247 kHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq 326 (898)
+-++. ..++.+|.+.++++..++......-.| .+..++..|-+.+. + .+...|.+...||+.
T Consensus 140 ~~l~~---~~~~~~~~~al~~l~~~~~~~~~~l~~----~~~~ll~~l~~~L~----~-------~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 140 SAIAK---QEDVSVQLEALDIMADMLSRQGGLLVN----FHPSILTCLLPQLT----S-------PRLAVRKRTIIALGH 201 (1230)
T ss_dssp HHHSC---CSCHHHHHHHHHHHHHHHHHTCSSCTT----THHHHHHHHGGGGG----C-------SSHHHHHHHHHHHHH
T ss_pred HHHcC---CCchHHHHHHHHHHHHHHHHhHhHHHH----HHHHHHHHHHHHHc----C-------CcHHHHHHHHHHHHH
Confidence 88863 246789999999999998764433224 34566666666653 1 135789999999999
Q ss_pred HhccCCCC--chhHHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHccCCCchhhHH
Q 046182 327 IAKGIGDT--RPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVG 404 (898)
Q Consensus 327 ~a~kv~D~--qpi~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~kaFPeall~qLL~amlhpD~EtRv~ 404 (898)
++...++. ..+...+.-.|.+-.. ....+ .+...+..|+...+.. -..+=+.++..++..+-.+|+++|-.
T Consensus 202 l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~---~a~~~l~~l~~~~~~~---~~~~l~~l~~~ll~~l~d~~~~vR~~ 274 (1230)
T 1u6g_C 202 LVMSCGNIVFVDLIEHLLSELSKNDS-MSTTR---TYIQCIAAISRQAGHR---IGEYLEKIIPLVVKFCNVDDDELREY 274 (1230)
T ss_dssp HTTTC----CTTHHHHHHHHHHHTCS-SCSCT---THHHHHHHHHHHSSGG---GTTSCTTHHHHHHHHHSSCCTTTHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhccCCc-hhHHH---HHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 99998763 3322222222222111 11122 2333344444443331 11122457777888888999999999
Q ss_pred HHHHHHHhhc
Q 046182 405 AHQIFSVLLI 414 (898)
Q Consensus 405 ah~Ifs~lL~ 414 (898)
+...|..+..
T Consensus 275 a~~~l~~l~~ 284 (1230)
T 1u6g_C 275 CIQAFESFVR 284 (1230)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888874
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=83.08 E-value=0.7 Score=51.39 Aligned_cols=203 Identities=9% Similarity=0.019 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHhHhhh--ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcC--CceehHHHHHhhhccC
Q 046182 177 KVWARICIQRMVDLAKETT--TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSG--NQQLILASVIHHLDHK 252 (898)
Q Consensus 177 ~~wA~vCLrnma~lareat--TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSg--nshllLs~LikHLDhK 252 (898)
..-|..+|.+++ .... .++..+-|++.-+-.++.|.. ...|..+|. .+....+ ...-++..+.+-+.+
T Consensus 104 R~~a~~~L~~l~---~~~~~~~~~~~l~~~l~~l~~~~~~~~-R~~a~~~l~---~~~~~~~~~~~~~l~~~l~~l~~d- 175 (588)
T 1b3u_A 104 RDKAVESLRAIS---HEHSPSDLEAHFVPLVKRLAGGDWFTS-RTSACGLFS---VCYPRVSSAVKAELRQYFRNLCSD- 175 (588)
T ss_dssp HHHHHHHHHHHH---TTSCHHHHHHTHHHHHHHHHTCSSHHH-HHHHGGGHH---HHTTTSCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHH---HHHHhcCHHHHHHHHHHHHHHhCC-
Confidence 334555666665 2222 456667777766655554444 555555555 3332222 111234444443333
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCC
Q 046182 253 NVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIG 332 (898)
Q Consensus 253 nv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~ 332 (898)
.+|.+|...++.+..++........ ...++..|...+ .+ .+...+.+..+||+.++..+|
T Consensus 176 ---~~~~VR~~a~~~l~~l~~~~~~~~~------~~~l~~~l~~~~----~d-------~~~~vr~~a~~~l~~l~~~~~ 235 (588)
T 1b3u_A 176 ---DTPMVRRAAASKLGEFAKVLELDNV------KSEIIPMFSNLA----SD-------EQDSVRLLAVEACVNIAQLLP 235 (588)
T ss_dssp ---SCHHHHHHHHHHHHHHHHTSCHHHH------HHTHHHHHHHHH----TC-------SCHHHHTTHHHHHHHHHHHSC
T ss_pred ---CCHHHHHHHHHHHHHHHHHhcHHhH------HHHHHHHHHHHh----cC-------CcHHHHHHHHHHHHHHHHhCC
Confidence 4789999999999988875433211 222333332222 11 234678888999999999987
Q ss_pred CCchhHHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHccCCCchhhHHHHHHHHHh
Q 046182 333 DTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVGAHQIFSVL 412 (898)
Q Consensus 333 D~qpi~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~kaFPeall~qLL~amlhpD~EtRv~ah~Ifs~l 412 (898)
+..-...++-.+...+.......| ..+...+..+...+.. ..+.+.++..|+..+-.+|+++|..|-.-|..+
T Consensus 236 ~~~~~~~~~~~l~~~~~d~~~~vR--~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 308 (588)
T 1b3u_A 236 QEDLEALVMPTLRQAAEDKSWRVR--YMVADKFTELQKAVGP-----EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 308 (588)
T ss_dssp HHHHHHHTHHHHHHHHTCSSHHHH--HHHHHTHHHHHHHHCH-----HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHhCc-----ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 643222222222121111111112 1222223333322211 113344566677777889999999999888877
Q ss_pred hc
Q 046182 413 LI 414 (898)
Q Consensus 413 L~ 414 (898)
..
T Consensus 309 ~~ 310 (588)
T 1b3u_A 309 CE 310 (588)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=81.20 E-value=7.2 Score=45.59 Aligned_cols=142 Identities=12% Similarity=0.104 Sum_probs=89.0
Q ss_pred HHHHHHHHHhHhhh--ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcC-----CceehHHHHHhhhccCCC
Q 046182 182 ICIQRMVDLAKETT--TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSG-----NQQLILASVIHHLDHKNV 254 (898)
Q Consensus 182 vCLrnma~lareat--TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSg-----nshllLs~LikHLDhKnv 254 (898)
.|+..+++-..+.+ .+..++..++..+. +.-|.- ..-|+.++. .+....| +-+-++..+++.|++.+
T Consensus 620 ~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-~~~~~v-r~~a~~~l~---~l~~~~~~~~~~~~~~l~~~l~~~l~~~~- 693 (861)
T 2bpt_A 620 YAISALAASLGKGFEKYLETFSPYLLKALN-QVDSPV-SITAVGFIA---DISNSLEEDFRRYSDAMMNVLAQMISNPN- 693 (861)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHHHH-CTTSHH-HHHHHHHHH---HHHHHTGGGGHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccHHH-HHHHHHHHH---HHHHHhchhccchHHHHHHHHHHHhCCcc-
Confidence 35566664444444 36678888888884 344443 334566666 3444222 34567888888887633
Q ss_pred CCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCCC
Q 046182 255 SHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDT 334 (898)
Q Consensus 255 ~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D~ 334 (898)
.++.+|..++..+..++..... .....++.++..|.+.++...+..+....+....+++++.++++.++..+++.
T Consensus 694 -~~~~vr~~~~~~l~~l~~~~~~----~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~ 768 (861)
T 2bpt_A 694 -ARRELKPAVLSVFGDIASNIGA----DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK 768 (861)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -ccHhhhHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3588999999999999987543 34555666777776666543221000001233568899999999999999863
No 10
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=80.23 E-value=16 Score=36.46 Aligned_cols=178 Identities=12% Similarity=0.215 Sum_probs=99.5
Q ss_pred hhhhhhhccCCCCcccCCchHHHHHHHHHHHHHh-----cCCceehHHHHHhhhc-cCCCCCCchhHHHHHHHHHHHHHH
Q 046182 201 LDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMET-----SGNQQLILASVIHHLD-HKNVSHDPQLKSYVIQVATALARQ 274 (898)
Q Consensus 201 Leplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeq-----SgnshllLs~LikHLD-hKnv~~~P~~q~~IV~V~t~la~~ 274 (898)
-..++..++ ...|.-+.+ |+..|. .+++. .++..-++..|.+-|. . +++.++...++++..++..
T Consensus 17 ~~~l~~~l~-s~~w~~R~~-a~~~L~---~l~~~~~~~~~~~~~~i~~~L~~~l~kd----~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 17 PKDFYDKLE-EKKWTLRKE-SLEVLE---KLLTDHPKLENGEYGALVSALKKVITKD----SNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp CTTHHHHHT-CSSHHHHHH-HHHHHH---HHHHHCSSBCCCCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhhhc-cCCHHHHHH-HHHHHH---HHHccCCCCCCCCHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHH
Confidence 334666664 567887444 444444 55554 2233345777777773 3 4778899999999999975
Q ss_pred hhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHhhccCCCCccc
Q 046182 275 IRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVI 354 (898)
Q Consensus 275 ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D~qpi~dMMaImLenIp~~~~v 354 (898)
.+..-.+.+-.++..| -+.+. +.+...+++...+|..+....+ + ..+|-.+++-+.+....
T Consensus 88 l~~~~~~~~~~ilp~l----l~~l~-----------d~~~~vr~~a~~aL~~~~~~~~-~---~~ll~~l~~~l~~~~~~ 148 (242)
T 2qk2_A 88 LAKRFSNYASACVPSL----LEKFK-----------EKKPNVVTALREAIDAIYASTS-L---EAQQESIVESLSNKNPS 148 (242)
T ss_dssp HGGGGHHHHHHHHHHH----HHGGG-----------CCCHHHHHHHHHHHHHHHTTSC-H---HHHHHHHHHHTTCSCHH
T ss_pred HhhhHHHHHHHHHHHH----HHHHc-----------CCCHHHHHHHHHHHHHHHHcCC-H---HHHHHHHHHHHcCCChH
Confidence 5432223333333333 33321 1246788999999999988764 3 33344443444332211
Q ss_pred ccchhhHHHHHHHHHHHHhhhccCCCCCc----HHHHHHHHHHccCCCchhhHHHHHHHHHhh
Q 046182 355 ARATLGSLIILAHMISVASISSRSQQVFP----EALLVQILKAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 355 artti~a~~~ta~il~Sl~~vs~~~kaFP----eall~qLL~amlhpD~EtRv~ah~Ifs~lL 413 (898)
.| ..+... +..++... +...+. ..++..|+..+-.+++++|-.|...+..+.
T Consensus 149 vr--~~~l~~----l~~~l~~~-~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 149 VK--SETALF----IARALTRT-QPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HH--HHHHHH----HHHHHTTC-CGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHH----HHHHHHHc-CCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 12 222222 33222211 111222 245555666777899999999999888765
No 11
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=80.07 E-value=23 Score=41.04 Aligned_cols=188 Identities=12% Similarity=0.089 Sum_probs=96.9
Q ss_pred ccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHH--hcCCceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHH
Q 046182 196 TMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLME--TSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALAR 273 (898)
Q Consensus 196 TiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMe--qSgnshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~ 273 (898)
-+.+-+..+|..+++.+ ..+....+. .+.. +..|-..++..|++|+.+ .++.+|..++..+..+|.
