Query 046186
Match_columns 436
No_of_seqs 253 out of 1779
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00212 glutelin; Provisional 100.0 8E-110 2E-114 868.2 36.9 424 4-435 8-449 (493)
2 TIGR03404 bicupin_oxalic bicup 100.0 4.5E-41 9.7E-46 343.6 30.6 292 48-434 49-342 (367)
3 PF00190 Cupin_1: Cupin; Inte 99.9 2.1E-25 4.4E-30 199.9 13.8 141 36-235 1-143 (144)
4 PF00190 Cupin_1: Cupin; Inte 99.9 5.5E-22 1.2E-26 177.7 13.4 116 300-418 1-125 (144)
5 smart00835 Cupin_1 Cupin. This 99.9 3.2E-21 6.9E-26 173.2 16.3 142 40-235 2-145 (146)
6 PLN00212 glutelin; Provisional 99.8 1.4E-20 3.1E-25 197.7 16.2 162 29-245 306-472 (493)
7 TIGR03404 bicupin_oxalic bicup 99.8 3.1E-19 6.8E-24 183.0 15.5 145 35-242 217-363 (367)
8 smart00835 Cupin_1 Cupin. This 99.8 1.8E-18 3.9E-23 155.3 14.7 126 310-435 6-132 (146)
9 COG2140 Thermophilic glucose-6 99.7 1.6E-16 3.6E-21 149.1 14.1 161 220-417 2-165 (209)
10 PRK11171 hypothetical protein; 99.5 3.2E-12 7E-17 126.1 21.7 200 64-416 58-261 (266)
11 TIGR03214 ura-cupin putative a 99.5 1.3E-11 2.9E-16 121.4 23.8 197 65-416 56-256 (260)
12 COG2140 Thermophilic glucose-6 99.3 3.7E-11 8.1E-16 113.2 11.2 140 33-239 54-197 (209)
13 PF07883 Cupin_2: Cupin domain 99.1 4.8E-10 1E-14 87.3 9.4 69 71-171 2-71 (71)
14 COG1917 Uncharacterized conser 99.1 8.7E-10 1.9E-14 97.0 11.7 80 62-173 38-118 (131)
15 COG0662 {ManC} Mannose-6-phosp 99.1 1.6E-09 3.4E-14 95.4 12.1 80 64-175 33-113 (127)
16 TIGR02272 gentisate_1_2 gentis 99.1 2E-09 4.3E-14 109.2 14.0 79 66-175 80-158 (335)
17 PRK04190 glucose-6-phosphate i 98.9 1.1E-08 2.3E-13 96.4 13.1 87 328-415 62-157 (191)
18 PRK13290 ectC L-ectoine syntha 98.9 1.1E-08 2.4E-13 90.1 12.3 95 45-174 16-110 (125)
19 PRK04190 glucose-6-phosphate i 98.9 2.2E-08 4.8E-13 94.3 13.4 96 51-174 53-157 (191)
20 PF07883 Cupin_2: Cupin domain 98.9 9.2E-09 2E-13 80.0 8.7 69 338-412 2-71 (71)
21 COG3435 Gentisate 1,2-dioxygen 98.8 4.8E-08 1E-12 96.2 11.9 272 41-421 61-339 (351)
22 TIGR03214 ura-cupin putative a 98.8 6E-08 1.3E-12 95.5 12.1 77 66-174 178-255 (260)
23 COG3837 Uncharacterized conser 98.7 5.4E-08 1.2E-12 87.7 8.5 79 65-175 40-122 (161)
24 PF01050 MannoseP_isomer: Mann 98.6 6.8E-07 1.5E-11 81.3 12.5 88 45-170 47-135 (151)
25 PRK15460 cpsB mannose-1-phosph 98.6 3.4E-07 7.4E-12 97.4 12.2 77 64-172 382-459 (478)
26 TIGR01479 GMP_PMI mannose-1-ph 98.6 2.6E-07 5.6E-12 98.3 11.1 77 64-172 373-450 (468)
27 PRK13290 ectC L-ectoine syntha 98.6 7.3E-07 1.6E-11 78.6 11.5 80 333-418 34-113 (125)
28 PRK09943 DNA-binding transcrip 98.6 5E-07 1.1E-11 84.3 10.8 76 65-172 105-181 (185)
29 COG0662 {ManC} Mannose-6-phosp 98.6 6E-07 1.3E-11 79.1 10.6 80 333-418 35-115 (127)
30 PRK11171 hypothetical protein; 98.5 8.5E-07 1.8E-11 87.7 12.3 77 66-174 183-260 (266)
31 COG1917 Uncharacterized conser 98.4 2.5E-06 5.4E-11 75.0 10.0 79 330-414 39-118 (131)
32 PF06560 GPI: Glucose-6-phosph 98.2 1.4E-05 3E-10 74.8 11.7 87 329-415 45-147 (182)
33 COG4101 Predicted mannose-6-ph 98.2 7.2E-06 1.6E-10 70.9 8.7 81 63-172 42-123 (142)
34 TIGR01479 GMP_PMI mannose-1-ph 98.2 7.9E-06 1.7E-10 87.0 10.8 77 333-415 375-452 (468)
35 PF01050 MannoseP_isomer: Mann 98.2 1.1E-05 2.4E-10 73.4 10.0 89 314-415 50-139 (151)
36 COG4297 Uncharacterized protei 98.1 5.4E-06 1.2E-10 73.3 6.6 68 344-414 52-120 (163)
37 COG4101 Predicted mannose-6-ph 98.1 1.9E-05 4E-10 68.4 9.2 85 333-420 45-130 (142)
38 COG3837 Uncharacterized conser 98.0 1.9E-05 4.2E-10 71.4 8.5 85 325-417 35-123 (161)
39 PRK09943 DNA-binding transcrip 98.0 4.6E-05 1E-09 71.0 10.5 74 333-413 106-181 (185)
40 PRK15460 cpsB mannose-1-phosph 98.0 3.4E-05 7.4E-10 82.3 10.5 77 333-415 384-461 (478)
41 PF06560 GPI: Glucose-6-phosph 98.0 5.7E-05 1.2E-09 70.7 10.6 92 60-174 43-147 (182)
42 PF11699 CENP-C_C: Mif2/CENP-C 98.0 6.3E-05 1.4E-09 62.0 9.5 72 66-169 11-83 (85)
43 PF02041 Auxin_BP: Auxin bindi 98.0 7.7E-05 1.7E-09 67.0 10.6 84 66-172 43-127 (167)
44 PRK13264 3-hydroxyanthranilate 97.8 5.8E-05 1.3E-09 70.1 7.9 58 75-160 42-99 (177)
45 PF02311 AraC_binding: AraC-li 97.8 9.9E-05 2.1E-09 62.9 8.6 63 76-170 12-74 (136)
46 TIGR03037 anthran_nbaC 3-hydro 97.8 0.0001 2.2E-09 67.5 8.3 61 75-163 36-96 (159)
47 PF12973 Cupin_7: ChrR Cupin-l 97.7 0.00016 3.5E-09 59.8 8.1 66 65-168 22-87 (91)
48 PF03079 ARD: ARD/ARD' family; 97.7 0.00022 4.7E-09 65.4 9.1 66 79-172 84-150 (157)
49 PRK13264 3-hydroxyanthranilate 97.6 0.00034 7.3E-09 65.0 9.6 57 342-401 42-98 (177)
50 TIGR02451 anti_sig_ChrR anti-s 97.5 0.0002 4.4E-09 68.8 7.1 72 66-173 126-197 (215)
51 PF11699 CENP-C_C: Mif2/CENP-C 97.5 0.00053 1.1E-08 56.6 8.3 71 333-409 11-82 (85)
52 COG1791 Uncharacterized conser 97.5 0.00049 1.1E-08 63.2 8.5 68 79-173 87-154 (181)
53 TIGR03037 anthran_nbaC 3-hydro 97.5 0.00052 1.1E-08 62.8 8.7 51 349-401 41-92 (159)
54 PF02311 AraC_binding: AraC-li 97.4 0.00054 1.2E-08 58.3 7.8 66 343-415 12-78 (136)
55 COG4297 Uncharacterized protei 97.4 0.00035 7.5E-09 62.0 6.1 66 76-171 51-118 (163)
56 PRK15457 ethanolamine utilizat 97.4 0.0016 3.5E-08 62.8 10.9 69 333-412 156-225 (233)
57 PF05523 FdtA: WxcM-like, C-te 97.4 0.0027 6E-08 56.3 11.6 95 314-412 14-110 (131)
58 PF06339 Ectoine_synth: Ectoin 97.4 0.0019 4.2E-08 56.6 10.1 97 43-175 14-111 (126)
59 PRK10371 DNA-binding transcrip 97.3 0.00069 1.5E-08 68.0 8.0 66 67-164 26-91 (302)
60 PF03079 ARD: ARD/ARD' family; 97.3 0.0017 3.6E-08 59.6 9.6 69 345-415 83-152 (157)
61 PRK15457 ethanolamine utilizat 97.3 0.0023 4.9E-08 61.8 10.8 74 64-174 154-228 (233)
62 TIGR02272 gentisate_1_2 gentis 97.2 0.0014 2.9E-08 67.1 8.6 74 333-412 80-154 (335)
63 PF12973 Cupin_7: ChrR Cupin-l 97.1 0.0016 3.4E-08 53.8 7.1 64 333-408 23-86 (91)
64 PRK13501 transcriptional activ 97.1 0.0014 3E-08 64.9 7.5 56 75-162 26-81 (290)
65 PRK10296 DNA-binding transcrip 97.1 0.0024 5.1E-08 62.7 9.1 51 78-160 34-84 (278)
66 PRK13500 transcriptional activ 97.0 0.002 4.3E-08 64.8 8.1 55 76-162 57-111 (312)
67 PF02041 Auxin_BP: Auxin bindi 97.0 0.0069 1.5E-07 54.7 9.9 119 298-422 11-135 (167)
68 PF14499 DUF4437: Domain of un 96.9 0.0023 5E-08 62.9 7.2 209 65-411 34-243 (251)
69 PRK13503 transcriptional activ 96.8 0.0019 4.2E-08 63.0 6.0 55 75-161 23-77 (278)
70 PF05899 Cupin_3: Protein of u 96.8 0.0021 4.5E-08 51.4 5.0 57 334-398 7-63 (74)
71 PRK13502 transcriptional activ 96.8 0.0038 8.3E-08 61.3 7.7 58 73-162 24-81 (282)
72 PF05899 Cupin_3: Protein of u 96.8 0.006 1.3E-07 48.7 7.4 58 67-157 7-64 (74)
73 PRK13500 transcriptional activ 96.8 0.005 1.1E-07 61.9 8.4 56 342-404 56-111 (312)
74 PF06339 Ectoine_synth: Ectoin 96.7 0.014 3.1E-07 51.2 9.6 81 331-417 32-112 (126)
75 TIGR02297 HpaA 4-hydroxyphenyl 96.6 0.004 8.6E-08 61.2 6.6 61 76-168 32-93 (287)
76 COG1898 RfbC dTDP-4-dehydrorha 96.6 0.034 7.3E-07 51.8 12.0 71 343-413 54-132 (173)
77 PRK10371 DNA-binding transcrip 96.5 0.0063 1.4E-07 61.1 7.4 56 339-401 31-86 (302)
78 COG1791 Uncharacterized conser 96.5 0.016 3.4E-07 53.5 9.1 66 349-416 90-156 (181)
79 PF14499 DUF4437: Domain of un 96.5 0.0086 1.9E-07 58.9 7.9 72 333-410 35-107 (251)
80 PRK13502 transcriptional activ 96.5 0.0096 2.1E-07 58.4 8.2 57 340-403 24-80 (282)
81 PRK13501 transcriptional activ 96.5 0.0076 1.6E-07 59.7 7.3 49 346-401 30-78 (290)
82 TIGR01221 rmlC dTDP-4-dehydror 96.5 0.035 7.7E-07 51.8 11.3 72 342-413 52-132 (176)
83 PRK10296 DNA-binding transcrip 96.4 0.0094 2E-07 58.5 7.5 48 345-399 34-81 (278)
84 PF06052 3-HAO: 3-hydroxyanthr 96.4 0.019 4.1E-07 52.0 8.6 65 71-163 37-101 (151)
85 PF00908 dTDP_sugar_isom: dTDP 96.3 0.029 6.3E-07 52.4 9.8 73 342-414 51-133 (176)
86 TIGR02297 HpaA 4-hydroxyphenyl 96.3 0.009 1.9E-07 58.7 6.8 53 344-402 33-85 (287)
87 PRK15131 mannose-6-phosphate i 96.1 0.11 2.3E-06 54.4 13.8 44 354-403 338-381 (389)
88 TIGR02451 anti_sig_ChrR anti-s 96.0 0.026 5.6E-07 54.3 8.3 71 333-414 126-197 (215)
89 PF04209 HgmA: homogentisate 1 96.0 0.038 8.3E-07 58.1 9.9 48 341-398 316-364 (424)
90 COG3450 Predicted enzyme of th 96.0 0.017 3.7E-07 50.3 6.1 43 351-398 59-101 (116)
91 PF06249 EutQ: Ethanolamine ut 95.9 0.043 9.4E-07 50.0 8.8 71 66-173 76-147 (152)
92 PF06249 EutQ: Ethanolamine ut 95.9 0.038 8.2E-07 50.4 8.1 59 333-400 76-134 (152)
93 COG4766 EutQ Ethanolamine util 95.9 0.036 7.7E-07 50.3 7.6 68 333-409 99-167 (176)
94 PF13621 Cupin_8: Cupin-like d 95.8 0.06 1.3E-06 51.2 9.5 66 336-402 132-232 (251)
95 PF05523 FdtA: WxcM-like, C-te 95.7 0.14 3.1E-06 45.4 10.8 95 45-170 11-109 (131)
96 PRK13503 transcriptional activ 95.4 0.028 6.1E-07 54.8 6.0 54 342-402 23-76 (278)
97 COG3435 Gentisate 1,2-dioxygen 95.3 0.031 6.8E-07 55.9 5.7 104 33-172 229-333 (351)
98 TIGR00218 manA mannose-6-phosp 95.3 0.32 6.9E-06 49.0 13.1 45 353-403 251-295 (302)
99 PF08007 Cupin_4: Cupin superf 95.2 0.11 2.3E-06 52.8 9.6 74 334-408 113-205 (319)
100 PF06052 3-HAO: 3-hydroxyanthr 95.0 0.091 2E-06 47.6 7.4 55 342-399 41-95 (151)
101 COG3257 GlxB Uncharacterized p 94.9 0.14 2.9E-06 49.3 8.4 89 317-416 169-259 (264)
102 KOG2107 Uncharacterized conser 94.6 0.054 1.2E-06 49.7 4.8 55 345-401 84-138 (179)
103 PF00908 dTDP_sugar_isom: dTDP 94.6 0.29 6.3E-06 45.7 9.8 100 39-165 12-126 (176)
104 PF13621 Cupin_8: Cupin-like d 94.5 0.3 6.4E-06 46.4 10.0 92 69-164 132-236 (251)
105 COG3450 Predicted enzyme of th 94.3 0.1 2.2E-06 45.5 5.7 58 67-158 45-103 (116)
106 TIGR01221 rmlC dTDP-4-dehydror 94.2 0.55 1.2E-05 43.9 10.7 109 34-170 8-130 (176)
107 PF13759 2OG-FeII_Oxy_5: Putat 93.7 0.33 7.2E-06 40.6 7.7 73 339-411 5-100 (101)
108 COG1898 RfbC dTDP-4-dehydrorha 93.6 0.45 9.7E-06 44.4 9.0 104 36-169 11-130 (173)
109 COG4766 EutQ Ethanolamine util 93.6 0.55 1.2E-05 42.8 9.1 71 66-172 99-169 (176)
110 COG2850 Uncharacterized conser 92.9 0.12 2.6E-06 53.2 4.4 78 326-408 113-208 (383)
111 PF05118 Asp_Arg_Hydrox: Aspar 92.9 0.71 1.5E-05 42.4 9.1 82 66-174 79-160 (163)
112 PF12852 Cupin_6: Cupin 92.8 0.56 1.2E-05 43.3 8.5 46 87-162 35-80 (186)
113 KOG2107 Uncharacterized conser 92.8 0.15 3.2E-06 46.9 4.4 57 79-163 85-142 (179)
114 KOG3706 Uncharacterized conser 92.1 0.09 1.9E-06 55.6 2.3 67 334-401 316-403 (629)
115 PF08007 Cupin_4: Cupin superf 91.1 1.9 4.1E-05 43.8 10.6 83 69-161 115-200 (319)
116 PF05726 Pirin_C: Pirin C-term 90.9 2.1 4.6E-05 36.1 9.2 68 337-412 2-69 (104)
117 COG3257 GlxB Uncharacterized p 90.4 1.9 4.2E-05 41.6 9.2 77 334-416 61-139 (264)
118 PRK12335 tellurite resistance 90.2 1.1 2.3E-05 44.7 7.8 73 343-415 20-95 (287)
119 PRK10572 DNA-binding transcrip 90.0 0.96 2.1E-05 44.5 7.3 49 82-162 44-92 (290)
120 PF02373 JmjC: JmjC domain, hy 89.9 0.51 1.1E-05 39.5 4.6 26 138-163 82-107 (114)
121 TIGR02466 conserved hypothetic 89.9 0.96 2.1E-05 43.2 6.8 74 338-411 100-196 (201)
122 PF12852 Cupin_6: Cupin 89.7 1.2 2.6E-05 41.1 7.3 43 355-401 35-77 (186)
123 KOG2757 Mannose-6-phosphate is 89.3 1.7 3.6E-05 44.9 8.3 75 327-410 328-403 (411)
124 PRK05341 homogentisate 1,2-dio 88.4 3.1 6.6E-05 44.1 9.8 76 333-415 132-208 (438)
125 PRK05341 homogentisate 1,2-dio 87.7 2.9 6.4E-05 44.3 9.2 46 342-397 326-372 (438)
126 TIGR01015 hmgA homogentisate 1 86.3 3.8 8.3E-05 43.3 9.1 47 341-397 320-367 (429)
127 PF13464 DUF4115: Domain of un 86.0 5.2 0.00011 31.8 7.9 51 361-411 4-54 (77)
128 PF02678 Pirin: Pirin; InterP 85.8 4.1 9E-05 35.0 7.6 63 77-170 39-105 (107)
129 PF06172 Cupin_5: Cupin superf 85.7 12 0.00025 33.8 10.8 82 333-415 40-128 (139)
130 KOG2757 Mannose-6-phosphate is 84.7 3.8 8.2E-05 42.4 7.9 71 66-168 332-402 (411)
131 PRK15131 mannose-6-phosphate i 84.6 4.6 0.0001 42.4 8.9 59 66-158 320-378 (389)
132 PF06865 DUF1255: Protein of u 83.6 7.1 0.00015 32.9 7.8 71 334-412 23-93 (94)
133 PLN02658 homogentisate 1,2-dio 82.8 9.2 0.0002 40.6 10.1 75 333-414 125-200 (435)
134 PF05995 CDO_I: Cysteine dioxy 82.3 15 0.00032 34.1 10.3 77 333-409 74-159 (175)
135 PF13759 2OG-FeII_Oxy_5: Putat 82.2 7.3 0.00016 32.4 7.6 87 72-165 5-95 (101)
136 TIGR01015 hmgA homogentisate 1 82.1 9.9 0.00021 40.3 10.0 74 333-414 126-200 (429)
137 PF04209 HgmA: homogentisate 1 81.9 4.8 0.0001 42.6 7.7 64 344-414 134-198 (424)
138 PRK10579 hypothetical protein; 81.4 16 0.00035 30.8 9.1 69 336-412 25-93 (94)
139 PF05726 Pirin_C: Pirin C-term 81.1 6.7 0.00014 33.1 7.0 64 70-168 2-66 (104)
140 PLN02658 homogentisate 1,2-dio 80.8 8.9 0.00019 40.7 9.1 46 342-397 320-366 (435)
141 PRK13918 CRP/FNR family transc 79.7 7.6 0.00017 35.7 7.6 56 337-392 7-63 (202)
142 PRK14584 hmsS hemin storage sy 78.4 3.3 7.2E-05 37.9 4.5 45 216-260 96-146 (153)
143 KOG3706 Uncharacterized conser 78.3 1.5 3.4E-05 46.6 2.6 75 71-157 320-401 (629)
144 PF09313 DUF1971: Domain of un 78.2 15 0.00032 30.2 7.8 65 343-408 12-79 (82)
145 PRK10572 DNA-binding transcrip 78.0 5.9 0.00013 38.9 6.6 42 354-401 48-89 (290)
146 TIGR00218 manA mannose-6-phosp 77.4 11 0.00025 37.8 8.5 61 64-158 232-292 (302)
147 PRK09685 DNA-binding transcrip 77.3 11 0.00025 37.0 8.4 68 66-165 44-117 (302)
148 KOG3995 3-hydroxyanthranilate 77.0 4.2 9E-05 39.1 4.8 63 73-163 39-101 (279)
149 PF07385 DUF1498: Protein of u 75.7 19 0.00041 35.0 9.0 98 67-177 87-192 (225)
150 PF05995 CDO_I: Cysteine dioxy 75.5 34 0.00075 31.7 10.6 89 65-172 73-163 (175)
151 PF02678 Pirin: Pirin; InterP 75.5 13 0.00029 31.8 7.2 62 344-410 39-104 (107)
152 PLN02288 mannose-6-phosphate i 75.3 7.3 0.00016 41.0 6.6 59 66-154 333-391 (394)
153 PF00027 cNMP_binding: Cyclic 75.1 10 0.00023 29.3 6.2 37 355-391 17-53 (91)
154 COG2850 Uncharacterized conser 74.5 6.9 0.00015 40.6 6.0 85 60-163 114-205 (383)
155 COG1741 Pirin-related protein 74.3 7.5 0.00016 39.0 6.1 69 71-170 48-121 (276)
156 PLN02288 mannose-6-phosphate i 74.1 8.6 0.00019 40.5 6.8 59 333-396 333-391 (394)
157 COG5553 Predicted metal-depend 74.1 22 0.00048 33.0 8.5 75 67-163 73-147 (191)
158 PF02373 JmjC: JmjC domain, hy 70.7 10 0.00022 31.5 5.4 29 375-403 77-106 (114)
159 PRK09391 fixK transcriptional 70.6 32 0.0007 32.7 9.5 81 330-412 32-114 (230)
160 PRK11753 DNA-binding transcrip 69.9 18 0.00039 33.4 7.4 43 217-259 167-209 (211)
161 PRK11753 DNA-binding transcrip 68.6 47 0.001 30.6 9.9 74 337-412 21-100 (211)
162 TIGR02466 conserved hypothetic 67.7 20 0.00042 34.3 7.1 90 71-172 100-197 (201)
163 COG1741 Pirin-related protein 67.5 14 0.00031 37.0 6.4 73 338-415 48-125 (276)
164 COG3542 Uncharacterized conser 64.3 1.1E+02 0.0023 28.2 10.6 74 338-415 48-130 (162)
165 smart00100 cNMP Cyclic nucleot 64.1 38 0.00083 26.8 7.4 55 338-393 19-73 (120)
166 PF07847 DUF1637: Protein of u 64.0 31 0.00067 33.0 7.7 81 333-413 43-142 (200)
167 COG3508 HmgA Homogentisate 1,2 62.9 48 0.001 34.5 9.1 66 65-163 123-190 (427)
168 cd00038 CAP_ED effector domain 62.8 30 0.00064 27.4 6.5 56 337-393 18-73 (115)
169 PF14525 AraC_binding_2: AraC- 61.7 56 0.0012 28.6 8.6 33 136-168 72-104 (172)
170 PRK13918 CRP/FNR family transc 60.8 42 0.0009 30.7 7.9 43 217-259 148-190 (202)
171 PRK10402 DNA-binding transcrip 60.0 18 0.00038 34.4 5.4 52 340-392 35-86 (226)
172 PRK09685 DNA-binding transcrip 59.2 24 0.00051 34.8 6.3 63 333-401 44-111 (302)
173 COG1482 ManA Phosphomannose is 58.2 14 0.00031 37.7 4.5 39 368-409 149-187 (312)
174 PF06865 DUF1255: Protein of u 57.9 1.2E+02 0.0025 25.7 9.9 61 67-160 23-84 (94)
175 PF11142 DUF2917: Protein of u 56.7 62 0.0014 25.0 6.9 56 73-159 3-58 (63)
176 TIGR03697 NtcA_cyano global ni 56.3 22 0.00047 32.3 5.1 37 355-391 11-47 (193)
177 COG3822 ABC-type sugar transpo 55.6 62 0.0013 30.9 7.9 36 138-175 154-189 (225)
178 PF04962 KduI: KduI/IolB famil 55.5 1E+02 0.0022 30.6 10.0 88 316-415 12-109 (261)
179 PF08220 HTH_DeoR: DeoR-like h 55.3 11 0.00024 28.3 2.5 41 218-258 14-54 (57)
180 PF05118 Asp_Arg_Hydrox: Aspar 54.6 72 0.0016 29.1 8.2 67 335-405 81-151 (163)
181 PRK09391 fixK transcriptional 54.5 73 0.0016 30.3 8.7 167 64-258 33-220 (230)
182 COG3508 HmgA Homogentisate 1,2 53.8 1.1E+02 0.0025 31.9 10.0 61 333-400 124-185 (427)
183 PRK10579 hypothetical protein; 53.4 1.4E+02 0.003 25.3 9.3 59 69-160 25-84 (94)
184 PRK10402 DNA-binding transcrip 49.2 50 0.0011 31.2 6.5 41 219-259 170-210 (226)
185 KOG3995 3-hydroxyanthranilate 46.7 23 0.0005 34.2 3.7 47 351-399 48-95 (279)
186 COG3718 IolB Uncharacterized e 45.2 2.1E+02 0.0046 28.2 10.0 92 47-162 11-102 (270)
187 PF14525 AraC_binding_2: AraC- 44.6 1.8E+02 0.0038 25.3 9.0 52 356-414 56-107 (172)
188 PRK11161 fumarate/nitrate redu 43.8 46 0.001 31.3 5.4 52 339-391 40-91 (235)
189 COG1482 ManA Phosphomannose is 42.6 1.1E+02 0.0024 31.3 8.1 60 64-158 239-299 (312)
190 PF03971 IDH: Monomeric isocit 42.5 34 0.00073 37.8 4.5 35 357-391 420-454 (735)
191 COG0664 Crp cAMP-binding prote 42.4 49 0.0011 29.8 5.2 57 355-412 41-102 (214)
192 PF00027 cNMP_binding: Cyclic 39.8 68 0.0015 24.5 5.0 33 73-109 3-35 (91)
193 PF13640 2OG-FeII_Oxy_3: 2OG-F 39.6 1.2E+02 0.0026 24.4 6.7 62 338-399 3-83 (100)
194 PF10313 DUF2415: Uncharacteri 39.2 38 0.00082 24.5 2.9 31 344-374 1-33 (43)
195 PF11142 DUF2917: Protein of u 38.7 75 0.0016 24.5 4.9 56 340-401 3-58 (63)
196 PRK14585 pgaD putative PGA bio 38.4 26 0.00056 31.5 2.5 27 216-242 87-113 (137)
197 PF04962 KduI: KduI/IolB famil 38.2 1.4E+02 0.0031 29.6 8.0 75 65-162 25-99 (261)
198 PF13994 PgaD: PgaD-like prote 37.8 29 0.00063 30.9 2.8 25 219-243 101-125 (138)
199 COG3806 ChrR Transcriptional a 35.0 1.9E+02 0.004 27.9 7.7 71 66-172 127-197 (216)
200 PF13545 HTH_Crp_2: Crp-like h 34.2 30 0.00066 26.6 2.1 43 217-259 27-69 (76)
201 COG3123 Uncharacterized protei 33.3 80 0.0017 26.2 4.3 45 351-399 37-81 (94)
202 PRK04043 tolB translocation pr 32.5 2.5E+02 0.0055 29.6 9.2 48 341-388 364-414 (419)
203 PRK00364 groES co-chaperonin G 31.4 2.1E+02 0.0046 23.9 6.8 62 342-407 21-83 (95)
204 TIGR00178 monomer_idh isocitra 30.4 41 0.00089 37.2 2.9 36 356-391 423-458 (741)
205 PF00325 Crp: Bacterial regula 29.9 27 0.00058 23.6 0.9 30 219-248 3-32 (32)
206 smart00420 HTH_DEOR helix_turn 29.8 53 0.0012 22.8 2.6 37 218-254 14-50 (53)
207 PLN02868 acyl-CoA thioesterase 29.5 98 0.0021 32.4 5.5 37 355-392 49-85 (413)
208 PF02796 HTH_7: Helix-turn-hel 29.5 57 0.0012 23.1 2.6 25 217-241 20-44 (45)
209 PRK00924 5-keto-4-deoxyuronate 28.6 1.9E+02 0.0041 29.1 7.0 75 333-408 174-253 (276)
210 cd00038 CAP_ED effector domain 28.2 1.6E+02 0.0034 23.0 5.5 35 69-107 17-51 (115)
211 PHA02951 Hypothetical protein; 27.6 1.4E+02 0.003 30.5 5.8 44 355-399 124-167 (337)
212 smart00345 HTH_GNTR helix_turn 27.3 58 0.0013 23.3 2.5 33 220-252 22-54 (60)
213 PF09012 FeoC: FeoC like trans 26.7 32 0.0007 26.6 1.0 35 218-252 14-48 (69)
214 PHA02984 hypothetical protein; 26.1 3.4E+02 0.0073 27.3 8.1 51 357-409 95-145 (286)
215 COG0853 PanD Aspartate 1-decar 26.0 39 0.00085 29.8 1.5 38 355-394 52-89 (126)
216 PF13384 HTH_23: Homeodomain-l 25.7 64 0.0014 22.8 2.4 30 217-246 16-45 (50)
217 PRK05467 Fe(II)-dependent oxyg 25.6 1.6E+02 0.0035 28.6 5.8 31 382-412 144-174 (226)
218 PF06251 Caps_synth_GfcC: Caps 25.0 65 0.0014 31.0 3.0 36 357-393 167-203 (229)
219 smart00100 cNMP Cyclic nucleot 24.3 2.9E+02 0.0063 21.5 6.4 55 71-151 19-73 (120)
220 COG3123 Uncharacterized protei 24.1 2.5E+02 0.0055 23.4 5.7 41 87-157 41-81 (94)
221 KOG2130 Phosphatidylserine-spe 23.8 83 0.0018 32.4 3.5 80 315-399 190-283 (407)
222 PF06413 Neugrin: Neugrin; In 22.3 75 0.0016 31.0 2.8 25 218-242 29-53 (225)
223 PF08139 LPAM_1: Prokaryotic m 22.2 46 0.001 21.3 0.9 17 2-18 8-24 (25)
224 PRK00924 5-keto-4-deoxyuronate 21.8 3.4E+02 0.0074 27.3 7.4 82 63-171 171-257 (276)
225 PRK10856 cytoskeletal protein 21.6 2.7E+02 0.0058 28.6 6.8 60 356-417 252-311 (331)
226 cd06919 Asp_decarbox Aspartate 21.1 60 0.0013 28.2 1.7 36 357-394 54-89 (111)
227 PF14326 DUF4384: Domain of un 20.6 4.4E+02 0.0095 20.9 6.8 61 355-416 19-81 (83)
228 PRK11396 hypothetical protein; 20.6 6.8E+02 0.015 23.8 8.8 89 41-161 10-99 (191)
229 PF06172 Cupin_5: Cupin superf 20.5 6.2E+02 0.013 22.6 11.8 99 48-169 15-123 (139)
230 TIGR03028 EpsE polysaccharide 20.4 46 0.001 32.3 0.9 55 333-395 182-238 (239)
231 PF04115 Ureidogly_hydro: Urei 20.3 5.3E+02 0.011 23.6 7.9 67 348-414 73-146 (165)
232 smart00419 HTH_CRP helix_turn_ 20.3 1.2E+02 0.0026 20.7 2.9 35 218-252 8-42 (48)
233 KOG3416 Predicted nucleic acid 20.0 3.8E+02 0.0082 24.0 6.4 61 327-397 12-76 (134)
No 1
>PLN00212 glutelin; Provisional
Probab=100.00 E-value=7.7e-110 Score=868.23 Aligned_cols=424 Identities=44% Similarity=0.758 Sum_probs=374.7
Q ss_pred hhhHHHHHHHhcccccccc-------cc-cc--CCCCCccccccccCCCceeecCCcEEEEeCCCCccccccceEEEEEE
Q 046186 4 TCSLLNLVILFRGCLAANQ-------QQ-WQ--QPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHT 73 (436)
Q Consensus 4 ~~~~l~~~~l~~~~~a~~~-------~~-~~--~~~~C~~~~l~a~eP~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~ 73 (436)
|+|+|||||||++|+|+.. ++ ++ + ++|++++|+|+||+++|+||||++|+||+++++|+|+|++++|++
T Consensus 8 l~~~~~~l~l~~~~~a~~~~~~~~~~~~~~~~~~-~~C~~~~l~a~ep~~ri~se~G~~E~~~~~~~q~~caGv~~~R~~ 86 (493)
T PLN00212 8 LSICFCVLLLCHGSMAQLFSQSTNPWQSPRQGSF-RECRFDRLQAFEPLRKVRSEAGVTEYFDEKNEQFQCTGVFVIRRV 86 (493)
T ss_pred HHHHHHHHHHHhhHhhhhcccccccccccccccC-CcccccccccCCCchhhcccCceeeecCCCChhhcccceEEEEEE
Confidence 5678999999999999531 11 12 5 899999999999999999999999999999999999999999999
Q ss_pred ecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCC--CCCccCCcccccccceeeeeccCcEEEeCC
Q 046186 74 IRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQG--GFGESAGRSQQDSHQKIRRFRQGDIFALPA 151 (436)
Q Consensus 74 i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~--~~~~~~~~~~~d~~~k~~~l~~GDv~~iPa 151 (436)
|+|+||++||||++++++||++| +|++|+|+|||||||++.+++ .+++++++++.|.|||+++|++||||+||+
T Consensus 87 i~p~gL~lP~y~na~~liyV~qG----~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPa 162 (493)
T PLN00212 87 IEPQGLLLPRYSNTPGLVYIIQG----RGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPA 162 (493)
T ss_pred ecCCcccCccccCCCeEEEEEeC----eEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECC
Confidence 99999999999999999999999 999999999999999876553 123335677889999999999999999999
Q ss_pred CCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCC
Q 046186 152 GVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVD 231 (436)
Q Consensus 152 G~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~ 231 (436)
|++||+||+||+++++|+++|++|+.||||+.++.|||||+++++++++++ ++++..+.|||+||++++||+||||+
T Consensus 163 G~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~---~~~~~~~~nifsGF~~e~La~Afnv~ 239 (493)
T PLN00212 163 GVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGR---SIEQHSGQNIFSGFSTELLSEALGIN 239 (493)
T ss_pred CCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccc---cccccccCchhhcCCHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999998653332111 11122368999999999999999999
Q ss_pred HHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccc------hhhhhhcccccCCCCCCcccceeeecccccCCC
Q 046186 232 ERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEED------SSEYERSRGRYGGDNGVEETMCTMKLRENIGDP 305 (436)
Q Consensus 232 ~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~------~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~ 305 (436)
.++++||++++|+||.||+|++++++++|+...++++.++. +.++.+++...+..||+||++|+||+++||++|
T Consensus 240 ~e~~~klq~~~d~rG~IVrv~~~l~~~~P~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ngleEt~c~~rlr~Ni~~p 319 (493)
T PLN00212 240 AQVAKRLQSQNDQRGEIIRVKNGLQLLQPTLTQQQEQAQQQQQRLYQQVQYQQSQQTSGRWNGLDENFCTIKVRLNIENP 319 (493)
T ss_pred HHHHHHHhccccCCccEEEECCCcccCCCchhhhhHHHHhhhhcccccchhhhccccccCCCCccccccccccccccCCc
Confidence 99999999999999999999999999999754322111110 111111122234569999999999999999999
Q ss_pred CCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecC
Q 046186 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRR 385 (436)
Q Consensus 306 ~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~ 385 (436)
+++|+|+|.+|+++++++.+||+|++|+||+++++|++|||++|||||||++|+||++|+|+|+||+++|+++|+++|++
T Consensus 320 ~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~ 399 (493)
T PLN00212 320 SRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRP 399 (493)
T ss_pred cccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCCccccccccccccccCCC
Q 046186 386 GQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRR 435 (436)
Q Consensus 386 Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~e 435 (436)
|||||||+||+|++.|++++|+|++|++++++..++|||++|||++||.|
T Consensus 400 GdvfVVPqg~~v~~~A~~egfe~v~F~tna~~~~s~laG~~Sv~~alp~e 449 (493)
T PLN00212 400 GQLLIIPQHYAVLKKAEREGCQYIAFKTNANAMVSHIAGKNSIFRALPVD 449 (493)
T ss_pred CCEEEECCCCeEEEeecCCceEEEEeecCCCccccccccHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999999999964
No 2
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=100.00 E-value=4.5e-41 Score=343.57 Aligned_cols=292 Identities=17% Similarity=0.203 Sum_probs=227.8
Q ss_pred CCcEEEEeC-CCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCcc
Q 046186 48 EAGVVETWD-PGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGES 126 (436)
Q Consensus 48 e~G~~e~~~-~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~ 126 (436)
++|.+...+ .++|.++. +++++++|.||++..||||.+.|++||++| +.++++++++.
T Consensus 49 ~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G----~~~v~~~d~~g--------------- 107 (367)
T TIGR03404 49 NGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHKEAEWAYVLYG----SCRITAVDENG--------------- 107 (367)
T ss_pred cCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCCCceEEEEEee----EEEEEEEcCCC---------------
Confidence 688776655 56798865 799999999999999999998899999999 99999986420
Q ss_pred CCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhc
Q 046186 127 AGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERF 206 (436)
Q Consensus 127 ~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~ 206 (436)
......|++||+++||+|.+|++.|.+ +++.++++|+.++...+ ..+.+
T Consensus 108 --------~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~-----~~~~~----------------- 156 (367)
T TIGR03404 108 --------RNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSED-----GTFLV----------------- 156 (367)
T ss_pred --------cEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCc-----ceeeH-----------------
Confidence 111347999999999999999999985 56788888987664321 24444
Q ss_pred ccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCC
Q 046186 207 GGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGD 286 (436)
Q Consensus 207 ~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (436)
.++|..+|++||+++|+++.+++++|+..+. +|+...- |.... ++.. . ..
