BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046185
(380 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46213|SYI_THEMA Isoleucine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=ileS PE=3 SV=2
Length = 919
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 27/127 (21%)
Query: 87 THGLPCAHEIT-------------EYKRECHPIPLERIDLHWKKLNLVAVTQK-QKVKLS 132
THGLP H ++ E +++C L +D+ ++ + V + ++
Sbjct: 96 THGLPIEHRVSQELGEKIKEMSPAEIRKKCEEFALRFVDIQREEFKRLGVRGDWENPYIT 155
Query: 133 FQPEFEL-ILDILKKLKEIAN-----------PGC-TFLLDPEVKTRTRGRPSIKVDTST 179
+P++E+ ILD+ K L E N P C T L + E++ PSI V +
Sbjct: 156 LKPDYEVKILDVFKTLVEQGNVYRSLKPIYWCPRCRTALAEAEIEYHDHKSPSIYVKFRS 215
Query: 180 HRDPSAF 186
DP+ F
Sbjct: 216 KEDPNFF 222
>sp|A5IML2|SYI_THEP1 Isoleucine--tRNA ligase OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=ileS PE=3 SV=1
Length = 919
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 27/127 (21%)
Query: 87 THGLPCAHEIT-------------EYKRECHPIPLERIDLHWKKLNLVAVTQK-QKVKLS 132
THGLP H ++ E +++C L +D+ ++ + V + ++
Sbjct: 96 THGLPIEHRVSQELGEKIKEMSPAEIRKKCEEFALRFVDIQREEFKRLGVRGDWENPYIT 155
Query: 133 FQPEFEL-ILDILKKLKEIAN-----------PGC-TFLLDPEVKTRTRGRPSIKVDTST 179
+P++E+ ILD+ K L E N P C T L + E++ PSI V +
Sbjct: 156 LKPDYEVKILDVFKTLVEEGNVYRSLKPIYWCPRCRTALAEAEIEYHDHKSPSIYVKFRS 215
Query: 180 HRDPSAF 186
DP+ F
Sbjct: 216 KEDPNFF 222
>sp|Q9RKB9|TRI2_STRCO Putative tricorn protease homolog 2 OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=tri2 PE=3 SV=1
Length = 1171
Score = 36.2 bits (82), Expect = 0.46, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 227 STPVKSITFIDEFPVGLQSYIHHIKDVVAD---GNCGFRAIADLIGLGEDGWVQVRKDLL 283
S V + +DE P+ Q ++ ++VV + G CG+ I D+ G GW Q +DL
Sbjct: 930 SRRVAVVPLVDERPLRYQDWVAKRREVVRELSGGRCGYLHIPDM---GGSGWAQFNRDLR 986
Query: 284 NEL 286
E+
Sbjct: 987 MEV 989
>sp|Q5ZIP6|OTU6B_CHICK OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2
SV=1
Length = 302
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 20/142 (14%)
Query: 250 IKDVVADGNCGFRAIADLIGLGEDGW--VQVRKDLLNELYSHLDDY---------GKLYG 298
IK + +DG+C +RAI D + + W +R ++SH DD+ G +Y
Sbjct: 158 IKQIPSDGHCMYRAIEDQLKDHHNSWTVATLRNQTAKYIHSHFDDFLPFLTNPNTGDMYS 217
Query: 299 PERVNELIHILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRSEP 358
E + ++ W + + + H++ + VV + S + +P
Sbjct: 218 KEEFEKYCDDIANTAAWGGQ----LELRALSHILQTPIEVV--QMDSPSIIVGEEYSGKP 271
Query: 359 VHILSRRNIALGYVFGNHFVEV 380
+ ++ R+ Y G H+ V
Sbjct: 272 IILVYMRH---AYGLGEHYNSV 290
>sp|B9K8X3|SYI_THENN Isoleucine--tRNA ligase OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=ileS PE=3 SV=1
Length = 918
Score = 35.0 bits (79), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 27/127 (21%)
Query: 87 THGLPCAHEIT-------------EYKRECHPIPLERIDLHWKKLNLVAVTQK-QKVKLS 132
THGLP H ++ E +++C L+ +++ ++ + V ++