T Consensus 347 ~~~~~~~~i~~~l~d~d-----~~Ir~~ale---lL~~l~~~~nv~~iv~eL~~~l~~----~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 347 AVQRHRSTIVDCLKDLD-----VSIKRRAME---LSFALVNGNNIRGMMKELLYFLDS----CEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHGGGHHHHHHGGGSSC-----HHHHHHHHH---HHHHHCCSSSTHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCC-----hhHHHHHHH---HHHHHcccccHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHH
Confidence 34555556666665433 222222222 2222 344667789999999987 578899999988888877
Q ss_pred HhhcccchHHHHHHHHHHHHHHHhHhhhc------------cccCcc--------c-----hhHHHHHHHHHHHHHHHHh
Q 046182 274 QIRSGMVLVEIGSVSDLCRHLRKSFQATV------------ESVGEQ--------E-----SNLNILLRNSIEDCLLEIA 328 (898)
Q Consensus 274 ~ak~~ss~avl~aisdLlrHLRkSi~~s~------------~~~~~~--------~-----~~~n~~lQ~Avi~cLgq~a 328 (898)
.-. +..-..+..|++-|+..-..-. ...+.. + ...+... .++..||||++
T Consensus 415 k~~----~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~-~~~~wilGEy~ 489 (618)
T 1w63_A 415 KYA----PSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLV-QVAAWCIGEYG 489 (618)
T ss_dssp SSC----CCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHH-HHHHHHHHHHH
T ss_pred HhC----ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHH-HHHHHHHhhhH
Confidence 321 1111222222222222111000 000000 0 0112333 47899999999
Q ss_pred ccCCCC----------c--hhHHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCCCc--HHHHHHHHH-H
Q 046182 329 KGIGDT----------R--PLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFP--EALLVQILK-A 393 (898)
Q Consensus 329 ~kv~D~----------q--pi~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~kaFP--eall~qLL~-a 393 (898)
..+.+. . .+.+.+..++.+- ... ...-++++.++.++..+ +| ...+.++|. .
T Consensus 490 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~---------~~vr~~~lta~~Kl~~~---~~~~~~~l~~~L~~~ 556 (618)
T 1w63_A 490 DLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MST---------SVTRGYALTAIMKLSTR---FTCTVNRIKKVVSIY 556 (618)
T ss_dssp HHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCC---------HHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHH
T ss_pred HHhcccccccccccCCCHHHHHHHHHHHHhcc-CCC---------HHHHHHHHHHHHHHHHh---CcchHHHHHHHHHHh
Confidence 887551 1 1233333333321 111 11122346666666544 34 345555555 4
Q ss_pred ccCCCchhhHHHHHHHHHhh
Q 046182 394 MLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 394 mlhpD~EtRv~ah~Ifs~lL 413 (898)
.-++|+|+|--|...+..+-
T Consensus 557 ~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 557 GSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp TTCSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHc
Confidence 56788899999998777654
No 12
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=79.94 E-value=12 Score=42.95 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=85.7
Q ss_pred hcCCceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH----HHH--------hHhhh
Q 046182 234 TSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRH----LRK--------SFQAT 301 (898)
Q Consensus 234 qSgnshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrH----LRk--------Si~~s 301 (898)
+..|-..++..|..++.+ .++.+|..++..+..++..-.. .....+.++-+++++ .++ =++..
T Consensus 347 ~~~nv~~iv~~L~~~l~~----~d~~~r~~~v~aI~~la~~~~~-~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~ 421 (591)
T 2vgl_B 347 SQANIAQVLAELKEYATE----VDVDFVRKAVRAIGRCAIKVEQ-SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY 421 (591)
T ss_dssp CSSTHHHHHHHHHHHTTS----SCHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred ChhhHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHhChh-HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHC
Confidence 344666788888888765 4778888888777776653110 012223333333221 111 11100
Q ss_pred ccccCc--c------chhHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHh
Q 046182 302 VESVGE--Q------ESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVAS 373 (898)
Q Consensus 302 ~~~~~~--~------~~~~n~~lQ~Avi~cLgq~a~kv~D~qpi~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~ 373 (898)
.+.... . +...+.....++.-+|||++..+++.. +.+-.+++++...+...| ++++.++.
T Consensus 422 p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~---~~l~~l~~~~~~~~~~vr---------~~~l~a~~ 489 (591)
T 2vgl_B 422 PNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNAD---ELLESFLEGFHDESTQVQ---------LTLLTAIV 489 (591)
T ss_dssp CSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHH---HHHHHHSTTCSSSCHHHH---------HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHH---HHHHHHHHhhccCCHHHH---------HHHHHHHH
Confidence 000000 0 011234557888999999999998743 445455566554332112 13355566
Q ss_pred hhccCCCCCcH---HHHHHHHHHcc--CCCchhhHHHHHHHHHh
Q 046182 374 ISSRSQQVFPE---ALLVQILKAML--HPNVETRVGAHQIFSVL 412 (898)
Q Consensus 374 ~vs~~~kaFPe---all~qLL~aml--hpD~EtRv~ah~Ifs~l 412 (898)
++... +|+ ..+..+|.... ++|+|+|--|...+..|
T Consensus 490 Kl~~~---~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 490 KLFLK---KPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHTT---CCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHhc---CchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 66543 343 56666777643 47889999887665544
No 13
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=75.64 E-value=7.8 Score=39.96 Aligned_cols=139 Identities=13% Similarity=0.099 Sum_probs=86.2
Q ss_pred CChHHHH--HHHHHHHHHHhHhhh--------ccccchhhhhh-hccCCCCcccCCchHHHHHHHHHHHHHhcCCceehH
Q 046182 174 ETPKVWA--RICIQRMVDLAKETT--------TMRRVLDPMFT-YFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQQLIL 242 (898)
Q Consensus 174 enP~~wA--~vCLrnma~lareat--------TiRrVLeplf~-yfD~h~lWsp~~gfA~~vl~~mq~iMeqSgnshllL 242 (898)
.|+.+.. -.||..+++.+..++ .+..++..++. .+.+.+.-. ..-|+.++. .+++.......++
T Consensus 67 sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~--~~~a~~~l~---~~~~~~~~~~~~~ 141 (278)
T 4ffb_C 67 SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATT--KTQSMSCIL---SLCGLDTSITQSV 141 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHH--HHHHHHHHH---HHHHTSSSSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHH--HHHHHHHHH---HHHHhcCcHHHHH
Confidence 3555543 347777775332222 23344555553 344333100 123556665 7777776777889
Q ss_pred HHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHH
Q 046182 243 ASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIED 322 (898)
Q Consensus 243 s~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~ 322 (898)
..++.-|.| ++|++|.+.++.+..+...-..... ..-..+..+++.|.+.+. +-+...+++-.+
T Consensus 142 e~l~~~l~~----Knpkv~~~~l~~l~~~l~~fg~~~~-~~k~~l~~i~~~l~k~l~-----------d~~~~VR~aA~~ 205 (278)
T 4ffb_C 142 ELVIPFFEK----KLPKLIAAAANCVYELMAAFGLTNV-NVQTFLPELLKHVPQLAG-----------HGDRNVRSQTMN 205 (278)
T ss_dssp HHHGGGGGC----SCHHHHHHHHHHHHHHHHHHTTTTC-CHHHHHHHHGGGHHHHHT-----------CSSHHHHHHHHH
T ss_pred HHHHHHHhc----cCHHHHHHHHHHHHHHHHHhCCCcC-CchhHHHHHHHHHHHHHh-----------CCcHHHHHHHHH
Confidence 999999999 5799999999999999886433322 223345566666666663 236789999999
Q ss_pred HHHHHhccCCC
Q 046182 323 CLLEIAKGIGD 333 (898)
Q Consensus 323 cLgq~a~kv~D 333 (898)
+++++-+.+|+
T Consensus 206 l~~~ly~~~G~ 216 (278)
T 4ffb_C 206 LIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHTC---
T ss_pred HHHHHHHHhCc
Confidence 99999998884
No 14
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=75.41 E-value=9.5 Score=39.33 Aligned_cols=141 Identities=12% Similarity=0.025 Sum_probs=86.2
Q ss_pred CCchhHHHHHHHHHH-HHHHhhcccchHH---HHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccC
Q 046182 256 HDPQLKSYVIQVATA-LARQIRSGMVLVE---IGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGI 331 (898)
Q Consensus 256 ~~P~~q~~IV~V~t~-la~~ak~~ss~av---l~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv 331 (898)
+++..|...++-+.. ++. + .|-+ -+-+.++++.|++.+.. +-|...+.+-.+||++||+++
T Consensus 28 ~~w~eRk~al~~L~~~~~~---~--~~~i~~~~~~~~~~~~~L~~~l~~----------D~n~~v~~~A~~al~~la~~l 92 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLS---Q--TKKLKSTSQNYSNLLGIYGHIIQK----------DANIQAVALAAQSVELICDKL 92 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGG---G--CCCBCCTTCCCHHHHHHHHHHHHH----------CSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh---c--CCccccCcccHHHHHHHHHHHhcc----------CCCHHHHHHHHHHHHHHHHhc
Confidence 466667665544444 432 2 1111 12245777888887732 236677889999999999999
Q ss_pred C--CCc-hhH-HHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCCC--cHHHHHHHHHHccCCCchhhHHH
Q 046182 332 G--DTR-PLF-DMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVF--PEALLVQILKAMLHPNVETRVGA 405 (898)
Q Consensus 332 ~--D~q-pi~-dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~kaF--Peall~qLL~amlhpD~EtRv~a 405 (898)
+ ..+ +-. ..+-.+++++-......|. .+.+-+..++.++.. .... ++.+++.|+..+-|+++.+|..+
T Consensus 93 ~~~~f~~~y~~~llp~ll~~l~dkk~~V~~--aa~~al~~i~~~~~~----~~~~~~l~~ll~~l~~~l~~k~~~vk~~a 166 (249)
T 2qk1_A 93 KTPGFSKDYVSLVFTPLLDRTKEKKPSVIE--AIRKALLTICKYYDP----LASSGRNEDMLKDILEHMKHKTPQIRMEC 166 (249)
T ss_dssp CTTTSCHHHHHHHHHHHHHGGGCCCHHHHH--HHHHHHHHHHHHSCT----TCTTCTTHHHHHHHHHHTTCSSHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHcCCCHHHHH--HHHHHHHHHHHHccc----cccCCcHHHHHHHHHHHHcCCChHHHHHH
Confidence 6 666 433 3455555887654322221 111112222322211 1122 67899999999999999999999
Q ss_pred HHHHHHhhcCCC
Q 046182 406 HQIFSVLLIPSP 417 (898)
Q Consensus 406 h~Ifs~lL~ps~ 417 (898)
...+..++....
T Consensus 167 l~~l~~~~~~~~ 178 (249)
T 2qk1_A 167 TQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHcC
Confidence 999999986544
No 15
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=75.18 E-value=3.4 Score=45.85 Aligned_cols=181 Identities=11% Similarity=0.103 Sum_probs=97.3
Q ss_pred ccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcC---CceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHH
Q 046182 198 RRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSG---NQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQ 274 (898)
Q Consensus 198 RrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSg---nshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ 274 (898)
..++..+...+. ...|.- ..-|+.++. .+...-| ....++..+++-|.+ .++.+|...++.+..++..