T Consensus 157 ------~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~~---~~~~~~~------~~~~~---------~~~~--~----~~ 206 (367)
T TIGR03404 157 ------TDWLAHTPKDVLAKNFGVPESAFDNLPLKEL---YIFPGTV------PGPLD---------QEAV--T----GP 206 (367)
T ss_pred ------HHHHHhCCHHHHHHHhCCCHHHHHhccccCc---eEEecCC------CCccc---------cccC--c----CC
Confidence 3678789999999999999999999998776 7875421 21111 0000 0 01
Q ss_pred CCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeE
Q 046186 287 NGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSC 366 (436)
Q Consensus 287 ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~g 366 (436)
.|.- ...+++++.+ .++ +...+|+++.+++.+||+++ ++|++.++|.||+|++||||++++||.||++|++
T Consensus 207 ~~~~----~~~~~~~~~~--~~p-~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~ 277 (367)
T TIGR03404 207 AGEV----PGPFTYHLSE--QKP-KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQA 277 (367)
T ss_pred CCCC----CccEEEEhhh--CCc-eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEE
Confidence 2211 1123455553 333 66789999999999999999 8999999999999999999999999999999999
Q ss_pred EEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCCCCccccccccccccccCC
Q 046186 367 HVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGR 434 (436)
Q Consensus 367 rv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~ 434 (436)
+++|++++|+. ...+|++||+++||+|++|++ |.|+++++||++++++.+...-|+ ..+..+|.
T Consensus 278 ~~~v~d~~g~~-~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~---~~l~~~p~ 342 (367)
T TIGR03404 278 RMTVFAAGGNA-RTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLN---QWLALTPP 342 (367)
T ss_pred EEEEEecCCcE-EEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHH---HHHhhCCH
Confidence 99999998763 345599999999999999987 899999999999999877544443 55555654
No 3
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.93 E-value=2.1e-25 Score=199.89 Aligned_cols=141 Identities=33% Similarity=0.593 Sum_probs=117.8
Q ss_pred ccccCCCceeecCCcEEEEeCC-CCc-cccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCC
Q 046186 36 LEALEPNNRVECEAGVVETWDP-GHE-QFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPE 113 (436)
Q Consensus 36 l~a~eP~~~~~se~G~~e~~~~-~~p-~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~e 113 (436)
+++.+|..++++++|.++.|+. ++| .+.+.++++.+.+|+||+|++||||++++|+||++| +|+++++.|+|+.
T Consensus 1 fn~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G----~~~~~~v~~~~~~ 76 (144)
T PF00190_consen 1 FNLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYHNADEIVYVIEG----RGRVGVVGPGGPQ 76 (144)
T ss_dssp EETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEESSEEEEEEEES----EEEEEEEETTCSS
T ss_pred CCCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEeeeeEEeeeecc----ceEEEEEecCCcc
Confidence 4788999999999999999996 467 566778999999999999999999999999999999 9999999997642
Q ss_pred cccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCC
Q 046186 114 TYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNP 193 (436)
Q Consensus 114 t~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~ 193 (436)
.+..+.++++ +|++|||++||+|++||++|.+|++...+.+|+++++.|
T Consensus 77 ---------------~~~~~~~~~v-~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~--------------- 125 (144)
T PF00190_consen 77 ---------------EEFRDFSQKV-RLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPN--------------- 125 (144)
T ss_dssp ---------------SEEEEEEEEE-EEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTG---------------
T ss_pred ---------------ccceeeecee-eeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcc---------------
Confidence 1112234556 799999999999999999999977788888888877643
Q ss_pred hhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHH
Q 046186 194 HQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLV 235 (436)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v 235 (436)
. +|+++|+++|+++.+++
T Consensus 126 ---------------------~---l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 126 ---------------------Q---LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp ---------------------E---SSHHHHHHHEESSHHHH
T ss_pred ---------------------c---CCcHHHHHhcCCCcCcC
Confidence 1 89999999999998875
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.88 E-value=5.5e-22 Score=177.70 Aligned_cols=116 Identities=26% Similarity=0.405 Sum_probs=94.9
Q ss_pred cccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEE-EEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC--
Q 046186 300 ENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAER-GLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR-- 376 (436)
Q Consensus 300 ~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~-v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~-- 376 (436)
+|+.+ ..+++++.+|+++.+++.+||+|..+...+.. +.|+||||++|||| +|++|.||++|+++++++++++.
T Consensus 1 fn~~~--~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~ 77 (144)
T PF00190_consen 1 FNLRE--PRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQE 77 (144)
T ss_dssp EETCS--SSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSS
T ss_pred CCCCC--CCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccc
Confidence 46664 34478999999999999999987766666555 55599999999999 99999999999999999999862
Q ss_pred --eEEEEE--ecCccEEEEcCCCEEEE-EeC-CCcEEEEEEEecCCCC
Q 046186 377 --SVYDGE--VRRGQIMVVPQNFAVVK-RAG-GAEFEWISFKTNDNAM 418 (436)
Q Consensus 377 --~~~~~~--l~~Gdv~vVP~g~~h~~-~ag-~e~~~~l~f~~s~~p~ 418 (436)
+.+..+ |++||||+||+|++|++ |.+ ++.+.++.|.+++.+.
T Consensus 78 ~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~ 125 (144)
T PF00190_consen 78 EFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPN 125 (144)
T ss_dssp EEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTG
T ss_pred cceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcc
Confidence 455665 99999999999999999 455 5778888888887754
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.87 E-value=3.2e-21 Score=173.16 Aligned_cols=142 Identities=29% Similarity=0.538 Sum_probs=122.6
Q ss_pred CCCceeecCCcEEEEeCCC-CccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccC
Q 046186 40 EPNNRVECEAGVVETWDPG-HEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQS 117 (436)
Q Consensus 40 eP~~~~~se~G~~e~~~~~-~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~ 117 (436)
+|.+.+++++|.+++|+.. .|.+++.++.+.+++|.||+...||||+ +.+++||++| ++.+.+..+++.
T Consensus 2 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G----~~~~~~~~~~~~----- 72 (146)
T smart00835 2 EPRPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRG----EGRVGVVDPNGN----- 72 (146)
T ss_pred CccccccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeC----eEEEEEEeCCCC-----
Confidence 3445699999999999974 5999999999999999999999999997 8999999999 999987654221
Q ss_pred CCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhh
Q 046186 118 PQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEF 197 (436)
Q Consensus 118 ~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~ 197 (436)
.+..+.+++||+++||+|++||+.|.+++++++++ +++.++. +.||++|.
T Consensus 73 -----------------~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~-~~~~~~~-------~~~~~~~~----- 122 (146)
T smart00835 73 -----------------KVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVA-FNTNDPN-------RRFFLAGR----- 122 (146)
T ss_pred -----------------eEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEE-EecCCCC-------ceeEeecc-----
Confidence 23468999999999999999999999999999985 6655542 46888886
Q ss_pred hHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHH
Q 046186 198 QQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLV 235 (436)
Q Consensus 198 ~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v 235 (436)
+++|++|++++|+++|+++++++
T Consensus 123 ---------------~~~~~~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 123 ---------------NSVLRGLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ---------------cchhhcCCHHHHHHHhCcChHHc
Confidence 69999999999999999999876
No 6
>PLN00212 glutelin; Provisional
Probab=99.85 E-value=1.4e-20 Score=197.71 Aligned_cols=162 Identities=20% Similarity=0.302 Sum_probs=133.8
Q ss_pred CCCccc-cccccCCC--ceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEE
Q 046186 29 NDCQIN-NLEALEPN--NRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGS 103 (436)
Q Consensus 29 ~~C~~~-~l~a~eP~--~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~ 103 (436)
+.|.++ +.+..+|. ..+...+|.+...+. ++|.|+..++++.++.|.||||++||||+ |++++||++| +|+
T Consensus 306 t~c~~rlr~Ni~~p~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG----~g~ 381 (493)
T PLN00212 306 NFCTIKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQG----RAR 381 (493)
T ss_pred cccccccccccCCccccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeec----ceE
Confidence 569887 66666665 578899999877764 78999999999999999999999999998 9999999999 999
Q ss_pred EEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCC
Q 046186 104 HGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRN 183 (436)
Q Consensus 104 ~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~ 183 (436)
+++|++.. .+. -..+|++||||+||+|++|.... +++.+.+++ |.++...
T Consensus 382 vqvV~~~g-----------------~~v-----f~~~L~~GdvfVVPqg~~v~~~A-~~egfe~v~-F~tna~~------ 431 (493)
T PLN00212 382 VQVVSNNG-----------------KTV-----FNGVLRPGQLLIIPQHYAVLKKA-EREGCQYIA-FKTNANA------ 431 (493)
T ss_pred EEEEcCCC-----------------CEE-----EEEEEcCCCEEEECCCCeEEEee-cCCceEEEE-eecCCCc------
Confidence 99997631 111 13699999999999999998765 467788887 4444422
Q ss_pred CceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCc
Q 046186 184 PRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYR 245 (436)
Q Consensus 184 ~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~r 245 (436)
...+|||. .++|+++|.+||++||+++++++++|+.++.+.
T Consensus 432 -~~s~laG~--------------------~Sv~~alp~eVla~Af~is~eea~~lk~n~~~e 472 (493)
T PLN00212 432 -MVSHIAGK--------------------NSIFRALPVDVIANAYRISREEARRLKNNRGDE 472 (493)
T ss_pred -cccccccH--------------------HHHHHhCCHHHHHHHcCCCHHHHHHHHhcccCc
Confidence 24567887 799999999999999999999999999876433
No 7
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.81 E-value=3.1e-19 Score=182.96 Aligned_cols=145 Identities=17% Similarity=0.293 Sum_probs=123.5
Q ss_pred cccccCCCceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCC
Q 046186 35 NLEALEPNNRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYP 112 (436)
Q Consensus 35 ~l~a~eP~~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~ 112 (436)
++...+| +.+.+|.++..+. ++|.++ ++++++++|+||++..||||+ ++||+||++| +++++++++.
T Consensus 217 ~~~~~~p---~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G----~~~~~v~d~~-- 285 (367)
T TIGR03404 217 HLSEQKP---KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQG----QARMTVFAAG-- 285 (367)
T ss_pred EhhhCCc---eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEE----EEEEEEEecC--
Confidence 4555555 6678999998885 577654 599999999999999999999 9999999999 9999987652
Q ss_pred CcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCC
Q 046186 113 ETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGN 192 (436)
Q Consensus 113 et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~ 192 (436)
...++..|++||+++||+|..|++.|.|+++++++++|++..+. .+-|
T Consensus 286 ---------------------g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~--------~i~l--- 333 (367)
T TIGR03404 286 ---------------------GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFA--------DVSL--- 333 (367)
T ss_pred ---------------------CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCc--------eeEH---
Confidence 12346899999999999999999999999999999999875543 3334
Q ss_pred ChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcC
Q 046186 193 PHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEK 242 (436)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~ 242 (436)
.+||+.+|++||+++|+++.+++++|++.+
T Consensus 334 --------------------~~~l~~~p~~vl~~~~~~~~~~~~~l~~~~ 363 (367)
T TIGR03404 334 --------------------NQWLALTPPQLVAAHLNLDDEVIDSLKKEK 363 (367)
T ss_pred --------------------HHHHhhCCHHHHHHHhCcCHHHHHhccccC
Confidence 489999999999999999999999998654
No 8
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.79 E-value=1.8e-18 Score=155.28 Aligned_cols=126 Identities=33% Similarity=0.580 Sum_probs=115.5
Q ss_pred cccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEE
Q 046186 310 IYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIM 389 (436)
Q Consensus 310 ~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~ 389 (436)
++++.+|+++.+++.++|.++..++++..+.+.||++..||||+++.|+.||++|++.+.+.+..|+......+++||++
T Consensus 6 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~ 85 (146)
T smart00835 6 DFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVF 85 (146)
T ss_pred cccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEE
Confidence 58999999999999999999999999999999999999999999999999999999999999987777788889999999
Q ss_pred EEcCCCEEEE-EeCCCcEEEEEEEecCCCCccccccccccccccCCC
Q 046186 390 VVPQNFAVVK-RAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRR 435 (436)
Q Consensus 390 vVP~g~~h~~-~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~e 435 (436)
+||++.+|.. +.+++++.+++|.+.+.+...+++|..+++.+|+.+
T Consensus 86 ~ip~g~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (146)
T smart00835 86 VVPQGHPHFQVNSGDENLEFVAFNTNDPNRRFFLAGRNSVLRGLPPE 132 (146)
T ss_pred EECCCCEEEEEcCCCCCEEEEEEecCCCCceeEeecccchhhcCCHH
Confidence 9999999987 677899999988776655677899999999999853
No 9
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.70 E-value=1.6e-16 Score=149.07 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=121.6
Q ss_pred CHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecc
Q 046186 220 DTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLR 299 (436)
Q Consensus 220 ~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~ 299 (436)
+..++++.|+++.++++.+..++. +|.+-+.. .+-.. +++..+. .+-.|. -+.
T Consensus 2 ~~~~~~~~~~vd~~~~~~~p~~~~---~i~~~~~~----~~l~~-------d~~~~~~---------~~~~~~----~~~ 54 (209)
T COG2140 2 PKLFEPKNFGVDVRTGKLLPLKQV---YIKRGSDP----GGLYA-------DEDAYSM---------LRKKED----DFV 54 (209)
T ss_pred CceeccccccchhhhhhcCCccce---eEEeccCC----ccccc-------CHHHHHH---------hcCCCC----ceE
Confidence 456788999999999988887765 67665421 11100 0111111 110111 234
Q ss_pred cccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcE--EEEEEeeeEEEEEEeCCCCe
Q 046186 300 ENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHS--IMYAISGSCHVQVVDSYGRS 377 (436)
Q Consensus 300 ~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~e--i~yV~~G~grv~vv~~~G~~ 377 (436)
|.+.. ..+.++ +|.+....+..+|.. +...+.+++|+|++.||||+|+| |.||++|+|++.+.+++|+.
T Consensus 55 yel~~--~~~~~~--~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~ 125 (209)
T COG2140 55 YELLE--SEPGER--GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEA 125 (209)
T ss_pred EEeec--cccccc--CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcE
Confidence 55553 333333 999999999999977 67889999999999999999999 99999999999999999884
Q ss_pred EEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCCC
Q 046186 378 VYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDNA 417 (436)
Q Consensus 378 ~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~p 417 (436)
....+++||++|||.+|.|++ |+|+++|.|+..+..+..
T Consensus 126 -~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~ 165 (209)
T COG2140 126 -RVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAG 165 (209)
T ss_pred -EEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCC
Confidence 556699999999999999997 999999999998877764
No 10
>PRK11171 hypothetical protein; Provisional
Probab=99.50 E-value=3.2e-12 Score=126.08 Aligned_cols=200 Identities=13% Similarity=0.118 Sum_probs=134.9
Q ss_pred ccceEEEEEEecCCceecCeeec--CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186 64 CAGVAVVRHTIRQKGLLLPQFSN--SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF 141 (436)
Q Consensus 64 ~~gv~~~r~~i~pg~l~~Ph~h~--a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l 141 (436)
..++.+.+++|.||+-...|+|. ..|++||++| ++.+.+ ..+.+.|
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG----~l~v~~----------------------------~g~~~~L 105 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEG----EITLTL----------------------------EGKTHAL 105 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeC----EEEEEE----------------------------CCEEEEE
Confidence 46789999999999976666664 5899999999 888874 1347899
Q ss_pred ccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCH
Q 046186 142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDT 221 (436)
Q Consensus 142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~ 221 (436)
++||.+++|++.+|.+.|.++++++++++.....+. .+.. .|
T Consensus 106 ~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~~y~~~-----------------------------------~~~~--~p- 147 (266)
T PRK11171 106 SEGGYAYLPPGSDWTLRNAGAEDARFHWIRKRYEPV-----------------------------------EGHE--AP- 147 (266)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEEEEcCCeEc-----------------------------------CCCC--CC-
Confidence 999999999999999999999999998875432211 0110 01
Q ss_pred HHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccc
Q 046186 222 RILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLREN 301 (436)
Q Consensus 222 ~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~N 301 (436)
+ .|+.-..++. +... . ...|. . .+. ..
T Consensus 148 ---------------------~---~~~~~~~d~~---~~~~----------------~----g~~g~---~--~~~-~~ 174 (266)
T PRK11171 148 ---------------------E---AFVGNESDIE---PIPM----------------P----GTDGV---W--ATT-RL 174 (266)
T ss_pred ---------------------C---eEecchhccc---cccc----------------C----CCCCe---E--EEE-Ee
Confidence 0 1211111110 0000 0 00110 0 000 01
Q ss_pred cCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceeccc-ccCCCcEEEEEEeeeEEEEEEeCCCCeEEE
Q 046186 302 IGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPH-WNLNAHSIMYAISGSCHVQVVDSYGRSVYD 380 (436)
Q Consensus 302 i~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PH-wh~~A~ei~yV~~G~grv~vv~~~G~~~~~ 380 (436)
|. +.+. ..++.+..+.|.||+-...| +| ...|.+||++|++.+.+ + |+ .
T Consensus 175 ~~-------------------p~~~----~~~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~-~--~~---~ 224 (266)
T PRK11171 175 VD-------------------PEDL----RFDMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRL-N--ND---W 224 (266)
T ss_pred eC-------------------chhc----CCCcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEE-C--CE---E
Confidence 11 1110 12467788999999999985 55 45599999999999975 2 22 3
Q ss_pred EEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCC
Q 046186 381 GEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDN 416 (436)
Q Consensus 381 ~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~ 416 (436)
..|.+||++++|.+-+|.. |.|++.+.|+.++.-.+
T Consensus 225 ~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~nr 261 (266)
T PRK11171 225 VEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKDVNR 261 (266)
T ss_pred EEeCCCCEEEECCCCCEEEECCCCCcEEEEEEccccc
Confidence 4599999999999999987 88999999999985443
No 11
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.47 E-value=1.3e-11 Score=121.36 Aligned_cols=197 Identities=12% Similarity=0.112 Sum_probs=131.4
Q ss_pred cceEEEEEEecCCce-ecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186 65 AGVAVVRHTIRQKGL-LLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR 142 (436)
Q Consensus 65 ~gv~~~r~~i~pg~l-~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~ 142 (436)
..+.+..+++.||+- ..+++|+ ..+++||++| +..+.+ ..+.+.|+
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G----~l~v~~----------------------------~g~~~~L~ 103 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISG----EVNVTA----------------------------EGETHELR 103 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeC----EEEEEE----------------------------CCEEEEEC
Confidence 578999999999875 4566676 4899999999 888764 13468999
Q ss_pred cCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHH
Q 046186 143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTR 222 (436)
Q Consensus 143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~ 222 (436)
+||.+++|+|.+|.+.|.++++++++++-....+. .++ .
T Consensus 104 ~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k~y~~~-----------------------------------~g~---~--- 142 (260)
T TIGR03214 104 EGGYAYLPPGSKWTLANAQAEDARFFLYKKRYQPV-----------------------------------EGL---H--- 142 (260)
T ss_pred CCCEEEECCCCCEEEEECCCCCEEEEEEEeeeEEc-----------------------------------CCC---C---
Confidence 99999999999999999999999988754322110 111 0
Q ss_pred HHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeeccccc
Q 046186 223 ILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENI 302 (436)
Q Consensus 223 vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni 302 (436)
..+ .|+.-..++ .+.. . .|
T Consensus 143 ------------------~~~---~vvg~~~dv---~~~~-----------------~------~g-------------- 161 (260)
T TIGR03214 143 ------------------APE---LVVGNEKDI---EPEP-----------------Y------EG-------------- 161 (260)
T ss_pred ------------------CCC---eeecCHHHC---Cccc-----------------c------CC--------------
Confidence 000 111100010 0000 0 00
Q ss_pred CCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecc-cccCCCcEEEEEEeeeEEEEEEeCCCCeEEEE
Q 046186 303 GDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVP-HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDG 381 (436)
Q Consensus 303 ~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~P-Hwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~ 381 (436)
..+.+++.+-++++. . ++.+..+.|.||+-... |.|... +..||++|+|.+.+ +|+ ..
T Consensus 162 ----------~~~~~~~~llp~~~~---~-~~~~~~~~~~PG~~~~~~~~H~~e-h~~yiL~G~G~~~~---~g~---~~ 220 (260)
T TIGR03214 162 ----------MDDVILTTLLPKELA---F-DMNVHILSFEPGASHPYIETHVME-HGLYVLEGKGVYNL---DNN---WV 220 (260)
T ss_pred ----------CCcEEEEEeCchhcC---C-CcEEEEEEECCCcccCCcccccce-eEEEEEeceEEEEE---CCE---EE
Confidence 001111111111111 1 56777799999999985 677644 55699999999964 233 24
Q ss_pred EecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCC
Q 046186 382 EVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDN 416 (436)
Q Consensus 382 ~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~ 416 (436)
.|.+||+++||.+.+|+. |.|+++|.||..+.--+
T Consensus 221 ~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd~nr 256 (260)
T TIGR03214 221 PVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKDMNR 256 (260)
T ss_pred EecCCCEEEECCCCCEEEEecCCCcEEEEEEccccC
Confidence 599999999999999998 88899999999985433
No 12
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.26 E-value=3.7e-11 Score=113.16 Aligned_cols=140 Identities=18% Similarity=0.284 Sum_probs=107.0
Q ss_pred cccccccCCCceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCc--eEEEEecccceEEEEEeeC
Q 046186 33 INNLEALEPNNRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQ--LVYILQAYTYRRGSHGDPF 108 (436)
Q Consensus 33 ~~~l~a~eP~~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~e--i~yV~~G~~~~~g~~g~v~ 108 (436)
.+.|...+|..+ +|.+...+. .+|.- +...+.++||++...|||+ ++| |+||++| +|.+-+-.
T Consensus 54 ~yel~~~~~~~~----~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G----~g~m~v~~ 120 (209)
T COG2140 54 VYELLESEPGER----GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKG----EGRMLVQK 120 (209)
T ss_pred EEEeeccccccc----CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEec----cEEEEEEc
Confidence 346666667532 888877664 34432 6677899999999999999 888 9999999 99998755
Q ss_pred CCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceee
Q 046186 109 PGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFH 188 (436)
Q Consensus 109 pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~ 188 (436)
++ .+-++..+++||+++||++..|++.|+|+++|+++.++..+... .+.
T Consensus 121 ~~-----------------------G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~--------~y~ 169 (209)
T COG2140 121 PE-----------------------GEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQ--------DYD 169 (209)
T ss_pred CC-----------------------CcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCc--------eee
Confidence 42 12347899999999999999999999999999999888643322 233
Q ss_pred ecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHh
Q 046186 189 LAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLR 239 (436)
Q Consensus 189 laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~ 239 (436)
+ ..++.+.+..+++..|+.+....+.+.
T Consensus 170 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~~D~p~ 197 (209)
T COG2140 170 L-----------------------IAWLGGMPPVLVENGLNKNPKYVDVPR 197 (209)
T ss_pred e-----------------------eehhccCCceeeccccccCcccccCcc
Confidence 2 467788888899988887766655543
No 13
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.11 E-value=4.8e-10 Score=87.26 Aligned_cols=69 Identities=23% Similarity=0.383 Sum_probs=61.6
Q ss_pred EEEecCCceecCeeecCC-ceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEe
Q 046186 71 RHTIRQKGLLLPQFSNSP-QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFAL 149 (436)
Q Consensus 71 r~~i~pg~l~~Ph~h~a~-ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~i 149 (436)
++++.||+...+|+|+.. +++||++| ++.+.+ . .+...|++||.+++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G----~~~~~~-~---------------------------~~~~~l~~Gd~~~i 49 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSG----EGTLTV-D---------------------------GERVELKPGDAIYI 49 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEES----EEEEEE-T---------------------------TEEEEEETTEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEEC----CEEEEE-c---------------------------cEEeEccCCEEEEE
Confidence 578999999999999966 99999999 988873 1 23789999999999
Q ss_pred CCCCeEEEeccCCCcEEEEEEE
Q 046186 150 PAGVAHWCYNEGSTPVVAVVLL 171 (436)
Q Consensus 150 PaG~~h~~~N~g~e~l~~v~~~ 171 (436)
|+|..|.+.|.++++++++.++
T Consensus 50 ~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 50 PPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp ETTSEEEEEEESSSEEEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEEC
Confidence 9999999999999999998875
No 14
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.10 E-value=8.7e-10 Score=96.98 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=69.8
Q ss_pred ccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeee
Q 046186 62 FQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRR 140 (436)
Q Consensus 62 l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~ 140 (436)
.....+.+..++++||+....|.|| ..+.+||++| ++++.+- ++.+.
T Consensus 38 ~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G----~~~~~~~----------------------------g~~~~ 85 (131)
T COG1917 38 NEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEG----EGTVQLE----------------------------GEKKE 85 (131)
T ss_pred CCCceEEEEEEEECCCcccccccCCCcceEEEEEec----EEEEEec----------------------------CCceE
Confidence 3456788999999999999999999 9999999999 9999852 23689
Q ss_pred eccCcEEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186 141 FRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDV 173 (436)
Q Consensus 141 l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~ 173 (436)
+++||++++|+|+.||+.|.+++..+.++++..
T Consensus 86 l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~~~ 118 (131)
T COG1917 86 LKAGDVIIIPPGVVHGLKAVEDEPMVLLLVFPL 118 (131)
T ss_pred ecCCCEEEECCCCeeeeccCCCCceeEEEEeee
Confidence 999999999999999999999887677777665
No 15
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.6e-09 Score=95.42 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=69.4
Q ss_pred ccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186 64 CAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR 142 (436)
Q Consensus 64 ~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~ 142 (436)
...+++.++.+.||+-..+|.|. .+|+.||++| +|.+.+ ..+...|+
T Consensus 33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G----~g~v~~----------------------------~~~~~~v~ 80 (127)
T COG0662 33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEG----TGKVTI----------------------------GGEEVEVK 80 (127)
T ss_pred CCcEEEEEEEECCCcccCcccccCcceEEEEEee----EEEEEE----------------------------CCEEEEec
Confidence 35789999999999987777766 8999999999 999985 13578999
Q ss_pred cCcEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186 143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVAN 175 (436)
Q Consensus 143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n 175 (436)
+||+++||+|++|++.|.|..+|+++++-....
T Consensus 81 ~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~ 113 (127)
T COG0662 81 AGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPY 113 (127)
T ss_pred CCCEEEECCCCcEEEEcCCCcceEEEEEecCCc
Confidence 999999999999999999999999998765444
No 16
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=99.06 E-value=2e-09 Score=109.19 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=67.6
Q ss_pred ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186 66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD 145 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD 145 (436)
.+.+....|.||....||=|++..+.||++| +|...+|. .+...+++||
T Consensus 80 tl~a~~q~l~pGe~~~~HRht~sAl~~vveG----~G~~t~V~---------------------------g~~~~~~~gD 128 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHTQSALRFIVEG----KGAFTAVD---------------------------GERTTMHPGD 128 (335)
T ss_pred hHHhhhEEeCCCCCCCccccccceEEEEEEc----CceEEEEC---------------------------CEEEeeeCCC
Confidence 4567778999999999999999999999999 99666563 2358999999
Q ss_pred EEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186 146 IFALPAGVAHWCYNEGSTPVVAVVLLDVAN 175 (436)
Q Consensus 146 v~~iPaG~~h~~~N~g~e~l~~v~~~d~~n 175 (436)
+|++|.+.-|-..|.||++++++.++|..-
T Consensus 129 ~~~tP~w~wH~H~n~~d~~~~wld~lD~Pl 158 (335)
T TIGR02272 129 FIITPSWTWHDHGNPGDEPMIWLDGLDIPL 158 (335)
T ss_pred EEEeCCCeeEecccCCCCcEEEEecCCHHH
Confidence 999999999999999999988877777543
No 17
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.95 E-value=1.1e-08 Score=96.45 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=74.3
Q ss_pred ccccccceEEEEEecCCce------ecccccCCCc--EEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE
Q 046186 328 VLRWIQLSAERGLLHRNAM------MVPHWNLNAH--SIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK 399 (436)
Q Consensus 328 ~L~~l~ls~~~v~L~~gam------~~PHwh~~A~--ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~ 399 (436)
.++.-+|.+..+.|.||.+ ..+|||++++ |+.||++|+|.+.+-+.+|.. ....+++||+++||.|+.|.+
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~-~~~~v~pGd~v~IPpg~~H~~ 140 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEA-RWIEMEPGTVVYVPPYWAHRS 140 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcE-EEEEECCCCEEEECCCCcEEe
Confidence 4556689999999999996 6679999765 999999999999998877653 445699999999999999976
Q ss_pred -EeCCCcEEEEEEEecC
Q 046186 400 -RAGGAEFEWISFKTND 415 (436)
Q Consensus 400 -~ag~e~~~~l~f~~s~ 415 (436)
|+|+++|+|+++...+
T Consensus 141 iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 141 VNTGDEPLVFLACYPAD 157 (191)
T ss_pred EECCCCCEEEEEEEcCC
Confidence 9999999999987654
No 18
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.95 E-value=1.1e-08 Score=90.13 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=74.8
Q ss_pred eecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCC
Q 046186 45 VECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFG 124 (436)
Q Consensus 45 ~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~ 124 (436)
+.+..|.++.+....+ ..++++.+.+|+||+-...|+|+..|++||++| ++.+..+.
T Consensus 16 ~~~~~~~~krll~~~~---~~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G----~~~~~~i~---------------- 72 (125)
T PRK13290 16 VKAGNWTSRRLLLKDD---GMGFSFHETTIYAGTETHLHYKNHLEAVYCIEG----EGEVEDLA---------------- 72 (125)
T ss_pred eecCCceEEEEEEecC---CCCEEEEEEEECCCCcccceeCCCEEEEEEEeC----EEEEEEcC----------------
Confidence 4556666655543222 356899999999999888899886689999999 99887221
Q ss_pred ccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186 125 ESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVA 174 (436)
Q Consensus 125 ~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~ 174 (436)
..+.+.|++||++++|++.+|++.|. +++++++++...
T Consensus 73 ----------~g~~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~tP~ 110 (125)
T PRK13290 73 ----------TGEVHPIRPGTMYALDKHDRHYLRAG--EDMRLVCVFNPP 110 (125)
T ss_pred ----------CCEEEEeCCCeEEEECCCCcEEEEcC--CCEEEEEEECCC
Confidence 13479999999999999999999997 789999988744
No 19
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.90 E-value=2.2e-08 Score=94.27 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=75.3
Q ss_pred EEEEeCCCCccccccceEEEEEEecCCce------ecCeeec---CCceEEEEecccceEEEEEeeCCCCCCcccCCCCC
Q 046186 51 VVETWDPGHEQFQCAGVAVVRHTIRQKGL------LLPQFSN---SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQG 121 (436)
Q Consensus 51 ~~e~~~~~~p~l~~~gv~~~r~~i~pg~l------~~Ph~h~---a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~ 121 (436)
.++++. ..+.+...++.+...+|.||.+ ..+|||+ .+|+.||++| +|.+-+-.+.
T Consensus 53 ~Y~v~~-~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG----~g~~~l~~~~----------- 116 (191)
T PRK04190 53 VYEVYA-IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKG----KGLMLLQDPE----------- 116 (191)
T ss_pred EEEEEE-ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeC----EEEEEEecCC-----------
Confidence 345543 2334556789999999999996 5679996 4599999999 9998763221
Q ss_pred CCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186 122 GFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVA 174 (436)
Q Consensus 122 ~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~ 174 (436)
...+...+++||+++||+|++|.+.|.|+++|+++++....
T Consensus 117 ------------G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 117 ------------GEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred ------------CcEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEEEEcCC
Confidence 01236899999999999999999999999999999987644
No 20
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.89 E-value=9.2e-09 Score=80.00 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=60.6
Q ss_pred EEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEE
Q 046186 338 RGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFK 412 (436)
Q Consensus 338 ~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~ 412 (436)
.+.|.||+...+|+|+...++.||++|++.+. ++ |+ ...|++||.++||++-+|.. |.+++.+.|+.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~--~~---~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD--GE---RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET--TE---EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec--cE---EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 57899999999999999889999999999999 55 23 34599999999999999987 8888999998864
No 21
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.79 E-value=4.8e-08 Score=96.21 Aligned_cols=272 Identities=17% Similarity=0.183 Sum_probs=161.4
Q ss_pred CCceeecCCcEEEEeCCCCccccccc-----eEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcc
Q 046186 41 PNNRVECEAGVVETWDPGHEQFQCAG-----VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETY 115 (436)
Q Consensus 41 P~~~~~se~G~~e~~~~~~p~l~~~g-----v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~ 115 (436)
--..+..+.|.-++.-=++|.|+... +-+..--|-||-..+.|-|+...+-||++| +|...+|+-
T Consensus 61 sgeli~~~~a~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsqsAlRFvveG----~Ga~T~VdG------ 130 (351)
T COG3435 61 SGELISAREAVRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQSALRFVVEG----KGAYTVVDG------ 130 (351)
T ss_pred hhhccCcccceeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccccccceEEEEec----cceeEeecC------
Confidence 33456677777776655667666542 224556789999999999999999999999 999988842
Q ss_pred cCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChh
Q 046186 116 QSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQ 195 (436)
Q Consensus 116 ~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~ 195 (436)
.-..+++||.+..|++.-|-..|.|+++++++--+|+.- .|+|+
T Consensus 131 ---------------------er~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDipl-v~~l~-------------- 174 (351)
T COG3435 131 ---------------------ERTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDIPL-VNSLG-------------- 174 (351)
T ss_pred ---------------------ceeeccCCCEEEccCceeccCCCCCCCceEEEcccchHH-HHhhc--------------
Confidence 135889999999999999999999999999887777542 22222
Q ss_pred hhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhh
Q 046186 196 EFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSE 275 (436)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~ 275 (436)
..+|.-++++.....-..+...++ .-.+++ |-..+....+.- --.
T Consensus 175 -----------------~gFfe~~~e~~q~v~~~~~d~~ar--------------~~~~~r---P~~~r~~~~~SP-lf~ 219 (351)
T COG3435 175 -----------------AGFFEEHPEEQQPVTRPEGDSLAR--------------YGPGMR---PLRHRWGKPYSP-LFN 219 (351)
T ss_pred -----------------ccccccCchhcCcccCCCCCchhh--------------cCCCcc---ccccCCCCCCCc-ccc
Confidence 133333444333322221111111 111111 111000000000 000
Q ss_pred hhhcccccCCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCC--CCccccccceEEEEEecCCceecccccC
Q 046186 276 YERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFN--LPVLRWIQLSAERGLLHRNAMMVPHWNL 353 (436)
Q Consensus 276 ~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~--~P~L~~l~ls~~~v~L~~gam~~PHwh~ 353 (436)
+ .|.-...-|+ ++. -+ ..+|-+ .|-.+..+|+.+ .+. - .|.+.+-.|.||..-.+|=|.
T Consensus 220 Y----~w~~t~eAL~------~la-~~---e~~dp~--dG~~~ryvNP~TGg~~m-p--tI~a~mqlL~~Gf~~~~~r~t 280 (351)
T COG3435 220 Y----AWDRTREALE------RLA-RL---EEPDPF--DGYKMRYVNPVTGGYAM-P--TIGAFMQLLPPGFHGKAHRHT 280 (351)
T ss_pred c----ccccHHHHHH------HHH-hc---cCCCCC--CcceEEEecCCCCCCcC-c--hHHHHHHhcCCcccCCceecc
Confidence 0 0000000000 000 00 111111 222333333221 111 1 466666678899999999986
Q ss_pred CCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCCccc
Q 046186 354 NAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISP 421 (436)
Q Consensus 354 ~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~~~~ 421 (436)
++ .|.-|.+|+|.+.|=+ ..|+ .++||+||||.=+.|-..++++++.++|| |++|....
T Consensus 281 ~s-~iy~V~eGsg~~~Ig~----~rf~--~~~~D~fvVPsW~~~~~~~gs~da~LFsf--sD~PV~ea 339 (351)
T COG3435 281 DS-TIYHVVEGSGYTIIGG----ERFD--WSAGDIFVVPSWAWHEHVNGSEDAVLFSF--SDRPVMEA 339 (351)
T ss_pred CC-EEEEEEecceeEEECC----EEee--ccCCCEEEccCcceeecccCCcceEEEec--CCcHHHHH
Confidence 65 6777999999988743 3355 89999999999999999888888887777 78875443
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.77 E-value=6e-08 Score=95.54 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=66.4
Q ss_pred ceEEEEEEecCCceecC-eeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186 66 GVAVVRHTIRQKGLLLP-QFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG 144 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~P-h~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G 144 (436)
++.+..++++||+-... |.|...+.+||++| +|.+.+ ..+...|++|
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G----~G~~~~----------------------------~g~~~~V~~G 225 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEG----KGVYNL----------------------------DNNWVPVEAG 225 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEec----eEEEEE----------------------------CCEEEEecCC
Confidence 67888899999999885 55668899999999 999864 2457999999
Q ss_pred cEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186 145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVA 174 (436)
Q Consensus 145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~ 174 (436)
|+++||++++||++|.|+++++++.-=|++
T Consensus 226 D~i~i~~~~~h~~~~~G~~~~~~l~ykd~n 255 (260)
T TIGR03214 226 DYIWMGAYCPQACYAGGRGEFRYLLYKDMN 255 (260)
T ss_pred CEEEECCCCCEEEEecCCCcEEEEEEcccc
Confidence 999999999999999999999988755544
No 23
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.70 E-value=5.4e-08 Score=87.72 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=66.8
Q ss_pred cceEEEEEEecCCce-ecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186 65 AGVAVVRHTIRQKGL-LLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR 142 (436)
Q Consensus 65 ~gv~~~r~~i~pg~l-~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~ 142 (436)
..+.+....++||+- .++|||. .+|++||++| ++.+-+ ......|+
T Consensus 40 ~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeG----E~~l~~----------------------------d~~e~~lr 87 (161)
T COG3837 40 KRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEG----EGTLRE----------------------------DGGETRLR 87 (161)
T ss_pred hhcccceEEeCCCCccccccccccCceEEEEEcC----ceEEEE----------------------------CCeeEEec
Confidence 346677789999995 8899999 8999999999 888753 12368999
Q ss_pred cCcEEEeCCC--CeEEEeccCCCcEEEEEEEecCC
Q 046186 143 QGDIFALPAG--VAHWCYNEGSTPVVAVVLLDVAN 175 (436)
Q Consensus 143 ~GDv~~iPaG--~~h~~~N~g~e~l~~v~~~d~~n 175 (436)
+||++.+||| ++|.+.|.++..++.+++-+...
