Your job contains 1 sequence.
>046187
MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP
SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS
TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA
ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT
LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL
TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDKD
KQPETKSIKVNEVIETESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNIRTTGEKNQI
VVQGDINEVQPGHQDLDQKLDEDTKPATTTLRPSQFPCTPVSTVTSLTWPFRPPPSMATA
SFQVVDPPKLQPGHIELKGSGVQAGSKNDK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046187
(510 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2115255 - symbol:PBRP "plant-specific TFIIB-re... 1650 1.0e-169 1
DICTYBASE|DDB_G0290929 - symbol:gtf2b "transcription init... 285 2.5e-26 2
UNIPROTKB|F1NXP2 - symbol:GTF2B "Uncharacterized protein"... 296 9.3e-26 1
MGI|MGI:2385191 - symbol:Gtf2b "general transcription fac... 293 2.0e-25 1
RGD|619735 - symbol:Gtf2b "general transcription factor I... 293 2.0e-25 1
UNIPROTKB|F2Z4J6 - symbol:LOC786656 "Uncharacterized prot... 290 4.4e-25 1
UNIPROTKB|E2RPG1 - symbol:GTF2B "Uncharacterized protein"... 290 4.4e-25 1
UNIPROTKB|Q00403 - symbol:GTF2B "Transcription initiation... 290 4.4e-25 1
UNIPROTKB|F2Z5J6 - symbol:GTF2B "Uncharacterized protein"... 290 4.4e-25 1
ZFIN|ZDB-GENE-030131-3544 - symbol:gtf2b "general transcr... 290 4.4e-25 1
UNIPROTKB|Q2KIN8 - symbol:GTF2B "Transcription initiation... 285 1.6e-24 1
FB|FBgn0004915 - symbol:TfIIB "Transcription factor IIB" ... 271 5.6e-23 1
WB|WBGene00006648 - symbol:ttb-1 species:6239 "Caenorhabd... 269 9.3e-23 1
TAIR|locus:2062703 - symbol:TFIIB "transcription factor I... 240 1.4e-19 1
TAIR|locus:2076259 - symbol:AT3G10330 species:3702 "Arabi... 230 1.8e-18 1
POMBASE|SPAC16E8.16 - symbol:SPAC16E8.16 "transcription f... 209 1.5e-15 2
ASPGD|ASPL0000072123 - symbol:AN4928 species:162425 "Emer... 110 9.4e-12 3
UNIPROTKB|B1APE2 - symbol:GTF2B "Transcription initiation... 168 2.8e-11 1
CGD|CAL0005818 - symbol:SUA72 species:5476 "Candida albic... 172 2.4e-10 2
UNIPROTKB|Q59K82 - symbol:SUA72 "Likely transcription fac... 172 2.4e-10 2
CGD|CAL0001439 - symbol:SUA71 species:5476 "Candida albic... 156 3.3e-09 2
SGD|S000006290 - symbol:SUA7 "Transcription factor TFIIB"... 149 1.5e-07 1
UNIPROTKB|F1PRK4 - symbol:BRF1 "Uncharacterized protein" ... 150 3.4e-07 1
TAIR|locus:2082583 - symbol:AT3G57370 species:3702 "Arabi... 146 3.7e-07 1
TAIR|locus:2093852 - symbol:pBRP2 "plant-specific TFIIB-r... 144 5.2e-07 1
UNIPROTKB|F1NQ85 - symbol:BRF1 "Uncharacterized protein" ... 148 5.4e-07 1
MGI|MGI:1919558 - symbol:Brf1 "BRF1 homolog, subunit of R... 147 8.4e-07 1
TAIR|locus:2139227 - symbol:AT4G10680 species:3702 "Arabi... 128 1.6e-06 1
ZFIN|ZDB-GENE-030131-6248 - symbol:brf1b "BRF1 homolog, s... 150 2.0e-06 2
UNIPROTKB|Q92994 - symbol:BRF1 "Transcription factor IIIB... 143 2.3e-06 1
UNIPROTKB|B1APE1 - symbol:GTF2B "Transcription initiation... 129 7.5e-06 1
UNIPROTKB|G3X7R9 - symbol:G3X7R9 "Uncharacterized protein... 130 5.5e-05 1
UNIPROTKB|J9PB52 - symbol:BRF1 "Uncharacterized protein" ... 126 0.00013 1
ZFIN|ZDB-GENE-030131-6334 - symbol:brf1a "BRF1 homolog, s... 127 0.00053 2
FB|FBgn0038499 - symbol:Brf "Brf" species:7227 "Drosophil... 122 0.00056 2
>TAIR|locus:2115255 [details] [associations]
symbol:PBRP "plant-specific TFIIB-related protein"
species:3702 "Arabidopsis thaliana" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009527 "plastid outer membrane" evidence=IDA]
[GO:0000182 "rDNA binding" evidence=IDA] [GO:0010440 "stomatal
lineage progression" evidence=RCA] InterPro:IPR000812
InterPro:IPR013150 Pfam:PF00382 PRINTS:PR00685 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
GO:GO:0003743 EMBL:AL161589 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 EMBL:Z99708 PANTHER:PTHR11618
GO:GO:0000182 GO:GO:0009527 KO:K03124 HSSP:Q00403 EMBL:BT006470
EMBL:AY463603 EMBL:AJ295068 IPI:IPI00543098 PIR:G85432
RefSeq:NP_195383.1 UniGene:At.48945 ProteinModelPortal:O23215
SMR:O23215 STRING:O23215 PRIDE:O23215 EnsemblPlants:AT4G36650.1
GeneID:829817 KEGG:ath:AT4G36650 TAIR:At4g36650
HOGENOM:HOG000114088 InParanoid:O23215 OMA:RDCCSAT PhylomeDB:O23215
ProtClustDB:CLSN2685566 Genevestigator:O23215 Uniprot:O23215
Length = 503
Score = 1650 (585.9 bits), Expect = 1.0e-169, P = 1.0e-169
Identities = 348/511 (68%), Positives = 388/511 (75%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
MKCPYCS+AQGRC TTS+GRSITEC SCGRV+ ERQ QNHHLFH+RAQDTPLCLVTSDL
Sbjct: 1 MKCPYCSSAQGRCTTTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLXXX 120
+ QP D +EDPF+PTGFITAFS WSL PSP+F RSS SFSG LAELERT EL
Sbjct: 61 TAAQPSPED--EEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTLELASST 118
Query: 121 XXXXXXXVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
V++DNLRAY+QIIDVASILGLD DI +HAFQLFRDCCSATCLRNRSVEALATA
Sbjct: 119 SNSNSSTVVVDNLRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATA 178
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
LVQAIREAQEPRTLQEISIAANV QKEIGKYIKILGEALQLSQPINSNSI+VHMPRFCT
Sbjct: 179 CLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCT 238
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
LLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK+TGL
Sbjct: 239 LLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGL 298
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVK-VDSGEVTSVDK 359
TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTI++ R+ T + VD E + V+K
Sbjct: 299 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTISTTRSTTPRAVDPPEPSFVEK 358
Query: 360 DKQPETKSIKVNEVIETESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNIRTTGEKNQ 419
DK P K I E + P D K+P F QPWL F +++ E
Sbjct: 359 DK-PSAKPI---ETFDHTYQQPKGKED-------KQPK-FRQPWL-FGTASVMNPAE--M 403
Query: 420 IVVQGDINEVQPGHQDLD----QKL-DEDTKPATTTLRP-SQFPCTPV-ST-VTSLTWPF 471
I N + Q LD Q+L D++T P LR + FP P ST ++++ W F
Sbjct: 404 ISEPAKPNAMDYEKQQLDKQQQQQLGDKETLPIY--LRDHNPFPSNPSPSTGISTINWSF 461
Query: 472 RPPPSMATAS-FQVVDPPKLQPGHIELKGSG 501
RP ++S V+ PPKL PG+ E++GSG
Sbjct: 462 RPSVVPGSSSNLPVIHPPKLPPGYAEIRGSG 492
>DICTYBASE|DDB_G0290929 [details] [associations]
symbol:gtf2b "transcription initiation factor IIB"
species:44689 "Dictyostelium discoideum" [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0001139 "core RNA polymerase II recruiting
transcription factor activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
dictyBase:DDB_G0290929 GO:GO:0005654 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GenomeReviews:CM000154_GR Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AAFI02000172 GO:GO:0001139
KO:K03124 InterPro:IPR023486 RefSeq:XP_635486.1 HSSP:Q00403
ProteinModelPortal:Q54FD6 SMR:Q54FD6 STRING:Q54FD6
EnsemblProtists:DDB0216283 GeneID:8627902 KEGG:ddi:DDB_G0290929
OMA:VTIRNAY Uniprot:Q54FD6
Length = 325
