Query 046185
Match_columns 380
No_of_seqs 252 out of 340
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:32:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 99.8 1.2E-20 4.2E-25 171.6 7.9 126 242-380 53-179 (185)
2 3by4_A OTU1, ubiquitin thioest 99.8 2.8E-19 9.6E-24 166.0 7.2 119 246-380 18-137 (212)
3 3phx_A RNA-directed RNA polyme 99.7 6.5E-17 2.2E-21 147.1 6.2 115 248-380 31-157 (185)
4 3phu_A RNA-directed RNA polyme 99.6 1.9E-16 6.3E-21 147.5 6.9 118 248-380 31-157 (219)
5 1tff_A Ubiquitin thiolesterase 99.3 1.9E-12 6.4E-17 121.7 8.7 93 276-380 133-228 (234)
6 2zfy_A Ubiquitin thioesterase 99.1 1E-10 3.5E-15 109.9 7.5 92 277-380 137-232 (234)
7 4dhi_B Ubiquitin thioesterase 99.0 1.7E-09 5.9E-14 103.9 9.5 91 276-379 171-270 (284)
8 4ddg_A Ubiquitin-conjugating e 98.9 1.1E-09 3.9E-14 110.1 6.7 95 274-380 299-397 (399)
9 3dkb_A Tumor necrosis factor, 98.7 1.3E-07 4.5E-12 92.6 12.3 128 251-380 115-280 (390)
10 3zrh_A Ubiquitin thioesterase 98.2 2.7E-06 9.2E-11 84.8 8.5 120 251-380 192-346 (454)
11 1ku3_A Sigma factor SIGA; heli 34.0 46 0.0016 23.9 4.1 52 236-287 8-59 (73)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.82 E-value=1.2e-20 Score=171.58 Aligned_cols=126 Identities=21% Similarity=0.189 Sum_probs=92.9
Q ss_pred hhhhhcccccccCCCCCccHHHHHHHhccCCchHHHHHHHHHHHHhhcccccccccCChhHHHHHHHhccCCCCCCCccc
Q 046185 242 GLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDR 321 (380)
Q Consensus 242 ~l~~~i~~i~dv~gDGhCgFraiA~~lg~~e~~~~~VR~~l~~el~~~~~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 321 (380)
.++...+.+++|+|||||+|||||+||..+++.|..||+.++++|++++++|.+|+. +.|++|++.|. .+..
T Consensus 53 l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~-~~~e~Y~~~m~-------~~~~ 124 (185)
T 3pfy_A 53 LRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVT-EDFTTYINRKR-------KNNC 124 (185)
T ss_dssp HHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC------------------------
T ss_pred HHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHhh-------CCCc
Confidence 347889999999999999999999999999999999999999999999999999885 57999999985 5678
Q ss_pred ccccccchhhhhhccceEEEEEeCCc-ceeeecCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185 322 WMTMPDMGHLIASCYNVVLFHLSSVQ-CLTFLPLRSEPVHILSRRNIALGYVFGNHFVEV 380 (380)
Q Consensus 322 Wl~~p~~G~iiA~~y~~pI~~ls~~~-s~t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~v 380 (380)
|++..+. .++|..|+++|++++.+. ...+++.. .....++|+|+|.+++||++|
T Consensus 125 WGg~iEL-~AlS~~~~v~I~V~~~~~~~i~i~~g~----~~~~~~~I~L~Y~~~~HYnSv 179 (185)
T 3pfy_A 125 HGNHIEM-QAMAEMYNRPVEVYQYSTEPINTFHGI----HQNEDEPIRVSYHRNIHYNSV 179 (185)
T ss_dssp -CCHHHH-HHHHHHHTSCEEEESSCSSCSEEECTT----SCCTTSCEEEEEETTTEEEEE
T ss_pred cchHHHH-HHHHHhhCCcEEEEECCCCCeEEecCc----cCCCCCEEEEEECCCCCcccc
Confidence 9998764 899999999999998653 34445421 112247899999999999876
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.77 E-value=2.8e-19 Score=165.96 Aligned_cols=119 Identities=14% Similarity=0.219 Sum_probs=99.7
Q ss_pred hcccccccCCCCCccHHHHHHHhccCCchHHHHHHHHHHHHhhcccccccccCChhHHHHHHHhccCCCCCCCccccccc
Q 046185 246 YIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDRWMTM 325 (380)
Q Consensus 246 ~i~~i~dv~gDGhCgFraiA~~lg~~e~~~~~VR~~l~~el~~~~~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~Wl~~ 325 (380)
-++.+.+|+|||||+|||||+|| .+++.|..||+.++++|++|+++|.+++.++.|++|++.|. .+..|++.