T Consensus 401 ~~~lp~l~~~~~-d~~~~v-r~~~~~~l~---~l~~~~~~~~~~~~l~~~l~~~l~d----~~~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 401 QSLLPAIVELAE-DAKWRV-RLAIIEYMP---LLAGQLGVEFFDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHHHHHHHHHHT-CSSHHH-HHHHHHHHH---HHHHHHCGGGCCHHHHHHHHHGGGC----SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCchH-HHHHHHHHH---HHHHHcCHHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHH
Confidence 445555555554 466766 444555555 4444333 222466777777765 3578999999888888876
Q ss_pred hhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHhhccCCCCccc
Q 046182 275 IRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVI 354 (898)
Q Consensus 275 ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D~qpi~dMMaImLenIp~~~~v 354 (898)
.... ..+..++..|.+.+ . +.+...+.+...|++.++..+|...-...++-.++..+-....
T Consensus 472 ~~~~------~~~~~llp~l~~~~----~-------~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~- 533 (588)
T 1b3u_A 472 FGKE------WAHATIIPKVLAMS----G-------DPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA- 533 (588)
T ss_dssp HCHH------HHHHHTHHHHHHTT----T-------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCH-
T ss_pred hCch------hHHHHHHHHHHHHh----h-------CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCc-
Confidence 4332 12344444444322 1 1245788899999999998876432122233333232222211
Q ss_pred ccchhhHHHH-HHHHHHHHhhhccCCCCCcHHHHHHHHHHccCCCchhhHHHHHHHHHh
Q 046182 355 ARATLGSLII-LAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVGAHQIFSVL 412 (898)
Q Consensus 355 artti~a~~~-ta~il~Sl~~vs~~~kaFPeall~qLL~amlhpD~EtRv~ah~Ifs~l 412 (898)
.++. ....+..+.... +...+++.++..|....-.+|+++|..|...+..+
T Consensus 534 ------~Vr~~a~~~l~~l~~~~-~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 534 ------NVRFNVAKSLQKIGPIL-DNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp ------HHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 1111 111122222211 11222334444455556788999999999988765
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=72.29 E-value=5.9 Score=38.65 Aligned_cols=187 Identities=11% Similarity=0.085 Sum_probs=101.6
Q ss_pred cchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHh-cC-----CceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHH
Q 046182 199 RVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMET-SG-----NQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALA 272 (898)
Q Consensus 199 rVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeq-Sg-----nshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la 272 (898)
.++++++..+.+.+ +.- ..-|..+|. .+... .. -.+-.+..|++.|.+ .++.+|...+.++..++
T Consensus 44 g~i~~L~~ll~~~~-~~v-~~~a~~~L~---~l~~~~~~~~~~~~~~~~i~~l~~ll~~----~~~~v~~~a~~~L~~l~ 114 (252)
T 4hxt_A 44 GGVEVLVKLLTSTD-SEV-QKEAARALA---NIASGPDEAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIA 114 (252)
T ss_dssp THHHHHHHHTTCSC-HHH-HHHHHHHHH---HHTTSCHHHHHHHHHTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhCCC-HHH-HHHHHHHHH---HHHcCChHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHH
Confidence 47889999998765 222 445555555 33321 11 112367888888886 46889998888888877
Q ss_pred HHh-hcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCCCchhHH---HHHHhhccC
Q 046182 273 RQI-RSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFD---MMAMTLEKL 348 (898)
Q Consensus 273 ~~a-k~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D~qpi~d---MMaImLenI 348 (898)
... ........-|++..|++.|+. .+...+.....+|+.++..-++...... .+-.+++-+
T Consensus 115 ~~~~~~~~~~~~~~~i~~L~~~l~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 179 (252)
T 4hxt_A 115 SGPDEAIKAIVDAGGVEVLVKLLTS---------------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL 179 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTC---------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHcC---------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHH
Confidence 411 111111112455555555541 1245788888899998875433211110 111111111
Q ss_pred CCCcccccchhhHHHHHHHHHHHHhhhccCCC-----CCcHHHHHHHHHHccCCCchhhHHHHHHHHHhhcCCCC
Q 046182 349 PSSGVIARATLGSLIILAHMISVASISSRSQQ-----VFPEALLVQILKAMLHPNVETRVGAHQIFSVLLIPSPI 418 (898)
Q Consensus 349 p~~~~vartti~a~~~ta~il~Sl~~vs~~~k-----aFPeall~qLL~amlhpD~EtRv~ah~Ifs~lL~ps~~ 418 (898)
..... . .....+..+-+++.+.. ..-...+..|+..+-++|+++|..|..++..|......
T Consensus 180 ~~~~~--~-------v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 180 TSTDS--E-------VQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp TCSCH--H-------HHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred CCCCH--H-------HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 11110 1 11111333334332211 11123556788888899999999999999999855444
No 17
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=70.54 E-value=87 Score=37.13 Aligned_cols=174 Identities=14% Similarity=0.166 Sum_probs=99.7
Q ss_pred CCchHHHHHHHHHHHHHhcC-C--c----eehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHH
Q 046182 217 RQGLAMIVLSDMAYLMETSG-N--Q----QLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSD 289 (898)
Q Consensus 217 ~~gfA~~vl~~mq~iMeqSg-n--s----hllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisd 289 (898)
+..|-..++.-+..|...-| + . .-++..+++.|.+ +.+.+|...+.++..++.....+-.+.+-.++.-
T Consensus 599 d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~----~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~ 674 (852)
T 4fdd_A 599 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD----KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPI 674 (852)
T ss_dssp CTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC----CChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45566655665556666443 1 1 2467777777876 4588999999999999976654444554445555
Q ss_pred HHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCC-CCchhHH-HHHHhhccCCCCcccccchh-hHHHHHH
Q 046182 290 LCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIG-DTRPLFD-MMAMTLEKLPSSGVIARATL-GSLIILA 366 (898)
Q Consensus 290 LlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~-D~qpi~d-MMaImLenIp~~~~vartti-~a~~~ta 366 (898)
|+++| . ..+...++....++|+++.++| +.+|... ++-.++..+.++. ..++.. .+..-+.
T Consensus 675 l~~~l----~-----------~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~-~~~~~~~~a~~~ig 738 (852)
T 4fdd_A 675 LGTNL----N-----------PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN-TPKTLLENTAITIG 738 (852)
T ss_dssp HHHTC----C-----------TTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS-CCHHHHHHHHHHHH
T ss_pred HHHHc----C-----------ccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC-CCchHHHHHHHHHH
Confidence 55444 1 1234556777889999998885 3444322 2222222222221 122111 1222334
Q ss_pred HHHHHHhhhccCCCCCcHHHHHHHHHHcc-CCCchhhHHHHHHHHHhh
Q 046182 367 HMISVASISSRSQQVFPEALLVQILKAML-HPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 367 ~il~Sl~~vs~~~kaFPeall~qLL~aml-hpD~EtRv~ah~Ifs~lL 413 (898)
++...-|... ..+=+.++++++.++- ..|.+.|--|.+=|..++
T Consensus 739 rl~~~~~~~~---~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li 783 (852)
T 4fdd_A 739 RLGYVCPQEV---APMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMI 783 (852)
T ss_dssp HHHHHCHHHH---GGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHh---CccHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 4433222211 0112667888888875 588888999999888877
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=64.90 E-value=33 Score=36.55 Aligned_cols=200 Identities=13% Similarity=0.119 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhHhhh-c----cc--cchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHh-cC-----CceehHHH
Q 046182 178 VWARICIQRMVDLAKETT-T----MR--RVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMET-SG-----NQQLILAS 244 (898)
Q Consensus 178 ~wA~vCLrnma~lareat-T----iR--rVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeq-Sg-----nshllLs~ 244 (898)
..|-.+|++++ .++.. . ++ .++..++..+.+...+.- .-.|..+|. .+... +. ...-++..
T Consensus 38 ~~A~~~L~~l~--~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v-~~~a~~~L~---~l~~~~~~~~~~~~~~~~i~~ 111 (450)
T 2jdq_A 38 LSATQKFRKLL--SKEPNPPIDEVISTPGVVARFVEFLKRKENCTL-QFESAWVLT---NIASGNSLQTRIVIQAGAVPI 111 (450)
T ss_dssp HHHHHHHHHHH--HSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHH-HHHHHHHHH---HHHSSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHh--cCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHH-HHHHHHHHH---HHhcCCHHHHHHHHhCCCHHH
Confidence 35666777776 32211 2 33 478888888877643333 455666666 33320 00 01237888
Q ss_pred HHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHH--HHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHH
Q 046182 245 VIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVE--IGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIED 322 (898)
Q Consensus 245 LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~av--l~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~ 322 (898)
|++.|.+ .+|.+|...+.++..++..... ....+ -+++..|++.|+. ..+..++.....
T Consensus 112 L~~lL~~----~~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~--------------~~~~~v~~~a~~ 172 (450)
T 2jdq_A 112 FIELLSS----EFEDVQEQAVWALGNIAGDSTM-CRDYVLDCNILPPLLQLFSK--------------QNRLTMTRNAVW 172 (450)
T ss_dssp HHHHTTC----SCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTTS--------------CCCHHHHHHHHH
T ss_pred HHHHHcC----CCHHHHHHHHHHHHHHccCCHH-HHHHHHHCCCHHHHHHHhcC--------------CCCHHHHHHHHH
Confidence 8888876 4788998888877777653110 00111 2455555555531 124567888889
Q ss_pred HHHHHhccC-CCC-----chhHHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCC-----CCcHHHHHHHH
Q 046182 323 CLLEIAKGI-GDT-----RPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQ-----VFPEALLVQIL 391 (898)
Q Consensus 323 cLgq~a~kv-~D~-----qpi~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~k-----aFPeall~qLL 391 (898)
||+.++..- |.. ..++..+.-+|. ... ..+ ....+..+-+++.... ..-...+..|+
T Consensus 173 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~---~~~-------~~v--~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 240 (450)
T 2jdq_A 173 ALSNLCRGKSPPPEFAKVSPCLNVLSWLLF---VSD-------TDV--LADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240 (450)
T ss_dssp HHHHHHCCSSSCCCGGGTGGGHHHHHHHTT---CCC-------HHH--HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHc---cCC-------HHH--HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHH
Confidence 999999765 332 222222222222 111 011 1111333333332210 01112455677
Q ss_pred HHccCCCchhhHHHHHHHHHhhc
Q 046182 392 KAMLHPNVETRVGAHQIFSVLLI 414 (898)
Q Consensus 392 ~amlhpD~EtRv~ah~Ifs~lL~ 414 (898)
..+-++|+++|..|-..+..+..