Sbjct: 96 THGLPIEHRVSQELGDRIKEMSPAEIRKKCEEFALKFVEIQKEEFKRLGVRGDWNNPYIT 155
Query: 133 FQPEFEL-ILDILKKLKEIAN-----------PGC-TFLLDPEVKTRTRGRPSIKVDTST 179
+P++E+ ILD+ K L E N P C T L + E++ PSI V +
Sbjct: 156 LKPDYEVKILDVFKTLVEQGNVYRSLKPIYWCPRCRTALAEAEIEYHDHRSPSIYVKFRS 215
Query: 180 HRDPSAF 186
DP+ +
Sbjct: 216 KDDPNLY 222
>sp|P23253|TCNA_TRYCR Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1
Length = 1162
Score = 33.5 bits (75), Expect = 2.9, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 165 TRTRGRPSIKVDTSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGRPKTKV 224
+ G PS VD+S H PS S S + S V S++ +T + A+ G P T V
Sbjct: 870 SSAHGTPSTPVDSSAHSTPSTPADS-SAHSTPSTPVDSSAHSTPSTPADSSAHGTPSTPV 928
Query: 225 NNS 227
++S
Sbjct: 929 DSS 931
Score = 32.0 bits (71), Expect = 8.0, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 165 TRTRGRPSIKVDTSTHRDPSAFEISLSGQESCSLNVKSNSVTTTKSKAEVKRRGRPKTKV 224
+ G PS VD+S H PS + S + S V S++ +T + + G P T V
Sbjct: 786 SSAHGTPSTPVDSSAHSTPST-PVDSSAHGTPSTPVDSSAHSTPSTPVDSSAHGTPSTPV 844
Query: 225 NNS 227
++S
Sbjct: 845 DSS 847
>sp|Q9XDB4|SYI_FERPD Isoleucine--tRNA ligase OS=Fervidobacterium pennivorans (strain DSM
9078 / Ven5) GN=ileS PE=3 SV=3
Length = 912
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 27/127 (21%)
Query: 87 THGLPCAHEIT-------------EYKRECHPIPLERIDLHWKKLNLVAVTQK-QKVKLS 132
THGLP H +T E ++ C L+ +D+ ++ + V + ++
Sbjct: 96 THGLPIEHRVTTSLGEEAKKKSPAEIRKLCKEFALKYVDIQREEFKRLGVKGDWEHPYIT 155
Query: 133 FQPEFEL-ILDILKKLKEIAN-----------PGC-TFLLDPEVKTRTRGRPSIKVDTST 179
P++E ILD+ K L E N P C T L + E++ PSI V
Sbjct: 156 LDPDYEYHILDVFKTLVENGNVYRGNKPVYWCPTCRTALAEAEIEYHDHESPSIYVKFQM 215
Query: 180 HRDPSAF 186
P +
Sbjct: 216 VDKPDTY 222
>sp|O74535|CPSFX_SCHPO Cleavage and polyadenylation factor complex subunit C74.02c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC74.02c PE=1 SV=1
Length = 710
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 33/200 (16%)
Query: 144 LKKLKEIANPGCTFLLDPEVK----TRTRGRPSIKVDTSTHRDPSAFEISLSGQESCSLN 199
L KE ++PG + D + + T P + + T R+P + SLN
Sbjct: 106 LSSNKEPSSPGISPSNDSQSQNTNHTSISANPYVNNPSHTSRNPDS---------GSSLN 156
Query: 200 VKSNSVTTTKSKAEVKRRGRPKTKVNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNC 259
S+ V ++KS V+ R K+K + S +++ + L ++ I V A C
Sbjct: 157 TASHEVPSSKSDVNVQMLARLKSKSRQK--ISSSDPLEDLRLTLTECLNPINIVQAPKEC 214
Query: 260 GFRAIADLIGLGEDGWVQVRKDLL-----NELYSHLDDYG-KLYGPERVN---------- 303
+ + + +D V DLL N +YS L D G KL+ P+ N
Sbjct: 215 AAILVNLMSNITQDDQKLVFLDLLKSKVGNSIYSQLVDGGRKLFLPKLRNWFVSAIRSKH 274
Query: 304 -ELIH-ILSYYENWPASSDR 321
ELIH IL N P ++++
Sbjct: 275 DELIHLILLVLANLPLTTEK 294
>sp|A7HMY6|SYI_FERNB Isoleucine--tRNA ligase OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=ileS PE=3 SV=1
Length = 913
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 27/127 (21%)