T Consensus 18 ~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~-------~~~~WGg~ 89 (212)
T 3by4_A 18 NVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWIL-------KMESWGGA 89 (212)
T ss_dssp SEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTT-------STTSCCCH
T ss_pred CCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhc-------CCCEEccH
Confidence 46788999999999999999999 78899999999999999999999987666788999999995 55789988
Q ss_pred ccchhhhhhccceEEEEEeCC-cceeeecCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185 326 PDMGHLIASCYNVVLFHLSSV-QCLTFLPLRSEPVHILSRRNIALGYVFGNHFVEV 380 (380)
Q Consensus 326 p~~G~iiA~~y~~pI~~ls~~-~s~t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~v 380 (380)
++. .|+|..|+++|++++.. .....|+. .. ..++|+|+|. ++||.+|
T Consensus 90 iEL-~Als~~~~~~I~V~~~~~~~~~~~~~----~~--~~~~I~L~Y~-g~HYdsl 137 (212)
T 3by4_A 90 IEI-GIISDALAVAIYVVDIDAVKIEKFNE----DK--FDNYILILFN-GIHYDSL 137 (212)
T ss_dssp HHH-HHHHHHHTCEEEEEETTTTEEEEEST----TT--CSEEEEEEEC-SSCEEEE
T ss_pred HHH-HHHHHHHCCCEEEEECCCCCeEEeCC----CC--CCCeEEEEEc-CCcceEE
Confidence 765 89999999999999854 33344432 11 2468999997 9999875
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.66 E-value=6.5e-17 Score=147.10 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=91.0
Q ss_pred ccccccCCCCCccHHHHHHHhccC-Cch-----HHHHHHHHHHHHhhcccccccccCChhHHHHHHHhccCCCCCCCccc
Q 046185 248 HHIKDVVADGNCGFRAIADLIGLG-EDG-----WVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDR 321 (380)
Q Consensus 248 ~~i~dv~gDGhCgFraiA~~lg~~-e~~-----~~~VR~~l~~el~~~~~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 321 (380)
..++.|+|||||+|||||+||+.+ ++. |..||+.++++|++|+++ ++.++.|++|++.+. .++.
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~---~~~~~~~~~Y~~~m~-------~~~~ 100 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA---RLVGLSLEDYLKRML-------SDNE 100 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH---HHHCCCHHHHHHHHT-------STTC
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh---hhcCCCHHHHHHHhh-------CCCc
Confidence 445677999999999999999987 565 999999999999999988 223678999999995 5678
Q ss_pred ccccccchhhhhhccceEEEEEeCCcc------eeeecCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185 322 WMTMPDMGHLIASCYNVVLFHLSSVQC------LTFLPLRSEPVHILSRRNIALGYVFGNHFVEV 380 (380)
Q Consensus 322 Wl~~p~~G~iiA~~y~~pI~~ls~~~s------~t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~v 380 (380)
|++..+. .++|..|+++|++++.... ..|- +.. ..++|+|+|.+++||.+|
T Consensus 101 WGg~iEL-~Als~~~~v~I~V~~~d~~~~~~~i~~f~-----~~~--~~~~I~L~Y~g~~HYdsl 157 (185)
T 3phx_A 101 WGSTLEA-SMLAKEMGITIIIWTVAASDEVEAGIKFG-----DGD--VFTAVNLLHSGQTHFDAL 157 (185)
T ss_dssp CCBHHHH-HHHHHHHCCCEEEEEC--CCBCCEEEEES-----SCC--TTTSEEEEEETTTEEEEE
T ss_pred cCcHHHH-HHHHHHHCCcEEEEEecCCCCceEEEEcC-----CCC--CCCEEEEEECCCcCchhc
Confidence 9988764 8999999999999974322 2221 221 146899999866999875
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.63 E-value=1.9e-16 Score=147.47 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=91.5
Q ss_pred ccccccCCCCCccHHHHHHHhccC-Cch-----HHHHHHHHHHHHhhcccccccccCChhHHHHHHHhccCCCCCCCccc
Q 046185 248 HHIKDVVADGNCGFRAIADLIGLG-EDG-----WVQVRKDLLNELYSHLDDYGKLYGPERVNELIHILSYYENWPASSDR 321 (380)
Q Consensus 248 ~~i~dv~gDGhCgFraiA~~lg~~-e~~-----~~~VR~~l~~el~~~~~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 321 (380)
..++.|+|||||.|||||+||+.+ ++. |..||+.++++|++|+++ ++.++.|++|++.+. .++.