Score = 285 (105.4 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 67/204 (32%), Positives = 111/204 (54%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I +A + L + D A +LFR + RSV+ + AAL A R+
Sbjct: 122 LAAFKEIGRMADHMNLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLS 181
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI+ NVP+KEI + KI+ E + + S RFC+ L+L + A
Sbjct: 182 RTFKEIAALTNVPKKEISRCYKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGA 241
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
H+ ++ ++ ++PIS++AA+IY+ QL +++TQ +I V+G++EVT+R YK+L
Sbjct: 242 EHVSKMAMDMGIVAGKSPISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDL 301
Query: 313 LENWDDLLPSNYTPAVPPEKAFPT 336
D L+PS+ +P + PT
Sbjct: 302 YAKRDQLIPSD-SPYFSQVQYLPT 324
Score = 37 (18.1 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 25 CGSCGRVIAERQCQNH 40
C CG V+ +R H
Sbjct: 44 CRGCGVVVGDRIVDEH 59
>UNIPROTKB|F1NXP2 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:AADN02012841 IPI:IPI00571339 Ensembl:ENSGALT00000010015
Uniprot:F1NXP2
Length = 306
Score = 296 (109.3 bits), Expect = 9.3e-26, P = 9.3e-26
Identities = 67/200 (33%), Positives = 113/200 (56%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I ++A + L +I D LF+ L+ RS +A+A+A L A R+ P
Sbjct: 105 MNAFKEITNMADRINLPRNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVP 164
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L K Q+ A
Sbjct: 165 RTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLGLPKQVQMAA 222
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q +++TQ EI + G+ +VT+R+ Y+ +
Sbjct: 223 THIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 282
Query: 313 LENWDDLLPSNYTPAVPPEK 332
DL P+++ P +K
Sbjct: 283 YPRAPDLFPADFKFDTPVDK 302
>MGI|MGI:2385191 [details] [associations]
symbol:Gtf2b "general transcription factor IIB"
species:10090 "Mus musculus" [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046966 "thyroid hormone
receptor binding" evidence=ISO] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 MGI:MGI:2385191 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
GO:GO:0001047 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F EMBL:BC016637
IPI:IPI00153874 RefSeq:NP_663521.1 UniGene:Mm.271756
ProteinModelPortal:P62915 SMR:P62915 STRING:P62915
PhosphoSite:P62915 PaxDb:P62915 PRIDE:P62915
Ensembl:ENSMUST00000029938 GeneID:229906 KEGG:mmu:229906
InParanoid:P62915 NextBio:379735 Bgee:P62915 CleanEx:MM_GTF2B
Genevestigator:P62915 GermOnline:ENSMUSG00000028271 Uniprot:P62915
Length = 316
Score = 293 (108.2 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 67/200 (33%), Positives = 112/200 (56%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L A R+ P
Sbjct: 115 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP 174
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L K Q+ A
Sbjct: 175 RTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCLPKQVQMAA 232
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q +++TQ EI + G+ +VT+R+ Y+ +
Sbjct: 233 THIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 292
Query: 313 LENWDDLLPSNYTPAVPPEK 332
DL PS++ P +K
Sbjct: 293 YPRAPDLFPSDFKFDTPVDK 312
>RGD|619735 [details] [associations]
symbol:Gtf2b "general transcription factor IIB" species:10116
"Rattus norvegicus" [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA;ISO] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 RGD:619735 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
GeneTree:ENSGT00390000006671 EMBL:X65948 EMBL:BC085345
IPI:IPI00200556 PIR:S26299 RefSeq:NP_112303.1 UniGene:Rn.6109
ProteinModelPortal:P62916 SMR:P62916 IntAct:P62916 STRING:P62916
PRIDE:P62916 Ensembl:ENSRNOT00000015032 GeneID:81673 KEGG:rno:81673
InParanoid:P62916 NextBio:615268 Genevestigator:P62916
Uniprot:P62916
Length = 316
Score = 293 (108.2 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 67/200 (33%), Positives = 112/200 (56%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L A R+ P
Sbjct: 115 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP 174
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L K Q+ A
Sbjct: 175 RTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCLPKQVQMAA 232
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q +++TQ EI + G+ +VT+R+ Y+ +
Sbjct: 233 THIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 292
Query: 313 LENWDDLLPSNYTPAVPPEK 332
DL PS++ P +K
Sbjct: 293 YPRAPDLFPSDFKFDTPVDK 312
>UNIPROTKB|F2Z4J6 [details] [associations]
symbol:LOC786656 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
OMA:WRAFDPD InterPro:IPR023486 IPI:IPI00697087 UniGene:Bt.39806
GeneTree:ENSGT00390000006671 EMBL:DAAA02007976
ProteinModelPortal:F2Z4J6 SMR:F2Z4J6 PRIDE:F2Z4J6
Ensembl:ENSBTAT00000044137 Uniprot:F2Z4J6
Length = 316
Score = 290 (107.1 bits), Expect = 4.4e-25, P = 4.4e-25
Identities = 66/200 (33%), Positives = 112/200 (56%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L A R+ P
Sbjct: 115 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP 174
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L K Q+ A
Sbjct: 175 RTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCLPKQVQMAA 232
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q +++TQ EI + G+ +VT+R+ Y+ +
Sbjct: 233 THIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 292
Query: 313 LENWDDLLPSNYTPAVPPEK 332
DL P+++ P +K
Sbjct: 293 YPRAPDLFPTDFKFDTPVDK 312
>UNIPROTKB|E2RPG1 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 OMA:WRAFDPD InterPro:IPR023486 CTD:2959
GeneTree:ENSGT00390000006671 EMBL:AAEX03004837 RefSeq:XP_537085.1
ProteinModelPortal:E2RPG1 SMR:E2RPG1 PRIDE:E2RPG1
Ensembl:ENSCAFT00000032192 GeneID:479960 KEGG:cfa:479960
NextBio:20855065 Uniprot:E2RPG1
Length = 316
Score = 290 (107.1 bits), Expect = 4.4e-25, P = 4.4e-25
Identities = 66/200 (33%), Positives = 112/200 (56%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L A R+ P
Sbjct: 115 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP 174
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L K Q+ A
Sbjct: 175 RTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCLPKQVQMAA 232
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q +++TQ EI + G+ +VT+R+ Y+ +
Sbjct: 233 THIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 292
Query: 313 LENWDDLLPSNYTPAVPPEK 332
DL P+++ P +K
Sbjct: 293 YPRAPDLFPTDFKFDTPVDK 312
>UNIPROTKB|Q00403 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046966 "thyroid hormone receptor
binding" evidence=IPI] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 Reactome:REACT_116125 GO:GO:0019048
GO:GO:0005654 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006368 GO:GO:0006367
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
Reactome:REACT_1788 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AL445991 PDB:1VOL PDBsum:1VOL PDB:1C9B
PDBsum:1C9B HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