T Consensus 241 ~ll~~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 241 ELLMHNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCchhHHHHHHHHHHHHhh
Confidence 77889999999999999998863
No 19
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=60.82 E-value=53 Score=38.99 Aligned_cols=164 Identities=13% Similarity=0.162 Sum_probs=89.4
Q ss_pred ehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccC-c-cchhHHHHHH
Q 046182 240 LILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVG-E-QESNLNILLR 317 (898)
Q Consensus 240 llLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~-~-~~~~~n~~lQ 317 (898)
.++..|++.+.. -...+|.++ .+++.++.++...+..-.|..-.++..+++-|+.++........ + .....+..++
T Consensus 526 ~l~p~l~~~~~~-l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~ 603 (852)
T 4fdd_A 526 MLMPPLIQKWNM-LKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFM 603 (852)
T ss_dssp HHHHHHHHHHHH-SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHH
T ss_pred HHHHHHHHHHHh-cccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHH
Confidence 445555544432 112356665 78999999999877755577777788888888887653221100 0 0011245689
Q ss_pred HHHHHHHHHHhccCCCC-chhH---HHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCCCc--HHHHHHHH
Q 046182 318 NSIEDCLLEIAKGIGDT-RPLF---DMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFP--EALLVQIL 391 (898)
Q Consensus 318 ~Avi~cLgq~a~kv~D~-qpi~---dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~kaFP--eall~qLL 391 (898)
.+..++|+.+++++|.. .+.+ .+|..+++-+.+.....| ..+...+..+.+... ....| +.++..|+
T Consensus 604 ~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr--~~a~~~l~~l~~~~~-----~~~~~~l~~~lp~l~ 676 (852)
T 4fdd_A 604 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR--QSSFALLGDLTKACF-----QHVKPCIADFMPILG 676 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHH--HHHHHHHHHHHHHCG-----GGTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHH--HHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHH
Confidence 99999999999999633 3322 344444444433221112 111122222222221 11222 34555555
Q ss_pred HHccCCCchhhHHHHHHHHHh
Q 046182 392 KAMLHPNVETRVGAHQIFSVL 412 (898)
Q Consensus 392 ~amlhpD~EtRv~ah~Ifs~l 412 (898)
...-+.++++|-.|-..+..+
T Consensus 677 ~~l~~~~~~v~~~a~~alg~i 697 (852)
T 4fdd_A 677 TNLNPEFISVCNNATWAIGEI 697 (852)
T ss_dssp HTCCTTSHHHHHHHHHHHHHH
T ss_pred HHcCccchHHHHHHHHHHHHH
Confidence 555566778887776665544
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=57.52 E-value=5.8 Score=39.21 Aligned_cols=198 Identities=15% Similarity=0.138 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHHHhHhhhccc-----cchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHh-cCC-----ceehHHH
Q 046182 176 PKVWARICIQRMVDLAKETTTMR-----RVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMET-SGN-----QQLILAS 244 (898)
Q Consensus 176 P~~wA~vCLrnma~lareatTiR-----rVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeq-Sgn-----shllLs~ 244 (898)
=...|-.||++++ ++..-+.+ .++.+++..+.+.+ +.- ..-|..+|. .+... ..+ ..-.+..
T Consensus 28 ~~~~a~~~L~~~l--~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v-~~~a~~~L~---~l~~~~~~~~~~i~~~g~i~~ 100 (252)
T 4db8_A 28 EQLSATRKFSQIL--SDGNEQIQAVIDAGALPALVQLLSSPN-EQI-LQEALWALS---NIASGGNEQIQAVIDAGALPA 100 (252)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHTTHHHHHHHGGGCSC-HHH-HHHHHHHHH---HHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHH--cCCCchHHHHHHcCcHHHHHHHHcCCC-HHH-HHHHHHHHH---HHhcCCHHHHHHHHHcCCHHH
Confidence 3456777888877 33221222 36788999998776 222 444555555 33321 001 1236788
Q ss_pred HHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHH
Q 046182 245 VIHHLDHKNVSHDPQLKSYVIQVATALARQIRSG-MVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDC 323 (898)
Q Consensus 245 LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~-ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~c 323 (898)
|++.|++ .++.+|...+.++..++...... ......|++..|++-|+. .+...+.....+
T Consensus 101 L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---------------~~~~v~~~a~~~ 161 (252)
T 4db8_A 101 LVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---------------PNEQILQEALWA 161 (252)
T ss_dssp HHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC---------------SCHHHHHHHHHH
T ss_pred HHHHHcC----CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC---------------CCHHHHHHHHHH
Confidence 8999987 46888888887777775432221 112222444445444421 134677888888
Q ss_pred HHHHhccCCCCch-------hHHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCC-----CCcHHHHHHHH
Q 046182 324 LLEIAKGIGDTRP-------LFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQ-----VFPEALLVQIL 391 (898)
Q Consensus 324 Lgq~a~kv~D~qp-------i~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~k-----aFPeall~qLL 391 (898)
|+.++..-++... +..++..+ . ... .. .....+..|-++..++. ..-.-.+..|+
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~---~~~--~~-------v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 228 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLL-S---SPN--EQ-------ILQEALWALSNIASGGNEQKQAVKEAGALEKLE 228 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGG-G---CSS--HH-------HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHH-C---CCC--HH-------HHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHH
Confidence 9988865432211 11111111 1 111 00 11111333344432211 11122556688
Q ss_pred HHccCCCchhhHHHHHHHHHh
Q 046182 392 KAMLHPNVETRVGAHQIFSVL 412 (898)
Q Consensus 392 ~amlhpD~EtRv~ah~Ifs~l 412 (898)
..+-++|+++|..|..++..|
T Consensus 229 ~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 229 QLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp TTTTCSSSHHHHTHHHHHHTT
T ss_pred HHhCCCCHHHHHHHHHHHHHH
Confidence 888899999999999988765
No 21
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=57.20 E-value=37 Score=39.61 Aligned_cols=160 Identities=17% Similarity=0.130 Sum_probs=85.8
Q ss_pred hcCCceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhc-----------
Q 046182 234 TSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATV----------- 302 (898)
Q Consensus 234 qSgnshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~----------- 302 (898)
+..|-..++..|.+|+.. .++.+|..+|.-+..+|..-. ......+.++.+|++. .-.+-.
T Consensus 398 ~~~Nv~~Iv~eL~~yl~~----~d~~~~~~~v~~I~~la~k~~-~~~~~~v~~Ll~ll~~---~~~~v~~ev~~~l~~ii 469 (621)
T 2vgl_A 398 DRSNAQQIVAEMLSYLET----ADYSIREEIVLKVAILAEKYA-VDYTWYVDTILNLIRI---AGDYVSEEVWYRVIQIV 469 (621)
T ss_dssp CHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHH---HGGGSCSHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHh---hcccchHHHHHHHHHHH
Confidence 444778899999999976 478889888888777775432 1123334444444432 211100
Q ss_pred -cccCccc--------hhHHHHHHHHHH----HHHHHHhccCCCCchh--HHHHHHhhccCCCCcccccchhhHHHHHHH
Q 046182 303 -ESVGEQE--------SNLNILLRNSIE----DCLLEIAKGIGDTRPL--FDMMAMTLEKLPSSGVIARATLGSLIILAH 367 (898)
Q Consensus 303 -~~~~~~~--------~~~n~~lQ~Avi----~cLgq~a~kv~D~qpi--~dMMaImLenIp~~~~vartti~a~~~ta~ 367 (898)
....... .-.+...+.+++ -+|||++..+++...+ .+.+-.+.+++...+...| ++
T Consensus 470 ~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~---------~~ 540 (621)
T 2vgl_A 470 INRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTR---------AL 540 (621)
T ss_dssp GGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHH---------HH
T ss_pred hCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHH---------HH
Confidence 0000000 000011234555 8999999988775422 2333334355443332222 23
Q ss_pred HHHHHhhhccCCCCCcH--HHHHHHHHH-cc--CCCchhhHHHHHHHHHhh
Q 046182 368 MISVASISSRSQQVFPE--ALLVQILKA-ML--HPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 368 il~Sl~~vs~~~kaFPe--all~qLL~a-ml--hpD~EtRv~ah~Ifs~lL 413 (898)
++.++.++... +|+ ..+..+|.. .- ++|+|+|-=|...+..+-
T Consensus 541 ~Lta~~Kl~~~---~p~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 541 LLSTYIKFVNL---FPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHHHHHHHH---CGGGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---ChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 34455555322 454 344555553 33 899999999988777663
No 22
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=50.00 E-value=27 Score=40.58 Aligned_cols=209 Identities=8% Similarity=0.058 Sum_probs=102.7
Q ss_pred HHHHHHHhHhhhccccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcCCceehHHHHHhhhccCCCCCCchhHHH
Q 046182 184 IQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQQLILASVIHHLDHKNVSHDPQLKSY 263 (898)
Q Consensus 184 Lrnma~lareatTiRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSgnshllLs~LikHLDhKnv~~~P~~q~~ 263 (898)
||-|.+++. ...++.++.++.+++.+.+-..- +. |+.++- .+... +.. ++..++..|..--.-.+|.++..
T Consensus 128 L~~L~~i~~-~~~~~~l~~~l~~~L~~~~~~VR-k~-A~~al~---~l~~~--~p~-~v~~~~~~l~~lL~D~d~~V~~~ 198 (618)
T 1w63_A 128 LCTLGCMGS-SEMCRDLAGEVEKLLKTSNSYLR-KK-AALCAV---HVIRK--VPE-LMEMFLPATKNLLNEKNHGVLHT 198 (618)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHSCCHHHH-HH-HHHHHH---HHHHH--CGG-GGGGGGGGTTTSTTCCCHHHHHH
T ss_pred HHHHHhcCC-HHHHHHHHHHHHHHHcCCCHHHH-HH-HHHHHH---HHHHH--ChH-HHHHHHHHHHHHhCCCCHhHHHH
Confidence 444444432 22456678888888876542222 33 333333 22222 111 12233333332122257888988
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCC-CchhHHHHH
Q 046182 264 VIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGD-TRPLFDMMA 342 (898)
Q Consensus 264 IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D-~qpi~dMMa 342 (898)
-+.++..++..... ........+..|++.|+..+.......+.-....+.-+|..+.++|+.++..=|+ ..++.+.+.
T Consensus 199 Al~~L~~i~~~~~~-~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~ 277 (618)
T 1w63_A 199 SVVLLTEMCERSPD-MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILA 277 (618)
T ss_dssp HHHHHHHHCCSHHH-HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888777642110 0112333445566666654431110000000013455677899999999876443 234455555
Q ss_pred HhhccCCCCcccccchhhHH-HHHHHHHHHHhhhccCCCCCcH---HHHHHHHHHccCCCchhhHHHHHHHHHhh
Q 046182 343 MTLEKLPSSGVIARATLGSL-IILAHMISVASISSRSQQVFPE---ALLVQILKAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 343 ImLenIp~~~~vartti~a~-~~ta~il~Sl~~vs~~~kaFPe---all~qLL~amlhpD~EtRv~ah~Ifs~lL 413 (898)
-++.+... .|..-.++ +-. ++.+..+.. -|+ .....|.....++|+++|..|..-+..+.
T Consensus 278 ~l~~~~~~----~~~~~~aV~~ea---~~~i~~l~~----~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~ 341 (618)
T 1w63_A 278 QVATNTET----SKNVGNAILYET---VLTIMDIKS----ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTV 341 (618)
T ss_dssp HHHHTSCC----SSTHHHHHHHHH---HHHHHHSCC----CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHH
T ss_pred HHHhcccc----ccchHHHHHHHH---HHHHHhcCC----CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 55443321 12111122 222 333333321 121 23445555666799999999999888876
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=49.85 E-value=91 Score=35.85 Aligned_cols=92 Identities=9% Similarity=0.071 Sum_probs=53.7
Q ss_pred cchhhhhhhccCCCCcccCCchHHHHHHHHHHHHH-hcC-CceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhh
Q 046182 199 RVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLME-TSG-NQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIR 276 (898)
Q Consensus 199 rVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMe-qSg-nshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak 276 (898)
.++.++.+.+.+.+.+.- ..-|..+|..+..--+ ... ...-.+..|++.|.+ .++.+|...+.++..|+....
