BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046187
(510 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255561140|ref|XP_002521582.1| RNA polymerase II transcription factor, putative [Ricinus communis]
gi|223539260|gb|EEF40853.1| RNA polymerase II transcription factor, putative [Ricinus communis]
Length = 511
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/520 (71%), Positives = 415/520 (79%), Gaps = 25/520 (4%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
MKCPYC AAQ RCAT+++GRSI EC SCGRV+ ERQ Q +H+FH RAQD PL LVTSDLP
Sbjct: 1 MKCPYCPAAQARCATSTSGRSILECTSCGRVVEERQFQQYHVFHNRAQDNPLSLVTSDLP 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS 120
I QPQ +G DEDPF+PTGFIT FS WSL P+PL LRSS SFSG LAELERT EL +S+
Sbjct: 61 II-QPQ-GEGDDEDPFEPTGFITVFSTWSLEPNPLSLRSSLSFSGHLAELERTLELTASA 118
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
+ S SS+V++DNLRAY+QIIDVASILGLD DI DHAFQLFRDCCSATCLRNRSVEALATA
Sbjct: 119 SNSNSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATA 178
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI+VHMPRFCT
Sbjct: 179 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCT 238
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
LLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL
Sbjct: 239 LLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 298
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTS--VD 358
TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTT ITSGR+ +VD EVTS VD
Sbjct: 299 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTVITSGRSSAPRVDPVEVTSPPVD 358
Query: 359 KDKQPETKSIKVNEVI-----ETESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNIRT 413
KDKQP+ KS K N V+ + ESNG ++ G+ P + F QPWL F AS + T
Sbjct: 359 KDKQPDNKSNKTNNVLARAKEDIESNG---NSRGSRGPAWQN---FRQPWLQFGASGVTT 412
Query: 414 TGEKNQIVVQGDINEVQPGHQDLDQKLDEDT--KPATTTLRPSQFPCTPVSTVT--SLTW 469
+GEKN + G NE+Q Q+ ++K+D+ K T RP+QF P S ++ S+TW
Sbjct: 413 SGEKN---LNG--NELQGSCQEFEEKVDKQIIEKELTGASRPNQFSNPPASGMSTISITW 467
Query: 470 PFRPPPSMATASFQVVDPPKLQPGHIELKGSGVQAGSKND 509
PFR P+ + V PPKL PG+ ELKG +Q GS N+
Sbjct: 468 PFRSAPASGPSPI-VQPPPKLAPGYAELKGISIQNGSSNN 506
>gi|225430796|ref|XP_002267728.1| PREDICTED: uncharacterized protein LOC100256546 [Vitis vinifera]
Length = 540
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/536 (68%), Positives = 411/536 (76%), Gaps = 29/536 (5%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
M+CPYC+AAQGRC TT +GR +TEC SCGRV+ ERQ Q HHLFH+RAQDTPLCLVTSDLP
Sbjct: 1 MRCPYCTAAQGRCGTTGSGRLVTECTSCGRVMEERQSQIHHLFHLRAQDTPLCLVTSDLP 60
Query: 61 SIPQPQQNDGVD--EDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLS 118
P Q + +DPF+ TGFI+AFS WSL P P+F RS SFSG LAELER E S
Sbjct: 61 PPPPQQAQTAQEQEDDPFESTGFISAFSTWSLDPCPIFARSCLSFSGHLAELERVLESSS 120
Query: 119 SSTTSTSS----------------SVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRD 162
SS++S+SS +V++DNLRAYLQIIDVASILGLDYDI DHAF+LFRD
Sbjct: 121 SSSSSSSSSAAAAASSSSLASSGPAVVVDNLRAYLQIIDVASILGLDYDIADHAFELFRD 180
Query: 163 CCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL 222
C SATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL
Sbjct: 181 CSSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL 240
Query: 223 SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLAC 282
SQPINSNSI+VHMPRFCTLLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLAC
Sbjct: 241 SQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLAC 300
Query: 283 QLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSG 342
QLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTT ITSG
Sbjct: 301 QLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTAITSG 360
Query: 343 RAPTVKVDSGEVTS-VDKDKQPETKSIKVNEVIET-------ESNGPNADADGAHAPTLK 394
R+ +VD E+ S +D+DKQPE+K K NE +ET E + GAH L
Sbjct: 361 RSSAPRVDLIEIVSCLDRDKQPESKPSKPNETLETSHQARGKEDTECKGNCQGAHTLGLN 420
Query: 395 RPSPFSQPWLHFAASNIRTTGEKNQIVVQG-DINEVQPGHQDLDQKLDEDTKPATTTLRP 453
RP+ F Q F S RT+GEKNQIV G D+NE Q+L+QKLD K AT ++R
Sbjct: 421 RPTTFWQLPNPFGGSGFRTSGEKNQIVSGGMDLNEGGANPQELEQKLDNGAKAATVSVRA 480
Query: 454 SQFPCTPVSTVTSLTWPFRPPPSMATASF--QVVDPPKLQPGHIELKGSGVQAGSK 507
QFP P S+ +S+TWPFR PPS ++S Q++ K+ G ELKGSG + G +
Sbjct: 481 EQFPGAPPSSGSSITWPFRQPPSSGSSSSYAQLMQSLKVASGFPELKGSGRKGGGQ 536
>gi|297798234|ref|XP_002867001.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297312837|gb|EFH43260.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 506
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 349/521 (66%), Positives = 402/521 (77%), Gaps = 37/521 (7%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
MKCPYCS+ QGRCATTS+GRSITEC SCGRV+ ERQ QNHHLFH+RAQDTPLCLVTSDL
Sbjct: 1 MKCPYCSSTQGRCATTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS 120
+ QP D +EDPF+PTGFITAFS WSL PSP+F RSS SFSG LAELERT EL SS+
Sbjct: 61 TATQPSLED--EEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTLELASST 118
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
+ S SS+V++DNLRAY+QIIDVASILGLD DI +HAFQLFRDCCSATCLRNRSVEALATA
Sbjct: 119 SNSNSSTVVVDNLRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATA 178
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
LVQAIREAQEPRTLQEISIAANV QKEIGKYIKILGEALQLSQPINSNSI+VHMPRFCT
Sbjct: 179 CLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCT 238
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
LLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK+TGL
Sbjct: 239 LLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGL 298
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVK-VDSGEVTSVDK 359
TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTI++ R+ T + D E + VD+
Sbjct: 299 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTISTTRSTTPRAADPPEPSFVDR 358
Query: 360 DKQPETKSIKVNEVIETESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNIRTTGEKNQ 419
DK S+K E + P D K+P F QPWL F +++ GE
Sbjct: 359 DK----PSVKPIETSDHTYQQPKGKED-------KQPK-FRQPWL-FGTASVMNPGEM-- 403
Query: 420 IVVQGDINE-VQPGHQDLDQKL--------DEDTKPATTTLRPSQFPC--TPVSTVTSLT 468
I+E +P + D +++ D++T P + +QFP +P + ++++
Sbjct: 404 ------ISEPAKPNNMDYEKQQLDKQQQLGDKETLPIYLR-QHNQFPSNPSPSTGISTIN 456
Query: 469 WPFR-PPPSMATASFQVVDPPKLQPGHIELKGSGVQAGSKN 508
W FR ++++ VV PPKL PG+ E++GSG Q GS+N
Sbjct: 457 WSFRPSGSPGSSSNLPVVHPPKLPPGYAEIRGSGSQTGSRN 497
>gi|356538170|ref|XP_003537577.1| PREDICTED: uncharacterized protein LOC100815371 [Glycine max]
Length = 488
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 342/490 (69%), Positives = 384/490 (78%), Gaps = 23/490 (4%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
MKCPYCSAAQGRCATTS GRSITEC SCGRV+ ERQ HH+FH+RAQD PLCLVTSDL
Sbjct: 1 MKCPYCSAAQGRCATTSGGRSITECTSCGRVVEERQSHPHHVFHVRAQDNPLCLVTSDL- 59
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS 120
++P QN+ +EDPF+PTGFITAFS W+L P+PL+L+SS SFSG LAELERT E SSS
Sbjct: 60 ALPALNQNND-EEDPFEPTGFITAFSTWALEPNPLYLQSSLSFSGYLAELERTLESSSSS 118
Query: 121 TTSTSSS------VMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSV 174
++S +SS V++DNLRAY+QIIDVASILGLD DI DHAFQLFRDCCSATCLRNRSV
Sbjct: 119 SSSFTSSSSSSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSV 178
Query: 175 EALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH 234
EALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI+VH
Sbjct: 179 EALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVH 238
Query: 235 MPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 294
MPRFCTLLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI
Sbjct: 239 MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 298
Query: 295 CKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEV 354
CKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPE+AFPTT I SGR+ T KVD+ EV
Sbjct: 299 CKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSSTAKVDAVEV 358
Query: 355 -TSVDKDKQPETKSIKVNE--VIETESNGPNADADGAHA--PTLKRPSPFSQPWLHFAAS 409
+S+D +K P+ K K NE + G + G HA TL + S F Q L
Sbjct: 359 ISSLDPEKLPDIKHSKPNEGPGMVHHPRGKDEAVGGYHASHSTLNQQSTFWQSQLPSGTH 418
Query: 410 NIRTTGEKNQIVVQG-DINEVQPGHQDLDQKLDEDTKPAT--TTLRPSQFPCTPVSTVTS 466
N +Q V+QG DI+ Q HQ + ++ T A ++L+ +Q P S+ +S
Sbjct: 419 N-------HQNVLQGMDIDVSQRNHQQPEHMAEDTTNGAANGSSLKSNQLCSPPASSASS 471
Query: 467 LTWPFRPPPS 476
+ F PPS
Sbjct: 472 VMRQFSAPPS 481
>gi|449451663|ref|XP_004143581.1| PREDICTED: transcription initiation factor IIB-like [Cucumis
sativus]
Length = 443
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 319/426 (74%), Positives = 348/426 (81%), Gaps = 8/426 (1%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
MKCPYCSAAQGRC T+STG+SITEC SCGRV+ ERQ Q HHLFH+RAQD PLCLVTSDLP
Sbjct: 1 MKCPYCSAAQGRCVTSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS 120
+ P QND V DPF+PTGFITAFS WSL +PLF RS SFSG LAELERT E SSS
Sbjct: 61 TPPVHHQNDQV-LDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERTLESTSSS 119
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
+SS+V++DNLRAY+QIIDVAS+LGLDY I +HAF+LFRDCCSATCLRNRSVEALATA
Sbjct: 120 NLPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATA 179
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI+VHMPRFCT
Sbjct: 180 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCT 239
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
LLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL
Sbjct: 240 LLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 299
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDKD 360
TEVTLRKVYKELLENWDDLLPSNYTPAVPPE+AFPTT I SGR+ K+D+ E S++KD
Sbjct: 300 TEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKIDAFEGASLEKD 359
Query: 361 KQPETKSIKVNEVIET-------ESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNIRT 413
K ETK E+ E E + + G + P + S FSQP S
Sbjct: 360 KPIETKPNISTEISEMSHPSRVKEDSESKFVSHGMYNPVTNKSSTFSQPHPPKGNSVAGF 419
Query: 414 TGEKNQ 419
G+K+Q
Sbjct: 420 VGKKSQ 425
>gi|449504920|ref|XP_004162331.1| PREDICTED: transcription initiation factor IIB-like [Cucumis
sativus]
Length = 443
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 314/408 (76%), Positives = 341/408 (83%), Gaps = 8/408 (1%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
MKCPYCSAAQGRC T+STG+SITEC SCGRV+ ERQ Q HHLFH+RAQD PLCLVTSDLP
Sbjct: 1 MKCPYCSAAQGRCVTSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLP 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS 120
+ P QND V DPF+PTGFITAFS WSL +PLF RS SFSG LAELERT E SSS
Sbjct: 61 TPPVHHQNDQV-LDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERTLESTSSS 119
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
+SS+V++DNLRAY+QIIDVAS+LGLDY I +HAF+LFRDCCSATCLRNRSVEALATA
Sbjct: 120 NLPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATA 179
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI+VHMPRFCT
Sbjct: 180 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCT 239
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
LLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL
Sbjct: 240 LLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 299
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDKD 360
TEVTLRKVYKELLENWDDLLPSNYTPAVPPE+AFPTT I SGR+ K+D+ E S++KD
Sbjct: 300 TEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKIDAFEGASLEKD 359
Query: 361 KQPETKSIKVNEVIET-------ESNGPNADADGAHAPTLKRPSPFSQ 401
K ETK E+ E E + + G + P + S FSQ
Sbjct: 360 KPIETKPNISTEISEMSHPSRVKEDSESKFVSRGMYNPVTNKSSTFSQ 407
>gi|338762839|gb|AEI98626.1| hypothetical protein 111O18.13 [Coffea canephora]
Length = 526
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 337/513 (65%), Positives = 381/513 (74%), Gaps = 37/513 (7%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
M+CPYCSAAQGRC TTS+GRSITEC SCGRV+ ERQ Q+HHLFHIRAQD+PLCLVTSDLP
Sbjct: 1 MRCPYCSAAQGRCTTTSSGRSITECTSCGRVVEERQSQSHHLFHIRAQDSPLCLVTSDLP 60
Query: 61 SIPQPQQNDGV------DEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTF 114
++P P D D+DPF+PTGFITAFS WSL P PLF +SS SF+G LAELER
Sbjct: 61 TLPVPATTDSNPTSNSDDDDPFEPTGFITAFSTWSLEPYPLFAQSSISFAGHLAELERVL 120
Query: 115 E--------LLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSA 166
E SS + S+ SV++DNLRAYLQIIDVASILGLDYDI DHAFQLFRDC SA
Sbjct: 121 ETTSSSSSCSSSSGSNSSGPSVVVDNLRAYLQIIDVASILGLDYDISDHAFQLFRDCSSA 180
Query: 167 TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPI 226
TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAAN+PQKEIGKYIKILGEALQLSQPI
Sbjct: 181 TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPI 240
Query: 227 NSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLED 286
NSNSI+VHMPRFCTLLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLACQLED
Sbjct: 241 NSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLED 300
Query: 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPT 346
KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNY+P VPPEKAFP TI SGR+ T
Sbjct: 301 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYSPVVPPEKAFPMATIASGRSST 360
Query: 347 VKVDSGEVTSVDKDKQPETKSIKVNEVIETESNGPNADA----DGAHA----PTLKRPSP 398
+ D EV S DKQ E+K+ + ++V++T N + D H P + P
Sbjct: 361 PRADLVEVPS--SDKQTESKNPRTSDVLDTCHVAKNKEETENRDSIHRSQSLPMHRTPIL 418
Query: 399 F-SQPWLHFAASNIRTTGEK-NQIVVQGDINEVQPGHQDLDQKLDEDTKPATTTLRPSQF 456
+ SQP + A N T +K + I + DI D + D K +++RP F
Sbjct: 419 WKSQPPVRSATVN--TPADKIHNITQEMDI--------DPRSQTGSDEKVVASSMRPVLF 468
Query: 457 PCTPVSTVTSLTWPFRPPPSMATASFQVVDPPK 489
P S+ SL+WP + S + S Q + P+
Sbjct: 469 -SAPTSSAGSLSWPLQTTSSGFSPSGQQLVHPR 500
>gi|15234473|ref|NP_195383.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|2464915|emb|CAB16810.1| transcription initiation factor like protein [Arabidopsis thaliana]
gi|7270613|emb|CAB80331.1| transcription initiation factor like protein [Arabidopsis thaliana]
gi|16509378|emb|CAC82714.1| TFIIB-related protein [Arabidopsis thaliana]
gi|30102720|gb|AAP21278.1| At4g37010 [Arabidopsis thaliana]
gi|39545884|gb|AAR28005.1| TFIIB5/pBrp [Arabidopsis thaliana]
gi|332661282|gb|AEE86682.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
Length = 503
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 343/506 (67%), Positives = 388/506 (76%), Gaps = 19/506 (3%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
MKCPYCS+AQGRC TTS+GRSITEC SCGRV+ ERQ QNHHLFH+RAQDTPLCLVTSDL
Sbjct: 1 MKCPYCSSAQGRCTTTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS 120
+ QP D +EDPF+PTGFITAFS WSL PSP+F RSS SFSG LAELERT EL SS+
Sbjct: 61 TAAQPSPED--EEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTLELASST 118
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
+ S SS+V++DNLRAY+QIIDVASILGLD DI +HAFQLFRDCCSATCLRNRSVEALATA
Sbjct: 119 SNSNSSTVVVDNLRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATA 178
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
LVQAIREAQEPRTLQEISIAANV QKEIGKYIKILGEALQLSQPINSNSI+VHMPRFCT
Sbjct: 179 CLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCT 238
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
LLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK+TGL
Sbjct: 239 LLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGL 298
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVK-VDSGEVTSVDK 359
TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTI++ R+ T + VD E + V+K
Sbjct: 299 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTISTTRSTTPRAVDPPEPSFVEK 358
Query: 360 DKQPETKSIKVNEVIETESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNIRTTGEKNQ 419
DK P K I E + P D K+P F QPWL AS + ++
Sbjct: 359 DK-PSAKPI---ETFDHTYQQPKGKED-------KQPK-FRQPWLFGTASVMNPAEMISE 406
Query: 420 IVVQGDINEVQPGHQDLDQKLDEDTKPATTTLRPSQ-FPC--TPVSTVTSLTWPFRPPPS 476
++ + Q+ D + LR FP +P + ++++ W FRP
Sbjct: 407 PAKPNAMDYEKQQLDKQQQQQLGDKETLPIYLRDHNPFPSNPSPSTGISTINWSFRPSVV 466
Query: 477 MATAS-FQVVDPPKLQPGHIELKGSG 501
++S V+ PPKL PG+ E++GSG
Sbjct: 467 PGSSSNLPVIHPPKLPPGYAEIRGSG 492
>gi|357483371|ref|XP_003611972.1| Transcription initiation factor IIB [Medicago truncatula]
gi|358344389|ref|XP_003636272.1| Transcription initiation factor IIB [Medicago truncatula]
gi|355502207|gb|AES83410.1| Transcription initiation factor IIB [Medicago truncatula]
gi|355513307|gb|AES94930.1| Transcription initiation factor IIB [Medicago truncatula]
gi|388496684|gb|AFK36408.1| unknown [Medicago truncatula]
Length = 487
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 322/437 (73%), Positives = 356/437 (81%), Gaps = 17/437 (3%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
MKCPYCSAAQGRC TT+TG+SITEC SCGRV+ ERQ HH+FH+RAQD PLCLVT DLP
Sbjct: 1 MKCPYCSAAQGRCTTTTTGKSITECTSCGRVVEERQSHPHHIFHLRAQDNPLCLVTPDLP 60
Query: 61 --SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLS 118
++ Q + +EDPF+PTGFITAFS WSL PSPL+L+SS SFSG LAELERT E
Sbjct: 61 PPTLNQTNTDTNEEEDPFEPTGFITAFSTWSLEPSPLYLQSSLSFSGYLAELERTLE--- 117
Query: 119 SSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALA 178
SS+T++SSSV++DNLRAY+QIIDV+SILGL+ DI DHAFQLFRDCCSATCLRNRSVEALA
Sbjct: 118 SSSTNSSSSVVVDNLRAYMQIIDVSSILGLESDISDHAFQLFRDCCSATCLRNRSVEALA 177
Query: 179 TAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRF 238
TAALVQAIREAQEPRTLQEISIAANV QKEIGKYIKILGEALQLSQPINSNSI+VHMPRF
Sbjct: 178 TAALVQAIREAQEPRTLQEISIAANVAQKEIGKYIKILGEALQLSQPINSNSISVHMPRF 237
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
CTLLQLNKSAQ LATHIG+VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT
Sbjct: 238 CTLLQLNKSAQELATHIGDVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 297
Query: 299 GLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVT-SV 357
GLTEVTLRKVYKELLENWDDLLPSNYTPAVPPE+AFPTT I SGR+ T KVD+ EVT S+
Sbjct: 298 GLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTLIASGRSSTTKVDAIEVTSSL 357
Query: 358 DKDKQPETKSIKVNEVIETESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNIRTTGEK 417
D + PE K K NE E +SN A T + S F Q L A N +
Sbjct: 358 DSENLPEFKPNKANEA-EGKSNA------RASQSTAIQQSTFWQSQLPSATQN----HQN 406
Query: 418 NQIVVQGDINEVQPGHQ 434
++ DI+ +Q HQ
Sbjct: 407 PNVLESMDIDGLQRNHQ 423
>gi|9858771|gb|AAG01118.1|AF273333_3 BAC19.3 [Solanum lycopersicum]
Length = 425
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 298/420 (70%), Positives = 345/420 (82%), Gaps = 6/420 (1%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
M+CPYCSA QGRC ++++GR ITEC SCGRV+ ER Q+HHLFH RAQD+PLCL TSDLP
Sbjct: 1 MRCPYCSAEQGRCTSSTSGRPITECTSCGRVVEERLTQSHHLFHTRAQDSPLCLATSDLP 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS 120
++P ND DEDPF+PTGFIT FS WSL P P+F +SS SF+G LAELER E+ S+S
Sbjct: 61 TLPISATND--DEDPFEPTGFITTFSTWSLEPYPVFAQSSISFAGHLAELERVLEMTSTS 118
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
++S+SSSV+++NLRAYLQIIDVASIL LD DI DHAFQLFRDC SATCLRNRSVEALATA
Sbjct: 119 SSSSSSSVVVENLRAYLQIIDVASILRLDSDISDHAFQLFRDCSSATCLRNRSVEALATA 178
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
ALV AIREAQEPRTLQEIS+AAN+PQKEIGKYIKILGEALQLSQPINSNSI+VHMPRFCT
Sbjct: 179 ALVHAIREAQEPRTLQEISVAANLPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCT 238
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
LLQLNKSAQ LATHIGEV+INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL
Sbjct: 239 LLQLNKSAQELATHIGEVIINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 298
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDKD 360
TEVTLRKVYKELLENWDDLLPS+Y P VPPEKAFP+ TI +GR+ T +VD E TS ++D
Sbjct: 299 TEVTLRKVYKELLENWDDLLPSSYKPVVPPEKAFPSATIATGRSSTPRVDIVEGTSSERD 358
Query: 361 KQPE-TKSIKVNEVIETESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNIRTTGEKNQ 419
K + S+ ++ I + + + D + L P PF +P A +++ +K+Q
Sbjct: 359 KPVKPVDSLDISPQIRGKEDSDS--KDNINTTQLSWPPPFWKPQAP-AEGGVKSATDKSQ 415
>gi|156070767|gb|ABU45181.1| unknown [Capsicum frutescens]
Length = 426
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 302/432 (69%), Positives = 350/432 (81%), Gaps = 9/432 (2%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
M+CPYCSA Q RCAT+++GR ITEC SCGRV+ ER Q+HHLFH RAQD+PLCL TSDLP
Sbjct: 1 MRCPYCSAEQARCATSTSGRPITECTSCGRVVEERLTQSHHLFHTRAQDSPLCLATSDLP 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS 120
++P +D D+DPF+PTGFITAFS WSL P P+F +SS SF+G LAELER E SSS
Sbjct: 61 TLPISATHD--DDDPFEPTGFITAFSTWSLEPYPVFAQSSISFAGHLAELERVLETTSSS 118
Query: 121 TTSTSSSVMM-DNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALAT 179
++S++SS ++ +NLRAYLQIIDVASIL LDYDI DHAFQLFRDC SATCLRNRSVEALAT
Sbjct: 119 SSSSTSSSVVVENLRAYLQIIDVASILRLDYDISDHAFQLFRDCSSATCLRNRSVEALAT 178
Query: 180 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFC 239
AALV AIREAQEPRTLQEIS+AAN+PQKEIGKYIKILGEALQLSQPINSNSI+VHMPRFC
Sbjct: 179 AALVHAIREAQEPRTLQEISVAANLPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 238
Query: 240 TLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 299
TLLQLNKSAQ LATHIGEV+INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG
Sbjct: 239 TLLQLNKSAQELATHIGEVIINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 298
Query: 300 LTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDK 359
LTEVTLRKVYKELLENWDDLLPS+Y P VPP+KAFP+ I +GR+ T++VD E TS ++
Sbjct: 299 LTEVTLRKVYKELLENWDDLLPSSYKPVVPPDKAFPSAAIPTGRSSTLRVDLVEGTSSER 358
Query: 360 DKQPE-TKSIKVNEVIETESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNIRTTGEKN 418
DK + S+ + I ++ + + D D + P+PF +P A + T EK+
Sbjct: 359 DKPVKPVDSLDASPQIRSKEDSHSKDNDTTQ---ISWPTPFWKPQAP-AEGGVTTATEKS 414
Query: 419 QIVVQG-DINEV 429
Q Q DI+ V
Sbjct: 415 QNATQEMDIDYV 426
>gi|222820576|gb|ACM67638.1| transcription factor IIB [Capsicum annuum]
Length = 426
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 301/432 (69%), Positives = 349/432 (80%), Gaps = 9/432 (2%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
M+CPYCSA Q RCAT+++GR ITEC SCGRV+ ER Q+HHLFH RAQD+PLCL TSDLP
Sbjct: 1 MRCPYCSAEQARCATSTSGRPITECTSCGRVVEERLTQSHHLFHTRAQDSPLCLATSDLP 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS 120
++P +D D+DPF+P GFITAFS WSL P P+F +SS SF+G LAELER E SSS
Sbjct: 61 TLPISATHD--DDDPFEPPGFITAFSTWSLEPYPVFAQSSISFAGHLAELERVLETTSSS 118
Query: 121 TTSTSSSVMM-DNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALAT 179
++S++SS ++ +NLRAYLQIIDVASIL LDYDI DHAFQLFRDC SATCLRNRSVEALAT
Sbjct: 119 SSSSTSSSVVVENLRAYLQIIDVASILRLDYDISDHAFQLFRDCSSATCLRNRSVEALAT 178
Query: 180 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFC 239
AALV AIREAQEPRTLQEIS+AAN+PQKEIGKYIKILGEALQLSQPINSNSI+VHMPRFC
Sbjct: 179 AALVHAIREAQEPRTLQEISVAANLPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 238
Query: 240 TLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 299
TLLQLNKSAQ LATHIGEV+INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG
Sbjct: 239 TLLQLNKSAQELATHIGEVIINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 298
Query: 300 LTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDK 359
LTEVTLRKVYKELLENWDDLLPS+Y P VPP+KAFP+ I +GR+ T++VD E TS ++
Sbjct: 299 LTEVTLRKVYKELLENWDDLLPSSYKPVVPPDKAFPSAAIPTGRSSTLRVDLVEGTSSER 358
Query: 360 DKQPE-TKSIKVNEVIETESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNIRTTGEKN 418
DK + S+ + I ++ + + D D + P+PF +P A + T EK+
Sbjct: 359 DKPVKPVDSLDASPQIRSKEDSHSKDNDTTQ---ISWPTPFWKPQAP-AEGGVTTATEKS 414
Query: 419 QIVVQG-DINEV 429
Q Q DI+ V
Sbjct: 415 QNATQEMDIDYV 426
>gi|16516651|emb|CAC82715.1| TFIIB-related protein [Spinacia oleracea]
Length = 414
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 289/409 (70%), Positives = 329/409 (80%), Gaps = 12/409 (2%)
Query: 9 AQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQN 68
+ GRC TT TGR ITEC SCGRVI ERQ Q HH+FH++ QD+PL L+++ + PQ
Sbjct: 1 SNGRCTTTPTGRHITECTSCGRVIEERQTQTHHIFHLQGQDSPL-LLSTSDLLLSPPQPP 59
Query: 69 DGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSV 128
EDPF TGFITAFS WSL SPLF SS SFSG LAELER E S +++S+SS V
Sbjct: 60 SPDPEDPFDHTGFITAFSTWSLRHSPLFATSSLSFSGHLAELERALEGTSVNSSSSSSGV 119
Query: 129 MMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIRE 188
++DNLRAYLQI+DVASILGLD DI DHAFQLFRDC SATCLRNRSVEALATA LVQAIRE
Sbjct: 120 VVDNLRAYLQIVDVASILGLDRDISDHAFQLFRDCSSATCLRNRSVEALATACLVQAIRE 179
Query: 189 AQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSA 248
AQEPRTLQEISIAAN+PQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFC LLQLNKSA
Sbjct: 180 AQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCNLLQLNKSA 239
Query: 249 QVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV 308
Q LATHIGEVV+NKCFCTRRNPISISAAAIYLACQLED+RKTQAEICKVTGLTEVTLRKV
Sbjct: 240 QELATHIGEVVMNKCFCTRRNPISISAAAIYLACQLEDRRKTQAEICKVTGLTEVTLRKV 299
Query: 309 YKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTSVDKD-KQPETKS 367
YKELLENWDDLLPSNYTP VPPEKAFPTTTI SGR+ T + + E+ ++D++ KQP+T
Sbjct: 300 YKELLENWDDLLPSNYTPVVPPEKAFPTTTIASGRSVTPRAEPPEIPTLDRESKQPKTNQ 359
Query: 368 I----KVNEVI-ETESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNI 411
I V+ V E +SN P+ + P R +P+++ + F ++ +
Sbjct: 360 ISETTHVDRVKGENDSNTPSTKK--VYTP---RIAPYARNLMWFVSNGL 403
>gi|240256193|ref|NP_001078502.4| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|332661283|gb|AEE86683.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
Length = 369
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 266/328 (81%), Positives = 286/328 (87%), Gaps = 14/328 (4%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
MKCPYCS+AQGRC TTS+GRSITEC SCGRV+ ERQ QNHHLFH+RAQDTPLCLVTSDL
Sbjct: 1 MKCPYCSSAQGRCTTTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS 120
+ QP D +EDPF+PTGFITAFS WSL PSP+F RSS SFSG LAELERT EL SS+
Sbjct: 61 TAAQPSPED--EEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTLELASST 118
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
+ S SS+V++DNLRAY+QIIDVASILGLD DI +HAFQLFRDCCSATCLRNRSVEALATA
Sbjct: 119 SNSNSSTVVVDNLRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATA 178
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
LVQAIREAQEPRTLQEISIAANV QKEIGKYIKILGEALQLSQPINSNSI+VHMPRFCT
Sbjct: 179 CLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCT 238
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
LLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK+TGL
Sbjct: 239 LLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGL 298
Query: 301 TEVTLRKVY---------KELLENWDDL 319
TE RK + ++LLE W L
Sbjct: 299 TE---RKHFPQPQSPQPAQQLLEPWIHL 323
>gi|224094741|ref|XP_002310216.1| predicted protein [Populus trichocarpa]
gi|222853119|gb|EEE90666.1| predicted protein [Populus trichocarpa]
Length = 278
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/273 (90%), Positives = 260/273 (95%), Gaps = 1/273 (0%)
Query: 72 DEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMD 131
+EDPF+PTGFIT+FS WSL P+P+ LRSS SFSG LAELERT EL S+ST ++SS+V++D
Sbjct: 3 EEDPFEPTGFITSFSTWSLEPNPVSLRSSLSFSGHLAELERTIEL-SASTPASSSNVVVD 61
Query: 132 NLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQE 191
NLRAY+QIIDVASILGLD DI DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQE
Sbjct: 62 NLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQE 121
Query: 192 PRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVL 251
PRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI+VHMPRFCTLLQLNKSAQ L
Sbjct: 122 PRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQEL 181
Query: 252 ATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 311
ATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE
Sbjct: 182 ATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 241
Query: 312 LLENWDDLLPSNYTPAVPPEKAFPTTTITSGRA 344
LLENW DLLP NYTPAVPPEKAFPTTTITSGR+
Sbjct: 242 LLENWGDLLPKNYTPAVPPEKAFPTTTITSGRS 274
>gi|357113595|ref|XP_003558588.1| PREDICTED: uncharacterized protein LOC100835667 [Brachypodium
distachyon]
Length = 523
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/379 (65%), Positives = 300/379 (79%), Gaps = 9/379 (2%)
Query: 2 KCPYCSAAQ-GRCATTS--TGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSD 58
+CPYC A+ RCATT R+++EC +C R++ ER H F + PL LVT+D
Sbjct: 6 QCPYCRASGPARCATTQPPLSRAVSECTACARLVLERHLHTHPFFPLVPSIHPLPLVTAD 65
Query: 59 LPSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLS 118
LP+ P ND D+DPF P GF++AFSA+SL P+ RS+ +FSG LAELER + S
Sbjct: 66 LPTPSSPSTND--DDDPFLPAGFVSAFSAFSLERHPVLARSASAFSGHLAELERALAVDS 123
Query: 119 SSTTSTSSS---VMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVE 175
++++ S V +++LRAYLQI+DVASIL LD DI DHAF+LF++C +ATCLRNRSVE
Sbjct: 124 PASSTPDPSGPMVSVESLRAYLQIVDVASILRLDRDIADHAFELFKECSTATCLRNRSVE 183
Query: 176 ALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHM 235
ALATAALVQAIREAQEPRTLQEIS A+N+PQKEIGKYIKILGE+L+LSQP+NSNSIAVHM
Sbjct: 184 ALATAALVQAIREAQEPRTLQEISTASNLPQKEIGKYIKILGESLKLSQPLNSNSIAVHM 243
Query: 236 PRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC 295
PRFC LLQLNKSAQ LA HIGEVV+NKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC
Sbjct: 244 PRFCNLLQLNKSAQELAAHIGEVVVNKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC 303
Query: 296 KVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVT 355
KVTGLTEVTLRKVYKELLENWDDLLP +YTPA PPEKAFP TTI S R+ + K D +
Sbjct: 304 KVTGLTEVTLRKVYKELLENWDDLLPPDYTPATPPEKAFPMTTIFSARSSSGK-DLYQDK 362
Query: 356 SVDKDKQPETKSIKVNEVI 374
+D KQ +++++++ ++
Sbjct: 363 LLDSIKQKSSETVELDHMV 381
>gi|413956706|gb|AFW89355.1| TFIIB protein [Zea mays]
Length = 583
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/358 (68%), Positives = 282/358 (78%), Gaps = 11/358 (3%)
Query: 2 KCPYCSAAQ-GRCATTS--TGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSD 58
+CPYC A+ RCATT R+++EC +C R++ ER H F + PL LVT D
Sbjct: 56 QCPYCRASGPARCATTQPPLSRAVSECSACARIVLERHLHTHPFFPLLPSLHPLPLVTPD 115
Query: 59 LPSI----PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTF 114
L + P P D DEDPF P GF++AFSA+SL P+ RS+ +FSG LAELER
Sbjct: 116 LATAIDPAPSPSPGDEDDEDPFLPAGFVSAFSAFSLERHPVLARSASTFSGHLAELERAL 175
Query: 115 ELLSSSTTST----SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLR 170
+ S++ S V +D+LRAYLQI+DVASIL LD DI DHAF+LF+DC SATCLR
Sbjct: 176 AVDSATAASNPDPAGPMVSVDSLRAYLQIVDVASILRLDRDIADHAFELFKDCSSATCLR 235
Query: 171 NRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNS 230
NRSVEALATAALVQAIREAQ+PRTLQEIS A+N+PQKEIGKYIKILGE+L+LSQP+NSNS
Sbjct: 236 NRSVEALATAALVQAIREAQQPRTLQEISTASNLPQKEIGKYIKILGESLKLSQPLNSNS 295
Query: 231 IAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKT 290
IAVHMPRFC+LLQLNKSAQ LA HIGEVV+NKCFCTRRNPISISAAAIYLACQLEDKRKT
Sbjct: 296 IAVHMPRFCSLLQLNKSAQELAAHIGEVVVNKCFCTRRNPISISAAAIYLACQLEDKRKT 355
Query: 291 QAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVK 348
QAEICKVTGLTEVTLRKVYKELLENWDDLLP +YTPA PPEKAFP T I SGR+ + K
Sbjct: 356 QAEICKVTGLTEVTLRKVYKELLENWDDLLPPDYTPATPPEKAFPMTNIYSGRSASGK 413
>gi|297735177|emb|CBI17539.3| unnamed protein product [Vitis vinifera]
Length = 321
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/314 (79%), Positives = 271/314 (86%), Gaps = 9/314 (2%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
M+CPYC+AAQGRC TT +GR +TEC SCGRV+ ERQ Q HHLFH+RAQDTPLCLVTSDLP
Sbjct: 1 MRCPYCTAAQGRCGTTGSGRLVTECTSCGRVMEERQSQIHHLFHLRAQDTPLCLVTSDLP 60
Query: 61 SIPQPQQNDGVD--EDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLS 118
P Q + +DPF+ TGFI+AFS WSL P P+F RS SFSG LAELE + S
Sbjct: 61 PPPPQQAQTAQEQEDDPFESTGFISAFSTWSLDPCPIFARSCLSFSGHLAELEPS----S 116
Query: 119 SSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALA 178
SS S+ +V++DNLRAYLQIIDVASILGLDYDI DHAF+LFRDC SATCLRNRSVEALA
Sbjct: 117 SSLASSGPAVVVDNLRAYLQIIDVASILGLDYDIADHAFELFRDCSSATCLRNRSVEALA 176
Query: 179 TAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRF 238
TAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI+VHMPRF
Sbjct: 177 TAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRF 236
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
CTLLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT
Sbjct: 237 CTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 296
Query: 299 GLTEVTLRKVYKEL 312
GLTE RK + +L
Sbjct: 297 GLTE---RKHFPQL 307
>gi|242036607|ref|XP_002465698.1| hypothetical protein SORBIDRAFT_01g044030 [Sorghum bicolor]
gi|241919552|gb|EER92696.1| hypothetical protein SORBIDRAFT_01g044030 [Sorghum bicolor]
Length = 533
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/359 (68%), Positives = 284/359 (79%), Gaps = 12/359 (3%)
Query: 2 KCPYCSAAQG-RCATTS--TGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSD 58
+CPYC A+ RCATT R+++EC +C R++ ER H F + PL LVT D
Sbjct: 4 QCPYCRASGPVRCATTQPPLSRAVSECSACARIVVERHLHTHPFFPLLPSLHPLPLVTPD 63
Query: 59 LPSI----PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTF 114
L + P P D DEDPF P GF++AFSA+SL P+ RS+ +FSG LAELER
Sbjct: 64 LATAVDPAPSPSPGDEDDEDPFLPAGFVSAFSAFSLERHPVLARSASTFSGLLAELERAL 123
Query: 115 ELLSSSTTSTSSS-----VMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCL 169
+ S++ +++ V +D+LRAYLQI+DVASIL LD DI DHAF+LF+DC SATCL
Sbjct: 124 AVDSAAAAASNPDPAGPMVSVDSLRAYLQIVDVASILRLDRDIADHAFELFKDCSSATCL 183
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
RNRSVEALATAALVQAIREAQ+PRTLQEIS A+N+PQKEIGKYIKILGE+L+LSQP+NSN
Sbjct: 184 RNRSVEALATAALVQAIREAQQPRTLQEISTASNLPQKEIGKYIKILGESLKLSQPLNSN 243
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
SIAVHMPRFC+LLQLNKSAQ LA HIGEVV+NKCFCTRRNPISISAAAIYLACQLEDKRK
Sbjct: 244 SIAVHMPRFCSLLQLNKSAQELAAHIGEVVVNKCFCTRRNPISISAAAIYLACQLEDKRK 303
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVK 348
TQAEICKVTGLTEVTLRKVYKELLENWDDLLP +YTPA PPEKAFP T I SGR+ + K
Sbjct: 304 TQAEICKVTGLTEVTLRKVYKELLENWDDLLPPDYTPATPPEKAFPMTNIYSGRSASGK 362
>gi|125542764|gb|EAY88903.1| hypothetical protein OsI_10382 [Oryza sativa Indica Group]
Length = 529
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 251/387 (64%), Positives = 294/387 (75%), Gaps = 20/387 (5%)
Query: 2 KCPYCSAAQ-GRCATTS--TGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSD 58
+CPYC A+ RC TT R+++EC SC R++ ER H F + PL LVT D
Sbjct: 6 QCPYCRASGPARCVTTQPPLSRAVSECSSCARLVLERHLHTHPFFPLLPSLHPLPLVTPD 65
Query: 59 LP-------SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELE 111
L D D+DPF P GF++AFSA+SL P+ RS+ +FSGQLAELE
Sbjct: 66 LADAAPSPSPSAASASGDDDDDDPFLPAGFVSAFSAFSLERHPVLARSASAFSGQLAELE 125
Query: 112 RTFELLSSSTTSTSSS---VMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATC 168
R + S+++++ + V +D+LRAY+QI+DVASIL LD DI DHAF+LF+DC SATC
Sbjct: 126 RALAVESAASSTPDPAGPMVSVDSLRAYVQIVDVASILRLDRDIADHAFELFKDCSSATC 185
Query: 169 LRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINS 228
LRNRSVEALATAALVQAIREAQEPRTLQEIS A+N+PQKEIGKYIKILGE+L+LSQP+NS
Sbjct: 186 LRNRSVEALATAALVQAIREAQEPRTLQEISTASNLPQKEIGKYIKILGESLKLSQPLNS 245
Query: 229 NSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKR 288
NSIAVHMPRFC+LLQLNKSAQ LA HIGEVV+NKCFCTRRNPISISAAAIYLACQLEDKR
Sbjct: 246 NSIAVHMPRFCSLLQLNKSAQELAAHIGEVVVNKCFCTRRNPISISAAAIYLACQLEDKR 305
Query: 289 KTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVK 348
KTQAEICKVTGLTEVTLRKVYKELLENWDDLLP NYTPA PPEKAFP TTI S R+ + K
Sbjct: 306 KTQAEICKVTGLTEVTLRKVYKELLENWDDLLPPNYTPATPPEKAFPMTTIYSSRSSSGK 365
Query: 349 VDSGEVTSVDKDKQPETKSIKVNEVIE 375
+ +DKQ ++ +K +E E
Sbjct: 366 -------DLYQDKQLDSAKLKSSEAAE 385
>gi|302764364|ref|XP_002965603.1| hypothetical protein SELMODRAFT_167797 [Selaginella moellendorffii]
gi|300166417|gb|EFJ33023.1| hypothetical protein SELMODRAFT_167797 [Selaginella moellendorffii]
Length = 342
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/340 (65%), Positives = 273/340 (80%), Gaps = 3/340 (0%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
++CPYCS +GRC + +GR ITEC +C RV+ ER+ Q H +F RA DTPLC+VT D
Sbjct: 4 IQCPYCSGLEGRCTPSGSGRFITECKACARVVDERRVQIHEVFVERATDTPLCIVTPDF- 62
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTF-ELLSS 119
S + + +D+DPF+ +GFITAFS WSL +PLF ++ + G LAELER E +
Sbjct: 63 SDNERFRVPPLDDDPFESSGFITAFSTWSLEATPLFTNTTSTVCGHLAELERVMAEYYPN 122
Query: 120 STTSTSSSV-MMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALA 178
+ + S+ ++D LRAY QI++V+S+LGL+ D +HA QLFRDC +AT LRNR++EALA
Sbjct: 123 GGANLAGSLNLVDMLRAYFQIVEVSSVLGLERDSSEHAIQLFRDCSTATLLRNRNIEALA 182
Query: 179 TAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRF 238