T Consensus 88 pGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~r~~ 122 (161)
T COG3837 88 PGDSAGFPAGVGNAHHLINRSDVILRYLEVGTREP 122 (161)
T ss_pred CCceeeccCCCcceeEEeecCCceEEEEEeccccc
Confidence 9999999999 99999999999999888766544
No 24
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.60 E-value=6.8e-07 Score=81.29 Aligned_cols=88 Identities=22% Similarity=0.254 Sum_probs=76.4
Q ss_pred eecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCC
Q 046186 45 VECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGF 123 (436)
Q Consensus 45 ~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~ 123 (436)
+...-|.+++++. ..++.+.++++.||..+..|+|. ..|.-+|++| .|.+.+
T Consensus 47 ~~rpWG~~~~l~~------~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G----~a~v~~----------------- 99 (151)
T PF01050_consen 47 VYRPWGSYEVLDE------GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSG----TAEVTL----------------- 99 (151)
T ss_pred EecCCcEEEEEEc------cCCEEEEEEEEcCCCccceeeecccccEEEEEeC----eEEEEE-----------------
Confidence 3346788888774 24688999999999999999998 9999999999 999875
Q ss_pred CccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186 124 GESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVL 170 (436)
Q Consensus 124 ~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~ 170 (436)
..+...+++||++.||+|..|.+.|.|+.+|++|-+
T Consensus 100 -----------~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEV 135 (151)
T PF01050_consen 100 -----------DDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEV 135 (151)
T ss_pred -----------CCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEEE
Confidence 135789999999999999999999999999999874
No 25
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.60 E-value=3.4e-07 Score=97.42 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=67.3
Q ss_pred ccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186 64 CAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR 142 (436)
Q Consensus 64 ~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~ 142 (436)
..++.+.++++.||+-...|+|. ..|..||++| ++.+.+ ..+.+.|.
T Consensus 382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG----~~~v~i----------------------------dg~~~~L~ 429 (478)
T PRK15460 382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAG----TAKVTI----------------------------DGDIKLLG 429 (478)
T ss_pred CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEee----EEEEEE----------------------------CCEEEEec
Confidence 34688999999999976667765 7799999999 999885 13579999
Q ss_pred cCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186 143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLD 172 (436)
Q Consensus 143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d 172 (436)
+||.++||+|.+|++.|.|++++++|++..
T Consensus 430 ~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~ 459 (478)
T PRK15460 430 ENESIYIPLGATHCLENPGKIPLDLIEVRS 459 (478)
T ss_pred CCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence 999999999999999999999999999754
No 26
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.59 E-value=2.6e-07 Score=98.25 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=67.9
Q ss_pred ccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186 64 CAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR 142 (436)
Q Consensus 64 ~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~ 142 (436)
..++.+.++++.||+-..+|+|. ..|..||++| ++.+.+ ..++..|+
T Consensus 373 ~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G----~~~v~~----------------------------dg~~~~l~ 420 (468)
T TIGR01479 373 GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSG----TARVTI----------------------------GDETLLLT 420 (468)
T ss_pred CCCEEEEEEEECCCCccCccccCCCceEEEEEee----EEEEEE----------------------------CCEEEEec
Confidence 34689999999999988888887 8888899999 998874 13478999
Q ss_pred cCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186 143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLD 172 (436)
Q Consensus 143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d 172 (436)
+||+++||+|.+|.+.|.|+++++++++..
T Consensus 421 ~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~ 450 (468)
T TIGR01479 421 ENESTYIPLGVIHRLENPGKIPLELIEVQS 450 (468)
T ss_pred CCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence 999999999999999999999999999864
No 27
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.56 E-value=7.3e-07 Score=78.61 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=66.0
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK 412 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~ 412 (436)
++++.++.|.||+-...|+|.. .|+.||++|++.+..++. .. ...|.+||.+++|.+-+|.+.+. +++++++..
T Consensus 34 ~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~--g~--~~~L~aGD~i~~~~~~~H~~~N~-e~~~~l~v~ 107 (125)
T PRK13290 34 GFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT--GE--VHPIRPGTMYALDKHDRHYLRAG-EDMRLVCVF 107 (125)
T ss_pred CEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC--CE--EEEeCCCeEEEECCCCcEEEEcC-CCEEEEEEE
Confidence 6788999999999989999976 599999999999995531 22 34599999999999999998554 899999998
Q ss_pred ecCCCC
Q 046186 413 TNDNAM 418 (436)
Q Consensus 413 ~s~~p~ 418 (436)
+-.-.+
T Consensus 108 tP~~~~ 113 (125)
T PRK13290 108 NPPLTG 113 (125)
T ss_pred CCCCCC
Confidence 754444
No 28
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.56 E-value=5e-07 Score=84.26 Aligned_cols=76 Identities=11% Similarity=0.050 Sum_probs=63.7
Q ss_pred cceEEEEEEecCCcee-cCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186 65 AGVAVVRHTIRQKGLL-LPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ 143 (436)
Q Consensus 65 ~gv~~~r~~i~pg~l~-~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~ 143 (436)
..+.+...++.||+-. .+|+|+..|++||++| +..+.+ ..+.+.|++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G----~~~~~~----------------------------~~~~~~l~~ 152 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQGEEIGTVLEG----EIVLTI----------------------------NGQDYHLVA 152 (185)
T ss_pred CeeEEEEEEccCCCCcccccccCCcEEEEEEEe----EEEEEE----------------------------CCEEEEecC
Confidence 3466777889999964 4567889999999999 888864 134689999
Q ss_pred CcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186 144 GDIFALPAGVAHWCYNEGSTPVVAVVLLD 172 (436)
Q Consensus 144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~d 172 (436)
||.++||++++|.+.|.++++++++++..
T Consensus 153 Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~ 181 (185)
T PRK09943 153 GQSYAINTGIPHSFSNTSAGICRIISAHT 181 (185)
T ss_pred CCEEEEcCCCCeeeeCCCCCCeEEEEEeC
Confidence 99999999999999999999999888754
No 29
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=6e-07 Score=79.06 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=70.8
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF 411 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f 411 (436)
..++..+.+.||+-..+|.|....|+.||++|+|.|.+=+ . ...|++||+++||+|.+|.. |.|+.+|++++.
T Consensus 35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~---~---~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG---E---EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC---E---EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 7788999999999999999999999999999999999753 2 34499999999999999998 889999999999
Q ss_pred EecCCCC
Q 046186 412 KTNDNAM 418 (436)
Q Consensus 412 ~~s~~p~ 418 (436)
.......
T Consensus 109 ~~p~~~~ 115 (127)
T COG0662 109 QSPPYLG 115 (127)
T ss_pred ecCCcCC
Confidence 8766554
No 30
>PRK11171 hypothetical protein; Provisional
Probab=98.53 E-value=8.5e-07 Score=87.71 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=66.7
Q ss_pred ceEEEEEEecCCceecCe-eecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186 66 GVAVVRHTIRQKGLLLPQ-FSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG 144 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~Ph-~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G 144 (436)
++.+..++|+||+-+..| +|...|.+||++| ++.+.+ ..+.+.|++|
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G----~~~~~~----------------------------~~~~~~l~~G 230 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHVMEHGLYVLEG----KGVYRL----------------------------NNDWVEVEAG 230 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCCceEEEEEEeC----EEEEEE----------------------------CCEEEEeCCC
Confidence 378999999999988774 6779999999999 999874 2357899999
Q ss_pred cEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186 145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVA 174 (436)
Q Consensus 145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~ 174 (436)
|++.+|++.+||+.|.|+++++++..=|++
T Consensus 231 D~i~~~~~~~h~~~N~g~~~~~yl~~k~~n 260 (266)
T PRK11171 231 DFIWMRAYCPQACYAGGPGPFRYLLYKDVN 260 (266)
T ss_pred CEEEECCCCCEEEECCCCCcEEEEEEcccc
Confidence 999999999999999999999988765544
No 31
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.38 E-value=2.5e-06 Score=74.97 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=65.3
Q ss_pred ccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC-CCcEEE
Q 046186 330 RWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG-GAEFEW 408 (436)
Q Consensus 330 ~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag-~e~~~~ 408 (436)
..-.+++..+.+.||+....|.||-..+.+||++|++++++-. . ..++++||+++||+|-.|...+. ++.+.+
T Consensus 39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g---~---~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~ 112 (131)
T COG1917 39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG---E---KKELKAGDVIIIPPGVVHGLKAVEDEPMVL 112 (131)
T ss_pred CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecC---C---ceEecCCCEEEECCCCeeeeccCCCCceeE
Confidence 3457889999999999999999996779999999999999873 2 24599999999999999998444 444677
Q ss_pred EEEEec
Q 046186 409 ISFKTN 414 (436)
Q Consensus 409 l~f~~s 414 (436)
|+....
T Consensus 113 l~v~~~ 118 (131)
T COG1917 113 LLVFPL 118 (131)
T ss_pred EEEeee
Confidence 776655
No 32
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.22 E-value=1.4e-05 Score=74.82 Aligned_cols=87 Identities=16% Similarity=0.255 Sum_probs=55.6
Q ss_pred cccccceEEEEEecCCc------eecccccCC------CcEEEEEEeeeEEEEEEeCCC---CeEEEEEecCccEEEEcC
Q 046186 329 LRWIQLSAERGLLHRNA------MMVPHWNLN------AHSIMYAISGSCHVQVVDSYG---RSVYDGEVRRGQIMVVPQ 393 (436)
Q Consensus 329 L~~l~ls~~~v~L~~ga------m~~PHwh~~------A~ei~yV~~G~grv~vv~~~G---~~~~~~~l~~Gdv~vVP~ 393 (436)
|+.-+|-.....|.||- |.--|||+. ..|+-+|++|+|.+-+-+.+| ..++--.+.+||+++||.
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp 124 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP 124 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence 44445666666777774 567799998 679999999999999999987 245566799999999999
Q ss_pred CCEEEE-EeCCCcEEEEEEEecC
Q 046186 394 NFAVVK-RAGGAEFEWISFKTND 415 (436)
Q Consensus 394 g~~h~~-~ag~e~~~~l~f~~s~ 415 (436)
+|+|.. |+|++.|.+.....++
T Consensus 125 ~yaH~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 125 GYAHRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp T-EEEEEE-SSS-EEEEEEEETT
T ss_pred CceEEEEECCCCcEEEEEEEecC
Confidence 999986 9999999998877654
No 33
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=7.2e-06 Score=70.89 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=64.6
Q ss_pred cccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186 63 QCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF 141 (436)
Q Consensus 63 ~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l 141 (436)
...++-+-.++|.||+-.--|.|. -+..+||+.| +..+=+= .+ -..-..+
T Consensus 42 Gas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG----~ah~w~G---------------------~r----LE~ha~~ 92 (142)
T COG4101 42 GASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSG----EAHTWYG---------------------NR----LEEHAEV 92 (142)
T ss_pred ccceeeEEEEeeCCCccccccccccccEEEEEEec----eeeeeec---------------------cc----eeeeEEe
Confidence 345677888999999999999998 7788999999 7765431 00 0124788
Q ss_pred ccCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186 142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLD 172 (436)
Q Consensus 142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d 172 (436)
++||.|+||+|++|--+|..++++.++.+-.
T Consensus 93 ~pGDf~YiPpgVPHqp~N~S~ep~s~vIaRs 123 (142)
T COG4101 93 GPGDFFYIPPGVPHQPANLSTEPLSAVIARS 123 (142)
T ss_pred cCCCeEEcCCCCCCcccccCCCCeEEEEEcc
Confidence 9999999999999999999999998776543
No 34
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.20 E-value=7.9e-06 Score=86.96 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=67.5
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF 411 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f 411 (436)
++.+..+.+.||+-..+|+|+...|..||++|++.+.+=+ + ...|++||.++||.+-+|.+ |.|++++++++.
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg---~---~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v 448 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD---E---TLLLTENESTYIPLGVIHRLENPGKIPLELIEV 448 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECC---E---EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 6888899999999889999999999889999999998533 2 34599999999999999987 889999999998
Q ss_pred EecC
Q 046186 412 KTND 415 (436)
Q Consensus 412 ~~s~ 415 (436)
.+.+
T Consensus 449 ~~~~ 452 (468)
T TIGR01479 449 QSGS 452 (468)
T ss_pred EcCC
Confidence 7644
No 35
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.19 E-value=1.1e-05 Score=73.42 Aligned_cols=89 Identities=13% Similarity=0.218 Sum_probs=74.2
Q ss_pred CCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcC
Q 046186 314 GAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQ 393 (436)
Q Consensus 314 ~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~ 393 (436)
.-|+...++..+ +..+-++.+.||..+++|.|...+|.-+|++|.|.+++= ...+ .+.+||.++||+
T Consensus 50 pWG~~~~l~~~~-------~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~----~~~~--~~~~g~sv~Ip~ 116 (151)
T PF01050_consen 50 PWGSYEVLDEGE-------GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD----DEEF--TLKEGDSVYIPR 116 (151)
T ss_pred CCcEEEEEEccC-------CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEEC----CEEE--EEcCCCEEEECC
Confidence 446777776432 567889999999999999999999999999999999962 2333 499999999999
Q ss_pred CCEEEE-EeCCCcEEEEEEEecC
Q 046186 394 NFAVVK-RAGGAEFEWISFKTND 415 (436)
Q Consensus 394 g~~h~~-~ag~e~~~~l~f~~s~ 415 (436)
|-.|.+ |.|+.+|+++.+-+..
T Consensus 117 g~~H~i~n~g~~~L~~IEVq~G~ 139 (151)
T PF01050_consen 117 GAKHRIENPGKTPLEIIEVQTGE 139 (151)
T ss_pred CCEEEEECCCCcCcEEEEEecCC
Confidence 999998 7788999999987643
No 36
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.13 E-value=5.4e-06 Score=73.27 Aligned_cols=68 Identities=18% Similarity=0.400 Sum_probs=58.0
Q ss_pred Cceecc-cccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEec
Q 046186 344 NAMMVP-HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTN 414 (436)
Q Consensus 344 gam~~P-Hwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s 414 (436)
|+++.= |||.+|||++.|++|++.+++=.++|..+ ++.+||+++||+|-.|+.+.++-+|..++-+--
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el---~v~~GDvlliPAGvGH~rl~sS~DF~VvGaYp~ 120 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQEL---EVGEGDVLLIPAGVGHCRLHSSADFQVVGAYPP 120 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCCCcee---eecCCCEEEEecCcccccccCCCCeEEEcccCC
Confidence 344443 69999999999999999999999998873 389999999999999999888888988886643
No 37
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=1.9e-05 Score=68.37 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=72.3
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF 411 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f 411 (436)
+|-+-.|.+.|||-.--|-|-+-...+||++|++++-.=+ +--+..++.+||+||||.|-||-- |.+++++..|..
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~---rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa 121 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGN---RLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA 121 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeecc---ceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence 6778889999999999999988778999999999987543 224678899999999999999986 999999999888
Q ss_pred EecCCCCcc
Q 046186 412 KTNDNAMIS 420 (436)
Q Consensus 412 ~~s~~p~~~ 420 (436)
.+..++..+
T Consensus 122 RsDp~~~Es 130 (142)
T COG4101 122 RSDPNPQES 130 (142)
T ss_pred ccCCCCCcC
Confidence 877776543
No 38
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.04 E-value=1.9e-05 Score=71.44 Aligned_cols=85 Identities=13% Similarity=0.273 Sum_probs=70.0
Q ss_pred CCCccccccceEEEEEecCCcee-cccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCC--CEEE-EE
Q 046186 325 NLPVLRWIQLSAERGLLHRNAMM-VPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQN--FAVV-KR 400 (436)
Q Consensus 325 ~~P~L~~l~ls~~~v~L~~gam~-~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g--~~h~-~~ 400 (436)
++=.|+ ++.+....|.||+-. .+|||..-.|++||++|++.+.+=+ | ...|++||+.=+|+| -+|+ +|
T Consensus 35 ~~~Gl~--~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~--~----e~~lrpGD~~gFpAG~~~aHhliN 106 (161)
T COG3837 35 DALGLK--RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG--G----ETRLRPGDSAGFPAGVGNAHHLIN 106 (161)
T ss_pred hhcChh--hcccceEEeCCCCccccccccccCceEEEEEcCceEEEECC--e----eEEecCCceeeccCCCcceeEEee
Confidence 455677 788889999999765 5799999999999999999887543 2 234999999999999 6665 59
Q ss_pred eCCCcEEEEEEEecCCC
Q 046186 401 AGGAEFEWISFKTNDNA 417 (436)
Q Consensus 401 ag~e~~~~l~f~~s~~p 417 (436)
.++..+.+|+..+....
T Consensus 107 ~s~~~~~yL~vG~r~~~ 123 (161)
T COG3837 107 RSDVILRYLEVGTREPD 123 (161)
T ss_pred cCCceEEEEEecccccc
Confidence 99999999999887653
No 39
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.00 E-value=4.6e-05 Score=71.03 Aligned_cols=74 Identities=12% Similarity=0.037 Sum_probs=58.8
Q ss_pred cceEEEEEecCCceec-ccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEE
Q 046186 333 QLSAERGLLHRNAMMV-PHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWIS 410 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~-PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~ 410 (436)
.+.+....+.||+-.. .||| ...|+.||++|++.+.+-+ . ..+|.+||.++||.+-+|.. |.+++.+.++.
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h-~~~E~~~Vl~G~~~~~~~~----~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~ 178 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKH-QGEEIGTVLEGEIVLTING----Q--DYHLVAGQSYAINTGIPHSFSNTSAGICRIIS 178 (185)
T ss_pred eeEEEEEEccCCCCccccccc-CCcEEEEEEEeEEEEEECC----E--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence 4555667889998655 4556 5589999999999998732 2 34599999999999999976 77788999998
Q ss_pred EEe
Q 046186 411 FKT 413 (436)
Q Consensus 411 f~~ 413 (436)
+.+
T Consensus 179 ~~~ 181 (185)
T PRK09943 179 AHT 181 (185)
T ss_pred EeC
Confidence 864
No 40
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.99 E-value=3.4e-05 Score=82.31 Aligned_cols=77 Identities=8% Similarity=0.119 Sum_probs=68.0
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF 411 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f 411 (436)
++.+.++.|.||+-..+|+|....|..||++|++.+++=+ -...|.+||.++||.+.+|.. |.|++++++++.
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg------~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG------DIKLLGENESIYIPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC------EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 6788899999999888899998889999999999999765 235599999999999999987 889999999998
Q ss_pred EecC
Q 046186 412 KTND 415 (436)
Q Consensus 412 ~~s~ 415 (436)
.+-+
T Consensus 458 ~~g~ 461 (478)
T PRK15460 458 RSGS 461 (478)
T ss_pred EcCC
Confidence 7654
No 41
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=97.97 E-value=5.7e-05 Score=70.68 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=54.8
Q ss_pred ccccccceEEEEEEecCCce------ecCeeecC-------CceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCcc
Q 046186 60 EQFQCAGVAVVRHTIRQKGL------LLPQFSNS-------PQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGES 126 (436)
Q Consensus 60 p~l~~~gv~~~r~~i~pg~l------~~Ph~h~a-------~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~ 126 (436)
..|+..++.....+|.||-+ ..-|||+. +|+.+|++| +|.+-+=.+.
T Consensus 43 ~~~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G----~g~~lLq~~~---------------- 102 (182)
T PF06560_consen 43 EWLQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSG----EGLILLQKEE---------------- 102 (182)
T ss_dssp -------EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEES----SEEEEEE-TT----------------
T ss_pred ccceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeC----EEEEEEEecC----------------
Confidence 45777789999999999974 56699864 899999999 9998774332
Q ss_pred CCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186 127 AGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVA 174 (436)
Q Consensus 127 ~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~ 174 (436)
+....| -....+++||+++||+|.+|-..|.|+++|++.++....
T Consensus 103 -~~~~~~--~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 103 -GDDVGD--VIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp -S-------EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEETT
T ss_pred -CCccee--EEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEecC
Confidence 111111 125789999999999999999999999999998877643
No 42
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=97.97 E-value=6.3e-05 Score=62.01 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=55.3
Q ss_pred ceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186 66 GVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG 144 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G 144 (436)
.++...+.|.|++.-.|...- ..-+.||++| ...+.+ |.....+.+|
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G----~v~Vti----------------------------~~~~f~v~~G 58 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKG----KVEVTI----------------------------HETSFVVTKG 58 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEES----EEEEEE----------------------------TTEEEEEETT
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeC----EEEEEE----------------------------cCcEEEEeCC
Confidence 478889999999998887765 9999999999 888875 4557899999
Q ss_pred cEEEeCCCCeEEEeccCCCcEEEEE
Q 046186 145 DIFALPAGVAHWCYNEGSTPVVAVV 169 (436)
Q Consensus 145 Dv~~iPaG~~h~~~N~g~e~l~~v~ 169 (436)
|+|.||+|-...+.|.++++++++.
T Consensus 59 ~~F~VP~gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 59 GSFQVPRGNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp -EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred CEEEECCCCEEEEEECCCCcEEEEE
Confidence 9999999999999999998888764
No 43
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=97.96 E-value=7.7e-05 Score=67.02 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=53.5
Q ss_pred ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186 66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD 145 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD 145 (436)
.+.+-.-+|.||.-.++|=|..+|+++|++| +|++-+- +|.+.|. ..-+.+.+-+++
T Consensus 43 evEVwlQTfAPG~~TPiHRHsCEEVFvVLkG----~GTl~l~--~~~~~~p-----------------G~pqef~~~pnS 99 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRHSCEEVFVVLKG----SGTLYLA--SSHEKYP-----------------GKPQEFPIFPNS 99 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEESS-EEEEEEE------EEEEE----SSSSS-------------------S-EEEEE-TTE
T ss_pred eeeEEeeeecCCCCCCCccccccEEEEEEec----ceEEEEe--cccccCC-----------------CCceEEEecCCC
Confidence 4789999999999999999999999999999 9998875 2322221 012358899999
Q ss_pred EEEeCCCCeEEEeccC-CCcEEEEEEEe
Q 046186 146 IFALPAGVAHWCYNEG-STPVVAVVLLD 172 (436)
Q Consensus 146 v~~iPaG~~h~~~N~g-~e~l~~v~~~d 172 (436)
.|.||.+.+|-+.|++ .+++.++.+++
T Consensus 100 Tf~IPvn~~HQv~NT~e~eDlqvlViiS 127 (167)
T PF02041_consen 100 TFHIPVNDAHQVWNTNEHEDLQVLVIIS 127 (167)
T ss_dssp EEEE-TT--EEEE---SSS-EEEEEEEE
T ss_pred eEEeCCCCcceeecCCCCcceEEEEEec
Confidence 9999999999999998 48999887765
No 44
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.84 E-value=5.8e-05 Score=70.09 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=49.1
Q ss_pred cCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCe
Q 046186 75 RQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVA 154 (436)
Q Consensus 75 ~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~ 154 (436)
.||.-...|+|+.+|++|+++| ...+.+++.| ..+...|++||+|++|+|++
T Consensus 42 Gpn~r~d~H~~~tdE~FyqleG----~~~l~v~d~g------------------------~~~~v~L~eGd~fllP~gvp 93 (177)
T PRK13264 42 GPNARTDFHYDPGEEFFYQLEG----DMYLKVQEDG------------------------KRRDVPIREGEMFLLPPHVP 93 (177)
T ss_pred cCCcccccccCCCceEEEEECC----eEEEEEEcCC------------------------ceeeEEECCCCEEEeCCCCC
Confidence 6777777899999999999999 9999987643 11468999999999999999
Q ss_pred EEEecc
Q 046186 155 HWCYNE 160 (436)
Q Consensus 155 h~~~N~ 160 (436)
|.....
T Consensus 94 HsP~r~ 99 (177)
T PRK13264 94 HSPQRE 99 (177)
T ss_pred cCCccC
Confidence 998774
No 45
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.82 E-value=9.9e-05 Score=62.89 Aligned_cols=63 Identities=19% Similarity=0.395 Sum_probs=45.6
Q ss_pred CCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeE
Q 046186 76 QKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAH 155 (436)
Q Consensus 76 pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h 155 (436)
++-...||||+.-++.||++| ++.+.+ ..+.+.+++||++.+|+|.+|
T Consensus 12 ~~~~~~~h~h~~~~i~~v~~G----~~~~~~----------------------------~~~~~~l~~g~~~li~p~~~H 59 (136)
T PF02311_consen 12 PNFEFPPHWHDFYEIIYVLSG----EGTLHI----------------------------DGQEYPLKPGDLFLIPPGQPH 59 (136)
T ss_dssp TT-SEEEETT-SEEEEEEEEE-----EEEEE----------------------------TTEEEEE-TT-EEEE-TTS-E
T ss_pred CCCccCCEECCCEEEEEEeCC----EEEEEE----------------------------CCEEEEEECCEEEEecCCccE
Confidence 444578999999999999999 999864 245799999999999999999
Q ss_pred EEeccCCCcEEEEEE
Q 046186 156 WCYNEGSTPVVAVVL 170 (436)
Q Consensus 156 ~~~N~g~e~l~~v~~ 170 (436)
.+.-.+++++..+.+
T Consensus 60 ~~~~~~~~~~~~~~i 74 (136)
T PF02311_consen 60 SYYPDSNEPWEYYWI 74 (136)
T ss_dssp EEEE-TTSEEEEEEE
T ss_pred EEecCCCCCEEEEEE
Confidence 998887667766654
No 46
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.77 E-value=0.0001 Score=67.51 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=48.2
Q ss_pred cCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCe
Q 046186 75 RQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVA 154 (436)
Q Consensus 75 ~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~ 154 (436)
.||.-.-.|.|+.+|++||++| +..+-+...| .-+...|++||++++|+|++
T Consensus 36 Gpn~R~d~H~~~tdE~FyqleG----~~~l~v~d~g------------------------~~~~v~L~eGd~flvP~gvp 87 (159)
T TIGR03037 36 GPNARTDFHDDPGEEFFYQLKG----EMYLKVTEEG------------------------KREDVPIREGDIFLLPPHVP 87 (159)
T ss_pred CCCCCcccccCCCceEEEEEcc----eEEEEEEcCC------------------------cEEEEEECCCCEEEeCCCCC
Confidence 5555566787779999999999 9888876432 12468999999999999999
Q ss_pred EEEeccCCC
Q 046186 155 HWCYNEGST 163 (436)
Q Consensus 155 h~~~N~g~e 163 (436)
|......++
T Consensus 88 HsP~r~~~t 96 (159)
T TIGR03037 88 HSPQRPAGS 96 (159)
T ss_pred cccccCCCc
Confidence 998875443
No 47
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.72 E-value=0.00016 Score=59.79 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=51.4
Q ss_pred cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186 65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG 144 (436)
Q Consensus 65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G 144 (436)
.+..+..+.+.||+.++.|.|+..+.+||++| +...+ ..++.+|
T Consensus 22 ~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG----~~~d~--------------------------------~~~~~~G 65 (91)
T PF12973_consen 22 TGERVSLLRLEPGASLPRHRHPGGEEILVLEG----ELSDG--------------------------------DGRYGAG 65 (91)
T ss_dssp TTEEEEEEEE-TTEEEEEEEESS-EEEEEEEC----EEEET--------------------------------TCEEETT
T ss_pred ccCEEEEEEECCCCCcCccCCCCcEEEEEEEE----EEEEC--------------------------------CccCCCC
Confidence 46788999999999999999999999999999 54432 1367999
Q ss_pred cEEEeCCCCeEEEeccCCCcEEEE
Q 046186 145 DIFALPAGVAHWCYNEGSTPVVAV 168 (436)
Q Consensus 145 Dv~~iPaG~~h~~~N~g~e~l~~v 168 (436)
|.+..|+|..|-... ++.+.++
T Consensus 66 ~~~~~p~g~~h~~~s--~~gc~~~ 87 (91)
T PF12973_consen 66 DWLRLPPGSSHTPRS--DEGCLIL 87 (91)
T ss_dssp EEEEE-TTEEEEEEE--SSCEEEE
T ss_pred eEEEeCCCCccccCc--CCCEEEE
Confidence 999999999999884 4555443
No 48
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.68 E-value=0.00022 Score=65.37 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=47.6
Q ss_pred eecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccccccee-eeeccCcEEEeCCCCeEEE
Q 046186 79 LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI-RRFRQGDIFALPAGVAHWC 157 (436)
Q Consensus 79 l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~-~~l~~GDv~~iPaG~~h~~ 157 (436)
+...|.|..+|+-||+.| +|...+-..+ ..-+ ..+++||.++||+|+.||+
T Consensus 84 f~~EH~H~deEvR~i~~G----~g~Fdvr~~~------------------------~~wiri~~e~GDli~vP~g~~HrF 135 (157)
T PF03079_consen 84 FFEEHTHEDEEVRYIVDG----SGYFDVRDGD------------------------DVWIRILCEKGDLIVVPAGTYHRF 135 (157)
T ss_dssp HCS-EEESS-EEEEEEEC----EEEEEEE-TT------------------------CEEEEEEEETTCEEEE-TT--EEE
T ss_pred hheeEecChheEEEEeCc----EEEEEEEcCC------------------------CEEEEEEEcCCCEEecCCCCceeE
Confidence 466999999999999999 9999986432 1123 6889999999999999999
Q ss_pred eccCCCcEEEEEEEe
Q 046186 158 YNEGSTPVVAVVLLD 172 (436)
Q Consensus 158 ~N~g~e~l~~v~~~d 172 (436)
.-..+..+.++=+|.
T Consensus 136 ~~~~~~~i~aiRlF~ 150 (157)
T PF03079_consen 136 TLGESPYIKAIRLFK 150 (157)
T ss_dssp EESTTSSEEEEEEES
T ss_pred EcCCCCcEEEEEeec
Confidence 865556777776664
No 49
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.63 E-value=0.00034 Score=65.04 Aligned_cols=57 Identities=19% Similarity=0.383 Sum_probs=46.7
Q ss_pred cCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186 342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA 401 (436)
Q Consensus 342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a 401 (436)
.||.=..-|+|+ +.||.|+++|+..++|++ +|+ .-+..|++||+|+||+|-+|.-.+
T Consensus 42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d-~g~-~~~v~L~eGd~fllP~gvpHsP~r 98 (177)
T PRK13264 42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQE-DGK-RRDVPIREGEMFLLPPHVPHSPQR 98 (177)
T ss_pred cCCcccccccCC-CceEEEEECCeEEEEEEc-CCc-eeeEEECCCCEEEeCCCCCcCCcc
Confidence 466667779986 689999999999999999 343 235569999999999999998644
No 50
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=97.54 E-value=0.0002 Score=68.76 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=62.0
Q ss_pred ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186 66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD 145 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD 145 (436)
+..+..+.|.||+-++.|.|...|+.+|++| .- .+. ...+.+||
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG----~f----~de----------------------------~g~y~~Gd 169 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHG----AF----SDE----------------------------TGVYGVGD 169 (215)
T ss_pred CcEEEEEEECCCCccCCCcCCCcEEEEEEEE----EE----EcC----------------------------CCccCCCe
Confidence 4577899999999999999999999999999 52 111 24789999
Q ss_pred EEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186 146 IFALPAGVAHWCYNEGSTPVVAVVLLDV 173 (436)
Q Consensus 146 v~~iPaG~~h~~~N~g~e~l~~v~~~d~ 173 (436)
.+.+|+|..|...+.+++++++++++|-
T Consensus 170 ~i~~p~~~~H~p~a~~~~~Cicl~v~da 197 (215)
T TIGR02451 170 FEEADGSVQHQPRTVSGGDCLCLAVLDA 197 (215)
T ss_pred EEECCCCCCcCcccCCCCCeEEEEEecC
Confidence 9999999999999998899999988873
No 51
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=97.52 E-value=0.00053 Score=56.57 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=52.3
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWI 409 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l 409 (436)
.+++..+.|.||+.-.|--.-+.+-+.||++|...|++-+ + .| .+.+|++|+||+|--+.+ |.+++.+.++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~---~-~f--~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHE---T-SF--VVTKGGSFQVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETT---E-EE--EEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcC---c-EE--EEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence 5788999999999999888878889999999999999854 2 23 499999999999999887 8887766553
No 52
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.49 E-value=0.00049 Score=63.21 Aligned_cols=68 Identities=22% Similarity=0.368 Sum_probs=54.9
Q ss_pred eecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEe
Q 046186 79 LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCY 158 (436)
Q Consensus 79 l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~ 158 (436)
+..=|.|..+|+.|++.| +|...+..+.. +.....+.+||.+.||+|+-||+-
T Consensus 87 F~~EH~H~d~EvRy~vaG----~GiF~v~~~d~-----------------------~~~~i~c~~gDLI~vP~gi~HwFt 139 (181)
T COG1791 87 FLQEHLHTDDEVRYFVAG----EGIFDVHSPDG-----------------------KVYQIRCEKGDLISVPPGIYHWFT 139 (181)
T ss_pred HHHHhccCCceEEEEEec----ceEEEEECCCC-----------------------cEEEEEEccCCEEecCCCceEEEE
Confidence 355699999999999999 99999876632 233467788999999999999998
Q ss_pred ccCCCcEEEEEEEec
Q 046186 159 NEGSTPVVAVVLLDV 173 (436)
Q Consensus 159 N~g~e~l~~v~~~d~ 173 (436)
-.-+-.+++|-+|..
T Consensus 140 lt~~~~f~AvRlF~~ 154 (181)
T COG1791 140 LTESPNFKAVRLFTE 154 (181)
T ss_pred ccCCCcEEEEEEeeC
Confidence 766667888777763
No 53
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.49 E-value=0.00052 Score=62.84 Aligned_cols=51 Identities=18% Similarity=0.444 Sum_probs=40.8
Q ss_pred ccccCC-CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186 349 PHWNLN-AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA 401 (436)
Q Consensus 349 PHwh~~-A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a 401 (436)
.+||.+ +.||.|+++|+..+.+.+. |. .-+-.|++||+|+||+|-+|.-.+
T Consensus 41 ~d~H~~~tdE~FyqleG~~~l~v~d~-g~-~~~v~L~eGd~flvP~gvpHsP~r 92 (159)
T TIGR03037 41 TDFHDDPGEEFFYQLKGEMYLKVTEE-GK-REDVPIREGDIFLLPPHVPHSPQR 92 (159)
T ss_pred cccccCCCceEEEEEcceEEEEEEcC-Cc-EEEEEECCCCEEEeCCCCCccccc
Confidence 345554 7899999999999999985 33 234569999999999999998654
No 54
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.44 E-value=0.00054 Score=58.31 Aligned_cols=66 Identities=20% Similarity=0.423 Sum_probs=42.5
Q ss_pred CCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC-CcEEEEEEEecC
Q 046186 343 RNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG-AEFEWISFKTND 415 (436)
Q Consensus 343 ~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~-e~~~~l~f~~s~ 415 (436)
++-.+.||||+ -.++.||++|++.+.+ + |+ ...+++||+++||.+.+|...+.. ++++++.+.-+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~-~--~~---~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~~ 78 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI-D--GQ---EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFSP 78 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEE-T--TE---EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE--
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEE-C--CE---EEEEECCEEEEecCCccEEEecCCCCCEEEEEEEECH
Confidence 55667899997 6799999999999954 2 22 244999999999999999886554 477765554443
No 55
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.39 E-value=0.00035 Score=62.04 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=48.0
Q ss_pred CCce-ecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCC
Q 046186 76 QKGL-LLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGV 153 (436)
Q Consensus 76 pg~l-~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~ 153 (436)
.|++ .--|||. +.|++.|++| ++.+.+=-++ .....+.+||+++||||+
T Consensus 51 ~g~Vf~yHHYHs~aHEVl~vlrg----qA~l~iGG~~-------------------------G~el~v~~GDvlliPAGv 101 (163)
T COG4297 51 RGGVFNYHHYHSGAHEVLGVLRG----QAGLQIGGAD-------------------------GQELEVGEGDVLLIPAGV 101 (163)
T ss_pred cccccccccccCCcceEEEEecc----eeEEEecCCC-------------------------CceeeecCCCEEEEecCc
Confidence 3443 4568898 9999999999 9888763222 235789999999999999
Q ss_pred eEEEeccCCCcEEEEEEE
Q 046186 154 AHWCYNEGSTPVVAVVLL 171 (436)
Q Consensus 154 ~h~~~N~g~e~l~~v~~~ 171 (436)
.|.- +..+-++.++..+
T Consensus 102 GH~r-l~sS~DF~VvGaY 118 (163)
T COG4297 102 GHCR-LHSSADFQVVGAY 118 (163)
T ss_pred cccc-ccCCCCeEEEccc
Confidence 9954 4445556555533
No 56
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.37 E-value=0.0016 Score=62.84 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=53.3
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCE-EEEEeCCCcEEEEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFA-VVKRAGGAEFEWISF 411 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~-h~~~ag~e~~~~l~f 411 (436)
.|++..+.++... -+||.+-.|+.||++|+.++++ +|+. + .+++||+++||+|-. |+... ....|+..
T Consensus 156 ~m~aGf~~~~~~s---f~wtl~~dEi~YVLEGe~~l~I---dG~t-~--~l~pGDvlfIPkGs~~hf~tp--~~aRflyV 224 (233)
T PRK15457 156 SMAAGFMQWENAF---FPWTLNYDEIDMVLEGELHVRH---EGET-M--IAKAGDVMFIPKGSSIEFGTP--SSVRFLYV 224 (233)
T ss_pred ceeeEEEEEecCc---cceeccceEEEEEEEeEEEEEE---CCEE-E--EeCCCcEEEECCCCeEEecCC--CCeeEEEE
Confidence 7889999998744 3499999999999999999998 3443 3 499999999999998 55333 35555444
Q ss_pred E
Q 046186 412 K 412 (436)
Q Consensus 412 ~ 412 (436)
.
