BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046186
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/419 (45%), Positives = 256/419 (61%), Gaps = 28/419 (6%)
Query: 29 NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
N+CQI+ L ALEP NR++ E G+ E WD ++F+CAGV+V+R TI GLLLP F+++P
Sbjct: 12 NECQIDRLTALEPTNRIQAERGLTEVWDSNEQEFRCAGVSVIRRTIEPHGLLLPSFTSAP 71
Query: 89 QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQ---GGFGESA-----------GRSQQDS 134
+L+YI Q G G PG PETY+S Q GG E G QD
Sbjct: 72 ELIYIEQG----NGITGMMIPGCPETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQ 127
Query: 135 HQKIRRFRQGDIFALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRN-PRKFHLAGNP 193
HQKIR R+GDIFA+PAGV+HW YN G P +N P +F+LAG P
Sbjct: 128 HQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKNFPTRFYLAGKP 187
Query: 194 XXXXXXXXXXXXXXXXXXCN--NVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV 251
N N+F GF+TR+LAE+F V E + ++L++E+D RG IV V
Sbjct: 188 QQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRV 247
Query: 252 RGQLQVARPPRTQSQXXXXXXXXXXXXXXXXXXXXNGVEETMCTMKLRENIGDPSKADIY 311
+ L V +PP NGVEET+C+ +L N+ DPSKAD+Y
Sbjct: 248 QEGLHVIKPP-------SRAWEEREQGSRGSRYLPNGVEETICSARLAVNVDDPSKADVY 300
Query: 312 TQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVV 371
T AG +TT+NSFNLP+LR ++LSA +G+L+RNAMM PH+NLNAH+IMY + G +Q+V
Sbjct: 301 TPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIV 360
Query: 372 DSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMR 430
+ G+SV+D E+ RGQ++VVPQNFA+VK+A FEW+SFKT++NAM L+GRTS +R
Sbjct: 361 NDQGQSVFDEELSRGQLVVVPQNFAIVKQAFEDGFEWVSFKTSENAMFQSLAGRTSAIR 419
>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin
pdb|2E9Q|A Chain A, Recombinant Pro-11s Globulin Of Pumpkin
Length = 459
Score = 347 bits (889), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 177/421 (42%), Positives = 245/421 (58%), Gaps = 16/421 (3%)
Query: 14 FRGCLAANXXXXXXPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHT 73
F+G P C++ NL A +P R E EAG E WD +++FQCAGV ++RHT
Sbjct: 10 FQGSEVWQQHRYQSPRACRLENLRAQDPVRRAEAEAGFTEVWDQDNDEFQCAGVNMIRHT 69
Query: 74 IRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQD 133
IR KGLLLP FSN+P+L+++ Q + G G PG ETYQ+ + +SAG + +D
Sbjct: 70 IRPKGLLLPGFSNAPKLIFVAQGF----GIRGIAIPGCAETYQTDLRRS--QSAGSAFKD 123
Query: 134 SHQKIRRFRQGDIFALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNP 193
HQKIR FR+GD+ +PAGV+HW YN G + RKF+LAG P
Sbjct: 124 QHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRP 183
Query: 194 XXXXXX----XXXXXXXXXXXXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIV 249
N+F GF L EAF +D LVR+L+ E D R IV
Sbjct: 184 EQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIV 243
Query: 250 TVRGQLQVARPPRTQSQXXXXXXXXXXXXXXXXXXXXNGVEETMCTMKLRENIGDPSKAD 309
V +V P + + + NG+EET+CT++L++NIG +AD
Sbjct: 244 QVDEDFEVLLPEKDEEERSRGRYIESESESE------NGLEETICTLRLKQNIGRSERAD 297
Query: 310 IYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQ 369
++ G I+T N LP+LR ++LSAERG+L+ NAM+ PH+ +N+HS+MYA G+ VQ
Sbjct: 298 VFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQ 357
Query: 370 VVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVM 429
VVD++G+SV+DGEVR GQ++++PQNF V+KRA FEWI+FKTNDNA+ + L+GR S M
Sbjct: 358 VVDNFGQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFKTNDNAITNLLAGRVSQM 417
Query: 430 R 430
R
Sbjct: 418 R 418
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 308 bits (789), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 166/429 (38%), Positives = 234/429 (54%), Gaps = 33/429 (7%)
Query: 29 NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
N+CQI L AL+P+NR+E E G++ETW+P ++ FQCAGVA+ R T+ + L P ++N P
Sbjct: 10 NECQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGP 69