TAALVQA REAQEPRTLQEIS+AAN+PQKEI +++K+L +AL+LSQPINSNSI+VHMPRF
Sbjct: 183 TAALVQASREAQEPRTLQEISVAANIPQKEIARHMKLLSDALKLSQPINSNSISVHMPRF 242
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
C LLQLNK+ Q LA+HIGEVVI+K FCTRRNPISISAAAIYLACQLEDKRKTQ EICK T
Sbjct: 243 CNLLQLNKTTQDLASHIGEVVISKSFCTRRNPISISAAAIYLACQLEDKRKTQTEICKAT 302
Query: 299 GLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTT 338
GLTEVTLRKVYKELLEN DDL+P +YTPAVPPEKAFP TT
Sbjct: 303 GLTEVTLRKVYKELLENLDDLMPKDYTPAVPPEKAFPVTT 342
>gi|302769332|ref|XP_002968085.1| hypothetical protein SELMODRAFT_89981 [Selaginella moellendorffii]
gi|300163729|gb|EFJ30339.1| hypothetical protein SELMODRAFT_89981 [Selaginella moellendorffii]
Length = 343
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/341 (65%), Positives = 273/341 (80%), Gaps = 4/341 (1%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
++CPYCS +GRC + +GR ITEC +C RV+ ER+ Q H +F RA DTPLC+VT D
Sbjct: 4 IQCPYCSGLEGRCTPSGSGRFITECKACARVVDERRVQIHEVFVERATDTPLCIVTPDF- 62
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTF-ELLSS 119
S + + +D+DPF+ +GFITAFS WSL +PLF ++ + G LAELER E +
Sbjct: 63 SDNERFRVPPLDDDPFESSGFITAFSTWSLEATPLFTNTTSTVCGHLAELERVMAEYYPN 122
Query: 120 STTSTSSSV-MMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALA 178
+ + S+ ++D LRAY QI++V+S+LGL+ D +HA QLFRDC +AT LRNR++EALA
Sbjct: 123 GGANLAGSLNLVDMLRAYFQIVEVSSVLGLERDSSEHAIQLFRDCSTATLLRNRNIEALA 182
Query: 179 TAALVQAIREAQEPRTLQ-EISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPR 237
TAALVQA REAQEPRTLQ EIS+AAN+PQKEI +++K+L +AL+LSQPINSNSI+VHMPR
Sbjct: 183 TAALVQASREAQEPRTLQQEISVAANIPQKEIARHMKLLSDALKLSQPINSNSISVHMPR 242
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC LLQLNK+ Q LA+HIGEVVI+K FCTRRNPISISAAAIYLACQLEDKRKTQ EICK
Sbjct: 243 FCNLLQLNKTTQDLASHIGEVVISKSFCTRRNPISISAAAIYLACQLEDKRKTQTEICKA 302
Query: 298 TGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTT 338
TGLTEVTLRKVYKELLEN DDL+P +YTPAVPPEKAFP TT
Sbjct: 303 TGLTEVTLRKVYKELLENLDDLMPKDYTPAVPPEKAFPVTT 343
>gi|16516653|emb|CAC82716.1| TFIIB-related protein [Zea mays]
Length = 469
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/290 (76%), Positives = 245/290 (84%), Gaps = 4/290 (1%)
Query: 63 PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTT 122
P P D DEDPF P GF++AFSA+SL P+ RS+ +FSG LAELER + S++
Sbjct: 10 PSPSPGDEDDEDPFLPAGFVSAFSAFSLERHPVLARSASTFSGHLAELERALAVDSATAA 69
Query: 123 ST----SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALA 178
S V +D+LRAYLQI+DVASIL LD DI DHAF+LF+DC SATCLRNRSVEALA
Sbjct: 70 SNPDPAGPMVSVDSLRAYLQIVDVASILRLDRDIADHAFELFKDCSSATCLRNRSVEALA 129
Query: 179 TAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRF 238
TAALVQAIREAQ+PRTLQEIS A+N+PQKEIGKYIKILGE+L+LSQP+NSNSIAVHMPRF
Sbjct: 130 TAALVQAIREAQQPRTLQEISTASNLPQKEIGKYIKILGESLKLSQPLNSNSIAVHMPRF 189
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
C+LLQLNKSAQ LA HIGEVV NKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT
Sbjct: 190 CSLLQLNKSAQELAAHIGEVVANKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 249
Query: 299 GLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVK 348
GLTEVTLRKVYKELLENWDDLLP +YTPA PPEKAFP T I SGR+ + K
Sbjct: 250 GLTEVTLRKVYKELLENWDDLLPPDYTPATPPEKAFPMTNIYSGRSASGK 299
>gi|356495409|ref|XP_003516570.1| PREDICTED: uncharacterized protein LOC100777163 [Glycine max]
Length = 1100
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/351 (66%), Positives = 271/351 (77%), Gaps = 21/351 (5%)
Query: 159 LFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGE 218
LFRDCCSATCLRNRSVE+LATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGE
Sbjct: 128 LFRDCCSATCLRNRSVESLATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGE 187
Query: 219 ALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAI 278
ALQLSQPINSNSI+VHMPRFCTLLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAI
Sbjct: 188 ALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAI 247
Query: 279 YLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTT 338
YLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPE+AFPTT
Sbjct: 248 YLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTV 307
Query: 339 ITSGRAPTVKVDSGEV-TSVDKDKQPETKSIKVNEV--IETESNGPNADADG---AHA-- 390
I SGR+ T KVD+ EV +S+D +K P+ K K +EV + +S G + +A+G AHA
Sbjct: 308 IASGRSSTAKVDAVEVISSLDSEKLPDIKPSKPSEVSGMVHQSRGMD-EAEGKSNAHASH 366
Query: 391 PTLKRPSPFSQPWLHFAASNIRTTGEKNQIVVQG-DINEVQPGHQDLDQKLDEDTKPAT- 448
TL + S F Q S +R+ +Q V+QG DI+ +Q HQ + + EDT A
Sbjct: 367 STLNQQSTFWQ-------SQLRSGTHNHQNVLQGMDIDVLQRNHQR-PEHMAEDTNGAAN 418
Query: 449 -TTLRPSQFPC-TPVSTVTSLTWPFRPPPSMATASFQVVDPPKLQPGHIEL 497
++L+ + C P S+ +S+ F PPS ++ ++V PK+ P I +
Sbjct: 419 GSSLKSNNQLCSPPASSASSVMRQFSAPPSSGPSNVRLVQSPKIMPDTITI 469
>gi|125585264|gb|EAZ25928.1| hypothetical protein OsJ_09772 [Oryza sativa Japonica Group]
Length = 501
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/388 (57%), Positives = 264/388 (68%), Gaps = 50/388 (12%)
Query: 2 KCPYCSAAQ-GRCATTS--TGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSD 58
+CPYC A+ RC TT R+++EC SC R++ ER H F + PL LVT D
Sbjct: 6 QCPYCRASGPARCVTTQPPLSRAVSECSSCARLVLERHLHTHPFFPLLPSLHPLPLVTPD 65
Query: 59 LPSIPQPQQNDGVDED--------PFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAEL 110
L PF P GF++AFSA+SL P+ RS+ +FSGQLAEL
Sbjct: 66 LADAAPSPSPSAASASGDDDDDDDPFLPAGFVSAFSAFSLERHPVLARSASAFSGQLAEL 125
Query: 111 ERTFELLSSSTTSTSSS---VMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSAT 167
ER + S+++++ + V +D+LRAY+QI+
Sbjct: 126 ERALAVESAASSTPDPAGPMVSVDSLRAYVQIVT-------------------------- 159
Query: 168 CLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPIN 227
NRSVEALATAALVQAIREAQEPRTLQEIS A+N+PQKEIGKYIKILGE+L+LSQP+N
Sbjct: 160 ---NRSVEALATAALVQAIREAQEPRTLQEISTASNLPQKEIGKYIKILGESLKLSQPLN 216
Query: 228 SNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK 287
SNSIAVHMPRFC+LLQLNKSAQ LA HIGEVV+NKCFCTRRNPISISAAAIYLACQLEDK
Sbjct: 217 SNSIAVHMPRFCSLLQLNKSAQELAAHIGEVVVNKCFCTRRNPISISAAAIYLACQLEDK 276
Query: 288 RKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTV 347
RKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP NYTPA PPEKAFP TTI S R+ +
Sbjct: 277 RKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPPNYTPATPPEKAFPMTTIYSSRSSSG 336
Query: 348 KVDSGEVTSVDKDKQPETKSIKVNEVIE 375
K + +DKQ ++ +K +E E
Sbjct: 337 K-------DLYQDKQLDSAKLKSSEAAE 357
>gi|156070789|gb|ABU45201.1| unknown [Solanum bulbocastanum]
Length = 194
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 147/196 (75%), Positives = 166/196 (84%), Gaps = 2/196 (1%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
M+CPYCSA QGRC ++++GR ITEC SCGRV+ ER Q+HHLFH RAQD+PLCL TSDLP
Sbjct: 1 MRCPYCSAEQGRCTSSTSGRPITECTSCGRVVEERLTQSHHLFHTRAQDSPLCLATSDLP 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS 120
+ P ND DEDPF+PTGFITAFS WSL P P+F +SS SF+G LAELER E S+S
Sbjct: 61 TPPISATND--DEDPFEPTGFITAFSTWSLEPYPVFAQSSISFAGHLAELERVLETTSTS 118
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T+S+SSSV+++NLRAYLQIIDVASIL LDYDI DHAFQLFRDC SATCLRNRSVEALATA
Sbjct: 119 TSSSSSSVVVENLRAYLQIIDVASILRLDYDISDHAFQLFRDCSSATCLRNRSVEALATA 178
Query: 181 ALVQAIREAQEPRTLQ 196
ALV AIREAQEPRTLQ
Sbjct: 179 ALVHAIREAQEPRTLQ 194
>gi|358344337|ref|XP_003636246.1| Transcription initiation factor like protein [Medicago truncatula]
gi|355502181|gb|AES83384.1| Transcription initiation factor like protein [Medicago truncatula]
Length = 226
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 156/227 (68%), Positives = 181/227 (79%), Gaps = 7/227 (3%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
MKCPYCSAAQGRC TT+TG+SITEC SCGRV+ ERQ HH+FH+RAQD PLCLVT DLP
Sbjct: 1 MKCPYCSAAQGRCTTTTTGKSITECTSCGRVVEERQSHPHHIFHLRAQDNPLCLVTPDLP 60
Query: 61 --SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLS 118
++ Q + +EDPF+PTGFITAFS WSL PSPL+L+SS SFSG LAELERT E
Sbjct: 61 PPTLNQTNTDTNEEEDPFEPTGFITAFSTWSLEPSPLYLQSSLSFSGYLAELERTLE--- 117
Query: 119 SSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALA 178
SS+T++SSSV++DNLRAY+QIIDV+SILGL+ DI DHAFQLFRDCCSATCLRNRSVEALA
Sbjct: 118 SSSTNSSSSVVVDNLRAYMQIIDVSSILGLESDISDHAFQLFRDCCSATCLRNRSVEALA 177
Query: 179 TAALVQAIREAQEPRTLQEI--SIAANVPQKEIGKYIKILGEALQLS 223
TAALVQAIREAQEPRTLQ +P++ + I + E L S
Sbjct: 178 TAALVQAIREAQEPRTLQGFVKHHLCQLPKRTAFELITEVSEELMYS 224
>gi|115451333|ref|NP_001049267.1| Os03g0196900 [Oryza sativa Japonica Group]
gi|113547738|dbj|BAF11181.1| Os03g0196900, partial [Oryza sativa Japonica Group]
Length = 295
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/158 (76%), Positives = 134/158 (84%), Gaps = 7/158 (4%)
Query: 218 EALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAA 277
E+L+LSQP+NSNSIAVHMPRFC+LLQLNKSAQ LA HIGEVV+NKCFCTRRNPISISAAA
Sbjct: 1 ESLKLSQPLNSNSIAVHMPRFCSLLQLNKSAQELAAHIGEVVVNKCFCTRRNPISISAAA 60
Query: 278 IYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTT 337
IYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP NYTPA PPEKAFP T
Sbjct: 61 IYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPPNYTPATPPEKAFPMT 120
Query: 338 TITSGRAPTVKVDSGEVTSVDKDKQPETKSIKVNEVIE 375
TI S R+ + K + +DKQ ++ +K +E E
Sbjct: 121 TIYSSRSSSGK-------DLYQDKQLDSAKLKSSEAAE 151
>gi|428171136|gb|EKX40055.1| hypothetical protein GUITHDRAFT_113794 [Guillardia theta CCMP2712]
Length = 536
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 134/361 (37%), Positives = 201/361 (55%), Gaps = 30/361 (8%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQ-DTPLCLVTSDL 59
++C +C + + + +C +C ++ ER ++ + +I + ++P C V +D
Sbjct: 6 LECAFCKSTDLK---VNRANETIQCETCDHILEERY-NDYRVTNINFERESPYCAVVND- 60
Query: 60 PSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELL-- 117
S+ + + + V+ DPF GFITAFS SL F ++ +F G LAELER L
Sbjct: 61 -SLAKHKFDSNVEGDPFHAAGFITAFSQVSLQQQGAFTLTARTFPGDLAELERLLHDLDV 119
Query: 118 --------------------SSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAF 157
S S + + L AY +++DV ++G+ D A
Sbjct: 120 DCPVSAKQQQAAAALTGVKPKSKKDSGGYAKLRYILVAYFELLDVGEMMGIKRVDIDEAL 179
Query: 158 QLFRDCCSATC-LRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKIL 216
+LF+ A+ LR+++VE+LA A+LV +R+A R L E + A+ + QK++ + IK +
Sbjct: 180 RLFKQFVDASSNLRSKNVESLAIASLVLVMRKADRARDLPEFAAASGLLQKDLIQGIKAV 239
Query: 217 GEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAA 276
+AL S ++ S++ HMP+FC +L + A+ LA IGE CTRRNPISI+AA
Sbjct: 240 QQALDSSSMSSTASVSSHMPQFCRVLGMQGQAEQLAITIGENATTHNVCTRRNPISIAAA 299
Query: 277 AIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPT 336
AIYLAC LED++KTQ EICKVTGLTEVTLRKVYKELL+ D L+PS Y V + P
Sbjct: 300 AIYLACNLEDQKKTQTEICKVTGLTEVTLRKVYKELLQEHDKLIPSTYIAKVRLQTLLPL 359
Query: 337 T 337
+
Sbjct: 360 S 360
>gi|108706664|gb|ABF94459.1| TFIIB-related protein, putative, expressed [Oryza sativa Japonica
Group]
Length = 278
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 107/141 (75%), Positives = 117/141 (82%), Gaps = 7/141 (4%)
Query: 235 MPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 294
MPRFC+LLQLNKSAQ LA HIGEVV+NKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI
Sbjct: 1 MPRFCSLLQLNKSAQELAAHIGEVVVNKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 60
Query: 295 CKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEV 354
CKVTGLTEVTLRKVYKELLENWDDLLP NYTPA PPEKAFP TTI S R+ + K
Sbjct: 61 CKVTGLTEVTLRKVYKELLENWDDLLPPNYTPATPPEKAFPMTTIYSSRSSSGK------ 114
Query: 355 TSVDKDKQPETKSIKVNEVIE 375
+ +DKQ ++ +K +E E
Sbjct: 115 -DLYQDKQLDSAKLKSSEAAE 134
>gi|358344335|ref|XP_003636245.1| Transcription initiation factor like protein [Medicago truncatula]
gi|355502180|gb|AES83383.1| Transcription initiation factor like protein [Medicago truncatula]
Length = 124
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/125 (70%), Positives = 100/125 (80%), Gaps = 4/125 (3%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDL- 59
MKCPYCSAAQGRC TT+TG+SITEC SCGRV+ ERQ HH+FH+RAQD PLCLVT DL
Sbjct: 1 MKCPYCSAAQGRCTTTTTGKSITECTSCGRVVEERQSHPHHIFHLRAQDNPLCLVTPDLP 60
Query: 60 -PSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLS 118
P++ Q + +EDPF+PTGFITAFS WSL PSPL+L+SS SFSG LAELERT E S
Sbjct: 61 PPTLNQTNTDTNEEEDPFEPTGFITAFSTWSLEPSPLYLQSSLSFSGYLAELERTLE--S 118
Query: 119 SSTTS 123
SST S
Sbjct: 119 SSTNS 123
>gi|224057480|ref|XP_002195495.1| PREDICTED: transcription initiation factor IIB isoform 1
[Taeniopygia guttata]
Length = 316
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 119/212 (56%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I ++A + L +I D LF+ L+ RS +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITNMADRINLPRNIVDRTNNLFKQVYEQKSLKGRSNDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLGLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASSEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPADFKFDTPVDK 312
>gi|327270757|ref|XP_003220155.1| PREDICTED: transcription initiation factor IIB-like [Anolis
carolinensis]
Length = 316
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ RS +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEIASMADRINLPRNIVDRTNNLFKQVYEQKSLKGRSNDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLGLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL PS++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDK 312
>gi|449508196|ref|XP_004176261.1| PREDICTED: transcription initiation factor IIB isoform 2
[Taeniopygia guttata]
Length = 285
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 119/212 (56%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I ++A + L +I D LF+ L+ RS +A+A+A
Sbjct: 75 TMSSSDRAMMN---AFKEITNMADRINLPRNIVDRTNNLFKQVYEQKSLKGRSNDAIASA 131
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 132 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 189
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 190 NLGLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASSEKRTQKEIGDIAGV 249
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 250 ADVTIRQSYRLIYPRAPDLFPADFKFDTPVDK 281
>gi|363736712|ref|XP_422356.3| PREDICTED: transcription initiation factor IIB [Gallus gallus]
Length = 316
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 119/212 (56%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I ++A + L +I D LF+ L+ RS +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITNMADRINLPRNIVDRTNNLFKQVYEQKSLKGRSNDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLGLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPADFKFDTPVDK 312
>gi|62858845|ref|NP_001016277.1| general transcription factor 2B [Xenopus (Silurana) tropicalis]
gi|89266709|emb|CAJ83945.1| general transcription factor IIBgeneral transcription factor IIB
[Xenopus (Silurana) tropicalis]
Length = 316
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 119/212 (56%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I ++A + L +I D LF+ L+ RS +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITNMADRINLPRNIVDRTNNLFKQVYEQKSLKGRSNDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ + ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETN--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLGLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPADFKFDTPVDK 312
>gi|326925120|ref|XP_003208769.1| PREDICTED: transcription initiation factor IIB-like [Meleagris
gallopavo]
Length = 353
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 119/212 (56%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I ++A + L +I D LF+ L+ RS +A+A+A
Sbjct: 143 TMSSSDRAMMN---AFKEITNMADRINLPRNIVDRTNNLFKQVYEQKSLKGRSNDAIASA 199
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 200 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 257
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 258 NLGLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 317
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 318 ADVTIRQSYRLIYPRAPDLFPADFKFDTPVDK 349
>gi|449268065|gb|EMC78935.1| Transcription initiation factor IIB [Columba livia]
Length = 318
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I ++A + L +I D LF+ L+ RS +A+A+A
Sbjct: 108 TMSSSDRAMMN---AFKEITNMADRINLPRNIVDRTNNLFKQVYEQKSLKGRSNDAIASA 164
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 165 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 222
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q ++TQ EI + G+
Sbjct: 223 NLGLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASADKRTQKEIGDIAGV 282
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 283 ADVTIRQSYRLIYPRAPDLFPADFKFDTPVDK 314
>gi|395530416|ref|XP_003767291.1| PREDICTED: transcription initiation factor IIB, partial
[Sarcophilus harrisii]
Length = 343
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 133 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 189
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 190 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 247
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 248 NLGLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 307
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 308 ADVTIRQSYRLIYPRAPDLFPADFKFDTPVDK 339
>gi|147901135|ref|NP_001081115.1| transcription initiation factor IIB [Xenopus laevis]
gi|135632|sp|P29054.1|TF2B_XENLA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|65129|emb|CAA44668.1| TFIIB [Xenopus laevis]
gi|50603693|gb|AAH77495.1| Gtf2b-A protein [Xenopus laevis]
Length = 316
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 119/212 (56%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +++ + L +I D LF+ L+ RS +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITNMSDRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ + ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETN--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLGLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPADFKFDTPVDK 312
>gi|126305849|ref|XP_001364333.1| PREDICTED: transcription initiation factor IIB-like [Monodelphis
domestica]
Length = 316
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLGLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPADFKFDTPVDK 312
>gi|348586162|ref|XP_003478838.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor
IIB-like [Cavia porcellus]
Length = 317
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 107 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 163
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 164 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 221
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 222 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 281
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL PS++ P +K
Sbjct: 282 ADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDK 313
>gi|351705451|gb|EHB08370.1| Transcription initiation factor IIB, partial [Heterocephalus
glaber]
Length = 309
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 99 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 155
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 156 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 213
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 214 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 273
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL PS++ P +K
Sbjct: 274 ADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDK 305
>gi|338725267|ref|XP_001495317.2| PREDICTED: transcription initiation factor IIB-like [Equus
caballus]
Length = 415
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 205 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 261
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 262 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 319
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 320 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 379
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 380 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 411
>gi|74228747|dbj|BAE21864.1| unnamed protein product [Mus musculus]
Length = 316
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL PS++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDK 312
>gi|13591965|ref|NP_112303.1| transcription initiation factor IIB [Rattus norvegicus]
gi|21704076|ref|NP_663521.1| transcription initiation factor IIB [Mus musculus]
gi|51703316|sp|P62916.1|TF2B_RAT RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|51703324|sp|P62915.1|TF2B_MOUSE RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|55624|emb|CAA46766.1| alpha initiation factor [Rattus norvegicus]
gi|16741677|gb|AAH16637.1| General transcription factor IIB [Mus musculus]
gi|55391522|gb|AAH85345.1| General transcription factor IIB [Rattus norvegicus]
gi|74144729|dbj|BAE27344.1| unnamed protein product [Mus musculus]
gi|74147252|dbj|BAE27522.1| unnamed protein product [Mus musculus]
gi|74195918|dbj|BAE30517.1| unnamed protein product [Mus musculus]
gi|74211309|dbj|BAE26416.1| unnamed protein product [Mus musculus]
gi|74221596|dbj|BAE21509.1| unnamed protein product [Mus musculus]
gi|74226680|dbj|BAE26991.1| unnamed protein product [Mus musculus]
gi|148680097|gb|EDL12044.1| general transcription factor IIB [Mus musculus]
gi|149026117|gb|EDL82360.1| general transcription factor IIB [Rattus norvegicus]
Length = 316
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL PS++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDK 312
>gi|313221394|emb|CBY32147.1| unnamed protein product [Oikopleura dioica]
gi|313236423|emb|CBY11740.1| unnamed protein product [Oikopleura dioica]
Length = 314
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 109/195 (55%), Gaps = 2/195 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I +A + + D A F++ + L+ RS +A+A A L A R+ PRT
Sbjct: 115 AYREIGAMADRMNFPGSLVDRAKVNFKEAYESRQLKGRSNDAIAAACLYIACRQEGVPRT 174
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+EI VP+KEIG+ K++ + L+ S +N + M RFC L+LN+ + + H
Sbjct: 175 FKEICAVCTVPKKEIGRCFKLIIKTLEKS--VNVITSEDFMKRFCNSLRLNRQVEAASIH 232
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
I + + R+P+S++AAAIY+A Q + RKT EI VTG+ EVT+R+ YK++
Sbjct: 233 IAKKSVELDLVGGRSPLSLAAAAIYMASQASETRKTAKEIGDVTGVAEVTIRQSYKQMHP 292
Query: 315 NWDDLLPSNYTPAVP 329
DL P N+ A+P
Sbjct: 293 RARDLFPENFKFAIP 307
>gi|344249199|gb|EGW05303.1| Transcription initiation factor IIB [Cricetulus griseus]
Length = 285
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 75 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 131
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 132 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 189
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 190 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 249
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL PS++ P +K
Sbjct: 250 ADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDK 281
>gi|444512968|gb|ELV10226.1| Transcription initiation factor IIB [Tupaia chinensis]
Length = 298
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 88 TMSSSDRAMMN---AFKEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASA 144
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 145 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 202
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 203 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 262
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 263 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 294
>gi|148224786|ref|NP_001088125.1| general transcription factor 2B [Xenopus laevis]
gi|52430498|gb|AAH82943.1| LOC494830 protein [Xenopus laevis]
Length = 316
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 117/210 (55%), Gaps = 5/210 (2%)
Query: 123 STSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
S+S MM+ A+ +I +A + L +I D LF+ L+ RS +A+A+A L
Sbjct: 108 SSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRSNDAIASACL 164
Query: 183 VQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLL 242
A R+ PRT +EI + + +KEIG+ K++ +AL+ + ++ + M RFC+ L
Sbjct: 165 YIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETN--VDLITTGDFMSRFCSNL 222
Query: 243 QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+ +
Sbjct: 223 GLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVAD 282
Query: 303 VTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
VT+R+ Y+ + DL P+++ P +K
Sbjct: 283 VTIRQSYRLIYPRAPDLFPADFKFDTPVDK 312
>gi|417409265|gb|JAA51147.1| Putative transcription initiation factor tfiib, partial [Desmodus
rotundus]
Length = 276
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 66 TMSSSDRAMMN---AFREITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 122
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 123 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 180
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 181 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 240
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 241 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 272
>gi|410967657|ref|XP_003990334.1| PREDICTED: transcription initiation factor IIB [Felis catus]
Length = 316
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 312
>gi|355745435|gb|EHH50060.1| hypothetical protein EGM_00825 [Macaca fascicularis]
Length = 296
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 86 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 142
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 143 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 200
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 201 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 260
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 261 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 292
>gi|387019195|gb|AFJ51715.1| Transcription initiation factor IIB-like [Crotalus adamanteus]
Length = 316
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 117/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+ MM+ A+ +I +A + L +I D LF+ L+ RS +A+A+A
Sbjct: 106 TMSSFDRAMMN---AFKEIASMADRINLPRNIVDRTNNLFKQVYEQKSLKGRSNDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLGLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPADFRFDTPVDK 312
>gi|431897056|gb|ELK06320.1| Transcription initiation factor IIB [Pteropus alecto]
Length = 316
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 312
>gi|254934|gb|AAB23144.1| S300-II [Homo sapiens]
Length = 311
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 101 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 157
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 158 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 215
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 216 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 275
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 276 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 307
>gi|281338510|gb|EFB14094.1| hypothetical protein PANDA_006057 [Ailuropoda melanoleuca]
gi|355558148|gb|EHH14928.1| hypothetical protein EGK_00940, partial [Macaca mulatta]
Length = 310
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 100 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 156
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 157 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 214
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 215 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 274
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 275 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 306
>gi|354495851|ref|XP_003510042.1| PREDICTED: transcription initiation factor IIB-like [Cricetulus
griseus]
Length = 477
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 267 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 323
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 324 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 381
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 382 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 441
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL PS++ P +K
Sbjct: 442 ADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDK 473
>gi|332221838|ref|XP_003260070.1| PREDICTED: transcription initiation factor IIB [Nomascus
leucogenys]
Length = 316
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 312
>gi|4504193|ref|NP_001505.1| transcription initiation factor IIB [Homo sapiens]
gi|197102490|ref|NP_001126175.1| transcription initiation factor IIB [Pongo abelii]
gi|388453639|ref|NP_001253799.1| transcription initiation factor IIB [Macaca mulatta]
gi|57088257|ref|XP_537085.1| PREDICTED: transcription initiation factor IIB isoform 1 [Canis
lupus familiaris]
gi|296208436|ref|XP_002751091.1| PREDICTED: transcription initiation factor IIB [Callithrix jacchus]
gi|301764575|ref|XP_002917714.1| PREDICTED: transcription initiation factor IIB-like [Ailuropoda
melanoleuca]
gi|332809462|ref|XP_001147170.2| PREDICTED: transcription initiation factor IIB [Pan troglodytes]
gi|335287423|ref|XP_001929441.3| PREDICTED: transcription initiation factor IIB [Sus scrofa]
gi|344278936|ref|XP_003411247.1| PREDICTED: transcription initiation factor IIB [Loxodonta africana]
gi|395821801|ref|XP_003784220.1| PREDICTED: transcription initiation factor IIB [Otolemur garnettii]
gi|397473904|ref|XP_003808436.1| PREDICTED: transcription initiation factor IIB [Pan paniscus]
gi|402855161|ref|XP_003892206.1| PREDICTED: transcription initiation factor IIB [Papio anubis]
gi|403305513|ref|XP_003943308.1| PREDICTED: transcription initiation factor IIB [Saimiri boliviensis
boliviensis]
gi|426215922|ref|XP_004002218.1| PREDICTED: transcription initiation factor IIB [Ovis aries]
gi|426330265|ref|XP_004026141.1| PREDICTED: transcription initiation factor IIB [Gorilla gorilla
gorilla]
gi|135629|sp|Q00403.1|TF2B_HUMAN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=S300-II
gi|71153595|sp|Q5R886.1|TF2B_PONAB RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|75075384|sp|Q4R3J5.1|TF2B_MACFA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|37058|emb|CAA41958.1| IIB protein [Homo sapiens]
gi|339490|gb|AAA61149.1| transcription factor [Homo sapiens]
gi|18088837|gb|AAH20597.1| General transcription factor IIB [Homo sapiens]
gi|55730606|emb|CAH92024.1| hypothetical protein [Pongo abelii]
gi|67971960|dbj|BAE02322.1| unnamed protein product [Macaca fascicularis]
gi|158260667|dbj|BAF82511.1| unnamed protein product [Homo sapiens]
gi|167773977|gb|ABZ92423.1| general transcription factor IIB [synthetic construct]
gi|197692293|dbj|BAG70110.1| general transcription factor IIB [Homo sapiens]
gi|296489281|tpg|DAA31394.1| TPA: transcription initiation factor IIB [Bos taurus]
gi|306921489|dbj|BAJ17824.1| general transcription factor IIB [synthetic construct]
gi|349605874|gb|AEQ00964.1| Transcription initiation factor IIB-like protein [Equus caballus]
gi|380812116|gb|AFE77933.1| transcription initiation factor IIB [Macaca mulatta]
gi|383417803|gb|AFH32115.1| transcription initiation factor IIB [Macaca mulatta]
gi|384946652|gb|AFI36931.1| transcription initiation factor IIB [Macaca mulatta]
gi|410208354|gb|JAA01396.1| general transcription factor IIB [Pan troglodytes]
gi|410257026|gb|JAA16480.1| general transcription factor IIB [Pan troglodytes]
gi|410304078|gb|JAA30639.1| general transcription factor IIB [Pan troglodytes]
gi|410349827|gb|JAA41517.1| general transcription factor IIB [Pan troglodytes]
gi|228040|prf||1715332A transcription initiation factor IIB
Length = 316
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 312
>gi|440912096|gb|ELR61695.1| Transcription initiation factor IIB, partial [Bos grunniens mutus]
Length = 310
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 100 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 156
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 157 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 214
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 215 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 274
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 275 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 306
>gi|119593565|gb|EAW73159.1| general transcription factor IIB, isoform CRA_a [Homo sapiens]
Length = 285
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 75 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 131
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 132 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 189
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 190 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 249
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 250 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 281
>gi|119593566|gb|EAW73160.1| general transcription factor IIB, isoform CRA_b [Homo sapiens]
Length = 373
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 163 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 219
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 220 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 277
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 278 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 337
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 338 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 369
>gi|427787821|gb|JAA59362.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 315
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 117/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S++ +M+ A+ +I ++A + L I D A LF+ L+ RS +A+A+A
Sbjct: 105 TMSSADRALMN---AFREISNMADRINLTKTIVDRANLLFKQVHDGKTLKGRSNDAIASA 161
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + V +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 162 CLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 219
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L S Q ATHI + R+PIS++AAAIY+A Q + +K+Q EI + G+
Sbjct: 220 NLGLPSSVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASEDKKSQKEIGDIAGV 279
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ YK + +L P ++ P E+
Sbjct: 280 ADVTIRQSYKLMYPRAAELFPKDFKFFTPIEQ 311
>gi|255513741|gb|EET90006.1| Transcription factor TFIIB cyclin-related [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 380
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 113/195 (57%), Gaps = 2/195 (1%)
Query: 123 STSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
S +SS + L A ++ V+S LGL +I ++A L+R C +R R +E + A +
Sbjct: 183 SIASSSERNYLIALPELNRVSSYLGLPENIRENAALLYRKCVQNNLIRGRPIETVVQAVI 242
Query: 183 VQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLL 242
A R+A PRTL EI+ + +P+KEIG+ + + L L P+ ++ IA ++PR+ L
Sbjct: 243 YAACRKAGMPRTLDEIATISGLPKKEIGRAYRAISHELGLKIPL-TDPIA-YVPRYVNAL 300
Query: 243 QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
+L+ AQ A + + K + R+P +SAAA+Y+A L +R+TQ E+ V G+TE
Sbjct: 301 KLSGEAQEKAVELLNDAMAKGLVSGRSPTGVSAAAVYIAGALAGERRTQKEVADVAGVTE 360
Query: 303 VTLRKVYKELLENWD 317
VT+R Y+EL E +
Sbjct: 361 VTIRNRYRELKEQLN 375
>gi|432107068|gb|ELK32500.1| Transcription initiation factor IIB, partial [Myotis davidii]
Length = 310
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 117/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 100 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 156
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 157 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 214
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 215 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 274
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P ++ P +K
Sbjct: 275 ADVTIRQSYRLIYPRAPDLFPPDFKFDTPVDK 306
>gi|345329183|ref|XP_001508212.2| PREDICTED: transcription initiation factor IIB-like, partial
[Ornithorhynchus anatinus]
Length = 310