Query: 87 THGLPCAHEIT-------------EYKRECHPIPLERIDLHWKKLNLVAVTQK-QKVKLS 132
THGLP H +T E ++ C L+ +D+ ++ + V + ++
Sbjct: 96 THGLPIEHRVTTTLGEEAKKKSPVEIRKLCKEFALKYVDIQREEFKRLGVKGDWEHPYIT 155
Query: 133 FQPEFEL-ILDILKKLKEIAN-----------PGC-TFLLDPEVKTRTRGRPSIKVDTST 179
P++E ILD+ K L E N P C T L + E++ PSI V
Sbjct: 156 LTPDYEYHILDVFKTLVENGNVYRGNKPVYWCPTCRTALAEAEIEYHDHESPSIYVKFQM 215
Query: 180 HRDPSAF 186
P +
Sbjct: 216 VDQPDTY 222
>sp|Q4FPA9|SYI_PELUB Isoleucine--tRNA ligase OS=Pelagibacter ubique (strain HTCC1062)
GN=ileS PE=3 SV=1
Length = 905
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 96 ITEYKRECHPIPLERIDLH---WKKLNLVAVTQKQKVKLSFQPEFELILDILKKLKE 149
ITE+++EC + I++H +K+L +V + +SF+ E +++ ++ K LKE
Sbjct: 120 ITEFRKECREFAEKWIEVHKTQFKRLGVVGDWENHYATMSFEAEAQIVRELGKFLKE 176
>sp|B2A2I8|SYI_NATTJ Isoleucine--tRNA ligase OS=Natranaerobius thermophilus (strain ATCC
BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=ileS PE=3 SV=1
Length = 926
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 31/118 (26%)
Query: 87 THGLPCAHEIT-------------EYKRECHPIPLERIDLHWKKLNLVAVTQK-QKVKLS 132
THGLP H+IT E++++CH ++ +++ ++ + V L+
Sbjct: 96 THGLPIEHQITKTEKVDRKSMSDVEFRKKCHDYAMKYVEIQKEEFKRLGVRGDWDNPYLT 155
Query: 133 FQPEFELILDILKKLKEIANPG-----------C----TFLLDPEVKTRTRGRPSIKV 175
PEFE + +K E+A G C T L + EV+ + PSI V
Sbjct: 156 LSPEFE--AEQVKLFGEMAQKGYIYKGLKPVYWCTDCETALAEAEVEYHDKRSPSIYV 211
>sp|Q5T2D3|OTUD3_HUMAN OTU domain-containing protein 3 OS=Homo sapiens GN=OTUD3 PE=1 SV=1
Length = 398
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 215 KRRGRPKTKVNNSTPVKSITFIDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDG 274
+RR RP++ + ++F ++ LQ+ +++V DGNC FRA+ D +
Sbjct: 36 ERRNRPESGGGGGCEEEFVSFANQ----LQALGLKLREVPGDGNCLFRALGDQLEGHSRN 91
Query: 275 WVQVRKDLLNELYSHLDDY 293
++ R++ ++ + +D+
Sbjct: 92 HLKHRQETVDYMIKQREDF 110
>sp|Q91PP5|POLG_RTSVT Genome polyprotein OS=Rice tungro spherical virus (strain Vt6) PE=1
SV=1
Length = 3471
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 299 PERVNELIHILS--YYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLTFLPLRS 356
P +NE++ S Y + W + RW++ ++ C++ + + V +RS
Sbjct: 2054 PGHLNEILRDGSGCYIDEWAIAGPRWLSFHELLPFTCGCHHTRVCDFNIVYNNMCKAVRS 2113
Query: 357 EPVHILSRRNIALGYVF 373
+ VH R N A+ Y +
Sbjct: 2114 QSVHFKYRANQAIKYAY 2130
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,153,950
Number of Sequences: 539616
Number of extensions: 5836682
Number of successful extensions: 14403
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 14376
Number of HSP's gapped (non-prelim): 48
length of query: 380
length of database: 191,569,459
effective HSP length: 119
effective length of query: 261
effective length of database: 127,355,155
effective search space: 33239695455
effective search space used: 33239695455
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)