EMBL:X59268 EMBL:M76766 EMBL:AK289822 EMBL:AB451296 EMBL:BC020597
EMBL:S44184 IPI:IPI00022820 PIR:S17654 RefSeq:NP_001505.1
UniGene:Hs.481852 PDB:1DL6 PDB:1RLY PDB:1RO4 PDB:1TFB PDB:2PHG
PDBsum:1DL6 PDBsum:1RLY PDBsum:1RO4 PDBsum:1TFB PDBsum:2PHG
ProteinModelPortal:Q00403 SMR:Q00403 DIP:DIP-1077N IntAct:Q00403
MINT:MINT-156550 STRING:Q00403 PhosphoSite:Q00403 DMDM:135629
PaxDb:Q00403 PeptideAtlas:Q00403 PRIDE:Q00403 DNASU:2959
Ensembl:ENST00000370500 GeneID:2959 KEGG:hsa:2959 UCSC:uc001dmo.4
GeneCards:GC01M089318 HGNC:HGNC:4648 MIM:189963 neXtProt:NX_Q00403
PharmGKB:PA29035 InParanoid:Q00403 PhylomeDB:Q00403 ChiTaRS:GTF2B
EvolutionaryTrace:Q00403 GenomeRNAi:2959 NextBio:11730
PMAP-CutDB:Q00403 ArrayExpress:Q00403 Bgee:Q00403 CleanEx:HS_GTF2B
Genevestigator:Q00403 GermOnline:ENSG00000137947 Uniprot:Q00403
Length = 316
Score = 290 (107.1 bits), Expect = 4.4e-25, P = 4.4e-25
Identities = 66/200 (33%), Positives = 112/200 (56%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L A R+ P
Sbjct: 115 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP 174
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L K Q+ A
Sbjct: 175 RTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCLPKQVQMAA 232
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q +++TQ EI + G+ +VT+R+ Y+ +
Sbjct: 233 THIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 292
Query: 313 LENWDDLLPSNYTPAVPPEK 332
DL P+++ P +K
Sbjct: 293 YPRAPDLFPTDFKFDTPVDK 312
>UNIPROTKB|F2Z5J6 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:CU179630 EMBL:CU151869 Ensembl:ENSSSCT00000007587
Uniprot:F2Z5J6
Length = 316
Score = 290 (107.1 bits), Expect = 4.4e-25, P = 4.4e-25
Identities = 66/200 (33%), Positives = 112/200 (56%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L A R+ P
Sbjct: 115 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP 174
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L K Q+ A
Sbjct: 175 RTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCLPKQVQMAA 232
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q +++TQ EI + G+ +VT+R+ Y+ +
Sbjct: 233 THIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEILSLQGVADVTIRQSYRLI 292
Query: 313 LENWDDLLPSNYTPAVPPEK 332
DL P+++ P +K
Sbjct: 293 YPRAPDLFPTDFKFDTPVDK 312
>ZFIN|ZDB-GENE-030131-3544 [details] [associations]
symbol:gtf2b "general transcription factor IIB"
species:7955 "Danio rerio" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 ZFIN:ZDB-GENE-030131-3544 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914
HSSP:Q00403 EMBL:BC055569 IPI:IPI00501186 RefSeq:NP_955991.1
UniGene:Dr.78599 ProteinModelPortal:Q7SX98 SMR:Q7SX98 STRING:Q7SX98
GeneID:324823 KEGG:dre:324823 NextBio:20808979 ArrayExpress:Q7SX98
Uniprot:Q7SX98
Length = 316
Score = 290 (107.1 bits), Expect = 4.4e-25, P = 4.4e-25
Identities = 68/200 (34%), Positives = 111/200 (55%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I +A + L +I D LF+ L+ RS +A+A+A L A R+ P
Sbjct: 115 LNAFKEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVP 174
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L K Q+ A
Sbjct: 175 RTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLGLPKQVQMAA 232
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
T+I + R+PIS++AAAIY+A Q ++KTQ EI + G+ +VT+R+ Y+ +
Sbjct: 233 TYIARKAVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLI 292
Query: 313 LENWDDLLPSNYTPAVPPEK 332
DL P ++ P +K
Sbjct: 293 YPRAADLFPPDFKFDTPVDK 312
>UNIPROTKB|Q2KIN8 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 EMBL:BC112570
IPI:IPI00697087 RefSeq:NP_001039607.1 UniGene:Bt.39806
ProteinModelPortal:Q2KIN8 SMR:Q2KIN8 STRING:Q2KIN8 PRIDE:Q2KIN8
GeneID:513231 KEGG:bta:513231 CTD:2959 HOVERGEN:HBG017914
InParanoid:Q2KIN8 OrthoDB:EOG4QRH4F NextBio:20870763 Uniprot:Q2KIN8
Length = 316
Score = 285 (105.4 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 65/200 (32%), Positives = 111/200 (55%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L A R+ P
Sbjct: 115 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP 174
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L K Q+ A
Sbjct: 175 RTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCLPKQVQMAA 232
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++ AAIY+A Q +++TQ EI + G+ +VT+R+ Y+ +
Sbjct: 233 THIARKAVELDLVPGRSPISVAEAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 292
Query: 313 LENWDDLLPSNYTPAVPPEK 332
DL P+++ P +K
Sbjct: 293 YPRAPDLFPTDFKFDTPVDK 312
>FB|FBgn0004915 [details] [associations]
symbol:TfIIB "Transcription factor IIB" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0001174 "transcriptional start site selection at RNA polymerase
II promoter" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS;IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0051101
"regulation of DNA binding" evidence=IDA] [GO:0005667
"transcription factor complex" evidence=ISS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
EMBL:AE014134 GO:GO:0046872 GO:GO:0008270 GO:GO:0006357
GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 GO:GO:0051101 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 GO:GO:0001174 KO:K03124 InterPro:IPR023486
GeneTree:ENSGT00390000006671 EMBL:M88164 EMBL:M91081 EMBL:U02879
EMBL:U35148 EMBL:BT011459 EMBL:BT015269 PIR:A42695
RefSeq:NP_476888.1 UniGene:Dm.4476 ProteinModelPortal:P29052
SMR:P29052 DIP:DIP-17603N IntAct:P29052 MINT:MINT-900118
STRING:P29052 PaxDb:P29052 PRIDE:P29052 EnsemblMetazoa:FBtr0080025
EnsemblMetazoa:FBtr0333489 GeneID:34430 KEGG:dme:Dmel_CG5193
CTD:34430 FlyBase:FBgn0004915 InParanoid:P29052 OMA:CNDETER
OrthoDB:EOG4N02WP PhylomeDB:P29052 GenomeRNAi:34430 NextBio:788458
Bgee:P29052 GermOnline:CG5193 Uniprot:P29052
Length = 315
Score = 271 (100.5 bits), Expect = 5.6e-23, P = 5.6e-23
Identities = 66/197 (33%), Positives = 106/197 (53%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 114 ISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 173
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL+ S ++ + A M RFC L L Q A
Sbjct: 174 RTFKEICAVSKISKKEIGRCFKLTLKALETS--VDLITTADFMCRFCANLDLPNMVQRAA 231
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 232 THIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLM 291
Query: 313 LENWDDLLPSNYTPAVP 329
+ L P ++ P
Sbjct: 292 YPHAAKLFPEDFKFTTP 308
>WB|WBGene00006648 [details] [associations]
symbol:ttb-1 species:6239 "Caenorhabditis elegans"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0009792 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 EMBL:FO081767 RefSeq:NP_503146.1
ProteinModelPortal:O16991 SMR:O16991 STRING:O16991 PaxDb:O16991
EnsemblMetazoa:W03F9.5.1 EnsemblMetazoa:W03F9.5.2
EnsemblMetazoa:W03F9.5.3 GeneID:178544 KEGG:cel:CELE_W03F9.5
UCSC:W03F9.5.1 CTD:178544 WormBase:W03F9.5
GeneTree:ENSGT00390000006671 InParanoid:O16991 NextBio:901568
Uniprot:O16991
Length = 306
Score = 269 (99.8 bits), Expect = 9.3e-23, P = 9.3e-23