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S +M+ A+ +I ++A + L +I D LF+ L+ R +A+A+A
Sbjct: 100 TMSSSDRAIMN---AFKEITNMADRINLPRNIVDRTNTLFKQVYEQKSLKGRCNDAIASA 156
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 157 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 214
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 215 NLGLPKQVQMAATHIARKAVEIDLVPGRSPISVAAAAIYMASQASTEKRTQKEIGDIAGV 274
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 275 ADVTIRQSYRLIYPRAPDLFPADFKFDTPVDK 306
>gi|41054405|ref|NP_955991.1| transcription initiation factor IIB [Danio rerio]
gi|33585882|gb|AAH55569.1| General transcription factor IIB [Danio rerio]
Length = 316
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 116/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S M L A+ +I +A + L +I D LF+ L+ RS +A+A+A
Sbjct: 106 TMSSSDRAM---LNAFKEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ AT+I + R+PIS++AAAIY+A Q ++KTQ EI + G+
Sbjct: 221 NLGLPKQVQMAATYIARKAVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P ++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAADLFPPDFKFDTPVDK 312
>gi|291398563|ref|XP_002715922.1| PREDICTED: general transcription factor IIB isoform 2 [Oryctolagus
cuniculus]
Length = 316
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 117/210 (55%), Gaps = 5/210 (2%)
Query: 123 STSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L
Sbjct: 108 SSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACL 164
Query: 183 VQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLL 242
A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L
Sbjct: 165 YIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNL 222
Query: 243 QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+ +
Sbjct: 223 CLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVAD 282
Query: 303 VTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
VT+R+ Y+ + DL P+++ P +K
Sbjct: 283 VTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 312
>gi|291398561|ref|XP_002715921.1| PREDICTED: general transcription factor IIB isoform 1 [Oryctolagus
cuniculus]
Length = 315
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 117/210 (55%), Gaps = 5/210 (2%)
Query: 123 STSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L
Sbjct: 107 SSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACL 163
Query: 183 VQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLL 242
A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L
Sbjct: 164 YIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNL 221
Query: 243 QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+ +
Sbjct: 222 CLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVAD 281
Query: 303 VTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
VT+R+ Y+ + DL P+++ P +K
Sbjct: 282 VTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 311
>gi|442754741|gb|JAA69530.1| Putative transcription initiation factor tfiib [Ixodes ricinus]
Length = 315
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S +++ A+ +I ++A + L I D + LF+ L+ RS +A+A+A
Sbjct: 105 TMSSSDRALVN---AFREISNMADRINLTKTIVDRSNLLFKQVHDGKTLKGRSNDAIASA 161
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + V +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 162 CLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 219
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L S Q ATHI + + R+PIS++AAAIY+A Q + +K+Q EI + G+
Sbjct: 220 NLGLPSSVQKAATHIARKAVELDVVSGRSPISVAAAAIYMASQASEDKKSQKEIGDIAGV 279
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ YK + +L P ++ P E+
Sbjct: 280 ADVTIRQSYKLMYPRAAELFPDDFKFFTPIEQ 311
>gi|114051409|ref|NP_001039607.1| transcription initiation factor IIB [Bos taurus]
gi|122143863|sp|Q2KIN8.1|TF2B_BOVIN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|86438483|gb|AAI12571.1| General transcription factor IIB [Bos taurus]
Length = 316
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 117/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++ AAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAEAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 312
>gi|195999146|ref|XP_002109441.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
gi|190587565|gb|EDV27607.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
Length = 340
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +ALA+A+L A R+ P
Sbjct: 139 VNAFQEIATMADRINLPKTIVDRAKVLFKQGYELKSLKGRSNDALASASLYIACRQEGVP 198
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K + +AL+ + + S M RFC+ L L Q A
Sbjct: 199 RTFKEICAVSKISKKEIGRCFKAILKALETN--VEMISTQDFMSRFCSNLNLPNYVQKAA 256
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+HI I R+P+S++AAAIYLA Q D +K+Q EI V G+ +VT+R+ Y+ L
Sbjct: 257 SHIAHRAIELDLAPGRSPVSVTAAAIYLASQASDTKKSQKEIGDVAGVADVTIRQSYRLL 316
Query: 313 LENWDDLLPSNYTPAVP 329
L DL P+++ P
Sbjct: 317 LPRSKDLFPADFVFKTP 333
>gi|328703015|ref|XP_001951275.2| PREDICTED: transcription initiation factor IIB-like [Acyrthosiphon
pisum]
Length = 311
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 110/192 (57%), Gaps = 2/192 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L AY +I +A + L +I D A LF+ L+ RS +A+A+A+L A R+ P
Sbjct: 110 LNAYREIGLMADRINLPRNIVDRANVLFKQVHDGKNLKGRSNDAIASASLYIACRQEGVP 169
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + V +KEIG+ K++ +AL+ S ++ + M RFC L L Q A
Sbjct: 170 RTFKEICAVSKVSKKEIGRVFKLILKALETS--VDLITTGDFMSRFCCNLGLPNMVQRAA 227
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAI++A Q D++++Q EI + G+ EVT+++ YK +
Sbjct: 228 THIAKKAVEYDIVPGRSPISVAAAAIFMASQASDEKRSQKEIGDIAGVAEVTIKQSYKLI 287
Query: 313 LENWDDLLPSNY 324
L N L P ++
Sbjct: 288 LANATLLFPEDF 299
>gi|156372338|ref|XP_001628995.1| predicted protein [Nematostella vectensis]
gi|156215985|gb|EDO36932.1| predicted protein [Nematostella vectensis]
Length = 310
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 113/200 (56%), Gaps = 2/200 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A QLF+ L+ RS + +A+A L A R+ P
Sbjct: 109 MNAFREISIMADRINLPRKIVDRANQLFKQVHEQKSLKGRSNDTIASACLYIACRQEGVP 168
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RTL+EI + +KEIG+ K++ + L+ S + ++ M RFC+ L L S Q A
Sbjct: 169 RTLKEICAIGKISKKEIGRCFKLILKHLETSVDLITS--GDFMSRFCSNLTLPLSVQKAA 226
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
T+I + R+PISI+AAAIY+A Q +++++Q EI + G+ +VT+R+ Y+ L
Sbjct: 227 TYIARRAVELDLVAGRSPISIAAAAIYMASQASEEKRSQKEIGDIAGVADVTIRQSYRLL 286
Query: 313 LENWDDLLPSNYTPAVPPEK 332
+L P+++ AVP E+
Sbjct: 287 FPKARELFPADFKFAVPIER 306
>gi|213515448|ref|NP_001134769.1| Transcription initiation factor IIB [Salmo salar]
gi|209735868|gb|ACI68803.1| Transcription initiation factor IIB [Salmo salar]
gi|303661887|gb|ADM16053.1| Transcription initiation factor IIB [Salmo salar]
Length = 318
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 116/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S M L A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 108 TMSSSDRAM---LNAFKEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASA 164
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 165 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 222
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ AT+I + R+PIS++AAAIY+A Q ++KTQ EI + G+
Sbjct: 223 NLGLPKQVQMAATYIARKAVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGV 282
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P ++ P +K
Sbjct: 283 ADVTIRQSYRLIYPRAADLFPPDFKFDTPVDK 314
>gi|74180816|dbj|BAE25617.1| unnamed protein product [Mus musculus]
Length = 316
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 116/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIAYA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDLMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ DL PS++ P +K
Sbjct: 281 ADVTIRQSYRLNYPRAPDLFPSDFKFDTPVDK 312
>gi|354801973|gb|AER39748.1| transcription initiation factor IIB [Cyprinus carpio]
Length = 316
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 114/209 (54%), Gaps = 2/209 (0%)
Query: 124 TSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALV 183
T SS L A+ +I ++ + L +I D LF+ L+ RS +A+A+A L
Sbjct: 106 TMSSADRAMLNAFKEITTMSDRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLY 165
Query: 184 QAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQ 243
A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L
Sbjct: 166 IACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLG 223
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L K Q+ AT+I + R+PIS++AAAIY+A Q ++KTQ EI + G+ +V
Sbjct: 224 LPKQVQIAATYIARKAVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADV 283
Query: 304 TLRKVYKELLENWDDLLPSNYTPAVPPEK 332
T+R+ Y+ + DL P ++ P +K
Sbjct: 284 TIRQSYRLIYPRAADLFPPDFKFDTPVDK 312
>gi|391338244|ref|XP_003743470.1| PREDICTED: transcription initiation factor IIB-like [Metaseiulus
occidentalis]
Length = 314
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 2/197 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ +I + + L +I D + LF+ L+ RS +A+A+A L A R+ PRT
Sbjct: 115 AFREISAMGDRINLTRNIIDRSNALFKQVHDGRSLKGRSNDAIASACLYIACRQESVPRT 174
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+EI + V +KEIG+ K++ +AL+ S + + M RFC+ L L+ + Q ATH
Sbjct: 175 FKEICAVSKVSKKEIGRCFKLILKALETS--VELITTGDFMSRFCSNLALSTAVQKAATH 232
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
I + R+PIS++AAAIY+A Q ++K+Q EI + G+ EVT+R+ YK++
Sbjct: 233 IARKAVEMDIVAGRSPISVAAAAIYMASQASAEKKSQKEIGDIAGVAEVTIRQSYKQMYP 292
Query: 315 NWDDLLPSNYTPAVPPE 331
L P ++ P E
Sbjct: 293 RAAQLFPEDFKFHTPIE 309
>gi|66803286|ref|XP_635486.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
gi|74851622|sp|Q54FD6.1|TF2B_DICDI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|60463804|gb|EAL61980.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
Length = 325
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 111/204 (54%), Gaps = 1/204 (0%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I +A + L + D A +LFR + RSV+ + AAL A R+
Sbjct: 122 LAAFKEIGRMADHMNLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLS 181
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI+ NVP+KEI + KI+ E + + S RFC+ L+L + A
Sbjct: 182 RTFKEIAALTNVPKKEISRCYKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGA 241
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
H+ ++ ++ ++PIS++AA+IY+ QL +++TQ +I V+G++EVT+R YK+L
Sbjct: 242 EHVSKMAMDMGIVAGKSPISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDL 301
Query: 313 LENWDDLLPSNYTPAVPPEKAFPT 336
D L+PS+ +P + PT
Sbjct: 302 YAKRDQLIPSD-SPYFSQVQYLPT 324
>gi|351707652|gb|EHB10571.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 234
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 116/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S S MM+ A+ + +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 24 TMSISDRAMMN---AFKETTPMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 80
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 81 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 138
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 139 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 198
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL PS++ P +K
Sbjct: 199 ADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDK 230
>gi|198428626|ref|XP_002129417.1| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) (S300-II) [Ciona
intestinalis]
Length = 314
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 119/217 (54%), Gaps = 6/217 (2%)
Query: 114 FELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRS 173
F S+ T +S ++ + A+ +I +A + L +I D + +LF+ + LR R+
Sbjct: 96 FSQFSNRKTMNNSDRVL--IHAFREISSMADRISLPKNIVDRSNKLFKQVYDSKSLRGRA 153
Query: 174 VEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIA 232
+A++ A L A R+ PRT +EI + + +KEIG+ K++ + L+ + + I S
Sbjct: 154 NDAISAACLYIACRQEGVPRTFKEICAISRISKKEIGRSFKLIVKNLETNVEVITSGDF- 212
Query: 233 VHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQA 292
M RFC+ L L Q AT+I + K R+PIS++AAAIY+A Q ++++Q
Sbjct: 213 --MSRFCSNLNLPPYVQRGATYIARKAVEKDLVAGRSPISVAAAAIYMASQASKEKRSQK 270
Query: 293 EICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVP 329
EI ++ G+ EVT+R+ YK + DL P ++ +P
Sbjct: 271 EISEIAGVAEVTIRQSYKLMHPRAKDLFPEDFNFHIP 307
>gi|156546454|ref|XP_001607291.1| PREDICTED: transcription initiation factor IIB-like [Nasonia
vitripennis]
Length = 315
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 110/200 (55%), Gaps = 2/200 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A+A+A L A R+ P
Sbjct: 114 INAFREINAMADRINLPRTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVP 173
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L Q A
Sbjct: 174 RTFKEICAVSKISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLGLPNMVQRAA 231
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI ++ R+PIS++AAAIY+A Q D +K+Q EI + G+ +VT+R+ YK +
Sbjct: 232 THIARKAVDIDIVPGRSPISVTAAAIYMASQASDDKKSQKEIGDIAGVADVTIRQSYKLM 291
Query: 313 LENWDDLLPSNYTPAVPPEK 332
+ L P ++ P ++
Sbjct: 292 FPHAARLFPEDFKFTTPIDQ 311
>gi|242013902|ref|XP_002427639.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
gi|212512060|gb|EEB14901.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
Length = 313
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S +++ A+ +I +A + L I D A LF+ L+ R+ +A+A+A
Sbjct: 103 TMSSSDRALIN---AFREINAMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASA 159
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
AL A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 160 ALYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 217
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L Q ATHI + R+PIS++AAAIY+A Q D ++ Q EI + G+
Sbjct: 218 NLGLPNMVQRAATHIARKAVELDIVPGRSPISVAAAAIYMASQASDDKRVQKEIGDIAGV 277
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ YK + + L P ++ + P E+
Sbjct: 278 ADVTIRQSYKLMYPHATKLFPEDFQFSTPIEE 309
>gi|157833927|pdb|1TFB|A Chain A, Nmr Studies Of Human General Transcription Factor Tfiib:
Dynamics And Interaction With Vp16 Activation Domain, 20
Structures
Length = 208
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 116/208 (55%), Gaps = 5/208 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L
Sbjct: 2 ASRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYI 58
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQL 244
A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L
Sbjct: 59 ACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCL 116
Query: 245 NKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+ +VT
Sbjct: 117 PKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVT 176
Query: 305 LRKVYKELLENWDDLLPSNYTPAVPPEK 332
+R+ Y+ + DL P+++ P +K
Sbjct: 177 IRQSYRLIYPRAPDLFPTDFKFDTPVDK 204
>gi|47215967|emb|CAF96369.1| unnamed protein product [Tetraodon nigroviridis]
Length = 344
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 115/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S M L A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 134 TMSSSDRAM---LNAFKEISTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASA 190
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 191 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 248
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ AT I + R+PIS++AAAIY+A Q ++KTQ EI + G+
Sbjct: 249 NLGLPKQVQMAATFIARKAVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGV 308
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + +L P ++ P +K
Sbjct: 309 ADVTIRQSYRLIYPRAAELFPPDFKFDTPVDK 340
>gi|170041267|ref|XP_001848391.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
gi|167864865|gb|EDS28248.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
Length = 316
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 115 IAAFKEISTMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 174
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL S ++ + A M RFC L L + Q A
Sbjct: 175 RTFKEICAVSKISKKEIGRCFKLTLKALATS--VDLITTADFMSRFCANLDLPNTVQRAA 232
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q D++KT EI + G+ +VT+R+ Y+ +
Sbjct: 233 THIARKAVEMDIVPGRSPISVAAAAIYMASQASDQKKTHKEIGDIAGVADVTIRQSYRLM 292
Query: 313 LENWDDLLPSNYTPAVPPEK 332
+ +L P ++ P E+
Sbjct: 293 YPHAAELFPEDFKYTTPIEQ 312
>gi|146387163|pdb|2PHG|A Chain A, Model For Vp16 Binding To Tfiib
Length = 206
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 5/207 (2%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L A
Sbjct: 1 SRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIA 57
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L
Sbjct: 58 CRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCLP 115
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+ +VT+
Sbjct: 116 KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTI 175
Query: 306 RKVYKELLENWDDLLPSNYTPAVPPEK 332
R+ Y+ + DL P+++ P +K
Sbjct: 176 RQSYRLIYPRAPDLFPTDFKFDTPVDK 202
>gi|6980707|pdb|1C9B|A Chain A, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980709|pdb|1C9B|E Chain E, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980711|pdb|1C9B|I Chain I, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980713|pdb|1C9B|M Chain M, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980715|pdb|1C9B|Q Chain Q, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 207
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 115/208 (55%), Gaps = 5/208 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A L
Sbjct: 1 SDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYI 57
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQL 244
A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L
Sbjct: 58 ACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCL 115
Query: 245 NKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+ +VT
Sbjct: 116 PKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVT 175
Query: 305 LRKVYKELLENWDDLLPSNYTPAVPPEK 332
+R+ Y+ + DL P+++ P +K
Sbjct: 176 IRQSYRLIYPRAPDLFPTDFKFDTPVDK 203
>gi|432911722|ref|XP_004078691.1| PREDICTED: transcription initiation factor IIB-like [Oryzias
latipes]
Length = 318
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 115/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S M L A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 108 TMSSSDRAM---LHAFKEISTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 164
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 165 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 222
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ AT I + R+PIS++AAAIY+A Q ++KTQ EI + G+
Sbjct: 223 NLGLPKQVQMAATFIARKAVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGV 282
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + +L P ++ P +K
Sbjct: 283 ADVTIRQSYRLIYPRAAELFPPDFKFDTPVDK 314
>gi|322794062|gb|EFZ17278.1| hypothetical protein SINV_13223 [Solenopsis invicta]
Length = 321
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 111/200 (55%), Gaps = 2/200 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I +A + L I D A LF+ L+ R+ +A+A+A L A R+ P
Sbjct: 109 LNAFREINGMADRINLPKTIVDRANALFKQVHDGKNLKGRANDAIASACLYIACRQEGVP 168
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L Q A
Sbjct: 169 RTFKEICAVSKISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLGLPNMVQKAA 226
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 227 THIARKAVEIDIVPGRSPISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLM 286
Query: 313 LENWDDLLPSNYTPAVPPEK 332
+ + L P ++ A P ++
Sbjct: 287 YPHANKLFPEDFKFATPIDQ 306
>gi|260797487|ref|XP_002593734.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
gi|229278962|gb|EEN49745.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
Length = 319
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L +I D LF+ L+ RS +A++ A L A R+ P
Sbjct: 118 VNAFREITGMADRINLPRNIVDRTQMLFKQVNDQKSLKGRSNDAISAACLYIACRQEGVP 177
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + V +KEIG+ K++ +AL+ S + + M RFC+ L L Q A
Sbjct: 178 RTFKEICAISRVSKKEIGRVFKLILKALETS--VELITTGDFMSRFCSNLNLPSQVQRAA 235
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q ++++TQ EI + G+ +VT+R+ Y+ +
Sbjct: 236 THIARKAVELDLVPGRSPISVAAAAIYMASQASEEKRTQKEIGDIAGVADVTIRQSYRLI 295
Query: 313 LENWDDLLPSNYTPAVP 329
+L P+++T P
Sbjct: 296 YPRAHELFPADFTFHTP 312
>gi|348500548|ref|XP_003437835.1| PREDICTED: transcription initiation factor IIB-like [Oreochromis
niloticus]
gi|50844459|gb|AAT84346.1| general transcription factor II B [Oreochromis mossambicus]
Length = 318
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 115/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S M L A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 108 TMSSSDRAM---LNAFKEISTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 164
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 165 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 222
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ AT I + R+PIS++AAAIY+A Q ++KTQ EI + G+
Sbjct: 223 NLGLPKQVQMAATFIARKAVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGV 282
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + +L P ++ P +K
Sbjct: 283 ADVTIRQSYRLIYPRAAELFPPDFKFDTPVDK 314
>gi|410924600|ref|XP_003975769.1| PREDICTED: transcription initiation factor IIB-like [Takifugu
rubripes]
Length = 318
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 115/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S M L A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 108 TMSSSDRAM---LNAFKEISTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASA 164
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 165 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 222
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ AT I + R+PIS++AAAIY+A Q ++KTQ EI + G+
Sbjct: 223 NLGLPKQVQMAATFIARKAVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGV 282
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + +L P ++ P +K
Sbjct: 283 ADVTIRQSYRLIYPRAAELFPPDFKFDTPVDK 314
>gi|307179392|gb|EFN67722.1| Transcription initiation factor IIB [Camponotus floridanus]
Length = 315
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 110/200 (55%), Gaps = 2/200 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I +A + L I D A LF+ L+ R+ +A+A+A L A R+ P
Sbjct: 114 LNAFREINGMADRINLPKTIVDRANTLFKQVHDGKNLKGRANDAIASACLYIACRQEGVP 173
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L Q A
Sbjct: 174 RTFKEICAVSKISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLGLPNMVQRAA 231
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 232 THIARKAVEIDIVPGRSPISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLM 291
Query: 313 LENWDDLLPSNYTPAVPPEK 332
+ L P ++ A P ++
Sbjct: 292 YPHASKLFPEDFRFATPIDQ 311
>gi|167044706|gb|ABZ09376.1| putative transcription factor TFIIB repeat protein [uncultured
marine microorganism HF4000_APKG7N23]
Length = 242
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+AS +GL + + A L+R +R RSVE +A AAL A R + PRTL EI+ A
Sbjct: 64 LASKIGLHRQVREEAAMLYRRAVQDNLVRGRSVEGVAAAALYGACRRCEVPRTLSEITEA 123
Query: 202 ANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVI 260
+ +KE+G+ + + L+L+ QP S AV++ RFC L+L + A +I I
Sbjct: 124 SRASKKEVGRTYRYISRELKLNLQPA---SPAVYIIRFCRELELPGYVESAAINILNQAI 180
Query: 261 NKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ R P ++AAAIY+A + D+RKTQ I G+TEVT+R YKEL +N D
Sbjct: 181 EAELTSGRGPTGVAAAAIYIASVVYDQRKTQKTIADTVGVTEVTIRNRYKELAKNLD 237
>gi|383862315|ref|XP_003706629.1| PREDICTED: transcription initiation factor IIB-like [Megachile
rotundata]
Length = 315
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 114/209 (54%), Gaps = 5/209 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S +++ A+ +I +A + L I D A LF+ L+ R+ +A+A+A
Sbjct: 105 TMSSSDRALIN---AFREINGMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASA 161
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 162 CLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 219
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L Q ATHI + R+PIS++AAAIY+A Q + +++Q EI + G+
Sbjct: 220 NLGLPNMVQRAATHIARKAVEIDIVPGRSPISVAAAAIYMASQASEDKRSQKEIGDIAGV 279
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVP 329
+VT+R+ YK + + L P ++ A P
Sbjct: 280 ADVTIRQSYKLMYPHAGKLFPEDFKFATP 308
>gi|48102797|ref|XP_395432.1| PREDICTED: transcription initiation factor IIB isoform 1 [Apis
mellifera]
gi|380019249|ref|XP_003693523.1| PREDICTED: transcription initiation factor IIB-like [Apis florea]
Length = 315
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 116/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S +++ A+ +I +A + L I D A LF+ L+ R+ +A+A+A
Sbjct: 105 TMSSSDRALIN---AFREINGMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASA 161
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 162 CLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 219
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L Q ATHI + R+PIS++AAAIY+A Q + +++Q EI + G+
Sbjct: 220 NLGLPNMVQRAATHIARKAVEIDIVPGRSPISVAAAAIYMASQASEDKRSQKEIGDIAGV 279
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ YK + + L P ++ A P ++
Sbjct: 280 ADVTIRQSYKLMYPHAGKLFPEDFRFATPIDQ 311
>gi|332025651|gb|EGI65813.1| Transcription initiation factor IIB [Acromyrmex echinatior]
Length = 308
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 10/221 (4%)
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN 171
RT +++SSS + L A+ +I +A + L I D A LF+ L+
Sbjct: 94 RTNDIMSSSDRTL--------LNAFREINGMADRINLPKTIVDRANTLFKQVHDGKNLKG 145
Query: 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI 231
R+ +A+A+A L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ +
Sbjct: 146 RANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETS--VDLITT 203
Query: 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ 291
M RFC+ L L Q ATHI + R+PIS++AAAIY+A Q + +++Q
Sbjct: 204 GDFMSRFCSNLGLPNMVQRAATHIARKAVEIDIVPGRSPISVAAAAIYMASQASEDKRSQ 263
Query: 292 AEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
EI G+ +VT+R+ YK + + L P ++ A P ++
Sbjct: 264 KEIGDTAGVADVTIRQSYKLMYPHASQLFPEDFRFATPIDQ 304
>gi|357624850|gb|EHJ75466.1| hypothetical protein KGM_17256 [Danaus plexippus]
Length = 285
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 109/199 (54%), Gaps = 2/199 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ R+ +A+A+A L A R+ P
Sbjct: 84 INAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVP 143
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + A M RFC L L S Q A
Sbjct: 144 RTFKEICAVSKISKKEIGRCFKLILKALETS--VDLITTADFMSRFCANLGLPNSVQRAA 201
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 202 THIARKAGELDIVSGRSPISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLM 261
Query: 313 LENWDDLLPSNYTPAVPPE 331
L P ++ A P E
Sbjct: 262 YPCAAKLFPEDFKFATPIE 280
>gi|328865397|gb|EGG13783.1| transcription initiation factor IIB [Dictyostelium fasciculatum]
Length = 331
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 1/192 (0%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I ++ +GL + D A +LFR ++ +S + + A+L A R
Sbjct: 127 LAAFKEIEKMSDHIGLPQTVQDTAKELFRQMDDRKPMKGKSADGMLAASLYMACRIDGIA 186
Query: 193 RTLQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVL 251
RT +E+ +++ NV +KE+ K K + EAL +++ S M RFC+ L L +
Sbjct: 187 RTFKEVCALSNNVSKKELAKCYKQMREALGDVHSLHAISTDDFMTRFCSNLSLPNDVKKA 246
Query: 252 ATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 311
A H+ I+ +NP+S++AAAIYL QL ++TQ I V+G++EVT+R VYK+
Sbjct: 247 ADHVSRTAIDLGIVAGKNPLSVTAAAIYLVSQLSADKRTQKAISDVSGVSEVTIRNVYKD 306
Query: 312 LLENWDDLLPSN 323
L D LLP N
Sbjct: 307 LYSKRDSLLPPN 318
>gi|350417950|ref|XP_003491660.1| PREDICTED: transcription initiation factor IIB-like [Bombus
impatiens]
Length = 315
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 116/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S +++ A+ +I +A + L I D A LF+ L+ R+ +A+A+A
Sbjct: 105 TMSSSDRALIN---AFREINGMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASA 161
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 162 CLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 219
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L Q ATHI + R+PIS++AAAIY+A Q + +++Q EI + G+
Sbjct: 220 NLGLPNMVQRAATHIARKAVEIDIVPGRSPISVAAAAIYMASQASEDKRSQKEIGDIAGV 279
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ YK + + L P ++ A P ++
Sbjct: 280 ADVTIRQSYKLMYPHAGKLFPEDFRFATPIDQ 311
>gi|1943468|pdb|1VOL|A Chain A, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
Length = 204
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 111/200 (55%), Gaps = 2/200 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L + D LFR L+ R+ +A+A+A L A R+ P
Sbjct: 3 MNAFKEITTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEGVP 62
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L K Q+ A
Sbjct: 63 RTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCLPKQVQMAA 120
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q +++TQ EI + G+ +VT+R+ Y+ +
Sbjct: 121 THIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 180
Query: 313 LENWDDLLPSNYTPAVPPEK 332
DL P+++ P +K
Sbjct: 181 YPRAPDLFPTDFKFDTPVDK 200
>gi|270006604|gb|EFA03052.1| hypothetical protein TcasGA2_TC010900 [Tribolium castaneum]
Length = 315
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 116/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S +++ A+ +I +A + L I D A LF+ L+ RS +A+A+A
Sbjct: 105 TMSSSDRALIN---AFREINGMADRINLPRTIVDRANNLFKQVHDGRNLKGRSNDAIASA 161
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + ++EIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 162 CLYIACRQEGVPRTFKEICAVSKISKREIGRCFKLILKALETS--VDLITTGDFMSRFCS 219
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L Q ATHI + R+PIS++AAAIY+A Q + +++Q EI + G+
Sbjct: 220 NLGLPNMVQRAATHIARKAVELDIVPGRSPISVAAAAIYMASQASEDKRSQKEIGDIAGV 279
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ YK + + L P ++ A P ++
Sbjct: 280 ADVTIRQSYKLMYPHAVKLFPEDFKFATPIDQ 311
>gi|189236988|ref|XP_970151.2| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) [Tribolium castaneum]
Length = 313
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 116/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S +++ A+ +I +A + L I D A LF+ L+ RS +A+A+A
Sbjct: 103 TMSSSDRALIN---AFREINGMADRINLPRTIVDRANNLFKQVHDGRNLKGRSNDAIASA 159
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + ++EIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 160 CLYIACRQEGVPRTFKEICAVSKISKREIGRCFKLILKALETS--VDLITTGDFMSRFCS 217
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L Q ATHI + R+PIS++AAAIY+A Q + +++Q EI + G+
Sbjct: 218 NLGLPNMVQRAATHIARKAVELDIVPGRSPISVAAAAIYMASQASEDKRSQKEIGDIAGV 277
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ YK + + L P ++ A P ++
Sbjct: 278 ADVTIRQSYKLMYPHAVKLFPEDFKFATPIDQ 309
>gi|157109646|ref|XP_001650763.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878947|gb|EAT43172.1| AAEL005368-PB [Aedes aegypti]
Length = 318
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 115 IAAFKEISTMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 174
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL S ++ + A M RFC L L + Q A
Sbjct: 175 RTFKEICAVSKISKKEIGRCFKLTLKALATS--VDLITTADFMSRFCANLDLPNTVQRAA 232
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q D++KT EI + G+ +VT+R+ Y+ +
Sbjct: 233 THIARKAVEMDIVPGRSPISVAAAAIYMASQASDQKKTHKEIGDIAGVADVTIRQSYRLM 292
Query: 313 LENWDDLLPSNYTPAVP 329
+ +L P ++ P
Sbjct: 293 HPHAAELFPEDFKFTTP 309
>gi|157109648|ref|XP_001650764.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878948|gb|EAT43173.1| AAEL005368-PA [Aedes aegypti]
Length = 316
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 115 IAAFKEISTMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 174
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL S ++ + A M RFC L L + Q A
Sbjct: 175 RTFKEICAVSKISKKEIGRCFKLTLKALATS--VDLITTADFMSRFCANLDLPNTVQRAA 232
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q D++KT EI + G+ +VT+R+ Y+ +
Sbjct: 233 THIARKAVEMDIVPGRSPISVAAAAIYMASQASDQKKTHKEIGDIAGVADVTIRQSYRLM 292
Query: 313 LENWDDLLPSNYTPAVP 329
+ +L P ++ P
Sbjct: 293 HPHAAELFPEDFKFTTP 309
>gi|405962690|gb|EKC28341.1| Transcription initiation factor IIB [Crassostrea gigas]
Length = 319
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I + L L I D A LF+ L+ RS +A+A+A + A R+ P
Sbjct: 118 INAFREIGQMGDRLNLPRMIADRANTLFKQVHEGKALKGRSNDAIASACMYIACRQEGVP 177
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K++ + L+ + + + M RFC+ L L S Q A
Sbjct: 178 RTFKEICAVSKISKKEIGRVFKLILKNLETN--VELITTGDFMSRFCSNLSLPNSVQKAA 235
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI ++ R+PIS++AAAIY+A Q +K+Q EI + G+ EVT+R+ YK +
Sbjct: 236 THIARKAVDLDLTPGRSPISVAAAAIYMASQASADKKSQKEIGDIAGVAEVTIRQSYKLM 295
Query: 313 LENWDDLLPSNYTPAVPPEK 332
L P ++ P E+
Sbjct: 296 YPKAHLLFPEDFDFVTPIEQ 315
>gi|291232704|ref|XP_002736287.1| PREDICTED: general transcription factor IIB-like [Saccoglossus
kowalevskii]
Length = 315
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 106/199 (53%), Gaps = 2/199 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I +A + L I D LF+ LR RS +A+A A L A R+ P
Sbjct: 114 LNAFREIAQMADRINLPKTIVDRTNTLFKQVHEQRTLRGRSNDAIAAACLYIACRQEGVP 173
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + V +KEIG+ K + +AL+ S ++ + M RFC+ L L Q A
Sbjct: 174 RTFKEICAISRVSKKEIGRCFKEILKALETS--VDLITTGDFMSRFCSNLGLPSRVQKAA 231
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAIYLA Q +++K+Q EI V G+ +VT+R+ Y+ +
Sbjct: 232 THIAKKAVEMDLVPGRSPISVAAAAIYLASQASEEKKSQKEIGDVAGVADVTIRQSYRLI 291
Query: 313 LENWDDLLPSNYTPAVPPE 331
L P ++ A E
Sbjct: 292 FPKAVSLFPEDFKFATSIE 310
>gi|321461615|gb|EFX72645.1| hypothetical protein DAPPUDRAFT_325996 [Daphnia pulex]
Length = 318
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 117/214 (54%), Gaps = 7/214 (3%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S +++ A+ +I ++A + L I D A LF+ L+ RS +A+A+A
Sbjct: 106 TMSSSDRALVN---AFKEISNMADRINLPRTIVDRANNLFKQVHDGKNLKGRSNDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L + R+ PRT +EI + + +KEIG+ K++ +AL+ S I + A M RFC+
Sbjct: 163 CLYISCRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDIITT--ADFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK--RKTQAEICKVT 298
L L Q A+HI + R+PIS++AAAIY+A Q D+ +KTQ EI +
Sbjct: 221 NLGLPTMVQRAASHIARKAVELDIVPGRSPISVAAAAIYMASQASDEKSKKTQKEIGDIA 280
Query: 299 GLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
G+ +VT+R+ YK + +L P ++ P E+
Sbjct: 281 GVADVTIRQSYKLMYPRAAELFPEDFRFTTPIEQ 314
>gi|332376975|gb|AEE63627.1| unknown [Dendroctonus ponderosae]
Length = 315
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 2/220 (0%)
Query: 113 TFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNR 172
TF + T +S + A+ +I +A + L I D A LF+ L+ R
Sbjct: 94 TFGVARYQNRRTMNSSDRALINAFKEINAMADRINLPRTIVDRANNLFKQVHDGRNLKGR 153
Query: 173 SVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIA 232
S +A+A+A L A R+ PRT +EI + + ++EIG+ K++ +AL+ S ++ +
Sbjct: 154 SNDAIASACLYIACRQEGVPRTFKEICAVSKISKREIGRCFKLILKALETS--VDLITTG 211
Query: 233 VHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQA 292
M RFC+ L L Q ATHI + R+PIS++AAAIY+A Q + +++Q
Sbjct: 212 DFMSRFCSNLGLPNMVQRAATHIARKAVELDIVPGRSPISVAAAAIYMASQASEDKRSQK 271
Query: 293 EICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
EI + G+ +VT+R+ YK + + L P ++ A P ++
Sbjct: 272 EIGDIAGVADVTIRQSYKLMYPHAASLFPPDFKFATPIDQ 311
>gi|289740973|gb|ADD19234.1| transcription initiation factor tFIIB [Glossina morsitans
morsitans]
Length = 314
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 113 ISAFKEISMMADRINLPKTIIDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 172
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL+ S ++ + A M RFC L L + Q A
Sbjct: 173 RTFKEICAVSKISKKEIGRCFKLTLKALETS--VDLITTADFMSRFCANLDLPNTVQRAA 230
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 231 THIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLM 290