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~---~~~~~~feeY~~~m~-------~~g~ 100 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA---RLVGLSLEDYLKRML-------SDNE 100 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH---HHHCCCHHHHHHHHH-------STTC
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh---hhcCCCHHHHHHHhc-------CCCc
Confidence 456788999999999999999987 555 899999999999999988 223678999999996 5678
Q ss_pred ccccccchhhhhhccceEEEEEeCCcc---eeeecCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185 322 WMTMPDMGHLIASCYNVVLFHLSSVQC---LTFLPLRSEPVHILSRRNIALGYVFGNHFVEV 380 (380)
Q Consensus 322 Wl~~p~~G~iiA~~y~~pI~~ls~~~s---~t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~v 380 (380)
|++..+. .++|..|+++|++++.... .... .++ +.. ..++|+|+|.+++||.+|
T Consensus 101 WGG~iEL-~AlS~~~~v~I~V~~~d~~g~~~~i~-~fg-e~~--~~~~I~L~Y~g~~HYdSL 157 (219)
T 3phu_A 101 WGSTLEA-SMLAKEMGITIIIWTVAASDEVEAGI-KFG-DGD--VFTAVNLLHSGQTHFDAL 157 (219)
T ss_dssp CCCHHHH-HHHHHHTTCCEEEEEESSSSBEEEEE-EES-SCC--TTTSEEEEEETTTEEEEE
T ss_pred cCCHHHH-HHHHHHhCCCEEEEEecCCCCceeEE-Eec-CCC--CCCeEEEEECCCcCchhh
Confidence 9988764 8999999999999864322 1111 111 221 146899999866999875
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.34 E-value=1.9e-12 Score=121.73 Aligned_cols=93 Identities=6% Similarity=-0.023 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhcccccccccCC-hhHHHHHH-HhccCCCCCCCcccccccccchhhhhhccceEEEEEeCCcce-eee
Q 046185 276 VQVRKDLLNELYSHLDDYGKLYGP-ERVNELIH-ILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCL-TFL 352 (380)
Q Consensus 276 ~~VR~~l~~el~~~~~~y~~~~~~-~~~~~~~~-~L~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~~~s~-t~~ 352 (380)
..+|.....+|++|+++|.+|+.+ ..+++++. .+. +++.|.+...+ .|||+++++||.++..+.+. .+-
T Consensus 133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve-------~~~~~~~~iei-~ALa~aL~v~I~V~~~d~~~~~~~ 204 (234)
T 1tff_A 133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVE-------PMATECDHIQI-TALSQALSIALQVEYVDEMDTALN 204 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTS-------STTCCCCHHHH-HHHHHHHTCCEEEEECC-------
T ss_pred HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhh-------hhhcccccHHH-HHHHHHhCCCEEEEEcCCCCCccc
Confidence 457888899999999999999973 47999999 674 67899988765 89999999999999865543 222
Q ss_pred cCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185 353 PLRSEPVHILSRRNIALGYVFGNHFVEV 380 (380)
Q Consensus 353 P~~~~p~~~~~~~~I~L~~~~~nHfv~v 380 (380)
+...++ . ..+.|+|+|. +.||+.+
T Consensus 205 ~~~~~~-~--~~~~I~LlY~-pgHYdil 228 (234)
T 1tff_A 205 HHVFPE-A--ATPSVYLLYK-TSHYNIL 228 (234)
T ss_dssp CCCCCC-C--SSCSEEEEEE-TTEEEEE
T ss_pred cccCCC-C--CCCeEEEEEC-CCCceec
Confidence 222222 2 2367999998 5699864