T Consensus 56 ~~i~~Lv~~L~~~~~~~~-~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~ 130 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVET-ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQE 130 (644)
T ss_dssp HHHHHHHHHHHSCCCHHH-HHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHhcCCCHHH-HHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcc
Confidence 578899999876542222 5566666663321101 000 122467888888877 368899999988888887531
Q ss_pred cccc-hHHHHHHHHHHHHHH
Q 046182 277 SGMV-LVEIGSVSDLCRHLR 295 (898)
Q Consensus 277 ~~ss-~avl~aisdLlrHLR 295 (898)
.... ...-|++.-|++.|+
T Consensus 131 ~~~~~v~~~g~i~~Lv~lL~ 150 (644)
T 2z6h_A 131 GAKMAVRLAGGLQKMVALLN 150 (644)
T ss_dssp THHHHHHHTTHHHHHHHGGG
T ss_pred hhHHHHHHCCChHHHHHHHC
Confidence 1111 112355666665554
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=45.60 E-value=24 Score=39.39 Aligned_cols=182 Identities=14% Similarity=0.072 Sum_probs=99.7
Q ss_pred cccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcCCc-------eehHHHHHhhhccCCCCCCchhHHHHHHHHH
Q 046182 197 MRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSGNQ-------QLILASVIHHLDHKNVSHDPQLKSYVIQVAT 269 (898)
Q Consensus 197 iRrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSgns-------hllLs~LikHLDhKnv~~~P~~q~~IV~V~t 269 (898)
++..+..++..+.+.+ |.- .-.|+..|+ .++....+. .-++..|++-|.+. .+|.+|...+.+++
T Consensus 85 ~~~~i~~lv~~L~s~~-~~~-~~~A~~~L~---~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~---~~~~v~~~A~~~L~ 156 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDD-MQE-QLSATVKFR---QILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALT 156 (530)
T ss_dssp --CCHHHHHHHHSCSS-HHH-HHHHHHHHH---HHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCC-HHH-HHHHHHHHH---HHhCCCCCccHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHH
Confidence 5566777777776543 332 344555555 444322122 23678888888772 26888988777777
Q ss_pred HHHHHhhcccchHH--HHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCCCchh------HHHH
Q 046182 270 ALARQIRSGMVLVE--IGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPL------FDMM 341 (898)
Q Consensus 270 ~la~~ak~~ss~av--l~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D~qpi------~dMM 341 (898)
.++..... ....+ -|++.-|++.|+. .+..+++....+|+.++..-+++... ...+
T Consensus 157 ~l~~~~~~-~~~~~~~~g~i~~Lv~lL~~---------------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L 220 (530)
T 1wa5_B 157 NIASGTSA-QTKVVVDADAVPLFIQLLYT---------------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 220 (530)
T ss_dssp HHTTSCHH-HHHHHHHTTCHHHHHHHHHH---------------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred HHhCCCHH-HHHHHHHCCCHHHHHHHHcC---------------CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHH
Confidence 76652110 01111 2455555555542 13567888888999988654332221 1111
Q ss_pred HHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCC-CCC----cHHHHHHHHHHccCCCchhhHHHHHHHHHhhc
Q 046182 342 AMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQ-QVF----PEALLVQILKAMLHPNVETRVGAHQIFSVLLI 414 (898)
Q Consensus 342 aImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~-kaF----Peall~qLL~amlhpD~EtRv~ah~Ifs~lL~ 414 (898)
.-+|.. +. .. .....+..|-+++.+. ... -..++..|+..+-++|+++|..|-..+..|..
T Consensus 221 ~~ll~~-~~---------~~--v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 221 LGLFNS-NK---------PS--LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHGGGS-CC---------HH--HHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHhcc-CC---------HH--HHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 111122 10 01 1122244455555432 111 13456678888889999999999999998874
No 25
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=45.48 E-value=34 Score=38.45 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=83.9
Q ss_pred hHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHH
Q 046182 241 ILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGM-VLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNS 319 (898)
Q Consensus 241 lLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~s-s~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~A 319 (898)
+|..||+-|.+ ..+|.+|..-..+++.||....... ...-.|++.-|++.|+. .+..+|+.
T Consensus 101 ~ip~LV~lL~~---~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s---------------~~~~v~e~ 162 (510)
T 3ul1_B 101 LIPKFVSFLGK---TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS---------------PHAHISEQ 162 (510)
T ss_dssp HHHHHHHHTTC---TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC---------------SCHHHHHH
T ss_pred CHHHHHHHHCC---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC---------------CCHHHHHH
Confidence 57788888875 2468888876666666653111111 12334678888887742 13457777
Q ss_pred HHHHHHHHhccCCCCchhH-------HHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCCCc-----HHHH
Q 046182 320 IEDCLLEIAKGIGDTRPLF-------DMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFP-----EALL 387 (898)
Q Consensus 320 vi~cLgq~a~kv~D~qpi~-------dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~kaFP-----eall 387 (898)
...||+.+|..-+..+... -++..+ .. +..... ....+......+.++..+....+ ..++
T Consensus 163 A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL-~~-~~~~~~------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 234 (510)
T 3ul1_B 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALL-AV-PDLSTL------ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 234 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT-CS-SCGGGS------CHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHcCChHHHHHHH-Hh-ccchhh------hHHHHHHHHHHHHHHhhcccchhHHHHHHhHH
Confidence 7888888886544433221 222222 21 111110 11122233455556655433333 2345
Q ss_pred HHHHHHccCCCchhhHHHHHHHHHhhc
Q 046182 388 VQILKAMLHPNVETRVGAHQIFSVLLI 414 (898)
Q Consensus 388 ~qLL~amlhpD~EtRv~ah~Ifs~lL~ 414 (898)
..|....-++|+++|..|-..+..|..
T Consensus 235 p~L~~LL~~~~~~v~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 235 PTLVRLLHHNDPEVLADSCWAISYLTD 261 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 556677789999999999999998864
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=42.76 E-value=32 Score=38.19 Aligned_cols=206 Identities=11% Similarity=0.100 Sum_probs=113.2
Q ss_pred CChHH--HHHHHHHHHHHHhHhhh-cc-----ccchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHh-cCCc-----e
Q 046182 174 ETPKV--WARICIQRMVDLAKETT-TM-----RRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMET-SGNQ-----Q 239 (898)
Q Consensus 174 enP~~--wA~vCLrnma~lareat-Ti-----RrVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeq-Sgns-----h 239 (898)
+||.. .|-.+|++++ .++.. ++ ..++.+++..+.+.+.|.- ..-|+.+|. .|... +.+. +
T Consensus 86 ~~~~~~~~A~~~L~~l~--s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v-~~~A~~~L~---~l~~~~~~~~~~~~~~ 159 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLL--SIERSPPIEEVIQSGVVPRFVQFLTREDFPQL-QFEAAWALT---NIASGTSENTKVVIDH 159 (528)
T ss_dssp SCHHHHHHHHHHHHHHH--TCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHH-HHHHHHHHH---HHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHh--cCCCCchHHHHHHCCCHHHHHHHhCCCCCHHH-HHHHHHHHH---HHhCCCHHHHHHHHhC
Confidence 34543 3445667776 33331 22 2478889999987765544 455666666 33331 1111 2
Q ss_pred ehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHH--HHHHHHHHHHHHhHhhhccccCccchhHHHHHH
Q 046182 240 LILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEI--GSVSDLCRHLRKSFQATVESVGEQESNLNILLR 317 (898)
Q Consensus 240 llLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl--~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ 317 (898)
-.+..|++.|.+ .++.+|...+.++..|+..... ....++ |++.-|++.|+.+ .+...+
T Consensus 160 g~i~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~~-~~~~i~~~g~l~~Ll~lL~~~--------------~~~~v~ 220 (528)
T 4b8j_A 160 GAVPIFVKLLGS----SSDDVREQAVWALGNVAGDSPK-CRDLVLANGALLPLLAQLNEH--------------TKLSML 220 (528)
T ss_dssp THHHHHHHHTTC----SCHHHHHHHHHHHHHHHHTCHH-HHHHHHHTTCHHHHHHTCCTT--------------CCHHHH
T ss_pred CcHHHHHHHhcC----CCHHHHHHHHHHHHHHhCCChh-hHHHHHHCCcHHHHHHHHhcC--------------CCHHHH
Confidence 367888888877 4788888888887777642110 001222 3555666555321 135677
Q ss_pred HHHHHHHHHHhccCCCCchhHH--HHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCC-----CcHHHHHHH
Q 046182 318 NSIEDCLLEIAKGIGDTRPLFD--MMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQV-----FPEALLVQI 390 (898)
Q Consensus 318 ~Avi~cLgq~a~kv~D~qpi~d--MMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~ka-----FPeall~qL 390 (898)
.....+|..++..-|....... .+-.++.-+-... .......+..|-+++.+... +-...+..|
T Consensus 221 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~---------~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~L 291 (528)
T 4b8j_A 221 RNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSND---------EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 291 (528)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCC---------HHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHH
Confidence 7888899999987654432210 1111111111110 01122224444455433111 111245567
Q ss_pred HHHccCCCchhhHHHHHHHHHhh
Q 046182 391 LKAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 391 L~amlhpD~EtRv~ah~Ifs~lL 413 (898)
+..+-++++++|..|.+++..+.
T Consensus 292 v~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 292 VELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCChhHHHHHHHHHHHHH
Confidence 88888999999999999999886
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=41.15 E-value=48 Score=32.05 Aligned_cols=146 Identities=12% Similarity=0.120 Sum_probs=79.6
Q ss_pred ehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHH
Q 046182 240 LILASVIHHLDHKNVSHDPQLKSYVIQVATALARQ-IRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRN 318 (898)
Q Consensus 240 llLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~-ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~ 318 (898)
-++..|++-|.+ .++.+|...+.++..++.. ........-.+++..|++.|+. .+...+.
T Consensus 44 g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~---------------~~~~v~~ 104 (252)
T 4hxt_A 44 GGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS---------------TDSEVQK 104 (252)
T ss_dssp THHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---------------SSHHHHH
T ss_pred CCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC---------------CCHHHHH
Confidence 357778888877 3578888877777666543 1111112222556666655541 1356778
Q ss_pred HHHHHHHHHhccCCCCchhHH---HHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCC-----CCcHHHHHHH
Q 046182 319 SIEDCLLEIAKGIGDTRPLFD---MMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQ-----VFPEALLVQI 390 (898)
Q Consensus 319 Avi~cLgq~a~kv~D~qpi~d---MMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~k-----aFPeall~qL 390 (898)
....+|+.++..-++...... .+-.+++-+.... .......+..+-+++.... ..-.-.+..|
T Consensus 105 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 175 (252)
T 4hxt_A 105 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD---------SEVQKEAARALANIASGPDEAIKAIVDAGGVEVL 175 (252)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHH
Confidence 888888888875444332111 0111111111111 0111222444445443210 1112255667
Q ss_pred HHHccCCCchhhHHHHHHHHHhh
Q 046182 391 LKAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 391 L~amlhpD~EtRv~ah~Ifs~lL 413 (898)
+..+-++|+++|..|...+..+.
T Consensus 176 ~~ll~~~~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 176 VKLLTSTDSEVQKEAARALANIA 198 (252)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCHHHHHHHHHHHHHHH
Confidence 78888999999999999999887
No 28
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=39.57 E-value=1.1e+02 Score=32.30 Aligned_cols=153 Identities=13% Similarity=0.102 Sum_probs=83.1
Q ss_pred ehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhh------c----------ccc-----hHHHHHHHHHHHHHHHhH
Q 046182 240 LILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIR------S----------GMV-----LVEIGSVSDLCRHLRKSF 298 (898)
Q Consensus 240 llLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak------~----------~ss-----~avl~aisdLlrHLRkSi 298 (898)
-++..++.-+.+ .++.+|...++.+..++.... . ... +.+-.++..|+++|+..