Query: 313 LENWDDLLPSNYTPAVP 329
L P ++ P
Sbjct: 291 YPEAAKLFPEDFKFTTP 307
>gi|158288246|ref|XP_310128.4| AGAP009558-PA [Anopheles gambiae str. PEST]
gi|157019157|gb|EAA05904.4| AGAP009558-PA [Anopheles gambiae str. PEST]
Length = 316
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 107/204 (52%), Gaps = 2/204 (0%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 115 IAAFKEISTMADRINLPKTITDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 174
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL S ++ + A M RFC L L Q A
Sbjct: 175 RTFKEICAVSKISKKEIGRCFKLTLKALATS--VDLITTADFMSRFCANLDLPNVVQRAA 232
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q D +KT EI + G+ +VT+R+ Y+ +
Sbjct: 233 THIARKAVEMDIVPGRSPISVAAAAIYMASQASDNKKTHKEIGDIAGVADVTIRQSYRLM 292
Query: 313 LENWDDLLPSNYTPAVPPEKAFPT 336
+ +L P ++ P ++ P
Sbjct: 293 YPHAAELFPEDFNFHTPIDQLPPV 316
>gi|307197188|gb|EFN78510.1| Transcription initiation factor IIB [Harpegnathos saltator]
Length = 373
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 116/212 (54%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S +++ A+ +I +A + L I D A LF+ L+ R+ +A+A+A
Sbjct: 163 TMSSSDRALVN---AFREINGMADRINLPKTIVDRANTLFKQVHDGKNLKGRANDAIASA 219
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 220 CLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 277
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L Q ATHI + R+PIS++AAAIY+A Q + +++Q EI + G+
Sbjct: 278 NLGLPNMVQRAATHIARKAVEIDIVPGRSPISVAAAAIYMASQASEDKRSQKEIGDIAGV 337
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ YK + + L P ++ A P ++
Sbjct: 338 ADVTIRQSYKLMYPHACKLFPEDFKFATPIDQ 369
>gi|11498897|ref|NP_070128.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
gi|14195234|sp|O28970.1|TF2B_ARCFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2649280|gb|AAB89947.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
Length = 326
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 138/296 (46%), Gaps = 12/296 (4%)
Query: 24 ECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFIT 83
ECGS R +++ QD L + + + + P+ + D D G
Sbjct: 32 ECGS------PRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRSRVGAPV 85
Query: 84 AFSAWSLVPSPLFLRSSHSFSGQLAELE---RTFELLSSSTTSTSSSVMMDNLRAYLQII 140
++ S + S+ + G+ + + F L S+ NL L +
Sbjct: 86 TYTIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSEL 145
Query: 141 D-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEIS 199
D +AS LGL + + A ++R +R RS+E + AAL A R+A PRTL EI+
Sbjct: 146 DRMASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIA 205
Query: 200 IAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVV 259
+ V +KEIG+ + + L L + S A ++PRFC L L+ Q A I +
Sbjct: 206 TYSRVDRKEIGRTYRFITRELGLK--LMPTSPADYIPRFCAALGLSGEVQKKAIEIIKKA 263
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315
+ + R P ++AAA+Y+A L +R+TQ E+ +V G+TEVT+R YKEL E
Sbjct: 264 EERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVTEVTIRNRYKELAEK 319
>gi|115702419|ref|XP_796335.2| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 321
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 115/214 (53%), Gaps = 5/214 (2%)
Query: 118 SSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEAL 177
S S S+++ +++ A+ +I +A + L I D A LF+ LR RS +A+
Sbjct: 108 SKSNMSSTNRTLIN---AFREIGAMADRINLPKTIVDRAHTLFKQVNDQRTLRGRSNDAI 164
Query: 178 ATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPR 237
A A L A R+ PRT +EI + V ++EIG+ K++ +AL+ + + + M R
Sbjct: 165 AAACLYIACRQEGVPRTFKEICAVSRVNKREIGRCFKLILKALETNVVLITT--GDFMSR 222
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC+ L L Q ATHI R+PIS++AAAIY+A Q +++++Q EI ++
Sbjct: 223 FCSNLSLPPKVQRAATHIARKADELDLVAGRSPISVTAAAIYMASQASEEKRSQKEIGEI 282
Query: 298 TGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPE 331
G+ +VT+R+ YK + DL P ++ A E
Sbjct: 283 AGVADVTIRQSYKLIYPKSHDLFPQDFQFATKIE 316
>gi|17136758|ref|NP_476888.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|442627311|ref|NP_001260349.1| transcription factor IIB, isoform B [Drosophila melanogaster]
gi|194761835|ref|XP_001963128.1| GF15790 [Drosophila ananassae]
gi|194859971|ref|XP_001969489.1| GG10133 [Drosophila erecta]
gi|195146744|ref|XP_002014344.1| GL19146 [Drosophila persimilis]
gi|195434140|ref|XP_002065061.1| GK14874 [Drosophila willistoni]
gi|195578215|ref|XP_002078961.1| GD23702 [Drosophila simulans]
gi|135628|sp|P29052.1|TF2B_DROME RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|158538|gb|AAA28929.1| RNA polymerase II transcription factor [Drosophila melanogaster]
gi|158540|gb|AAA28930.1| transcription factor IIB [Drosophila melanogaster]
gi|414282|gb|AAA68626.1| transcription factor IIB [Drosophila melanogaster]
gi|1016268|gb|AAA79093.1| transcription factor IIB [Drosophila melanogaster]
gi|7297699|gb|AAF52951.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|41058137|gb|AAR99117.1| RE29729p [Drosophila melanogaster]
gi|51092169|gb|AAT94498.1| LD24035p [Drosophila melanogaster]
gi|190616825|gb|EDV32349.1| GF15790 [Drosophila ananassae]
gi|190661356|gb|EDV58548.1| GG10133 [Drosophila erecta]
gi|194106297|gb|EDW28340.1| GL19146 [Drosophila persimilis]
gi|194161146|gb|EDW76047.1| GK14874 [Drosophila willistoni]
gi|194190970|gb|EDX04546.1| GD23702 [Drosophila simulans]
gi|220953484|gb|ACL89285.1| TfIIB-PA [synthetic construct]
gi|440213669|gb|AGB92884.1| transcription factor IIB, isoform B [Drosophila melanogaster]
Length = 315
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 114 ISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 173
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL+ S ++ + A M RFC L L Q A
Sbjct: 174 RTFKEICAVSKISKKEIGRCFKLTLKALETS--VDLITTADFMCRFCANLDLPNMVQRAA 231
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 232 THIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLM 291
Query: 313 LENWDDLLPSNYTPAVP 329
+ L P ++ P
Sbjct: 292 YPHAAKLFPEDFKFTTP 308
>gi|312379141|gb|EFR25512.1| hypothetical protein AND_09086 [Anopheles darlingi]
Length = 338
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 107/204 (52%), Gaps = 2/204 (0%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 137 IAAFKEISTMADRINLPKTITDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 196
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL S ++ + A M RFC L L Q A
Sbjct: 197 RTFKEICAVSKISKKEIGRCFKLTLKALATS--VDLITTADFMSRFCANLDLPNVVQRAA 254
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + R+PIS++AAAIY+A Q + +KT EI + G+ +VT+R+ Y+ +
Sbjct: 255 THIARKAVEMDIVPGRSPISVAAAAIYMASQASNNKKTHKEIGDIAGVADVTIRQSYRLM 314
Query: 313 LENWDDLLPSNYTPAVPPEKAFPT 336
+ +L P ++ P ++ P
Sbjct: 315 YPHASELFPEDFNFFTPIDQLPPV 338
>gi|195118790|ref|XP_002003919.1| GI20422 [Drosophila mojavensis]
gi|195384910|ref|XP_002051155.1| TfIIB [Drosophila virilis]
gi|193914494|gb|EDW13361.1| GI20422 [Drosophila mojavensis]
gi|194147612|gb|EDW63310.1| TfIIB [Drosophila virilis]
Length = 315
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 114 ISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 173
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL+ S ++ + A M RFC L L Q A
Sbjct: 174 RTFKEICAVSKISKKEIGRCFKLTLKALETS--VDLITTADFMCRFCANLDLPNMVQRAA 231
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 232 THIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLM 291
Query: 313 LENWDDLLPSNYTPAVP 329
+ L P ++ P
Sbjct: 292 YPHAAKLFPEDFKFTTP 308
>gi|198475810|ref|XP_002132499.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
gi|198137970|gb|EDY69901.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
Length = 314
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 113 ISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 172
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL+ S ++ + A M RFC L L Q A
Sbjct: 173 RTFKEICAVSKISKKEIGRCFKLTLKALETS--VDLITTADFMCRFCANLDLPNMVQRAA 230
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 231 THIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLM 290
Query: 313 LENWDDLLPSNYTPAVP 329
+ L P ++ P
Sbjct: 291 YPHAAKLFPEDFKFTTP 307
>gi|296109616|ref|YP_003616565.1| transcription factor TFIIB cyclin-related protein
[methanocaldococcus infernus ME]
gi|295434430|gb|ADG13601.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus infernus ME]
Length = 320
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL + +HA L+R+ +R RS+E + A + A R+ +
Sbjct: 131 NLAFALSELDRIASKLGLPKHVKEHASLLYREAVRKGLIRGRSIEGVVAATIYAACRKYR 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + L L++ + PI+ ++PRF + L L
Sbjct: 191 VPRTLDEIAEVSRVDKKEIGRTYRFLARELKIKLAPTNPID------YVPRFASELGLPG 244
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + K + R P ++AAAIY+A L R+TQ E+ +V G+TEVT+R
Sbjct: 245 EVESKAIQILKKAAEKGLTSGRGPTGVAAAAIYIASVLLGHRRTQREVAEVAGVTEVTIR 304
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 305 NRYKELTEHLD 315
>gi|195339829|ref|XP_002036519.1| GM18405 [Drosophila sechellia]
gi|194130399|gb|EDW52442.1| GM18405 [Drosophila sechellia]
Length = 315
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 114 ISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 173
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL+ S ++ + A M RFC L L Q A
Sbjct: 174 RTFKEICAVSKISKKEIGRCFKLTLKALETS--VDLITTADFMCRFCANLDLPNMVQRAA 231
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 232 THIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLM 291
Query: 313 LENWDDLLPSNYTPAVP 329
+ L P ++ P
Sbjct: 292 YPHAAKLFPEHFEFTTP 308
>gi|170594171|ref|XP_001901837.1| Transcription initiation factor IIB [Brugia malayi]
gi|158590781|gb|EDP29396.1| Transcription initiation factor IIB, putative [Brugia malayi]
Length = 309
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 2/186 (1%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I ++++ + L I D A ++F+D + LR ++ EA A A L A R+ PRT +EI
Sbjct: 114 IREMSARIHLPKSIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEI 173
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEV 258
A+ V +KEIG+ K++ ++L+ S + + A M RFC L L S Q AT I +
Sbjct: 174 CAASRVSKKEIGRCFKLIIKSLETS--LEQITSADFMSRFCGNLGLPHSIQAAATRIAKK 231
Query: 259 VINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318
+ R+PISI+AAAIY+A Q +KT EI ++ G EVT+++ YK L +
Sbjct: 232 AVELDLVAGRSPISIAAAAIYMASQASSNKKTAKEIGEIAGAAEVTVKQTYKLLYPRAGE 291
Query: 319 LLPSNY 324
L P ++
Sbjct: 292 LFPEDF 297
>gi|21363041|sp|Q9NHP7.1|TF2B_DROVI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|8050578|gb|AAF71709.1| transcription factor TFIIB [Drosophila virilis]
Length = 293
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 92 ISAFKEISSMADRINLPKTIVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 151
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL+ S ++ + A M RFC L L Q A
Sbjct: 152 RTFKEICAVSKISKKEIGRCFKLTLKALETS--VDLITTADFMCRFCANLDLPNMVQRAA 209
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 210 THIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLM 269
Query: 313 LENWDDLLPSNYTPAVP 329
+ L P ++ P
Sbjct: 270 YPHAAKLFPEDFKFTTP 286
>gi|341901067|gb|EGT57002.1| hypothetical protein CAEBREN_14440 [Caenorhabditis brenneri]
Length = 306
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 3/199 (1%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I +++ + L +I ++A ++F+D + LR ++ EA A A L A R+ PRT +EI
Sbjct: 111 IREMSERIHLPRNIQENASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEI 170
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEV 258
+ V +KEIG+ KI+ L+ + + + A M RFC L L S Q AT I +
Sbjct: 171 CAVSRVSKKEIGRCFKIIIRNLETN--LEQITSADFMSRFCGNLYLPNSIQAAATRIAKR 228
Query: 259 VINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318
++ R PISI+AAAIY+A Q ++++ EI V G E+T+R+ YK L D+
Sbjct: 229 AVDMDLVAGRTPISIAAAAIYMASQASSEKRSAKEIGDVAGAAEITVRQTYKLLYPKADE 288
Query: 319 LLPSNYTPAVPPEKAFPTT 337
L P ++ V P A P +
Sbjct: 289 LFPEDFR-FVTPIDALPNS 306
>gi|195473679|ref|XP_002089120.1| GE18945 [Drosophila yakuba]
gi|194175221|gb|EDW88832.1| GE18945 [Drosophila yakuba]
Length = 315
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 114 ISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 173
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL+ S ++ + A M RFC L L Q A
Sbjct: 174 RTFKEICAVSKISKKEIGRCFKLTLKALETS--VDLITTADFMCRFCANLDLPNMVQRAA 231
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAIY+A Q + +++Q +I + G+ +VT+R+ YK +
Sbjct: 232 THIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKDIGDIAGVADVTIRQSYKLM 291
Query: 313 LENWDDLLPSNYTPAVP 329
+ L P ++ P
Sbjct: 292 YPHAAKLFPEDFKFTTP 308
>gi|449680698|ref|XP_002156994.2| PREDICTED: transcription initiation factor IIB-like, partial [Hydra
magnipapillata]
Length = 220
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 105/184 (57%), Gaps = 3/184 (1%)
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
D + QLF+ L+ RS +A+A+A L A R+ PRT +EI + +P+KEIG+
Sbjct: 40 DRSNQLFKQVHDQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAISKIPKKEIGRCF 99
Query: 214 KILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISI 273
K++ +AL+ S I ++ M RFC+ L L S Q AT+I + R+P+S+
Sbjct: 100 KLILKALEASVDIITSED--FMSRFCSNLSLPASVQRAATYIARRAMELDLVPGRSPVSV 157
Query: 274 SAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKA 333
+AAAIYLA Q +K+Q +I + G+ +VT+R+ Y+ L+ DL P ++ P ++
Sbjct: 158 AAAAIYLASQASLDKKSQKDIGDIAGVADVTIRQSYRSLVVRAADLFPPDFVFHTPIDR- 216
Query: 334 FPTT 337
PT+
Sbjct: 217 LPTS 220
>gi|393912489|gb|EJD76760.1| hypothetical protein LOAG_16340 [Loa loa]
Length = 453
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 2/186 (1%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I ++++ + L I D A ++F+D + LR ++ EA A A L A R+ PRT +EI
Sbjct: 258 IREMSARIHLPKSIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEI 317
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEV 258
A+ V +KEIG+ K++ ++L+ S + + A M RFC L L S Q AT I +
Sbjct: 318 CAASRVSKKEIGRCFKLIIKSLETS--LEQITSADFMSRFCGNLGLPHSIQAAATRIAKK 375
Query: 259 VINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318
+ R+PISI+AAAIY+A Q +KT EI ++ G EVT+++ YK L +
Sbjct: 376 AVELDLVAGRSPISIAAAAIYMASQASSNKKTAKEIGEIAGAAEVTVKQTYKLLYPRAAE 435
Query: 319 LLPSNY 324
L P ++
Sbjct: 436 LFPDDF 441
>gi|281203102|gb|EFA77303.1| transcription initiation factor IIB [Polysphondylium pallidum
PN500]
Length = 344
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 108/194 (55%), Gaps = 5/194 (2%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L + +I +A +GL + D A +LFR+ ++ RS + + A+L A R
Sbjct: 140 LAGFKEIARMADHMGLPQTVQDTANELFREMDDKKSMKGRSADGILAASLYIACRIEGIT 199
Query: 193 RTLQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH--MPRFCTLLQLNKSAQ 249
RT +EI +++ NV +K++G+ K++ EAL + IN +I+ M RFCT L L +
Sbjct: 200 RTFKEICALSNNVSKKDLGRCYKMMKEAL--ANRINLQAISTEDFMTRFCTNLNLPLDVK 257
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A H+ + +NPIS++AA+IY+ QL +++TQ I ++G++EVT+R Y
Sbjct: 258 RAAEHVSRTAMELGIVAGKNPISVAAASIYMVSQLSPEKRTQKMISDISGVSEVTIRNAY 317
Query: 310 KELLENWDDLLPSN 323
K+L + LLP N
Sbjct: 318 KDLYIKREQLLPPN 331
>gi|312087211|ref|XP_003145382.1| transcription initiation factor IIB [Loa loa]
Length = 312
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 2/186 (1%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I ++++ + L I D A ++F+D + LR ++ EA A A L A R+ PRT +EI
Sbjct: 117 IREMSARIHLPKSIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEI 176
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEV 258
A+ V +KEIG+ K++ ++L+ S + + A M RFC L L S Q AT I +
Sbjct: 177 CAASRVSKKEIGRCFKLIIKSLETS--LEQITSADFMSRFCGNLGLPHSIQAAATRIAKK 234
Query: 259 VINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318
+ R+PISI+AAAIY+A Q +KT EI ++ G EVT+++ YK L +
Sbjct: 235 AVELDLVAGRSPISIAAAAIYMASQASSNKKTAKEIGEIAGAAEVTVKQTYKLLYPRAAE 294
Query: 319 LLPSNY 324
L P ++
Sbjct: 295 LFPDDF 300
>gi|268565685|ref|XP_002647378.1| C. briggsae CBR-TTB-1 protein [Caenorhabditis briggsae]
Length = 306
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 3/199 (1%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I +++ + L +I D+A ++F+D + LR ++ EA A A L A R+ PRT +EI
Sbjct: 111 IREMSERIHLPRNIQDNASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEI 170
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEV 258
+ V +KEIG+ KI+ L+ + + + A M RFC L L S Q AT I +
Sbjct: 171 CAVSRVSKKEIGRCFKIIIRNLETN--LEQITSADFMSRFCGNLYLPNSIQAAATRIAKR 228
Query: 259 VINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318
++ R PISI+AAAIY+A Q ++++ EI V G E+T+R+ YK L +
Sbjct: 229 AVDMDLVAGRTPISIAAAAIYMASQASGEKRSAKEIGDVAGAAEITVRQTYKLLYPKAAE 288
Query: 319 LLPSNYTPAVPPEKAFPTT 337
L P ++ P E A P +
Sbjct: 289 LFPEDFRFVTPIE-ALPNS 306
>gi|324511266|gb|ADY44696.1| Transcription initiation factor IIB [Ascaris suum]
Length = 211
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 110/190 (57%), Gaps = 4/190 (2%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I ++++ + L I D+A ++FRD + L+ ++ EA A A L A R+ PRT +EI
Sbjct: 15 IREMSARIHLSKSIEDNAAKVFRDVLDSKALKGKNNEAQAAACLYIACRKEGVPRTFKEI 74
Query: 199 SIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
A+ V +KEIG+ K++ ++L+ + + I S A M RFC L L+ S Q AT I +
Sbjct: 75 CAASRVSKKEIGRCFKLIIKSLETNLEQITS---ADFMSRFCGNLGLSHSIQAAATRIAK 131
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ R+PISI+AAAIY+A Q +++KT EI ++ G EVT+++ Y+ L
Sbjct: 132 KAVELDLVAGRSPISIAAAAIYMASQASNEKKTAKEIGEIAGAAEVTVKQTYRLLHPRAK 191
Query: 318 DLLPSNYTPA 327
+L P ++ A
Sbjct: 192 ELFPEDFKFA 201
>gi|308506715|ref|XP_003115540.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
gi|308256075|gb|EFP00028.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
Length = 306
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 102/186 (54%), Gaps = 2/186 (1%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I +++ + L +I + AF++F++ + LR +++EA A A L A R+ PRT +EI
Sbjct: 111 IREMSERVHLPRNIQESAFRMFKEVLDSGVLRGKNIEAQAAACLYIACRQDGVPRTFKEI 170
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEV 258
+ V +KEIG+ KI+ S + + A M RFC L L S Q AT I +
Sbjct: 171 CAISRVSKKEIGRCFKII--VRNSSTNLEHVTSADFMSRFCGNLYLPNSIQAAATRIAKR 228
Query: 259 VINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318
++ R+PISI+AAAIY+A Q +++T EI + G EVT+R+ YK L +
Sbjct: 229 AVDMDLVAGRSPISIAAAAIYMASQASAEKRTAKEIGDIAGAAEVTIRQTYKLLYPKAAE 288
Query: 319 LLPSNY 324
L P ++
Sbjct: 289 LFPEDF 294
>gi|71394065|gb|AAZ32104.1| archaeal transcriptional initiation factor TFB [uncultured
euryarchaeote Alv-FOS5]
Length = 474
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 106/191 (55%), Gaps = 2/191 (1%)
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
+S +SS+ + A + ++S LGL +I + A L+R +R R +E++ A
Sbjct: 275 SSIASSIERNLTIAMGDLERISSYLGLPSNIREAAALLYRKAVEKGLIRGRLIESVVAAV 334
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTL 241
+ R+ PRTL EIS + + +KEIG+ + L + L + P+ +N I ++PRF +
Sbjct: 335 IYMICRQYGIPRTLDEISEVSGITKKEIGRTYRFLKKELYVDVPL-TNPI-YYVPRFASA 392
Query: 242 LQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 301
L L+ Q A I + K + R P ++AAA+Y+A + +R+TQ E+ +V G+T
Sbjct: 393 LGLSGKVQEKAKEILNEAVEKGLISGRGPTGVAAAAVYIASVMMGERRTQKEVAEVAGVT 452
Query: 302 EVTLRKVYKEL 312
EVT+R Y+EL
Sbjct: 453 EVTIRNRYREL 463
>gi|195051163|ref|XP_001993045.1| GH13607 [Drosophila grimshawi]
gi|193900104|gb|EDV98970.1| GH13607 [Drosophila grimshawi]
Length = 315
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A ++A L A R+ P
Sbjct: 114 ISAFKEISLMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKSSACLYIACRQEGVP 173
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL+ S ++ + A M RFC L L Q A
Sbjct: 174 RTFKEICAVSKISKKEIGRCFKLTLKALETS--VDLITTADFMCRFCANLDLPNMVQRAA 231
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 232 THIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLM 291
Query: 313 LENWDDLLPSNYTPAVP 329
+ L P ++ P
Sbjct: 292 YPHAAKLFPEDFKFTTP 308
>gi|17564892|ref|NP_503146.1| Protein TTB-1 [Caenorhabditis elegans]
gi|21362986|sp|O16991.2|TF2B_CAEEL RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|351051072|emb|CCD74279.1| Protein TTB-1 [Caenorhabditis elegans]
Length = 306
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 3/199 (1%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I +++ + L +I D A ++F+D + LR ++ EA A A L A R+ PRT +EI
Sbjct: 111 IREMSERIHLPRNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEI 170
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEV 258
+ V +KEIG+ KI+ +L+ + + + A M RFC L L S Q AT I +
Sbjct: 171 CAVSRVSKKEIGRCFKIIVRSLETN--LEQITSADFMSRFCGNLSLPNSIQAAATRIAKC 228
Query: 259 VINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318
++ R PISI+AAAIY+A Q ++++ EI V G E+T+R+ YK L +
Sbjct: 229 AVDMDLVAGRTPISIAAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKLLYPKALE 288
Query: 319 LLPSNYTPAVPPEKAFPTT 337
L P ++ V P A P +
Sbjct: 289 LFPKDFR-FVTPIDALPNS 306
>gi|321478592|gb|EFX89549.1| hypothetical protein DAPPUDRAFT_303055 [Daphnia pulex]
Length = 311
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 111/204 (54%), Gaps = 5/204 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S +++ A+ +I ++A + L I D A LF+ L+ S +A A+A
Sbjct: 103 TMSSSDRTLVN---AFKEISNMADRINLPRTIVDRANLLFKSVHDGKNLKGHSTDASASA 159
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S I S MPRFC+
Sbjct: 160 CLYIACRQEGVPRTFKEICAVSKIGKKEIGRCFKLILKALETSVEIIKTS--DFMPRFCS 217
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L Q A+HIG + R+PIS++AAAIY+A + + T+ EI + G+
Sbjct: 218 NLGLPAIVQRNASHIGGKAVELDVVPGRSPISVAAAAIYMASHASENKLTKKEIGDIAGV 277
Query: 301 TEVTLRKVYKELLENWDDLLPSNY 324
+VT+R+ Y+ + +L PS++
Sbjct: 278 ADVTIRQSYELMYPRAAELFPSDF 301
>gi|402594223|gb|EJW88149.1| transcription initiation factor IIB [Wuchereria bancrofti]
Length = 210
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 4/187 (2%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I ++++ + L I D A ++F+D + LR ++ EA A A L A R+ PRT +EI
Sbjct: 15 IREMSARIHLPKSIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEI 74
Query: 199 SIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
A+ V +KEIG+ K++ ++L+ S + I S A M RFC L L S Q AT I +
Sbjct: 75 CAASRVSKKEIGRCFKLIIKSLETSLEQITS---ADFMSRFCGNLGLPHSIQAAATRIAK 131
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ R+PISI+AAAIY+A Q +KT EI ++ G EVT+++ YK L
Sbjct: 132 KAVELDLVAGRSPISIAAAAIYMASQASSNKKTAKEIGEIAGAAEVTVKQTYKLLYPRAG 191
Query: 318 DLLPSNY 324
+L P ++
Sbjct: 192 ELFPEDF 198
>gi|325960055|ref|YP_004291521.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325331487|gb|ADZ10549.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 331
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R+ +R RS+E + A+L A R PRTL EI+ +
Sbjct: 154 SSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEVS 213
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ Q A I E + K
Sbjct: 214 RVSKKEVGRTYRFLTRELNIKLP--PTSPVDYVPRFASELNLSGEVQSKAIEIIEKAMEK 271
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ R P ++AAA+Y+A L +RKTQ ++ + G+TEVT+R YKEL E D
Sbjct: 272 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQLD 326
>gi|410720379|ref|ZP_11359735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
gi|410601161|gb|EKQ55681.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
Length = 340
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R+ +R RS+E + A+L A R PRTL EI+ +
Sbjct: 163 SSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEVS 222
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ Q A I E + K
Sbjct: 223 RVSKKEVGRTYRFLTRELNIKLP--PTSPVDYVPRFASELNLSGEVQSKAIEIIEKAMEK 280
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ R P ++AAA+Y+A L +RKTQ ++ + G+TEVT+R YKEL E D
Sbjct: 281 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQLD 335
>gi|288559971|ref|YP_003423457.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
gi|288542681|gb|ADC46565.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
Length = 264
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R +R RS+E + A+L A R+ + PRTL EI+ +
Sbjct: 87 SSRLGLPRSVREAASVIYRSAVENKLIRGRSIEGVVAASLYAACRQCKVPRTLDEIAEVS 146
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ Q + I E + K
Sbjct: 147 RVSKKEVGRTYRFLTRELHIKLP--PTSPVDYVPRFASELGLSGEVQSRSIEIIEKAMEK 204
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ R P ++AAA+Y+A L +RKTQ ++ V G+TEVT+R YKEL E
Sbjct: 205 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADVAGVTEVTIRNRYKELTE 256
>gi|408382816|ref|ZP_11180358.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
gi|407814618|gb|EKF85243.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
Length = 307
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R+ +R RS+E + A+L A R PRTL EI+ +
Sbjct: 130 SSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEVS 189
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ Q A I E + K
Sbjct: 190 RVSKKEVGRTYRFLTRELNIKLP--PTSPVDYVPRFASELNLSGEVQSKAIEIIEKAMEK 247
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ R P ++AAA+Y+A L +RKTQ ++ + G+TEVT+R YKEL E D
Sbjct: 248 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQLD 302
>gi|88603722|ref|YP_503900.1| transcription initiation factor IIB [Methanospirillum hungatei
JF-1]
gi|88189184|gb|ABD42181.1| Transcription initiation factor IIB (TFIIB) [Methanospirillum
hungatei JF-1]
Length = 337
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ + A ++RD +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ LQL
Sbjct: 208 VPRTLDEIAEVSRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLQLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q A I + + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R
Sbjct: 262 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEKLD 332
>gi|308507101|ref|XP_003115733.1| CRE-TTB-1 protein [Caenorhabditis remanei]
gi|308256268|gb|EFP00221.1| CRE-TTB-1 protein [Caenorhabditis remanei]
Length = 306
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 3/199 (1%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I +++ + L +I ++A ++F+D + LR ++ EA A A L A R+ PRT +EI
Sbjct: 111 IREMSERIHLPRNIQENASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEI 170
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEV 258
+ V +KEIG+ KI+ L+ + + + A M RFC L L S Q AT I +
Sbjct: 171 CAVSRVSKKEIGRCFKIIIRNLETN--LEQITSADFMSRFCGNLYLPNSIQAAATRIAKR 228
Query: 259 VINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318
++ R PISI+AAAIY+A Q ++++ EI V G E+T+R+ YK L +
Sbjct: 229 AVDMDLVAGRTPISIAAAAIYMASQASGEKRSAKEIGDVAGAAEITVRQTYKLLYPKAAE 288
Query: 319 LLPSNYTPAVPPEKAFPTT 337
L P ++ V P A P +
Sbjct: 289 LFPEDFR-FVTPIDALPNS 306
>gi|330793157|ref|XP_003284652.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
gi|325085451|gb|EGC38858.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
Length = 353
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I +A + L + D A +LFR + RSV+ + AAL A R+
Sbjct: 147 LAAFKEIGRMADHMNLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLS 206
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI+ NVP+KEI + KI+ E + + S RFC+ L+L + ++
Sbjct: 207 RTFKEIAALTNVPKKEISRCYKIMKETFSSVLNLQTISTEDFTSRFCSTLKLPIEVKKIS 266
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQL----EDKRKTQAEICKVTGLTEVTLRKV 308
H+ + ++ ++PIS++AA+IY+ QL +DKR TQ +I +++G+++VT+R
Sbjct: 267 EHVSKTAMDMGIVAGKSPISVTAASIYMVSQLLPNPQDKR-TQKQIAEISGVSDVTIRNA 325
Query: 309 YKELLENWDDLLPSNYTPAVPPEKAFPT 336
YK+L + L+P + +P + PT
Sbjct: 326 YKDLYAKREVLIPQD-SPYFQYINSLPT 352
>gi|148642484|ref|YP_001272997.1| transcription initiation factor IIB [Methanobrevibacter smithii
ATCC 35061]
gi|222446016|ref|ZP_03608531.1| hypothetical protein METSMIALI_01665 [Methanobrevibacter smithii
DSM 2375]
gi|261349445|ref|ZP_05974862.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
gi|189029858|sp|A5UKA1.1|TF2B_METS3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|148551501|gb|ABQ86629.1| transcription initiation factor TFIIB (zinc-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|222435581|gb|EEE42746.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2375]
gi|288861808|gb|EFC94106.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
Length = 310
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R +R RS+E + A+L A R PRTL EI+ +
Sbjct: 133 SSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEVS 192
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ AQ A I E + K
Sbjct: 193 RVTKKEVGRTYRFLTRELNIKLP--PTSPVDYVPRFASELGLSGEAQSRAIEIIEKAMEK 250
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ R P ++AAA+Y+A L +RKTQ ++ + G+TEVT+R YKEL E
Sbjct: 251 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTE 302
>gi|261402160|ref|YP_003246384.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
gi|261369153|gb|ACX71902.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
Length = 666
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 135/286 (47%), Gaps = 28/286 (9%)
Query: 54 LVTSD-----LPSIPQPQQNDGVDEDPFQPTG--FITAFSAWSL--------VPSPLFLR 98
L+ SD + I + + +G D P FI F + L + + + R
Sbjct: 382 LINSDFIFLKIKKINKVEPTNGYAYDLTVPNAENFIAGFGGFVLHNTIHDKGLSTVIDWR 441
Query: 99 SSHSFSGQLAELERT--FELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDH 155
+ S+ L+ +R + L S NL L +D + S LGL + ++
Sbjct: 442 NKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLPRHVREN 501
Query: 156 AFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKI 215
A ++R+ +R RS+E + AA+ A R + PRTL EI+ A+ V +KEIG+ +
Sbjct: 502 AAIIYRNAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRF 561
Query: 216 LGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPI 271
L L + + PI+ ++PRF + L L + A I + K + R P
Sbjct: 562 LARELNIKLTPTNPID------YVPRFASELGLPGEVESKAIQILQQATEKGLTSGRGPT 615
Query: 272 SISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
++AAAIY+A L R+TQ E+ +V G+TEVT+R YKEL E+ D
Sbjct: 616 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKELTEHLD 661
>gi|333986561|ref|YP_004519168.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
gi|333824705|gb|AEG17367.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
Length = 340
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R+ +R RS+E + A+L A R PRTL EI+ +
Sbjct: 163 SSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEVS 222
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ Q A I E + K
Sbjct: 223 RVTKKEVGRTYRFLTRELNIKLP--PTSPVDYVPRFASELGLSGEVQSKAIDIIEQAMAK 280
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ R P ++AAA+Y+A L +RKTQ ++ + G+TEVT+R YKEL E D
Sbjct: 281 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQLD 335
>gi|385805988|ref|YP_005842386.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
gi|383795851|gb|AFH42934.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
Length = 316
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 119/214 (55%), Gaps = 6/214 (2%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSV---MMDNLRAYLQIID-VASILGLDYDICDHAFQL 159
SG+ E ++ E L S + + NL + +D +++ L L+ + + A +
Sbjct: 94 SGKKLEPKKRLEFLRYRKWQIRSRIQSSIDRNLAQAMNELDRLSNQLHLNRAVREEAAVI 153
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R +R RS+E++ A++ A R + PRTL EIS+ +KEI + ++L +
Sbjct: 154 YRKAVEKGLVRGRSIESVIAASVYVACRLKKLPRTLDEISLHTRANRKEIARCYRLLVKE 213
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
LQL PI ++ I ++PR +LL L+ A +A I ++ K ++P ++AAAIY
Sbjct: 214 LQLKVPI-ADPID-YIPRMGSLLDLSGKAMNIAARIVKIAKQKALTAGKDPAGLAAAAIY 271
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKELL 313
+A LE++++TQ EI + G+TEVT+R YKEL+
Sbjct: 272 VATLLENEKRTQKEIANIAGVTEVTVRNRYKELV 305
>gi|374630349|ref|ZP_09702734.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
gi|373908462|gb|EHQ36566.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
Length = 335
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ + A ++RD +R RS+E +A AAL A R+
Sbjct: 146 NLAFALSELDRMASALGLPRNVRETAAVVYRDAVEKNLIRGRSIEGVAAAALYAACRQCN 205
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 206 VPRTLDEIAEVSRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLTLKG 259
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q A I K + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R
Sbjct: 260 EVQSRAVEILRQAGEKELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 319
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 320 NRYKELAEKLD 330
>gi|443732672|gb|ELU17299.1| hypothetical protein CAPTEDRAFT_167658 [Capitella teleta]
Length = 285
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 10/234 (4%)
Query: 102 SFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFR 161
SF Q + R ++SS S + A+ +I ++ L L I D A LF+
Sbjct: 61 SFDDQGKPVYRNRRQMNSSDRSM--------VNAFKEINQMSDRLNLPRMIMDRANTLFK 112
Query: 162 DCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQ 221
L+ RS +A+A+A L A R+ Q PRT +EI + + +KEIG+ K++ + L+
Sbjct: 113 QVHEGKSLKGRSNDAIASACLYIACRQEQVPRTFKEICAVSKISKKEIGRAFKLILKNLE 172
Query: 222 LSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLA 281
S + + M RFC+ L L Q ATHI ++ R+PISI+AAAIY+A
Sbjct: 173 TS--VELITTGDFMSRFCSNLGLPSVVQRAATHIARKAVDLDLVPGRSPISIAAAAIYMA 230
Query: 282 CQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFP 335
+K+ EI + G+ EVT+R+ YK + L P ++ A P ++ P
Sbjct: 231 SSASSDKKSAKEIGDIAGVAEVTIRESYKRMYPKAHALFPEDFKFATPVDQLPP 284
>gi|395646538|ref|ZP_10434398.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
gi|395443278|gb|EJG08035.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
Length = 336
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ + A ++RD +R RS+E +A AAL A R+
Sbjct: 147 NLAFALSELDRMASALGLPRNVRETAAVIYRDAVDKNLIRGRSIEGVAAAALYAACRQCS 206
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 207 VPRTLDEIAEVSRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLTLKG 260
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q A I + + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R
Sbjct: 261 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREVAEVAGVTEVTIR 320
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 321 NRYKELAEKLD 331
>gi|315230585|ref|YP_004071021.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183613|gb|ADT83798.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 306
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 111/221 (50%), Gaps = 13/221 (5%)
Query: 100 SHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQ 158
H SG + + + L S NL L +D +AS LGL +I + A
Sbjct: 87 GHDISGTMRA--KMYRLRKWQRRIRVSDAAERNLAFALSELDRMASQLGLPRNIKEMAAA 144
Query: 159 LFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGE 218
L+R +R RS+E + A L A R A+ PRTL EI A V +KEIG+ + +
Sbjct: 145 LYRKAVMERLIRGRSIEGVTAACLYAACRMAKVPRTLDEIEEVARVDKKEIGRSYRFIAR 204
Query: 219 ALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISIS 274
L L + PI+ ++ RF L L++ + A I + I + R P+ ++
Sbjct: 205 ELHLRLTPTSPID------YVSRFADQLGLSERTKNRAVKILQKAIKLGLTSGRGPMGVA 258
Query: 275 AAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315
AAA+Y+A LE ++KTQ E+ +V +TEVT+R YKEL+E
Sbjct: 259 AAALYIASVLEGEKKTQREVAEVAHVTEVTVRNRYKELVER 299
>gi|291333316|gb|ADD93023.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S04-C246]
Length = 308
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 112/216 (51%), Gaps = 7/216 (3%)
Query: 100 SHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQL 159
S + Q + R ++ S + +T ++ M A ++ +AS L L I + A
Sbjct: 93 SSRYRSQFYRM-RKWQKRSRVSNATERNLAM----ALAELDRMASRLDLPKSIREAAAVN 147
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
++ A +R RS+E +A A+L A R+ PRTL EI A+ +KEIG+ + +
Sbjct: 148 YKKAVEARLIRGRSIEGVAAASLYAACRQCSNPRTLDEIGEASRTGRKEIGRTYRFMVRE 207
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L++ P ++PRFC+ L L+ Q A + + + R P I+A+ IY
Sbjct: 208 LKMKIP--PTKPEDYIPRFCSGLDLDAEVQAKAYELIAAAQERELTSGRGPTGIAASIIY 265
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315