Query: 89 QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA 148
Q +YI Q +G G +PG P T++ PQQ + R Q D HQKI FR+GD+ A
Sbjct: 70 QEIYIQQG----KGIFGMIYPGSPSTFEEPQQPQQRGQSSRPQ-DRHQKIYNFREGDLIA 124
Query: 149 LPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXX----------XX 198
+P GVA W YN TP + PR+F+LAGN
Sbjct: 125 VPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ 184
Query: 199 XXXXXXXXXXXXXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKD--YRGAIVTVRGQLQ 256
++ GF L AF+VD+++ + L+ E + +GAIVTV+G L
Sbjct: 185 SQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLS 244
Query: 257 VARPPRTQSQXXXXXXXXXXXXX----------------XXXXXXXNGVEETMCTMKLRE 300
V +PP + Q NG++ET+CTM+LR
Sbjct: 245 VIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRH 304
Query: 301 NIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMY 360
NIG S DIY AG +TT S + P L W++LSAE G L +NAM VPH+NLNA+SI+Y
Sbjct: 305 NIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIY 364
Query: 361 AISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMIS 420
A++G +QVV+ G V+DGE++ G++++VPQNF V R+ FE++SFKTND MI
Sbjct: 365 ALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIG 424
Query: 421 PLSGRTSVM 429
L+G S++
Sbjct: 425 TLAGANSLL 433
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 307 bits (787), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 166/429 (38%), Positives = 234/429 (54%), Gaps = 33/429 (7%)
Query: 29 NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
N+CQI L AL+P+NR+E E G++ETW+P ++ FQCAGVA+ R T+ + L P ++N P
Sbjct: 10 NECQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGP 69
Query: 89 QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA 148
Q +YI Q +G G +PG P T++ PQQ + R Q D HQKI FR+GD+ A
Sbjct: 70 QEIYIQQG----KGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQ-DRHQKIYNFREGDLIA 124
Query: 149 LPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXX----------XX 198
+P GVA W YN TP + PR+F+LAGN
Sbjct: 125 VPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ 184
Query: 199 XXXXXXXXXXXXXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKD--YRGAIVTVRGQLQ 256
++ GF L AF+VD+++ + L+ E + +GAIVTV+G L
Sbjct: 185 SQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLS 244
Query: 257 VARPPRTQSQXXXXXXXXXXXXX----------------XXXXXXXNGVEETMCTMKLRE 300
V +PP + Q NG++ET+CTM+LR
Sbjct: 245 VIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRH 304
Query: 301 NIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMY 360
NIG S DIY AG +TT S + P L W++LSAE G L +NAM VPH+NLNA+SI+Y
Sbjct: 305 NIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIY 364
Query: 361 AISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMIS 420
A++G +QVV+ G V+DGE++ G++++VPQNF V R+ FE++SFKTND MI
Sbjct: 365 ALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIG 424
Query: 421 PLSGRTSVM 429
L+G S++
Sbjct: 425 TLAGANSLL 433
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/429 (38%), Positives = 233/429 (54%), Gaps = 33/429 (7%)
Query: 29 NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
N+ QI L AL+P+NR+E E G++ETW+P ++ FQCAGVA+ R T+ + L P ++N P
Sbjct: 10 NEGQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGP 69
Query: 89 QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA 148
Q +YI Q +G G +PG P T++ PQQ + R Q D HQKI FR+GD+ A
Sbjct: 70 QEIYIQQG----KGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQ-DRHQKIYNFREGDLIA 124
Query: 149 LPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXX----------XX 198
+P GVA W YN TP + PR+F+LAGN
Sbjct: 125 VPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ 184
Query: 199 XXXXXXXXXXXXXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKD--YRGAIVTVRGQLQ 256
++ GF L AF+VD+++ + L+ E + +GAIVTV+G L
Sbjct: 185 SQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLS 244