T Consensus 259 ~l~~~~~~~~~~----~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~- 333 (462)
T 1ibr_B 259 ALFAITIEAMKS----DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ- 333 (462)
T ss_dssp THHHHHHHHHHC----SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc-
Confidence 456666555544 467899999999888887631 0 011 12223334444444321
Q ss_pred hhhccccCccchhHHHHHHHHHHHHHHHHhccCCCCchhHH-HHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhcc
Q 046182 299 QATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFD-MMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSR 377 (898)
Q Consensus 299 ~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D~qpi~d-MMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~ 377 (898)
-+ +. .+++...+.+...||+.++..+|+ .++. ++-.+.+.+.... .+.-.++.+.+..| ..-..
T Consensus 334 ---d~--d~--~~~~~~~r~~a~~~L~~l~~~~~~--~~~~~~~~~l~~~l~~~~--~~~r~aal~~l~~l----~~~~~ 398 (462)
T 1ibr_B 334 ---DE--ND--DDDDWNPCKAAGVCLMLLATCCED--DIVPHVLPFIKEHIKNPD--WRYRDAAVMAFGCI----LEGPE 398 (462)
T ss_dssp ---CS--SC--CTTCCSHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHHTTCSS--HHHHHHHHHHHHHT----SSSSC
T ss_pred ---cc--cc--ccccchHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHH----hcCCc
Confidence 00 01 112236788999999999999995 3332 3333324443222 11112222222222 22110
Q ss_pred --C-CCCCcHHHHHHHHHHccCCCchhhHHHHHHHHHhh
Q 046182 378 --S-QQVFPEALLVQILKAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 378 --~-~kaFPeall~qLL~amlhpD~EtRv~ah~Ifs~lL 413 (898)
. .... +.++..|+..+-.+++.+|-.|-..+..+.
T Consensus 399 ~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 399 PSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp TTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0 1122 457777888888999999999988888775
No 29
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=38.98 E-value=51 Score=37.07 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=83.0
Q ss_pred hHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHH
Q 046182 241 ILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMV-LVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNS 319 (898)
Q Consensus 241 lLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss-~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~A 319 (898)
+|..||+.|.. ..+|.+|...+.+++.||........ ....|+|.-|++.|+. .+...++.
T Consensus 120 ~ip~Lv~lL~~---~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s---------------~~~~v~e~ 181 (529)
T 3tpo_A 120 LIPKFVSFLGK---TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS---------------PHAHISEQ 181 (529)
T ss_dssp HHHHHHHHHTC---TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC---------------SCHHHHHH
T ss_pred CHHHHHHHHcC---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC---------------CCHHHHHH
Confidence 67778888865 24688888877777777643221111 3334677777765532 13456677
Q ss_pred HHHHHHHHhccCCCCchh-------HHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCCCc-----HHHH
Q 046182 320 IEDCLLEIAKGIGDTRPL-------FDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFP-----EALL 387 (898)
Q Consensus 320 vi~cLgq~a~kv~D~qpi-------~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~kaFP-----eall 387 (898)
...+|+.+|..-++++.. .-++..+ .. +..... ....+..+...+.++..+....+ ...+
T Consensus 182 A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL-~~-~~~~~~------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 253 (529)
T 3tpo_A 182 AVWALGNIAGAGSAFRDLVIKHGAIDPLLALL-AV-PDLSTL------ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 253 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTT-CS-SCGGGS------CHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHcCCcHHHHHHH-hc-cchhHh------HHHHHHHHHHHHHHHHhcccchhhHHHHhhHH
Confidence 777888887654433322 1122222 21 111100 11122333455556555433333 2344
Q ss_pred HHHHHHccCCCchhhHHHHHHHHHhhc
Q 046182 388 VQILKAMLHPNVETRVGAHQIFSVLLI 414 (898)
Q Consensus 388 ~qLL~amlhpD~EtRv~ah~Ifs~lL~ 414 (898)
..|....-++|+++|..|-..++.+.+
T Consensus 254 p~L~~LL~~~~~~v~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 254 PTLVRLLHHNDPEVLADSCWAISYLTD 280 (529)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 556667789999999999998888774
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=37.68 E-value=24 Score=39.15 Aligned_cols=204 Identities=12% Similarity=0.079 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHhHhhh-ccc--cchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhc-CC-----ceehHHHHHhh
Q 046182 178 VWARICIQRMVDLAKETT-TMR--RVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETS-GN-----QQLILASVIHH 248 (898)
Q Consensus 178 ~wA~vCLrnma~lareat-TiR--rVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqS-gn-----shllLs~LikH 248 (898)
..|-.||.+++.-..+.. .+. .++.+++..+.+.+ +.- ..-|+.+|.. |...+ .+ .+-++..|++.
T Consensus 136 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v-~~~a~~aL~~---l~~~~~~~~~~i~~~g~l~~Ll~l 210 (528)
T 4b8j_A 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSS-DDV-REQAVWALGN---VAGDSPKCRDLVLANGALLPLLAQ 210 (528)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHH-HHHHHHHHHH---HHHTCHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCC-HHH-HHHHHHHHHH---HhCCChhhHHHHHHCCcHHHHHHH
Confidence 456667788773112222 222 48889999998743 222 4455666653 33211 01 12357788888
Q ss_pred h-ccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHH
Q 046182 249 L-DHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEI 327 (898)
Q Consensus 249 L-DhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~ 327 (898)
| ++ .++.++...+.++..|+..........+-+++..|++.|+ . .+...+.....+|+.+
T Consensus 211 L~~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~--------~-------~~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 211 LNEH----TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH--------S-------NDEEVLTDACWALSYL 271 (528)
T ss_dssp CCTT----CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT--------C-------CCHHHHHHHHHHHHHH
T ss_pred HhcC----CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC--------C-------CCHHHHHHHHHHHHHH
Confidence 8 44 4788999988888888764322222333444444444432 1 1245667777888888
Q ss_pred hccCCCC-chhHH--HHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCC-----CCcHHHHHHHHHHccCC-C
Q 046182 328 AKGIGDT-RPLFD--MMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQ-----VFPEALLVQILKAMLHP-N 398 (898)
Q Consensus 328 a~kv~D~-qpi~d--MMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~k-----aFPeall~qLL~amlhp-D 398 (898)
+..-++. +.+.+ .+-.+++-+.... .. .....+..|-+++++.. .+-.-.+..|+..+-++ +
T Consensus 272 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-------~~--v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 342 (528)
T 4b8j_A 272 SDGTNDKIQAVIEAGVCPRLVELLLHPS-------PS--VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLK 342 (528)
T ss_dssp TSSCHHHHHHHHHTTCHHHHHHHTTCSC-------HH--HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCC
T ss_pred HcCCHHHHHHHHHcCHHHHHHHHHcCCC-------hh--HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCc
Confidence 7543221 11100 0011111111111 01 11112444444444311 11122455566666788 8
Q ss_pred chhhHHHHHHHHHhhc
Q 046182 399 VETRVGAHQIFSVLLI 414 (898)
Q Consensus 399 ~EtRv~ah~Ifs~lL~ 414 (898)
+.+|..|-.++..|..
T Consensus 343 ~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 343 KSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHC
Confidence 9999999999998863
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=37.11 E-value=27 Score=38.97 Aligned_cols=183 Identities=11% Similarity=0.058 Sum_probs=96.1
Q ss_pred cchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHh-cCCc-----eehHHHHHhhhccCCCCCCchhHHHHHHHHHHHH
Q 046182 199 RVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMET-SGNQ-----QLILASVIHHLDHKNVSHDPQLKSYVIQVATALA 272 (898)
Q Consensus 199 rVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeq-Sgns-----hllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la 272 (898)
.++.+++.++.+...|.- .--|..+|. .|... +.+. .-++..|++-|.+ .++.+|...+.++..|+
T Consensus 130 g~i~~Lv~~L~~~~~~~v-~~~A~~~L~---~l~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~~~vr~~A~~aL~~l~ 201 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEML-QLEAAWALT---NIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVKEQAIWALGNVA 201 (530)
T ss_dssp TCHHHHHHTTSTTSCHHH-HHHHHHHHH---HHTTSCHHHHHHHHHTTCHHHHHHHHHH----CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCHHH-HHHHHHHHH---HHhCCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHh
Confidence 478889999987654544 445566665 33321 0011 2357788888876 47889988888877776
Q ss_pred HHhhc-ccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccC-CCCchhH--HHHHHhhccC
Q 046182 273 RQIRS-GMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGI-GDTRPLF--DMMAMTLEKL 348 (898)
Q Consensus 273 ~~ak~-~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv-~D~qpi~--dMMaImLenI 348 (898)
..... ......-+++..|++.|+. .+..++.....||+.|+..- |...... ..+-.++.-+
T Consensus 202 ~~~~~~~~~~~~~~~l~~L~~ll~~---------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL 266 (530)
T 1wa5_B 202 GDSTDYRDYVLQCNAMEPILGLFNS---------------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266 (530)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHGGGS---------------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT
T ss_pred CCCccchHHHHHcCcHHHHHHHhcc---------------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH
Confidence 42100 0001111344444444432 13456777888999999765 3332111 0111111111
Q ss_pred CCCcccccchhhHHHHHHHHHHHHhhhccCCC-----CCcHHHHHHHHHHccCCCchhhHHHHHHHHHhh
Q 046182 349 PSSGVIARATLGSLIILAHMISVASISSRSQQ-----VFPEALLVQILKAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 349 p~~~~vartti~a~~~ta~il~Sl~~vs~~~k-----aFPeall~qLL~amlhpD~EtRv~ah~Ifs~lL 413 (898)
.... .. .....+..|-+++.+.. .+-..++..|+..+-++|+++|..|-.++..+.
T Consensus 267 ~~~d-------~~--v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 267 YSMD-------TE--TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp TCCC-------HH--HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred cCCC-------HH--HHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 1111 01 11112333333332210 011134556777778999999999999998875
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=34.50 E-value=1.6e+02 Score=31.23 Aligned_cols=149 Identities=14% Similarity=0.025 Sum_probs=80.9
Q ss_pred ehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHH
Q 046182 240 LILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMV-LVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRN 318 (898)
Q Consensus 240 llLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss-~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~ 318 (898)
-++..|++-|.+. .+|.+|...+.+++.++........ ..--|++.-|++.|+. .+..+|+
T Consensus 64 ~~i~~L~~~L~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---------------~~~~vr~ 125 (450)
T 2jdq_A 64 GVVARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS---------------EFEDVQE 125 (450)
T ss_dssp THHHHHHHHHTCT---TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC---------------SCHHHHH
T ss_pred CcHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC---------------CCHHHHH
Confidence 4778888888772 2688998888888877752110000 1112344445444431 1356788
Q ss_pred HHHHHHHHHhccCCCCchhHH---HHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCC-----CCCcHHHHHHH
Q 046182 319 SIEDCLLEIAKGIGDTRPLFD---MMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQ-----QVFPEALLVQI 390 (898)
Q Consensus 319 Avi~cLgq~a~kv~D~qpi~d---MMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~-----kaFPeall~qL 390 (898)
....+|+.++..-++...... .+-.++.-+.... -..+ ....+..+-+++... ..+-..++..|
T Consensus 126 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~------~~~v--~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 197 (450)
T 2jdq_A 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN------RLTM--TRNAVWALSNLCRGKSPPPEFAKVSPCLNVL 197 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC------CHHH--HHHHHHHHHHHHCCSSSCCCGGGTGGGHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC------CHHH--HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 888999999886543322110 0111111111100 0011 111233444444321 11114567778
Q ss_pred HHHccCCCchhhHHHHHHHHHhhc
Q 046182 391 LKAMLHPNVETRVGAHQIFSVLLI 414 (898)
Q Consensus 391 L~amlhpD~EtRv~ah~Ifs~lL~ 414 (898)
+..+-++|+++|..+-..+..|..