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.10 E-value=1e-10 Score=109.85 Aligned_cols=92 Identities=12% Similarity=-0.023 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhcccccccccC-ChhHHHHHH-HhccCCCCCCCcccccccccchhhhhhccceEEEEEeCCccee--ee
Q 046185 277 QVRKDLLNELYSHLDDYGKLYG-PERVNELIH-ILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQCLT--FL 352 (380)
Q Consensus 277 ~VR~~l~~el~~~~~~y~~~~~-~~~~~~~~~-~L~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~~~s~t--~~ 352 (380)
.+|.....+|++|+++|.+|+. +..+++++. .+. +++.|.+...+ .|||+++++||.++....+.. .-
T Consensus 137 ~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve-------~~~~~~~~i~i-~ALa~al~v~I~V~~~d~~~~~~v~ 208 (234)
T 2zfy_A 137 YLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVE-------PMCKESDHIHI-IALAQALSVSIQVEYMDRGEGGTTN 208 (234)
T ss_dssp HHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTS-------STTCCCCHHHH-HHHHHHHTCCEEEEECC-CCSSCCE
T ss_pred HHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhh-------hHhhcCCHHHH-HHHHHHhCCCEEEEEcCCCCCCccc
Confidence 5677777899999999999997 458999997 574 67889987765 799999999999987544321 11
Q ss_pred cCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185 353 PLRSEPVHILSRRNIALGYVFGNHFVEV 380 (380)
Q Consensus 353 P~~~~p~~~~~~~~I~L~~~~~nHfv~v 380 (380)
+..-++ . ..+.|+|+|. +.||+.+
T Consensus 209 ~~~f~~-~--~~p~I~LlY~-pgHYdiL 232 (234)
T 2zfy_A 209 PHIFPE-G--SEPKVYLLYR-PGHYDIL 232 (234)
T ss_dssp EEEEST-T--CCCSEEEEEE-TTEEEEE
T ss_pred ceeCCC-C--CCCeEEEEEC-CCCcccC
Confidence 111112 2 1367999998 5699863
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=98.95 E-value=1.7e-09 Score=103.88 Aligned_cols=91 Identities=10% Similarity=-0.028 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhcccccccccC-ChhHHHHHH-HhccCCCCCCCcccccccccchhhhhhccceEEEEEeCCcc-----
Q 046185 276 VQVRKDLLNELYSHLDDYGKLYG-PERVNELIH-ILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQC----- 348 (380)
Q Consensus 276 ~~VR~~l~~el~~~~~~y~~~~~-~~~~~~~~~-~L~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~~~s----- 348 (380)
..+|.....+|+.|+++|.+|+. ...+++++. .+. ++++|.+...+ .+||++|++||.++..+.+
T Consensus 171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe-------~~~~e~d~leI-~ALa~aL~v~I~V~ylDrs~g~~v 242 (284)
T 4dhi_B 171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIE-------PMWKDADHLAI-NSLIKAAGTRVRIEYMDRTAAPNG 242 (284)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTS-------STTCCCCHHHH-HHHHHHTTCCEEEEESSGGGCTTS
T ss_pred HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhce-------ehhhcccHHHH-HHHHHHhCCcEEEEEecCCCCCCC
Confidence 34677788899999999999997 457999998 775 77899988755 7999999999988654322
Q ss_pred --eeeecCCCCCCCCCCCCcEEEEEecCCcccc
Q 046185 349 --LTFLPLRSEPVHILSRRNIALGYVFGNHFVE 379 (380)
Q Consensus 349 --~t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~ 379 (380)
...||... .+..|.|+|.|- +.||..