+A L KR+TQ E+ +V G+TEVT+R YKEL++N
Sbjct: 266 IASVLCGKRRTQREVAEVAGVTEVTIRNRYKELIQN 301
>gi|15678905|ref|NP_276022.1| transcription initiation factor IIB [Methanothermobacter
thermautotrophicus str. Delta H]
gi|14195233|sp|O26971.1|TF2B_METTH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2621979|gb|AAB85383.1| transcription initiation factor TFIIB [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 310
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R +R RS+E + A+L A R+ PRTL EI+ +
Sbjct: 133 SSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAEVS 192
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ Q A I E+ +
Sbjct: 193 RVSKKEVGRTYRFLTRELNIKLP--PTSPVDYVPRFASELGLSGEVQSKAIEIIEMAMEN 250
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ R P ++AAA+Y+A L + KTQ ++ +V G+TEVT+R YKEL E D
Sbjct: 251 GLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYKELTEQLD 305
>gi|126178423|ref|YP_001046388.1| transcription initiation factor IIB [Methanoculleus marisnigri JR1]
gi|189029857|sp|A3CSQ6.1|TF2B_METMJ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|125861217|gb|ABN56406.1| Transcription initiation factor IIB (TFIIB) [Methanoculleus
marisnigri JR1]
Length = 337
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ + A ++RD +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIAEVSRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLNLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q A I + + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R
Sbjct: 262 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEKLD 332
>gi|307354313|ref|YP_003895364.1| transcription factor TFIIB cyclin-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157546|gb|ADN36926.1| Transcription factor TFIIB cyclin-related protein [Methanoplanus
petrolearius DSM 11571]
Length = 335
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 100/180 (55%), Gaps = 10/180 (5%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+AS LGL ++ + A ++RD +R RS+E +A AAL A R+ PRTL EI+
Sbjct: 157 MASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEV 216
Query: 202 ANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
+ V +KEIG+ + + L L + PI+ ++PRFC+ L L Q A I
Sbjct: 217 SRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLNLKGEVQSRAVEILR 270
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R YKEL E D
Sbjct: 271 QAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKELAEKLD 330
>gi|219851004|ref|YP_002465436.1| transcription initiation factor IIB [Methanosphaerula palustris
E1-9c]
gi|254784087|sp|B8GJQ9.1|TF2B_METPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|219545263|gb|ACL15713.1| Transcription factor TFIIB cyclin-related [Methanosphaerula
palustris E1-9c]
Length = 334
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 100/180 (55%), Gaps = 10/180 (5%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+AS LGL ++ + A ++RD +R RS+E +A AAL A R+ PRTL EI+
Sbjct: 156 MASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEV 215
Query: 202 ANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
+ V +KEIG+ + + L L + PI+ ++PRFC+ L L Q A I
Sbjct: 216 SRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLTLKGEVQSRAVEILR 269
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R YKEL E D
Sbjct: 270 QAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKELAEKLD 329
>gi|397779601|ref|YP_006544074.1| transcription initiation factor IIB [Methanoculleus bourgensis MS2]
gi|396938103|emb|CCJ35358.1| Transcription initiation factor IIB Short=TFIIB [Methanoculleus
bourgensis MS2]
Length = 337
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ + A ++RD +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL E++ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEVAEVSRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLNLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q A I + + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R
Sbjct: 262 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEKLD 332
>gi|355572234|ref|ZP_09043416.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
gi|354824950|gb|EHF09189.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
Length = 338
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 100/180 (55%), Gaps = 10/180 (5%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+AS LGL ++ + A ++RD +R RS+E +A AAL A R+ PRTL EI+
Sbjct: 160 MASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEV 219
Query: 202 ANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
+ V +KEIG+ + + L L + PI+ ++PRFC+ L L Q A I
Sbjct: 220 SRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLNLKGEVQSRAVEILR 273
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R YKEL E D
Sbjct: 274 QAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKELAEKLD 333
>gi|154151850|ref|YP_001405468.1| transcription initiation factor IIB [Methanoregula boonei 6A8]
gi|189029854|sp|A7IAR4.1|TF2B_METB6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|154000402|gb|ABS56825.1| Transcription factor TFIIB, cyclin-related [Methanoregula boonei
6A8]
Length = 334
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ + A ++RD +R RS+E +A AAL A R+
Sbjct: 145 NLAFALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCS 204
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 205 VPRTLDEIAEVSRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLTLKG 258
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q A I + + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R
Sbjct: 259 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 318
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 319 NRYKELAEKLD 329
>gi|432329785|ref|YP_007247928.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
gi|432136494|gb|AGB01421.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
Length = 336
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ + A ++RD +R RS+E +A AAL A R+
Sbjct: 147 NLAFALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCS 206
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 207 VPRTLDEIAEVSRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLTLKG 260
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q A I + + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R
Sbjct: 261 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 320
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 321 NRYKELAEKLD 331
>gi|289192865|ref|YP_003458806.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
gi|288939315|gb|ADC70070.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
Length = 334
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 13/227 (5%)
Query: 98 RSSHSFSGQLAELERT--FELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICD 154
R+ S+ L+ +R + L S NL L +D + S LGL + +
Sbjct: 109 RNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLPRHVRE 168
Query: 155 HAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIK 214
+A ++R +R RS+E + AA+ A R + PRTL EI+ A+ V +KEIG+ +
Sbjct: 169 NAAIIYRGAVDKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR 228
Query: 215 ILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNP 270
L L + + PI+ ++PRF + L L + A I + K + R P
Sbjct: 229 FLARELNIKLTPTNPID------YVPRFASELGLPGEVESKAIQILQQAAEKGLTSGRGP 282
Query: 271 ISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
++AAAIY+A L R+TQ E+ +V G+TEVT+R YKEL E+ D
Sbjct: 283 TGVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKELTEHLD 329
>gi|256810972|ref|YP_003128341.1| transcription initiation factor IIB [Methanocaldococcus fervens
AG86]
gi|256794172|gb|ACV24841.1| Transcription factor TFIIB cyclin-related [Methanocaldococcus
fervens AG86]
Length = 331
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 13/227 (5%)
Query: 98 RSSHSFSGQLAELERT--FELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICD 154
R+ S+ L+ +R + L S NL L +D + S LGL + +
Sbjct: 106 RNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLPRHVRE 165
Query: 155 HAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIK 214
+A ++R +R RS+E + AA+ A R + PRTL EI+ A+ V +KEIG+ +
Sbjct: 166 NAAIIYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR 225
Query: 215 ILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNP 270
L L + + PI+ ++PRF + L L + A I + K + R P
Sbjct: 226 FLARELGIKLTPTNPID------YVPRFASELGLPGEVESKAIQILQQAAEKGLTSGRGP 279
Query: 271 ISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
++AAAIY+A L R+TQ E+ +V G+TEVT+R YKEL E+ D
Sbjct: 280 TGVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKELTEHLD 326
>gi|124486326|ref|YP_001030942.1| transcription initiation factor IIB [Methanocorpusculum labreanum
Z]
gi|124363867|gb|ABN07675.1| Transcription initiation factor IIB (TFIIB) [Methanocorpusculum
labreanum Z]
Length = 340
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 103/187 (55%), Gaps = 3/187 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ + A ++RD +R RS+E +A AAL A R+
Sbjct: 151 NLAFALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCN 210
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL EI+ + V +KEIG+ + + L L + S ++PRFC+ L L Q
Sbjct: 211 VPRTLDEIAEVSRVSRKEIGRTYRFISRELGL--KLLPTSPGDYVPRFCSGLGLKGEVQS 268
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I + + + R P ++AAAIY++ L +R+TQ E+ V G+TEVT+R YK
Sbjct: 269 RAMEILKQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREVADVAGVTEVTIRNRYK 328
Query: 311 ELLENWD 317
EL E D
Sbjct: 329 ELAEQLD 335
>gi|312136694|ref|YP_004004031.1| transcription initiation factor iib (tfiib) [Methanothermus
fervidus DSM 2088]
gi|311224413|gb|ADP77269.1| Transcription initiation factor IIB (TFIIB) [Methanothermus
fervidus DSM 2088]
Length = 307
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 3/182 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS L L + + A ++RD +R RS+E + AAL A R+
Sbjct: 118 NLAFALSELDRIASRLNLPRTVRETASVIYRDAVKKKLIRGRSIEEVVAAALYAACRKCN 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL EI+ + V +K +G+ + L L + P S ++PRF + L L+ Q
Sbjct: 178 VPRTLDEIAEVSGVKKKGVGRTYRFLARKLNIRLP--PTSPIDYVPRFASELGLSGKVQS 235
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I + + K + R P ++AAA+Y+A L +R+TQ EI +V G+TEVT+R Y+
Sbjct: 236 KAIEIIKKAMKKGLTSGRGPTGVAAAALYIASVLLRERRTQREIAEVAGITEVTIRNRYR 295
Query: 311 EL 312
EL
Sbjct: 296 EL 297
>gi|84490148|ref|YP_448380.1| transcription initiation factor IIB [Methanosphaera stadtmanae DSM
3091]
gi|121731831|sp|Q2NEL6.1|TF2B_METST RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|84373467|gb|ABC57737.1| transcription initiation factor IIB (TFIIB) [Methanosphaera
stadtmanae DSM 3091]
Length = 311
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R+ +R RS+E + A+L A R + PRTL EI+ +
Sbjct: 134 SSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIADVS 193
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ Q A I ++
Sbjct: 194 RVSKKEVGRTYRFLTRELHIRLP--PTSPIDYVPRFASELNLSGVVQSKAIEIINQAMDN 251
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ R P ++AAA+Y+A L +RKTQ ++ + G+TEVT+R YKEL E D
Sbjct: 252 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQLD 306
>gi|325959508|ref|YP_004290974.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325330940|gb|ADZ10002.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 325
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R+ +R RS+E + A+L A R+ PRTL EI+ +
Sbjct: 148 SSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAEVS 207
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ Q A I + K
Sbjct: 208 RVGKKEVGRTYRFLTRELNIKLP--PTSPVDYIPRFASELNLSGEVQSKAIEIINNAMAK 265
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ + P ++AAA+Y+A L +RKTQ ++ +V G+TEVT+R YKEL E
Sbjct: 266 GLTSGKGPTGVAAAALYIASVLLGERKTQRDVAEVAGVTEVTIRNRYKELSE 317
>gi|15668963|ref|NP_247767.1| transcription initiation factor IIB [Methanocaldococcus jannaschii
DSM 2661]
gi|2833587|sp|Q58192.1|TF2B_METJA RecName: Full=Transcription initiation factor IIB; Short=TFIIB;
Contains: RecName: Full=Endonuclease Mja Tfb; AltName:
Full=Mja TFIIB intein; AltName: Full=Mja Tfb intein
gi|1591481|gb|AAB98771.1| transcription initiation factor IIB (TFIIB) [Methanocaldococcus
jannaschii DSM 2661]
Length = 673
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 122/252 (48%), Gaps = 21/252 (8%)
Query: 81 FITAFSAWSL--------VPSPLFLRSSHSFSGQLAELERT--FELLSSSTTSTSSSVMM 130
F+ F + L + + + R+ S+ L+ +R + L S
Sbjct: 423 FVAGFGGFVLHNTIHDKGLSTVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAE 482
Query: 131 DNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREA 189
NL L +D + S LGL + ++A ++R +R RS+E + AA+ A R
Sbjct: 483 RNLAFALSELDRITSKLGLPRHVRENAAIIYRGAVEKGLIRGRSIEGVVAAAIYAACRRC 542
Query: 190 QEPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLN 245
+ PRTL EI+ A+ V +KEIG+ + L L + + PI+ ++PRF + L L
Sbjct: 543 RVPRTLDEIAEASRVDRKEIGRTYRFLARELNIKLTPTNPID------YVPRFASELGLP 596
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
+ A I + K + R P ++AAAIY+A L R+TQ E+ +V G+TEVT+
Sbjct: 597 GEVESKAIQILQQAAEKGLTSGRGPTGVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTI 656
Query: 306 RKVYKELLENWD 317
R YKEL E+ D
Sbjct: 657 RNRYKELTEHLD 668
>gi|150401578|ref|YP_001325344.1| transcription initiation factor IIB [Methanococcus aeolicus
Nankai-3]
gi|189029853|sp|A6UW60.1|TF2B_META3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150014281|gb|ABR56732.1| Transcription factor TFIIB cyclin-related [Methanococcus aeolicus
Nankai-3]
Length = 334
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 107/191 (56%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 145 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 204
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L++ + PI+ ++PRF + L+L
Sbjct: 205 VPRTLDEIAEMSRVDRKEIGRTYRFISRELKIRLAPTSPID------YVPRFASELKLPG 258
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + +K + R P ++AAAIY+A L RKTQ E+ V G+TEVT+R
Sbjct: 259 EVESKAISILQKAGDKGLTSGRGPTGVAAAAIYIASVLHGTRKTQREVADVAGVTEVTIR 318
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 319 NRYKELTEHLD 329
>gi|257076875|ref|ZP_05571236.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 311
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 105/188 (55%), Gaps = 11/188 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ ++ +AS L + D+ + + ++R +R RS+E + ++ A R
Sbjct: 122 NLSQALQELERMASNLSIPNDVRETSAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITN 181
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ V +KEIG+ +I+ L+L S+P + ++ RFC+ L+L+
Sbjct: 182 VPRTLDEIASVTRVKKKEIGRTYRIMARYLKLNILPSKPDD------YVNRFCSKLRLSM 235
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
A+ A I ++ I+ + + P ++AAAIY+A + +R+TQ I +V G+TEVT+R
Sbjct: 236 EARKRAEEILKMAIDNDLTSGKGPTGVAAAAIYIASLITGERRTQRAIAEVAGVTEVTIR 295
Query: 307 KVYKELLE 314
YKEL E
Sbjct: 296 NRYKELTE 303
>gi|147919688|ref|YP_686567.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
gi|110621963|emb|CAJ37241.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
Length = 337
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 104/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL +I + + ++R S +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRNIRETSAVVYRKAVSKNLIRGRSIEGVAAAALYAACRQNG 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIAEVSRVSRKEIGRTYRFISRELGLKLMPTSPID------YVPRFCSGLSLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q A I K + R P ++AAAIY++ L +R+TQ E+ V G+TEVT+R
Sbjct: 262 EVQSKAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEELD 332
>gi|304315034|ref|YP_003850181.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
gi|302588493|gb|ADL58868.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
Length = 310
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R +R RS+E + A+L A R PRTL EI+ +
Sbjct: 133 SSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRSCNVPRTLDEIAEVS 192
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ Q A I E+ +
Sbjct: 193 RVSKKEVGRTYRFLTRELNIKLP--PTSPVDYVPRFASELGLSGEVQSKAIEIIEMAMEN 250
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ R P ++AAA+Y+A L + KTQ ++ +V G+TEVT+R YKEL E D
Sbjct: 251 GLTSGRGPTGVAAAALYIASVLLGECKTQRDVAEVAGVTEVTIRNRYKELTEQLD 305
>gi|20094294|ref|NP_614141.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|24212486|sp|Q8TX21.1|TF2B_METKA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19887337|gb|AAM02071.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 307
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 3/192 (1%)
Query: 124 TSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALV 183
S S + +A+L++ ++AS L L + + A ++R +R R +E++ AA+
Sbjct: 110 VSGSRERNFFQAFLELENLASKLQLPESVRELAASIYRKAYKEGIVRGRGIESVLGAAVF 169
Query: 184 QAIREAQEPRTLQEISIAANVP-QKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLL 242
A +EA+ PRT +EI+ A V + EI + ++L L L Q S H+PRF + L
Sbjct: 170 AACKEARVPRTAREIAEALGVSDENEILRAYRVLQRRLNLKQKPTEPSD--HLPRFASKL 227
Query: 243 QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
++++ Q A I E K + P ++AAA+Y+A LE +R+TQ EI +V +TE
Sbjct: 228 GVSENVQAKAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEIAEVARVTE 287
Query: 303 VTLRKVYKELLE 314
VT+R YKE+ E
Sbjct: 288 VTIRNRYKEICE 299
>gi|14195251|sp|Q9P9I7.1|TF2B_METTL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|6735522|emb|CAB69073.1| archaeal transcription factor B [Methanothermococcus
thermolithotrophicus]
Length = 339
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 150 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L + + PI+ ++PRF + L+L
Sbjct: 210 VPRTLDEIAEGSRVDRKEIGRTYRFISRELNIRLTPTNPID------YVPRFASELKLPG 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + K + R P ++AAAIY+A L R+TQ E+ V G+TEVT+R
Sbjct: 264 EVESKAISILQKANEKGLTSGRGPTGVAAAAIYIASVLHGTRRTQREVADVAGVTEVTIR 323
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 324 NRYKELTEHLD 334
>gi|374635845|ref|ZP_09707435.1| Transcription factor TFIIB cyclin-related protein [Methanotorris
formicicus Mc-S-70]
gi|373560981|gb|EHP87227.1| Transcription factor TFIIB cyclin-related protein [Methanotorris
formicicus Mc-S-70]
Length = 821
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 101/180 (56%), Gaps = 10/180 (5%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+AS LGL ++ ++A L+R +R RS+E +A AAL A R + PRTL EIS A
Sbjct: 643 IASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCRVPRTLDEISEA 702
Query: 202 ANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
+ V +KEIG+ + L L + + PI+ ++PRF + L L + A I +
Sbjct: 703 SRVDRKEIGRTYRFLSRELGIKLAPTNPID------YVPRFASELGLPGEVESKAIAILQ 756
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
K + R P ++AAAIY+A L R+TQ ++ +V G+TEVT+R YKEL E+ D
Sbjct: 757 KAAEKGLTSGRGPTGVAAAAIYIASVLLGNRRTQRDVAEVAGVTEVTIRNRYKELTEHLD 816
>gi|134046665|ref|YP_001098150.1| transcription initiation factor IIB [Methanococcus maripaludis C5]
gi|189029855|sp|A4G0F2.1|TF2B_METM5 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|132664290|gb|ABO35936.1| Transcription initiation factor IIB (TFIIB) [Methanococcus
maripaludis C5]
Length = 339
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 150 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L + + P++ ++PRF + L+L
Sbjct: 210 VPRTLDEIAEVSRVDRKEIGRTYRFISRELNIRLAPTNPVD------YVPRFASELKLPG 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + K + R P ++AAAIY+A L+ R+TQ E+ V G+TEVT+R
Sbjct: 264 EVESKAISILQKAGEKGLTSSRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIR 323
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 324 NRYKELTEHLD 334
>gi|333911004|ref|YP_004484737.1| transcription initiation factor IIB [Methanotorris igneus Kol 5]
gi|333751593|gb|AEF96672.1| Transcription initiation factor IIB [Methanotorris igneus Kol 5]
Length = 343
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 154 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCR 213
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ A+ V +KEIG+ + L L + + PI+ ++PRF + L L
Sbjct: 214 VPRTLDEIAEASRVDRKEIGRTYRFLARELGIKLAPTNPID------YVPRFASELGLPG 267
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + K + R P ++AAAIY+A L R+TQ ++ +V G+TEVT+R
Sbjct: 268 EVESKAIAILQKAAEKGLTSGRGPTGVAAAAIYIASVLLGNRRTQRDVAEVAGVTEVTIR 327
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 328 NRYKELTEHLD 338
>gi|150402961|ref|YP_001330255.1| transcription initiation factor IIB [Methanococcus maripaludis C7]
gi|189029856|sp|A6VI28.1|TF2B_METM7 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150033991|gb|ABR66104.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C7]
Length = 339
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 150 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L + + P++ ++PRF + L+L
Sbjct: 210 VPRTLDEIAEVSRVDRKEIGRTYRFISRELNIRLAPTNPVD------YVPRFASELKLPG 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + K + R P ++AAAIY+A L+ R+TQ E+ V G+TEVT+R
Sbjct: 264 EVESKAISILQKAGEKGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIR 323
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 324 NRYKELTEHLD 334
>gi|383319295|ref|YP_005380136.1| transcription initiation factor TFIIB [Methanocella conradii HZ254]
gi|379320665|gb|AFC99617.1| Transcription initiation factor TFIIB [Methanocella conradii HZ254]
Length = 337
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 104/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL +I + + ++R + +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNG 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIAEVSRVSRKEIGRTYRFISRELGLKLMPTSPID------YVPRFCSGLNLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q A I K + R P ++AAAIY++ L +R+TQ E+ V G+TEVT+R
Sbjct: 262 EVQSRAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEELD 332
>gi|336121697|ref|YP_004576472.1| transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
gi|334856218|gb|AEH06694.1| Transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
Length = 336
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 147 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 206
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L++ + PI+ ++PRF + L+L
Sbjct: 207 VPRTLDEIAEISRVDRKEIGRTYRFISRELKIRLAPTNPID------YVPRFASELKLPG 260
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + K + R P ++AAAIY+A L R+TQ E+ V G+TEVT+R
Sbjct: 261 EVESKAIAILQKANEKGLTSGRGPTGVAAAAIYIASVLHGTRRTQREVADVAGVTEVTIR 320
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 321 NRYKELTEHLD 331
>gi|159905293|ref|YP_001548955.1| transcription initiation factor IIB [Methanococcus maripaludis C6]
gi|226703638|sp|A9A8Q0.1|TF2B_METM6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|159886786|gb|ABX01723.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C6]
Length = 339
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 150 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L + + P++ ++PRF + L+L
Sbjct: 210 VPRTLDEIAEVSRVDRKEIGRTYRFISRELNIRLAPTNPVD------YVPRFASELKLPG 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + K + R P ++AAAIY+A L+ R+TQ E+ V G+TEVT+R
Sbjct: 264 EVESKAISILQKAGEKGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIR 323
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 324 NRYKELTEHLD 334
>gi|48478410|ref|YP_024116.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431058|gb|AAT43923.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 310
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 11/188 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ ++ + S L + D+ + A ++R +R RS+E + ++ A R
Sbjct: 121 NLSQALQELERMTSNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITN 180
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ V +KEIG+ +I+ L+L S+P + ++ RFC+ L+L+
Sbjct: 181 VPRTLDEIASVTRVKKKEIGRTYRIMARYLKLNIMPSKPED------YVNRFCSKLRLSM 234
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
A+ A I ++ ++ + + P ++AAAIY+A + +R+TQ I +V G+TEVT+R
Sbjct: 235 EARKRAEEILKMAVDNDLTSGKGPTGVAAAAIYIASLITGERRTQRAIAEVAGVTEVTIR 294
Query: 307 KVYKELLE 314
YKEL E
Sbjct: 295 NRYKELTE 302
>gi|150399786|ref|YP_001323553.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399791|ref|YP_001323558.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399796|ref|YP_001323563.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399801|ref|YP_001323568.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150012489|gb|ABR54941.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012494|gb|ABR54946.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012499|gb|ABR54951.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012504|gb|ABR54956.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
Length = 339
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 150 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L + + PI+ ++PRF + L+L
Sbjct: 210 VPRTLDEIAEVSRVDRKEIGRTYRFISRELNIRLAPTNPID------YVPRFASELKLPG 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + + + R P ++AAAIY+A L+ R+TQ E+ V G+TEVT+R
Sbjct: 264 EVESKAISILQKAGERGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIR 323
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 324 NRYKELTEHLD 334
>gi|16081986|ref|NP_394398.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195243|sp|Q9HJM7.1|TF2B1_THEAC RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|10640255|emb|CAC12069.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 312
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ ++ +AS L + D+ + A ++R +R RS+E + AL A R
Sbjct: 123 NLSQALQELERMASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITN 182
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL EI+ V +KEIG+ +I+ L+L+ I + ++ RFC+ L+L+ +
Sbjct: 183 VPRTLGEIASVTRVKKKEIGRTYRIMSRYLKLN--IMPSKAEDYISRFCSKLKLSMDTRN 240
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I N + + P ++AAAIY+A + +R+TQ + +V G+TEVT+R YK
Sbjct: 241 KALEILRSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVAGVTEVTIRNRYK 300
Query: 311 ELLE 314
EL E
Sbjct: 301 ELTE 304
>gi|282165287|ref|YP_003357672.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
gi|282157601|dbj|BAI62689.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
Length = 336
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 104/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL +I + + ++R + +R RS+E +A AAL A R+
Sbjct: 147 NLAFALSELDRMASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNG 206
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 207 VPRTLDEIAEVSRVSRKEIGRTYRFISRELGLKLMPTSPID------YVPRFCSGLSLKG 260
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q A I K + R P ++AAAIY++ L +R+TQ E+ V G+TEVT+R
Sbjct: 261 EVQSRAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEVTIR 320
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 321 NRYKELAEELD 331
>gi|355693876|gb|AER99482.1| proteinral transcription factor IIB [Mustela putorius furo]
Length = 289
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 100/180 (55%), Gaps = 5/180 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 114 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 170
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 171 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 228
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 229 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 288
>gi|45357604|ref|NP_987161.1| transcription initiation factor IIB [Methanococcus maripaludis S2]
gi|74556259|sp|Q6M176.1|TF2B_METMP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|45047164|emb|CAF29597.1| transcription initiation factor B [Methanococcus maripaludis S2]
Length = 339
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 150 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L + + P++ ++PRF + L+L
Sbjct: 210 VPRTLDEIAEVSRVDRKEIGRTYRFISRELNIRLAPTNPVD------YVPRFASELKLPG 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + + + R P ++AAAIY+A L+ R+TQ E+ V G+TEVT+R
Sbjct: 264 EVESKAISILQKAGERGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIR 323
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 324 NRYKELTEHLD 334
>gi|297619914|ref|YP_003708019.1| transcription factor TFIIB cyclin-like protein [Methanococcus
voltae A3]
gi|297378891|gb|ADI37046.1| Transcription factor TFIIB cyclin-related protein [Methanococcus
voltae A3]
Length = 337
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 101/180 (56%), Gaps = 10/180 (5%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+AS LGL ++ ++A L+R +R RS+E +A AAL A R + PRTL EI+
Sbjct: 159 IASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEV 218
Query: 202 ANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
+ V +KEIG+ + + L + + P++ ++PRF + L+L + A I +
Sbjct: 219 SRVDRKEIGRTYRFISRELNIRLAPTNPVD------YVPRFASELKLPGEVESKAISILK 272
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
K + R P ++AAAIY+A L+ R+TQ E+ V G+TEVT+R YKEL E+ D
Sbjct: 273 DAGKKGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKELTEHLD 332
>gi|448456850|ref|ZP_21595506.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811447|gb|EMA61454.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 581
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 118/215 (54%), Gaps = 5/215 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 134 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L+L++ Q
Sbjct: 194 IPRSLEEISDVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELELSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 SKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 310
Query: 310 KELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRA 344
+E + + PS +P P+ T T R+
Sbjct: 311 QEQIXSVTRRRPSARSPTSRRSPRSPSATGTRSRS 345
>gi|324514940|gb|ADY46036.1| Transcription initiation factor IIB [Ascaris suum]
Length = 202
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 110/199 (55%), Gaps = 10/199 (5%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I ++++ + L I D A ++FRD L ++ EA A A L A R+ PRT +E+
Sbjct: 8 IREMSARMQLPKSIEDSAAKVFRDVVDTRALVGKNNEAKAAACLYIACRKEGVPRTFKEV 67
Query: 199 SIAANVPQKEIGKYIKILGEALQ--LSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
+ V +KEIG+ K+ +L+ L Q +++ M RFC L L+ + Q++AT I
Sbjct: 68 CAVSRVSKKEIGRCFKLAIRSLETNLEQITSAD----FMSRFCGNLGLSHALQMVATTIA 123
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENW 316
+ + + R+PISI+AAAIY+A Q ++R+T EI + G E T++ YK +L
Sbjct: 124 KKAVERDLVAGRSPISIAAAAIYMASQASNERRTAKEIGAIAGAAETTVKLTYKLMLPCA 183
Query: 317 DDLLPSNYT----PAVPPE 331
+L P +++ ++PP+
Sbjct: 184 HELFPHDFSYMAINSLPPQ 202
>gi|327401743|ref|YP_004342582.1| transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
gi|327317251|gb|AEA47867.1| Transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
Length = 329
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 140/296 (47%), Gaps = 12/296 (4%)
Query: 24 ECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFIT 83
ECGS R +++ QD L + + + + P+ + D ++ G
Sbjct: 35 ECGS------PRLIRDYRRGEFICQDCGLVIEETYIDAGPEWRAFDSEQKEKRSRVGAPV 88
Query: 84 AFSAWSLVPSPLFLRSSHSFSGQLAELE---RTFELLSSSTTSTSSSVMMDNLRAYLQII 140
++ S + S+ + G+ + + F L S+ NL L +
Sbjct: 89 TYTIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSEL 148
Query: 141 D-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEIS 199
D +AS LGL + + A ++R +R RS+E + AAL A R+A PRTL EI+
Sbjct: 149 DRMASALGLPKSVRETAAVIYRKAVDKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIA 208
Query: 200 IAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVV 259
+ V +KEIG+ + + A +L + S A ++PRFC L L+ Q A I +
Sbjct: 209 TYSRVDRKEIGRTYRFI--ARELGLKLMPTSPADYVPRFCAALGLSGDVQKKAIEIIKKA 266
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315
K + R P ++AAAIY+A L +R+TQ E+ +V G+TEVT+R YKEL E
Sbjct: 267 EEKELTSGRGPTGVAAAAIYIASILGGERRTQREVAEVAGVTEVTIRNRYKELAER 322
>gi|340376818|ref|XP_003386928.1| PREDICTED: transcription initiation factor IIB-like [Amphimedon
queenslandica]
Length = 324
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 110/218 (50%), Gaps = 5/218 (2%)
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN 171
++F S S S +M A+ +I ++A L L I D LF+ L+
Sbjct: 105 KSFPKFSKSGVSAGDKSLMT---AFKEIANMADRLNLPRSIVDRGNALFKQVNDEKTLKG 161
Query: 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI 231
R+ +A+A A L A R+ PR+ +EI + +KEIG+ K++ +A + +N+ S
Sbjct: 162 RANDAVAAACLYIACRQEDVPRSFKEICAVSRHSKKEIGRCFKLIRQAA--NPAMNTVST 219
Query: 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ 291
M R+CT L L Q A+ I + + R +S++AA+IY+A Q D +KTQ
Sbjct: 220 TDFMSRYCTNLGLPLPVQKAASFIAQKAVELDLAPGRVYLSVAAASIYMASQASDIKKTQ 279
Query: 292 AEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVP 329
E+ V G+ + T+R+ Y+ L + L P++++ P
Sbjct: 280 KEVGDVVGVADSTIRQSYRLLYPSRHKLFPTDFSFDTP 317
>gi|288930943|ref|YP_003435003.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288893191|gb|ADC64728.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 346
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 120 STTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALAT 179
S T+SS + +R+ +++ + S LGL I + A ++R S R R ++++
Sbjct: 148 SKIRTNSSAERNLVRSLMELERITSSLGLPKSITERAALIYRRVVSNNLTRGRCIDSIVA 207
Query: 180 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRF 238
AA+ A REA PRTL E++ ++V ++ +G+ + L L L PI S ++P+
Sbjct: 208 AAVYAACREAGLPRTLDEVAAHSSVDKRSVGRAYRFLARTLGLKPAPITSTD---YVPKI 264
Query: 239 CTLLQLNKSAQVLATHIGEVVINKC--FCTRRNPISISAAAIYLACQLEDKRKTQAEICK 296
C L ++ Q A I +N+ R+P ++AAA+Y+A L +R+TQ E+
Sbjct: 265 CAALGVSGEVQERALEI----VNEAEKSMVSRSPAGVAAAAVYIASILLGERRTQREVAG 320
Query: 297 VTGLTEVTLRKVYK 310
V G+TEVT+R YK
Sbjct: 321 VAGVTEVTIRNCYK 334
>gi|448323476|ref|ZP_21512935.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445599623|gb|ELY53653.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 376
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID ++S LG+ + + A ++R S +R RS+E ++TA L A R+
Sbjct: 178 NLQFALSEIDRMSSALGVPRSVREVASVMYRRALSEDLIRGRSIEGMSTAVLYAACRQEG 237
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V KEI + + + + L+L +P++ ++PRFC+ L +++ Q
Sbjct: 238 IPRSLSEVTEVSRVENKEIARTYRYVSQELELEMRPVDPKK---YLPRFCSQLDVSERIQ 294
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY + L ++KTQ ++ +V +TEVT+R Y
Sbjct: 295 SKAEEIIDTSAEQGILSGKSPTGFAAAAIYSSSLLYGEKKTQKQVAEVAQVTEVTIRNRY 354
Query: 310 KELLE 314
+E LE
Sbjct: 355 QEQLE 359
>gi|340623224|ref|YP_004741677.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
gi|339903492|gb|AEK18934.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
Length = 339
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++ L+R +R RS+E +A AAL A R +
Sbjct: 150 NLAFALSELDRIASKLGLPRNVRENVAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L + + P++ ++PRF + L+L
Sbjct: 210 VPRTLDEIAEVSRVDRKEIGRTYRFISRELNIRLAPTNPVD------YVPRFASELKLPG 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + + + R P ++AAAIY+A L+ R+TQ E+ V G+TEVT+R
Sbjct: 264 EVESKAISILQKAGERGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIR 323
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 324 NRYKELTEHLD 334
>gi|288931755|ref|YP_003435815.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288894003|gb|ADC65540.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 328
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 103/185 (55%), Gaps = 3/185 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL + + A ++R +R RS+E + AAL A R+A
Sbjct: 139 NLAFALSELDRMASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL EI+ + V +KEIG+ + + A +L + S A ++PRFC L L+ Q
Sbjct: 199 VPRTLDEIATYSRVDRKEIGRTYRFI--ARELGLKLLPTSPADYVPRFCAALGLSGEVQK 256
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I + K + R P ++AAAIY+A L +R+TQ E+ +V G+TEVT+R YK
Sbjct: 257 KAIEIIKKAEEKELTSGRGPTGVAAAAIYIASILTGERRTQREVAEVAGVTEVTIRNRYK 316
Query: 311 ELLEN 315
EL E
Sbjct: 317 ELAEK 321