Identities = 70/206 (33%), Positives = 111/206 (53%)
Query: 133 LRAYLQII-DVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQE 191
+ A + +I +++ + L +I D A ++F+D + LR ++ EA A A L A R+
Sbjct: 104 MTAAMSLIREMSERIHLPRNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGV 163
Query: 192 PRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVL 251
PRT +EI + V +KEIG+ KI+ +L+ + + + A M RFC L L S Q
Sbjct: 164 PRTFKEICAVSRVSKKEIGRCFKIIVRSLETN--LEQITSADFMSRFCGNLSLPNSIQAA 221
Query: 252 ATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 311
AT I + ++ R PISI+AAAIY+A Q ++++ EI V G E+T+R+ YK
Sbjct: 222 ATRIAKCAVDMDLVAGRTPISIAAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKL 281
Query: 312 LLENWDDLLPSNYTPAVPPEKAFPTT 337
L +L P ++ V P A P +
Sbjct: 282 LYPKALELFPKDFR-FVTPIDALPNS 306
>TAIR|locus:2062703 [details] [associations]
symbol:TFIIB "transcription factor IIB" species:3702
"Arabidopsis thaliana" [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0006413 "translational initiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 EMBL:AC002510 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:U31096 EMBL:AY093060 EMBL:AY128769
EMBL:AY086647 IPI:IPI00524047 PIR:T00819 RefSeq:NP_181694.1
UniGene:At.10174 ProteinModelPortal:P48512 SMR:P48512 IntAct:P48512
STRING:P48512 PaxDb:P48512 PRIDE:P48512 EnsemblPlants:AT2G41630.1
GeneID:818761 KEGG:ath:AT2G41630 TAIR:At2g41630
HOGENOM:HOG000108634 InParanoid:P48512 KO:K03124 OMA:WRAFDPD
PhylomeDB:P48512 ProtClustDB:CLSN2683788 Genevestigator:P48512
InterPro:IPR023486 Uniprot:P48512
Length = 312
Score = 240 (89.5 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 71/199 (35%), Positives = 107/199 (53%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++A+ I ++ LGL I D A +L++ R R+ +AL A L A R+ +P
Sbjct: 106 IQAFKTIATMSERLGLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKP 165
Query: 193 RTLQEISIAAN-VPQKEIGK---YI-KILGEALQLSQPINSNSIAV--HMPRFCTLLQLN 245
RT++EI + AN +KEIG+ YI K LG L+ Q ++ +I M RFC+ L ++
Sbjct: 166 RTIKEICVIANGATKKEIGRAKDYIVKTLG--LEPGQSVDLGTIHAGDFMRRFCSNLAMS 223
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
A A V ++ F RR+PISI+A IY+ QL D +KT +I TG+ E T+
Sbjct: 224 NHAVKAAQEA--VQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTI 281
Query: 306 RKVYKELLENWDDLLPSNY 324
R YK+L + + PS Y
Sbjct: 282 RNSYKDLYPHLSKIAPSWY 300
>TAIR|locus:2076259 [details] [associations]
symbol:AT3G10330 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AC009400 HOGENOM:HOG000108634 KO:K03124
ProtClustDB:CLSN2683788 InterPro:IPR023486 EMBL:AY050421
EMBL:AY060526 EMBL:AY087850 EMBL:Z34661 IPI:IPI00519983
RefSeq:NP_187644.1 UniGene:At.199 ProteinModelPortal:Q9SS44
SMR:Q9SS44 STRING:Q9SS44 PaxDb:Q9SS44 PRIDE:Q9SS44
EnsemblPlants:AT3G10330.1 GeneID:820195 KEGG:ath:AT3G10330
TAIR:At3g10330 InParanoid:Q9SS44 OMA:SNDDQNG PhylomeDB:Q9SS44
Genevestigator:Q9SS44 Uniprot:Q9SS44
Length = 312
Score = 230 (86.0 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 69/197 (35%), Positives = 105/197 (53%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I +A LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 108 AFKTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
Query: 195 LQEI-SIAANVPQKEIGK---YI-KILGEALQLSQPINSNSIAV--HMPRFCTLLQLNKS 247
++EI S+A +KEIG+ YI K LG L+ Q + +I M RFC+ L +
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLG--LETGQLVEMGTIHAGDFMRRFCS--NLGMT 223
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
Q + V ++ F RR+PISI+AA IY+ QL D++K +I TG+ E T+R
Sbjct: 224 NQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRN 283
Query: 308 VYKELLENWDDLLPSNY 324
YK+L + ++P+ Y
Sbjct: 284 SYKDLYPHLSKIIPAWY 300
>POMBASE|SPAC16E8.16 [details] [associations]
symbol:SPAC16E8.16 "transcription factor TFIIB"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IDA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 PomBase:SPAC16E8.16 GO:GO:0005634 EMBL:CU329670
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 PIR:T37796
RefSeq:NP_594229.1 ProteinModelPortal:O13749 SMR:O13749
STRING:O13749 EnsemblFungi:SPAC16E8.16.1 GeneID:2542339
KEGG:spo:SPAC16E8.16 OMA:VLRWRKW OrthoDB:EOG4RZ27R NextBio:20803400
Uniprot:O13749
Length = 340
Score = 209 (78.6 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 66/195 (33%), Positives = 95/195 (48%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L AY +I + + L I D A QL++ L+ +S +++ A + A R+ + P
Sbjct: 119 LTAYKEIGAMCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVP 178
Query: 193 RTLQEISIAANVPQKEIGKYIKIL------GEALQLS-------QPINSNSIAVH--MPR 237
RT EI NVP+KEIG+ K L G AL S + I S+S + M R
Sbjct: 179 RTFMEICTLTNVPKKEIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVR 238
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC L L S Q A + + R+PISI+A+ IY+ L KT EI +V
Sbjct: 239 FCNRLMLPMSVQSAAAELARRAGLQGTLAGRSPISIAASGIYMISALMGYPKTPKEISEV 298
Query: 298 TGLTEVTLRKVYKEL 312
TG+++ T+R YK L
Sbjct: 299 TGVSDSTIRIAYKLL 313
Score = 48 (22.0 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 23 TECGSCGRVIAER 35
T CGSCG V+ +R
Sbjct: 39 TVCGSCGLVLGDR 51
>ASPGD|ASPL0000072123 [details] [associations]
symbol:AN4928 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
EMBL:BN001303 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 EMBL:AACD01000084 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486
OMA:VLRWRKW OrthoDB:EOG4RZ27R RefSeq:XP_662532.1
ProteinModelPortal:Q5B3F2 STRING:Q5B3F2
EnsemblFungi:CADANIAT00005470 GeneID:2872725 KEGG:ani:AN4928.2
Uniprot:Q5B3F2
Length = 351
Score = 110 (43.8 bits), Expect = 9.4e-12, Sum P(3) = 9.4e-12
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 237 RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK 296
RFC LL L +++ + + V + R+P+SI AA IY+A L K+ EI +
Sbjct: 250 RFCNLLDLPFQVTSVSSALSDRVTTEGNLAGRSPLSIVAACIYMASYLMGHPKSAKEISQ 309
Query: 297 VTGLTEVTLRKVYKELLENWDDLLPSNY 324
V +++ T+R YK+L + L+ +
Sbjct: 310 VAHVSDGTIRGAYKQLYTERESLVDKEW 337
Score = 101 (40.6 bits), Expect = 9.4e-12, Sum P(3) = 9.4e-12
Identities = 29/100 (29%), Positives = 48/100 (48%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L AY +I + G+ ++ D A LF+ A + +S + + + A R+ + P
Sbjct: 125 LAAYKEIGALCDGFGIPKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRKCKVP 184
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPIN-SNSI 231
RT EI V +KEIG+ K L E SQ + +N++
Sbjct: 185 RTFTEIFAVTKVSRKEIGRIYKAL-EKFFTSQNLERANAV 223
Score = 62 (26.9 bits), Expect = 9.4e-12, Sum P(3) = 9.4e-12
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNH 40
CP C G T CGSCG V+A+R+ H
Sbjct: 26 CPECKEMPPNLEFP--GSHETVCGSCGLVLADREIDMH 61
Score = 39 (18.8 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 443 DTKPATTTLRPSQFPCTPVSTVTSLTWPFR 472
DT ATT+ +PS C+ + L PF+
Sbjct: 234 DTYTATTSTKPSDL-CSRFCNLLDL--PFQ 260
>UNIPROTKB|B1APE2 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL445991
HOGENOM:HOG000108634 InterPro:IPR023486 HOVERGEN:HBG017914