T Consensus 243 ~~h~~fp~~~----~~~~p~I~LLYr-pgHYDI 270 (284)
T 4dhi_B 243 GWHYDIPSDD----QQIAPEITLLYR-PGHYDV 270 (284)
T ss_dssp SSEEEESCCC----SCCCCSEEEEEE-TTEEEE
T ss_pred cccccCCCCC----CCCCCEEEEeec-CCCccc
Confidence 22146432 123467999987 789975
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=98.91 E-value=1.1e-09 Score=110.15 Aligned_cols=95 Identities=14% Similarity=-0.019 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHhhcccccccccC-ChhHHHHHH-HhccCCCCCCCcccccccccchhhhhhccceEEEEEeCCc--ce
Q 046185 274 GWVQVRKDLLNELYSHLDDYGKLYG-PERVNELIH-ILSYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSSVQ--CL 349 (380)
Q Consensus 274 ~~~~VR~~l~~el~~~~~~y~~~~~-~~~~~~~~~-~L~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~~~--s~ 349 (380)
....+|.....+|+.|.++|.+|+. ...+++++. .+. +++.|.+...+ .+||++||++|.++-.+. ..
T Consensus 299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve-------~~~~e~d~l~I-~ALa~al~v~I~V~yld~~~~~ 370 (399)
T 4ddg_A 299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVE-------PMCKESDHIHI-IALAQALSVSIQVEYMDRGEGG 370 (399)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTS-------STTCCBCHHHH-HHHHHHHTCCCEEEECSCCSSS
T ss_pred HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhce-------eHHhhCcHHHH-HHHHHHcCCcEEEEEcCCCCCC
Confidence 3455788888999999999999997 347999999 664 77899988765 799999999988874322 11
Q ss_pred eeecCCCCCCCCCCCCcEEEEEecCCccccC
Q 046185 350 TFLPLRSEPVHILSRRNIALGYVFGNHFVEV 380 (380)
Q Consensus 350 t~~P~~~~p~~~~~~~~I~L~~~~~nHfv~v 380 (380)
...++.. |.+. .+.|+|+|. +.||..+
T Consensus 371 ~v~~~~~-~~~~--~~~I~LLYr-PgHYDiL 397 (399)
T 4ddg_A 371 TTNPHIF-PEGS--EPKVYLLYR-PGHYDIL 397 (399)
T ss_dssp CCCEEET-TTTC--CCCCEEEEE-TBEEEEE
T ss_pred ccceeeC-CCCC--CCEEEEEEc-CCccccC
Confidence 2212211 2222 367999997 7799853
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.67 E-value=1.3e-07 Score=92.64 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=88.1
Q ss_pred cccCCCCCccHHHHHHHhccCCchHHHHHHHHHHHHhhccc-cc----------------cccc-C----ChhHHHHHHH
Q 046185 251 KDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLD-DY----------------GKLY-G----PERVNELIHI 308 (380)
Q Consensus 251 ~dv~gDGhCgFraiA~~lg~~e~~~~~VR~~l~~el~~~~~-~y----------------~~~~-~----~~~~~~~~~~ 308 (380)
....|||||+.+|++..|-.-.|.-..+|+.|.+-|.+... .| ..+. . .++|+.+++.