>gi|298675089|ref|YP_003726839.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298288077|gb|ADI74043.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 100/191 (52%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL + + A ++R +R RS+E +A AAL A R+
Sbjct: 152 NLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCS 211
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI + V + EIG+ + + L L + PI+ ++PRFC+ L+L
Sbjct: 212 VPRTLDEIGEVSRVSRIEIGRTYRFISRELSLKLMPTSPID------YVPRFCSGLKLKS 265
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q I K + R P ++AAAIY+A L +R+TQ E+ V G+TEVT+R
Sbjct: 266 EVQSKGVEILRQASEKEITSGRGPTGVAAAAIYIASMLCGERRTQREVADVAGVTEVTIR 325
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 326 NRYKELSEELD 336
>gi|374723591|gb|EHR75671.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 308
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 6/204 (2%)
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN 171
R ++ S + +T ++ M A ++ +AS L L + + A ++ +R
Sbjct: 104 RKWQKRSRVSNATERNLAM----ALAELDRMASRLELPKSVREAAAVNYKKAVDKRLIRG 159
Query: 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI 231
RS+E +A A+L A R+ PRTL EI A+ +KEIG+ + + +L I
Sbjct: 160 RSIEGVAAASLYAACRQCGVPRTLDEIGQASRTGRKEIGRTYRFM--VRELKMKIMPTGP 217
Query: 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ 291
++ RFC+ L L+ + A + + K + R P I+A+ IY+A L KR+TQ
Sbjct: 218 EDYISRFCSGLGLDAEVEAKAYELIKAAQEKELTSGRGPTGIAASIIYIASVLCGKRRTQ 277
Query: 292 AEICKVTGLTEVTLRKVYKELLEN 315
E+ +V G+TEVT+R YKEL++N
Sbjct: 278 REVAEVAGVTEVTIRNRYKELIQN 301
>gi|13541914|ref|NP_111602.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363020|sp|Q979Q3.1|TF2B1_THEVO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|14325345|dbj|BAB60249.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 312
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ ++ +A L + D+ + A ++R +R RS+E + AL A R
Sbjct: 123 NLSQALQELERMAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITN 182
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL EI+ V +KEIG+ +I+ L+L+ I + ++ RFC+ L+L+ +
Sbjct: 183 VPRTLGEIASVTRVKKKEIGRTYRIMSRYLKLN--IMPSKAEDYISRFCSKLKLSMDTRN 240
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I N + + P ++AAAIY+A + +R+TQ + +V G+TEVT+R YK
Sbjct: 241 KALEILRDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVAGVTEVTIRNRYK 300
Query: 311 ELLE 314
EL E
Sbjct: 301 ELTE 304
>gi|317106705|dbj|BAJ53205.1| JHL06B08.6 [Jatropha curcas]
Length = 312
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++ LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
Query: 195 LQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAV--HMPRFCTLLQLNKS 247
++EI S+A +KEIG+ +K LG L+ Q + +I M RFC+ L +N
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLG--LETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
A A V ++ F RR+PISI+AA IY+ QL D +K EI + TG+ E T+R
Sbjct: 226 AMKAAQEA--VQKSEEFDIRRSPISIAAAVIYIISQLSDDKKPLREISQATGVAEGTIRN 283
Query: 308 VYKELLENWDDLLPSNY 324
YK+L + ++P Y
Sbjct: 284 SYKDLYPHVSKIIPGWY 300
>gi|257388038|ref|YP_003177811.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170345|gb|ACV48104.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 322
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 133 NLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATSSLYAAARQAG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + EI + + + L L QP + S ++PRF + L L+ +
Sbjct: 193 TPRSLDEISAVSRVEKDEIARTYRYVVRELGLEIQPADPES---YVPRFASDLDLSDEVE 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AA +Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 250 RRARQLLQNAKQQGVHSGKSPVGLAAAGVYAASLLTNEKVTQSEVSEVANISEVTIRNRY 309
Query: 310 KELLE 314
ELLE
Sbjct: 310 HELLE 314
>gi|429964420|gb|ELA46418.1| hypothetical protein VCUG_02096 [Vavraia culicis 'floridensis']
Length = 305
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Query: 152 ICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211
I D A +F+ L+ +++E + A + A R+ Q PRT +E+S+ VP+KEIG+
Sbjct: 127 ISDRAKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFKEVSVLTAVPKKEIGR 186
Query: 212 YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPI 271
K++ ++ Q + ++ I + RFC+ L L Q +A I + VI K ++P
Sbjct: 187 SFKLIFPHIEKLQCVTTDDI---VARFCSDLNLGIDVQKIAVQISKNVIEKGCMAGKSPD 243
Query: 272 SISAAAIYLACQL-EDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSN 323
S++AA IYL + + + Q +I VT +T+VT++ YKEL++ +D+LP +
Sbjct: 244 SVAAAVIYLITYIFPNLKGVQKDIQYVTNVTDVTIKNTYKELMQYKEDILPKD 296
>gi|212224386|ref|YP_002307622.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009343|gb|ACJ16725.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 303
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 156 AFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKI 215
A L+R +R RS+E + +AAL A R PRTL EI+ + V +KEIG+ +
Sbjct: 139 AASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSKVTKKEIGRSYRF 198
Query: 216 LGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISA 275
L L L+ + S ++ RF L +++ + A I + I + + + P ++A
Sbjct: 199 LARGLGLN--LRPTSPIEYIDRFGDSLDVSQRTKKRAKEILQEAIKRGITSGKGPTGLAA 256
Query: 276 AAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315
AA+Y+A LE ++KTQ E+ +V +TEVT+R YKEL+E
Sbjct: 257 AALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVEK 296
>gi|432328477|ref|YP_007246621.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135186|gb|AGB04455.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 312
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 105/185 (56%), Gaps = 3/185 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ ++ +AS LGL D+ + A ++R +R RS+E + A++ A R
Sbjct: 123 NLSQALQELERMASNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLG 182
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL+EIS + ++EIG+ +I+ L+L+ I ++ RFC+ L+L+ +
Sbjct: 183 IPRTLEEISTVTRIKKREIGRVYRIMSRTLKLN--IYPTKPEDYIDRFCSKLKLSGEVKT 240
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I ++ + + R P ++AAAIY+A L +R+TQ E+ V G+TEVT+R YK
Sbjct: 241 KAYEIIKMARERDIISGRGPTGVAAAAIYIAAILMGERRTQREVADVAGVTEVTIRNRYK 300
Query: 311 ELLEN 315
EL+E
Sbjct: 301 ELVEK 305
>gi|341582974|ref|YP_004763466.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810632|gb|AEK73789.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 303
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 2/180 (1%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+A+ + L + + A L+R +R RS+E + +AAL A R PRTL EI+
Sbjct: 125 MAAQMRLPRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAV 184
Query: 202 ANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVIN 261
+ V +KEIG+ + L L L+ + S ++ RF L ++ + A I I
Sbjct: 185 SKVTKKEIGRSYRFLARGLNLN--LRPTSPIEYVDRFGDALNVSARTKKRAKEILHEAIK 242
Query: 262 KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
+ + + P ++AAA+Y+A LE ++KTQ E+ +V +TEVT+R YKEL+E + +P
Sbjct: 243 RGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVEKLNINVP 302
>gi|255588003|ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223525233|gb|EEF27913.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++ LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
Query: 195 LQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAV--HMPRFCTLLQLNKS 247
++EI S+A +KEIG+ +K LG L+ Q + +I M RFC+ L +N
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLG--LETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
A A V ++ F RR+PISI+AA IY+ QL D +K +I TG+ E T+R
Sbjct: 226 AMKAAQEA--VQKSEEFDIRRSPISIAAAVIYIISQLSDDKKLLRDISHATGVAEGTIRN 283
Query: 308 VYKELLENWDDLLPSNY 324
YK+L + ++PS Y
Sbjct: 284 SYKDLYPHVSKIIPSWY 300
>gi|390961643|ref|YP_006425477.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390519951|gb|AFL95683.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 298
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 2/180 (1%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+A+ + L + + A L+R +R RS+E + +AAL A R PRTL EI+
Sbjct: 120 MAAQMRLPRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAV 179
Query: 202 ANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVIN 261
+ V +KEIG+ + L L L+ + S ++ RF L ++ + A I I
Sbjct: 180 SKVTKKEIGRSYRFLARGLNLN--LRPTSPIEYVDRFGDALNVSARTKKRAKEILREAIK 237
Query: 262 KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
+ + + P ++AAA+Y+A LE ++KTQ E+ +V +TEVT+R YKEL+E + +P
Sbjct: 238 RGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVEKLNINVP 297
>gi|448470225|ref|ZP_21600422.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808303|gb|EMA58375.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 317
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 131 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + LQL++ Q
Sbjct: 191 IPRSLDEVADVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALQLSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 248 SKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|448503002|ref|ZP_21612866.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693404|gb|ELZ45556.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 131 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + LQL++ Q
Sbjct: 191 IPRSLDEVADVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALQLSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 248 SKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|409095301|ref|ZP_11215325.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 300
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 112/212 (52%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D +AS L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASHLALPRHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EI+ + V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYAACRLLKIPRTLDEIAEVSKVDKKEIGRSFRFIARHLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
+ ++ +F L L++ + A + E N+ + ++P + AAA+Y+A +E++R+
Sbjct: 207 KPSDYVNKFADELGLSEKVRKRAIELLEEAYNRGLTSGKSPAGLVAAALYIAGLMEEERR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL+E + +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVEKLNLKVP 298
>gi|76803221|ref|YP_331316.1| transcription initiation factor TFB 8 [Natronomonas pharaonis DSM
2160]
gi|76559086|emb|CAI50684.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID ++S LG+ I + A ++R +R RS+E +ATAAL A R+
Sbjct: 138 NLQFALSEIDRMSSALGVPRSIREVASVIYRRALDDDLIRGRSIEGVATAALYAACRKEG 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 198 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMEPVDPQK---YVPRFCSELELSEEVQ 254
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E K + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 255 SKAKDIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRY 314
Query: 310 KELLE 314
+E +E
Sbjct: 315 QEQIE 319
>gi|222479916|ref|YP_002566153.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452818|gb|ACM57083.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 317
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 131 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + LQL++ Q
Sbjct: 191 IPRSLDEVADVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALQLSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 248 SKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|440491617|gb|ELQ74241.1| Transcription initiation factor TFIIB [Trachipleistophora hominis]
Length = 305
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 97/171 (56%), Gaps = 4/171 (2%)
Query: 152 ICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211
I D A +F+ L+ +++E + A + A R+ Q PRT +E+S+ VP+KEIG+
Sbjct: 127 ISDRAKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFKEVSVLTAVPKKEIGR 186
Query: 212 YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPI 271
K++ ++ Q + ++ I + RFC+ L L Q +A I + VI K ++P
Sbjct: 187 SFKLIFPHIEKLQCVTTDDI---VARFCSDLNLGIDVQKIAVQISKNVIEKGCMAGKSPD 243
Query: 272 SISAAAIYLACQL-EDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
S++AA IY+ + + + Q +I VT +T+VT++ YKEL++ +D+LP
Sbjct: 244 SVAAAVIYMITYIFPNLKGVQKDIQYVTNVTDVTIKNTYKELMQYKEDILP 294
>gi|240102532|ref|YP_002958841.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910086|gb|ACS32977.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +A+ + L + + A L+R +R RS+E + +AAL A R
Sbjct: 114 NLAFALSELDRMAAQMRLPRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEG 173
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++ RF L ++
Sbjct: 174 IPRTLDEIARVSKVTKKEIGRSYRFMARGLGLNLRPTSPID------YVDRFGDALGVSS 227
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + I + + + P ++AAA+Y+A LE ++KTQ E+ +V +TEVT+R
Sbjct: 228 KTKQRAKEILQEAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVR 287
Query: 307 KVYKELLENWDDLLP 321
YKEL+E + +P
Sbjct: 288 NRYKELVEKLNIKVP 302
>gi|291333561|gb|ADD93256.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C82]
Length = 242
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 6/204 (2%)
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN 171
R ++ S + +T ++ M A ++ +AS L L + + A ++ +R
Sbjct: 38 RKWQKRSRVSNATERNLAM----ALAELDRMASRLELPKSVREAAAVNYKKAVDKRLIRG 93
Query: 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI 231
RS+E +A A+L A R+ PRTL EI A+ +KEIG+ + + L++ I
Sbjct: 94 RSIEGVAAASLYAACRQCGVPRTLDEIGQASRTGRKEIGRTYRFMVRELKM--KIMPTGP 151
Query: 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ 291
++ RFC+ L L+ + A + + K + R P I+A+ IY+A L KR+TQ
Sbjct: 152 EDYISRFCSGLGLDADVEAKAYELIKAAQEKELTSGRGPTGIAASIIYIASVLCGKRRTQ 211
Query: 292 AEICKVTGLTEVTLRKVYKELLEN 315
E+ +V G+TEVT+R YKEL++N
Sbjct: 212 REVAEVAGVTEVTIRNRYKELIQN 235
>gi|292654896|ref|YP_003534793.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|291372806|gb|ADE05033.1| transcription initiation factor TFB [Haloferax volcanii DS2]
Length = 326
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R S +R RS+E +AT+AL A R+
Sbjct: 139 NLQFALSEIDRMASALGVPRSVREVASVIYRRALSEDLIRGRSIEGVATSALYAACRKEG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L L+K Q
Sbjct: 199 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELDLSKEVQ 255
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 256 SKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRY 315
Query: 310 KELLE 314
+E +E
Sbjct: 316 QEQIE 320
>gi|399578753|ref|ZP_10772498.1| Transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236212|gb|EJN57151.1| Transcription initiation factor IIB [Halogranum salarium B-1]
Length = 327
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 114/194 (58%), Gaps = 7/194 (3%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVAAVIYRRALDTDLIRGRSIEGVATSALYIACRQEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L+E+S A V ++EIG+ + + L L P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEVSSVARVDRREIGRTYRYIAHELGL--PMSPVDPKQYLPRFCSELELSEDVQQ 250
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
AT I E + + ++P +AAAIY A L ++++TQ +I KV +TEVT+R Y+
Sbjct: 251 RATTIIERTTAEGLHSGKSPTGFAAAAIYTAALLCNEKRTQRDIAKVAQVTEVTIRNRYR 310
Query: 311 ELLE----NWDDLL 320
E LE ++D+LL
Sbjct: 311 EQLEVVGLDFDELL 324
>gi|223478727|ref|YP_002582898.1| transcription initiation factor iiB [Thermococcus sp. AM4]
gi|214033953|gb|EEB74779.1| Transcription initiation factor iiB [Thermococcus sp. AM4]
Length = 303
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +A+ + L + + A L+R +R RS+E + +AAL A R
Sbjct: 114 NLAFALSELDRMAAQMRLPRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEG 173
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++ RF L ++
Sbjct: 174 IPRTLDEIARVSKVTKKEIGRSYRFMARGLGLNLRPTSPID------YVDRFGDALGVSS 227
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + I + + + P ++AAA+Y+A LE ++KTQ E+ +V +TEVT+R
Sbjct: 228 KTKQRAKEILQEAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVR 287
Query: 307 KVYKELLENWDDLLP 321
YKEL+E + +P
Sbjct: 288 NRYKELVEKLNIKVP 302
>gi|156938159|ref|YP_001435955.1| transcription initiation factor IIB [Ignicoccus hospitalis KIN4/I]
gi|189029852|sp|A8AC96.1|TF2B_IGNH4 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|156567143|gb|ABU82548.1| Transcription initiation factor IIB (TFIIB) [Ignicoccus hospitalis
KIN4/I]
Length = 316
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 105/192 (54%), Gaps = 3/192 (1%)
Query: 129 MMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIR 187
M NL + +D +A++L L I + A ++R +R RS+E++ A + A R
Sbjct: 115 MDRNLTIAMNELDRMANLLNLPKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACR 174
Query: 188 EAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKS 247
+PRTL EI+ V +KE+ + +++ + L+L PI ++++ H+PR L+L
Sbjct: 175 IHHQPRTLDEIAKKLEVNRKEVARCYRLITKELKLKVPI-ADAMD-HIPRIGEALKLRGD 232
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
A I E + ++P I+AA IY+A + +R+TQ EI V G+TEVT+R
Sbjct: 233 IIEYAMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGERRTQKEIANVAGVTEVTVRN 292
Query: 308 VYKELLENWDDL 319
YKE+++ +++
Sbjct: 293 RYKEIMKVLNEM 304
>gi|448424065|ref|ZP_21582191.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448448397|ref|ZP_21591210.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448478955|ref|ZP_21603961.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448491995|ref|ZP_21608663.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|448512210|ref|ZP_21616324.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448520833|ref|ZP_21618166.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445682730|gb|ELZ35143.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445692213|gb|ELZ44394.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445694530|gb|ELZ46655.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702969|gb|ELZ54908.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445814813|gb|EMA64771.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445822785|gb|EMA72547.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 131 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + LQL++ Q
Sbjct: 191 IPRSLDEVADVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASSLQLSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 248 SKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|448528883|ref|ZP_21620263.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710331|gb|ELZ62150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 131 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + LQL++ Q
Sbjct: 191 IPRSLDEVADVSRVPQKEIGRTYRYISQELGLELRPVDPKQF---VPRFASSLQLSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 248 SKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|448582204|ref|ZP_21645708.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448604362|ref|ZP_21657614.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448624090|ref|ZP_21670163.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445731852|gb|ELZ83435.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445744522|gb|ELZ95998.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445750057|gb|EMA01496.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 296
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R S +R RS+E +AT+AL A R+
Sbjct: 109 NLQFALSEIDRMASALGVPRSVREVASVIYRRALSEDLIRGRSIEGVATSALYAACRKEG 168
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L L+K Q
Sbjct: 169 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELDLSKEVQ 225
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 226 SKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRY 285
Query: 310 KELLE 314
+E +E
Sbjct: 286 QEQIE 290
>gi|448419740|ref|ZP_21580584.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674654|gb|ELZ27191.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 334
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 147 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRKEG 206
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L+L+K Q
Sbjct: 207 IPRSLEEISDVSRVERKEIGRTYRYISQELGLEMKPVDPKK---YVPRFSSELELSKEVQ 263
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 264 SKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 323
Query: 310 KELLE 314
+E +E
Sbjct: 324 QEQIE 328
>gi|110667197|ref|YP_657008.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109624944|emb|CAJ51356.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 329
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LG+ + + A ++R S +R RS+E ++T+AL A R+
Sbjct: 142 NLQFALSEVDRMASALGVPRSVREVASVIYRRALSEDLIRGRSIEGVSTSALYAACRKEG 201
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L L+K Q
Sbjct: 202 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELDLSKEVQ 258
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 259 SKADEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 318
Query: 310 KELLE 314
+E +E
Sbjct: 319 QEQIE 323
>gi|337283539|ref|YP_004623013.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
gi|334899473|gb|AEH23741.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
Length = 322
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 113/227 (49%), Gaps = 6/227 (2%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D + + L L + + A +L+R+ +
Sbjct: 91 EKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEEEAARLYREAVRRGLI 150
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EIS + V +KEIG+ + + L L+
Sbjct: 151 RGRSIESVIAACVYAACRLLKVPRTLDEISDISRVDKKEIGRSYRFIARNLNLTPKKLFV 210
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A I E K + ++P + AAA+Y+A LE +++
Sbjct: 211 KPTDYVNKFADELGLSEKVRRKAVEILEEAYRKGLTSGKSPAGLVAAALYIASLLEGEKR 270
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYT-----PAVPPE 331
TQ E+ ++ +TEVT+R YKEL+E LPS + VPPE
Sbjct: 271 TQREVAEIARVTEVTVRNRYKELVEKLGLKLPSAFITNIAKAEVPPE 317
>gi|15227397|ref|NP_181694.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
gi|1351221|sp|P48512.1|TF2B1_ARATH RecName: Full=Transcription initiation factor IIB-1; AltName:
Full=General transcription factor TFIIB-1;
Short=AtTFIIB1
gi|945085|gb|AAB09755.1| transcription factor TFIIB [Arabidopsis thaliana]
gi|2618697|gb|AAB84344.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|20260322|gb|AAM13059.1| transcription factor IIB [Arabidopsis thaliana]
gi|21554842|gb|AAM63705.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|22136182|gb|AAM91169.1| transcription factor IIB [Arabidopsis thaliana]
gi|39545878|gb|AAR28002.1| TFIIB1 [Arabidopsis thaliana]
gi|330254915|gb|AEC10009.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
Length = 312
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 106/199 (53%), Gaps = 11/199 (5%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++A+ I ++ LGL I D A +L++ R R+ +AL A L A R+ +P
Sbjct: 106 IQAFKTIATMSERLGLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKP 165
Query: 193 RTLQEISIAAN-VPQKEIGK----YIKILGEALQLSQPINSNSIAV--HMPRFCTLLQLN 245
RT++EI + AN +KEIG+ +K LG L+ Q ++ +I M RFC+ L ++
Sbjct: 166 RTIKEICVIANGATKKEIGRAKDYIVKTLG--LEPGQSVDLGTIHAGDFMRRFCSNLAMS 223
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
A A V ++ F RR+PISI+A IY+ QL D +KT +I TG+ E T+
Sbjct: 224 NHAVKAAQEA--VQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTI 281
Query: 306 RKVYKELLENWDDLLPSNY 324
R YK+L + + PS Y
Sbjct: 282 RNSYKDLYPHLSKIAPSWY 300
>gi|354612079|ref|ZP_09030031.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191657|gb|EHB57163.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 320
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMKPVDPKK---YVPRFCSELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 SKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|385802603|ref|YP_005839003.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728095|emb|CCC39217.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 329
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LG+ + + A ++R S +R RS+E ++T+AL A R+
Sbjct: 142 NLQFALSEVDRMASALGVPRSVREVASVIYRRALSEDLIRGRSIEGVSTSALYAACRKEG 201
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L L+K Q
Sbjct: 202 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELDLSKEVQ 258
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 259 SKADEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 318
Query: 310 KELLE 314
+E +E
Sbjct: 319 QEQIE 323
>gi|448292886|ref|ZP_21483207.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543300|ref|ZP_21624869.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550186|ref|ZP_21628709.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559542|ref|ZP_21633616.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572791|ref|ZP_21640552.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448597013|ref|ZP_21654151.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445571861|gb|ELY26404.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706844|gb|ELZ58717.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710932|gb|ELZ62727.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445711961|gb|ELZ63747.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445719563|gb|ELZ71242.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740894|gb|ELZ92399.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 296
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R S +R RS+E +AT+AL A R+
Sbjct: 109 NLQFALSEIDRMASALGVPRSVREVASVIYRRALSEDLIRGRSIEGVATSALYAACRKEG 168
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L L+K Q
Sbjct: 169 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELDLSKEVQ 225
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 226 SKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRY 285
Query: 310 KELLE 314
+E +E
Sbjct: 286 QEQIE 290
>gi|19074360|ref|NP_585866.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|51702029|sp|Q8SRP3.1|TF2B_ENCCU RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|19069002|emb|CAD25470.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|449329432|gb|AGE95704.1| transcription initiation factor TFIIB [Encephalitozoon cuniculi]
Length = 312
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 148 LDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQK 207
L I D A +F++ L+ ++VE + A + A R+ + PRT +EIS+ V ++
Sbjct: 126 LSRTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEISVMTAVQKR 185
Query: 208 EIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTR 267
EIG+ K++ L+ +++ +I + RFC+ L LN Q +AT I +
Sbjct: 186 EIGRCFKLISPHLERMATMSTENI---IARFCSDLNLNIKIQKIATEIAKAAHELGCLAG 242
Query: 268 RNPISISAAAIYLACQLE-DKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSN 323
++P SI+AA IY+ L +++K Q +I VT +TEVT++ YKELL D++P N
Sbjct: 243 KSPDSIAAAVIYMVTNLFPEEKKIQKDIQFVTNVTEVTIKNTYKELLTFKYDIIPEN 299
>gi|257052295|ref|YP_003130128.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|335441176|ref|ZP_08561897.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|256691058|gb|ACV11395.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|334888347|gb|EGM26646.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 321
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 134 NLQFALSEIDRMASALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATSALYAACRKEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 194 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMEPVDPKK---YVPRFCSELELSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 SKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 310
Query: 310 KELLE 314
+E +E
Sbjct: 311 QEQIE 315
>gi|254166941|ref|ZP_04873795.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254168893|ref|ZP_04875733.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596150|ref|YP_003482846.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
gi|197622157|gb|EDY34732.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624551|gb|EDY37112.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289533937|gb|ADD08284.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
Length = 312
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 143/301 (47%), Gaps = 15/301 (4%)
Query: 22 ITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGF 81
IT C CG R + L D L + S + P+ + D D TG
Sbjct: 13 ITRCPECGSTHLVRDYERGELV---CMDCGLVIDESYIDQGPEWRAFDSEQRDSRTRTGA 69
Query: 82 ITAFSAWSL-VPSPLFLRSSHSFSGQL-----AELERTFELLSSSTTSTSSSVMMDNLRA 135
++ + + + ++ S+ + A+L R + S S+ NL
Sbjct: 70 PMTYTIHDKGLSTEISWKNKDSYGKNIPTRSRAQLYRLRKWQKRIRVSNSAE---RNLSQ 126
Query: 136 YLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
LQ ++ ++S LGL D+ + A ++R +R RS+E + A++ A R PRT
Sbjct: 127 ALQELERMSSNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRT 186
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
L+EIS + ++EIG+ +I+ L+L+ I ++ RFC+ L+L+ + A
Sbjct: 187 LEEISTVTRIKKREIGRVYRIMSRTLKLN--IYPTKPEDYIDRFCSKLKLSGEVKKKAYE 244
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
I ++ + + R P ++AAAIY+A L +R+TQ E+ +V G+TEVT+R YKEL E
Sbjct: 245 IIKMARERDIISGRGPTGVAAAAIYIAAILMGERRTQREVAEVAGVTEVTIRNRYKELAE 304
Query: 315 N 315
Sbjct: 305 K 305
>gi|300712183|ref|YP_003737997.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|448295872|ref|ZP_21485935.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|299125866|gb|ADJ16205.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|445583301|gb|ELY37633.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
Length = 323
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +ATAAL A R+
Sbjct: 136 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATAALYAACRKEG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 196 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 253 SKANEIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 312
Query: 310 KELLE 314
+E +E
Sbjct: 313 QEQIE 317
>gi|284161172|ref|YP_003399795.1| transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
gi|284011169|gb|ADB57122.1| Transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
Length = 329
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 107/203 (52%), Gaps = 3/203 (1%)
Query: 114 FELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNR 172
F L S+ NL L +D +AS LGL + + A ++R +R R
Sbjct: 122 FRLRKWQRRIRISNATERNLAFALSELDRMASALGLPKSVRETAAVIYRKAIEKNLIRGR 181
Query: 173 SVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIA 232
S+E + AAL A R+A PRTL EI+ + V +KEIG+ + + A +L + S A
Sbjct: 182 SIEGVVAAALYAACRQAGVPRTLDEIAQYSRVDRKEIGRTYRFI--ARELGLKLMPTSPA 239
Query: 233 VHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQA 292
++PRFC L L+ Q A I + + + R P ++AAAIY+A L +R+TQ
Sbjct: 240 DYVPRFCAALGLSGEVQRKAIEIIKKAEERELTSGRGPTGVAAAAIYIASILCGERRTQR 299
Query: 293 EICKVTGLTEVTLRKVYKELLEN 315
E+ +V G+TEVT+R YKEL E
Sbjct: 300 EVAEVAGVTEVTIRNRYKELAEK 322
>gi|448609114|ref|ZP_21660393.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|448615057|ref|ZP_21664085.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445747491|gb|ELZ98947.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445753144|gb|EMA04563.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 316
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 130 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L+L++ Q
Sbjct: 190 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALELSEEVQ 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 247 AKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 306
Query: 310 KELLE 314
+E +E
Sbjct: 307 QEQIE 311
>gi|448298665|ref|ZP_21488693.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445591335|gb|ELY45541.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 320
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 TKANEIIEKTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|384433900|ref|YP_005643258.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
gi|261602054|gb|ACX91657.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
Length = 306
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
SS+ + +A ++ + ++L L + D A ++R +R RS+E++ AA+ A
Sbjct: 111 SSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAA 170
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R + RTL EI+ +KE+ + ++L L +S P++ ++ R LL L+
Sbjct: 171 CRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVSVPVSDPK--DYVTRIANLLGLS 228
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
+ A I + ++P ++AAAIY+A L D+R+TQ EI +V G+TEVT+
Sbjct: 229 GAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTV 288
Query: 306 RKVYKEL 312
R YKEL
Sbjct: 289 RNRYKEL 295
>gi|227827925|ref|YP_002829705.1| transcription initiation factor IIB [Sulfolobus islandicus M.14.25]
gi|227830647|ref|YP_002832427.1| transcription initiation factor IIB [Sulfolobus islandicus
L.S.2.15]
gi|229579555|ref|YP_002837954.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.G.57.14]
gi|229585192|ref|YP_002843694.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.27]
gi|238620152|ref|YP_002914978.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.4]
gi|284998175|ref|YP_003419942.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385773629|ref|YP_005646195.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
gi|385776265|ref|YP_005648833.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|227457095|gb|ACP35782.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
L.S.2.15]
gi|227459721|gb|ACP38407.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.14.25]
gi|228010270|gb|ACP46032.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.G.57.14]
gi|228020242|gb|ACP55649.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.27]
gi|238381222|gb|ACR42310.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.4]
gi|284446070|gb|ADB87572.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|323475013|gb|ADX85619.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|323477743|gb|ADX82981.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
Length = 309
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
SS+ + +A ++ + ++L L + D A ++R +R RS+E++ AA+ A
Sbjct: 114 SSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAA 173
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R + RTL EI+ +KE+ + ++L L +S P++ ++ R LL L+
Sbjct: 174 CRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVSVPVSDPK--DYVTRIANLLGLS 231
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
+ A I + ++P ++AAAIY+A L D+R+TQ EI +V G+TEVT+
Sbjct: 232 GAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTV 291
Query: 306 RKVYKEL 312
R YKEL
Sbjct: 292 RNRYKEL 298
>gi|448595941|ref|ZP_21653388.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445742395|gb|ELZ93890.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 317
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 131 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L L++ Q
Sbjct: 191 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALDLSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 248 AKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|389846997|ref|YP_006349236.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244303|gb|AFK19249.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 276
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 90 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEG 149
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L+L++ Q
Sbjct: 150 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALELSEEVQ 206
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 207 AKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 266
Query: 310 KELLE 314
+E +E
Sbjct: 267 QEQIE 271
>gi|313127213|ref|YP_004037483.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288315|ref|ZP_21479515.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293578|gb|ADQ68038.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569834|gb|ELY24404.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 140 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRKEG 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L L+K Q
Sbjct: 200 IPRSLEEISDVSRVERKEIGRTYRYISQELGLEMKPVDPKK---YVPRFSSELDLSKEVQ 256