T Consensus 225 ~ 225 (233)
T PRK15457 225 A 225 (233)
T ss_pred E
Confidence 3
No 57
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.37 E-value=0.0027 Score=56.33 Aligned_cols=95 Identities=9% Similarity=0.034 Sum_probs=54.2
Q ss_pred CCeEEEEeCCCCCCccccccceEEEE-EecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCc-cEEEE
Q 046186 314 GAGHITTLNSFNLPVLRWIQLSAERG-LLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRG-QIMVV 391 (436)
Q Consensus 314 ~~G~~~~~~~~~~P~L~~l~ls~~~v-~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~G-dv~vV 391 (436)
..|.++.+...+-.... =--+..+ ...+|..+.-|+|...+++.+|++|+..+.+-+..+...|. |..- +.++|
T Consensus 14 ~RG~L~~~e~~~~ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~--L~~~~~~L~I 89 (131)
T PF05523_consen 14 ERGSLSVIERFDDIPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFI--LDEPNKGLYI 89 (131)
T ss_dssp TTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEE--E--TTEEEEE
T ss_pred CCCcEEEEeccCCCCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEE--ECCCCeEEEE
Confidence 46888888766322222 1123333 23455569999999999999999999999988766554443 5444 69999
Q ss_pred cCCCEEEEEeCCCcEEEEEEE
Q 046186 392 PQNFAVVKRAGGAEFEWISFK 412 (436)
Q Consensus 392 P~g~~h~~~ag~e~~~~l~f~ 412 (436)
|.|++|.+..-++++..|.+-
T Consensus 90 ppg~w~~~~~~s~~svlLv~a 110 (131)
T PF05523_consen 90 PPGVWHGIKNFSEDSVLLVLA 110 (131)
T ss_dssp -TT-EEEEE---TT-EEEEEE
T ss_pred CCchhhHhhccCCCcEEEEEc
Confidence 999999985555557766654
No 58
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.35 E-value=0.0019 Score=56.62 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=78.4
Q ss_pred ceeecCCcEEE-EeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCC
Q 046186 43 NRVECEAGVVE-TWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQG 121 (436)
Q Consensus 43 ~~~~se~G~~e-~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~ 121 (436)
+.|.++++..+ .+-.++ +.|+++-.-+|.+|.-...||-+-=|-+|+++| +|.+..+..
T Consensus 14 r~V~~~~w~SrRlll~~D----gmGFS~h~T~i~aGtet~~~YknHlEAvyci~G----~Gev~~~~~------------ 73 (126)
T PF06339_consen 14 RDVDAENWESRRLLLKDD----GMGFSFHETTIYAGTETHIHYKNHLEAVYCIEG----EGEVEDLDT------------ 73 (126)
T ss_pred eeEEcCCceEEEEEEccC----CCCEEEEEEEEeCCCeeEEEecCceEEEEEEec----eEEEEEccC------------
Confidence 45666655533 222222 468999999999999999999999999999999 999987632
Q ss_pred CCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186 122 GFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVAN 175 (436)
Q Consensus 122 ~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n 175 (436)
.+++.+++|.++++-+--.|++... ++++++|+|++.=
T Consensus 74 --------------G~~~~i~pGt~YaLd~hD~H~lra~--~dm~~vCVFnPpl 111 (126)
T PF06339_consen 74 --------------GEVHPIKPGTMYALDKHDRHYLRAK--TDMRLVCVFNPPL 111 (126)
T ss_pred --------------CcEEEcCCCeEEecCCCccEEEEec--CCEEEEEEcCCCC
Confidence 4589999999999999999999865 4899999998543
No 59
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=97.31 E-value=0.00069 Score=67.99 Aligned_cols=66 Identities=9% Similarity=-0.028 Sum_probs=53.6
Q ss_pred eEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcE
Q 046186 67 VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDI 146 (436)
Q Consensus 67 v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv 146 (436)
.+.+.....|..|..+|||+.-|+.||++| .+.+-+ ..+...+.+||+
T Consensus 26 ~~~~~~~~~~~~m~~~HwH~e~Ei~yv~~G----~~~~~i----------------------------~g~~~~l~~Gd~ 73 (302)
T PRK10371 26 QRLEIEFRPPHIMPTSHWHGQVEVNVPFDG----DVEYLI----------------------------NNEKVQINQGHI 73 (302)
T ss_pred ceeEEEeeCCCCCCCCCccccEEEEEecCC----cEEEEE----------------------------CCEEEEEcCCcE
Confidence 455556777888999999999999999999 877653 245789999999
Q ss_pred EEeCCCCeEEEeccCCCc
Q 046186 147 FALPAGVAHWCYNEGSTP 164 (436)
Q Consensus 147 ~~iPaG~~h~~~N~g~e~ 164 (436)
++|++|.+|.+...++..
T Consensus 74 ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 74 TLFWACTPHQLTDPGNCR 91 (302)
T ss_pred EEEecCCcccccccCCCc
Confidence 999999999876655433
No 60
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.30 E-value=0.0017 Score=59.59 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=51.8
Q ss_pred ceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC-CcEEEEEEEecC
Q 046186 345 AMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG-AEFEWISFKTND 415 (436)
Q Consensus 345 am~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~-e~~~~l~f~~s~ 415 (436)
-....|.|.. .|+-|+++|+|.+-|.+.++.- ++-.+.+||+++||+|..|....+. ..+..+=||+++
T Consensus 83 ~f~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~w-iri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~ 152 (157)
T PF03079_consen 83 KFFEEHTHED-EEVRYIVDGSGYFDVRDGDDVW-IRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDE 152 (157)
T ss_dssp HHCS-EEESS--EEEEEEECEEEEEEE-TTCEE-EEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSC
T ss_pred hhheeEecCh-heEEEEeCcEEEEEEEcCCCEE-EEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCC
Confidence 3567899965 5999999999999999877553 4456999999999999999997665 678888888664
No 61
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.29 E-value=0.0023 Score=61.85 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=53.4
Q ss_pred ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186 64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ 143 (436)
Q Consensus 64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~ 143 (436)
+..|++..+.++...+ |++++..|+.||++| +..+.+ ..+.+.+++
T Consensus 154 ~s~m~aGf~~~~~~sf--~wtl~~dEi~YVLEG----e~~l~I----------------------------dG~t~~l~p 199 (233)
T PRK15457 154 GSSMAAGFMQWENAFF--PWTLNYDEIDMVLEG----ELHVRH----------------------------EGETMIAKA 199 (233)
T ss_pred CCceeeEEEEEecCcc--ceeccceEEEEEEEe----EEEEEE----------------------------CCEEEEeCC
Confidence 3457888888887443 333459999999999 888875 135789999
Q ss_pred CcEEEeCCCCe-EEEeccCCCcEEEEEEEecC
Q 046186 144 GDIFALPAGVA-HWCYNEGSTPVVAVVLLDVA 174 (436)
Q Consensus 144 GDv~~iPaG~~-h~~~N~g~e~l~~v~~~d~~ 174 (436)
||+++||+|.. || .+.+ .+.+++++-.+
T Consensus 200 GDvlfIPkGs~~hf-~tp~--~aRflyV~~Pa 228 (233)
T PRK15457 200 GDVMFIPKGSSIEF-GTPS--SVRFLYVAWPA 228 (233)
T ss_pred CcEEEECCCCeEEe-cCCC--CeeEEEEEecC
Confidence 99999999999 66 4433 45555555433
No 62
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.19 E-value=0.0014 Score=67.06 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=62.4
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF 411 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f 411 (436)
.|.+..-.|.||....||=| ++..+.||++|+|-.++|+ |++ ++ +++||+|++|.+..|.- |.+++.+.|+.+
T Consensus 80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V~--g~~-~~--~~~gD~~~tP~w~wH~H~n~~d~~~~wld~ 153 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAVD--GER-TT--MHPGDFIITPSWTWHDHGNPGDEPMIWLDG 153 (335)
T ss_pred hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEEC--CEE-Ee--eeCCCEEEeCCCeeEecccCCCCcEEEEec
Confidence 67788889999999999999 5668999999999878886 443 44 89999999999999986 777888888655
Q ss_pred E
Q 046186 412 K 412 (436)
Q Consensus 412 ~ 412 (436)
.
T Consensus 154 l 154 (335)
T TIGR02272 154 L 154 (335)
T ss_pred C
Confidence 3
No 63
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.14 E-value=0.0016 Score=53.82 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=48.9
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEW 408 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~ 408 (436)
+..+..+++.||+..+.|+|+.. |.+|||+|+.. +.+ .++.+||.++.|.|..|...+ .+++.+
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~g~-ee~~VLeG~~~----d~~------~~~~~G~~~~~p~g~~h~~~s-~~gc~~ 86 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHPGG-EEILVLEGELS----DGD------GRYGAGDWLRLPPGSSHTPRS-DEGCLI 86 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEE----ETT------CEEETTEEEEE-TTEEEEEEE-SSCEEE
T ss_pred cCEEEEEEECCCCCcCccCCCCc-EEEEEEEEEEE----ECC------ccCCCCeEEEeCCCCccccCc-CCCEEE
Confidence 56788999999999999999655 66799999877 333 236899999999999998876 445433
No 64
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.10 E-value=0.0014 Score=64.94 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=46.3
Q ss_pred cCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCe
Q 046186 75 RQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVA 154 (436)
Q Consensus 75 ~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~ 154 (436)
.+..-..||||+.-|++||++| +|.+.+ ..+.+.+.+||+++||+|.+
T Consensus 26 ~~~~~~~~H~H~~~ei~~i~~G----~~~~~i----------------------------~~~~~~l~~g~~~~I~p~~~ 73 (290)
T PRK13501 26 YPQETFVEHTHQFCEIVIVWRG----NGLHVL----------------------------NDHPYRITCGDVFYIQAADH 73 (290)
T ss_pred CCCCCCccccccceeEEEEecC----ceEEEE----------------------------CCeeeeecCCeEEEEcCCCc
Confidence 3444467999999999999999 999875 13478999999999999999
Q ss_pred EEEeccCC
Q 046186 155 HWCYNEGS 162 (436)
Q Consensus 155 h~~~N~g~ 162 (436)
|++...++
T Consensus 74 H~~~~~~~ 81 (290)
T PRK13501 74 HSYESVHD 81 (290)
T ss_pred ccccccCC
Confidence 99876544
No 65
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.09 E-value=0.0024 Score=62.71 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=42.8
Q ss_pred ceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEE
Q 046186 78 GLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWC 157 (436)
Q Consensus 78 ~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~ 157 (436)
....||||+..|++||++| .+.+.+ ..+...+.+||++.||+|..|..
T Consensus 34 ~~~~~H~H~~~ei~~v~~G----~~~~~i----------------------------~~~~~~l~~g~l~~i~p~~~H~~ 81 (278)
T PRK10296 34 SVSGLHQHDYYEFTLVLTG----RYYQEI----------------------------NGKRVLLERGDFVFIPLGSHHQS 81 (278)
T ss_pred cCCCCcccccEEEEEEEec----eEEEEE----------------------------CCEEEEECCCcEEEeCCCCccce
Confidence 3568999999999999999 888764 23468999999999999999966
Q ss_pred ecc
Q 046186 158 YNE 160 (436)
Q Consensus 158 ~N~ 160 (436)
...
T Consensus 82 ~~~ 84 (278)
T PRK10296 82 FYE 84 (278)
T ss_pred eee
Confidence 543
No 66
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.03 E-value=0.002 Score=64.84 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=45.7
Q ss_pred CCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeE
Q 046186 76 QKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAH 155 (436)
Q Consensus 76 pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h 155 (436)
|.....+|||+.-|++||++| .|.+.+ ..+.+.+++||+++||+|..|
T Consensus 57 ~~~~~~~H~H~~~el~~v~~G----~g~~~v----------------------------~~~~~~l~~Gdl~~I~~~~~H 104 (312)
T PRK13500 57 PQDVFAEHTHDFCELVIVWRG----NGLHVL----------------------------NDRPYRITRGDLFYIHADDKH 104 (312)
T ss_pred CCCCCCccccceEEEEEEEcC----eEEEEE----------------------------CCEEEeecCCeEEEECCCCee
Confidence 444578999999999999999 998764 134689999999999999999
Q ss_pred EEeccCC
Q 046186 156 WCYNEGS 162 (436)
Q Consensus 156 ~~~N~g~ 162 (436)
.+....+
T Consensus 105 ~~~~~~~ 111 (312)
T PRK13500 105 SYASVND 111 (312)
T ss_pred cccccCC
Confidence 8776444
No 67
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=96.96 E-value=0.0069 Score=54.70 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=64.3
Q ss_pred cccccCCCCCCCcccCCC-eEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC
Q 046186 298 LRENIGDPSKADIYTQGA-GHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR 376 (436)
Q Consensus 298 ~~~Ni~~~~~~d~~~~~~-G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~ 376 (436)
+..||.. ..-|-|...| -.++.+- .-+-.++ .+.+-+-.+.||.-.++|=|. ..|+.+|++|+|...+..++++
T Consensus 11 ~Vr~ise-lpq~~ygr~GLsH~TvAG-a~~hGmk--evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~ 85 (167)
T PF02041_consen 11 LVRNISE-LPQDNYGRPGLSHITVAG-ALLHGMK--EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEK 85 (167)
T ss_dssp SEEEGGG-S--B-TT-TTEEEEEEE--HHHH--S--SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSS
T ss_pred eeEEhhh-CccccccCCCcceEEeeh-hhhcCce--eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEeccccc
Confidence 3446653 2233343233 3344443 2234556 567888899999999999994 4599999999999999987632
Q ss_pred ---eEEEEEecCccEEEEcCCCEEEE-EeCC-CcEEEEEEEecCCCCcccc
Q 046186 377 ---SVYDGEVRRGQIMVVPQNFAVVK-RAGG-AEFEWISFKTNDNAMISPL 422 (436)
Q Consensus 377 ---~~~~~~l~~Gdv~vVP~g~~h~~-~ag~-e~~~~l~f~~s~~p~~~~L 422 (436)
......+-+++.|.||-+-+|-+ |+++ |++..+... +.-|++.|+
T Consensus 86 ~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlVii-SrpPvkvf~ 135 (167)
T PF02041_consen 86 YPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVII-SRPPVKVFI 135 (167)
T ss_dssp S--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEE-ESSS--EEE
T ss_pred CCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEe-cCCCeEEEE
Confidence 23456689999999999999988 8885 899988875 444555554
No 68
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=96.93 E-value=0.0023 Score=62.86 Aligned_cols=209 Identities=19% Similarity=0.168 Sum_probs=95.4
Q ss_pred cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186 65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG 144 (436)
Q Consensus 65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G 144 (436)
.|.+..++.+.+|-..+||+|+++.-+||++| ....+ .+ ..+..-|.+|
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H~~~~~~~Vi~G----~~~~~-----~~----------------------~a~~~~l~~G 82 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIHNADYRGTVISG----ELHNG-----DP----------------------KAAAMWLPAG 82 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEESS-EEEEEEES----EEEET-----TE----------------------E-----E-TT
T ss_pred CCcceEEEEcCCCccCCCcceeeeEEEEEEEe----EEEcC-----CC----------------------cccceecCCC
Confidence 47788999999999999999999999999999 65543 11 0113579999
Q ss_pred cEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHH
Q 046186 145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRIL 224 (436)
Q Consensus 145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vL 224 (436)
.-+..|+|..|+....+++.+.++- .++- .|. ..=.
T Consensus 83 sy~~~PaG~~h~~~~~~~~~~~~~e---~g~g---------p~~--------------------------------v~p~ 118 (251)
T PF14499_consen 83 SYWFQPAGEPHITAAEGETNLLFIE---IGEG---------PYD--------------------------------VKPS 118 (251)
T ss_dssp EEEEE-TT-EEEETTS-EE-EEEEE----S------------EE------------------------------------
T ss_pred ceEeccCCCceeeeccCccEEEEEE---eCCC---------ccc--------------------------------cccc
Confidence 9999999999999887776665442 1110 111 1111
Q ss_pred hhhcCCCHHHHHHHhhcCCCceeEEEEcC-ceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccccC
Q 046186 225 AEAFNVDERLVRRLRSEKDYRGAIVTVRG-QLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIG 303 (436)
Q Consensus 225 a~af~v~~~~v~~l~~~~~~rG~Iv~~~~-~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~ 303 (436)
.+||.-.+.-+.. + +..|+-+.. +++=..-. . ....|..-+ -|..
T Consensus 119 ~~~~~~~e~p~n~-----~-~~~ivwld~~dl~W~~~~------------------~---~~~~g~~~a----~Lwg--- 164 (251)
T PF14499_consen 119 EEAFDNGERPINV-----D-KDNIVWLDASDLEWISAP------------------P---GPPPGAQIA----FLWG--- 164 (251)
T ss_dssp -----SS--TT-------G-GG-EEEEECCCS--EE-S------------------S---STT-SEEEE----EEEE---
T ss_pred ccccccccccccc-----c-cccceEeccccCCccccC------------------C---CCCCcceEE----EEec---
Confidence 1233222211111 1 224555542 22100000 0 001221110 0110
Q ss_pred CCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEe
Q 046186 304 DPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEV 383 (436)
Q Consensus 304 ~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l 383 (436)
+ +..| .+...+++|-.|-=-.+|+|+.. +=+|||+|+...++-... -...|
T Consensus 165 ---d-----~~~g----------------~~~gll~kLPagf~g~i~~h~~~-eraVvI~G~~~~~~~~~~----~~~~L 215 (251)
T PF14499_consen 165 ---D-----PNTG----------------QYTGLLLKLPAGFTGRIHTHASN-ERAVVISGELDYQSYGAS----NFGTL 215 (251)
T ss_dssp ---------TTS-----------------EE-EEEEE-SSEE--SEEE--S--EEEEEEEEEEEETTEEEE----TTEEE
T ss_pred ---C-----CCCC----------------ceeeEEEEcCCCCcCceeccCCc-eEEEEEEeEEEEeecccC----CCccc
Confidence 0 1111 24455777888888899999655 789999999999776532 23458
Q ss_pred cCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186 384 RRGQIMVVPQNFAVVKRAGGAEFEWISF 411 (436)
Q Consensus 384 ~~Gdv~vVP~g~~h~~~ag~e~~~~l~f 411 (436)
.+|.-|.-|....|-+.++++++.++.-
T Consensus 216 ~~GSYf~s~~~~~H~~~~~e~~~vlyIR 243 (251)
T PF14499_consen 216 DPGSYFGSPGHITHGIFITEDECVLYIR 243 (251)
T ss_dssp EE-TT-EE--E------EESS-EEEEEE
T ss_pred cCCcccccCCcccccccccCCCEEEEEE
Confidence 8999999999999987555555555543
No 69
>PRK13503 transcriptional activator RhaS; Provisional
Probab=96.84 E-value=0.0019 Score=62.98 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=45.6
Q ss_pred cCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCe
Q 046186 75 RQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVA 154 (436)
Q Consensus 75 ~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~ 154 (436)
.+.....+|||+..+++||++| .+.+.+ .++...+++||+++||+|..
T Consensus 23 ~~~~~~~~H~H~~~ei~~v~~G----~~~~~i----------------------------~~~~~~l~~g~~~~i~~~~~ 70 (278)
T PRK13503 23 LPQAAFPEHHHDFHEIVIVEHG----TGIHVF----------------------------NGQPYTLSGGTVCFVRDHDR 70 (278)
T ss_pred CccccccccccCceeEEEEecC----ceeeEe----------------------------cCCcccccCCcEEEECCCcc
Confidence 4556678999999999999999 888764 13468999999999999999
Q ss_pred EEEeccC
Q 046186 155 HWCYNEG 161 (436)
Q Consensus 155 h~~~N~g 161 (436)
|.+.+..
T Consensus 71 h~~~~~~ 77 (278)
T PRK13503 71 HLYEHTD 77 (278)
T ss_pred chhhhcc
Confidence 9876653
No 70
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=96.84 E-value=0.0021 Score=51.41 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=40.7
Q ss_pred ceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEE
Q 046186 334 LSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVV 398 (436)
Q Consensus 334 ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~ 398 (436)
+++..-.-+||.+. -++ ..+|+.||++|++.++.- +|.. .++++||+|++|+|+...
T Consensus 7 ~~~g~w~~~pg~~~-~~~--~~~E~~~vleG~v~it~~--~G~~---~~~~aGD~~~~p~G~~~~ 63 (74)
T PF05899_consen 7 FSAGVWECTPGKFP-WPY--PEDEFFYVLEGEVTITDE--DGET---VTFKAGDAFFLPKGWTGT 63 (74)
T ss_dssp EEEEEEEEECEEEE-EEE--SSEEEEEEEEEEEEEEET--TTEE---EEEETTEEEEE-TTEEEE
T ss_pred EEEEEEEECCceeE-eeC--CCCEEEEEEEeEEEEEEC--CCCE---EEEcCCcEEEECCCCEEE
Confidence 45556666776643 234 349999999999988843 5655 349999999999999643
No 71
>PRK13502 transcriptional activator RhaR; Provisional
Probab=96.79 E-value=0.0038 Score=61.29 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=46.7
Q ss_pred EecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCC
Q 046186 73 TIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAG 152 (436)
Q Consensus 73 ~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG 152 (436)
...|+-...+|||+.-+++||++| ++.+.+ ..+.+.+++||+++||+|
T Consensus 24 ~~~~~~~~~~H~h~~~~l~~v~~G----~~~~~i----------------------------~~~~~~l~~g~l~li~~~ 71 (282)
T PRK13502 24 DRYPQDVFAEHTHEFCELVMVWRG----NGLHVL----------------------------NERPYRITRGDLFYIRAE 71 (282)
T ss_pred cCCCCCCCCccccceEEEEEEecC----cEEEEE----------------------------CCEEEeecCCcEEEECCC
Confidence 334444478999999999999999 888874 245799999999999999
Q ss_pred CeEEEeccCC
Q 046186 153 VAHWCYNEGS 162 (436)
Q Consensus 153 ~~h~~~N~g~ 162 (436)
.+|.+...++
T Consensus 72 ~~H~~~~~~~ 81 (282)
T PRK13502 72 DKHSYTSVND 81 (282)
T ss_pred CcccccccCC
Confidence 9998765443
No 72
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=96.79 E-value=0.006 Score=48.70 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=41.6
Q ss_pred eEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcE
Q 046186 67 VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDI 146 (436)
Q Consensus 67 v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv 146 (436)
+++..-..+||.+.. +|. ..|++||++| +..+..- .....++++||+
T Consensus 7 ~~~g~w~~~pg~~~~-~~~-~~E~~~vleG----~v~it~~---------------------------~G~~~~~~aGD~ 53 (74)
T PF05899_consen 7 FSAGVWECTPGKFPW-PYP-EDEFFYVLEG----EVTITDE---------------------------DGETVTFKAGDA 53 (74)
T ss_dssp EEEEEEEEECEEEEE-EES-SEEEEEEEEE----EEEEEET---------------------------TTEEEEEETTEE
T ss_pred EEEEEEEECCceeEe-eCC-CCEEEEEEEe----EEEEEEC---------------------------CCCEEEEcCCcE
Confidence 455566677876432 333 4999999999 8888731 234689999999
Q ss_pred EEeCCCCeEEE
Q 046186 147 FALPAGVAHWC 157 (436)
Q Consensus 147 ~~iPaG~~h~~ 157 (436)
+++|+|..-.+
T Consensus 54 ~~~p~G~~~~w 64 (74)
T PF05899_consen 54 FFLPKGWTGTW 64 (74)
T ss_dssp EEE-TTEEEEE
T ss_pred EEECCCCEEEE
Confidence 99999986554
No 73
>PRK13500 transcriptional activator RhaR; Provisional
Probab=96.76 E-value=0.005 Score=61.95 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=43.8
Q ss_pred cCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCC
Q 046186 342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGA 404 (436)
Q Consensus 342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e 404 (436)
.|.....+|||. ..|++||++|+|...+=+ -...+.+||+++||.+-+|.....++
T Consensus 56 ~~~~~~~~H~H~-~~el~~v~~G~g~~~v~~------~~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 56 YPQDVFAEHTHD-FCELVIVWRGNGLHVLND------RPYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCCccccc-eEEEEEEEcCeEEEEECC------EEEeecCCeEEEECCCCeecccccCC
Confidence 344457899995 789999999999976543 23459999999999999998755433
No 74
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=96.70 E-value=0.014 Score=51.23 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=68.5
Q ss_pred cccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEE
Q 046186 331 WIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWIS 410 (436)
Q Consensus 331 ~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~ 410 (436)
.+|+|+-...|.+|.-...||- |=-|-+||++|+|.++.++. |.. ..+++|.++..-+.=.|...|.. +|..+|
T Consensus 32 gmGFS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~~-G~~---~~i~pGt~YaLd~hD~H~lra~~-dm~~vC 105 (126)
T PF06339_consen 32 GMGFSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLDT-GEV---HPIKPGTMYALDKHDRHYLRAKT-DMRLVC 105 (126)
T ss_pred CCCEEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEccC-CcE---EEcCCCeEEecCCCccEEEEecC-CEEEEE
Confidence 4699999999999999888883 56699999999999999863 443 34999999999999899999887 899999
Q ss_pred EEecCCC
Q 046186 411 FKTNDNA 417 (436)
Q Consensus 411 f~~s~~p 417 (436)
.|+-+-.
T Consensus 106 VFnPplt 112 (126)
T PF06339_consen 106 VFNPPLT 112 (126)
T ss_pred EcCCCCc
Confidence 9965543
No 75
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=96.65 E-value=0.004 Score=61.16 Aligned_cols=61 Identities=13% Similarity=0.017 Sum_probs=47.9
Q ss_pred CCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCe
Q 046186 76 QKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVA 154 (436)
Q Consensus 76 pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~ 154 (436)
-+....||||+ .-+++||++| .+.+.+ ..+...+++||++++|+|.+
T Consensus 32 ~~~~~~~H~H~~~~~l~~~~~G----~~~~~~----------------------------~~~~~~l~~g~~~ii~~~~~ 79 (287)
T TIGR02297 32 FGRNMPVHFHDRYYQLHYLTEG----SIALQL----------------------------DEHEYSEYAPCFFLTPPSVP 79 (287)
T ss_pred cCCCCCCcccccceeEEEEeeC----ceEEEE----------------------------CCEEEEecCCeEEEeCCCCc
Confidence 34568999998 6999999999 888764 13468999999999999999
Q ss_pred EEEeccCCCcEEEE
Q 046186 155 HWCYNEGSTPVVAV 168 (436)
Q Consensus 155 h~~~N~g~e~l~~v 168 (436)
|.+....+....++
T Consensus 80 H~~~~~~~~~~~~i 93 (287)
T TIGR02297 80 HGFVTDLDADGHVL 93 (287)
T ss_pred cccccCCCcceEEE
Confidence 99876554433333
No 76
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=96.61 E-value=0.034 Score=51.82 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=55.3
Q ss_pred CCceecccccCCC-cEEEEEEeeeEEEEEEeCCCCe-----EEEEEecCc--cEEEEcCCCEEEEEeCCCcEEEEEEEe
Q 046186 343 RNAMMVPHWNLNA-HSIMYAISGSCHVQVVDSYGRS-----VYDGEVRRG--QIMVVPQNFAVVKRAGGAEFEWISFKT 413 (436)
Q Consensus 343 ~gam~~PHwh~~A-~ei~yV~~G~grv~vv~~~G~~-----~~~~~l~~G--dv~vVP~g~~h~~~ag~e~~~~l~f~~ 413 (436)
+|-+|..|||..- .+++.|++|++..-.||-.-.. ..-..+.+- .++.||.||+|=..+.++..+++-.-+
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~ 132 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVT 132 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEec
Confidence 9999999999998 9999999999999999976322 333345544 899999999998866665555544433
No 77
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=96.54 E-value=0.0063 Score=61.09 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=44.2
Q ss_pred EEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186 339 GLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA 401 (436)
Q Consensus 339 v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a 401 (436)
-.-.+..|..+||| +--|+.|+++|++.+.+=+ + ...+.+||+++||.+-+|....
T Consensus 31 ~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i~g---~---~~~l~~Gd~ili~s~~~H~~~~ 86 (302)
T PRK10371 31 EFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLINN---E---KVQINQGHITLFWACTPHQLTD 86 (302)
T ss_pred EeeCCCCCCCCCcc-ccEEEEEecCCcEEEEECC---E---EEEEcCCcEEEEecCCcccccc
Confidence 34557788999999 4559999999998776532 3 2349999999999999998644
No 78
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.53 E-value=0.016 Score=53.50 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=55.0
Q ss_pred ccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC-CCcEEEEEEEecCC
Q 046186 349 PHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG-GAEFEWISFKTNDN 416 (436)
Q Consensus 349 PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag-~e~~~~l~f~~s~~ 416 (436)
=|.| .+.|+.|++.|+|.+.|..++|.. +.-.+.+||++.||.|--|+.--+ +..++.|=+|+.+.
T Consensus 90 EH~H-~d~EvRy~vaG~GiF~v~~~d~~~-~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~ 156 (181)
T COG1791 90 EHLH-TDDEVRYFVAGEGIFDVHSPDGKV-YQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE 156 (181)
T ss_pred Hhcc-CCceEEEEEecceEEEEECCCCcE-EEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence 4777 567999999999999999998765 666789999999999999988444 46788888887654
No 79
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=96.52 E-value=0.0086 Score=58.88 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=45.8
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC-CCcEEEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG-GAEFEWIS 410 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag-~e~~~~l~ 410 (436)
|.+..+|++.+|=...|||| ++++-+|||+|..... +.+.-..-|.+|.-++.|+|.+|+.-+. ++.+.|+.
T Consensus 35 g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~-----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e 107 (251)
T PF14499_consen 35 GPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG-----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIE 107 (251)
T ss_dssp S-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET-----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE
T ss_pred CcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC-----CCcccceecCCCceEeccCCCceeeeccCccEEEEEE
Confidence 78889999999999999999 6789999999975542 2333344599999999999999987444 35576663
No 80
>PRK13502 transcriptional activator RhaR; Provisional
Probab=96.50 E-value=0.0096 Score=58.44 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=44.4
Q ss_pred EecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC
Q 046186 340 LLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG 403 (436)
Q Consensus 340 ~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~ 403 (436)
...|.-...+|||. ..++.||++|++++.+=+ + ...+.+||+++||.+-+|.....+
T Consensus 24 ~~~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~~---~---~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 24 DRYPQDVFAEHTHE-FCELVMVWRGNGLHVLNE---R---PYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred cCCCCCCCCccccc-eEEEEEEecCcEEEEECC---E---EEeecCCcEEEECCCCcccccccC
Confidence 33444457899995 789999999999988632 2 234999999999999999875543
No 81
>PRK13501 transcriptional activator RhaR; Provisional
Probab=96.47 E-value=0.0076 Score=59.65 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=40.0
Q ss_pred eecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186 346 MMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA 401 (436)
Q Consensus 346 m~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a 401 (436)
-..|||| +-.|+.||++|++.+.| + |.. ..+.+||+++||.+.+|....
T Consensus 30 ~~~~H~H-~~~ei~~i~~G~~~~~i-~--~~~---~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 30 TFVEHTH-QFCEIVIVWRGNGLHVL-N--DHP---YRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred CCccccc-cceeEEEEecCceEEEE-C--Cee---eeecCCeEEEEcCCCcccccc
Confidence 3569999 57799999999999986 2 232 349999999999999998743
No 82
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.46 E-value=0.035 Score=51.84 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=54.8
Q ss_pred cCCceecccccCC--CcEEEEEEeeeEEEEEEeCCCC-----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186 342 HRNAMMVPHWNLN--AHSIMYAISGSCHVQVVDSYGR-----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISFK 412 (436)
Q Consensus 342 ~~gam~~PHwh~~--A~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f~ 412 (436)
.+|.+|..|+|.. -+++++|++|....=+||..-. +....+|.+ +..++||.|++|-..+-+++..++-+-
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~ 131 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC 131 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence 6799999999954 4799999999999999998532 234445666 669999999999886655555554443
Q ss_pred e
Q 046186 413 T 413 (436)
Q Consensus 413 ~ 413 (436)
+
T Consensus 132 ~ 132 (176)
T TIGR01221 132 T 132 (176)
T ss_pred C
Confidence 3
No 83
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=96.41 E-value=0.0094 Score=58.47 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=39.7
Q ss_pred ceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE
Q 046186 345 AMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK 399 (436)
Q Consensus 345 am~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~ 399 (436)
....|||| +..|+.||++|++.+.+ +|+. + .+.+||+++||.|..|..
T Consensus 34 ~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~~-~--~l~~g~l~~i~p~~~H~~ 81 (278)
T PRK10296 34 SVSGLHQH-DYYEFTLVLTGRYYQEI---NGKR-V--LLERGDFVFIPLGSHHQS 81 (278)
T ss_pred cCCCCccc-ccEEEEEEEeceEEEEE---CCEE-E--EECCCcEEEeCCCCccce
Confidence 35579999 57799999999999877 3333 3 599999999999999965
No 84
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.40 E-value=0.019 Score=52.00 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=43.7
Q ss_pred EEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeC
Q 046186 71 RHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALP 150 (436)
Q Consensus 71 r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iP 150 (436)
.+.=.|+.-.--|+.+++|++|-++| ...+.++..| ..|...+++||+|.+|
T Consensus 37 mvVGGPN~R~DyHine~eE~FyQ~kG----~m~Lkv~e~g------------------------~~kdi~I~EGe~fLLP 88 (151)
T PF06052_consen 37 MVVGGPNQRTDYHINETEEFFYQLKG----DMCLKVVEDG------------------------KFKDIPIREGEMFLLP 88 (151)
T ss_dssp EEEESSB--SSEEE-SS-EEEEEEES-----EEEEEEETT------------------------EEEEEEE-TTEEEEE-
T ss_pred EEEcCCCCCCccccCCcceEEEEEeC----cEEEEEEeCC------------------------ceEEEEeCCCcEEecC
Confidence 45556777777788889999999999 9999988653 2346899999999999
Q ss_pred CCCeEEEeccCCC
Q 046186 151 AGVAHWCYNEGST 163 (436)
Q Consensus 151 aG~~h~~~N~g~e 163 (436)
++++|.-.-..++
T Consensus 89 ~~vpHsP~R~~~t 101 (151)
T PF06052_consen 89 ANVPHSPQRPADT 101 (151)
T ss_dssp TT--EEEEE-TT-
T ss_pred CCCCCCCcCCCCc
Confidence 9999998765444
No 85
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.33 E-value=0.029 Score=52.41 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=55.1
Q ss_pred cCCceecccccCCC---cEEEEEEeeeEEEEEEeCCCC-----eEEEEEecCcc--EEEEcCCCEEEEEeCCCcEEEEEE
Q 046186 342 HRNAMMVPHWNLNA---HSIMYAISGSCHVQVVDSYGR-----SVYDGEVRRGQ--IMVVPQNFAVVKRAGGAEFEWISF 411 (436)
Q Consensus 342 ~~gam~~PHwh~~A---~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~Gd--v~vVP~g~~h~~~ag~e~~~~l~f 411 (436)
.+|-+|.+|+|..- +++++|++|+...=+||-.-. +.....|.+++ .++||+|++|-..+-+++..++..
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 45999999999886 789999999999999996421 24566677765 899999999988777666665554
Q ss_pred Eec
Q 046186 412 KTN 414 (436)
Q Consensus 412 ~~s 414 (436)
-++
T Consensus 131 ~t~ 133 (176)
T PF00908_consen 131 VTN 133 (176)
T ss_dssp ESS
T ss_pred cCC
Confidence 443
No 86
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=96.32 E-value=0.009 Score=58.66 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=42.4
Q ss_pred CceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC
Q 046186 344 NAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG 402 (436)
Q Consensus 344 gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag 402 (436)
+....||||..-.++.|+++|.+.+.+= |. ...+.+||+++||.+-+|.....
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~---~~---~~~l~~g~~~ii~~~~~H~~~~~ 85 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLD---EH---EYSEYAPCFFLTPPSVPHGFVTD 85 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEEC---CE---EEEecCCeEEEeCCCCccccccC
Confidence 4568899997678999999999986653 22 34599999999999999987543
No 87
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=96.11 E-value=0.11 Score=54.45 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=33.6
Q ss_pred CCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC
Q 046186 354 NAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG 403 (436)
Q Consensus 354 ~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~ 403 (436)
....|+.|++|++.+. + .|.. + .|++|++++||++...+...++
T Consensus 338 ~~~~Illv~~G~~~i~--~-~~~~-~--~l~~G~~~fipa~~~~~~~~g~ 381 (389)
T PRK15131 338 QSAAILFCVEGEAVLW--K-GEQQ-L--TLKPGESAFIAANESPVTVSGH 381 (389)
T ss_pred CCcEEEEEEcceEEEE--e-CCeE-E--EECCCCEEEEeCCCccEEEecc
Confidence 4569999999999885 2 2333 3 4999999999999877665554
No 88
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=96.05 E-value=0.026 Score=54.28 Aligned_cols=71 Identities=8% Similarity=0.082 Sum_probs=57.1
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC-CcEEEEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG-AEFEWISF 411 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~-e~~~~l~f 411 (436)
+..+..+++.||+-+..|.| ...|+.+|++|.- .+.. ..+.+||++..|.+..|...+.. +++..++.
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f----~de~------g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v 194 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAF----SDET------GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAV 194 (215)
T ss_pred CcEEEEEEECCCCccCCCcC-CCcEEEEEEEEEE----EcCC------CccCCCeEEECCCCCCcCcccCCCCCeEEEEE
Confidence 35678999999999999999 6669999999994 3432 23789999999999999986664 66877776
Q ss_pred Eec
Q 046186 412 KTN 414 (436)
Q Consensus 412 ~~s 414 (436)
...
T Consensus 195 ~da 197 (215)
T TIGR02451 195 LDA 197 (215)
T ss_pred ecC
Confidence 543
No 89
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.01 E-value=0.038 Score=58.08 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=18.7
Q ss_pred ecCCceecccccCCC-cEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEE
Q 046186 341 LHRNAMMVPHWNLNA-HSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVV 398 (436)
Q Consensus 341 L~~gam~~PHwh~~A-~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~ 398 (436)
...+.++.|.+|.|- +|.++.+.|.-...- ..+.+|.+=.=|.+.+|=
T Consensus 316 v~e~tfrpPyyHrNv~sE~mg~i~G~y~a~~----------~gf~pGg~SLH~~~~pHG 364 (424)
T PF04209_consen 316 VAEHTFRPPYYHRNVMSEFMGLIRGNYDASR----------DGFEPGGISLHPCGTPHG 364 (424)
T ss_dssp --TTS--S---B--SSEEEEEEEE---------------------TT-EEEE-TT--B-
T ss_pred ccCCCccCCCCCcceeeeeeeeecccccccc----------CCcCCCceeccCCCCCCC
Confidence 445899999999994 577777777643321 237799999999999885
No 90
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=95.99 E-value=0.017 Score=50.31 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=32.6
Q ss_pred ccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEE
Q 046186 351 WNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVV 398 (436)
Q Consensus 351 wh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~ 398 (436)
|+-..+|..|+++|++.++ ..+|+. .. +++||+||||+||.-.