Query: 257 VARPPRTQSQXXXXXXXXXXXXX----------------XXXXXXXNGVEETMCTMKLRE 300
V +PP + Q NG++ET+CTM+LR
Sbjct: 245 VIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRH 304
Query: 301 NIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMY 360
NIG S DIY AG +TT S + P L W++LSAE G L +NAM VPH+NLNA+SI+Y
Sbjct: 305 NIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIY 364
Query: 361 AISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMIS 420
A++G +QVV+ G V+DGE++ G++++VPQNF V R+ FE++SFKTND MI
Sbjct: 365 ALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIG 424
Query: 421 PLSGRTSVM 429
L+G S++
Sbjct: 425 TLAGANSLL 433
>pdb|3KGL|A Chain A, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|B Chain B, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|C Chain C, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|D Chain D, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|E Chain E, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|F Chain F, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
Length = 466
Score = 295 bits (755), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 167/441 (37%), Positives = 240/441 (54%), Gaps = 61/441 (13%)
Query: 28 PNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNS 87
PN+CQ++ L ALEP++ ++ EAG +E WD Q +C+GV+ VR+ I KGL LP F ++
Sbjct: 4 PNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFST 63
Query: 88 PQLVYILQAYTYRRGSHGDPFPGYPETYQSP---QQGG---FGESAGRSQ---------- 131
+L ++ + G G PG ET+Q Q GG FGE G+ Q
Sbjct: 64 AKLSFVAKG----EGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQ 119
Query: 132 --------------------QDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPXXXXXXX 171
+D HQK+ R GD A GVA W YN+G+ P
Sbjct: 120 GQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVL 179
Query: 172 XXXXXXXXXXRNPRKFHLAGNPXXXXXXXXXXXXXXXXXXCNNVFCGFDTRILAEAFNVD 231
RNPR F+LAGN N+ GF +LA+AF +D
Sbjct: 180 DLASHQNQLDRNPRPFYLAGN----NPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKID 235
Query: 232 ERLVRRLRSEKDYRGAIVTVRGQLQVARPP-RTQSQXXXXXXXXXXXXXXXXXXXXNGVE 290
R ++L++++D RG I+ V+G V RPP R+Q NG+E
Sbjct: 236 VRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRSQ----------------RPQEEVNGLE 279
Query: 291 ETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPH 350
ET+C+ + +N+ DPS AD+Y G+I+TLNS++LP+LR+++LSA RG + +NAM++P
Sbjct: 280 ETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQ 339
Query: 351 WNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWIS 410
WN NA++++Y G HVQVV+ G V+DG+V +GQ++ +PQ F+VVKRA +F WI
Sbjct: 340 WNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIE 399
Query: 411 FKTNDNAMISPLSGRTSVMRG 431
FKTN NA I+ L+GRTSV+RG
Sbjct: 400 FKTNANAQINTLAGRTSVLRG 420
>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|B Chain B, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|C Chain C, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|D Chain D, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|E Chain E, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|F Chain F, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3FZ3|A Chain A, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|B Chain B, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|C Chain C, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|D Chain D, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|E Chain E, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|F Chain F, Crystal Structure Of Almond Pru1 Protein
Length = 531
Score = 258 bits (659), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 185/324 (57%), Gaps = 25/324 (7%)
Query: 133 DSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGN 192
D HQK RR R+GD+ A+PAGVA+W YN+G +NPRKF+LAGN
Sbjct: 168 DRHQKTRRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGN 227