T Consensus 198 ~~~l~~~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 198 SWLLFVSDTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHccCCHHHHHHHHHHHHHHHC
Confidence 888889999999999999998863
No 33
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=33.76 E-value=3e+02 Score=29.80 Aligned_cols=182 Identities=14% Similarity=0.064 Sum_probs=96.4
Q ss_pred cchhhhhhhccCCCCcccCCchHHHHHHHHHHHHHhcC-C-----ceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHH
Q 046182 199 RVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMETSG-N-----QQLILASVIHHLDHKNVSHDPQLKSYVIQVATALA 272 (898)
Q Consensus 199 rVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMeqSg-n-----shllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la 272 (898)
.++.++...+.+.+ ..- ...|+.+|. .+..... + ..-.+..|++-|.+ .++.++.....++..++
T Consensus 101 g~i~~L~~lL~~~~-~~v-~~~a~~~L~---~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 101 GGIPALVKMLGSPV-DSV-LFYAITTLH---NLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILA 171 (529)
T ss_dssp THHHHHHHHTTCSC-HHH-HHHHHHHHH---HHHHHCTTHHHHHHHHTHHHHHHHGGGC----CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCC-HHH-HHHHHHHHH---HHhcCCcchHHHHHHcCCHHHHHHHHhc----CCHHHHHHHHHHHHHHH
Confidence 47888999988754 111 345666666 4444322 1 23467888888887 35777777666666555
Q ss_pred HH-hhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCCCchhHH---HHHHhhccC
Q 046182 273 RQ-IRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFD---MMAMTLEKL 348 (898)
Q Consensus 273 ~~-ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D~qpi~d---MMaImLenI 348 (898)
.. ........-.|++..|++.|+..- ....+.+...+|..++.. ++....+. .+-.+++-+
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~--------------~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll 236 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYT--------------YEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL 236 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCC--------------hHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH
Confidence 31 000001112256667777666430 133456666777777742 33222110 111111222
Q ss_pred CCCcccccchhhHHHHHHHHHHHHhhhccCCC--CCcHHHHHHHHHHccCCCchhhHHHHHHHHHhh
Q 046182 349 PSSGVIARATLGSLIILAHMISVASISSRSQQ--VFPEALLVQILKAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 349 p~~~~vartti~a~~~ta~il~Sl~~vs~~~k--aFPeall~qLL~amlhpD~EtRv~ah~Ifs~lL 413 (898)
.... ..+ ....+..+-+++.... ..-...+..|+...-++|+++|..|-.++..|-
T Consensus 237 ~~~~-------~~~--~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 237 TDPS-------QRL--VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp TSSC-------HHH--HHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hCCC-------hHH--HHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1111 011 1122333444443211 112456777888888899999999999999884
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=33.02 E-value=74 Score=34.71 Aligned_cols=184 Identities=11% Similarity=0.082 Sum_probs=102.4
Q ss_pred cchhhhhhhccCCCCcccCCchHHHHHHHHHHHHH-hcC-CceehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhh
Q 046182 199 RVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLME-TSG-NQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIR 276 (898)
Q Consensus 199 rVLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMe-qSg-nshllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak 276 (898)
.++.++.+.+.++..|.- ...|..+|..+..--+ ... ...-.+..|++.|.+ .+|.+|...+.++..++....
T Consensus 59 ~~i~~Lv~~L~~~~~~~~-~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~ 133 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVET-ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQE 133 (529)
T ss_dssp HHHHHHHHHHHHCCCHHH-HHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHhcCCCHHH-HHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCc
Confidence 578999999977666665 5667777775421100 000 112467788888877 468899999988888887522
Q ss_pred cc-cchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCC-------CCchhHHHHHHhhccC
Q 046182 277 SG-MVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIG-------DTRPLFDMMAMTLEKL 348 (898)
Q Consensus 277 ~~-ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~-------D~qpi~dMMaImLenI 348 (898)
.. ......|++..|++.|+.. +..++.....||..++..-+ +.|-+..++.++ ..-
T Consensus 134 ~~~~~i~~~g~i~~L~~ll~~~---------------~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll-~~~ 197 (529)
T 1jdh_A 134 GAKMAVRLAGGLQKMVALLNKT---------------NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM-RTY 197 (529)
T ss_dssp THHHHHHHHTHHHHHHHGGGCC---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HHC
T ss_pred chHHHHHHcCCHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH-HhC
Confidence 11 1122346666666655420 23456667777777776322 122233333333 210
Q ss_pred CCCcccccchhhHHHHHHHHHHHHhhhccCCC----CCcHHHHHHHHHHccCCCchhhHHHHHHHHHhhc
Q 046182 349 PSSGVIARATLGSLIILAHMISVASISSRSQQ----VFPEALLVQILKAMLHPNVETRVGAHQIFSVLLI 414 (898)
Q Consensus 349 p~~~~vartti~a~~~ta~il~Sl~~vs~~~k----aFPeall~qLL~amlhpD~EtRv~ah~Ifs~lL~ 414 (898)
.. ..+.......+.+++.... ..-...+..|+..+-++++++|..+-.++..|-.
T Consensus 198 -~~----------~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 198 -TY----------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp -CC----------HHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred -Ch----------HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence 00 0111112233333332211 1112345667777778899999999998888763
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=29.21 E-value=69 Score=35.98 Aligned_cols=212 Identities=12% Similarity=0.104 Sum_probs=106.3
Q ss_pred cCChHH--HHHHHHHHHHHHhHhhh-cccc-----chhhhhhhccCCCCcccCCchHHHHHHHHHHHHH-hcCCc-----
Q 046182 173 VETPKV--WARICIQRMVDLAKETT-TMRR-----VLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLME-TSGNQ----- 238 (898)
Q Consensus 173 ~enP~~--wA~vCLrnma~lareat-TiRr-----VLeplf~yfD~h~lWsp~~gfA~~vl~~mq~iMe-qSgns----- 238 (898)
++||.. -|-.++|.|. +++.. ++.. ++.++..++..++...- .--|..+|.++ .. .+.+.
T Consensus 87 s~d~~~q~~a~~~~rklL--s~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~-q~~Aa~aL~ni---a~~~~~~~~~vv~ 160 (529)
T 3tpo_A 87 SNNLESQLQATQAARKLL--SREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI-QFESAWALTNI---ASGTSEQTKAVVD 160 (529)
T ss_dssp SSCHHHHHHHHHHHHHHH--TSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHH-HHHHHHHHHHH---HTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH--cCCCCchHHHHHHCCCHHHHHHHHcCCCCHHH-HHHHHHHHHHH---HcCCHHHHHHHHH
Confidence 345654 4556778887 67665 4443 56678888876653322 33466666633 22 11111
Q ss_pred eehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhh-cccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHH
Q 046182 239 QLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIR-SGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLR 317 (898)
Q Consensus 239 hllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak-~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ 317 (898)
+-.+..|++.|.+ .++.+|...+.++..|+.... ......--|++.-|++.|+..-. ......+.
T Consensus 161 ~Gaip~Lv~LL~s----~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~----------~~~~~~~~ 226 (529)
T 3tpo_A 161 GGAIPAFISLLAS----PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDL----------STLACGYL 226 (529)
T ss_dssp TTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCG----------GGSCHHHH
T ss_pred CCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccch----------hHhHHHHH
Confidence 1257788888887 467888777766666653210 00112223455555554432110 01123344
Q ss_pred HHHHHHHHHHhccCCCCchhHHHH---HHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCC-----CCcHHHHHH
Q 046182 318 NSIEDCLLEIAKGIGDTRPLFDMM---AMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQ-----VFPEALLVQ 389 (898)
Q Consensus 318 ~Avi~cLgq~a~kv~D~qpi~dMM---aImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~k-----aFPeall~q 389 (898)
..+..+|..++..-....++...- -+++.-+-.... . .....+..|-+++.+.. +.-.-.+..
T Consensus 227 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~--~-------v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~ 297 (529)
T 3tpo_A 227 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--E-------VLADSCWAISYLTDGPNERIEMVVKKGVVPQ 297 (529)
T ss_dssp HHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH--H-------HHHHHHHHHHHHHSSCHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcH--H-------HHHHHHHHHHHhhhhhhhhHHHHHhccchHH
Confidence 455667777776654444433222 111111111110 0 01111222223222100 111223445
Q ss_pred HHHHccCCCchhhHHHHHHHHHhh
Q 046182 390 ILKAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 390 LL~amlhpD~EtRv~ah~Ifs~lL 413 (898)
|...+-+++.+++..+.+.+..+.
T Consensus 298 Lv~lL~~~~~~v~~~a~~aL~nl~ 321 (529)
T 3tpo_A 298 LVKLLGATELPIVTPALRAIGNIV 321 (529)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCChhHHHHHHHHHHHHH
Confidence 666677999999999999998885
No 36
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.23 E-value=2.7e+02 Score=27.72 Aligned_cols=132 Identities=13% Similarity=0.056 Sum_probs=70.7
Q ss_pred hHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHH
Q 046182 241 ILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSI 320 (898)
Q Consensus 241 lLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Av 320 (898)
-+..|++.|++ .+|.+|...+..+..+. .+ +++..|++.|+ + .+...+.+.
T Consensus 24 ~i~~L~~~L~~----~~~~vr~~A~~~L~~~~-------~~---~~~~~L~~~l~--------d-------~~~~vR~~A 74 (280)
T 1oyz_A 24 NDDELFRLLDD----HNSLKRISSARVLQLRG-------GQ---DAVRLAIEFCS--------D-------KNYIRRDIG 74 (280)
T ss_dssp CHHHHHHHTTC----SSHHHHHHHHHHHHHHC-------CH---HHHHHHHHHHT--------C-------SSHHHHHHH
T ss_pred hHHHHHHHHHc----CCHHHHHHHHHHHHccC-------Cc---hHHHHHHHHHc--------C-------CCHHHHHHH
Confidence 47888899987 47888887776665543 22 23333443331 1 134577788
Q ss_pred HHHHHHHhccCCCCchhHHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHccCCCch
Q 046182 321 EDCLLEIAKGIGDTRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVE 400 (898)
Q Consensus 321 i~cLgq~a~kv~D~qpi~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~kaFPeall~qLL~amlhpD~E 400 (898)
..+|++++..-....++...+.-++.+=+... .| ..+...+.++ ..+...+.+.++..|+...-++|++
T Consensus 75 ~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~--vr--~~a~~aL~~l-------~~~~~~~~~~~~~~L~~~l~d~~~~ 143 (280)
T 1oyz_A 75 AFILGQIKICKKCEDNVFNILNNMALNDKSAC--VR--ATAIESTAQR-------CKKNPIYSPKIVEQSQITAFDKSTN 143 (280)
T ss_dssp HHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHH--HH--HHHHHHHHHH-------HHHCGGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHhccccccchHHHHHHHHHHhcCCCHH--HH--HHHHHHHHHH-------hccCCcccHHHHHHHHHHhhCCCHH
Confidence 89999887532222222222221111111111 11 0111122222 1111123345677788888899999
Q ss_pred hhHHHHHHHHHh
Q 046182 401 TRVGAHQIFSVL 412 (898)
Q Consensus 401 tRv~ah~Ifs~l 412 (898)
+|..|-..+..+
T Consensus 144 vR~~a~~aL~~~ 155 (280)
T 1oyz_A 144 VRRATAFAISVI 155 (280)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999998887754
No 37
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=27.39 E-value=2.3e+02 Score=31.61 Aligned_cols=212 Identities=12% Similarity=0.121 Sum_probs=106.5
Q ss_pred cCChHH--HHHHHHHHHHHHhHhhh-ccccc-----hhhhhhhccCCCCcccCCchHHHHHHHHHHHHH-hcCCc-----
Q 046182 173 VETPKV--WARICIQRMVDLAKETT-TMRRV-----LDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLME-TSGNQ----- 238 (898)
Q Consensus 173 ~enP~~--wA~vCLrnma~lareat-TiRrV-----Leplf~yfD~h~lWsp~~gfA~~vl~~mq~iMe-qSgns----- 238 (898)
++||.. .|-..+|.|. ++|.. .|..| +.++..+++..+.-.- .--|..+|.++. . .+.+.