T Consensus 59 ~~y~~~E~chil~G~v~~T--~d~Ge~-v~--~~aGD~~~~~~G~~g~ 101 (116)
T COG3450 59 VTYDEDEFCHILEGRVEVT--PDGGEP-VE--VRAGDSFVFPAGFKGT 101 (116)
T ss_pred EEcccceEEEEEeeEEEEE--CCCCeE-EE--EcCCCEEEECCCCeEE
Confidence 3334689999999988776 333554 43 9999999999999743
No 91
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=95.95 E-value=0.043 Score=50.03 Aligned_cols=71 Identities=8% Similarity=0.072 Sum_probs=48.6
Q ss_pred ceEEEEEEecCCceecCeee-cCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186 66 GVAVVRHTIRQKGLLLPQFS-NSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG 144 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~Ph~h-~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G 144 (436)
.|++..++|+... .-|. +.+|+-||++| +..+.+ . .++...++|
T Consensus 76 ~l~~Gf~~le~~~---f~wtl~YDEi~~VlEG----~L~i~~--~--------------------------G~~~~A~~G 120 (152)
T PF06249_consen 76 RLSAGFMELEKTS---FPWTLTYDEIKYVLEG----TLEISI--D--------------------------GQTVTAKPG 120 (152)
T ss_dssp SSEEEEEEEEEEE---EEEE-SSEEEEEEEEE----EEEEEE--T--------------------------TEEEEEETT
T ss_pred ceeeEEEEEeCCC---ccEEeecceEEEEEEe----EEEEEE--C--------------------------CEEEEEcCC
Confidence 4777778888732 3465 59999999999 766652 1 357899999
Q ss_pred cEEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186 145 DIFALPAGVAHWCYNEGSTPVVAVVLLDV 173 (436)
Q Consensus 145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~ 173 (436)
||++||+|..--+.- ...+.++.+..+
T Consensus 121 Dvi~iPkGs~I~fst--~~~a~~~Yv~yP 147 (152)
T PF06249_consen 121 DVIFIPKGSTITFST--PDYARFFYVTYP 147 (152)
T ss_dssp -EEEE-TT-EEEEEE--EEEEEEEEEEES
T ss_pred cEEEECCCCEEEEec--CCCEEEEEEECC
Confidence 999999998876633 235666666553
No 92
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=95.89 E-value=0.038 Score=50.41 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=43.5
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKR 400 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ 400 (436)
.|++..+.|+.. ..-|.-+=+|+-||++|+..+. + +|++ +. .++|||++||+|--....
T Consensus 76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~--~-~G~~-~~--A~~GDvi~iPkGs~I~fs 134 (152)
T PF06249_consen 76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEIS--I-DGQT-VT--AKPGDVIFIPKGSTITFS 134 (152)
T ss_dssp SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEE--E-TTEE-EE--EETT-EEEE-TT-EEEEE
T ss_pred ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEE--E-CCEE-EE--EcCCcEEEECCCCEEEEe
Confidence 688999999874 4569999999999999987665 3 3665 44 689999999999765553
No 93
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=95.86 E-value=0.036 Score=50.30 Aligned_cols=68 Identities=26% Similarity=0.507 Sum_probs=50.1
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWI 409 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l 409 (436)
.|++..+...+ ..--|..+=+|+.||++|+..|.+- |.++. -.+|||++||+|--.-+ ..++-.+.|+
T Consensus 99 ~l~aG~m~~~~---~tf~wtl~yDe~d~VlEGrL~V~~~---g~tv~---a~aGDvifiPKgssIefst~gea~flyv 167 (176)
T COG4766 99 RLGAGLMEMKN---TTFPWTLNYDEIDYVLEGRLHVRID---GRTVI---AGAGDVIFIPKGSSIEFSTTGEAKFLYV 167 (176)
T ss_pred ccccceeeecc---ccCcceecccceeEEEeeeEEEEEc---CCeEe---cCCCcEEEecCCCeEEEeccceEEEEEE
Confidence 56777778777 5556888999999999999888764 45543 47999999999988666 3333333333
No 94
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.77 E-value=0.06 Score=51.24 Aligned_cols=66 Identities=11% Similarity=0.196 Sum_probs=49.0
Q ss_pred EEEEEecC-CceecccccCCCcEEEEEEeeeEEEEEEeCCC----------------------------------CeEEE
Q 046186 336 AERGLLHR-NAMMVPHWNLNAHSIMYAISGSCHVQVVDSYG----------------------------------RSVYD 380 (436)
Q Consensus 336 ~~~v~L~~-gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G----------------------------------~~~~~ 380 (436)
...+-|.+ |+....|+.+ .+-|..++.|+=++.++.|.- ...+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 44566655 7788899988 678999999999999999841 02578
Q ss_pred EEecCccEEEEcCCCEEEEEeC
Q 046186 381 GEVRRGQIMVVPQNFAVVKRAG 402 (436)
Q Consensus 381 ~~l~~Gdv~vVP~g~~h~~~ag 402 (436)
.+|++||+++||.||.|.+.+.
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENL 232 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEES
T ss_pred EEECCCeEEEECCCCeEEEEEc
Confidence 8899999999999999999666
No 95
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=95.68 E-value=0.14 Score=45.35 Aligned_cols=95 Identities=15% Similarity=0.005 Sum_probs=50.8
Q ss_pred eecCCcEEEEeCCC-CccccccceEEEEEE-ecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCC
Q 046186 45 VECEAGVVETWDPG-HEQFQCAGVAVVRHT-IRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQG 121 (436)
Q Consensus 45 ~~se~G~~e~~~~~-~p~l~~~gv~~~r~~-i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~ 121 (436)
+..+-|.+.+.... ...+.- -++..+. ..+|.....|+|. ..++++|++| +..+.+-+..
T Consensus 11 ~~D~RG~L~~~e~~~~ipf~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~G----s~~v~~~d~~----------- 73 (131)
T PF05523_consen 11 ISDERGSLSVIERFDDIPFEI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSG----SFKVVLDDGR----------- 73 (131)
T ss_dssp EEETTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-----EEEEEE-SS-----------
T ss_pred eeCCCCcEEEEeccCCCCCCc--cEEEEEEcCCCCCcccccccccccEEEEEEeC----EEEEEEecCC-----------
Confidence 55667876555433 222321 2344443 4444459999998 9999999999 8888753221
Q ss_pred CCCccCCcccccccceeeeeccC-cEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186 122 GFGESAGRSQQDSHQKIRRFRQG-DIFALPAGVAHWCYNEGSTPVVAVVL 170 (436)
Q Consensus 122 ~~~~~~~~~~~d~~~k~~~l~~G-Dv~~iPaG~~h~~~N~g~e~l~~v~~ 170 (436)
..+...|..- ..+.||+|+.|-+.|.++. ++++.+
T Consensus 74 -------------~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~ 109 (131)
T PF05523_consen 74 -------------EEEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVL 109 (131)
T ss_dssp --------------EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEEE
T ss_pred -------------CcEEEEECCCCeEEEECCchhhHhhccCCC-cEEEEE
Confidence 1235666554 5999999999999998766 665553
No 96
>PRK13503 transcriptional activator RhaS; Provisional
Probab=95.44 E-value=0.028 Score=54.79 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=42.5
Q ss_pred cCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC
Q 046186 342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG 402 (436)
Q Consensus 342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag 402 (436)
.+.....+||| +..|++||++|.+.+.+=+. ...+++||+++||.+-+|...+.
T Consensus 23 ~~~~~~~~H~H-~~~ei~~v~~G~~~~~i~~~------~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 23 LPQAAFPEHHH-DFHEIVIVEHGTGIHVFNGQ------PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred Ccccccccccc-CceeEEEEecCceeeEecCC------cccccCCcEEEECCCccchhhhc
Confidence 34456789999 66799999999999876542 23499999999999999976333
No 97
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.29 E-value=0.031 Score=55.88 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=72.6
Q ss_pred cccccccC-CCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCC
Q 046186 33 INNLEALE-PNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGY 111 (436)
Q Consensus 33 ~~~l~a~e-P~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~ 111 (436)
+++|..++ |+. -+|-.+++.++..-+---.-|++...-|.||....+|-|....|+=|.+| +|.+-|
T Consensus 229 L~~la~~e~~dp---~dG~~~ryvNP~TGg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eG----sg~~~I----- 296 (351)
T COG3435 229 LERLARLEEPDP---FDGYKMRYVNPVTGGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEG----SGYTII----- 296 (351)
T ss_pred HHHHHhccCCCC---CCcceEEEecCCCCCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEec----ceeEEE-----
Confidence 34555544 432 24555677664321111123455566788888999999999999999999 998865
Q ss_pred CCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186 112 PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLD 172 (436)
Q Consensus 112 ~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d 172 (436)
..+.+...+||+|+||.=.-|-..|. .++++++|+-|
T Consensus 297 -----------------------g~~rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsfsD 333 (351)
T COG3435 297 -----------------------GGERFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSFSD 333 (351)
T ss_pred -----------------------CCEEeeccCCCEEEccCcceeecccC-CcceEEEecCC
Confidence 13468999999999999888877774 67788877544
No 98
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=95.26 E-value=0.32 Score=49.01 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=33.1
Q ss_pred CCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC
Q 046186 353 LNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG 403 (436)
Q Consensus 353 ~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~ 403 (436)
.+...+++|++|++++.. .+. ...|++|+.++||++...+...++
T Consensus 251 ~~~~~il~v~~G~~~i~~---~~~---~~~l~~G~~~~ipa~~~~~~i~g~ 295 (302)
T TIGR00218 251 QQSALILSVLEGSGRIKS---GGK---TLPLKKGESFFIPAHLGPFTIEGE 295 (302)
T ss_pred CCCcEEEEEEcceEEEEE---CCE---EEEEecccEEEEccCCccEEEEee
Confidence 346789999999998852 222 234899999999999865555443
No 99
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.24 E-value=0.11 Score=52.85 Aligned_cols=74 Identities=9% Similarity=0.170 Sum_probs=49.6
Q ss_pred ceEEEEEecCCc--eecccccCCCcEEEEEEeeeEEEEEEeCCC-----------------CeEEEEEecCccEEEEcCC
Q 046186 334 LSAERGLLHRNA--MMVPHWNLNAHSIMYAISGSCHVQVVDSYG-----------------RSVYDGEVRRGQIMVVPQN 394 (436)
Q Consensus 334 ls~~~v~L~~ga--m~~PHwh~~A~ei~yV~~G~grv~vv~~~G-----------------~~~~~~~l~~Gdv~vVP~g 394 (436)
...+.+.++|++ =+.|||-.. +-++.=+.|+=+.+|..+.. ...++.+|++|||+|||+|
T Consensus 113 ~~~~n~Y~tp~g~~g~~~H~D~~-dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG 191 (319)
T PF08007_consen 113 PVGANAYLTPPGSQGFGPHYDDH-DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRG 191 (319)
T ss_dssp -EEEEEEEETSSBEESECEE-SS-EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT
T ss_pred ccceEEEecCCCCCCccCEECCc-ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCC
Confidence 356678899999 999999853 35556688888899988421 1256788999999999999
Q ss_pred CEEEEEeCCCcEEE
Q 046186 395 FAVVKRAGGAEFEW 408 (436)
Q Consensus 395 ~~h~~~ag~e~~~~ 408 (436)
++|.-.+.+..+.+
T Consensus 192 ~~H~~~~~~~S~hl 205 (319)
T PF08007_consen 192 WWHQAVTTDPSLHL 205 (319)
T ss_dssp -EEEEEESS-EEEE
T ss_pred ccCCCCCCCCceEE
Confidence 99998776655555
No 100
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=95.03 E-value=0.091 Score=47.63 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=35.3
Q ss_pred cCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE
Q 046186 342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK 399 (436)
Q Consensus 342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~ 399 (436)
.||.=.-=|.++ +-||.|-++|...+.|++. |.. -+-.+++||+|..|.+-||.=
T Consensus 41 GPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~-g~~-kdi~I~EGe~fLLP~~vpHsP 95 (151)
T PF06052_consen 41 GPNQRTDYHINE-TEEFFYQLKGDMCLKVVED-GKF-KDIPIREGEMFLLPANVPHSP 95 (151)
T ss_dssp SSB--SSEEE-S-S-EEEEEEES-EEEEEEET-TEE-EEEEE-TTEEEEE-TT--EEE
T ss_pred CCCCCCccccCC-cceEEEEEeCcEEEEEEeC-Cce-EEEEeCCCcEEecCCCCCCCC
Confidence 344433334442 4589999999999999995 443 466799999999999999985
No 101
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=94.88 E-value=0.14 Score=49.28 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=60.7
Q ss_pred EEEEeCCCCCCccccccceEEEEEecCCceeccc-ccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCC
Q 046186 317 HITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPH-WNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF 395 (436)
Q Consensus 317 ~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PH-wh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~ 395 (436)
+.+.++++++. -||-+..+.+.|||...=- .|--- .=+||++|++.-..=. . --.|++||.+..=+..
T Consensus 169 ~attv~P~d~r----~Dmhv~ivsFePGa~ip~aEtHvmE-HGlyvLeGk~vYrLn~----d--wv~V~aGD~mwm~A~c 237 (264)
T COG3257 169 IATTVLPKELR----FDMHVHIVSFEPGASIPYAETHVME-HGLYVLEGKGVYRLNN----N--WVPVEAGDYIWMGAYC 237 (264)
T ss_pred EEEeeCccccC----cceEEEEEEecCCcccchhhhhhhh-cceEEEecceEEeecC----c--eEEeecccEEEeeccC
Confidence 34445555542 3888999999999875321 22222 2489999999776532 1 2359999999999999
Q ss_pred EEEEEeC-CCcEEEEEEEecCC
Q 046186 396 AVVKRAG-GAEFEWISFKTNDN 416 (436)
Q Consensus 396 ~h~~~ag-~e~~~~l~f~~s~~ 416 (436)
|-+--|+ ...+.+|.++.-.+
T Consensus 238 pQacyagG~g~frYLlyKDvNR 259 (264)
T COG3257 238 PQACYAGGRGAFRYLLYKDVNR 259 (264)
T ss_pred hhhhccCCCCceEEEEEecccc
Confidence 9776555 57888888875443
No 102
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=94.56 E-value=0.054 Score=49.73 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=45.4
Q ss_pred ceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186 345 AMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA 401 (436)
Q Consensus 345 am~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a 401 (436)
..+++|-|+.. ||-||+.|+|..-|-+-+++= +.--++.||++|+|+|--|-...
T Consensus 84 ~FfEEhlh~de-eiR~il~GtgYfDVrd~dd~W-IRi~vekGDlivlPaGiyHRFTt 138 (179)
T KOG2107|consen 84 SFFEEHLHEDE-EIRYILEGTGYFDVRDKDDQW-IRIFVEKGDLIVLPAGIYHRFTT 138 (179)
T ss_pred HHHHHhcCchh-heEEEeecceEEeeccCCCCE-EEEEEecCCEEEecCcceeeeec
Confidence 46889999765 999999999999999988653 44448999999999998876533
No 103
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=94.56 E-value=0.29 Score=45.72 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=61.3
Q ss_pred cCCCceeecCCcE-EEEeCCC-Cc--cccccce-EEEEEEecCCceecCeeecCC----ceEEEEecccceEEEEEeeCC
Q 046186 39 LEPNNRVECEAGV-VETWDPG-HE--QFQCAGV-AVVRHTIRQKGLLLPQFSNSP----QLVYILQAYTYRRGSHGDPFP 109 (436)
Q Consensus 39 ~eP~~~~~se~G~-~e~~~~~-~p--~l~~~gv-~~~r~~i~pg~l~~Ph~h~a~----ei~yV~~G~~~~~g~~g~v~p 109 (436)
.+|. ++.-+-|. +|.+..+ +. .+.. .+ -...-.-.+|.+..+||+..+ ++++|++| +...-+|+.
T Consensus 12 i~~~-~~~D~RG~f~e~f~~~~~~~~~~~~-~~~q~n~S~s~~gvlRGlH~q~~~~~q~Klv~~~~G----~i~dV~vDl 85 (176)
T PF00908_consen 12 IEPK-VFPDERGYFMETFREDEFAEAGLPP-EFVQDNISVSKKGVLRGLHYQSPPYAQAKLVRCLRG----EIFDVAVDL 85 (176)
T ss_dssp EEEE-EEEETTEEEEEEEEHHHHHHHHSST--EEEEEEEEEETTBEEEEEEESTTT-EEEEEEEEES----EEEEEEEE-
T ss_pred EECc-eeccCCEeEehHhhhHHHHHhcccc-ccCceEEEEccccEEEEEEEecCCCCCCcEEEEecC----eEEEEEEEC
Confidence 4443 35556665 5777643 11 1111 11 122223345889999999854 99999999 888777763
Q ss_pred --CCCCcccCCCCCCCCccCCcccccccce--eeeeccCc--EEEeCCCCeEEEeccCCCcE
Q 046186 110 --GYPETYQSPQQGGFGESAGRSQQDSHQK--IRRFRQGD--IFALPAGVAHWCYNEGSTPV 165 (436)
Q Consensus 110 --g~~et~~~~~~~~~~~~~~~~~~d~~~k--~~~l~~GD--v~~iPaG~~h~~~N~g~e~l 165 (436)
+.| || .+ ...|.+.+ .++||+|++|-.++..++-.
T Consensus 86 R~~Sp-Tf--------------------g~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~ 126 (176)
T PF00908_consen 86 RKGSP-TF--------------------GKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAE 126 (176)
T ss_dssp BTTST-TT--------------------T-EEEEEEETTT--EEEE-TTEEEEEEESSSEEE
T ss_pred CCCCC-CC--------------------CEEEEEEeCccccCEEEeCCcceeeEEeccCceE
Confidence 211 22 22 46676654 79999999999999877633
No 104
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=94.46 E-value=0.3 Score=46.45 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=51.9
Q ss_pred EEEEEecC-CceecCeeecCCceEEEEecccceEEEEEeeCCCCCC-cccCCCCCC-CC----------ccCCccccccc
Q 046186 69 VVRHTIRQ-KGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPE-TYQSPQQGG-FG----------ESAGRSQQDSH 135 (436)
Q Consensus 69 ~~r~~i~p-g~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~e-t~~~~~~~~-~~----------~~~~~~~~d~~ 135 (436)
...+-|.+ |+....|+-..+-+..+++| +=++-++.|.... -+..+...+ .. ...-....+.+
T Consensus 132 ~~~l~ig~~gs~t~lH~D~~~n~~~~i~G----~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~ 207 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDPSHNLLAQIRG----RKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAP 207 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-SSEEEEEEEES----EEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--
T ss_pred ccEEEEeCCCceeeeeECchhhhhhccCC----CEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCc
Confidence 44566666 45677788778999999999 8888888775322 222111000 00 00001111112
Q ss_pred ceeeeeccCcEEEeCCCCeEEEeccCCCc
Q 046186 136 QKIRRFRQGDIFALPAGVAHWCYNEGSTP 164 (436)
Q Consensus 136 ~k~~~l~~GDv~~iPaG~~h~~~N~g~e~ 164 (436)
-....|++||+++||+|.-|.+.|..+++
T Consensus 208 ~~~~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 208 PYEVVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEEEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred eeEEEECCCeEEEECCCCeEEEEEcCCCC
Confidence 23589999999999999999999984333
No 105
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=94.30 E-value=0.1 Score=45.54 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=41.6
Q ss_pred eEEEEEEecCCceecCeee-cCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186 67 VAVVRHTIRQKGLLLPQFS-NSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD 145 (436)
Q Consensus 67 v~~~r~~i~pg~l~~Ph~h-~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD 145 (436)
+....-.-.||.. +++ +..|..|+|+| ++++. | ...+..++++||
T Consensus 45 ~~~GiWe~TpG~~---r~~y~~~E~chil~G----~v~~T---~------------------------d~Ge~v~~~aGD 90 (116)
T COG3450 45 VETGIWECTPGKF---RVTYDEDEFCHILEG----RVEVT---P------------------------DGGEPVEVRAGD 90 (116)
T ss_pred eeEeEEEecCccc---eEEcccceEEEEEee----EEEEE---C------------------------CCCeEEEEcCCC
Confidence 4455555666654 233 36999999999 88776 2 124578999999
Q ss_pred EEEeCCCCeEEEe
Q 046186 146 IFALPAGVAHWCY 158 (436)
Q Consensus 146 v~~iPaG~~h~~~ 158 (436)
++++|+|..--+.
T Consensus 91 ~~~~~~G~~g~W~ 103 (116)
T COG3450 91 SFVFPAGFKGTWE 103 (116)
T ss_pred EEEECCCCeEEEE
Confidence 9999999875543
No 106
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=94.16 E-value=0.55 Score=43.88 Aligned_cols=109 Identities=15% Similarity=0.080 Sum_probs=67.3
Q ss_pred ccccccCCCceeecCCc-EEEEeCCC-Ccc------ccccceEEEEEEecCCceecCeeec---CCceEEEEecccceEE
Q 046186 34 NNLEALEPNNRVECEAG-VVETWDPG-HEQ------FQCAGVAVVRHTIRQKGLLLPQFSN---SPQLVYILQAYTYRRG 102 (436)
Q Consensus 34 ~~l~a~eP~~~~~se~G-~~e~~~~~-~p~------l~~~gv~~~r~~i~pg~l~~Ph~h~---a~ei~yV~~G~~~~~g 102 (436)
.-+...+|.. +.-+-| .+|.+..+ +.. +.-.++++ -.+|.+...|+|. ..++++|++| +.
T Consensus 8 ~Gv~~i~~~~-~~D~RG~f~e~f~~~~~~~~g~~~~~~Q~n~S~----S~~gvlRGlH~q~~~~q~Klv~c~~G----~i 78 (176)
T TIGR01221 8 PDVLLIEPRV-FGDERGFFMETYNDEAFQEQGIPVRFVQDNHSK----SYKGVLRGLHYQRPHPQGKLVRVLRG----EV 78 (176)
T ss_pred CCEEEEeCcE-EeeCCCCEEeeeehhhHHHcCCCCCcceeEEEE----ecCCEEEEEEECCCCCCceEEEEccC----CE
Confidence 3344455654 444555 46777653 221 21223333 3678899999982 6899999999 88
Q ss_pred EEEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeeecc--CcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186 103 SHGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ--GDIFALPAGVAHWCYNEGSTPVVAVVL 170 (436)
Q Consensus 103 ~~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~--GDv~~iPaG~~h~~~N~g~e~l~~v~~ 170 (436)
..-+|+.-- +-||. .+ ....|.+ +..++||+|++|-.++.+++ ..++..
T Consensus 79 ~dV~VDlR~~SpTfG-----------------~~-~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 79 FDVAVDLRRNSPTFG-----------------KW-VGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred EEEEEECCCCcCCCC-----------------eE-EEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 877776510 11221 01 1345554 67999999999999998765 544443
No 107
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=93.72 E-value=0.33 Score=40.63 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=40.1
Q ss_pred EEecCCceecccccCCCc-EEEEEE---eeeEEEEEEeCCCC-----------------eEEEEEecCccEEEEcCCCEE
Q 046186 339 GLLHRNAMMVPHWNLNAH-SIMYAI---SGSCHVQVVDSYGR-----------------SVYDGEVRRGQIMVVPQNFAV 397 (436)
Q Consensus 339 v~L~~gam~~PHwh~~A~-ei~yV~---~G~grv~vv~~~G~-----------------~~~~~~l~~Gdv~vVP~g~~h 397 (436)
...++|+..++|.|+++. .-+|.+ .+.+.+.+.++++. ..+.-..++||++++|.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 356799999999999986 555555 35566777777531 144556899999999999999
Q ss_pred EE--EeCCCcEEEEEE
Q 046186 398 VK--RAGGAEFEWISF 411 (436)
Q Consensus 398 ~~--~ag~e~~~~l~f 411 (436)
.. +.+++.=.-|+|
T Consensus 85 ~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 85 GVPPNNSDEERISISF 100 (101)
T ss_dssp EE----SSS-EEEEEE
T ss_pred eccCcCCCCCEEEEEc
Confidence 86 444433333433
No 108
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=93.65 E-value=0.45 Score=44.42 Aligned_cols=104 Identities=18% Similarity=0.145 Sum_probs=66.9
Q ss_pred ccccCCCceeecCCcE-EEEeCCC-Cc------cccccceEEEEEEecCCceecCeeec-C-CceEEEEecccceEEEEE
Q 046186 36 LEALEPNNRVECEAGV-VETWDPG-HE------QFQCAGVAVVRHTIRQKGLLLPQFSN-S-PQLVYILQAYTYRRGSHG 105 (436)
Q Consensus 36 l~a~eP~~~~~se~G~-~e~~~~~-~p------~l~~~gv~~~r~~i~pg~l~~Ph~h~-a-~ei~yV~~G~~~~~g~~g 105 (436)
+-..+|. ++.-+-|. +|.+... +. .+.-.++++.. ||-+...|||. - .+++.|++| +...-
T Consensus 11 v~~~~~~-~~~D~RG~F~E~~~~~~~~~~~~~~~~~Q~n~S~S~----~GvlRGlHyq~~~q~klv~~v~G----~v~dv 81 (173)
T COG1898 11 VLIIEPK-VFGDERGFFTETFKAEEFSTLGLPLDFVQDNHSFSY----PGVLRGLHYQHKPQGKLVRVVSG----KVFDV 81 (173)
T ss_pred eEEECCc-ccccccceeeehhhhhhhhhccCccccccceEEEec----CCeeEEEEcccCCCCeEEEEecC----eEEEE
Confidence 3344454 35556665 4666521 11 12223556554 99999999998 4 699999999 88877
Q ss_pred eeCC--CCCCcccCCCCCCCCccCCcccccccce--eeeec--cCcEEEeCCCCeEEEeccCCCcEEEEE
Q 046186 106 DPFP--GYPETYQSPQQGGFGESAGRSQQDSHQK--IRRFR--QGDIFALPAGVAHWCYNEGSTPVVAVV 169 (436)
Q Consensus 106 ~v~p--g~~et~~~~~~~~~~~~~~~~~~d~~~k--~~~l~--~GDv~~iPaG~~h~~~N~g~e~l~~v~ 169 (436)
+|+- +.| || .+ ...|. -.-.+.||+|++|-++|.+++..++..
T Consensus 82 ~vDlR~~Sp-Ty--------------------g~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~ 130 (173)
T COG1898 82 AVDLRKDSP-TY--------------------GKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYK 130 (173)
T ss_pred EEEccCCCC-Cc--------------------ceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEE
Confidence 7764 212 33 22 23343 347899999999999999988644333
No 109
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=93.58 E-value=0.55 Score=42.79 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=49.9
Q ss_pred ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186 66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD 145 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD 145 (436)
.+++......+ -..|-+.+.+|+-||++| +..+-+ .| +.-.-++||
T Consensus 99 ~l~aG~m~~~~--~tf~wtl~yDe~d~VlEG----rL~V~~--~g--------------------------~tv~a~aGD 144 (176)
T COG4766 99 RLGAGLMEMKN--TTFPWTLNYDEIDYVLEG----RLHVRI--DG--------------------------RTVIAGAGD 144 (176)
T ss_pred ccccceeeecc--ccCcceecccceeEEEee----eEEEEE--cC--------------------------CeEecCCCc
Confidence 35666667777 455666779999999999 766643 21 245679999
Q ss_pred EEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186 146 IFALPAGVAHWCYNEGSTPVVAVVLLD 172 (436)
Q Consensus 146 v~~iPaG~~h~~~N~g~e~l~~v~~~d 172 (436)
|++||.|..--+--.|. +.++.+.-
T Consensus 145 vifiPKgssIefst~ge--a~flyvty 169 (176)
T COG4766 145 VIFIPKGSSIEFSTTGE--AKFLYVTY 169 (176)
T ss_pred EEEecCCCeEEEeccce--EEEEEEEc
Confidence 99999998876654443 66665544
No 110
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=0.12 Score=53.20 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=55.6
Q ss_pred CCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEE--EeC----------------CCCeEEEEEecCcc
Q 046186 326 LPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQV--VDS----------------YGRSVYDGEVRRGQ 387 (436)
Q Consensus 326 ~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~v--v~~----------------~G~~~~~~~l~~Gd 387 (436)
+|.-+.=++-++ ...+||=+.|||-+.. +|.++|.|+-.. --. .+....+..+.+||
T Consensus 113 lP~wr~ddiMIS--~a~~GGgvg~H~D~YD---VfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGD 187 (383)
T COG2850 113 LPDWRIDDIMIS--FAAPGGGVGPHFDQYD---VFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGD 187 (383)
T ss_pred CccccccceEEE--EecCCCccCccccchh---eeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCc
Confidence 444443345555 6789999999998654 678888876542 211 11235678899999
Q ss_pred EEEEcCCCEEEEEeCCCcEEE
Q 046186 388 IMVVPQNFAVVKRAGGAEFEW 408 (436)
Q Consensus 388 v~vVP~g~~h~~~ag~e~~~~ 408 (436)
|+|||.+|+|.=+|-.+.+.|
T Consensus 188 iLYiPp~~~H~gvae~dc~ty 208 (383)
T COG2850 188 ILYIPPGFPHYGVAEDDCMTY 208 (383)
T ss_pred eeecCCCCCcCCcccccccce
Confidence 999999999998888666666
No 111
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=92.88 E-value=0.71 Score=42.35 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=50.2
Q ss_pred ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186 66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD 145 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD 145 (436)
-..+....|.||+.+.||.-+.... = +..++++.| .+.. .. -...+.+..++|+
T Consensus 79 ~~~~~~s~l~pg~~I~pH~d~~~~~-----l----R~Hl~L~~p-~~~~---------------~~-~v~~~~~~w~~G~ 132 (163)
T PF05118_consen 79 LGRVRFSRLPPGTHIKPHRDPTNLR-----L----RLHLPLIVP-NPGC---------------YI-RVGGETRHWREGE 132 (163)
T ss_dssp CEEEEEEEEECTEEEEEE-SS-TTE-----E----EEEEEEC---STTE---------------EE-EETTEEEB--CTE
T ss_pred hhhEEEEEECCCCEECCeeCCCCcc-----e----EEEEEEEcC-CCCe---------------EE-EECCeEEEeccCc
Confidence 3457778899999999999764433 1 677787765 1110 00 0123568999999
Q ss_pred EEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186 146 IFALPAGVAHWCYNEGSTPVVAVVLLDVA 174 (436)
Q Consensus 146 v~~iPaG~~h~~~N~g~e~l~~v~~~d~~ 174 (436)
++++-....|+..|.|+++=+ +.++|.-
T Consensus 133 ~~~fD~s~~H~~~N~~~~~Rv-~L~vD~~ 160 (163)
T PF05118_consen 133 CWVFDDSFEHEVWNNGDEDRV-VLIVDFW 160 (163)
T ss_dssp EEEE-TTS-EEEEESSSS-EE-EEEEEEE
T ss_pred EEEEeCCEEEEEEeCCCCCEE-EEEEEee
Confidence 999999999999999986433 3346643
No 112
>PF12852 Cupin_6: Cupin
Probab=92.83 E-value=0.56 Score=43.32 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=36.3
Q ss_pred CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCC
Q 046186 87 SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGS 162 (436)
Q Consensus 87 a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~ 162 (436)
...+.||++| ++.+.+ ++ .+....|++||++.+|.|.+|++....+
T Consensus 35 ~~~fh~V~~G----~~~l~~--~~------------------------~~~~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 35 GASFHVVLRG----SCWLRV--PG------------------------GGEPIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred ceEEEEEECC----eEEEEE--cC------------------------CCCeEEecCCCEEEEcCCCCeEeCCCCC
Confidence 4678899999 888874 21 1236899999999999999999965544
No 113
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=92.83 E-value=0.15 Score=46.94 Aligned_cols=57 Identities=26% Similarity=0.383 Sum_probs=43.4
Q ss_pred eecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccccccee-eeeccCcEEEeCCCCeEEE
Q 046186 79 LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI-RRFRQGDIFALPAGVAHWC 157 (436)
Q Consensus 79 l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~-~~l~~GDv~~iPaG~~h~~ 157 (436)
+..+|-|.-.||-||+.| .|..-+=+. | .+=+ .-++.||.+++|||+-|-+
T Consensus 85 FfEEhlh~deeiR~il~G----tgYfDVrd~-----------------------d-d~WIRi~vekGDlivlPaGiyHRF 136 (179)
T KOG2107|consen 85 FFEEHLHEDEEIRYILEG----TGYFDVRDK-----------------------D-DQWIRIFVEKGDLIVLPAGIYHRF 136 (179)
T ss_pred HHHHhcCchhheEEEeec----ceEEeeccC-----------------------C-CCEEEEEEecCCEEEecCcceeee
Confidence 467999999999999999 998865211 1 1223 5679999999999999987
Q ss_pred eccCCC
Q 046186 158 YNEGST 163 (436)
Q Consensus 158 ~N~g~e 163 (436)
.-+.+.
T Consensus 137 Ttt~~n 142 (179)
T KOG2107|consen 137 TTTPSN 142 (179)
T ss_pred ecCchH
Confidence 654443
No 114
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=0.09 Score=55.59 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=49.3
Q ss_pred ceEEEEEecCCce--ecccccCCCcEEEEEEeeeEEEEEEeCC-------------------CCeEEEEEecCccEEEEc
Q 046186 334 LSAERGLLHRNAM--MVPHWNLNAHSIMYAISGSCHVQVVDSY-------------------GRSVYDGEVRRGQIMVVP 392 (436)
Q Consensus 334 ls~~~v~L~~gam--~~PHwh~~A~ei~yV~~G~grv~vv~~~-------------------G~~~~~~~l~~Gdv~vVP 392 (436)
+..+.+.|+|-+- ++|||.-- .-++.=++|+=+..+..|. |.-+++..|++||++|||
T Consensus 316 ~vGaNvYLTPagSqGfaPHyDdI-eaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfP 394 (629)
T KOG3706|consen 316 LVGANVYLTPAGSQGFAPHYDDI-EAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFP 394 (629)
T ss_pred ccccceeecCCCCCCCCCchhhh-hhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEec
Confidence 4455677776543 78999722 2345567888888888874 334888999999999999
Q ss_pred CCCEEEEEe
Q 046186 393 QNFAVVKRA 401 (436)
Q Consensus 393 ~g~~h~~~a 401 (436)
+|+.|--.+
T Consensus 395 RG~IHQA~t 403 (629)
T KOG3706|consen 395 RGTIHQADT 403 (629)
T ss_pred Ccceeeccc
Confidence 999996533
No 115
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=91.06 E-value=1.9 Score=43.83 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=43.0
Q ss_pred EEEEEecCCc--eecCeeecCCceEEEEecccceEEEEEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186 69 VVRHTIRQKG--LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD 145 (436)
Q Consensus 69 ~~r~~i~pg~--l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD 145 (436)
.+-+-+.|+| -+.|||=+.+-+++=+.| +=+..+-.+.. +..+.+...- ..-.....-....|++||
T Consensus 115 ~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G----~K~W~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~L~pGD 184 (319)
T PF08007_consen 115 GANAYLTPPGSQGFGPHYDDHDVFVLQLEG----RKRWRLYPPPDEPAPLYSDQPF------KQLEEFEPVEEVVLEPGD 184 (319)
T ss_dssp EEEEEEETSSBEESECEE-SSEEEEEEEES-----EEEEEE-SCCCTTTSSCE--T------TTCG--STSEEEEE-TT-
T ss_pred ceEEEecCCCCCCccCEECCcccEEEECCc----eeEEEECCCCcccccccCCCCc------cccccCceeEEEEECCCC
Confidence 3455677777 799999887776666777 44444433211 1011100000 000000011258899999
Q ss_pred EEEeCCCCeEEEeccC
Q 046186 146 IFALPAGVAHWCYNEG 161 (436)
Q Consensus 146 v~~iPaG~~h~~~N~g 161 (436)
+++||+|+.|.....+
T Consensus 185 ~LYlPrG~~H~~~~~~ 200 (319)
T PF08007_consen 185 VLYLPRGWWHQAVTTD 200 (319)
T ss_dssp EEEE-TT-EEEEEESS
T ss_pred EEEECCCccCCCCCCC
Confidence 9999999999999887
No 116
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=90.92 E-value=2.1 Score=36.11 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=47.6
Q ss_pred EEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186 337 ERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK 412 (436)
Q Consensus 337 ~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~ 412 (436)
..+.|++|+-......+.-+-++||++|++.+ + |.. ..+.+|+++++..+-...+.+.+++++++.+.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v---~--~~~---~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV---G--GEE---DPLEAGQLVVLEDGDEIELTAGEEGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE---T--TTT---EEEETTEEEEE-SECEEEEEESSSSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEE---C--CCc---ceECCCcEEEECCCceEEEEECCCCcEEEEEE
Confidence 35788999887755555556899999999755 2 232 45889999999977777777776888887774
No 117
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=90.37 E-value=1.9 Score=41.58 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=60.3
Q ss_pred ceEEEEEecCCc-eecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186 334 LSAERGLLHRNA-MMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF 411 (436)
Q Consensus 334 ls~~~v~L~~ga-m~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f 411 (436)
++=..+.+.||| --.|--.++|-.++||++|+..+.+-+ + +..|++|+-.++|.|-.+.. |+..++..|..|
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G---~---th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~ 134 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEG---K---THALREGGYAYLPPGSGWTLRNAQKEDSRFHWI 134 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcC---e---EEEeccCCeEEeCCCCcceEeeccCCceEEEEE
Confidence 344567887776 888888889999999999999988754 3 23499999999999999887 777777777776
Q ss_pred EecCC
Q 046186 412 KTNDN 416 (436)
Q Consensus 412 ~~s~~ 416 (436)
.+.=.
T Consensus 135 rk~Y~ 139 (264)
T COG3257 135 RKRYQ 139 (264)
T ss_pred eecce
Confidence 65433
No 118
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=90.20 E-value=1.1 Score=44.69 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=55.6
Q ss_pred CCceeccccc-CCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCc-cEEEEcCCCEEEEEeCCCcEE-EEEEEecC
Q 046186 343 RNAMMVPHWN-LNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRG-QIMVVPQNFAVVKRAGGAEFE-WISFKTND 415 (436)
Q Consensus 343 ~gam~~PHwh-~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~G-dv~vVP~g~~h~~~ag~e~~~-~l~f~~s~ 415 (436)
|++++.||-| +...+..-|++|+..+.+.+.+|.......+.+. +..+||.+-.|.+...+++.. ++.|+...
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~fy~~~ 95 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSFYCKP 95 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEEEEcc
Confidence 7888999988 5678999999999999999999876555556664 455788888888866655544 46666554
No 119
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=89.96 E-value=0.96 Score=44.53 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=37.7
Q ss_pred CeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccC
Q 046186 82 PQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEG 161 (436)
Q Consensus 82 Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g 161 (436)
|+-.++-.+.|+++| +|.+-+ .++.+.+++||++.+|+|.+|.+....
