BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046185
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OHD|A Chain A, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|B Chain B, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|C Chain C, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|D Chain D, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|E Chain E, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|F Chain F, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
Length = 151
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 84 ICQTHGLPCAHEITEYKRECHPIPLERIDLHWK 116
+ +T G+ A + E CHPIPLE +D+ K
Sbjct: 48 VAKTAGILAAKKTPELIPMCHPIPLEFVDVEIK 80
>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|C Chain C, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|E Chain E, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|G Chain G, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
Length = 184
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 250 IKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLD 291
IK + DG C FRA+AD + +D VRK ++ L + D
Sbjct: 48 IKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNAD 89
>pdb|2BWM|A Chain A, 1.8a Crystal Structure Of Of Psathyrella Velutina Lectin
In Complex With Methyl
2-Acetamido-1,2-Dideoxy-1-Seleno-Beta- D-Glucopyranoside
pdb|2BWR|A Chain A, Crystal Structure Of Psathyrella Velutina Lectin At 1.5a
Resolution
pdb|2BWR|B Chain B, Crystal Structure Of Psathyrella Velutina Lectin At 1.5a
Resolution
pdb|2C25|A Chain A, 1.8a Crystal Structure Of Psathyrella Velutina Lectin In
Complex With N-Acetylneuraminic Acid
pdb|2C25|B Chain B, 1.8a Crystal Structure Of Psathyrella Velutina Lectin In
Complex With N-Acetylneuraminic Acid
pdb|2C4D|A Chain A, 2.6a Crystal Structure Of Psathyrella Velutina Lectin In
Complex With N-Acetylglucosamine
Length = 401
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 263 AIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILS 310
+ADL+G G G +R LL ++ ++++G G RV + + +L+
Sbjct: 17 GVADLVGFGNGGVYIIRNSLLIQVVKVINNFGYDAGGWRVEKHVRLLA 64
>pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein
Aq1575 From Aquifex Aeolicus
Length = 249
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 52 RGFISIIALNITLSEL-KRAISIGVDRSACGCVICQTHGLPCAHEITEYKR--ECHPIPL 108
+G+I + A ++ EL ++AI +G + G + + +P E+ E K E +P+
Sbjct: 137 KGYIEVPAKEVSEEELLEKAIEVGAEDVQPGEEVHIIYTVP--EELYEVKENLEKLGVPI 194
Query: 109 ERIDLHWKKLNLVAVTQKQ 127
E+ + WK ++ V + ++
Sbjct: 195 EKAQITWKPISTVQINDEE 213
>pdb|3LTX|A Chain A, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|B Chain B, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|C Chain C, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|D Chain D, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
Length = 243
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 304 ELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLF 341
EL+H++++ +N P +D +++ D HLI C+ +L
Sbjct: 48 ELVHLINWAKNVPGYTD--LSLSDQVHLIECCWMELLL 83
>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5
Length = 185
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 250 IKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLD 291
IK DG C FRA+AD + +D VRK + L + D
Sbjct: 61 IKQXKEDGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNAD 102
>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba
Length = 184
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 250 IKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLD 291
IK DG C FRA+AD + +D VRK + L + D
Sbjct: 48 IKQXKEDGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNAD 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,791,357
Number of Sequences: 62578
Number of extensions: 418803
Number of successful extensions: 875
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 7
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)