UniGene:Hs.481852 HGNC:HGNC:4648 ChiTaRS:GTF2B IPI:IPI00643006
SMR:B1APE2 STRING:B1APE2 Ensembl:ENST00000418217 Uniprot:B1APE2
Length = 231
Score = 168 (64.2 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 41/123 (33%), Positives = 68/123 (55%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L A R+ P
Sbjct: 110 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP 169
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L K Q+ A
Sbjct: 170 RTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCLPKQVQMAA 227
Query: 253 THI 255
THI
Sbjct: 228 THI 230
>CGD|CAL0005818 [details] [associations]
symbol:SUA72 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000679
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS50114
PROSITE:PS51134 CGD:CAL0005818 EMBL:AACQ01000315 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124
InterPro:IPR023486 RefSeq:XP_710164.1 ProteinModelPortal:Q59K82
STRING:Q59K82 GeneID:3648239 KEGG:cal:CaO19.3519 Uniprot:Q59K82
Length = 346
Score = 172 (65.6 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 62/205 (30%), Positives = 99/205 (48%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I ++ + L D A L++ L+ ++ +++ A ++ R A PRT
Sbjct: 128 AYQKISELCNGYQLPKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRT 187
Query: 195 LQEISIAANVPQKEIGKYI----KILGEALQ---LSQPI--NSNSIAVH-----MPRFCT 240
L+EI NVP K+I K KI+ L S I ++S+ H + RFC+
Sbjct: 188 LEEIRALTNVPTKQIAKVTGLIKKIIRSHLNNDDASTSIVDETSSLTTHSAEDLIRRFCS 247
Query: 241 LLQLNKSAQVLATHIGEVVINKCF----CTRRNPISISAAAIYLACQ-LEDKRKTQAEIC 295
L L+ + T E V KC R+P +I+A +I+LA + L D + TQ +I
Sbjct: 248 HLGLS----LAITSASEYVARKCHDLGVLAGRSPTTIAATSIFLAAKSLGDTKLTQQQIR 303
Query: 296 KVTGLTEVTLRKVYKELLENWDDLL 320
TG++ T++ YK L EN DL+
Sbjct: 304 DKTGVSIGTIKNSYKILQENAKDLI 328
Score = 42 (19.8 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 25 CGSCGRVIAER 35
CG CG V+++R
Sbjct: 43 CGQCGLVLSDR 53
>UNIPROTKB|Q59K82 [details] [associations]
symbol:SUA72 "Likely transcription factor TFIIB"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000679
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS50114
PROSITE:PS51134 CGD:CAL0005818 EMBL:AACQ01000315 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124
InterPro:IPR023486 RefSeq:XP_710164.1 ProteinModelPortal:Q59K82
STRING:Q59K82 GeneID:3648239 KEGG:cal:CaO19.3519 Uniprot:Q59K82
Length = 346
Score = 172 (65.6 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 62/205 (30%), Positives = 99/205 (48%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I ++ + L D A L++ L+ ++ +++ A ++ R A PRT
Sbjct: 128 AYQKISELCNGYQLPKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRT 187
Query: 195 LQEISIAANVPQKEIGKYI----KILGEALQ---LSQPI--NSNSIAVH-----MPRFCT 240
L+EI NVP K+I K KI+ L S I ++S+ H + RFC+
Sbjct: 188 LEEIRALTNVPTKQIAKVTGLIKKIIRSHLNNDDASTSIVDETSSLTTHSAEDLIRRFCS 247
Query: 241 LLQLNKSAQVLATHIGEVVINKCF----CTRRNPISISAAAIYLACQ-LEDKRKTQAEIC 295
L L+ + T E V KC R+P +I+A +I+LA + L D + TQ +I
Sbjct: 248 HLGLS----LAITSASEYVARKCHDLGVLAGRSPTTIAATSIFLAAKSLGDTKLTQQQIR 303
Query: 296 KVTGLTEVTLRKVYKELLENWDDLL 320
TG++ T++ YK L EN DL+
Sbjct: 304 DKTGVSIGTIKNSYKILQENAKDLI 328
Score = 42 (19.8 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 25 CGSCGRVIAER 35
CG CG V+++R
Sbjct: 43 CGQCGLVLSDR 53
>CGD|CAL0001439 [details] [associations]
symbol:SUA71 species:5476 "Candida albicans" [GO:0001139
"core RNA polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0001129 "TBP-class protein binding RNA polymerase II
transcription factor activity involved in preinitiation complex
assembly" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:2000679 "positive regulation of transcription regulatory region
DNA binding" evidence=IEA] [GO:0001174 "transcriptional start site
selection at RNA polymerase II promoter" evidence=IEA] [GO:0051123
"RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0001113 "transcriptional open complex formation
at RNA polymerase II promoter" evidence=IEA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0001439 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 KO:K03124
InterPro:IPR023486 RefSeq:XP_721286.1 RefSeq:XP_721557.1
ProteinModelPortal:Q5AHZ3 STRING:Q5AHZ3 GeneID:3636879
GeneID:3637101 KEGG:cal:CaO19.10577 KEGG:cal:CaO19.3059
Uniprot:Q5AHZ3
Length = 344
Score = 156 (60.0 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 57/207 (27%), Positives = 98/207 (47%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY++I + L + D A ++++ LR +S E++ A++ R+A R+
Sbjct: 127 AYIKISQMCDGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARS 186
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSN-------SIAVHMP-------RFCT 240
+EI NVP+KEIGK KI+ + ++ N N SI RFC+
Sbjct: 187 FKEIWALTNVPRKEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCS 246
Query: 241 LLQLNKSAQVLATHIGEVVINKC----FCTRRNPISISAAAIYLACQLEDKRKTQAEICK 296
L +N QV T+ E + +C R+P +I+A IY+A + ++I
Sbjct: 247 HLGVN--TQV--TNGAEYIARRCKEVGVLAGRSPTTIAATVIYMASLVFGFDLPPSKISD 302
Query: 297 VTGLTEVTLRKVYKELLENWDDLL-PS 322
TG+++ T++ YK + E + L+ PS
Sbjct: 303 KTGVSDGTIKTSYKYMYEEKEQLIDPS 329
Score = 49 (22.3 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAER 35
+ CP C + I CGSCG V+++R
Sbjct: 21 LTCPECKIFPPDLVERFSEGDIV-CGSCGLVLSDR 54
>SGD|S000006290 [details] [associations]
symbol:SUA7 "Transcription factor TFIIB" species:4932
"Saccharomyces cerevisiae" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0001129
"TBP-class protein binding RNA polymerase II transcription factor
activity involved in preinitiation complex assembly"
evidence=IMP;IDA] [GO:0001139 "core RNA polymerase II recruiting
transcription factor activity" evidence=IMP;IDA] [GO:0017025
"TBP-class protein binding" evidence=IEA;IDA;IPI] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core binding"
evidence=IDA;IPI] [GO:2000679 "positive regulation of transcription
regulatory region DNA binding" evidence=IDA] [GO:0001174
"transcriptional start site selection at RNA polymerase II
promoter" evidence=IMP] [GO:0001113 "transcriptional open complex
formation at RNA polymerase II promoter" evidence=IMP]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
SGD:S000006290 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:BK006949 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 EMBL:U51033 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 GO:GO:0017025 GO:GO:0000993 GO:GO:2000679
GO:GO:0001139 GO:GO:0001129 GO:GO:0001113 PDB:3K1F PDB:3K7A
PDB:4BBR PDB:4BBS PDBsum:3K1F PDBsum:3K7A PDBsum:4BBR PDBsum:4BBS
GO:GO:0001174 HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486
OMA:SNDDQNG GeneTree:ENSGT00390000006671 OrthoDB:EOG4RZ27R
EMBL:M81380 EMBL:AY693232 PIR:S26707 RefSeq:NP_015411.1
ProteinModelPortal:P29055 SMR:P29055 DIP:DIP-701N IntAct:P29055
MINT:MINT-473341 STRING:P29055 PaxDb:P29055 PeptideAtlas:P29055