T Consensus 44 ~~~~~~~~i~~~~~G----~~~~~~----------------------------~~~~~~~~~g~~i~i~p~~~h~~~~~~ 91 (290)
T PRK10572 44 PLGMKGYILNLTIRG----QGVIFN----------------------------GGRAFVCRPGDLLLFPPGEIHHYGRHP 91 (290)
T ss_pred CCCccceEEEEEEec----cEEEec----------------------------CCeeEecCCCCEEEECCCCceeeccCC
Confidence 444445678999999 888752 134689999999999999999876654
Q ss_pred C
Q 046186 162 S 162 (436)
Q Consensus 162 ~ 162 (436)
+
T Consensus 92 ~ 92 (290)
T PRK10572 92 D 92 (290)
T ss_pred C
Confidence 4
No 120
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=89.89 E-value=0.51 Score=39.54 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=20.2
Q ss_pred eeeeccCcEEEeCCCCeEEEeccCCC
Q 046186 138 IRRFRQGDIFALPAGVAHWCYNEGST 163 (436)
Q Consensus 138 ~~~l~~GDv~~iPaG~~h~~~N~g~e 163 (436)
...-++||.+++|+|..|+..|.|+.
T Consensus 82 ~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 82 RFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp EEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred cceECCCCEEEECCCceEEEEeCCce
Confidence 35669999999999999999999975
No 121
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=89.86 E-value=0.96 Score=43.18 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=49.1
Q ss_pred EEEecCCceecccccCCCc--EEEEEE--eeeEEEEEEeCCCC-----------------eEEEEEecCccEEEEcCCCE
Q 046186 338 RGLLHRNAMMVPHWNLNAH--SIMYAI--SGSCHVQVVDSYGR-----------------SVYDGEVRRGQIMVVPQNFA 396 (436)
Q Consensus 338 ~v~L~~gam~~PHwh~~A~--ei~yV~--~G~grv~vv~~~G~-----------------~~~~~~l~~Gdv~vVP~g~~ 396 (436)
.+.+.+|+...+|.||++. -+.||. .+.+.+.+.+|... ......-++||++++|.-+.
T Consensus 100 ~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~ 179 (201)
T TIGR02466 100 VNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWLR 179 (201)
T ss_pred EEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCCc
Confidence 4566899999999999984 355554 34455556555321 11223458999999999999
Q ss_pred EEE--EeCCCcEEEEEE
Q 046186 397 VVK--RAGGAEFEWISF 411 (436)
Q Consensus 397 h~~--~ag~e~~~~l~f 411 (436)
|.. +.+++.=.-|+|
T Consensus 180 H~v~p~~~~~~RISiSF 196 (201)
T TIGR02466 180 HEVPPNESEEERISVSF 196 (201)
T ss_pred eecCCCCCCCCEEEEEE
Confidence 986 555544444555
No 122
>PF12852 Cupin_6: Cupin
Probab=89.67 E-value=1.2 Score=41.11 Aligned_cols=43 Identities=26% Similarity=0.440 Sum_probs=33.7
Q ss_pred CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186 355 AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA 401 (436)
Q Consensus 355 A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a 401 (436)
...+.||++|++++.+=+ .+ ..+ .|++||++++|+|.+|.+-.
T Consensus 35 ~~~fh~V~~G~~~l~~~~-~~-~~~--~L~~GDivllp~g~~H~l~~ 77 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPG-GG-EPI--RLEAGDIVLLPRGTAHVLSS 77 (186)
T ss_pred ceEEEEEECCeEEEEEcC-CC-CeE--EecCCCEEEEcCCCCeEeCC
Confidence 367899999999999543 22 223 39999999999999999833
No 123
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.27 E-value=1.7 Score=44.91 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=53.6
Q ss_pred CccccccceEEEEEecCCce-ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCc
Q 046186 327 PVLRWIQLSAERGLLHRNAM-MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAE 405 (436)
Q Consensus 327 P~L~~l~ls~~~v~L~~gam-~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~ 405 (436)
|... ..++-.+++..|.- .-|-- ....|..|++|+|.+.--. +.. ..+++|||++||+.++..+.+.++.
T Consensus 328 Ppi~--eF~v~~~~v~~g~~~~~~~~--~~~SIllv~~G~g~l~~~t--~~~---~~v~rG~V~fI~a~~~i~~~~~sd~ 398 (411)
T KOG2757|consen 328 PPIE--EFAVLETKVPTGESYKFPGV--DGPSILLVLKGSGILKTDT--DSK---ILVNRGDVLFIPANHPIHLSSSSDP 398 (411)
T ss_pred CCCc--ceeEEEeecCCCceEEeecC--CCceEEEEEecceEEecCC--CCc---eeeccCcEEEEcCCCCceeeccCcc
Confidence 4444 67777788877643 33433 3678999999999988542 222 2489999999999999888787777
Q ss_pred EEEEE
Q 046186 406 FEWIS 410 (436)
Q Consensus 406 ~~~l~ 410 (436)
|...-
T Consensus 399 ~~~yr 403 (411)
T KOG2757|consen 399 FLGYR 403 (411)
T ss_pred eeeee
Confidence 55443
No 124
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=88.35 E-value=3.1 Score=44.13 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=53.0
Q ss_pred cceEEEEEecCCce-ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186 333 QLSAERGLLHRNAM-MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF 411 (436)
Q Consensus 333 ~ls~~~v~L~~gam-~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f 411 (436)
||++....... .| -.-..|..+.+++|+.+|.++++=-- |. ++ +++||+.|||+|.-+.+.-.+.....+.+
T Consensus 132 G~ai~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L~--v~pgei~VIPRG~~frv~l~~gp~rgyi~ 204 (438)
T PRK05341 132 GMAIHLYAANR-SMQDRYFYNADGELLIVPQQGRLRLATEL--GV--LD--VEPGEIAVIPRGVKFRVELPDGPARGYVC 204 (438)
T ss_pred ccEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEec--cc--eE--ecCCCEEEEcCccEEEEecCCCCeeEEEE
Confidence 55555544444 66 55557778899999999999988444 33 33 88999999999999887654445555444
Q ss_pred EecC
Q 046186 412 KTND 415 (436)
Q Consensus 412 ~~s~ 415 (436)
.+..
T Consensus 205 E~~g 208 (438)
T PRK05341 205 ENYG 208 (438)
T ss_pred EecC
Confidence 4443
No 125
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=87.72 E-value=2.9 Score=44.27 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=35.5
Q ss_pred cCCceecccccCC-CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEE
Q 046186 342 HRNAMMVPHWNLN-AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAV 397 (436)
Q Consensus 342 ~~gam~~PHwh~~-A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h 397 (436)
.+++++.|.+|.| .+|+++.+.|.-...- .-+.+|.+=.=|.+.+|
T Consensus 326 ~e~TfrpPyyHrNv~sEfmgli~G~y~ak~----------~gf~pGg~SLH~~~~pH 372 (438)
T PRK05341 326 AENTFRPPWFHRNVMSEFMGLIHGVYDAKA----------EGFVPGGASLHNCMSPH 372 (438)
T ss_pred CCCccCCCCCccchhhhhhhhccccccccc----------cCcCCCeeeecCCCCCC
Confidence 7999999999998 4699988888643321 12678888888888885
No 126
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=86.27 E-value=3.8 Score=43.31 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=34.6
Q ss_pred ecCCceecccccCC-CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEE
Q 046186 341 LHRNAMMVPHWNLN-AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAV 397 (436)
Q Consensus 341 L~~gam~~PHwh~~-A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h 397 (436)
..+++++.|.+|.| .+|+++.+.|.-... +..+.+|.+=+=|.+.+|
T Consensus 320 vae~TfrpPyyHrN~~sEfmgli~G~y~ak----------~~gf~pGg~SlH~~~~pH 367 (429)
T TIGR01015 320 VAEKTFRPPYYHRNCMSEFMGLITGAYDAK----------EGGFVPGGGSLHNMMTPH 367 (429)
T ss_pred CCCCccCCCCCccchhhhhhhhcccccccc----------cCCcCCCeeeecCCCCCC
Confidence 45999999999998 468888888763221 012678888888888875
No 127
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=86.04 E-value=5.2 Score=31.81 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=42.6
Q ss_pred EEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186 361 AISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF 411 (436)
Q Consensus 361 V~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f 411 (436)
-..|..-++|.+.+|+.+++..+++||.+-++..-+..+..|+-+..-+.+
T Consensus 4 ~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i~iGna~~v~v~~ 54 (77)
T PF13464_consen 4 TATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRIRIGNAGAVEVTV 54 (77)
T ss_pred EEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 456889999999999999999999999999998899888888755444433
No 128
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=85.84 E-value=4.1 Score=34.98 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=44.9
Q ss_pred CceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCC--CC
Q 046186 77 KGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPA--GV 153 (436)
Q Consensus 77 g~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPa--G~ 153 (436)
+.-+.+|-|. -+-+.||++| +.... |+......|++||+-.+-| |+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G----~~~H~---------------------------Ds~G~~~~l~~G~vq~m~AG~Gi 87 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEG----ELRHR---------------------------DSLGNRGVLRAGDVQWMTAGSGI 87 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEES----EEEEE---------------------------ETTSEEEEEETTEEEEEE-TTTE
T ss_pred CCCCCCcCCCCceEEEEEecC----EEEEE---------------------------CCCCCeeEeCCCeEEEEeCCCCc
Confidence 5556899998 7888999999 76654 2223346899999999888 67
Q ss_pred eEEEeccCC-CcEEEEEE
Q 046186 154 AHWCYNEGS-TPVVAVVL 170 (436)
Q Consensus 154 ~h~~~N~g~-e~l~~v~~ 170 (436)
.|.-.|.++ .++.++-+
T Consensus 88 ~H~E~~~~~~~~~~~lQl 105 (107)
T PF02678_consen 88 VHSERNASDGGPLHGLQL 105 (107)
T ss_dssp EEEEEE-TSSS-EEEEEE
T ss_pred eEEEecCCCCCeEEEEEE
Confidence 888889876 77776643
No 129
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=85.72 E-value=12 Score=33.75 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=55.1
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEee-eEEEEEEeCCCCe---EEEEEecCcc--EEEEcCCCEEEE-EeCCCc
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISG-SCHVQVVDSYGRS---VYDGEVRRGQ--IMVVPQNFAVVK-RAGGAE 405 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G-~grv~vv~~~G~~---~~~~~l~~Gd--v~vVP~g~~h~~-~ag~e~ 405 (436)
-+++-+.-|+++.+..-|-. +++|+-|...| ..++-+++++|+- ++-.++.+|+ .+|||.|....- ..+..+
T Consensus 40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~ 118 (139)
T PF06172_consen 40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGD 118 (139)
T ss_dssp S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSS
T ss_pred cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCC
Confidence 45556666888887765554 78887777777 8889999999873 2333345564 689999998765 345567
Q ss_pred EEEEEEEecC
Q 046186 406 FEWISFKTND 415 (436)
Q Consensus 406 ~~~l~f~~s~ 415 (436)
.-+++.....
T Consensus 119 y~Lvsc~VaP 128 (139)
T PF06172_consen 119 YSLVSCTVAP 128 (139)
T ss_dssp EEEEEEEESS
T ss_pred EEEEEEEEcC
Confidence 7787776553
No 130
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=84.67 E-value=3.8 Score=42.40 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=52.2
Q ss_pred ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186 66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD 145 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD 145 (436)
..++...++.+|.-.---..+.+.|+.|++| +|++..- ......+.+||
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G----~g~l~~~---------------------------t~~~~~v~rG~ 380 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVDGPSILLVLKG----SGILKTD---------------------------TDSKILVNRGD 380 (411)
T ss_pred ceeEEEeecCCCceEEeecCCCceEEEEEec----ceEEecC---------------------------CCCceeeccCc
Confidence 4677888888877655556789999999999 9988631 12357899999
Q ss_pred EEEeCCCCeEEEeccCCCcEEEE
Q 046186 146 IFALPAGVAHWCYNEGSTPVVAV 168 (436)
Q Consensus 146 v~~iPaG~~h~~~N~g~e~l~~v 168 (436)
|++||+.++--+ +..++++..+
T Consensus 381 V~fI~a~~~i~~-~~~sd~~~~y 402 (411)
T KOG2757|consen 381 VLFIPANHPIHL-SSSSDPFLGY 402 (411)
T ss_pred EEEEcCCCCcee-eccCcceeee
Confidence 999999988744 3344544443
No 131
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=84.62 E-value=4.6 Score=42.36 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=42.5
Q ss_pred ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186 66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD 145 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD 145 (436)
...+.++.+..+....+. ..+.|++|++| ++++.. . .....|++|+
T Consensus 320 ~F~~~~~~l~~~~~~~~~--~~~~Illv~~G----~~~i~~--~--------------------------~~~~~l~~G~ 365 (389)
T PRK15131 320 DFAFSLHDLSDQPTTLSQ--QSAAILFCVEG----EAVLWK--G--------------------------EQQLTLKPGE 365 (389)
T ss_pred CcEEEEEEECCceEEecC--CCcEEEEEEcc----eEEEEe--C--------------------------CeEEEECCCC
Confidence 356666777654333332 57899999999 998752 1 1246899999
Q ss_pred EEEeCCCCeEEEe
Q 046186 146 IFALPAGVAHWCY 158 (436)
Q Consensus 146 v~~iPaG~~h~~~ 158 (436)
+++||++...+..
T Consensus 366 ~~fipa~~~~~~~ 378 (389)
T PRK15131 366 SAFIAANESPVTV 378 (389)
T ss_pred EEEEeCCCccEEE
Confidence 9999999887765
No 132
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=83.56 E-value=7.1 Score=32.91 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=48.5
Q ss_pred ceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186 334 LSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK 412 (436)
Q Consensus 334 ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~ 412 (436)
--.....+.||- -+++..+.|+.-|++|...|.+-+.+. -.++.+|+.|.||++--.-+... +...++|.+
T Consensus 23 ~~~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~e----w~~~~aGesF~VpanssF~v~v~-~~~~Y~C~y 93 (94)
T PF06865_consen 23 SKKTLGVMLPGE---YTFGTSAPERMEVVSGELEVKLPGEDE----WQTYSAGESFEVPANSSFDVKVK-EPTAYLCSY 93 (94)
T ss_dssp EEEEEEEE-SEC---EEEEESS-EEEEEEESEEEEEETT-SS-----EEEETT-EEEE-TTEEEEEEES-S-EEEEEEE
T ss_pred CcceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCcc----cEEeCCCCeEEECCCCeEEEEEC-cceeeEEEe
Confidence 334455666665 567888999999999999999876542 23478999999999987766554 678888865
No 133
>PLN02658 homogentisate 1,2-dioxygenase
Probab=82.77 E-value=9.2 Score=40.59 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=51.2
Q ss_pred cceEEEEEecCCce-ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186 333 QLSAERGLLHRNAM-MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF 411 (436)
Q Consensus 333 ~ls~~~v~L~~gam-~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f 411 (436)
||++....... .| -.-..|..+.+++|+.+|.++++--- |. ++ +++||+.|||+|.-+.+.--+.....+.+
T Consensus 125 G~ai~iy~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L~--v~pgei~VIPRG~~frv~l~~gp~rgyv~ 197 (435)
T PLN02658 125 GYAIHMYVANK-SMDDCAFCNADGDFLIVPQQGRLWIKTEL--GK--LQ--VSPGEIVVIPRGFRFAVDLPDGPSRGYVL 197 (435)
T ss_pred CcEEEEEeCCC-CCccceeecCCCCEEEEEEeCCEEEEEec--cc--eE--ecCCCEEEecCccEEEEecCCCCeeEEEE
Confidence 55544433333 56 44467888899999999999988443 33 33 89999999999998887543344555444
Q ss_pred Eec
Q 046186 412 KTN 414 (436)
Q Consensus 412 ~~s 414 (436)
.+.
T Consensus 198 E~~ 200 (435)
T PLN02658 198 EIF 200 (435)
T ss_pred eec
Confidence 444
No 134
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=82.31 E-value=15 Score=34.14 Aligned_cols=77 Identities=5% Similarity=-0.128 Sum_probs=53.6
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC---e--E--EEEEecCccEEEEcCCCEEEE-EeC-C
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR---S--V--YDGEVRRGQIMVVPQNFAVVK-RAG-G 403 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~---~--~--~~~~l~~Gdv~vVP~g~~h~~-~ag-~ 403 (436)
.+.+-.+.-.||--.++|=|..++=++.|++|...-+.+..... . . ....+..|.+++++....|-+ |++ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 45666788999999999999999999999999999998877655 1 1 122367888888899999998 776 5
Q ss_pred CcEEEE
Q 046186 404 AEFEWI 409 (436)
Q Consensus 404 e~~~~l 409 (436)
+.+.-|
T Consensus 154 ~~avSL 159 (175)
T PF05995_consen 154 EPAVSL 159 (175)
T ss_dssp S-EEEE
T ss_pred CCEEEE
Confidence 554433
No 135
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=82.16 E-value=7.3 Score=32.44 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=35.1
Q ss_pred EEecCCceecCeeecCC---ceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEE
Q 046186 72 HTIRQKGLLLPQFSNSP---QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA 148 (436)
Q Consensus 72 ~~i~pg~l~~Ph~h~a~---ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~ 148 (436)
...++|+...+|.|+.. -++||--+.. .+.+.+..|.....+..+.... ..............++||+++
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~--~~~l~f~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~G~lvl 77 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEG--SGPLRFHDPRGSFSFGAPFDNY-----DQNDLNSPYYIVEPEEGDLVL 77 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TT--S-SEEEE-TTCCCGTTS----T-----TTTCCC-SEEEE---TTEEEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCC--CCceeeeCCCccceeccccccc-----ccCcccCceEEeCCCCCEEEE
Confidence 35678889999999853 4455542210 2334444442221111100000 000001112357889999999
Q ss_pred eCCCCeEEEe-ccCCCcE
Q 046186 149 LPAGVAHWCY-NEGSTPV 165 (436)
Q Consensus 149 iPaG~~h~~~-N~g~e~l 165 (436)
+|+-+.|... |.++++=
T Consensus 78 FPs~l~H~v~p~~~~~~R 95 (101)
T PF13759_consen 78 FPSWLWHGVPPNNSDEER 95 (101)
T ss_dssp EETTSEEEE----SSS-E
T ss_pred eCCCCEEeccCcCCCCCE
Confidence 9999999986 4445433
No 136
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=82.12 E-value=9.9 Score=40.31 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=50.0
Q ss_pred cceEEEEEecCCce-ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186 333 QLSAERGLLHRNAM-MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF 411 (436)
Q Consensus 333 ~ls~~~v~L~~gam-~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f 411 (436)
||++....... .| -.-..|..+++++|+.+|.++++--- |. +. +++||+.|||+|.-+.+.-. +....+.+
T Consensus 126 G~ai~iy~~~~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L~--v~pgei~VIPRG~~frv~l~-gp~rgyi~ 197 (429)
T TIGR01015 126 GLAIHIYLCNA-SMENRAFYNADGDFLIVPQQGALLITTEF--GR--LL--VEPNEICVIPRGVRFRVTVL-EPARGYIC 197 (429)
T ss_pred CceEEEEeCCC-CcccceeeccCCCEEEEEEeCcEEEEEec--cc--eE--ecCCCEEEecCccEEEEeeC-CCceEEEE
Confidence 55554444444 66 45557778899999999999988443 33 33 89999999999998877442 34444444
Q ss_pred Eec
Q 046186 412 KTN 414 (436)
Q Consensus 412 ~~s 414 (436)
.+.
T Consensus 198 E~~ 200 (429)
T TIGR01015 198 EVY 200 (429)
T ss_pred ecc
Confidence 333
No 137
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=81.91 E-value=4.8 Score=42.63 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=40.2
Q ss_pred Cce-ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEec
Q 046186 344 NAM-MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTN 414 (436)
Q Consensus 344 gam-~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s 414 (436)
.+| -.--.|..+++++|+.+|+++++=.. |. ++ +++||++|||+|.-+.+.-. ++...+.+.+.
T Consensus 134 ~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~--G~--L~--v~pGd~~VIPRG~~~rv~l~-~p~rgyi~E~~ 198 (424)
T PF04209_consen 134 ASMDDRAFRNADGDELIFPQQGSLRLETEF--GR--LD--VRPGDYVVIPRGTRFRVELP-GPARGYIIENF 198 (424)
T ss_dssp S---SEEEEESSEEEEEEEEES-EEEEETT--EE--EE--E-TTEEEEE-TT--EEEE-S-SSEEEEEEEEE
T ss_pred CCCCCcceEcCCCCEEEEEEECCEEEEecC--ee--EE--EcCCeEEEECCeeEEEEEeC-CCceEEEEEcC
Confidence 445 33346777889999999999987332 33 34 89999999999999887555 56666665543
No 138
>PRK10579 hypothetical protein; Provisional
Probab=81.44 E-value=16 Score=30.77 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=52.3
Q ss_pred EEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186 336 AERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK 412 (436)
Q Consensus 336 ~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~ 412 (436)
.....+.||- -++...+.|+.-|+.|+.+|.+-+.+. -.++++|+-|.||.+--.-+.+. +...++|.+
T Consensus 25 kTlGVm~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~e----w~~~~aG~sF~VpanssF~l~v~-~~t~Y~C~y 93 (94)
T PRK10579 25 ASVGVMAEGE---YTFSTAEPEEMTVISGALNVLLPGATD----WQVYEAGEVFNVPGHSEFHLQVA-EPTSYLCRY 93 (94)
T ss_pred eEEEEEeeeE---EEEcCCCcEEEEEEeeEEEEECCCCcc----cEEeCCCCEEEECCCCeEEEEEC-cceeeEEEc
Confidence 3344556664 578888999999999999999877542 33588999999999987766554 467777754
No 139
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=81.13 E-value=6.7 Score=33.08 Aligned_cols=64 Identities=9% Similarity=0.114 Sum_probs=39.6
Q ss_pred EEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEE
Q 046186 70 VRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA 148 (436)
Q Consensus 70 ~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~ 148 (436)
.-++|+||+-+.....+ ...++||++| ++.++ . + ...+.+|++++
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G----~~~v~---~--------------------------~-~~~~~~~~~~~ 47 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEG----SVEVG---G--------------------------E-EDPLEAGQLVV 47 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEES----EEEET---T--------------------------T-TEEEETTEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEEC----cEEEC---C--------------------------C-cceECCCcEEE
Confidence 45788999864333333 6789999999 87664 0 0 14689999999
Q ss_pred eCCCCeEEEeccCCCcEEEE
Q 046186 149 LPAGVAHWCYNEGSTPVVAV 168 (436)
Q Consensus 149 iPaG~~h~~~N~g~e~l~~v 168 (436)
+..|..-.+.+.+ +++.++
T Consensus 48 l~~g~~i~~~a~~-~~a~~l 66 (104)
T PF05726_consen 48 LEDGDEIELTAGE-EGARFL 66 (104)
T ss_dssp E-SECEEEEEESS-SSEEEE
T ss_pred ECCCceEEEEECC-CCcEEE
Confidence 9877776666653 444444
No 140
>PLN02658 homogentisate 1,2-dioxygenase
Probab=80.78 E-value=8.9 Score=40.69 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=33.6
Q ss_pred cCCceecccccCC-CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEE
Q 046186 342 HRNAMMVPHWNLN-AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAV 397 (436)
Q Consensus 342 ~~gam~~PHwh~~-A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h 397 (436)
..++++.|.+|.| ..|+++.+.|.- +.. +..+.+|.+=.=|.+.+|
T Consensus 320 ae~TfrpPyyHrN~~sEfmgli~G~y-----~ak-----~~gf~pGg~SLH~~~~pH 366 (435)
T PLN02658 320 AEHTFRPPYYHRNCMSEFMGLIYGSY-----EAK-----ADGFLPGGASLHSCMTPH 366 (435)
T ss_pred ccCccCCCCCccchhhhhhhhccccc-----ccc-----cCCccCCeeeecCCCCCC
Confidence 3499999999999 458888888862 111 112778888888888875
No 141
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=79.71 E-value=7.6 Score=35.71 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=41.0
Q ss_pred EEEEecCCceecccccC-CCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEc
Q 046186 337 ERGLLHRNAMMVPHWNL-NAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVP 392 (436)
Q Consensus 337 ~~v~L~~gam~~PHwh~-~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP 392 (436)
..+.+.+|-+.---=-| .++.+.+|++|.+++...+++|+...-.-+.+||+|=-+
T Consensus 7 ~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 7 DTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred ceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 34556666444322223 357899999999999999999998777788999987443
No 142
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=78.39 E-value=3.3 Score=37.85 Aligned_cols=45 Identities=31% Similarity=0.496 Sum_probs=36.8
Q ss_pred cccCCHHHHhhhcCCCHHHHHHHhhcC------CCceeEEEEcCceeccCC
Q 046186 216 FCGFDTRILAEAFNVDERLVRRLRSEK------DYRGAIVTVRGQLQVARP 260 (436)
Q Consensus 216 ~~gf~~~vLa~af~v~~~~v~~l~~~~------~~rG~Iv~~~~~l~~~~p 260 (436)
-...+++-+|+.|+++.+.+++++..+ |+.|.|+.|+.+...+.|
T Consensus 96 ~~~l~~dElA~sF~l~~e~i~qLr~~kiltVh~De~G~Ii~V~~~~~~p~p 146 (153)
T PRK14584 96 RPDLDDDELASSFALSPELIAQLKSGSCLTLYNDEHGHIIDVKEGLQLPEP 146 (153)
T ss_pred CCCCChHHHHHHcCCCHHHHHHHHhCCeEEEEECCCCCEEEeecCCCCCCc
Confidence 357899999999999999999998765 567999999876655444
No 143
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.29 E-value=1.5 Score=46.64 Aligned_cols=75 Identities=16% Similarity=0.262 Sum_probs=47.8
Q ss_pred EEEecC-Cce-ecCeeecCCceEEEEecccceEEEEEeeCCCCCCc--c-cCCCCCCCCccCCccccccccee--eeecc
Q 046186 71 RHTIRQ-KGL-LLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPET--Y-QSPQQGGFGESAGRSQQDSHQKI--RRFRQ 143 (436)
Q Consensus 71 r~~i~p-g~l-~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et--~-~~~~~~~~~~~~~~~~~d~~~k~--~~l~~ 143 (436)
-+-|.| |+- +.|||-+-..++.=++| +-..-+-.|-.|.. + .|+-+= ...|....+ .-|++
T Consensus 320 NvYLTPagSqGfaPHyDdIeaFvlQvEG----rK~Wrly~P~~~~eel~l~sS~Nf--------~eedlgePV~e~vle~ 387 (629)
T KOG3706|consen 320 NVYLTPAGSQGFAPHYDDIEAFVLQVEG----RKHWRLYHPTVPLEELALVSSDNF--------TEEDLGEPVHEFVLEP 387 (629)
T ss_pred ceeecCCCCCCCCCchhhhhhhhheecc----ceeeEeecCCCcHhhhhhccCCCC--------ChhHhCCchHHhhcCC
Confidence 344544 443 99999998888889999 77777666655431 0 111000 000112222 67899
Q ss_pred CcEEEeCCCCeEEE
Q 046186 144 GDIFALPAGVAHWC 157 (436)
Q Consensus 144 GDv~~iPaG~~h~~ 157 (436)
||+++||.|.+|-.
T Consensus 388 GDllYfPRG~IHQA 401 (629)
T KOG3706|consen 388 GDLLYFPRGTIHQA 401 (629)
T ss_pred CcEEEecCcceeec
Confidence 99999999999954
No 144
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=78.24 E-value=15 Score=30.18 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=45.1
Q ss_pred CCceecccccCCCc--EEEEEEeeeEEEEEEeCCCCeE-EEEEecCccEEEEcCCCEEEEEeCCCcEEE
Q 046186 343 RNAMMVPHWNLNAH--SIMYAISGSCHVQVVDSYGRSV-YDGEVRRGQIMVVPQNFAVVKRAGGAEFEW 408 (436)
Q Consensus 343 ~gam~~PHwh~~A~--ei~yV~~G~grv~vv~~~G~~~-~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~ 408 (436)
|-+++..| +..+- ..+-|++|+.++...+++|... -.--+.+|+..+||...+|.+..-+++++|
T Consensus 12 P~~l~~~H-~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f 79 (82)
T PF09313_consen 12 PAALLERH-NTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRF 79 (82)
T ss_dssp -GGGGSSB-CCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EE
T ss_pred cHHHHhhc-CCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEE
Confidence 55677778 34554 4577999999999999987521 122368999999999999999776666665
No 145
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=78.02 E-value=5.9 Score=38.95 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=32.5
Q ss_pred CCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186 354 NAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA 401 (436)
Q Consensus 354 ~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a 401 (436)
++..+.|+++|.+.+. ++ ...+ .+++||+++||.+-+|....
T Consensus 48 ~~~~i~~~~~G~~~~~-~~---~~~~--~~~~g~~i~i~p~~~h~~~~ 89 (290)
T PRK10572 48 KGYILNLTIRGQGVIF-NG---GRAF--VCRPGDLLLFPPGEIHHYGR 89 (290)
T ss_pred cceEEEEEEeccEEEe-cC---CeeE--ecCCCCEEEECCCCceeecc
Confidence 4568899999999975 22 2223 49999999999999997633
No 146
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=77.36 E-value=11 Score=37.82 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=43.2
Q ss_pred ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186 64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ 143 (436)
Q Consensus 64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~ 143 (436)
+..+.+.++++...... .-.++..+++|++| ++++.. . .....|++
T Consensus 232 ~~~F~~~~~~~~~~~~~--~~~~~~~il~v~~G----~~~i~~--~--------------------------~~~~~l~~ 277 (302)
T TIGR00218 232 TEYFSVYKWDISGKAEF--IQQQSALILSVLEG----SGRIKS--G--------------------------GKTLPLKK 277 (302)
T ss_pred CCCeEEEEEEeCCceee--ccCCCcEEEEEEcc----eEEEEE--C--------------------------CEEEEEec
Confidence 44577788888654211 11348899999999 988752 1 12478999
Q ss_pred CcEEEeCCCCeEEEe
Q 046186 144 GDIFALPAGVAHWCY 158 (436)
Q Consensus 144 GDv~~iPaG~~h~~~ 158 (436)
|++++|||+...+..
T Consensus 278 G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 278 GESFFIPAHLGPFTI 292 (302)
T ss_pred ccEEEEccCCccEEE
Confidence 999999999866655
No 147
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=77.27 E-value=11 Score=37.02 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=45.0
Q ss_pred ceEEEEEEecCCce-ecCe----eec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceee
Q 046186 66 GVAVVRHTIRQKGL-LLPQ----FSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIR 139 (436)
Q Consensus 66 gv~~~r~~i~pg~l-~~Ph----~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~ 139 (436)
++.+.++...+..+ ..+. .+. .-.++++++| ++.+.. ..+..
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G----~~~~~~----------------------------~g~~~ 91 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSG----HAIIEQ----------------------------DDRQV 91 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecc----eEEEEE----------------------------CCeEE
Confidence 46777777766544 3322 222 2346677888 777653 23468
Q ss_pred eeccCcEEEeCCCCeEEEeccCCCcE
Q 046186 140 RFRQGDIFALPAGVAHWCYNEGSTPV 165 (436)
Q Consensus 140 ~l~~GDv~~iPaG~~h~~~N~g~e~l 165 (436)
.+++||++++|++.+|.+.-.++...
T Consensus 92 ~l~~G~~~l~~~~~p~~~~~~~~~~~ 117 (302)
T PRK09685 92 QLAAGDITLIDASRPCSIYPQGLSEQ 117 (302)
T ss_pred EEcCCCEEEEECCCCcEeecCCCcee
Confidence 99999999999999998765544333
No 148
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=77.03 E-value=4.2 Score=39.10 Aligned_cols=63 Identities=22% Similarity=0.146 Sum_probs=47.0
Q ss_pred EecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCC
Q 046186 73 TIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAG 152 (436)
Q Consensus 73 ~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG 152 (436)
.=.|+.-.--|..+.+|++|-.+| ...+-++..|- .+...+++||+|.+|+-
T Consensus 39 VGGPN~RkdyHieegeE~FyQ~KG----dMvLKVie~g~------------------------~rDivI~qGe~flLPar 90 (279)
T KOG3995|consen 39 VGGPNTRKDYHIEEGEEVFYQLKG----DMVLKVLEQGK------------------------HRDVVIRQGEIFLLPAR 90 (279)
T ss_pred ecCCCcccccccCCcchhheeecC----ceEEeeeccCc------------------------ceeeEEecCcEEEeccC
Confidence 334555555666779999999999 99999886531 12467899999999999
Q ss_pred CeEEEeccCCC
Q 046186 153 VAHWCYNEGST 163 (436)
Q Consensus 153 ~~h~~~N~g~e 163 (436)
++|.-.--.|+
T Consensus 91 VpHSPqRFant 101 (279)
T KOG3995|consen 91 VPHSPQRFANT 101 (279)
T ss_pred CCCChhhhccc
Confidence 99986544343
No 149
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=75.73 E-value=19 Score=34.95 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=46.1
Q ss_pred eEEEEEEecCCceecCeeecCCceEEEEecccceEEEE--EeeCCCCCCcccCCCCCCCCccCCccccccc------cee
Q 046186 67 VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSH--GDPFPGYPETYQSPQQGGFGESAGRSQQDSH------QKI 138 (436)
Q Consensus 67 v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~--g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~------~k~ 138 (436)
++--.+.+.+|-+.+.|+|..-.==+|-+| -|.+ .+-... ++.-.+.. ..-.-..|.. ...
T Consensus 87 YAEKim~~~~~Q~tP~H~H~~K~EDIINRG----GG~L~i~l~~s~-~~~~~~~~------~~v~V~~DG~~~t~~aG~~ 155 (225)
T PF07385_consen 87 YAEKIMIVREGQVTPMHFHWKKMEDIINRG----GGNLVIELYNSD-PDGELDAD------TDVTVPVDGIRRTVPAGTQ 155 (225)
T ss_dssp EEEEEEEE-BT-EEEEEEESS--EEEEEEE----ES-EEEEEEEB---TTSSB-S------S-EEEEETTEEEEE-TT-E
T ss_pred chhhheeccCCCcCCcccCcchhhheeecC----CceEEEEEEecc-CCCccccC------CCeEEecCCcEEEecCCce
Confidence 444557778888999999984444455665 3443 332211 10000000 0000011111 125
Q ss_pred eeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCC
Q 046186 139 RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANND 177 (436)
Q Consensus 139 ~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~ 177 (436)
.+|.+|..+-+++|+-||+.-.+.. ++|.=+.+.|..
T Consensus 156 l~L~PGESiTL~Pg~yH~Fw~e~g~--vLigEVStvNDD 192 (225)
T PF07385_consen 156 LRLNPGESITLPPGIYHWFWGEGGD--VLIGEVSTVNDD 192 (225)
T ss_dssp EEE-TT-EEEE-TTEEEEEEE-TTS--EEEEEEEE---T
T ss_pred EEeCCCCeEeeCCCCeeeEEecCCC--EEEEeeecccCC
Confidence 7899999999999999999975444 555555555544
No 150
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=75.52 E-value=34 Score=31.66 Aligned_cols=89 Identities=11% Similarity=-0.005 Sum_probs=53.5
Q ss_pred cceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186 65 AGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ 143 (436)
Q Consensus 65 ~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~ 143 (436)
..+.+..+...||-...+|=|. +.-++.|++| ...-..-... .. +........+...+..
T Consensus 73 ~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G----~l~e~~y~~~--------~~-------~~~~~~~~~~~~~~~~ 133 (175)
T PF05995_consen 73 ERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSG----ELEETRYRRP--------DD-------GGAPLELVGRERLLPG 133 (175)
T ss_dssp CT-EEEEEEE-TT-B--EEE-TTSEEEEEEEES----EEEEEEEEES--------TS-------SS-EEEECEEEEEETT
T ss_pred CCeEEEEEEeCCCCcCCCCCCCCceEEEEEecc----eEEEEEeccC--------Cc-------ccCcccccCceEecCC
Confidence 3578888999999999999998 7889999999 6554432110 00 0000000112345688
Q ss_pred CcEEEeCCCCeEEEeccC-CCcEEEEEEEe
Q 046186 144 GDIFALPAGVAHWCYNEG-STPVVAVVLLD 172 (436)
Q Consensus 144 GDv~~iPaG~~h~~~N~g-~e~l~~v~~~d 172 (436)
|.++.++.+..|-+.|.+ +++++-+=++.
T Consensus 134 g~~~~~~~~~iH~v~n~s~~~~avSLHvYs 163 (175)
T PF05995_consen 134 GVTYIFDPHGIHRVENPSGDEPAVSLHVYS 163 (175)
T ss_dssp TEEEEBTTTBEEEEEES-SSS-EEEEEEEE
T ss_pred CeEEecCCCCeEEeccCCCCCCEEEEEEcC
Confidence 888899999999998876 78877665554
No 151
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=75.46 E-value=13 Score=31.83 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=45.6
Q ss_pred CceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCC--EEEE-EeCC-CcEEEEE
Q 046186 344 NAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF--AVVK-RAGG-AEFEWIS 410 (436)
Q Consensus 344 gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~--~h~~-~ag~-e~~~~l~ 410 (436)
++-+.+|=|.+-.-+.||++|+.+= .|+.|+. ..|++|||-++=+|- .|.. +++. ..++.+=
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H--~Ds~G~~---~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQ 104 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRH--RDSLGNR---GVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQ 104 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEE--EETTSEE---EEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEE--ECCCCCe---eEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEE
Confidence 6667899998888899999987654 4888876 358999999999884 4666 5555 5666653
No 152
>PLN02288 mannose-6-phosphate isomerase
Probab=75.25 E-value=7.3 Score=41.00 Aligned_cols=59 Identities=15% Similarity=0.292 Sum_probs=41.9
Q ss_pred ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186 66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD 145 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD 145 (436)
..++.++++.++.-....-.+++.|++|++| ++++.. .+ ..+...|++|+
T Consensus 333 eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G----~~~i~~--~~------------------------~~~~~~l~~G~ 382 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAVPGPSVFLVIEG----EGVLST--GS------------------------SEDGTAAKRGD 382 (394)
T ss_pred ceEEEEEEeCCCCeEeecCCCCCEEEEEEcC----EEEEec--CC------------------------ccceEEEecee
Confidence 4678888888775422222568999999999 988752 10 11236799999
Q ss_pred EEEeCCCCe
Q 046186 146 IFALPAGVA 154 (436)
Q Consensus 146 v~~iPaG~~ 154 (436)
+++||++..