Query: 193 PXXXXXXXXXXX---------------------XXXXXXXCNNVFCGFDTRILAEAFNVD 231
P NNVF GF+T++LA+A NV+
Sbjct: 228 PENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQEQQGNGNNVFSGFNTQLLAQALNVN 287
Query: 232 ERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQXXXXXXXXXXXXXXXXXX----XXN 287
E R L+ + D R I+ VRG L +PPR + + N
Sbjct: 288 EETARNLQGQNDNRNQIIQVRGNLDFVQPPRGRQEREHEERQQEQLQQERQQQGEQLMAN 347
Query: 288 GVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMM 347
G+EET C+++L+ENIG+P +ADI++ AG I+TLNS NLP+LR+++LSAERG +RN +
Sbjct: 348 GLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIY 407
Query: 348 VPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFE 407
PHWN+NAHS++Y I G+ VQVV+ G ++ D EV++GQ+ +VPQN V+++AG FE
Sbjct: 408 SPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGFE 467
Query: 408 WISFKTNDNAMISPLSGRTSVMRG 431
+ +FKT +NA I+ L+GRTS +R
Sbjct: 468 YFAFKTEENAFINTLAGRTSFLRA 491
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 38 ALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAY 97
A EP+NR++ EAG +ETW+ FQCAGVA R TI++ GL LP +SN+PQL+YI+Q
Sbjct: 19 AREPDNRIQAEAGQIETWNFNQGDFQCAGVAASRITIQRNGLHLPSYSNAPQLIYIVQG- 77
Query: 98 TYRRGSHGDPFPGYPETY 115
RG G F G PET+
Sbjct: 78 ---RGVLGAVFSGCPETF 92
>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L
Length = 496
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 140/242 (57%), Gaps = 10/242 (4%)
Query: 29 NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
N+CQ+ L+ALEP+NR+E E G++ETW+P ++QF+CAGVA+ R T+++ L P +SN+P
Sbjct: 8 NECQLERLDALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQRNALRRPYYSNAP 67
Query: 89 QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA 148
Q ++I Q Y G FPG PET++ PQ+ GE GR +D HQK+ RFR+GDI A
Sbjct: 68 QEIFIQQGNGY----FGMVFPGCPETFEEPQESEQGE--GRRYRDRHQKVNRFREGDIIA 121
Query: 149 LPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXXXXXXXXXX--XX 206
+P G+ W YN+ TP + PR+F+LAGN
Sbjct: 122 VPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQ 181
Query: 207 XXXXXCNNVFCGFDTRILAEAFNVDERLVRRL--RSEKDYRGAIVTVRGQLQVARPPRTQ 264
NN+F GF L +AFNV+ +V RL R+E + +GAIV V+G L + PP Q
Sbjct: 182 EQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKGGLSIISPPEKQ 241
Query: 265 SQ 266
++
Sbjct: 242 AR 243
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 105/143 (73%)
Query: 287 NGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAM 346
NG+EET+CT KLR NIG S DIY AG I T+ S +LPVLRW++LSAE G LH+NAM
Sbjct: 311 NGLEETVCTAKLRLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAM 370
Query: 347 MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEF 406
VPH+NLNA+SI+YA+ G +QVV+ G +V+DGE+ G+ + VPQN+AV ++ F
Sbjct: 371 FVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSLSDRF 430
Query: 407 EWISFKTNDNAMISPLSGRTSVM 429
+++FKTND A I+ L+G +SV+
Sbjct: 431 SYVAFKTNDRAGIARLAGTSSVI 453
>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
Length = 510
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 138/227 (60%), Gaps = 11/227 (4%)
Query: 214 NVFCGFDTRILAEAFNVDER-LVRRLR--SEKDYRGAIVTVRGQLQVARPPRTQ------ 264
N+F GF LA+AF VD+R +V+ LR +E + +GAIVTVRG L++ P R +
Sbjct: 241 NIFSGFTPEFLAQAFQVDDRQIVQNLRGENESEEQGAIVTVRGGLRILSPDRKRGADEEE 300
Query: 265 --SQXXXXXXXXXXXXXXXXXXXXNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLN 322
+ NG+EET+CT +++NIG DIY AG + T N
Sbjct: 301 EYDEDEYEYDEEDRRRGRGSRGSGNGIEETICTATVKKNIGRNRSPDIYNPQAGSLKTAN 360
Query: 323 SFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGE 382
NL +LRW+ LSAE G L+RNA+ VPH+N NAHSI+YA+ G HVQVVDS G VYD E
Sbjct: 361 ELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEE 420
Query: 383 VRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVM 429
++ G ++VVPQNFAV ++ FE+++FKT+ I+ L+G SV+