EnsemblFungi:YPR086W GeneID:856201 KEGG:sce:YPR086W CYGD:YPR086w
EvolutionaryTrace:P29055 NextBio:981402 Genevestigator:P29055
GermOnline:YPR086W Uniprot:P29055
Length = 345
Score = 149 (57.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 55/196 (28%), Positives = 98/196 (50%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
+ D A + + D A++L C L+ +S+E++ A+++ R A+ RT +EI
Sbjct: 136 LCDAAELPKIVKDCAKEAYKL---CHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEI 192
Query: 199 SIAANVPQKEIGKYIKILGEALQ-LSQP----INSNSIA-----VHMPRFCTLLQLNKSA 248
+V KE GK + I+ L+ S+ I++++++ ++PRFC+ L L
Sbjct: 193 QSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGL--PM 250
Query: 249 QVLATHIGEVVINKCFCTR----RNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
QV T E KC + ++PI+I+ +IYL L T A++ + +TE T
Sbjct: 251 QV--TTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGT 308
Query: 305 LRKVYKELLENWDDLL 320
++ YK L E+ D L+
Sbjct: 309 IKSGYKILYEHRDKLV 324
>UNIPROTKB|F1PRK4 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
PRINTS:PR00685 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:AAEX03006120 EMBL:AAEX03006121
Ensembl:ENSCAFT00000029237 Uniprot:F1PRK4
Length = 616
Score = 150 (57.9 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 64/261 (24%), Positives = 106/261 (40%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
QI + + L L+ D AF F+ S R R + + A L R P L +
Sbjct: 31 QIHHLGNQLQLNQHCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLD 90
Query: 198 ISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQL---NKSAQVLATH 254
+S V +GK +L L ++ P + +++PRF LL+ N + A
Sbjct: 91 LSDLLQVNVYVLGKTFLLLARELCINAP--AIDPCLYIPRFAHLLEFGEKNHEVSMTALR 148
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ + + T R P + AA+ +A ++ D R+T E+ V + E TLRK E +
Sbjct: 149 LLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFED 208
Query: 315 NWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDKDKQPETKSIKVNEVI 374
L + + E + T+G+ +++ E K ++ E + + I
Sbjct: 209 TPTSQLTVDEFMRIDLEGECDPPSYTAGQRK-LRLKQLEQVLSKKLEEVEGEISSYQDAI 267
Query: 375 ETESNGPNADADGAHAPTLKR 395
E E A GA A TL R
Sbjct: 268 EIELENSRPKAKGALA-TLTR 287
>TAIR|locus:2082583 [details] [associations]
symbol:AT3G57370 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0010440 "stomatal lineage progression"
evidence=RCA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
EMBL:CP002686 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
EMBL:AL137080 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K03124 HSSP:Q00403
EMBL:AY463602 IPI:IPI00522698 PIR:T45815 RefSeq:NP_191296.1
UniGene:At.34838 ProteinModelPortal:Q9M2L0 SMR:Q9M2L0 STRING:Q9M2L0
PRIDE:Q9M2L0 EnsemblPlants:AT3G57370.1 GeneID:824904
KEGG:ath:AT3G57370 TAIR:At3g57370 InParanoid:Q9M2L0
PhylomeDB:Q9M2L0 ArrayExpress:Q9M2L0 Genevestigator:Q9M2L0
Uniprot:Q9M2L0
Length = 360
Score = 146 (56.5 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 51/196 (26%), Positives = 95/196 (48%)
Query: 137 LQIIDVASI---LGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPR 193
L I+ + +I L L I A ++F+ S + R+V L A + A R+ R
Sbjct: 159 LSIVSIEAISNGLKLPATIKGQANEIFKVVESYARGKERNV--LFAACIYIACRDNDMTR 216
Query: 194 TLQEISIAANVPQ-KEIGKYIKILGEALQLSQP-INSNSIAVHMPRFCTLLQLNKSAQVL 251
T++EIS AN +I + + + E L++++ S A + RFC++ +L+K A
Sbjct: 217 TMREISRFANKASISDISETVGFIAEKLEINKNWYMSIETANFIKRFCSIFRLDKEAVEA 276
Query: 252 ATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 311
A E + RR P+S++A +Y+ +L ++ + + TG+ E T++ Y +
Sbjct: 277 ALEAAESY-DYMTNGRRAPVSVAAGIVYVIARLSYEKHLLKGLIEATGVAENTIKGTYGD 335
Query: 312 LLENWDDLLPSNYTPA 327
L N ++P+ + A
Sbjct: 336 LYPNLPTIVPTWFANA 351
>TAIR|locus:2093852 [details] [associations]
symbol:pBRP2 "plant-specific TFIIB-related protein 2"
species:3702 "Arabidopsis thaliana" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046686 "response to cadmium ion" evidence=IEP]
[GO:0000769 "syncytium formation by mitosis without cytokinesis"
evidence=IMP] [GO:0009960 "endosperm development" evidence=IMP]
[GO:0010440 "stomatal lineage progression" evidence=RCA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0046686 EMBL:CP002686 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 GO:GO:0009960 GO:GO:0003743
EMBL:AP001309 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K03124 HSSP:Q00403
IPI:IPI00533744 RefSeq:NP_189584.1 UniGene:At.36925
ProteinModelPortal:Q9LIA6 SMR:Q9LIA6 STRING:Q9LIA6
EnsemblPlants:AT3G29380.1 GeneID:822598 KEGG:ath:AT3G29380
TAIR:At3g29380 InParanoid:Q9LIA6 OMA:NSRACEI PhylomeDB:Q9LIA6
ProtClustDB:CLSN2913417 ArrayExpress:Q9LIA6 Genevestigator:Q9LIA6
GO:GO:0000769 Uniprot:Q9LIA6
Length = 336
Score = 144 (55.7 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 60/202 (29%), Positives = 102/202 (50%)
Query: 134 RAYLQIIDVASILGLDYDICDHAFQLFR--DCCSATCLRN-RSVEALATAALVQAIREAQ 190
+A+ +I + L LD I A ++ D + T LR + + A+ A++ A RE Q
Sbjct: 114 QAFEEIQRMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQ 173
Query: 191 EPRTLQEISIAAN-VPQKEIGKYIKILGEALQLSQPINSNSIAVH-----MPRFCTLLQL 244
RTL+EI+ AN V +K+I K ++ L+ Q S S A+ + RFC+ L +
Sbjct: 174 LSRTLKEIAEVANGVDKKDIRKESLVIKRVLESHQTSVSASQAIINTGELVRRFCSKLDI 233
Query: 245 NKSAQVLATHIGEVVIN-KCFCTRRNPISISAAAIYLACQL-EDKRKTQAEICKVTGLTE 302
++ +++A I E V + F RRNP S+ AA I++ + + RK EI V + E
Sbjct: 234 SQR-EIMA--IPEAVEKAENFDIRRNPKSVLAAIIFMISHISQTNRKPIREIGIVAEVVE 290
Query: 303 VTLRKVYKELLENWDDLLPSNY 324
T++ K++ ++P+ Y
Sbjct: 291 NTIKNSVKDMYPYALKIIPNWY 312
>UNIPROTKB|F1NQ85 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:AADN02003843 EMBL:AADN02003838
EMBL:AADN02003839 EMBL:AADN02003840 EMBL:AADN02003841
EMBL:AADN02003842 IPI:IPI00588765 Ensembl:ENSGALT00000019132
Uniprot:F1NQ85
Length = 593
Score = 148 (57.2 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 61/251 (24%), Positives = 104/251 (41%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
QI + + L L+ D AF F+ S R R + + A L R P L +
Sbjct: 90 QIHHLGNQLQLNQHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLD 149
Query: 198 ISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQL---NKSAQVLATH 254
+S V +GK +L L ++ P + +++PRF +L+ N + A
Sbjct: 150 LSDLLQVNVYVLGKTFLLLARELCINAP--AIDPCLYIPRFAHMLEFGDKNHEVSMTALR 207
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ + + T R P + AA+ +A ++ D R+T E+ +V + E TLRK E
Sbjct: 208 LLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTEFEY 267
Query: 315 NWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDK--DKQPETKSIKVNE 372
L + + E+ + T+G+ +K+ E K D + E S +
Sbjct: 268 TPTSQLTIDEFMRIDLEEECDPPSFTAGQKK-LKIQQLEKALSKKLEDFEGEISSYQDEI 326
Query: 373 VIETESNGPNA 383
IE E++ P A
Sbjct: 327 EIELENSRPKA 337
>MGI|MGI:1919558 [details] [associations]
symbol:Brf1 "BRF1 homolog, subunit of RNA polymerase III
transcription initiation factor IIIB (S. cerevisiae)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 MGI:MGI:1919558 GO:GO:0005634 GO:GO:0045893