T Consensus 68 s~d~~~q~~a~~~~rkll--s~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~l-q~~Aa~aL~nia---s~~~e~~~~vv~ 141 (510)
T 3ul1_B 68 SNNLESQLQATQAARKLL--SREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI-QFESAWALTNIA---SGTSEQTKAVVD 141 (510)
T ss_dssp SSCHHHHHHHHHHHHHHH--TCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHH-HHHHHHHHHHHH---TSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh--cCCCCchHHHHHHCCCHHHHHHHHCCCCCHHH-HHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 345553 4566678887 78766 55554 5678888876542221 334667777442 1 11111
Q ss_pred eehHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHH
Q 046182 239 QLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRS-GMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLR 317 (898)
Q Consensus 239 hllLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~-~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ 317 (898)
+-.+..|+++|.+ .++.+|..-+.++..|+..... .....--|++.-|++.|+..- . ......++
T Consensus 142 ~GaIp~Lv~lL~s----~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~--------~--~~~~~~~~ 207 (510)
T 3ul1_B 142 GGAIPAFISLLAS----PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD--------L--STLACGYL 207 (510)
T ss_dssp TTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSC--------G--GGSCHHHH
T ss_pred CCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhcc--------c--hhhhHHHH
Confidence 1257789999977 4678888777666666532110 011222345555555554210 0 01122344
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHH---hhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCC-----CCcHHHHHH
Q 046182 318 NSIEDCLLEIAKGIGDTRPLFDMMAM---TLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQ-----VFPEALLVQ 389 (898)
Q Consensus 318 ~Avi~cLgq~a~kv~D~qpi~dMMaI---mLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~k-----aFPeall~q 389 (898)
..+..++..++..-....++...-.+ ++.-+-.... . .....+..|-+++.+.. +.-.-.+..
T Consensus 208 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~--~-------v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~ 278 (510)
T 3ul1_B 208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--E-------VLADSCWAISYLTDGPNERIEMVVKKGVVPQ 278 (510)
T ss_dssp HHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH--H-------HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCH--H-------HHHHHHHHHHHHhhchhhhHHHHHhcccchh
Confidence 45566777777755444443322111 1111111110 0 11111222333332210 011123445
Q ss_pred HHHHccCCCchhhHHHHHHHHHhh
Q 046182 390 ILKAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 390 LL~amlhpD~EtRv~ah~Ifs~lL 413 (898)
|...+-+++.++|..+.+.+..+.
T Consensus 279 Lv~lL~~~~~~v~~~al~aL~nl~ 302 (510)
T 3ul1_B 279 LVKLLGATELPIVTPALRAIGNIV 302 (510)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred hhhhhcCCChhhhhHHHHHHHHhh
Confidence 666677899999999999998875
No 38
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=24.04 E-value=63 Score=34.35 Aligned_cols=114 Identities=11% Similarity=0.149 Sum_probs=65.7
Q ss_pred ccchhhhhhhcc------CCCCcccCCchHHHHHHHHHHHHHhcCCc--eehHHHHHhhhccCCCCCCchhHHHHHHHHH
Q 046182 198 RRVLDPMFTYFD------SRRQWIPRQGLAMIVLSDMAYLMETSGNQ--QLILASVIHHLDHKNVSHDPQLKSYVIQVAT 269 (898)
Q Consensus 198 RrVLeplf~yfD------~h~lWsp~~gfA~~vl~~mq~iMeqSgns--hllLs~LikHLDhKnv~~~P~~q~~IV~V~t 269 (898)
..++..++.++. ...-|.+ ..-|..+|. .+...-|.. ..++..+...|.+ .++.+|...+..+.
T Consensus 320 ~~l~p~l~~~l~~~d~d~~~~~~~~-r~~a~~~L~---~l~~~~~~~~~~~~~~~l~~~l~~----~~~~~r~aal~~l~ 391 (462)
T 1ibr_B 320 QYLVPILTQTLTKQDENDDDDDWNP-CKAAGVCLM---LLATCCEDDIVPHVLPFIKEHIKN----PDWRYRDAAVMAFG 391 (462)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCSH-HHHHHHHHH---HHHHHTTTTHHHHHHHHHHHHTTC----SSHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHhcccccccccchH-HHHHHHHHH---HHHHhccHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHH
Confidence 445555666662 2456777 556677777 555433321 1344444445544 46888998888887
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHHHHHHHHHHhccCCC
Q 046182 270 ALARQIRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGD 333 (898)
Q Consensus 270 ~la~~ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~Avi~cLgq~a~kv~D 333 (898)
.++........ -..+..++.+|.+.+. +.+...+.+...||++|+..+++
T Consensus 392 ~l~~~~~~~~~---~~~l~~~~~~l~~~l~-----------d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 392 CILEGPEPSQL---KPLVIQAMPTLIELMK-----------DPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HTSSSSCTTTT---CTTTTTHHHHHHHGGG-----------CSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHhcCCcHHHH---HHHHHHHHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHhccc
Confidence 77752211111 1112334444444442 12467899999999999998865
No 39
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=23.18 E-value=63 Score=31.60 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=76.9
Q ss_pred hHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHH
Q 046182 241 ILASVIHHLDHKNVSHDPQLKSYVIQVATALARQ-IRSGMVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNS 319 (898)
Q Consensus 241 lLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~-ak~~ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~A 319 (898)
++..|++.|.+ .++.+|...+.++..++.. ..........|++.-|++.|+. .+...+..
T Consensus 55 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~---------------~~~~v~~~ 115 (252)
T 4db8_A 55 ALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---------------PNEQILQE 115 (252)
T ss_dssp HHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC---------------SCHHHHHH
T ss_pred cHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC---------------CCHHHHHH
Confidence 67889999988 3488888877777766641 1111112222455555555532 13467777
Q ss_pred HHHHHHHHhccCCCC-chhHH--HHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCC-----CCcHHHHHHHH
Q 046182 320 IEDCLLEIAKGIGDT-RPLFD--MMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQ-----VFPEALLVQIL 391 (898)
Q Consensus 320 vi~cLgq~a~kv~D~-qpi~d--MMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~k-----aFPeall~qLL 391 (898)
...+|+.++..-+.. +.+.+ .+-.+++-+.... .+ .....+..+-+++.... ..-...+..|+
T Consensus 116 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~-------v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 186 (252)
T 4db8_A 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQ-------ILQEALWALSNIASGGNEQIQAVIDAGALPALV 186 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC--HH-------HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC--HH-------HHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHH
Confidence 788888887543222 11110 0111111111111 01 11112444444443211 01122455677
Q ss_pred HHccCCCchhhHHHHHHHHHhh
Q 046182 392 KAMLHPNVETRVGAHQIFSVLL 413 (898)
Q Consensus 392 ~amlhpD~EtRv~ah~Ifs~lL 413 (898)
..+-++|+++|..|-.++..|.
T Consensus 187 ~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 187 QLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHHHHHHHh
Confidence 7888999999999999999986
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=23.10 E-value=54 Score=31.19 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=72.6
Q ss_pred hHHHHHhhhccCCCCCCchhHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHhHhhhccccCccchhHHHHHHHH
Q 046182 241 ILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSG-MVLVEIGSVSDLCRHLRKSFQATVESVGEQESNLNILLRNS 319 (898)
Q Consensus 241 lLs~LikHLDhKnv~~~P~~q~~IV~V~t~la~~ak~~-ss~avl~aisdLlrHLRkSi~~s~~~~~~~~~~~n~~lQ~A 319 (898)
.+..|++-|.+ .++.+|...+.++..++...... ....-.|++.-|++.|+. .+...+..
T Consensus 55 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~---------------~~~~v~~~ 115 (210)
T 4db6_A 55 ALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---------------PNEQILQE 115 (210)
T ss_dssp HHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC---------------SCHHHHHH
T ss_pred CHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC---------------CcHHHHHH
Confidence 56777888877 37888888777776665311100 001112344445444421 13566777
Q ss_pred HHHHHHHHhccCCC-------CchhHHHHHHhhccCCCCcccccchhhHHHHHHHHHHHHhhhccCCC-----CCcHHHH
Q 046182 320 IEDCLLEIAKGIGD-------TRPLFDMMAMTLEKLPSSGVIARATLGSLIILAHMISVASISSRSQQ-----VFPEALL 387 (898)
Q Consensus 320 vi~cLgq~a~kv~D-------~qpi~dMMaImLenIp~~~~vartti~a~~~ta~il~Sl~~vs~~~k-----aFPeall 387 (898)
...+|+.++..-++ .|-+..++..+ .. .. .+....+ +..|-++..... ..-.-.+
T Consensus 116 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~---~~--~~v~~~a-------~~aL~~l~~~~~~~~~~~~~~g~i 182 (210)
T 4db6_A 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLL-SS---PN--EQILQEA-------LWALSNIASGGNEQKQAVKEAGAL 182 (210)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TC---SC--HHHHHHH-------HHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH-cC---CC--HHHHHHH-------HHHHHHHHcCCcHHHHHHHHCCCH
Confidence 77888888864322 22222222222 21 11 1111112 333333332210 1112345
Q ss_pred HHHHHHccCCCchhhHHHHHHHHHh
Q 046182 388 VQILKAMLHPNVETRVGAHQIFSVL 412 (898)
Q Consensus 388 ~qLL~amlhpD~EtRv~ah~Ifs~l 412 (898)
..|+..+-++|+++|-.|...+..|
T Consensus 183 ~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 183 EKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5677788899999999999988876
No 41
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=21.82 E-value=32 Score=30.72 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=15.0
Q ss_pred CCccccc--ccccCC-CcccccCCCc
Q 046182 1 MGFISRK--IFPACG-SMCVCCPALR 23 (898)
Q Consensus 1 mgvisr~--v~paC~-~lC~cCpaLR 23 (898)
+|.+.|- ...+|. |=|+.||.=.
T Consensus 43 ~G~l~R~~~~~~~C~sgsC~sC~~~~ 68 (87)
T 2k02_A 43 MGKVVRISETSEGCLSGSCKSCPEGK 68 (87)
T ss_dssp TCCSEEEEEECCSSCSSSSSSCSSCC
T ss_pred CCCEEEEecCCCCCCCCCCCCCCCcc
Confidence 4888887 467892 3466677643
Done!