T Consensus 383 ~~fv~a~~~ 391 (394)
T PLN02288 383 VFFVPAGTE 391 (394)
T ss_pred EEEEeCCCc
Confidence 999999764
No 153
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=75.13 E-value=10 Score=29.29 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=31.9
Q ss_pred CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEE
Q 046186 355 AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVV 391 (436)
Q Consensus 355 A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vV 391 (436)
...+.||++|.+++...+.+|+......+.+||++=.
T Consensus 17 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~ 53 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGE 53 (91)
T ss_dssp ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESG
T ss_pred CCEEEEEEECceEEEeceecceeeeecceeeeccccc
Confidence 6789999999999999999988766777899998643
No 154
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=74.47 E-value=6.9 Score=40.63 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=48.4
Q ss_pred ccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCC-----CCCCcccCCCCCCCCccCCcccccc
Q 046186 60 EQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFP-----GYPETYQSPQQGGFGESAGRSQQDS 134 (436)
Q Consensus 60 p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~p-----g~~et~~~~~~~~~~~~~~~~~~d~ 134 (436)
|..+..++-+. -..+||-+.|||-..+- |++||+- +=+-.+--+ -||... ....+.
T Consensus 114 P~wr~ddiMIS--~a~~GGgvg~H~D~YDV--fliQg~G--~RRW~v~~~~~~~~~~~~~d-------------~~~~~~ 174 (383)
T COG2850 114 PDWRIDDIMIS--FAAPGGGVGPHFDQYDV--FLIQGQG--RRRWRVGKKCNMSTLCPHPD-------------LLILAP 174 (383)
T ss_pred ccccccceEEE--EecCCCccCccccchhe--eEEeecc--cceeecCCcccccCcCCCcc-------------hhhcCC
Confidence 44444444443 67899999999988765 5555521 333332111 111000 000000
Q ss_pred -cce-eeeeccCcEEEeCCCCeEEEeccCCC
Q 046186 135 -HQK-IRRFRQGDIFALPAGVAHWCYNEGST 163 (436)
Q Consensus 135 -~~k-~~~l~~GDv~~iPaG~~h~~~N~g~e 163 (436)
+.- ...+.+|||++||+|++|+-+..++-
T Consensus 175 f~~~~d~vlepGDiLYiPp~~~H~gvae~dc 205 (383)
T COG2850 175 FEPDIDEVLEPGDILYIPPGFPHYGVAEDDC 205 (383)
T ss_pred CCchhhhhcCCCceeecCCCCCcCCcccccc
Confidence 011 26789999999999999998877443
No 155
>COG1741 Pirin-related protein [General function prediction only]
Probab=74.26 E-value=7.5 Score=38.97 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=52.1
Q ss_pred EEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEe
Q 046186 71 RHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFAL 149 (436)
Q Consensus 71 r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~i 149 (436)
-..+.||.-+.||-|. -.-+.||++| +.... |+-.....+++|||-..
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G----~i~Hr---------------------------DS~Gn~~~i~pGdvqwM 96 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDG----EIEHR---------------------------DSLGNKGVIRPGDVQWM 96 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEcc----EEEEe---------------------------ecCCceeeecccceeEE
Confidence 4568899999999998 7888999999 76654 22233578999999999
Q ss_pred CC--CCeEEEecc--CCCcEEEEEE
Q 046186 150 PA--GVAHWCYNE--GSTPVVAVVL 170 (436)
Q Consensus 150 Pa--G~~h~~~N~--g~e~l~~v~~ 170 (436)
-| |+.|.-+|. .+.++..+-+
T Consensus 97 TAG~GI~HSE~~~~~~~~~l~~~Ql 121 (276)
T COG1741 97 TAGSGIVHSEMNPPSTGKPLHGLQL 121 (276)
T ss_pred cCCCceeecccCCccCCCccceeee
Confidence 98 578888886 3345665543
No 156
>PLN02288 mannose-6-phosphate isomerase
Probab=74.08 E-value=8.6 Score=40.47 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=40.7
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCE
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFA 396 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~ 396 (436)
++++.++.+.+|.-.. ..-....+|+.|++|++++.. ..+.. ...|++|++++||++..
T Consensus 333 eF~v~~~~l~~~~~~~-~~~~~gp~Illv~~G~~~i~~--~~~~~--~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 333 EFEVDHCDVPPGASVV-FPAVPGPSVFLVIEGEGVLST--GSSED--GTAAKRGDVFFVPAGTE 391 (394)
T ss_pred ceEEEEEEeCCCCeEe-ecCCCCCEEEEEEcCEEEEec--CCccc--eEEEeceeEEEEeCCCc
Confidence 6778888887775321 121356799999999998852 22222 23499999999998754
No 157
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=74.08 E-value=22 Score=32.98 Aligned_cols=75 Identities=24% Similarity=0.227 Sum_probs=49.6
Q ss_pred eEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcE
Q 046186 67 VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDI 146 (436)
Q Consensus 67 v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv 146 (436)
+++..+++.||-+.+||=|-.--++=|++| +.-..+.+-..+.--.+ + ..-....+|.|
T Consensus 73 ltV~~~t~~PG~~~p~HnH~~wglVgil~G-----~E~n~~y~~~~~~~~~P--------------~--~qdk~~apgeV 131 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHLMWGLVGILWG-----GETNFIYPLAGEEVDEP--------------E--RQDKFAAPGEV 131 (191)
T ss_pred EEEEEEEeCCCcccCCcccchheeeeeeec-----ccccceecccCCCCCCc--------------c--hhhhhcCcceE
Confidence 789999999999999999998888899999 55444444221100000 0 01235667777
Q ss_pred EEeCCCCeEEEeccCCC
Q 046186 147 FALPAGVAHWCYNEGST 163 (436)
Q Consensus 147 ~~iPaG~~h~~~N~g~e 163 (436)
- +.+|..|...|.+..
T Consensus 132 ~-lSpgdihsv~n~~sd 147 (191)
T COG5553 132 H-LSPGDIHSVANTGSD 147 (191)
T ss_pred e-eCCCCeeeecccCCC
Confidence 6 444777888887754
No 158
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=70.66 E-value=10 Score=31.52 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=19.6
Q ss_pred CCeEEEEEecCccEEEEcCCCEEEE-EeCC
Q 046186 375 GRSVYDGEVRRGQIMVVPQNFAVVK-RAGG 403 (436)
Q Consensus 375 G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~ 403 (436)
|=.+....-++||.+|||.|..|.. |.|.
T Consensus 77 gi~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 77 GIPVYRFVQKPGEFVFIPPGAYHQVFNLGD 106 (114)
T ss_dssp TS--EEEEEETT-EEEE-TT-EEEEEESSS
T ss_pred CcccccceECCCCEEEECCCceEEEEeCCc
Confidence 3346677789999999999999987 6664
No 159
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=70.61 E-value=32 Score=32.73 Aligned_cols=81 Identities=14% Similarity=-0.021 Sum_probs=56.1
Q ss_pred ccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE--EeCCCcEE
Q 046186 330 RWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK--RAGGAEFE 407 (436)
Q Consensus 330 ~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~--~ag~e~~~ 407 (436)
-.++..+....+.+|-+.--.=. .++.+.+|++|.+++...+++|+..+-.-+.+||+|=...+.++.. .|- ++.+
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~-~ds~ 109 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAI-VDTT 109 (230)
T ss_pred ccccceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEc-CceE
Confidence 34567778888888866544322 3667899999999999999999876666689999886655544322 332 4455
Q ss_pred EEEEE
Q 046186 408 WISFK 412 (436)
Q Consensus 408 ~l~f~ 412 (436)
++.+.
T Consensus 110 v~~i~ 114 (230)
T PRK09391 110 VRLIK 114 (230)
T ss_pred EEEEE
Confidence 55544
No 160
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=69.95 E-value=18 Score=33.37 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=31.4
Q ss_pred ccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccC
Q 046186 217 CGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVAR 259 (436)
Q Consensus 217 ~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~ 259 (436)
--++.+-||.-+|++++++.|+.++-...|.|-.-.+.+.++.
T Consensus 167 ~~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~~~~~~i~i~~ 209 (211)
T PRK11753 167 IKITRQEIGRIVGCSREMVGRVLKMLEDQGLISAHGKTIVVYG 209 (211)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEec
Confidence 3688899999999999999998766665665543334565543
No 161
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=68.57 E-value=47 Score=30.56 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=49.2
Q ss_pred EEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcC----CCEE--EEEeCCCcEEEEE
Q 046186 337 ERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQ----NFAV--VKRAGGAEFEWIS 410 (436)
Q Consensus 337 ~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~----g~~h--~~~ag~e~~~~l~ 410 (436)
....+.+|.+.-..= -.++.+.+|++|.+++...+.+|+.+.-..+.+||+|-... ..++ ...| .++.+++.
T Consensus 21 ~~~~~~kg~~l~~~g-~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a-~~~~~v~~ 98 (211)
T PRK11753 21 HIHKYPAKSTLIHAG-EKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRA-KTACEVAE 98 (211)
T ss_pred eEEEeCCCCEEEeCC-CCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEE-cCcEEEEE
Confidence 455667776664332 23568999999999999989889877777899999984432 2122 2233 34566666
Q ss_pred EE
Q 046186 411 FK 412 (436)
Q Consensus 411 f~ 412 (436)
+-
T Consensus 99 i~ 100 (211)
T PRK11753 99 IS 100 (211)
T ss_pred Ec
Confidence 54
No 162
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=67.67 E-value=20 Score=34.29 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=47.2
Q ss_pred EEEecCCceecCeeecCC---ceEEEE--ecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccc--eeeeecc
Q 046186 71 RHTIRQKGLLLPQFSNSP---QLVYIL--QAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQ--KIRRFRQ 143 (436)
Q Consensus 71 r~~i~pg~l~~Ph~h~a~---ei~yV~--~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~--k~~~l~~ 143 (436)
...+++|+...+|.|+.. -++||. .+ .|.+.+.+|.....+..+.... ..+ ...+ ....-++
T Consensus 100 ~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~----~g~~~f~~p~~~~~~~~~~~~~-----~~~--~~~~~~~~v~P~~ 168 (201)
T TIGR02466 100 VNILPQGGTHSPHLHPGSVISGTYYVQTPEN----CGAIKFEDPRLDDMMAAPMRIP-----NAK--RAVQRFVYVPPQE 168 (201)
T ss_pred EEEcCCCCccCceECCCceEEEEEEEeCCCC----CCceeEecCcchhhhccccccC-----ccc--cccCccEEECCCC
Confidence 345678889999999943 445554 22 3344444443221111000000 000 0001 1245599
Q ss_pred CcEEEeCCCCeEEEe-ccCCCcEEEEEEEe
Q 046186 144 GDIFALPAGVAHWCY-NEGSTPVVAVVLLD 172 (436)
Q Consensus 144 GDv~~iPaG~~h~~~-N~g~e~l~~v~~~d 172 (436)
||++++|.-+-|... |.++++=+.| .||
T Consensus 169 G~lvlFPS~L~H~v~p~~~~~~RISi-SFN 197 (201)
T TIGR02466 169 GRVLLFESWLRHEVPPNESEEERISV-SFN 197 (201)
T ss_pred CeEEEECCCCceecCCCCCCCCEEEE-EEe
Confidence 999999999999976 4554433333 365
No 163
>COG1741 Pirin-related protein [General function prediction only]
Probab=67.52 E-value=14 Score=36.99 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=55.6
Q ss_pred EEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCE--EEE-Ee-CC-CcEEEEEEE
Q 046186 338 RGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFA--VVK-RA-GG-AEFEWISFK 412 (436)
Q Consensus 338 ~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~--h~~-~a-g~-e~~~~l~f~ 412 (436)
...+.||.-+.||=|..=.-+.||++|+.+-+ |+-|+. ..+++|||-..=+|.. |.. +. +. +.+..+=.-
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn~---~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlW 122 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGNK---GVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLW 122 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCce---eeecccceeEEcCCCceeecccCCccCCCccceeeee
Confidence 56688999999999999889999999996665 777776 3489999999999986 555 43 23 456665555
Q ss_pred ecC
Q 046186 413 TND 415 (436)
Q Consensus 413 ~s~ 415 (436)
.+.
T Consensus 123 v~l 125 (276)
T COG1741 123 VNL 125 (276)
T ss_pred cCC
Confidence 444
No 164
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=64.28 E-value=1.1e+02 Score=28.18 Aligned_cols=74 Identities=15% Similarity=0.316 Sum_probs=46.0
Q ss_pred EEEecCCceecccccCC-CcEEEEEEe-eeEEEEEEeCCCCe---EEEEEecCccE--EEEcCC-CEEEE-EeCCCcEEE
Q 046186 338 RGLLHRNAMMVPHWNLN-AHSIMYAIS-GSCHVQVVDSYGRS---VYDGEVRRGQI--MVVPQN-FAVVK-RAGGAEFEW 408 (436)
Q Consensus 338 ~v~L~~gam~~PHwh~~-A~ei~yV~~-G~grv~vv~~~G~~---~~~~~l~~Gdv--~vVP~g-~~h~~-~ag~e~~~~ 408 (436)
+--|+++. --|||.+ |+|+-++.. +.+.+.++. +|.. ++--+++.|++ +|||+| |.-.. ..| ++..+
T Consensus 48 YyLLe~~~--~s~~HRv~a~eiwHf~ag~pl~~~l~~-dG~~~s~~LG~d~~~Ge~~Q~vVP~g~w~aS~~~~g-~~~tL 123 (162)
T COG3542 48 YYLLEEDN--ISAWHRVTADEIWHFYAGAPLELHLSE-DGGAESFTLGPDLEKGERPQYVVPAGTWWASAVSLG-EDYTL 123 (162)
T ss_pred EEEecCCc--cchheecchhheEEEecCCceEEEEEe-CCCeEEEEecccccCCceeEEEEeCCcEEEEEEecC-CCceE
Confidence 44457777 3489987 787655554 466777776 7753 33445788887 799999 44333 333 35566
Q ss_pred EEEEecC
Q 046186 409 ISFKTND 415 (436)
Q Consensus 409 l~f~~s~ 415 (436)
|+.....
T Consensus 124 VgCtVaP 130 (162)
T COG3542 124 VGCTVAP 130 (162)
T ss_pred EEEEecC
Confidence 6665543
No 165
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=64.09 E-value=38 Score=26.77 Aligned_cols=55 Identities=16% Similarity=0.057 Sum_probs=39.7
Q ss_pred EEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcC
Q 046186 338 RGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQ 393 (436)
Q Consensus 338 ~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~ 393 (436)
...+.+|-+. -+-.-.++.+.++.+|.+.+...+.+|+......+.+||+|=...
T Consensus 19 ~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~ 73 (120)
T smart00100 19 PVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELA 73 (120)
T ss_pred EEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhh
Confidence 3455566543 111223567999999999999998888877778899999886654
No 166
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=63.96 E-value=31 Score=32.97 Aligned_cols=81 Identities=20% Similarity=0.158 Sum_probs=59.9
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCC---------Ce------EEEEEecC--ccEEEEcCC-
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYG---------RS------VYDGEVRR--GQIMVVPQN- 394 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G---------~~------~~~~~l~~--Gdv~vVP~g- 394 (436)
.+++...-|.+|+.+.+|=||.=+-+.-|+.|+++|..+|.-- .. +.+.++.+ .-.+.-|+.
T Consensus 43 ~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~g 122 (200)
T PF07847_consen 43 DFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTSG 122 (200)
T ss_pred CcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCCC
Confidence 6778888899999999999999999999999999999877521 01 12222332 235556765
Q ss_pred -CEEEEEeCCCcEEEEEEEe
Q 046186 395 -FAVVKRAGGAEFEWISFKT 413 (436)
Q Consensus 395 -~~h~~~ag~e~~~~l~f~~ 413 (436)
-.|.+.|.++++.||-+..
T Consensus 123 gNiH~f~a~~~p~AflDIL~ 142 (200)
T PF07847_consen 123 GNIHEFTALTGPCAFLDILA 142 (200)
T ss_pred CeeEEEEeCCCCeEEEEEcc
Confidence 6788877777888887764
No 167
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.87 E-value=48 Score=34.48 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=44.3
Q ss_pred cceEEEEEEecCCceecCeeec--CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186 65 AGVAVVRHTIRQKGLLLPQFSN--SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR 142 (436)
Q Consensus 65 ~gv~~~r~~i~pg~l~~Ph~h~--a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~ 142 (436)
.||++..-.+ -.+|.--++-| .++++|+.+| +.++-... -+..++
T Consensus 123 ~g~~i~~y~~-n~sm~~~~f~NADge~Livpq~G----~l~l~te~----------------------------G~l~v~ 169 (427)
T COG3508 123 DGVAIHVYKV-NESMTKRFFRNADGELLIVPQQG----ELRLKTEL----------------------------GVLEVE 169 (427)
T ss_pred CceEEEEEEc-cccchhhhhhcCCCCEEEEeecc----eEEEEEee----------------------------ceEEec
Confidence 4555543333 34565455554 7889999999 76654211 157999
Q ss_pred cCcEEEeCCCCeEEEeccCCC
Q 046186 143 QGDIFALPAGVAHWCYNEGST 163 (436)
Q Consensus 143 ~GDv~~iPaG~~h~~~N~g~e 163 (436)
+||+-+||.|+.+-..=.+.+
T Consensus 170 pgeiavIPRG~~frve~~~~~ 190 (427)
T COG3508 170 PGEIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred CCcEEEeeCCceEEEEecCCc
Confidence 999999999999887654444
No 168
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=62.84 E-value=30 Score=27.37 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=40.5
Q ss_pred EEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcC
Q 046186 337 ERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQ 393 (436)
Q Consensus 337 ~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~ 393 (436)
....+.+|.+.--.= .....+.++++|...+...+++|+...-..+.+|+++=.+.
T Consensus 18 ~~~~~~~g~~l~~~~-~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~ 73 (115)
T cd00038 18 EERRFPAGEVIIRQG-DPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELA 73 (115)
T ss_pred eeeeeCCCCEEEcCC-CCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHH
Confidence 445566666551111 12467999999999999999988877777899999886643
No 169
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=61.68 E-value=56 Score=28.61 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=24.8
Q ss_pred ceeeeeccCcEEEeCCCCeEEEeccCCCcEEEE
Q 046186 136 QKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAV 168 (436)
Q Consensus 136 ~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v 168 (436)
.+...+.+||+++++++.++.+.-.++.....+
T Consensus 72 g~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l 104 (172)
T PF14525_consen 72 GREVELAPGDVVLLDPGQPYRLEFSAGCRQLSL 104 (172)
T ss_pred CEEEEEcCCeEEEEcCCCCEEEEECCCccEEEE
Confidence 346899999999999999988776544444333
No 170
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=60.78 E-value=42 Score=30.74 Aligned_cols=43 Identities=21% Similarity=0.135 Sum_probs=32.5
Q ss_pred ccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccC
Q 046186 217 CGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVAR 259 (436)
Q Consensus 217 ~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~ 259 (436)
-.++.+-||..+|++++++.++.++-...|.|-.-.+.+.++.
T Consensus 148 ~~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~~~i~I~d 190 (202)
T PRK13918 148 IYATHDELAAAVGSVRETVTKVIGELSREGYIRSGYGKIQLLD 190 (202)
T ss_pred ecCCHHHHHHHhCccHHHHHHHHHHHHHCCCEEcCCCEEEEEC
Confidence 4789999999999999999998766666676653334565554
No 171
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=60.03 E-value=18 Score=34.36 Aligned_cols=52 Identities=8% Similarity=0.009 Sum_probs=38.0
Q ss_pred EecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEc
Q 046186 340 LLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVP 392 (436)
Q Consensus 340 ~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP 392 (436)
.+.+|-+.-..= -....+.+|++|.+++..++.+|+..+-..+.+||+|=-.
T Consensus 35 ~~~kge~l~~~G-~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 35 HFLAREYIVQEG-QQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred eeCCCCEEEcCC-CCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 445554442211 1356799999999999999999988777778999988654
No 172
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=59.18 E-value=24 Score=34.76 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=41.0
Q ss_pred cceEEEEEecCCcee-c----ccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186 333 QLSAERGLLHRNAMM-V----PHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA 401 (436)
Q Consensus 333 ~ls~~~v~L~~gam~-~----PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a 401 (436)
++.+..+.-.+..+. . .|-+.....++++++|.+++.+- |+. ..+.+||++++|.+.||....
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~---g~~---~~l~~G~~~l~~~~~p~~~~~ 111 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQD---DRQ---VQLAAGDITLIDASRPCSIYP 111 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEEC---CeE---EEEcCCCEEEEECCCCcEeec
Confidence 455556655554222 2 23333344578889999887643 232 349999999999999987644
No 173
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=58.23 E-value=14 Score=37.68 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=26.8
Q ss_pred EEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEE
Q 046186 368 VQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWI 409 (436)
Q Consensus 368 v~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l 409 (436)
.+++|+.--+.+. |++||.+|+|+|-+|+...| -.+|..
T Consensus 149 ~~~~d~~lLn~v~--lkpGe~~fl~Agt~HA~~~G-~~lEvm 187 (312)
T COG1482 149 GGLFDPLLLNRVK--LKPGEAFFLPAGTPHAYLKG-LVLEVM 187 (312)
T ss_pred ccccchhhhcEEe--cCCCCEEEecCCCceeeccc-eEEEEE
Confidence 4444433333444 99999999999999998776 444443
No 174
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=57.93 E-value=1.2e+02 Score=25.72 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=39.8
Q ss_pred eEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186 67 VAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD 145 (436)
Q Consensus 67 v~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD 145 (436)
-....-.|.||- -++.. ++|+.-|+.| ...+-+ ||-. ....+++|+
T Consensus 23 ~~~TlGVm~pGe---Y~F~T~~~E~M~vvsG----~l~V~l--pg~~------------------------ew~~~~aGe 69 (94)
T PF06865_consen 23 SKKTLGVMLPGE---YTFGTSAPERMEVVSG----ELEVKL--PGED------------------------EWQTYSAGE 69 (94)
T ss_dssp EEEEEEEE-SEC---EEEEESS-EEEEEEES----EEEEEE--TT-S------------------------S-EEEETT-
T ss_pred CcceEEEEeeeE---EEEcCCCCEEEEEEEe----EEEEEc--CCCc------------------------ccEEeCCCC
Confidence 444445566665 34555 9999999999 777764 5421 257899999
Q ss_pred EEEeCCCCeEEEecc
Q 046186 146 IFALPAGVAHWCYNE 160 (436)
Q Consensus 146 v~~iPaG~~h~~~N~ 160 (436)
.|.||++..+-+.-.
T Consensus 70 sF~VpanssF~v~v~ 84 (94)
T PF06865_consen 70 SFEVPANSSFDVKVK 84 (94)
T ss_dssp EEEE-TTEEEEEEES
T ss_pred eEEECCCCeEEEEEC
Confidence 999999998877654
No 175
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=56.70 E-value=62 Score=24.99 Aligned_cols=56 Identities=16% Similarity=0.060 Sum_probs=39.5
Q ss_pred EecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCC
Q 046186 73 TIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAG 152 (436)
Q Consensus 73 ~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG 152 (436)
+|.||..+..+-. +...+-|.+| +.-++. .|++ .-+-|++||.+.+++|
T Consensus 3 ~L~~g~~~~lr~~-~~~~l~v~~G----~vWlT~--~g~~------------------------~D~~L~~G~~l~l~~g 51 (63)
T PF11142_consen 3 ELAPGETLSLRAA-AGQRLRVESG----RVWLTR--EGDP------------------------DDYWLQAGDSLRLRRG 51 (63)
T ss_pred EeCCCceEEeEcC-CCcEEEEccc----cEEEEC--CCCC------------------------CCEEECCCCEEEeCCC
Confidence 5666666555433 4445889999 888874 2222 1389999999999999
Q ss_pred CeEEEec
Q 046186 153 VAHWCYN 159 (436)
Q Consensus 153 ~~h~~~N 159 (436)
---|+..
T Consensus 52 ~~vvl~a 58 (63)
T PF11142_consen 52 GRVVLSA 58 (63)
T ss_pred CEEEEEe
Confidence 8888764
No 176
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=56.32 E-value=22 Score=32.28 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=31.8
Q ss_pred CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEE
Q 046186 355 AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVV 391 (436)
Q Consensus 355 A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vV 391 (436)
++.+.+|++|.+++...+++|+...-..+.+||+|=.
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 4578999999999999999998876777999998743
No 177
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=55.62 E-value=62 Score=30.89 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=25.9
Q ss_pred eeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186 138 IRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVAN 175 (436)
Q Consensus 138 ~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n 175 (436)
..+|++|..+.+|+|+-||+..-+. -++|.=..+.|
T Consensus 154 ~lkL~PGesitL~Pg~~HsFwae~g--~vlvgEvSsvn 189 (225)
T COG3822 154 QLKLSPGESITLPPGLYHSFWAEEG--GVLVGEVSSVN 189 (225)
T ss_pred eEEECCCCcEecCCCceeeeeecCC--cEEEEEEeecc
Confidence 4789999999999999999987432 24444333333
No 178
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=55.52 E-value=1e+02 Score=30.62 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=50.5
Q ss_pred eEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEE-EEEEeeeEEEEEEeCCCCe---------EEEEEecC
Q 046186 316 GHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSI-MYAISGSCHVQVVDSYGRS---------VYDGEVRR 385 (436)
Q Consensus 316 G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei-~yV~~G~grv~vv~~~G~~---------~~~~~l~~ 385 (436)
+.++.++..+- .+..+++ ..++|.+|.-.+-- ....|+ +..+.|.+.|++ +|.. +|+ ..
T Consensus 12 ~~~~~i~~~~~-g~~~~~~--~~l~L~~g~~~~~~--~~~~E~~vv~l~G~~~v~~---~g~~~~~l~~R~~vF~---~~ 80 (261)
T PF04962_consen 12 NLVYSITPENA-GWMYMGF--GVLRLEAGESLEFE--LERRELGVVNLGGKATVTV---DGEEFYELGGRESVFD---GP 80 (261)
T ss_dssp --EEECTCCCC-CCCCBEC--CCEEEECCHCCCCC--CCSEEEEEEEESSSEEEEE---TTEEEEEE-TTSSGGG---S-
T ss_pred eEEEEECCCcc-Cccccce--EEEEecCCCEEecc--CCCcEEEEEEeCCEEEEEe---CCceEEEecccccccC---CC
Confidence 34666666554 4443343 46788888665544 345564 456799999987 2322 333 34
Q ss_pred ccEEEEcCCCEEEEEeCCCcEEEEEEEecC
Q 046186 386 GQIMVVPQNFAVVKRAGGAEFEWISFKTND 415 (436)
Q Consensus 386 Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~ 415 (436)
.|.++||+|-...+.|. ++++|....+-+
T Consensus 81 ~d~lYvp~g~~~~i~a~-~~ae~~~~sapa 109 (261)
T PF04962_consen 81 PDALYVPRGTKVVIFAS-TDAEFAVCSAPA 109 (261)
T ss_dssp -EEEEE-TT--EEEEES-STEEEEEEEEE-
T ss_pred CcEEEeCCCCeEEEEEc-CCCEEEEEcccc
Confidence 59999999999888774 447776554443
No 179
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=55.31 E-value=11 Score=28.31 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=32.3
Q ss_pred cCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceecc
Q 046186 218 GFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVA 258 (436)
Q Consensus 218 gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~ 258 (436)
.+..+=||+.|+|+..|+++=...-...|.|.++.++....
T Consensus 14 ~~s~~ela~~~~VS~~TiRRDl~~L~~~g~i~r~~GG~~~~ 54 (57)
T PF08220_consen 14 KVSVKELAEEFGVSEMTIRRDLNKLEKQGLIKRTHGGAVLN 54 (57)
T ss_pred CEEHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCEEEeC
Confidence 46778899999999999987665555568899988876544
No 180
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=54.61 E-value=72 Score=29.10 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=38.7
Q ss_pred eEEEEEecCCceecccccCCCcE--EEEEEeee-EEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCc
Q 046186 335 SAERGLLHRNAMMVPHWNLNAHS--IMYAISGS-CHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAE 405 (436)
Q Consensus 335 s~~~v~L~~gam~~PHwh~~A~e--i~yV~~G~-grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~ 405 (436)
.+....|.||+...||.-+.... +-+-+... ..+.+... .. ....++|+++++=-.|+|.. |.|++.
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~--~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~ 151 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG--GE--TRHWREGECWVFDDSFEHEVWNNGDED 151 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET--TE--EEB--CTEEEEE-TTS-EEEEESSSS-
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC--Ce--EEEeccCcEEEEeCCEEEEEEeCCCCC
Confidence 46777889999999999886543 22233321 22222221 22 23479999999999999987 777653
No 181
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=54.49 E-value=73 Score=30.25 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=89.5
Q ss_pred ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccce-eeeec
Q 046186 64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQK-IRRFR 142 (436)
Q Consensus 64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k-~~~l~ 142 (436)
.++..+....+.+|-.+...=.+...+++|++| ...+..+.++. ... ...+.
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G----~vkl~~~~~~G-----------------------~e~i~~~~~ 85 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESG----AVRTYRLLSDG-----------------------RRQIGAFHL 85 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeC----EEEEEEECCCC-----------------------cEEEEEEec
Confidence 356777888899998877666678999999999 88887766531 112 35668
Q ss_pred cCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcC--CCCCceeeecCCChh-hhhHhhh--------hhh------
Q 046186 143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQL--DRNPRKFHLAGNPHQ-EFQQQRQ--------QER------ 205 (436)
Q Consensus 143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nql--d~~~~~f~laG~~~~-~~~~~~~--------~~~------ 205 (436)
+||+|-...+.++-..-.--++.+++ .++......-+ ++.+..+++.--... ......- +.+
T Consensus 86 ~Gd~fG~~~~~~~~~~~~A~~ds~v~-~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll 164 (230)
T PRK09391 86 PGDVFGLESGSTHRFTAEAIVDTTVR-LIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLL 164 (230)
T ss_pred CCceecccCCCcCCeEEEEcCceEEE-EEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999776654432111112344433 23332211100 112222222100000 0000000 000
Q ss_pred --cccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEc-Cceecc
Q 046186 206 --FGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVR-GQLQVA 258 (436)
Q Consensus 206 --~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~-~~l~~~ 258 (436)
.........+.-.++.+-||..+|++++++.|+.++-.++|.|..-. +.+.+.
T Consensus 165 ~l~~~~g~~~~i~i~lt~~~IA~~lGisretlsR~L~~L~~~GlI~~~~~~~i~I~ 220 (230)
T PRK09391 165 EMDERLGGAGMMALPMSRRDIADYLGLTIETVSRALSQLQDRGLIGLSGARQIELR 220 (230)
T ss_pred HHHHHhCCCCEEEecCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCceEEEc
Confidence 00011112333467889999999999999998876666667664433 346554
No 182
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.83 E-value=1.1e+02 Score=31.86 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=41.8
Q ss_pred cceEEEEEecCCcee-cccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEE
Q 046186 333 QLSAERGLLHRNAMM-VPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKR 400 (436)
Q Consensus 333 ~ls~~~v~L~~gam~-~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ 400 (436)
||++ ++..---+|. .-.+|....+++|+..|+.++- +.-|. ++ |++||+.|||+|.-....
T Consensus 124 g~~i-~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~--te~G~--l~--v~pgeiavIPRG~~frve 185 (427)
T COG3508 124 GVAI-HVYKVNESMTKRFFRNADGELLIVPQQGELRLK--TELGV--LE--VEPGEIAVIPRGTTFRVE 185 (427)
T ss_pred ceEE-EEEEccccchhhhhhcCCCCEEEEeecceEEEE--Eeece--EE--ecCCcEEEeeCCceEEEE
Confidence 4444 3344445666 5557777788999998887654 33333 33 899999999999887653
No 183
>PRK10579 hypothetical protein; Provisional
Probab=53.36 E-value=1.4e+02 Score=25.26 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=42.2
Q ss_pred EEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEE
Q 046186 69 VVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIF 147 (436)
Q Consensus 69 ~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~ 147 (436)
...-.|.||- -++.. ++|+.-|+.| ...+-+ ||.. ....+++|+.|
T Consensus 25 kTlGVm~pGe---y~F~T~~~E~MeivsG----~l~V~L--pg~~------------------------ew~~~~aG~sF 71 (94)
T PRK10579 25 ASVGVMAEGE---YTFSTAEPEEMTVISG----ALNVLL--PGAT------------------------DWQVYEAGEVF 71 (94)
T ss_pred eEEEEEeeeE---EEEcCCCcEEEEEEee----EEEEEC--CCCc------------------------ccEEeCCCCEE
Confidence 3334555655 34555 9999999999 777664 5421 25799999999
Q ss_pred EeCCCCeEEEecc
Q 046186 148 ALPAGVAHWCYNE 160 (436)
Q Consensus 148 ~iPaG~~h~~~N~ 160 (436)
.||++..+-+.-.
T Consensus 72 ~VpanssF~l~v~ 84 (94)
T PRK10579 72 NVPGHSEFHLQVA 84 (94)
T ss_pred EECCCCeEEEEEC
Confidence 9999998877653
No 184
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=49.17 E-value=50 Score=31.25 Aligned_cols=41 Identities=12% Similarity=0.011 Sum_probs=32.9
Q ss_pred CCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccC
Q 046186 219 FDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVAR 259 (436)
Q Consensus 219 f~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~ 259 (436)
++.+-||..+|++++++.|+.++-.++|.|-.-.+.+.++.
T Consensus 170 ~t~~~lA~~lG~sretvsR~L~~L~~~G~I~~~~~~i~I~d 210 (226)
T PRK10402 170 EKHTQAAEYLGVSYRHLLYVLAQFIQDGYLKKSKRGYLIKN 210 (226)
T ss_pred chHHHHHHHHCCcHHHHHHHHHHHHHCCCEEeeCCEEEEeC
Confidence 57799999999999999998877776787776656676653
No 185
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=46.66 E-value=23 Score=34.16 Aligned_cols=47 Identities=19% Similarity=0.561 Sum_probs=38.8
Q ss_pred ccCC-CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE
Q 046186 351 WNLN-AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK 399 (436)
Q Consensus 351 wh~~-A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~ 399 (436)
||.+ ..||.|-.+|.....|++. |.. -|-.+++||+|..|+.-+|.-
T Consensus 48 yHieegeE~FyQ~KGdMvLKVie~-g~~-rDivI~qGe~flLParVpHSP 95 (279)
T KOG3995|consen 48 YHIEEGEEVFYQLKGDMVLKVLEQ-GKH-RDVVIRQGEIFLLPARVPHSP 95 (279)
T ss_pred cccCCcchhheeecCceEEeeecc-Ccc-eeeEEecCcEEEeccCCCCCh
Confidence 5665 4589999999999999984 443 377799999999999999873
No 186
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=45.22 E-value=2.1e+02 Score=28.25 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=60.8
Q ss_pred cCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCcc
Q 046186 47 CEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGES 126 (436)
Q Consensus 47 se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~ 126 (436)
...|.+...++....+.- +.+..+.|.+|....--.-+-+.++.++.| ++.+.. .| .+|..
T Consensus 11 ~~~g~v~~vtp~sagw~Y--VGF~~~~L~~Ges~~~~~~~~E~clV~v~G----k~~vs~--~g--~~f~~--------- 71 (270)
T COG3718 11 AGVGLVQDVTPESAGWEY--VGFRLLRLAAGESATEETGDRERCLVLVTG----KATVSA--HG--STFGE--------- 71 (270)
T ss_pred CCCcceEEecCCCCCcee--EEEEEEEccCCCcccccCCCceEEEEEEee----eEEEee--cc--chHhh---------
Confidence 345666556655555443 566668899999877777778889999999 888763 11 12210
Q ss_pred CCcccccccceeeeeccCcEEEeCCCCeEEEeccCC
Q 046186 127 AGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGS 162 (436)
Q Consensus 127 ~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~ 162 (436)
-|.| ..+++=++=|.+++|+|.+..+....+
T Consensus 72 iG~R-----~SvFe~~p~~~vYvp~g~~~~vtA~t~ 102 (270)
T COG3718 72 IGTR-----MSVFERKPPDSVYVPAGSAFSVTATTD 102 (270)
T ss_pred cccc-----cccccCCCCCeEEecCCceEEEEeecc
Confidence 0111 114566678999999999988876644
No 187
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=44.62 E-value=1.8e+02 Score=25.33 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=33.9
Q ss_pred cEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEec
Q 046186 356 HSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTN 414 (436)
Q Consensus 356 ~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s 414 (436)
--+...++|.++++.- |. ...+.+||+++++.+-++..... .+++.+.+...
T Consensus 56 ~~l~~~~~G~~~~~~~---g~---~~~~~pg~~~l~d~~~~~~~~~~-~~~~~~~l~ip 107 (172)
T PF14525_consen 56 YLLVLPLSGSARIEQG---GR---EVELAPGDVVLLDPGQPYRLEFS-AGCRQLSLRIP 107 (172)
T ss_pred EEEEEEccCCEEEEEC---CE---EEEEcCCeEEEEcCCCCEEEEEC-CCccEEEEEEC
Confidence 3566677777766632 22 34599999999999999877544 34455444433
No 188
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=43.79 E-value=46 Score=31.34 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=37.5
Q ss_pred EEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEE
Q 046186 339 GLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVV 391 (436)
Q Consensus 339 v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vV 391 (436)
..+.+|-+.-.-=- .+..+.+|++|.+++...+.+|+.+.-.-+.+||+|-.
T Consensus 40 ~~~~kge~l~~~Gd-~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKAGD-ELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECCCC-CcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 34555544322211 25678999999999999999998866667789999854
No 189
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=42.57 E-value=1.1e+02 Score=31.29 Aligned_cols=60 Identities=15% Similarity=0.297 Sum_probs=43.2
Q ss_pred ccceEEEEEEecC-CceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186 64 CAGVAVVRHTIRQ-KGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR 142 (436)
Q Consensus 64 ~~gv~~~r~~i~p-g~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~ 142 (436)
+...++.+..+.. ....-. .+..|++|++| .+++-. ..++..|+
T Consensus 239 ~~~F~l~~~~i~~~~~~~~~---~~~~il~v~eG----~~~l~~----------------------------~~~~~~l~ 283 (312)
T COG1482 239 NEDFALYKWDISGTAEFIKQ---ESFSILLVLEG----EGTLIG----------------------------GGQTLKLK 283 (312)
T ss_pred ccceEEEEEeccChhhhccC---CCcEEEEEEcC----eEEEec----------------------------CCEEEEEc
Confidence 3457777777775 112222 28899999999 888752 13478999
Q ss_pred cCcEEEeCCCCeEEEe
Q 046186 143 QGDIFALPAGVAHWCY 158 (436)
Q Consensus 143 ~GDv~~iPaG~~h~~~ 158 (436)
+|+.+.||+...-|..