GO:GO:0046872 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 HOVERGEN:HBG023540
OrthoDB:EOG4NGGMJ EMBL:BC037224 IPI:IPI00319141 UniGene:Mm.196721
ProteinModelPortal:Q8CFK2 SMR:Q8CFK2 STRING:Q8CFK2
PhosphoSite:Q8CFK2 PRIDE:Q8CFK2 UCSC:uc007pfn.1
HOGENOM:HOG000198688 InParanoid:Q8CFK2 Genevestigator:Q8CFK2
GermOnline:ENSMUSG00000011158 Uniprot:Q8CFK2
Length = 676
Score = 147 (56.8 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 61/252 (24%), Positives = 101/252 (40%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+ S L L+ D AF F+ S R R + + A L R P L ++S
Sbjct: 96 LGSQLQLNQHCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDL 155
Query: 202 ANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQL---NKSAQVLATHIGEV 258
V +GK +L L ++ P + +++PRF LL+ N + A + +
Sbjct: 156 LQVNVYVLGKTFLLLARELCINAP--AIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQR 213
Query: 259 VINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318
+ T R P + AA+ +A ++ D R+T E+ V + E TLRK E +
Sbjct: 214 MKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTS 273
Query: 319 LLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDKDKQPETKSIKVNEVIETES 378
L + + E+ + T+G+ +V S K ++ E + + IE E
Sbjct: 274 QLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLS-KKLEEVEGEISSYQDAIEIEL 332
Query: 379 NGPNADADGAHA 390
A GA A
Sbjct: 333 ENSRPKAKGALA 344
>TAIR|locus:2139227 [details] [associations]
symbol:AT4G10680 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0003743
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 EMBL:AL049523 EMBL:AF080119
EMBL:AL161518 KO:K03124 HSSP:P61999 EMBL:AY463604 IPI:IPI00527305
PIR:T01909 RefSeq:NP_192806.1 UniGene:At.33613
ProteinModelPortal:O82494 SMR:O82494 STRING:O82494
EnsemblPlants:AT4G10680.1 GeneID:826661 KEGG:ath:AT4G10680
TAIR:At4g10680 InParanoid:O82494 PhylomeDB:O82494
Genevestigator:O82494 Uniprot:O82494
Length = 182
Score = 128 (50.1 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + LGL + I + A ++ +S+ L A++ +A R+ P+T
Sbjct: 94 AYAEIERMTEALGLTFGISNTACKILSKLDKKNLRGGKSLRGLCAASVSRACRQVNIPKT 153
Query: 195 LQEISIAANVPQKEIGKYIKILGEA 219
L+EIS ANV KEI K +K+LG++
Sbjct: 154 LKEISAVANVDMKEINKAVKLLGDS 178
>ZFIN|ZDB-GENE-030131-6248 [details] [associations]
symbol:brf1b "BRF1 homolog, subunit of RNA
polymerase III transcription initiation factor IIIBb" species:7955
"Danio rerio" [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 ZFIN:ZDB-GENE-030131-6248
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 KO:K15196 HOVERGEN:HBG023540 HSSP:P61999
EMBL:BC060523 IPI:IPI00500469 RefSeq:NP_956183.1 UniGene:Dr.7329
ProteinModelPortal:Q6P9Z3 STRING:Q6P9Z3 GeneID:334316
KEGG:dre:334316 CTD:334316 InParanoid:Q6P9Z3 NextBio:20810348
Uniprot:Q6P9Z3
Length = 693
Score = 150 (57.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 63/246 (25%), Positives = 105/246 (42%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
QI ++ S L L+ D AF F+ S R R + + A L R P L +
Sbjct: 91 QIHNLGSQLQLNQHCLDTAFNFFKMVVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLD 150
Query: 198 ISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN-KSAQVLATHIG 256
+S V +GK +L L ++ P + +++PRF +L+ K+ +V T +
Sbjct: 151 LSDLLQVNVYILGKTFLLLARELCINAP--AVDPCLYIPRFAHMLEFGEKTHEVSMTALR 208
Query: 257 EVVINK--CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ K T R P + AA+ +A ++ + R+T E+ V + E TLRK E E
Sbjct: 209 LLQRMKRDWMHTGRRPSGLCGAALLVAARMHEFRRTVKEVISVVKVCETTLRKRLTEFEE 268
Query: 315 NWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDKDKQPETKSIKVNEVI 374
L + V EK + +G+ VK+ E V K ++ + + + I
Sbjct: 269 TPTSSLTIDEFMRVDLEKECDPPSFVAGQKK-VKMQQLEQELVKKLEEYQGEIDSYRDEI 327
Query: 375 ETESNG 380
ET+ G
Sbjct: 328 ETQLAG 333
Score = 39 (18.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 6 CSAAQGRCATTSTGRSITECGSCGRVIAE 34
C G T R C +CG V+ +
Sbjct: 5 CKNCGGSDIDTDPARGSAVCTACGSVLED 33
>UNIPROTKB|Q92994 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000126 "transcription factor TFIIIB complex"
evidence=NAS] [GO:0006384 "transcription initiation from RNA
polymerase III promoter" evidence=TAS] [GO:0009303 "rRNA
transcription" evidence=TAS] [GO:0009304 "tRNA transcription"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0045893
EMBL:CH471061 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
GO:GO:0009303 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 Reactome:REACT_1788 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL512355 GO:GO:0006384
GO:GO:0000126 KO:K15196 EMBL:U28838 EMBL:U75276 EMBL:AJ297406
EMBL:AJ297407 EMBL:AJ297408 EMBL:AK096471 EMBL:AK294899
EMBL:AK295579 EMBL:BC016743 EMBL:BC071637 EMBL:BC086856
EMBL:BC103859 IPI:IPI00016859 IPI:IPI00157643 IPI:IPI00216075
IPI:IPI00334140 IPI:IPI00607889 IPI:IPI01011010 IPI:IPI01012378
PIR:I39065 RefSeq:NP_001229715.1 RefSeq:NP_001229716.1
RefSeq:NP_001229717.1 RefSeq:NP_001229718.1 RefSeq:NP_001229719.1
RefSeq:NP_001510.2 RefSeq:NP_663718.1 UniGene:Hs.424484
ProteinModelPortal:Q92994 SMR:Q92994 IntAct:Q92994
MINT:MINT-2859415 STRING:Q92994 PhosphoSite:Q92994 DMDM:20455319
PaxDb:Q92994 PRIDE:Q92994 Ensembl:ENST00000327359
Ensembl:ENST00000379937 Ensembl:ENST00000392557
Ensembl:ENST00000440513 Ensembl:ENST00000446501
Ensembl:ENST00000546474 Ensembl:ENST00000548421 GeneID:2972
KEGG:hsa:2972 UCSC:uc001yql.2 UCSC:uc010axg.1 CTD:2972
GeneCards:GC14M105675 HGNC:HGNC:11551 MIM:604902 neXtProt:NX_Q92994
PharmGKB:PA164741296 HOVERGEN:HBG023540 InParanoid:Q92994
OMA:YGCDGDE OrthoDB:EOG4NGGMJ PhylomeDB:Q92994 ChiTaRS:BRF1
GenomeRNAi:2972 NextBio:11787 ArrayExpress:Q92994 Bgee:Q92994
CleanEx:HS_BRF1 Genevestigator:Q92994 GermOnline:ENSG00000185024
GO:GO:0009304 Uniprot:Q92994
Length = 677
Score = 143 (55.4 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 60/252 (23%), Positives = 99/252 (39%)
Query: 146 LGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVP 205
L L+ D AF F+ S R R + + A L R P L ++S V
Sbjct: 100 LQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVN 159
Query: 206 QKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQL---NKSAQVLATHIGEVVINK 262
+GK +L L ++ P + +++PRF LL+ N + A + + +
Sbjct: 160 VYVLGKTFLLLARELCINAP--AIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRD 217
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPS 322
T R P + AA+ +A ++ D R+T E+ V + E TLRK E + L
Sbjct: 218 WMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTI 277
Query: 323 NYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDKDKQPETKSIKVNEVIETESNGPN 382
+ + E+ + T+G+ +V S K ++ E + + IE E
Sbjct: 278 DEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLS-KKLEEVEGEISSYQDAIEIELENSR 336
Query: 383 ADADGAHAPTLK 394
A G A K
Sbjct: 337 PKAKGGLASLAK 348
>UNIPROTKB|B1APE1 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL445991
HOGENOM:HOG000108634 InterPro:IPR023486 HOVERGEN:HBG017914
UniGene:Hs.481852 HGNC:HGNC:4648 ChiTaRS:GTF2B IPI:IPI00643469