T Consensus 115 L~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~Iv~~ 194 (390)
T 3dkb_A 115 LKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKM 194 (390)
T ss_dssp BCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHHHHH
T ss_pred EEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHHHHH
Confidence 56789999999999999877778888999999888886421 11 0111 1 3579999998
Q ss_pred hccCCCCCCCccccccc-ccchhhhhhccceEEEEEeC--------C-------cceeeecCCCCCCCCCCCCcEEEEEe
Q 046185 309 LSYYENWPASSDRWMTM-PDMGHLIASCYNVVLFHLSS--------V-------QCLTFLPLRSEPVHILSRRNIALGYV 372 (380)
Q Consensus 309 L~~~~~~~~~~~~Wl~~-p~~G~iiA~~y~~pI~~ls~--------~-------~s~t~~P~~~~p~~~~~~~~I~L~~~ 372 (380)
..+.........--.+. --|-++||+...|||++|+. | .+.+|+|+..+|.-.-. .||+|||-
T Consensus 195 Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~r-sPI~LgY~ 273 (390)
T 3dkb_A 195 ASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYR-YPIVLGYD 273 (390)
T ss_dssp TSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCS-SCEEEEEC
T ss_pred hCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccC-CceEEEec
Confidence 87543211100000111 12677999999999999962 1 14789999988886643 48999987
Q ss_pred cCCccccC
Q 046185 373 FGNHFVEV 380 (380)
Q Consensus 373 ~~nHfv~v 380 (380)
.+||-++
T Consensus 274 -s~HFsaL 280 (390)
T 3dkb_A 274 -SHHFVPL 280 (390)
T ss_dssp -SSCEEEE
T ss_pred -cCceeee
Confidence 5899763
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.21 E-value=2.7e-06 Score=84.76 Aligned_cols=120 Identities=18% Similarity=0.114 Sum_probs=86.4
Q ss_pred cccCCCCCccHHHHHHHhccCCchHHHHHHHHHHHHhhcccc-cc---------------ccc-CC----hhHHHHHHHh
Q 046185 251 KDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELYSHLDD-YG---------------KLY-GP----ERVNELIHIL 309 (380)
Q Consensus 251 ~dv~gDGhCgFraiA~~lg~~e~~~~~VR~~l~~el~~~~~~-y~---------------~~~-~~----~~~~~~~~~L 309 (380)
.-..|||||+.+|++..|-.-.|....+|+.|.+-|++.... |. .|- .+ ++|+.++...
T Consensus 192 L~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv~~A 271 (454)
T 3zrh_A 192 LWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFILSLA 271 (454)
T ss_dssp BCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHT
T ss_pred eeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHh
Confidence 467899999999999999888899999999999988863221 11 111 11 3577777766
Q ss_pred ccCCCCCCCcccccccccchhhhhhccceEEEEEeC-------C-------cceeeecCCCCCCCCCCCCcEEEEEecCC
Q 046185 310 SYYENWPASSDRWMTMPDMGHLIASCYNVVLFHLSS-------V-------QCLTFLPLRSEPVHILSRRNIALGYVFGN 375 (380)
Q Consensus 310 ~~~~~~~~~~~~Wl~~p~~G~iiA~~y~~pI~~ls~-------~-------~s~t~~P~~~~p~~~~~~~~I~L~~~~~n 375 (380)
..++. ..+. -|-++||+...|||++|+. | .+.+|+|+..+|.-.-. .||+|||- -.
T Consensus 272 s~Pg~--sLEe------iHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~r-sPIvLgY~-~g 341 (454)
T 3zrh_A 272 SQPGA--SLEQ------THIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWK-SPIALGYT-RG 341 (454)
T ss_dssp TSTTC--CCCH------HHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCS-CCEEEEEE-TT
T ss_pred cCCcc--hHHH------HHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcC-CceEEEec-cc
Confidence 54321 1111 2778999999999999983 1 23589999988876643 58999997 56
Q ss_pred ccccC
Q 046185 376 HFVEV 380 (380)
Q Consensus 376 Hfv~v 380 (380)
||.++
T Consensus 342 HFsaL 346 (454)
T 3zrh_A 342 HFSAL 346 (454)
T ss_dssp EEEEE
T ss_pred ceeee
Confidence 99763
No 11
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=33.96 E-value=46 Score=23.87 Aligned_cols=52 Identities=10% Similarity=0.192 Sum_probs=38.1
Q ss_pred ccccchhhhhhcccccccCCCCCccHHHHHHHhccCCchHHHHHHHHHHHHh
Q 046185 236 IDEFPVGLQSYIHHIKDVVADGNCGFRAIADLIGLGEDGWVQVRKDLLNELY 287 (380)
Q Consensus 236 ~~q~p~~l~~~i~~i~dv~gDGhCgFraiA~~lg~~e~~~~~VR~~l~~el~ 287 (380)
++++|..-+.-+.-.+-..|+...-+.-||+.||.++..-........+.|.
T Consensus 8 l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 8 LSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4556665555555544455666799999999999998877777777777777
Done!