T Consensus 284 ~G~s~~ipa~~~~~~i 299 (312)
T COG1482 284 KGESFFIPANDGPYTI 299 (312)
T ss_pred CCcEEEEEcCCCcEEE
Confidence 9999999999766654
No 190
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=42.55 E-value=34 Score=37.85 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=27.3
Q ss_pred EEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEE
Q 046186 357 SIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVV 391 (436)
Q Consensus 357 ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vV 391 (436)
-=.|.+.+.|.|+|++.+|+.++...|.+||+|=.
T Consensus 420 dKTFe~~~~G~v~vvd~~G~vl~eh~Ve~GDIwRm 454 (735)
T PF03971_consen 420 DKTFEIPADGTVRVVDESGEVLMEHEVEAGDIWRM 454 (735)
T ss_dssp GGEEE-SSSEEEEEEETTS-EEEEEEE-TT-EEEE
T ss_pred CcceECCCCcEEEEEeCCCCEEEEeeecCCcchhh
Confidence 34678899999999999999999999999999854
No 191
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=42.37 E-value=49 Score=29.77 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=42.5
Q ss_pred CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCC-----EEEEEeCCCcEEEEEEE
Q 046186 355 AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF-----AVVKRAGGAEFEWISFK 412 (436)
Q Consensus 355 A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~-----~h~~~ag~e~~~~l~f~ 412 (436)
+..+.+|++|..++...+++|+...-..+.+||+|=...-+ .+...|-.+ .+++.+.
T Consensus 41 ~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~-~~~~~~~ 102 (214)
T COG0664 41 ADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVALTD-VEVLEIP 102 (214)
T ss_pred CceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEEcce-EEEEEec
Confidence 44589999999999999999988777789999999877544 233344444 5555553
No 192
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=39.78 E-value=68 Score=24.53 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=23.8
Q ss_pred EecCCceecCeeecCCceEEEEecccceEEEEEeeCC
Q 046186 73 TIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFP 109 (436)
Q Consensus 73 ~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~p 109 (436)
++.+|..+...-.+...++||++| ...+.....
T Consensus 3 ~~~~g~~i~~~g~~~~~~~~i~~G----~v~~~~~~~ 35 (91)
T PF00027_consen 3 TYKKGEVIYRQGDPCDHIYIILSG----EVKVSSINE 35 (91)
T ss_dssp EESTTEEEEETTSBESEEEEEEES----EEEEEEETT
T ss_pred EECCCCEEEeCCCcCCEEEEEEEC----ceEEEecee
Confidence 456666655555568999999999 888776544
No 193
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=39.59 E-value=1.2e+02 Score=24.42 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=36.8
Q ss_pred EEEecCCceecccccC---CCcE--EEEEEe-ee-----EEEEEEeCC--CCeEEEEE-----ecCccEEEEcC-CCEEE
Q 046186 338 RGLLHRNAMMVPHWNL---NAHS--IMYAIS-GS-----CHVQVVDSY--GRSVYDGE-----VRRGQIMVVPQ-NFAVV 398 (436)
Q Consensus 338 ~v~L~~gam~~PHwh~---~A~e--i~yV~~-G~-----grv~vv~~~--G~~~~~~~-----l~~Gdv~vVP~-g~~h~ 398 (436)
.....+|+-..||+.. .... ++|.+. -. |...+..+. ........ .++|+++++|. ...|.
T Consensus 3 ~~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~ 82 (100)
T PF13640_consen 3 LNRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHG 82 (100)
T ss_dssp EEEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEE
T ss_pred EEEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeec
Confidence 3455899999999976 2222 333344 33 666666531 11112222 78999999999 88887
Q ss_pred E
Q 046186 399 K 399 (436)
Q Consensus 399 ~ 399 (436)
.
T Consensus 83 v 83 (100)
T PF13640_consen 83 V 83 (100)
T ss_dssp E
T ss_pred C
Confidence 6
No 194
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=39.17 E-value=38 Score=24.49 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=27.3
Q ss_pred CceecccccCCCc--EEEEEEeeeEEEEEEeCC
Q 046186 344 NAMMVPHWNLNAH--SIMYAISGSCHVQVVDSY 374 (436)
Q Consensus 344 gam~~PHwh~~A~--ei~yV~~G~grv~vv~~~ 374 (436)
||+|.-++.|... .+..+++..+++.|+|..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 6888888888776 999999999999999964
No 195
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=38.74 E-value=75 Score=24.53 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=40.8
Q ss_pred EecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186 340 LLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA 401 (436)
Q Consensus 340 ~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a 401 (436)
.|.||..+. |.+.+...+-|.+|.+-++.-.. .-|.-|++||.+.+|+|--.++-+
T Consensus 3 ~L~~g~~~~--lr~~~~~~l~v~~G~vWlT~~g~----~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 3 ELAPGETLS--LRAAAGQRLRVESGRVWLTREGD----PDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EeCCCceEE--eEcCCCcEEEEccccEEEECCCC----CCCEEECCCCEEEeCCCCEEEEEe
Confidence 345565554 44556667999999999987432 246669999999999998776655
No 196
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=38.36 E-value=26 Score=31.49 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=24.0
Q ss_pred cccCCHHHHhhhcCCCHHHHHHHhhcC
Q 046186 216 FCGFDTRILAEAFNVDERLVRRLRSEK 242 (436)
Q Consensus 216 ~~gf~~~vLa~af~v~~~~v~~l~~~~ 242 (436)
-...+++-||++|+++.+.+.+|+..+
T Consensus 87 ~~~~~~~eLA~Sf~is~el~~qL~~~~ 113 (137)
T PRK14585 87 AYQYTPQEYAESLAIPDELYQQLQKSH 113 (137)
T ss_pred CCCCChHHHHHHcCCCHHHHHHHhcCC
Confidence 357899999999999999999999765
No 197
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=38.23 E-value=1.4e+02 Score=29.59 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=40.7
Q ss_pred cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186 65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG 144 (436)
Q Consensus 65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G 144 (436)
.-+.+..++|++|.-..--.-.-+-.+.++.| ++++.+ .| .+.++- +. ...++. ...
T Consensus 25 ~~~~~~~l~L~~g~~~~~~~~~~E~~vv~l~G----~~~v~~--~g-~~~~~l----------~~-----R~~vF~-~~~ 81 (261)
T PF04962_consen 25 MYMGFGVLRLEAGESLEFELERRELGVVNLGG----KATVTV--DG-EEFYEL----------GG-----RESVFD-GPP 81 (261)
T ss_dssp CCBECCCEEEECCHCCCCCCCSEEEEEEEESS----SEEEEE--TT-EEEEEE-----------T-----TSSGGG-S--
T ss_pred cccceEEEEecCCCEEeccCCCcEEEEEEeCC----EEEEEe--CC-ceEEEe----------cc-----cccccC-CCC
Confidence 34566678999988654443335556667788 888875 11 000000 00 011333 566
Q ss_pred cEEEeCCCCeEEEeccCC
Q 046186 145 DIFALPAGVAHWCYNEGS 162 (436)
Q Consensus 145 Dv~~iPaG~~h~~~N~g~ 162 (436)
|.++||.|...-+.+.++
T Consensus 82 d~lYvp~g~~~~i~a~~~ 99 (261)
T PF04962_consen 82 DALYVPRGTKVVIFASTD 99 (261)
T ss_dssp EEEEE-TT--EEEEESST
T ss_pred cEEEeCCCCeEEEEEcCC
Confidence 999999999988888544
No 198
>PF13994 PgaD: PgaD-like protein
Probab=37.80 E-value=29 Score=30.90 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCHHHHhhhcCCCHHHHHHHhhcCC
Q 046186 219 FDTRILAEAFNVDERLVRRLRSEKD 243 (436)
Q Consensus 219 f~~~vLa~af~v~~~~v~~l~~~~~ 243 (436)
.+++=+|+.|+++++.+++++..+-
T Consensus 101 ~~~~elA~~f~l~~~~l~~lr~~k~ 125 (138)
T PF13994_consen 101 VSDEELARSFGLSPEQLQQLRQAKV 125 (138)
T ss_pred CCHHHHHHHcCCCHHHHHHHHhCCe
Confidence 8999999999999999999997763
No 199
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=34.98 E-value=1.9e+02 Score=27.91 Aligned_cols=71 Identities=13% Similarity=-0.002 Sum_probs=49.0
Q ss_pred ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186 66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD 145 (436)
Q Consensus 66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD 145 (436)
...|+++-+.||-.++-|.|-+-|.+-|++| ++.++ .-++..||
T Consensus 127 s~~V~llki~~g~s~P~HtH~G~E~t~vl~G--------~~sde----------------------------~G~y~vgD 170 (216)
T COG3806 127 SRRVALLKIEPGRSFPDHTHVGIERTAVLEG--------AFSDE----------------------------NGEYLVGD 170 (216)
T ss_pred CceeEEEEeccCcccccccccceEEEEEEee--------ccccC----------------------------CCccccCc
Confidence 4688999999999999999999999999999 22222 12566677
Q ss_pred EEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186 146 IFALPAGVAHWCYNEGSTPVVAVVLLD 172 (436)
Q Consensus 146 v~~iPaG~~h~~~N~g~e~l~~v~~~d 172 (436)
..--+-++-|.-.-..+.++..++.+|
T Consensus 171 ~~~~d~~v~H~piv~~~~eClcl~al~ 197 (216)
T COG3806 171 FTLADGTVQHSPIVLPPGECLCLAALD 197 (216)
T ss_pred eeecCCccccccccCCCCCceEEEEcC
Confidence 776666666653333344555555444
No 200
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=34.15 E-value=30 Score=26.64 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=33.1
Q ss_pred ccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccC
Q 046186 217 CGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVAR 259 (436)
Q Consensus 217 ~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~ 259 (436)
-.++.+.||..+|++++++.++.+.-...|.|-.-.+.+.++.
T Consensus 27 ~~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~~~~i~I~d 69 (76)
T PF13545_consen 27 LPLTQEEIADMLGVSRETVSRILKRLKDEGIIEVKRGKIIILD 69 (76)
T ss_dssp EESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESS
T ss_pred ecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcCCEEEECC
Confidence 4799999999999999999988776666676654445565543
No 201
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.30 E-value=80 Score=26.21 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=35.0
Q ss_pred ccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE
Q 046186 351 WNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK 399 (436)
Q Consensus 351 wh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~ 399 (436)
+-.-+.|+.-|+.|...+-+.+++ .-.+..+|++|.||.+--+-+
T Consensus 37 FgTa~~E~Mtvv~Gal~v~lpgs~----dWq~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 37 FGTAAPEEMTVVSGALTVLLPGSD----DWQVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred eccCCceEEEEEeeEEEEEcCCCc----ccEEecCCceEEcCCCCeEEE
Confidence 344577999999999999887765 344577999999999866443
No 202
>PRK04043 tolB translocation protein TolB; Provisional
Probab=32.52 E-value=2.5e+02 Score=29.57 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=34.4
Q ss_pred ecCCcee-cccccCCCcEEEEEEe--eeEEEEEEeCCCCeEEEEEecCccE
Q 046186 341 LHRNAMM-VPHWNLNAHSIMYAIS--GSCHVQVVDSYGRSVYDGEVRRGQI 388 (436)
Q Consensus 341 L~~gam~-~PHwh~~A~ei~yV~~--G~grv~vv~~~G~~~~~~~l~~Gdv 388 (436)
|+.++.- .|.|.|+...|+|... |...+.+++-+|+..+.-....|++
T Consensus 364 LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~ 414 (419)
T PRK04043 364 LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKI 414 (419)
T ss_pred CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCcc
Confidence 4444333 4999999998888874 6777889999997655544566764
No 203
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=31.45 E-value=2.1e+02 Score=23.86 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=34.1
Q ss_pred cCCceecccccCCCcEEE-EEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEE
Q 046186 342 HRNAMMVPHWNLNAHSIM-YAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFE 407 (436)
Q Consensus 342 ~~gam~~PHwh~~A~ei~-yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~ 407 (436)
+.||+.-|--........ .+-=|.|+.. .+|+. ....++.||.+++|.+...-+..+++...
T Consensus 21 T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~---~~G~~-~~~~vk~GD~Vlf~~~~g~ev~~~~~~y~ 83 (95)
T PRK00364 21 TAGGIVLPDSAKEKPQEGEVVAVGPGRRL---DNGER-VPLDVKVGDKVLFGKYAGTEVKIDGEEYL 83 (95)
T ss_pred ccceEEcCccccCCcceEEEEEECCCeEC---CCCCE-eecccCCCCEEEEcCCCCeEEEECCEEEE
Confidence 345555554322222233 2334555432 34544 34469999999999987665555544433
No 204
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=30.44 E-value=41 Score=37.23 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=30.8
Q ss_pred cEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEE
Q 046186 356 HSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVV 391 (436)
Q Consensus 356 ~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vV 391 (436)
|-=.|-+.+.|.|+||+.+|+.++...|.+||+|=.
T Consensus 423 HdkTFei~~~G~v~Vvd~~G~vl~eh~Ve~GDIwRm 458 (741)
T TIGR00178 423 HDKTFQIPADGVVRVVDSSGEVLLEQSVEAGDIWRM 458 (741)
T ss_pred CCcceecCCCceEEEEeCCCCEEEEeeccCCcchhh
Confidence 334567789999999999999999999999999854
No 205
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=29.88 E-value=27 Score=23.58 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=21.2
Q ss_pred CCHHHHhhhcCCCHHHHHHHhhcCCCceeE
Q 046186 219 FDTRILAEAFNVDERLVRRLRSEKDYRGAI 248 (436)
Q Consensus 219 f~~~vLa~af~v~~~~v~~l~~~~~~rG~I 248 (436)
++.+=||..+|+.+++|.++.+.-..+|.|
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 456678999999999999987665555554
No 206
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=29.78 E-value=53 Score=22.85 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=28.4
Q ss_pred cCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCc
Q 046186 218 GFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQ 254 (436)
Q Consensus 218 gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~ 254 (436)
+++..-|++.|+++..++.+....-...|.|.+..++
T Consensus 14 ~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~~~~~ 50 (53)
T smart00420 14 KVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGG 50 (53)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 5788999999999999987776544445788776544
No 207
>PLN02868 acyl-CoA thioesterase family protein
Probab=29.53 E-value=98 Score=32.43 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=30.7
Q ss_pred CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEc
Q 046186 355 AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVP 392 (436)
Q Consensus 355 A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP 392 (436)
++.+.+|++|.+++...+.+|.. .-..+.+||+|=..
T Consensus 49 ~~~lyiI~~G~V~v~~~~~~ge~-~l~~l~~Gd~fG~~ 85 (413)
T PLN02868 49 GDGLYFIWKGEAEVSGPAEEESR-PEFLLKRYDYFGYG 85 (413)
T ss_pred CceEEEEEeCEEEEEEECCCCcE-EEEEeCCCCEeehh
Confidence 66899999999999999988854 45578999998754
No 208
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=29.48 E-value=57 Score=23.12 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=19.6
Q ss_pred ccCCHHHHhhhcCCCHHHHHHHhhc
Q 046186 217 CGFDTRILAEAFNVDERLVRRLRSE 241 (436)
Q Consensus 217 ~gf~~~vLa~af~v~~~~v~~l~~~ 241 (436)
.|++..-+|+.|||+..++-++...
T Consensus 20 ~G~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 20 EGMSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp TT--HHHHHHHTTS-HHHHHHHHCC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 5899999999999999999988754
No 209
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=28.58 E-value=1.9e+02 Score=29.10 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=45.2
Q ss_pred cceEEEEEecCCc---eecccccCCCcEEEEEEeeeEEEEEEeCCCCe--EEEEEecCccEEEEcCCCEEEEEeCCCcEE
Q 046186 333 QLSAERGLLHRNA---MMVPHWNLNAHSIMYAISGSCHVQVVDSYGRS--VYDGEVRRGQIMVVPQNFAVVKRAGGAEFE 407 (436)
Q Consensus 333 ~ls~~~v~L~~ga---m~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~--~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~ 407 (436)
.|-+....|+||+ -++||-|.+-.|..|.-+=.-.-.|+.-.|.- +---.|+-+|++++|.=-.|+- +|..+-.
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g-~gt~~y~ 252 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSG-VGTSNYT 252 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecC-cCccccE
Confidence 5677777889998 68999999777755533211111122222321 1113388999999999877774 3433333
Q ss_pred E
Q 046186 408 W 408 (436)
Q Consensus 408 ~ 408 (436)
|
T Consensus 253 f 253 (276)
T PRK00924 253 F 253 (276)
T ss_pred E
Confidence 3
No 210
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=28.21 E-value=1.6e+02 Score=22.98 Aligned_cols=35 Identities=9% Similarity=0.020 Sum_probs=23.5
Q ss_pred EEEEEecCCceecCeeecCCceEEEEecccceEEEEEee
Q 046186 69 VVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDP 107 (436)
Q Consensus 69 ~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v 107 (436)
+...++.+|..+...=-+.+.+.+|++| ...+...
T Consensus 17 ~~~~~~~~g~~l~~~~~~~~~~~~i~~G----~v~~~~~ 51 (115)
T cd00038 17 LEERRFPAGEVIIRQGDPADSLYIVLSG----SVEVYKL 51 (115)
T ss_pred ceeeeeCCCCEEEcCCCCCCeEEEEEeC----EEEEEEE
Confidence 3445677777654433447889999999 7777654
No 211
>PHA02951 Hypothetical protein; Provisional
Probab=27.58 E-value=1.4e+02 Score=30.53 Aligned_cols=44 Identities=11% Similarity=0.029 Sum_probs=36.4
Q ss_pred CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE
Q 046186 355 AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK 399 (436)
Q Consensus 355 A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~ 399 (436)
+--.+.|++-+|+..+.=|+ ..++...+.+||++|+|.......
T Consensus 124 gFvAtICIKNeGiSgl~Vp~-t~~LK~ni~~GD~IVsRs~rGv~f 167 (337)
T PHA02951 124 GFTATICLKNEGISGLYIPG-TSVLKINICQGDTIVSRSSRGVQF 167 (337)
T ss_pred ceEEEEEEcCCCeeEEEeCC-CchheeeeccCcEEEEecccccee
Confidence 56788999999999998876 444667789999999999988654
No 212
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=27.33 E-value=58 Score=23.32 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=25.5
Q ss_pred CHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEc
Q 046186 220 DTRILAEAFNVDERLVRRLRSEKDYRGAIVTVR 252 (436)
Q Consensus 220 ~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~ 252 (436)
+..-||+.|+++..++++....-...|.|.+..
T Consensus 22 s~~~la~~~~vs~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 22 SERELAAQLGVSRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 678899999999999988765544467776654
No 213
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=26.71 E-value=32 Score=26.63 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.4
Q ss_pred cCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEc
Q 046186 218 GFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVR 252 (436)
Q Consensus 218 gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~ 252 (436)
..+..-||.-|++++++++.+...-..+|+|.++.
T Consensus 14 ~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 14 RVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 36778899999999999999998877789998875
No 214
>PHA02984 hypothetical protein; Provisional
Probab=26.06 E-value=3.4e+02 Score=27.34 Aligned_cols=51 Identities=8% Similarity=0.229 Sum_probs=40.3
Q ss_pred EEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEE
Q 046186 357 SIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWI 409 (436)
Q Consensus 357 ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l 409 (436)
-.+.|+.|+.+|.+.. +.+..+..+.+||-|++=-+.-|.+.+...++.++
T Consensus 95 ~FvlCl~G~~~I~~~~--~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~ 145 (286)
T PHA02984 95 MFVLCLNGKTSIECFN--KGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLA 145 (286)
T ss_pred EEEEEcCCeEEEEEec--CCceeeeEEecCceEEEEccceEEEEeCCCceEEE
Confidence 4667788999888776 45557778999999999999999997776555543
No 215
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=25.97 E-value=39 Score=29.84 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=30.1
Q ss_pred CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCC
Q 046186 355 AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQN 394 (436)
Q Consensus 355 A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g 394 (436)
|.--.||+.|+.--.+++-||...-- +++||+++|=.+
T Consensus 52 aRf~TYvI~g~rGSg~I~lNGAAArl--~~~GD~VII~sy 89 (126)
T COG0853 52 ARFSTYVIAGERGSGVICLNGAAARL--VQVGDLVIIMSY 89 (126)
T ss_pred cEEEEEEEEccCCCcEEEechHHHhh--CCCCCEEEEEEc
Confidence 34578999999999999999975322 789999988544
No 216
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=25.73 E-value=64 Score=22.85 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=19.6
Q ss_pred ccCCHHHHhhhcCCCHHHHHHHhhcCCCce
Q 046186 217 CGFDTRILAEAFNVDERLVRRLRSEKDYRG 246 (436)
Q Consensus 217 ~gf~~~vLa~af~v~~~~v~~l~~~~~~rG 246 (436)
.|.+..-+|+.||++..+|.+....-.+.|
T Consensus 16 ~G~s~~~ia~~lgvs~~Tv~~w~kr~~~~G 45 (50)
T PF13384_consen 16 EGWSIREIAKRLGVSRSTVYRWIKRYREEG 45 (50)
T ss_dssp HT--HHHHHHHHTS-HHHHHHHHT------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHccccc
Confidence 489999999999999999999987654444
No 217
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=25.63 E-value=1.6e+02 Score=28.63 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=23.7
Q ss_pred EecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186 382 EVRRGQIMVVPQNFAVVKRAGGAEFEWISFK 412 (436)
Q Consensus 382 ~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~ 412 (436)
...+|+++++|....|....-..+..|++++
T Consensus 144 kp~aG~~vlfps~~lH~v~pVt~G~R~~~~~ 174 (226)
T PRK05467 144 KLPAGDLVLYPSTSLHRVTPVTRGVRVASFF 174 (226)
T ss_pred ecCCCeEEEECCCCceeeeeccCccEEEEEe
Confidence 4889999999999999875545555665543
No 218
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=25.05 E-value=65 Score=31.00 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=20.5
Q ss_pred EEEEEEeeeEEEEEEeCCC-CeEEEEEecCccEEEEcC
Q 046186 357 SIMYAISGSCHVQVVDSYG-RSVYDGEVRRGQIMVVPQ 393 (436)
Q Consensus 357 ei~yV~~G~grv~vv~~~G-~~~~~~~l~~Gdv~vVP~ 393 (436)
..+||++-.|.+..+...- ++ -...+.|||++|||-
T Consensus 167 s~v~VI~pdG~v~~~~~a~Wn~-~~~~l~PG~~I~Vp~ 203 (229)
T PF06251_consen 167 SRVYVIQPDGSVQKVPVAYWNN-QHQELAPGATIYVPF 203 (229)
T ss_dssp SEEEEE-TTS-EEEEE-STTT---EEE--TT-EEEE-B
T ss_pred ccEEEEeCCCcEEEcceehhcc-CCCCCCCCCEEEEcC
Confidence 4799999999998776421 11 234699999999996
No 219
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=24.32 E-value=2.9e+02 Score=21.48 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=33.8
Q ss_pred EEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeC
Q 046186 71 RHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALP 150 (436)
Q Consensus 71 r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iP 150 (436)
..++.+|-.+.-.=-+...+.+|++| ...+-....+. ....+..+.+||++-..
T Consensus 19 ~~~~~~g~~l~~~g~~~~~~y~v~~G----~v~~~~~~~~g----------------------~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 19 PVRYPAGEVIIRQGDVGDSFYIILSG----EVRVYKVLEDG----------------------REQILGILGPGDFFGEL 72 (120)
T ss_pred EEEeCCCCEEEeCCCcCCcEEEEEee----EEEEEEECCCC----------------------ceEEEEeecCCceechh
Confidence 45677777653333347889999999 77665432210 01235788899988554
Q ss_pred C
Q 046186 151 A 151 (436)
Q Consensus 151 a 151 (436)
.
T Consensus 73 ~ 73 (120)
T smart00100 73 A 73 (120)
T ss_pred h
Confidence 3
No 220
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.05 E-value=2.5e+02 Score=23.38 Aligned_cols=41 Identities=15% Similarity=0.370 Sum_probs=30.1
Q ss_pred CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEE
Q 046186 87 SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWC 157 (436)
Q Consensus 87 a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~ 157 (436)
++|+.-|+.| ...+ ..||.++ .....+|.+|.||+..-+-+
T Consensus 41 ~~E~Mtvv~G----al~v--~lpgs~d------------------------Wq~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 41 APEEMTVVSG----ALTV--LLPGSDD------------------------WQVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred CceEEEEEee----EEEE--EcCCCcc------------------------cEEecCCceEEcCCCCeEEE
Confidence 8899999999 5544 4565332 46889999999998766543
No 221
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=23.79 E-value=83 Score=32.36 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=42.2
Q ss_pred CeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCC--------------CeEEE
Q 046186 315 AGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYG--------------RSVYD 380 (436)
Q Consensus 315 ~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G--------------~~~~~ 380 (436)
-|.-..+|+.--.+-++|=-+-.+=.|.|-+...+-.|+.++| .|...++++...- -+-+.
T Consensus 190 SGtsiHIDPlgTSAWNtll~GhKrW~LfPp~~p~~lvkv~~~e-----~g~~~de~itwf~~~y~rt~~Pswp~E~kPIE 264 (407)
T KOG2130|consen 190 SGTSIHIDPLGTSAWNTLLQGHKRWVLFPPGTPPELVKVTVDE-----GGKQPDEIITWFSTIYPRTQLPSWPDEYKPIE 264 (407)
T ss_pred CCceeEECCcchHHHHHHhhccceeEEcCCCCCCCceeecccc-----cCCCCcceechhhhccccccCCCCccccCCce
Confidence 3444445544433333332233344444444444444444443 2344555444421 11244
Q ss_pred EEecCccEEEEcCCCEEEE
Q 046186 381 GEVRRGQIMVVPQNFAVVK 399 (436)
Q Consensus 381 ~~l~~Gdv~vVP~g~~h~~ 399 (436)
-...+|++++||-||.|++
T Consensus 265 c~q~pGEt~fVP~GWWHvV 283 (407)
T KOG2130|consen 265 CLQKPGETMFVPSGWWHVV 283 (407)
T ss_pred eeecCCceEEecCCeEEEE
Confidence 4578999999999999986
No 222
>PF06413 Neugrin: Neugrin; InterPro: IPR010487 This family contains mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation []. Homologues of neugrin are found in fungi suggesting they have a alternative role or more than one function.
Probab=22.34 E-value=75 Score=30.97 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=21.9
Q ss_pred cCCHHHHhhhcCCCHHHHHHHhhcC
Q 046186 218 GFDTRILAEAFNVDERLVRRLRSEK 242 (436)
Q Consensus 218 gf~~~vLa~af~v~~~~v~~l~~~~ 242 (436)
-++.+.||+.|.|+++.|+||....
T Consensus 29 ~~t~~~Lae~F~vspe~irrILksk 53 (225)
T PF06413_consen 29 EWTVERLAESFKVSPEAIRRILKSK 53 (225)
T ss_pred ccCHHHHHhhCCCCHHHHHHHHhcC
Confidence 3678899999999999999998665
No 223
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=22.23 E-value=46 Score=21.29 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=12.8
Q ss_pred cchhhHHHHHHHhcccc
Q 046186 2 ANTCSLLNLVILFRGCL 18 (436)
Q Consensus 2 ~~~~~~l~~~~l~~~~~ 18 (436)
+.+.+.++.+++..||.
T Consensus 8 Kkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 8 KKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 66677777777778886
No 224
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=21.80 E-value=3.4e+02 Score=27.35 Aligned_cols=82 Identities=7% Similarity=0.043 Sum_probs=48.0
Q ss_pred cccceEEEEEEecCCc---eecCeeec-CCceEE-EEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccce
Q 046186 63 QCAGVAVVRHTIRQKG---LLLPQFSN-SPQLVY-ILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQK 137 (436)
Q Consensus 63 ~~~gv~~~r~~i~pg~---l~~Ph~h~-a~ei~y-V~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k 137 (436)
....+-+....+.||+ -.+||.|+ ..|.+| ---. ..-..+-+-|-| |+ -+
T Consensus 171 ~s~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~----~~qrV~h~mG~p--------------------dE-Tr 225 (276)
T PRK00924 171 ETCQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMP----EDARVFHFMGEP--------------------QE-TR 225 (276)
T ss_pred ccccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcC----CCceEEecCCCc--------------------cc-ee
Confidence 3345777778889999 48999999 566544 2221 111111111111 11 11
Q ss_pred eeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEE
Q 046186 138 IRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLL 171 (436)
Q Consensus 138 ~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~ 171 (436)
-..++-+|++.+|+=..|.-. |...-.+|+..
T Consensus 226 h~~v~n~~aVisP~wsih~g~--gt~~y~fiw~m 257 (276)
T PRK00924 226 HIVVHNEQAVISPSWSIHSGV--GTSNYTFIWGM 257 (276)
T ss_pred eEEEECCCEEECCCcceecCc--CccccEEEEEe
Confidence 267899999999998888643 44455555543
No 225
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=21.61 E-value=2.7e+02 Score=28.65 Aligned_cols=60 Identities=13% Similarity=0.359 Sum_probs=46.6
Q ss_pred cEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCC
Q 046186 356 HSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNA 417 (436)
Q Consensus 356 ~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p 417 (436)
.++..-..|...++|.|.+|+.++...+++|+.+-+--.-++.++.|.-... .+.-+.++
T Consensus 252 ~~L~i~f~~d~Wv~V~da~Gk~l~~g~~~~G~~~~~~g~~p~~v~iG~~~~v--~i~~nG~~ 311 (331)
T PRK10856 252 NALVMNFTADCWLEVTDATGKKLFSGMQRKGGNLNLTGQAPYKLKIGAPAAV--QIQYQGKP 311 (331)
T ss_pred ceEEEEEcCCeEEEEEeCCCcChhhhccCCCceEEecCCceEEEEEcCCCce--EEEECCEE
Confidence 4688888999999999999999999999999999997656777788864333 33335554
No 226
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=21.10 E-value=60 Score=28.21 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=28.2
Q ss_pred EEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCC
Q 046186 357 SIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQN 394 (436)
Q Consensus 357 ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g 394 (436)
--.|++.|+.--.+++-||...- ..++||.++|=.+
T Consensus 54 f~TYvI~g~~gSg~I~lNGAAAr--~~~~GD~vII~sy 89 (111)
T cd06919 54 FETYVIPGERGSGVICLNGAAAR--LGQPGDRVIIMAY 89 (111)
T ss_pred EEEEEEEcCCCCCEEEeCCHHHh--cCCCCCEEEEEEC
Confidence 46899999988888888986532 2789999988543
No 227
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=20.60 E-value=4.4e+02 Score=20.93 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=35.6
Q ss_pred CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcC--CCEEEEEeCCCcEEEEEEEecCC
Q 046186 355 AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQ--NFAVVKRAGGAEFEWISFKTNDN 416 (436)
Q Consensus 355 A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~--g~~h~~~ag~e~~~~l~f~~s~~ 416 (436)
+.=.++.+.-.|.++.+-|+--. -+..+.+|..+.||. .-..+......+-+.+-...+..
T Consensus 19 ~Yl~l~~~~~~G~v~~L~Pn~~~-~~~~v~ag~~~~iP~~~~~~~~~v~~P~G~e~i~~ias~~ 81 (83)
T PF14326_consen 19 GYLYLFYIDADGKVTLLFPNRYQ-PDNFVKAGQTYTIPDPGDRFSFTVDPPFGKERIVAIASTE 81 (83)
T ss_pred eEEEEEEECCCCCEEEEecCccc-cCceEcCCceEEcCCCCCceEEEEcCCCCcEEEEEEEECC
Confidence 33445555667777777776322 235689999999992 22223344445555555444443
No 228
>PRK11396 hypothetical protein; Provisional
Probab=20.57 E-value=6.8e+02 Score=23.80 Aligned_cols=89 Identities=11% Similarity=-0.040 Sum_probs=54.9
Q ss_pred CCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCC
Q 046186 41 PNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQ 119 (436)
Q Consensus 41 P~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~ 119 (436)
|....++-+|.|+..-...+....-..++...+|...|-+ +..+ -..++.|++| .|..=.+ .+
T Consensus 10 p~~~WkNGgG~TrEI~~~P~~~~dF~WRiSiA~I~~~GpF--S~FpGidR~i~lL~G----~g~~L~~-~~--------- 73 (191)
T PRK11396 10 SVNLWRNAAGETREICTFPPAKRDFYWRASIASIAANGEF--SLFPGMERIVTLLEG----GEMFLES-AD--------- 73 (191)
T ss_pred CcccccCCCeEEEEEEEcCCCCCCceEEEEEEEecCCCCC--CCCCCccEEEEEEEC----CCEEEee-CC---------
Confidence 3344778899885432111111233455666677665542 2345 8899999999 6554321 11
Q ss_pred CCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccC
Q 046186 120 QGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEG 161 (436)
Q Consensus 120 ~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g 161 (436)
...+.|+++|.+.|+.+.+-.+...+
T Consensus 74 ----------------~~~~~l~~~~p~~F~Gd~~v~a~L~~ 99 (191)
T PRK11396 74 ----------------RFNHTLKPLQPFAFAADQVVKAKLTA 99 (191)
T ss_pred ----------------ccceecCCCCCeEeCCCCeeEEEECC
Confidence 22457789999999999998877653
No 229
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=20.47 E-value=6.2e+02 Score=22.63 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=59.0
Q ss_pred CCcEE-EEeCCCCcc----c--cccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCC
Q 046186 48 EAGVV-ETWDPGHEQ----F--QCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQ 120 (436)
Q Consensus 48 e~G~~-e~~~~~~p~----l--~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~ 120 (436)
|||.+ |+|...... . ...-++....-|.++.....|-.+++|+-|-..|. ...+-++.|++.-
T Consensus 15 EGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hrv~sdEiw~~~~G~---pl~l~~i~~dg~~------- 84 (139)
T PF06172_consen 15 EGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHRVDSDEIWHFHAGD---PLELHLIDPDGSY------- 84 (139)
T ss_dssp TSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEEESSEEEEEEEEES----EEEEEECTTSTE-------
T ss_pred CCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEEcCCCEEEEEEcCC---CEEEEEEcCCCCe-------
Confidence 89987 455432111 0 12346677777999999988888999999999993 5777788774210
Q ss_pred CCCCccCCccccccccee-eeeccC--cEEEeCCCCeEEEeccCCCcEEEEE
Q 046186 121 GGFGESAGRSQQDSHQKI-RRFRQG--DIFALPAGVAHWCYNEGSTPVVAVV 169 (436)
Q Consensus 121 ~~~~~~~~~~~~d~~~k~-~~l~~G--Dv~~iPaG~~h~~~N~g~e~l~~v~ 169 (436)
+ ..+. .++.+| =.++||+|+-+-..-.+...-.+|+
T Consensus 85 --------~-----~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~y~Lvs 123 (139)
T PF06172_consen 85 --------E-----TVVLGPDLAAGERPQVVVPAGTWQAAELEPEGDYSLVS 123 (139)
T ss_dssp --------E-----EEEESSTTCTTEBSEEEE-TTSEEEEEECESSSEEEEE
T ss_pred --------E-----EEEECCCCCCCceEEEEECCCEEEEccccCCCCEEEEE
Confidence 0 0001 233445 3689999987666434444555554
No 230
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.38 E-value=46 Score=32.25 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=33.4
Q ss_pred cceEEEEEecCCceecccccCCCcEEEEEEe--eeEEEEEEeCCCCeEEEEEecCccEEEEcCCC
Q 046186 333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAIS--GSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF 395 (436)
Q Consensus 333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~--G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~ 395 (436)
+|++..+-...||+.. .-+... +++++ ..+.++....+ ....|++||++|||..|
T Consensus 182 ~~tl~~al~~aGG~~~---~a~~~~-v~i~R~~~~g~~~~~~~~----~~~~l~~gDii~V~~s~ 238 (239)
T TIGR03028 182 NMTVMQALAQGGGLTP---RGTERG-IRVMRRDDKGAVEEVSGE----LGDLVQPDDVIYVRESL 238 (239)
T ss_pred CCCHHHHHHhcCCCCc---ccCcce-EEEEEECCCCcEEEEecC----CCcccCCCCEEEEeCcc
Confidence 5666666777888876 112222 34433 24555555433 22359999999999865
No 231
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=20.30 E-value=5.3e+02 Score=23.60 Aligned_cols=67 Identities=9% Similarity=-0.048 Sum_probs=43.3
Q ss_pred cccccCCCcEEEEEEeeeE-EEEEEeCCCC-----eEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEec
Q 046186 348 VPHWNLNAHSIMYAISGSC-HVQVVDSYGR-----SVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTN 414 (436)
Q Consensus 348 ~PHwh~~A~ei~yV~~G~g-rv~vv~~~G~-----~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s 414 (436)
..=.||.+++...-+.|+. .+-||.+.+. ++-.+.+..|+-+.+=+|-+|.- .+-++...|+.+...
T Consensus 73 ~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~~~ 146 (165)
T PF04115_consen 73 MLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVDRI 146 (165)
T ss_dssp EEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEEEE
T ss_pred eeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEeCC
Confidence 3346788999999999998 8888888763 34445588999999999988875 666677777777544
No 232
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=20.30 E-value=1.2e+02 Score=20.72 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=27.5
Q ss_pred cCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEc
Q 046186 218 GFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVR 252 (436)
Q Consensus 218 gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~ 252 (436)
..+..-||+.++++..++.++...-...|.|.+..
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~~~ 42 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLISREG 42 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 47778899999999999988876666567776544
No 233
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=20.01 E-value=3.8e+02 Score=23.99 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=45.3
Q ss_pred CccccccceEEEEEecCCceecccccCCCcEEEEEE----eeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEE
Q 046186 327 PVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAI----SGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAV 397 (436)
Q Consensus 327 P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~----~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h 397 (436)
|.|+ ++.+.++.|+.|....-- +.+++.-+. .|+..++|-+..|.. +++||++=.-.||..
T Consensus 12 P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~~~-----~~PGDIirLt~Gy~S 76 (134)
T KOG3416|consen 12 PGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEGCL-----IQPGDIIRLTGGYAS 76 (134)
T ss_pred hhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcCcc-----cCCccEEEecccchh
Confidence 7788 888999999998765432 345766654 466777777755554 899999999999874
Done!