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 257 SKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 316
Query: 310 KELLE 314
+E +E
Sbjct: 317 QEQIE 321
>gi|212224249|ref|YP_002307485.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009206|gb|ACJ16588.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 299
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D +AS L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPRHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EI+ + V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYAACRLLKVPRTLDEIADISRVDKKEIGRSFRFIARNLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A I E K + ++P + AAA+Y+A LED+++
Sbjct: 207 KPTDYVNKFADELGLSEKVRRRAIAILEEAYEKGLTSGKSPAGLVAAALYIAGLLEDEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL+E + +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVEKLNLKIP 298
>gi|15897377|ref|NP_341982.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284173282|ref|ZP_06387251.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|14195237|sp|P58111.1|TF2B1_SULSO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|13813602|gb|AAK40772.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-1)
[Sulfolobus solfataricus P2]
Length = 309
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
SS+ + +A ++ + ++L L + D A ++R +R RS+E++ AA+ A
Sbjct: 114 SSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAA 173
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R + RTL EI+ +KE+ + ++L L +S P++ ++ R LL L+
Sbjct: 174 CRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVSVPVSDPK--DYVTRIANLLGLS 231
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
+ A I + ++P ++AAAIY+A L D+R+TQ EI +V G+TEVT+
Sbjct: 232 GAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTV 291
Query: 306 RKVYKEL 312
R YKEL
Sbjct: 292 RNRYKEL 298
>gi|389846162|ref|YP_006348401.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616218|ref|ZP_21664928.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243468|gb|AFK18414.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750873|gb|EMA02310.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 326
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 139 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRKEG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L L+K Q
Sbjct: 199 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELDLSKEVQ 255
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 256 SKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRY 315
Query: 310 KELLE 314
+E +E
Sbjct: 316 QEQIE 320
>gi|194695160|gb|ACF81664.1| unknown [Zea mays]
gi|414886465|tpg|DAA62479.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
gi|414886466|tpg|DAA62480.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 312
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 15/199 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++A LGL I D A ++++ +R R+ +A+ A L A R+ PRT
Sbjct: 108 AFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRT 167
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLN---- 245
++EI S+A +KEIG+ + + + L++ + +H + RFC+ L +N
Sbjct: 168 VKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGNFLRRFCSTLGMNNQAV 227
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
++AQ H E+ I RR+PISI+AA IY+ QL + +K +I TG+ E T+
Sbjct: 228 RAAQDAVKHSEELDI------RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTI 281
Query: 306 RKVYKELLENWDDLLPSNY 324
R YK+L L+P+ Y
Sbjct: 282 RNSYKDLYPYASRLIPNTY 300
>gi|222478746|ref|YP_002564983.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451648|gb|ACM55913.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 146 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEG 205
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L+L++ Q
Sbjct: 206 IPRSLEEISDVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELELSEEVQ 262
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 263 SKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 322
Query: 310 KELLE 314
+E +E
Sbjct: 323 QEQIE 327
>gi|115480363|ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|18481632|gb|AAL73491.1|AF464908_1 general transcription factor TFIIB [Oryza sativa]
gi|50725809|dbj|BAD33339.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|50726577|dbj|BAD34211.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|125564497|gb|EAZ09877.1| hypothetical protein OsI_32170 [Oryza sativa Indica Group]
gi|125606444|gb|EAZ45480.1| hypothetical protein OsJ_30135 [Oryza sativa Japonica Group]
gi|347737122|gb|AEP20532.1| transcription factor [Oryza sativa Japonica Group]
Length = 312
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++A LGL I D A ++++ +R R+ +A+ A L A R+ PRT
Sbjct: 108 AFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRT 167
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLN---- 245
++EI S+A +KEIG+ + + + L++ + +H + RFC+ L +N
Sbjct: 168 VKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAV 227
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
K+AQ E+ I RR+PISI+AA IY+ QL D +K +I TG+ E T+
Sbjct: 228 KAAQEAVQRSEELDI------RRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTI 281
Query: 306 RKVYKELLENWDDLLPSNY 324
R YK+L L+P+ Y
Sbjct: 282 RNSYKDLYPYASRLIPNTY 300
>gi|448728119|ref|ZP_21710451.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445797553|gb|EMA48024.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R S +R RS+E +AT+AL A R+
Sbjct: 138 NLQFALSEIDRMASALGVPRSVREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEG 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L L++ Q
Sbjct: 198 IPRSLEEISEVSRVNRKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELTLSEEVQ 254
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 255 SKANDIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 314
Query: 310 KELLE 314
+E +E
Sbjct: 315 QEQIE 319
>gi|448733008|ref|ZP_21715254.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445803341|gb|EMA53638.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 325
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R S +R RS+E +AT+AL A R+
Sbjct: 138 NLQFALSEIDRMASALGVPRSVREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEG 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L L++ Q
Sbjct: 198 IPRSLEEISEVSRVNRKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELTLSEEVQ 254
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 255 SKANDIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 314
Query: 310 KELLE 314
+E +E
Sbjct: 315 QEQIE 319
>gi|48478412|ref|YP_024118.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431060|gb|AAT43925.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 304
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 115/217 (52%), Gaps = 11/217 (5%)
Query: 98 RSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQII-DVASILGLDYDICDHA 156
R H Q+ + + + + S S NL LQ++ D S LG+ DI + A
Sbjct: 88 RIPHKNRAQIYRVRKWHQRIRVSNASER------NLSLALQLLNDDGSKLGIPKDIKESA 141
Query: 157 FQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKIL 216
++R +R RS+E++ AA+ A R+ PRTL EIS AA++ +K+IGK + L
Sbjct: 142 ALIYRKAVERNLIRGRSIESIVCAAIYAACRQVNIPRTLDEISKAADINKKKIGKAYRHL 201
Query: 217 GEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISA 275
+ L+L+ +P S ++ +FC L L+K + + I V + P ++A
Sbjct: 202 AKELKLNLKPTTPYS---YVSQFCNKLNLDKDVIIKSEEIIRRVNETGISAGKGPTGVAA 258
Query: 276 AAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
AAIY+A + K KTQ EI KV+G+TEVT+R YKE+
Sbjct: 259 AAIYIAAIISGKPKTQKEISKVSGVTEVTIRNRYKEI 295
>gi|292655630|ref|YP_003535527.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448291763|ref|ZP_21482468.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448540907|ref|ZP_21623828.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549383|ref|ZP_21627988.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555504|ref|ZP_21631544.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448571045|ref|ZP_21639556.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448585553|ref|ZP_21647946.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448603114|ref|ZP_21656935.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448623724|ref|ZP_21670081.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|291370098|gb|ADE02325.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445573768|gb|ELY28284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445709060|gb|ELZ60895.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712431|gb|ELZ64212.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445718249|gb|ELZ69952.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445722963|gb|ELZ74614.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445726253|gb|ELZ77870.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445746310|gb|ELZ97772.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445752252|gb|EMA03679.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 317
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 131 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L L++ Q
Sbjct: 191 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALDLSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 248 AKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|224138070|ref|XP_002322722.1| predicted protein [Populus trichocarpa]
gi|222867352|gb|EEF04483.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 11/199 (5%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ I ++ LGL I D A ++++ R R+ +AL A L A R+ +P
Sbjct: 106 ITAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKP 165
Query: 193 RTLQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAV--HMPRFCTLLQLN 245
RT++EI S+A +KEIG+ +K LG L+ Q + +I M RFC+ L ++
Sbjct: 166 RTVKEICSVANGATKKEIGRAKEYIVKQLG--LETGQSVEMGTIHAGDFMRRFCSNLGMS 223
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
AT V ++ F RR+PISI+AA IY+ QL D +K +I TG+ E T+
Sbjct: 224 NHTVKAATE--AVKTSEQFDIRRSPISIAAAVIYIITQLSDDKKPLRDISLATGVAEGTI 281
Query: 306 RKVYKELLENWDDLLPSNY 324
R YK+L + ++PS Y
Sbjct: 282 RNSYKDLYPHVSKIIPSWY 300
>gi|449465789|ref|XP_004150610.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
gi|449529834|ref|XP_004171903.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
Length = 312
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 103/197 (52%), Gaps = 11/197 (5%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++ LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 108 AFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
Query: 195 LQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAV--HMPRFCTLLQLNKS 247
++EI S+A +KEIG+ +K LG L+ Q + +I M RFC+ L +N
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLG--LETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
A A V ++ F RR+PISI+AA IY+ QL D +K +I TG+ E T+R
Sbjct: 226 AVKAAQEA--VQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRN 283
Query: 308 VYKELLENWDDLLPSNY 324
YK+L + +LP Y
Sbjct: 284 SYKDLYPHVSKILPGWY 300
>gi|303389676|ref|XP_003073070.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302214|gb|ADM11710.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
Length = 312
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 98/178 (55%), Gaps = 6/178 (3%)
Query: 148 LDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQK 207
L I D A +F++ L+ ++VE + A + A R+ + PRT +EIS+ V ++
Sbjct: 126 LSRTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEISVMTAVQKR 185
Query: 208 EIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTR 267
EIG+ K++ L+ +++ +I + RFC+ L LN Q +AT I +
Sbjct: 186 EIGRCFKLISPHLERMATMSTENI---IARFCSDLNLNIKIQKIATEIAKAAHELGCLAG 242
Query: 268 RNPISISAAAIYLACQL--EDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSN 323
++P SI+AA IY+ L E+KR Q +I VT +TEVT++ YKELL D++P N
Sbjct: 243 KSPDSIAAAVIYMVTNLFPEEKR-IQKDIQFVTNVTEVTIKNTYKELLAFKYDIIPEN 299
>gi|1729909|sp|P50387.1|TF2B_SULSH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|836952|gb|AAA81380.1| transcription factor TFIIB homolog [Sulfolobus shibatae]
Length = 309
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
SS+ + +A ++ + ++L L + D A ++R +R RS+E++ AA+ A
Sbjct: 114 SSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAA 173
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R + RTL EI+ +KE+ + ++L L +S P++ ++ R LL L+
Sbjct: 174 CRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVSVPVSDPK--DYVTRIANLLGLS 231
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
A I + ++P ++AAAIY+A L D+R+TQ EI +V G+TEVT+
Sbjct: 232 GRVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTV 291
Query: 306 RKVYKEL 312
R YKEL
Sbjct: 292 RNRYKEL 298
>gi|401826726|ref|XP_003887456.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
gi|337263124|gb|AEI69273.1| transcription initiation factor TFIIB [Encephalitozoon hellem]
gi|395459974|gb|AFM98475.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
Length = 312
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 148 LDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQK 207
L I D A +F++ L+ ++VE + A + A R+ + PRT +EIS+ V ++
Sbjct: 126 LSRTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEISVMTAVQKR 185
Query: 208 EIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTR 267
EIG+ K++ L+ +++ +I + RFC+ L LN Q +AT I +
Sbjct: 186 EIGRCFKLISPHLERMATMSTENI---IARFCSDLNLNIKIQKIATEIAKAAHELGCLAG 242
Query: 268 RNPISISAAAIYLACQL-EDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSN 323
++P SI+AA IY+ L +++K Q +I VT +TEVT++ YKEL+ D++P N
Sbjct: 243 KSPDSIAAAVIYMVTNLFPEEKKIQKDIQFVTNVTEVTIKNTYKELVAFKYDIIPEN 299
>gi|448420259|ref|ZP_21581021.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445673877|gb|ELZ26432.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 317
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 131 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L L++ Q
Sbjct: 191 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALGLSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 248 AKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|393246466|gb|EJD53975.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 349
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 24/229 (10%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ +I ++ L I D A QL++ LR +S++A+ A + A R+AQ PRT
Sbjct: 134 AFREISNMCDSFSLPKSISDIAKQLYKRADEEKLLRAKSLDAVIAACIFIACRQAQVPRT 193
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNS-----IAVHMP-----RFCTLLQL 244
+EI VP+K IG+ K L +A L+ N ++ +A P R+C L L
Sbjct: 194 FREICELTRVPKKIIGQCYKTLEQAFNLAPGANGSTNDRGIVAGTGPEDLLVRYCNHLGL 253
Query: 245 NKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
+ Q A+ I N+ R+P+SI+ AAI+ C L D+ K+ +I V G++E T
Sbjct: 254 PPNIQSYASDIIVEARNQGIAAGRSPVSIAGAAIFFTCHLLDQTKSVKDITGVAGVSEGT 313
Query: 305 LRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGE 353
L+ VYK L + + L+ + I +G+A ++ SGE
Sbjct: 314 LKLVYKLLYADREKLVKQEW--------------IDAGKASLDRLPSGE 348
>gi|448613430|ref|ZP_21663310.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740327|gb|ELZ91833.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 326
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 139 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRKEG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L L+K Q
Sbjct: 199 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELDLSKEVQ 255
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 256 SKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 315
Query: 310 KELLE 314
+E +E
Sbjct: 316 QEQIE 320
>gi|322369392|ref|ZP_08043957.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320551124|gb|EFW92773.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 287
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 100 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 159
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 160 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMKPVDPKK---YVPRFCSELELSEEVQ 216
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A +I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 217 SKANNIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 276
Query: 310 KELLE 314
+E +E
Sbjct: 277 QEQIE 281
>gi|448575781|ref|ZP_21642061.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448591050|ref|ZP_21650815.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445730722|gb|ELZ82310.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445734546|gb|ELZ86105.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 316
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 130 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L L++ Q
Sbjct: 190 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALNLSEEVQ 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 247 SKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 306
Query: 310 KELLE 314
+E +E
Sbjct: 307 QEQIE 311
>gi|356504767|ref|XP_003521166.1| PREDICTED: transcription initiation factor IIB-2-like [Glycine max]
Length = 306
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 10/215 (4%)
Query: 115 ELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSV 174
E LSSS + + + A+ I ++ LGL I D A ++++ R R+
Sbjct: 85 EFLSSSVGRWQNRGL---IVAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQ 141
Query: 175 EALATAALVQAIREAQEPRTLQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAV 233
+AL A L A R+ +PRT++EI S+A +KEIG+ + + + L L Q + +
Sbjct: 142 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLEQGQSVEIGTI 201
Query: 234 H----MPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
H M RFC+ L + A A V ++ F RR+PISI+AA IY+ QL D +K
Sbjct: 202 HAGDFMRRFCSNLGMTNQAVKAAQE--AVQKSEEFDIRRSPISIAAAVIYIITQLSDDKK 259
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNY 324
+I TG+ E T+R YK+L + ++PS Y
Sbjct: 260 PPKDISVATGVAEGTIRNSYKDLYPHVSKIIPSWY 294
>gi|335434083|ref|ZP_08558890.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898148|gb|EGM36265.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 334
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E + V +++ + + L L+L I A ++PRF + L+L+ +
Sbjct: 197 TPRSLDEFEPISRVRRQKYARAYRYLARQLELG--IAPADPAEYLPRFVSELELSDDLER 254
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + V + +NP ++A AIY A L R TQ E+ + ++EVT+R Y
Sbjct: 255 KARELLSAVKKTGQHSGKNPTGLAAGAIYAAGLLTGDRITQQEVAETADVSEVTIRDRYS 314
Query: 311 ELLE 314
ELLE
Sbjct: 315 ELLE 318
>gi|229581781|ref|YP_002840180.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.N.15.51]
gi|228012497|gb|ACP48258.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.N.15.51]
Length = 309
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
SS+ + +A ++ + ++L L + D A ++R +R RS+E++ AA+ A
Sbjct: 114 SSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAA 173
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R + RTL EI+ +KE+ + ++L L +S P++ ++ R LL L+
Sbjct: 174 CRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVSVPVSDPK--DYVTRIANLLGLS 231
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
+ A I + ++P ++AAAIY+A L D+R+TQ EI +V G+TEVT+
Sbjct: 232 GAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTV 291
Query: 306 RKVYKEL 312
R YKE+
Sbjct: 292 RNRYKEV 298
>gi|448730858|ref|ZP_21713162.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445793035|gb|EMA43630.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 334
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A ++R S +R RS+EA+AT AL A R+
Sbjct: 148 NLQFALSETDRMASALGVPRSVREVASVIYRRALSDDLIRGRSIEAVATGALYAACRKEG 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ A V QKEIG+ + + L+L +P + ++PRFC+ L L++ Q
Sbjct: 208 IPRSLEEVTHVARVEQKEIGRTYRYIARELELGMRPTDPQK---YVPRFCSALDLSEEVQ 264
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 265 SKANEVIEASVAEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 324
Query: 310 KELLE 314
+E +E
Sbjct: 325 QEQIE 329
>gi|448330825|ref|ZP_21520101.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610661|gb|ELY64430.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 320
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|429192472|ref|YP_007178150.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448325884|ref|ZP_21515262.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|429136690|gb|AFZ73701.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445613976|gb|ELY67661.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 320
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|313126498|ref|YP_004036768.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292863|gb|ADQ67323.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 317
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 131 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L L++ Q
Sbjct: 191 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALGLSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 248 AKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|289579995|ref|YP_003478461.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281233|ref|ZP_21472540.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448352650|ref|ZP_21541431.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448358870|ref|ZP_21547544.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|289529548|gb|ADD03899.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445579163|gb|ELY33559.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|445641929|gb|ELY95000.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445644550|gb|ELY97563.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 320
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|448306239|ref|ZP_21496148.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445598653|gb|ELY52708.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 320
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|435848097|ref|YP_007310347.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674365|gb|AGB38557.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 320
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|433639225|ref|YP_007284985.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377483|ref|ZP_21560179.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
gi|433291029|gb|AGB16852.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655427|gb|ELZ08272.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
Length = 320
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|284165857|ref|YP_003404136.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|336252199|ref|YP_004595306.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|448313767|ref|ZP_21503479.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|448350243|ref|ZP_21539062.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|448362255|ref|ZP_21550866.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|448369894|ref|ZP_21556347.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|448391654|ref|ZP_21566749.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
gi|284015512|gb|ADB61463.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|335336188|gb|AEH35427.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|445597077|gb|ELY51155.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445637750|gb|ELY90898.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|445648776|gb|ELZ01724.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|445650334|gb|ELZ03258.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|445665066|gb|ELZ17744.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
Length = 320
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|397772845|ref|YP_006540391.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448337167|ref|ZP_21526249.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448340531|ref|ZP_21529502.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|448346310|ref|ZP_21535196.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|448400256|ref|ZP_21571323.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|397681938|gb|AFO56315.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445626513|gb|ELY79856.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629964|gb|ELY83234.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445632899|gb|ELY86105.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445667796|gb|ELZ20436.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 320
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|448409173|ref|ZP_21574555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445673121|gb|ELZ25683.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 313
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +ATA L A R+
Sbjct: 127 NLQFALSEIDRMASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRQED 186
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E+S + V QKEIG+ + + + L L +P++ ++PRF + L+L++ Q
Sbjct: 187 IPRSLEEVSEVSRVEQKEIGRTYRYVAQELSLKMEPVDPKQ---YVPRFVSELELSEEVQ 243
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I +V K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 244 AKANEIIDVTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 303
Query: 310 KELLE 314
+E +E
Sbjct: 304 QEQIE 308
>gi|433590946|ref|YP_007280442.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334479|ref|ZP_21523654.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448385421|ref|ZP_21563927.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305726|gb|AGB31538.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445619811|gb|ELY73328.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445656916|gb|ELZ09748.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 320
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|448286652|ref|ZP_21477877.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445574029|gb|ELY28538.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 304
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 118 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEG 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L L++ Q
Sbjct: 178 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALGLSEEVQ 234
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 235 AKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 294
Query: 310 KELLE 314
+E +E
Sbjct: 295 QEQIE 299
>gi|448317588|ref|ZP_21507138.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445602979|gb|ELY56949.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 310
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 123 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 182
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 183 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 239
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 240 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 299
Query: 310 KELLE 314
+E +E
Sbjct: 300 QEQIE 304
>gi|448302993|ref|ZP_21492943.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594000|gb|ELY48167.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 310
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 123 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 182
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 183 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 239
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 240 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 299
Query: 310 KELLE 314
+E +E
Sbjct: 300 QEQIE 304
>gi|430811796|emb|CCJ30774.1| unnamed protein product [Pneumocystis jirovecii]
Length = 337
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 12/200 (6%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ AY +I + + L I D A Q+F+ + L+ RS E++ +A + A R+ + P
Sbjct: 121 MSAYREISAMCDAIHLPKSISDIAKQVFKRVDDSKALKGRSNESIISACIFIACRQGKAP 180
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPIN------------SNSIAVHMPRFCT 240
RT +EI NVP+KEIG+ K L + L + ++ S S M RFC
Sbjct: 181 RTFKEICTLTNVPKKEIGRVFKSLQKMLTDNNILDNTGKTDDSYVPSSTSPKDLMVRFCN 240
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L S Q+ A+ + + R+PISI+A+ IY+A L K EI +V G+
Sbjct: 241 RLSLPTSVQIAASELASRASVEGTLAGRSPISIAASGIYMASYLFQHPKLPREIAEVVGV 300
Query: 301 TEVTLRKVYKELLENWDDLL 320
++ T+R Y+ L + L+
Sbjct: 301 SDSTIRNAYRSLYVEREKLI 320
>gi|399574686|ref|ZP_10768445.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240518|gb|EJN61443.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 317
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 131 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L+L++ Q
Sbjct: 191 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALELSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 248 AKAVEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|448322503|ref|ZP_21511973.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445601261|gb|ELY55250.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 310
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 123 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 182
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 183 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 239
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 240 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 299
Query: 310 KELLE 314
+E +E
Sbjct: 300 QEQIE 304
>gi|399577766|ref|ZP_10771518.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399237208|gb|EJN58140.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 338
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 153 NLQFALSEMDRMASALGVPDSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEG 212
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L+L+K Q
Sbjct: 213 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASELELSKEVQ 269
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I +V K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 270 SKANEIIDVSAEKGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVASVAQVTEVTIRNRY 329
Query: 310 KELLE 314
+E +E
Sbjct: 330 QEQIE 334
>gi|383621854|ref|ZP_09948260.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448702704|ref|ZP_21700137.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445777265|gb|EMA28235.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 320
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L++ Q
Sbjct: 193 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKK---YVPRFCSELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 TKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|76801491|ref|YP_326499.1| transcription initiation factor TFB 1 [Natronomonas pharaonis DSM
2160]
gi|76557356|emb|CAI48933.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID ++S LG+ + + A ++R +R RS+E +ATAAL A R+
Sbjct: 136 NLQFALSEIDRMSSALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ A V QKEIG+ + + + L L +P++ ++PRFC+ L L++ +
Sbjct: 196 IPRSLDEVADVARVEQKEIGRTYRYIAQELSLGLEPVDP---VQYVPRFCSELGLSEEVE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
I EV K + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 253 QKTREIIEVTAEKGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRY 312
Query: 310 KELLE 314
+E +E
Sbjct: 313 QEQIE 317
>gi|15789546|ref|NP_279370.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235257|ref|YP_001688457.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195248|sp|Q9HSF7.1|TF2B7_HALSA RecName: Full=Transcription initiation factor IIB 7; Short=TFIIB 7
gi|10579892|gb|AAG18850.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726323|emb|CAP13104.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 323
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 136 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L + Q
Sbjct: 196 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMKPVDPKK---YVPRFCSELELTEEVQ 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 253 SKANEIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 312
Query: 310 KELLE 314
+E +E
Sbjct: 313 QEQIE 317
>gi|345005737|ref|YP_004808590.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321363|gb|AEN06217.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 318
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 132 NLQFALSEVDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEG 191
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L L++ Q
Sbjct: 192 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASELGLSEEVQ 248
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 249 SKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRY 308
Query: 310 KELLE 314
+E +E
Sbjct: 309 QEQIE 313
>gi|297829558|ref|XP_002882661.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
gi|297328501|gb|EFH58920.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I +A LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 108 AFKTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
Query: 195 LQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAV--HMPRFCTLLQLNKS 247
++EI S+A +KEIG+ +K LG L+ Q + +I M RFC+ L +
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLG--LETGQSVEMGTIHAGDFMRRFCS--NLGMT 223
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
Q + V ++ F RR+PISI+AA IY+ QL D++K +I TG+ E T+R
Sbjct: 224 NQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRN 283
Query: 308 VYKELLENWDDLLPSNY 324
YK+L + ++P+ Y
Sbjct: 284 SYKDLYPHLSKIIPAWY 300
>gi|110667821|ref|YP_657632.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803264|ref|YP_005839664.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625568|emb|CAJ51995.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728756|emb|CCC39917.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 317
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 131 NLQFALSEVDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L L++ Q
Sbjct: 191 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELRPVDPKQF---VPRFSSSLHLSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 248 SKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|452206957|ref|YP_007487079.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083057|emb|CCQ36340.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 318
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID ++S LG+ + + A ++R +R RS+E +ATAAL A R+
Sbjct: 132 NLQFALSEIDRMSSALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEG 191
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ A V QKEIG+ + + + L L +P++ ++PRFC+ L L++ +
Sbjct: 192 IPRSLDEVAEVARVEQKEIGRTYRYIAQELSLGLEPVDP---VQYVPRFCSELGLSEEVE 248
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
I EV K + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 249 QKTREIIEVTAEKGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRY 308
Query: 310 KELLE 314
+E +E
Sbjct: 309 QEQIE 313
>gi|399577427|ref|ZP_10771180.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399237810|gb|EJN58741.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 325
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 100/184 (54%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG ++ + A ++R +R RS+E +AT AL A+R
Sbjct: 138 NLQFALSEIDRMVSALGAPDNVQEMASVIYRRALDEDLIRGRSIEGVATGALHAAMRCEA 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL+E+S A V +G+ + L + L L ++ + ++PR+C+ L ++ +
Sbjct: 198 IPRTLEEVSDVARVDHNRVGRAYRHLSQELGLE--VSPTDPSQYVPRYCSALDVSSLVEQ 255
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
AT I + ++P +A+A+YLA L +++TQA++ V +TEVT+R Y+
Sbjct: 256 KATEIVADTTEEGLHAGKSPSGFAASAVYLASMLCGEKETQADVADVADVTEVTIRTRYQ 315
Query: 311 ELLE 314
E +E
Sbjct: 316 EQME 319
>gi|315230862|ref|YP_004071298.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183890|gb|ADT84075.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 299