Sbjct: 421 LQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSIANLAGENSVI 467
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 96/176 (54%), Gaps = 16/176 (9%)
Query: 29 NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
N CQ L A P+NR+E E G +ETW+P +++F+CAGVA+ R +R+ L P +SN+P
Sbjct: 10 NACQFQRLNAQRPDNRIESEGGYIETWNPNNQEFECAGVALSRLVLRRNALRRPFYSNAP 69
Query: 89 QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGR------------SQQDSHQ 136
Q ++I Q RG G FPG P TY+ P Q G + R QQDSHQ
Sbjct: 70 QEIFIQQG----RGYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQ 125
Query: 137 KIRRFRQGDIFALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGN 192
K+ RF +GD+ A+P GVA W YN+ T + PR+F+LAGN
Sbjct: 126 KVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPRRFNLAGN 181
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 128/247 (51%), Gaps = 19/247 (7%)
Query: 29 NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
N+CQ+NNL ALEP++RVE E G++ETW+ H + QCAGV V + T+ + GL LP +S P
Sbjct: 7 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYP 66
Query: 89 QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGF--GESAGRSQQDSHQKIRRFRQGDI 146
Q++ ++Q +G+ G FPG PET++ PQQ G + + QDSHQKIR F +GD+
Sbjct: 67 QMIIVVQG----KGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDV 122
Query: 147 FALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXXXXXXXXXXXX 206
+P GV +W YN G P +NPR F+LAGNP
Sbjct: 123 LVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQ 182
Query: 207 XXX-------------XXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRG 253
+V GF LA++FN +E +LRS D R IVTV G
Sbjct: 183 QKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEG 242
Query: 254 QLQVARP 260
L V P
Sbjct: 243 GLSVISP 249
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/134 (53%), Positives = 95/134 (70%)
Query: 287 NGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAM 346
NGVEE +CTMKL ENI PS+AD Y AG I+TLNS LP LR LSA+ +L+RN +
Sbjct: 320 NGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGI 379
Query: 347 MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEF 406
PHWNLNA+S++Y G V+VV+ G +V+DGE+RRGQ++VVPQNF V ++ G
Sbjct: 380 YSPHWNLNANSVIYVTRGKGRVRVVNXQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGL 439
Query: 407 EWISFKTNDNAMIS 420
E++ FKT+ NA+ S
Sbjct: 440 EYVVFKTHHNAVSS 453
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 128/247 (51%), Gaps = 19/247 (7%)
Query: 29 NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
N+CQ+NNL ALEP++RVE E G++ETW+ H + QCAGV V + T+ + GL LP +S P
Sbjct: 6 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYP 65
Query: 89 QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGF--GESAGRSQQDSHQKIRRFRQGDI 146
Q++ ++Q +G+ G FPG PET++ PQQ G + + QDSHQKIR F +GD+
Sbjct: 66 QMIIVVQG----KGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDV 121
Query: 147 FALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXXXXXXXXXXXX 206
+P GV +W YN G P +NPR F+LAGNP
Sbjct: 122 LVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQ 181
Query: 207 XXX-------------XXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRG 253
+V GF LA++FN +E +LRS D R IVTV G
Sbjct: 182 QKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEG 241
Query: 254 QLQVARP 260
L V P
Sbjct: 242 GLSVISP 248
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/134 (53%), Positives = 95/134 (70%)
Query: 287 NGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAM 346
NGVEE +CTMKL ENI PS+AD Y AG I+TLNS LP LR LSA+ +L+RN +
Sbjct: 319 NGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGI 378
Query: 347 MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEF 406
PHWNLNA+S++Y G V+VV+ G +V+DGE+RRGQ++VVPQNF V ++ G
Sbjct: 379 YSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGL 438
Query: 407 EWISFKTNDNAMIS 420