SMR:B1APE1 STRING:B1APE1 Ensembl:ENST00000448623 Uniprot:B1APE1
Length = 224
Score = 129 (50.5 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 32/108 (29%), Positives = 56/108 (51%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L A R+ P
Sbjct: 114 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP 173
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQP-INSNSIAVHMPRFC 239
RT +EI + + +KEIG+ K++ +AL+ S I + R+C
Sbjct: 174 RTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRNWRYC 221
>UNIPROTKB|G3X7R9 [details] [associations]
symbol:G3X7R9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000812 InterPro:IPR011665
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:DAAA02053372 EMBL:DAAA02053373
EMBL:DAAA02053374 EMBL:DAAA02053375 EMBL:DAAA02053376
Ensembl:ENSBTAT00000044278 Uniprot:G3X7R9
Length = 639
Score = 130 (50.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 60/262 (22%), Positives = 101/262 (38%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
QI + + L L+ D AF F+ S R R + A L R PR L+
Sbjct: 31 QIHHLGNQLQLNQHCLDTAFNFFKMAVSKHLTRGRRTAHVVAACLYLVCRTEGTPRILRH 90
Query: 198 ISIAA--NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQL---NKSAQVLA 252
+++ +V E + ++ L + N +++PRF LL+ N + A
Sbjct: 91 LAVHGGFSVHVFESNRTFLVISRYLCVEAEALRNP-CLYIPRFAHLLEFGEKNHEVSMTA 149
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ + + T R P + AA+ +A ++ D R+T E+ V + E TLRK E
Sbjct: 150 LRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 209
Query: 313 LENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDKDKQPETKSIKVNE 372
+ L + + E+ + T+G+ +V S + E + +
Sbjct: 210 EDTPTSQLTVDEFMKIDLEEECDPPSYTAGQRKLRLKQLEQVLSKQLEAV-EGEITTYQD 268
Query: 373 VIETESNGPNADADGAHAPTLK 394
IE E A GA A K
Sbjct: 269 AIEIELENSRPKAKGALASLTK 290
>UNIPROTKB|J9PB52 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685 GO:GO:0005634
GO:GO:0045893 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
GeneTree:ENSGT00390000010349 EMBL:AAEX03006120 EMBL:AAEX03006121
Ensembl:ENSCAFT00000046229 Uniprot:J9PB52
Length = 562
Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
Identities = 55/229 (24%), Positives = 93/229 (40%)
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R R + + A L R P L ++S V +GK +L L ++ P +
Sbjct: 9 RGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAP--AI 66
Query: 230 SIAVHMPRFCTLLQL---NKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLED 286
+++PRF LL+ N + A + + + T R P + AA+ +A ++ D
Sbjct: 67 DPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHD 126
Query: 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPT 346
R+T E+ V + E TLRK E + L + + E + T+G+
Sbjct: 127 FRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFMRIDLEGECDPPSYTAGQRK- 185
Query: 347 VKVDSGEVTSVDKDKQPETKSIKVNEVIETESNGPNADADGAHAPTLKR 395
+++ E K ++ E + + IE E A GA A TL R
Sbjct: 186 LRLKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALA-TLTR 233
>ZFIN|ZDB-GENE-030131-6334 [details] [associations]
symbol:brf1a "BRF1 homolog, subunit of RNA
polymerase III transcription initiation factor IIIBa" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 ZFIN:ZDB-GENE-030131-6334
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0003743 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 KO:K15196
HOVERGEN:HBG023540 OrthoDB:EOG4NGGMJ HOGENOM:HOG000198688
HSSP:P61999 EMBL:BC046877 IPI:IPI00488634 RefSeq:NP_956192.1
UniGene:Dr.20342 ProteinModelPortal:Q802Z8 GeneID:334402
KEGG:dre:334402 CTD:334402 InParanoid:Q802Z8 NextBio:20810386
Uniprot:Q802Z8
Length = 661
Score = 127 (49.8 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 58/250 (23%), Positives = 99/250 (39%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
QI + L ++ D AF ++ S + R + A L R P L +
Sbjct: 90 QINHLGHQLQMNQHCLDTAFNFYKMALSKHLTKGRKSTHVIAACLYLVCRTEGTPHMLLD 149
Query: 198 ISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN-KSAQVLATHIG 256
+S V +GK +L L ++ P + +++PRF LL+ KS +V T +
Sbjct: 150 LSDLLQVNVYVLGKTFLVLARELCINAP--AIDPCLYIPRFAQLLEFGEKSHEVSMTALR 207
Query: 257 EVVINK--CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ K T R P + AA+ +A ++ + R+T E+ V + E TLRK E +
Sbjct: 208 LLQRMKRDWMHTGRRPSGLCGAALLVAARMHEFRRTIKEVISVVKVCEATLRKRLYEFED 267
Query: 315 N-WDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDKDKQPETKSIKVNEV 373
+L + ++ P + R +K E+ D + E +
Sbjct: 268 TPTSELTIEEFMKTDLEQECDPPSFAAGLRKQKLKQIEQELAKKVDDIEGEICGYQDEIE 327
Query: 374 IETESNGPNA 383
+E ES P A
Sbjct: 328 VELESCRPKA 337
Score = 39 (18.8 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 6 CSAAQGRCATTSTGRSITECGSCGRVIAE 34
C G R + C CG V+ +
Sbjct: 4 CKTCGGTDIDVDQARGVAVCMGCGSVLED 32
>FB|FBgn0038499 [details] [associations]
symbol:Brf "Brf" species:7227 "Drosophila melanogaster"
[GO:0006359 "regulation of transcription from RNA polymerase III
promoter" evidence=ISS;IDA;IPI] [GO:0000126 "transcription factor
TFIIIB complex" evidence=ISS] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005667 "transcription factor complex"
evidence=IPI] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IDA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001046 "core
promoter sequence-specific DNA binding" evidence=IPI] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 GO:GO:0006383 GO:GO:0006359 eggNOG:COG1405
PANTHER:PTHR11618 EMBL:AF262374 HSSP:P61999
ProteinModelPortal:Q9NB72 SMR:Q9NB72 STRING:Q9NB72 PaxDb:Q9NB72
PRIDE:Q9NB72 FlyBase:FBgn0038499 InParanoid:Q9NB72
OrthoDB:EOG4SJ3VV ArrayExpress:Q9NB72 Bgee:Q9NB72 Uniprot:Q9NB72
Length = 662
Score = 122 (48.0 bits), Expect = 0.00057, Sum P(2) = 0.00056
Identities = 47/173 (27%), Positives = 73/173 (42%)
Query: 146 LGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVP 205
L L D A F+ R R + A + R L +IS +
Sbjct: 101 LQLSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQIC 160
Query: 206 QKEIGK-YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN-KSAQVLATHIGEVVINK- 262
E+G+ Y+K L AL ++ P S +++ RF LQL K+ +V T + V K
Sbjct: 161 SYELGRTYLK-LSHALCINIP--SLDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKK 217
Query: 263 -CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
C + R P + AA+ +A ++ D +T ++ V + E TLRK E E
Sbjct: 218 DCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAE 270
Score = 44 (20.5 bits), Expect = 0.00057, Sum P(2) = 0.00056
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 348 KVDSGEVTSVDKD-KQPETKSIKVNEV--IETESNGPNADADGAHAPTLK 394
K++ G S D +QPETK V E ++ +++ P+ + + TL+
Sbjct: 591 KLEVGLPVSQAADVEQPETKPAVVVEADDLDEDADDPDVEPEAEPEATLQ 640
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 510 500 0.00084 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 625 (66 KB)
Total size of DFA: 297 KB (2154 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.55u 0.12s 48.67t Elapsed: 00:00:02
Total cpu time: 48.56u 0.12s 48.68t Elapsed: 00:00:02
Start: Sat May 11 00:09:26 2013 End: Sat May 11 00:09:28 2013