E++ FKT+ NA+ S
Sbjct: 439 EYVVFKTHHNAVSS 452
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS 365
S+ IY+ G + + LR + + ++ A+ VPH+N A I+ A G
Sbjct: 253 SRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGR 312
Query: 366 CHVQVV----------DSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG 403
V++V +S Y + G I+V+P +F V +A
Sbjct: 313 AEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAAS 360
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS 365
S+ IY+ G + + LR + + ++ A+ VPH+N A I+ A G
Sbjct: 13 SRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGR 72
Query: 366 CHVQVV----------DSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG 403
V++V +S Y + G I+V+P +F V +A
Sbjct: 73 AEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAAS 120
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 341 LHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR------SVYDGEVRRGQIMVVPQN 394
+ A+ VPH+ A I+ G HV++V G Y E+ + + V+P
Sbjct: 246 MEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAA 305
Query: 395 FAVVKRA 401
+ V +A
Sbjct: 306 YPVAIKA 312
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 350 HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF--AVVKRAGGAEF 406
HW+ A Y I GS V +VD GRS D +V G + P ++ GAEF
Sbjct: 95 HWHKEA-EWAYXIYGSARVTIVDEKGRSFID-DVGEGDLWYFPSGLPHSIQALEEGAEF 151
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 341 LHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF--AVV 398
L A+ HW+ A Y I GS V +VD GRS D +V G + P ++
Sbjct: 86 LKPGAIAELHWHKEA-EWAYMIYGSARVTIVDEKGRSFID-DVGEGDLWYFPSGLPHSIQ 143
Query: 399 KRAGGAEF 406
GAEF
Sbjct: 144 ALEEGAEF 151
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 350 HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF--AVVKRAGGAEF 406
HW+ A Y I GS V +VD GRS D +V G + P ++ GAEF
Sbjct: 95 HWHKEA-EWAYMIYGSARVTIVDEKGRSFID-DVGEGDLWYFPSGLPHSIQALEEGAEF 151
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 350 HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF--AVVKRAGGAEF 406
HW+ A Y I GS V +VD GRS D +V G + P ++ GAEF
Sbjct: 95 HWHKEA-EWAYMIYGSARVTIVDEKGRSFID-DVGEGDLWYFPSGLPHSIQALEEGAEF 151
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 350 HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF--AVVKRAGGAEF 406
HW+ A Y I GS V +VD GRS D +V G + P ++ GAEF
Sbjct: 95 HWHKEA-EWAYMIYGSARVTIVDEKGRSFID-DVGEGDLWYFPSGLPHSIQALEEGAEF 151
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 350 HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF--AVVKRAGGAEF 406
HW+ A Y I GS V +VD GRS D +V G + P ++ GAEF
Sbjct: 95 HWHKEA-EWAYMIYGSARVTIVDEKGRSFID-DVGEGDLWYFPSGLPHSIQALEEGAEF 151
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 350 HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF--AVVKRAGGAEF 406
HW+ A Y I GS V +VD GRS D +V G + P ++ GAEF
Sbjct: 95 HWHKEA-EWAYMIYGSARVTIVDEKGRSFID-DVGEGDLWYFPSGLPHSIQALEEGAEF 151
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 350 HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF--AVVKRAGGAEF 406
HW+ A Y I GS V +VD GRS D +V G + P ++ GAEF
Sbjct: 90 HWHKEA-EWAYMIYGSARVTIVDEKGRSFID-DVGEGDLWYFPSGLPHSIQALEEGAEF 146
>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
Length = 418
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS 365
S+ IY+ G + + P LR + + ++ A+ +PH+N A ++ G
Sbjct: 223 SRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGE 282
Query: 366 CHVQVVDSYGRSV-------------YDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK 412
++++V + Y E+ I V+P + VV A ++ + +F
Sbjct: 283 ANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNA-TSDLNFFAFG 341
Query: 413 TN 414
N
Sbjct: 342 IN 343
>pdb|3RRS|A Chain A, Crystal Structure Analysis Of Cellobiose Phosphorylase
From Cellulomonas Uda
pdb|3RRS|B Chain B, Crystal Structure Analysis Of Cellobiose Phosphorylase
From Cellulomonas Uda
pdb|3RSY|A Chain A, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Sulfate And Glycerol
pdb|3RSY|B Chain B, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Sulfate And Glycerol
pdb|3S4A|A Chain A, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Cellobiose
pdb|3S4A|B Chain B, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Cellobiose
pdb|3S4B|A Chain A, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Glucose
pdb|3S4B|B Chain B, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Glucose
Length = 822
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 23/88 (26%)
Query: 330 RWIQLSAERGLLH------------RNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRS 377
++ +L+A RGL R+A++ W+ GS ++ D YG
Sbjct: 531 QYAELAARRGLADVADRARGHVAEMRDALLTDGWD-----------GSWFLRAYDYYGNP 579
Query: 378 VYDGEVRRGQIMVVPQNFAVVKRAGGAE 405
+ G+I + PQ FAV+ G E
Sbjct: 580 IGTDAHDEGKIWIEPQGFAVMAGVGVGE 607
>pdb|3S4C|A Chain A, Lactose Phosphorylase In Complex With Sulfate
pdb|3S4D|A Chain A, Lactose Phosphorylase In A Ternary Complex With Cellobiose
And Sulfate
Length = 822
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 23/88 (26%)
Query: 330 RWIQLSAERGLLH------------RNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRS 377
++ +L+A RGL R+A++ W+ GS ++ D YG
Sbjct: 531 QYAELAARRGLADVADRARGHVAEMRDALLTDGWD-----------GSWFLRAYDYYGNP 579
Query: 378 VYDGEVRRGQIMVVPQNFAVVKRAGGAE 405
+ G+I + PQ FAV+ G E
Sbjct: 580 IGTDAHDEGKIWIEPQGFAVMAGVGVGE 607
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS 365
S+ IY+ G + P LR + + ++ A+++PH+N A I+ G
Sbjct: 221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGD 280
Query: 366 CHVQVV 371
++++V
Sbjct: 281 ANIELV 286
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS 365
S+ IY+ G + P LR + + ++ A+++PH+N A I+ G
Sbjct: 221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGD 280
Query: 366 CHVQVV 371
++++V
Sbjct: 281 ANIELV 286
>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|D Chain D, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|E Chain E, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|F Chain F, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
Length = 416
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS 365
S+ IY+ G + P LR + + ++ A+++PH+N A I+ G
Sbjct: 221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGD 280
Query: 366 CHVQVV 371
++++V
Sbjct: 281 ANIELV 286
>pdb|3QDE|A Chain A, The Structure Of Cellobiose Phosphorylase From Clostridium
Thermocellum In Complex With Phosphate
pdb|3QDE|B Chain B, The Structure Of Cellobiose Phosphorylase From Clostridium
Thermocellum In Complex With Phosphate
Length = 811
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 331 WIQLSAERGLLHRNAMMVPHWNLNAHSIM-YAISGSCHVQVVDSYGRSVYDGEVRRGQIM 389
+++L GL H + +I+ Y G ++ D +GR V E G+I
Sbjct: 525 YVKLCEYMGLEEEARKAQQHIDAMKEAILKYGYDGEWFLRAYDDFGRKVGSKENEEGKIF 584
Query: 390 VVPQNFAVVKRAG 402
+ Q F V+ G
Sbjct: 585 IESQGFCVMAEIG 597
>pdb|1DGR|X Chain X, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|V Chain V, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|N Chain N, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGW|X Chain X, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
Length = 79
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS 365
S+ IY+ G + + LR + + ++ A+ VPH+N A I+ A G
Sbjct: 8 SRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGR 67
Query: 366 CHVQVV 371
V++V
Sbjct: 68 AEVELV 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,573,455
Number of Sequences: 62578
Number of extensions: 438166
Number of successful extensions: 752
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 66
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)