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 1/206 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D +AS L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPKHVEEEAARLYREAVRRGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EI+ A V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEIGRSFRFIARNLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A + E N+ + ++P + AAA+Y+A LE +++
Sbjct: 207 KPTDYVNKFADELGLSEKVRRRAIELLEEAYNRGLTSGKSPAGLVAAALYIASLLEGEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLEN 315
TQ E+ +V +TEVT+R YKEL+E
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVEK 292
>gi|226482608|emb|CAX73903.1| Transcription factor IIB [Schistosoma japonicum]
Length = 286
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 2/200 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I + L L I DHA LF+ LR RS +A++TA L A R+ P
Sbjct: 86 LSAFREISQMGEHLNLPKSISDHANLLFKQVHETKNLRGRSNDAVSTACLYMACRQEGVP 145
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +E+ + V +KEIGK K + + L+ + + S ++ M RFC L LN + Q +A
Sbjct: 146 RTFKEVCAVSRVSKKEIGKVFKKILKILETN--VQSVTVEDFMSRFCGNLNLNITVQRVA 203
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ +N R+P+S++AAAIY+A RK + EI V G E T+ Y+ +
Sbjct: 204 NVVARRALNLNLVAGRSPVSVAAAAIYMAAYALGYRKEKREIGDVAGCAEATITCTYRAM 263
Query: 313 LENWDDLLPSNYTPAVPPEK 332
++L P + A+ PE+
Sbjct: 264 HLRANELFPEDVKLAIRPEE 283
>gi|57641215|ref|YP_183693.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|73919861|sp|Q5JGN1.1|TF2B1_PYRKO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|57159539|dbj|BAD85469.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 300
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D +AS L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+EA+ A + A R + PRTL EI+ + V +KEIG+ + + L L+
Sbjct: 147 RGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVDKKEIGRSFRFIARHLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A I E + + ++P + AAA+Y+A +E +++
Sbjct: 207 KPTDYVNKFADELGLSEKVRRRAIEILEEAYQRGLTSGKSPAGLVAAALYIASLMEGEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL+E + +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVEKLNLKVP 298
>gi|433441074|ref|ZP_20408566.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432187300|gb|ELK44608.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 208
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 22 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEG 81
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L L++ Q
Sbjct: 82 IPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASALDLSEEVQ 138
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 139 AKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 198
Query: 310 KELLE 314
+E +E
Sbjct: 199 QEQIE 203
>gi|409730080|ref|ZP_11271675.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448723223|ref|ZP_21705747.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445787965|gb|EMA38691.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 321
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 134 NLQFALSEIDRMASALGVPRSVREVASVIYRRSLAEDLIRGRSIEGVATSALYAACRKEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L L++ Q
Sbjct: 194 IPRSLEEISEVSRVNRKEIGRTYRYVSQELALEMRPVDPKK---YVPRFCSELTLSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 SKANDIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 310
Query: 310 KELLE 314
+E +E
Sbjct: 311 QEQIE 315
>gi|448737144|ref|ZP_21719196.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445804357|gb|EMA54614.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 305
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 118 NLQFALSEIDRMASALGVPRSVREVASVIYRRSLADDLIRGRSIEGVATSALYAACRKEG 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L L++ Q
Sbjct: 178 IPRSLEEISEVSRVERKEIGRTYRYVSQELALEMRPVDPKK---YVPRFCSELTLSEEVQ 234
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E ++ + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 235 AKANDIIETTADEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 294
Query: 310 KELLE 314
+E +E
Sbjct: 295 QEQIE 299
>gi|224090077|ref|XP_002308933.1| predicted protein [Populus trichocarpa]
gi|222854909|gb|EEE92456.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++ LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
Query: 195 LQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAV--HMPRFCTLLQLNKS 247
++EI S+A +KEIG+ +K LG L+ Q + +I M RFC+ L ++
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLG--LEAGQSVEMGTIHAGDFMRRFCSNLGMSNH 225
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
AT V ++ F RR+PISI+AA IY+ QL D +K +I TG+ E T+R
Sbjct: 226 TVKAATE--AVKTSEQFDIRRSPISIAAAVIYIITQLSDDKKPLRDISLATGVAEGTIRN 283
Query: 308 VYKELLENWDDLLPSNY 324
YK+L + ++P+ Y
Sbjct: 284 SYKDLYPHVSKIIPAWY 300
>gi|297827809|ref|XP_002881787.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
gi|297327626|gb|EFH58046.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 104/199 (52%), Gaps = 11/199 (5%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++A+ I ++ LGL I D A ++++ R R+ +AL A L A R+ +P
Sbjct: 106 IQAFKTIATMSERLGLVATIKDRANEIYKRLEDQKTTRGRNQDALYAACLYIACRQEDKP 165
Query: 193 RTLQEISIAAN-VPQKEIGK----YIKILGEALQLSQPINSNSIAV--HMPRFCTLLQLN 245
RT++EI + AN +KEIG+ +K LG L Q + +I M RFC+ L ++
Sbjct: 166 RTIKEICVIANGATKKEIGRAKDYIVKTLG--LDPGQSVELGTIHAGDFMRRFCSNLGMS 223
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
A A V ++ F RR+PISI+A IY+ QL D +KT +I TG+ E T+
Sbjct: 224 NHAVKAAQEA--VQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISTATGVAEGTI 281
Query: 306 RKVYKELLENWDDLLPSNY 324
R YK+L + + PS Y
Sbjct: 282 RNSYKDLYPHLAKIAPSWY 300
>gi|357159642|ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 312
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++A LGL I D A ++++ +R R+ +A+ A L A R+ PRT
Sbjct: 108 AFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRT 167
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLN---- 245
++EI S+A +KEIG+ + + + L++ + +H + RFC+ L +N
Sbjct: 168 VKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAV 227
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
K+AQ E+ I RR+PISI+AA IY+ QL + +K +I TG+ E T+
Sbjct: 228 KAAQEAVQRSEELDI------RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTI 281
Query: 306 RKVYKELLENWDDLLPSNY 324
R YK+L L+P+ Y
Sbjct: 282 RNSYKDLYPYASRLIPNTY 300
>gi|148907440|gb|ABR16853.1| unknown [Picea sitchensis]
Length = 313
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 7/197 (3%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ I ++ LGL I D A ++++ + +R R+ +A+ A L A R+ +P
Sbjct: 107 IMAFKTIGTMSDRLGLVATIKDRANEIYKKVEDSKSIRGRNQDAILAACLYIACRQEDKP 166
Query: 193 RTLQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKS 247
RT++EI S+A +KE+G+ +K L E + S + + + RFC+ L +
Sbjct: 167 RTVKEICSVANGASKKEVGRAKEFIVKQLEEEMGKSMEMGTIHAGDFLRRFCSHLGMGHQ 226
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
A AT V ++ RR+PISI+AAAIY+ QL +++K +I + TG+ E T+R
Sbjct: 227 AVKAATEA--VKKSEELDIRRSPISIAAAAIYMISQLSEEKKLLRDISRATGVAEGTIRN 284
Query: 308 VYKELLENWDDLLPSNY 324
YK+L + L+P +
Sbjct: 285 SYKDLYPHAARLIPDWF 301
>gi|1841399|emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana]
Length = 301
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I +A LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 97 AFKTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 156
Query: 195 LQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAV--HMPRFCTLLQLNKS 247
++EI S+A +KEIG+ +K LG L+ Q + +I M RFC+ L +
Sbjct: 157 VKEICSVANGATKKEIGRAKEYIVKQLG--LETGQLVEMGTIHAGDFMRRFCS--NLGMT 212
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
Q + V ++ F RR+PISI+AA IY+ QL D++K +I TG+ E T+R
Sbjct: 213 NQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRN 272
Query: 308 VYKELLENWDDLLPSNY 324
YK+L + ++P+ Y
Sbjct: 273 SYKDLYPHLSKIIPAWY 289
>gi|448482042|ref|ZP_21605256.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821444|gb|EMA71235.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 130 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L+L++ Q
Sbjct: 190 IPRSLEEISEVSRVDRKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELELSEEVQ 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 247 SKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 306
Query: 310 KELLE 314
+E +E
Sbjct: 307 QEQIE 311
>gi|448425078|ref|ZP_21582707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448510576|ref|ZP_21615953.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448522305|ref|ZP_21618428.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445681338|gb|ELZ33772.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445695849|gb|ELZ47948.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702249|gb|ELZ54207.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 317
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 130 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L+L++ Q
Sbjct: 190 IPRSLEEISEVSRVDRKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELELSEEVQ 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 247 SKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 306
Query: 310 KELLE 314
+E +E
Sbjct: 307 QEQIE 311
>gi|161528132|ref|YP_001581958.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339433|gb|ABX12520.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 302
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 142/323 (43%), Gaps = 48/323 (14%)
Query: 2 KCPYCSAAQGRCATT-STGRSITECGSCGRVIAE---------RQCQNHHLFHIRAQDTP 51
KCP C +G T +TG + CG+CG VI E R N RA P
Sbjct: 10 KCPRC--GKGTLVTDPNTGENF--CGACGFVITEKVEESGPEWRSFSNEGENKSRA-GVP 64
Query: 52 LCLVTSD--LPSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAE 109
L D L ++ PQ D TG S S + LR+ S S
Sbjct: 65 TSLAMHDMGLATVINPQNRDA--------TGKPLTASMKSTIER---LRTWDSRSQVHEP 113
Query: 110 LERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCL 169
++R F S +D L+ L + D + + A ++R +
Sbjct: 114 VDRNFRQAFSE---------LDRLKDKLAVGDA---------VIEKAAYIYRKALEKGLV 155
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+ AL +AL A R+ + PRTL++I A+N+ +K+I + ++L L L P+ +
Sbjct: 156 RGRSISALIASALYAACRDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLKMPV-VD 214
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
I + R + L++ + AT I + ++P+ ++AAA+Y+AC + K
Sbjct: 215 PIKC-ISRIASKAGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGENK 273
Query: 290 TQAEICKVTGLTEVTLRKVYKEL 312
TQ ++ + G+TEVT+R YK L
Sbjct: 274 TQRDVAEAAGVTEVTIRNRYKGL 296
>gi|351724605|ref|NP_001238343.1| transcription initiation factor IIB [Glycine max]
gi|1351222|sp|P48513.1|TF2B_SOYBN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|945087|gb|AAB09756.1| transcription factor TFIIB [Glycine max]
Length = 313
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 107/200 (53%), Gaps = 13/200 (6%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++A+ I ++ LGL I D A ++++ R R+ +AL A L A R+ +P
Sbjct: 107 IQAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKP 166
Query: 193 RTLQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSI---AVH----MPRFCTLLQL 244
RT++EI S+A +KEIG+ + + + L L N N++ +H M RFC+ L +
Sbjct: 167 RTVKEICSVANGATKKEIGRAKEYIVKQLGLE---NGNAVEMGTIHAGDFMRRFCSNLCM 223
Query: 245 NKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
N A A V ++ F RR+PISI+AA IY+ QL D +K +I TG+ E T
Sbjct: 224 NNQAVKAAQEA--VQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGT 281
Query: 305 LRKVYKELLENWDDLLPSNY 324
+R YK+L + ++P+ Y
Sbjct: 282 IRNSYKDLYPHVSKIIPNWY 301
>gi|15228267|ref|NP_187644.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
gi|21363045|sp|Q9SS44.1|TF2B2_ARATH RecName: Full=Transcription initiation factor IIB-2; AltName:
Full=General transcription factor TFIIB-2;
Short=AtTFIIB2
gi|6056193|gb|AAF02810.1|AC009400_6 transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|15215784|gb|AAK91437.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|16974427|gb|AAL31139.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|21593436|gb|AAM65403.1| transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|39545880|gb|AAR28003.1| TFIIB2 [Arabidopsis thaliana]
gi|332641371|gb|AEE74892.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
Length = 312
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I +A LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 108 AFKTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
Query: 195 LQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAV--HMPRFCTLLQLNKS 247
++EI S+A +KEIG+ +K LG L+ Q + +I M RFC+ L +
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLG--LETGQLVEMGTIHAGDFMRRFCS--NLGMT 223
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
Q + V ++ F RR+PISI+AA IY+ QL D++K +I TG+ E T+R
Sbjct: 224 NQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRN 283
Query: 308 VYKELLENWDDLLPSNY 324
YK+L + ++P+ Y
Sbjct: 284 SYKDLYPHLSKIIPAWY 300
>gi|448726653|ref|ZP_21709047.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
gi|445793983|gb|EMA44547.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
Length = 305
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+AL A R+
Sbjct: 118 NLQFALSEIDRMASALGVPRSVREVASVIYRRSLADDLIRGRSIEGVATSALYAACRKEG 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L L++ Q
Sbjct: 178 IPRSLEEISEVSRVERKEIGRTYRYVSQELALEMRPVDPKK---YVPRFCSELTLSEEVQ 234
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 235 AKANDIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 294
Query: 310 KELLE 314
+E +E
Sbjct: 295 QEQIE 299
>gi|326531378|dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 312
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 15/199 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++A LGL I D A ++++ +R R+ +A+ A L A R+ PRT
Sbjct: 108 AFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRT 167
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLN---- 245
++EI S+A +KEIG+ + + + L++ + +H + RFC+ L +N
Sbjct: 168 VKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAV 227
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
K+AQ E+ I RR+PISI+AA IY+ QL + +K +I TG+ E T+
Sbjct: 228 KAAQEAVQRSEELDI------RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTI 281
Query: 306 RKVYKELLENWDDLLPSNY 324
R YK+L L+P++Y
Sbjct: 282 RNSYKDLYPYAARLIPNSY 300
>gi|448498359|ref|ZP_21610792.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445698780|gb|ELZ50819.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 130 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L+L++ Q
Sbjct: 190 IPRSLEEISEVSRVDRKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELELSEEVQ 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 247 SKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 306
Query: 310 KELLE 314
+E +E
Sbjct: 307 QEQIE 311
>gi|357509669|ref|XP_003625123.1| Transcription initiation factor IIB [Medicago truncatula]
gi|355500138|gb|AES81341.1| Transcription initiation factor IIB [Medicago truncatula]
Length = 313
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 8/196 (4%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I +A LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 108 AFKTIGTMAERLGLVPTIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIA-VH----MPRFCTLLQLNKSA 248
++EI SIA +KEIG+ + + + L L S + +H M RFC+ L +N A
Sbjct: 168 VKEICSIANGATKKEIGRAKEYIVKQLGLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQA 227
Query: 249 QVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV 308
A V ++ F RR+PISI+AA IY+ QL D +K +I TG+ E T+R
Sbjct: 228 VKAAQE--SVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNS 285
Query: 309 YKELLENWDDLLPSNY 324
YK+L + ++P+ Y
Sbjct: 286 YKDLYPHVSKIIPNWY 301
>gi|448454975|ref|ZP_21594377.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445814355|gb|EMA64320.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 345
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 107/182 (58%), Gaps = 5/182 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 164 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEG 223
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L+L++ Q
Sbjct: 224 IPRSLDEVADVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASSLELSEEVQ 280
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 281 SKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 340
Query: 310 KE 311
+E
Sbjct: 341 QE 342
>gi|225441886|ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|297739630|emb|CBI29812.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 7/195 (3%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++ LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRT 167
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLNKSAQ 249
++EI S+A +KEIG+ + + + L+ + + +H M RFC+ L + Q
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCS--NLGMTNQ 225
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V+ V ++ F RR+P+SI+AA IY+ QL D++K +I TG+ E T+R Y
Sbjct: 226 VVKAAQEAVQKSEEFDIRRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSY 285
Query: 310 KELLENWDDLLPSNY 324
K+L + ++PS Y
Sbjct: 286 KDLYPHISKIIPSWY 300
>gi|147790475|emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]
Length = 312
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 7/195 (3%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++ LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRT 167
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLNKSAQ 249
++EI S+A +KEIG+ + + + L+ + + +H M RFC+ L + Q
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCS--NLGMTNQ 225
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V+ V ++ F RR+P+SI+AA IY+ QL D++K +I TG+ E T+R Y
Sbjct: 226 VVKAAQEAVQKSEEFDIRRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSY 285
Query: 310 KELLENWDDLLPSNY 324
K+L + ++PS Y
Sbjct: 286 KDLYPHISRIIPSWY 300
>gi|448450737|ref|ZP_21592470.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445811248|gb|EMA61256.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 317
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 130 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L+L++ Q
Sbjct: 190 IPRSLEEISEVSRVDRKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELELSEEVQ 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 247 SKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 306
Query: 310 KELLE 314
+E +E
Sbjct: 307 QEQIE 311
>gi|448434664|ref|ZP_21586438.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|448531800|ref|ZP_21621088.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445684660|gb|ELZ37033.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445707005|gb|ELZ58873.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 130 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L+L++ Q
Sbjct: 190 IPRSLEEISEVSRVDRKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELELSEEVQ 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 247 SKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 306
Query: 310 KELLE 314
+E +E
Sbjct: 307 QEQIE 311
>gi|443927143|gb|ELU45667.1| transcription initiation factor IIB [Rhizoctonia solani AG-1 IA]
Length = 354
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 146/349 (41%), Gaps = 68/349 (19%)
Query: 25 CGSCGRVIAER------QCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQP 78
CG CG V+ +R +C+ H F D P + + P + +Q D V F+
Sbjct: 52 CGDCGLVLGDRIVDTRSECECPHTFANDEGDDPSRVGAATNPLLEGIEQLDTVIS--FKD 109
Query: 79 TGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ 138
G SG EL+R + + + MM A+
Sbjct: 110 GG-----------------------SGMARELQRA---AARGSVGKNERNMMT---AFRD 140
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I + + L ++ D A QL++ +R +S +A+ ++ A R+A PRT +EI
Sbjct: 141 ISAMCESISLPKNVSDTAKQLYKRAEEEKIVRGKSADAVVACCILIACRQANVPRTFKEI 200
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPI-----------NSNSIAVHMPRFCTLLQLNKS 247
VP+K +G+ K +A LS+P + S + R+C L L+ S
Sbjct: 201 HQLTRVPKKTLGQCFKAFEQAFDLSRPAPADGQDGAGPASGTSAENLLNRYCNQLHLHAS 260
Query: 248 AQVLATHIGEVVI---NKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
+ T EVV+ N R+PISI+ AAIY L + K+ +IC V G++E T
Sbjct: 261 ---VVTACEEVVVTARNHGIADGRSPISIAGAAIYFTSYLLGQGKSAKDICSVAGVSEST 317
Query: 305 LRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGE 353
++ VYK L + + L+ + + SGRA ++ +GE
Sbjct: 318 IKLVYKILWQEREKLVKKEW--------------LDSGRAVMDRLPNGE 352
>gi|68164351|gb|AAY87167.1| hypothetical transcription initiation factor IIB-like protein
variant #3 [Sulfolobus islandicus]
gi|68164353|gb|AAY87168.1| hypothetical transcription initiation factor IIB-like protein
variant #1 [Sulfolobus islandicus]
Length = 187
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 2/180 (1%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+ ++L L + D A ++R +R RS+E++ AA+ A R + RTL EI+
Sbjct: 10 IGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQY 69
Query: 202 ANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVIN 261
+KE+ + ++L L +S P++ ++ R LL L+ + A I +
Sbjct: 70 TKANRKEVARCYRLLLRELDVSVPVSDPKD--YVTRIANLLGLSGAVMKTAAEIIDKAKG 127
Query: 262 KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
++P ++AAAIY+A L D+R+TQ EI +V G+TEVT+R YKEL + +P
Sbjct: 128 SGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYKELTQELKISIP 187
>gi|350525782|ref|YP_004885404.1| transcription initiation factor B [Thermococcus sp. AM4]
gi|345650601|gb|AEO13966.1| Transcription initiation factor B [Thermococcus sp. AM4]
Length = 300
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D +AS L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLPRHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EI+ + V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVDKKEIGRSFRFIARHLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A + E K + ++P + AAA+Y+A +E +R+
Sbjct: 207 KPTDYVSKFADELGLSEKVRRRAIELLEEAYEKGLTSGKSPAGLVAAALYIAGIMEGERR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL+E + +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELIEKLNLKVP 298
>gi|448492136|ref|ZP_21608730.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445691595|gb|ELZ43779.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 317
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 130 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L+L++ Q
Sbjct: 190 IPRSLEEISEVSRVDRKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELELSEEVQ 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 247 SKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 306
Query: 310 KELLE 314
+E +E
Sbjct: 307 QEQIE 311
>gi|337263062|gb|AEI69242.1| transcription initiation factor TFIIB [Encephalitozoon romaleae]
gi|396081581|gb|AFN83197.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
romaleae SJ-2008]
Length = 312
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 148 LDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQK 207
L I D A +F++ L+ ++VE + A + A R+ + PRT +EIS+ V ++
Sbjct: 126 LSRTIIDRAHYIFKNIEERKLLKGKNVEGIVAACMYIACRQEECPRTFKEISVMTAVQKR 185
Query: 208 EIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTR 267
EIG+ K++ L+ +++ +I + RFC+ L L+ Q +AT I +
Sbjct: 186 EIGRCFKLISPHLERMATMSTENI---IARFCSDLNLSIKIQKIATEIAKAAHELGCLAG 242
Query: 268 RNPISISAAAIYLACQL-EDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSN 323
++P SI+AA IY+ L +++K Q +I VT +TEVT++ YKEL+ D++P N
Sbjct: 243 KSPDSIAAAVIYMVTNLFPEEKKIQKDIQFVTNVTEVTIKNTYKELVAFKYDIIPEN 299
>gi|225464249|ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|296088031|emb|CBI35314.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 7/195 (3%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++ LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRT 167
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLNKSAQ 249
++EI S+A +KEIG+ + + + L+ + + +H M RFC+ L + Q
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCS--NLGMTNQ 225
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V+ V ++ F RR+P+SI+AA IY+ QL D++K +I TG+ E T+R Y
Sbjct: 226 VVKAAQEAVQKSEEFDIRRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSY 285
Query: 310 KELLENWDDLLPSNY 324
K+L + ++PS Y
Sbjct: 286 KDLYPHISRIIPSWY 300
>gi|284163770|ref|YP_003402049.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|448388030|ref|ZP_21564970.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|284013425|gb|ADB59376.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|445670681|gb|ELZ23278.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 319
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSEIDRMASSLGIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L +P++ + PRFC+ L L++ Q
Sbjct: 194 IPRSLEEVAAVSRVERKEIGRTYRYVAQELSLEMEPVDPKQ---YTPRFCSELDLSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I + K + ++P +AAAIY A L +++KTQ EI +V +TEVT+R Y
Sbjct: 251 AKATEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREIAEVAQVTEVTIRNRY 310
Query: 310 KELLE 314
+E +E
Sbjct: 311 QEQIE 315
>gi|448732993|ref|ZP_21715239.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445803326|gb|EMA53623.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 351
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L ID +AS LGL I + A ++R L RSVE+++ AAL A R++
Sbjct: 160 NLRHGLGEIDRMASALGLPASIRETASVIYRRVIDENLLIGRSVESVSAAALYAATRQST 219
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
R+L I A + ++ IG+ + + L L I H+PR C++L L+ +
Sbjct: 220 SARSLDGIVTVARMDKQSIGRTYRYISRELGLE--IEPPDPTDHLPRLCSVLDLSTEIEQ 277
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
+ + E+ I + +NP+ ++AAA+Y L ++ TQ+ I +V +++VT+R Y+
Sbjct: 278 QSRELLEIAIAAEAISGKNPVGLAAAAVYAGSLLCKEKVTQSSISEVASVSKVTIRNRYQ 337
Query: 311 ELLE 314
ELL+
Sbjct: 338 ELLD 341
>gi|242045402|ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
gi|241923949|gb|EER97093.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
Length = 312
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++A LGL I D A ++++ +R R+ +A+ A L A R+ PRT
Sbjct: 108 AFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRT 167
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLN---- 245
++EI S+A +KEIG+ + + + L++ + +H + RFC+ L +N
Sbjct: 168 VKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAV 227
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
K+AQ E+ I RR+PISI+AA IY+ QL + +K +I TG+ E T+
Sbjct: 228 KAAQEAVQRSEELDI------RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTI 281
Query: 306 RKVYKELLENWDDLLPSNY 324
R YK+L L+P+ Y
Sbjct: 282 RNSYKDLYPYAARLIPNTY 300
>gi|390961741|ref|YP_006425575.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390520049|gb|AFL95781.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 299
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D +AS L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPRHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + + R + PRTL EI+ + V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYASCRLLKVPRTLDEIADISRVDKKEIGRSFRFIARNLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A I E K + ++P + AAA+Y+A LED+++
Sbjct: 207 KPTDYVNKFADELGLSERVRRRAIAILEEAYEKGLTSGKSPAGLVAAALYIAGLLEDEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL++ + +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVDKLNLKIP 298
>gi|240103255|ref|YP_002959564.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910809|gb|ACS33700.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 300
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D +AS L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLPRHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EI+ + V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVDKKEIGRSFRFIARHLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A + E K + ++P + AAA+Y+A +E +R+
Sbjct: 207 KPTDYVSKFADELGLSEKVRRRAIELLEEAYEKGLTSGKSPAGLVAAALYIAGIMEGERR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL+E + +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELIEKLNLKVP 298
>gi|256082789|ref|XP_002577635.1| transcription initiation factor iib [Schistosoma mansoni]
gi|353230219|emb|CCD76390.1| putative transcription initiation factor iib [Schistosoma mansoni]
Length = 308
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 2/200 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I + L L I DHA LF+ LR RS +A++TA L A R+ P
Sbjct: 108 LSAFREISQMGEHLNLPKSISDHANLLFKQVHETKNLRGRSNDAVSTACLYMACRQEGVP 167
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +E+ + V +KEIGK K + + L+ + + S ++ M RFC L LN + Q +A
Sbjct: 168 RTFKEVCAVSRVSKKEIGKVFKKILKILETN--VQSVTVEDFMSRFCGNLNLNIAVQRVA 225
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ +N R+P+S++AAAIY+A RK + EI V G E T+ Y+ +
Sbjct: 226 NVVARRALNLNLVAGRSPVSVAAAAIYMAAYALGYRKEKREIGDVAGCAEATITCTYRAM 285
Query: 313 LENWDDLLPSNYTPAVPPEK 332
+L P + A+ P++
Sbjct: 286 HSRASELFPEDVRLAIRPDE 305
>gi|256082791|ref|XP_002577636.1| transcription initiation factor IIB (TFIIB) [Schistosoma mansoni]
gi|353230220|emb|CCD76391.1| putative transcription initiation factor IIB (TFIIB) [Schistosoma
mansoni]
Length = 286
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 2/200 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I + L L I DHA LF+ LR RS +A++TA L A R+ P
Sbjct: 86 LSAFREISQMGEHLNLPKSISDHANLLFKQVHETKNLRGRSNDAVSTACLYMACRQEGVP 145
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +E+ + V +KEIGK K + + L+ + + S ++ M RFC L LN + Q +A
Sbjct: 146 RTFKEVCAVSRVSKKEIGKVFKKILKILETN--VQSVTVEDFMSRFCGNLNLNIAVQRVA 203
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ +N R+P+S++AAAIY+A RK + EI V G E T+ Y+ +
Sbjct: 204 NVVARRALNLNLVAGRSPVSVAAAAIYMAAYALGYRKEKREIGDVAGCAEATITCTYRAM 263
Query: 313 LENWDDLLPSNYTPAVPPEK 332
+L P + A+ P++
Sbjct: 264 HSRASELFPEDVRLAIRPDE 283
>gi|421975925|gb|AFX72995.1| Transcription factor IIB [Spirometra erinaceieuropaei]
Length = 286
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 104/198 (52%), Gaps = 2/198 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ +I +A L L I D A LF+ LR RS +A++TA L A R+ + PRT
Sbjct: 88 AFREISQMAERLNLPKTISDRANLLFKQVYETRNLRGRSNDAVSTACLYMACRQEKVPRT 147
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+E+ + V +KEIGK K + L+ + + + S+ M RFC L LN + Q +A
Sbjct: 148 FKEVCAVSKVSKKEIGKVFKKILNILETN--VQAVSVDDFMSRFCANLHLNITVQQVANV 205
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ +N + R+P+S++AAAIY+A RK + EI +V G E T+ Y+ +
Sbjct: 206 VARRALNLNLVSGRSPVSVAAAAIYMAAYALGCRKEEREIGEVAGCAEATITCTYRAMHA 265
Query: 315 NWDDLLPSNYTPAVPPEK 332
+L P + AV PE+
Sbjct: 266 RASELFPDDVRLAVRPEQ 283
>gi|356570450|ref|XP_003553400.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 296
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 7/184 (3%)
Query: 146 LGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI-SIAANV 204
LGL I D A ++++ R R+ +AL A L A R+ +PRT++EI S+A
Sbjct: 103 LGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 162
Query: 205 PQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLNKSAQVLATHIGEVVI 260
+KEIG+ + + + L L Q + +H M RFC+ L + A A V
Sbjct: 163 TKKEIGRAKEYIVKQLGLEQGQSVEMGTIHAGDFMRRFCSNLGMTNQAVKAAQEA--VQK 220
Query: 261 NKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
++ F RR+PISI+AA IY+ QL D +K +I TG+ E T+R YK+L + ++
Sbjct: 221 SEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKII 280
Query: 321 PSNY 324
PS Y
Sbjct: 281 PSWY 284
>gi|386875527|ref|ZP_10117689.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806627|gb|EIJ66084.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 302
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 140/323 (43%), Gaps = 48/323 (14%)
Query: 2 KCPYCSAAQGRCAT-TSTGRSITECGSCGRVIAE---------RQCQNHHLFHIRAQDTP 51
KCP C QG T +TG + CG CG VI + R N RA P
Sbjct: 10 KCPRC--GQGTLVTDANTGENF--CGKCGFVITDKVEESGPEWRSFSNEGENKSRA-GVP 64
Query: 52 LCLVTSD--LPSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAE 109
L D L ++ PQ D TG + S + LR+ S S
Sbjct: 65 TSLAMHDMGLATVINPQNRDA--------TGKPLTAAMKSTIER---LRTWDSRSQVHEP 113
Query: 110 LERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCL 169
++R F S +D L+ L + D + + A ++R +
Sbjct: 114 VDRNFRQAFSE---------LDRLKDKLAVGD---------SVIEKAAYIYRKALEKGLV 155
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+ AL +AL A R+ + PRTL++I A+N+ +K+I + ++L L L P+
Sbjct: 156 RGRSISALIASALYAACRDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLKMPVVDP 215
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
+ R + L++ + AT I + + ++P+ ++AAA+Y+AC + K
Sbjct: 216 VKCIS--RIASKAGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENK 273
Query: 290 TQAEICKVTGLTEVTLRKVYKEL 312
TQ ++ + G+TEVT+R YK L
Sbjct: 274 TQRDVAEAAGVTEVTIRNRYKGL 296
>gi|389852789|ref|YP_006355023.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
gi|388250095|gb|AFK22948.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
Length = 261
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 1/206 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D + S L L + + A +L+R+ +
Sbjct: 48 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRITSQLKLPKHVEEEAARLYREAVRKGLI 107
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EIS A V +KEIG+ + + L L+
Sbjct: 108 RGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYRFIARNLNLTPKKLFV 167
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A I E + + ++P + AAA+Y+A LE +++
Sbjct: 168 KPTDYVNKFADELGLSEKVRRRAIEILEEAYRRGLTSGKSPAGLVAAALYIASLLEGEKR 227
Query: 290 TQAEICKVTGLTEVTLRKVYKELLEN 315
TQ E+ +V +TEVT+R YKEL+E
Sbjct: 228 TQREVAEVARVTEVTVRNRYKELVEK 253
>gi|55376957|ref|YP_134807.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448634689|ref|ZP_21675087.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448640892|ref|ZP_21677679.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651198|ref|ZP_21680267.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448678748|ref|ZP_21689755.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448689160|ref|ZP_21694897.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229682|gb|AAV45101.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445749662|gb|EMA01107.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445761417|gb|EMA12665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445770725|gb|EMA21783.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445772735|gb|EMA23780.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779030|gb|EMA29972.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 319
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +ATA L A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E+S + V QKEIG+ + + + L+L +P++ ++PRF + L+L++ Q
Sbjct: 193 IPRSLEEVSDVSRVEQKEIGRTYRYVAQELELKMEPVDPKQ---YVPRFASELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 SKANEIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|344211069|ref|YP_004795389.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448667562|ref|ZP_21686062.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343782424|gb|AEM56401.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445770130|gb|EMA21198.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 319
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +ATA L A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E+S + V QKEIG+ + + + L+L +P++ ++PRF + L+L++ Q
Sbjct: 193 IPRSLEEVSDVSRVEQKEIGRTYRYVAQELELKMEPVDPKQ---YVPRFASELELSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 SKANEIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|346465163|gb|AEO32426.1| hypothetical protein [Amblyomma maculatum]
Length = 268
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I ++A + L I D + LF+ L+ RS +A+A+A L A R+ P
Sbjct: 114 LNAFREISNMADRINLTKTIVDRSNLLFKQVHDGKTLKGRSNDAIASACLYIACRQEGVP 173
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + V +KEIG+ K++ +AL+ S ++ + M RFC+ L L S Q A
Sbjct: 174 RTFKEICAVSKVSKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLGLPSSVQKAA 231
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
THI + R+PIS++AAAIY+A Q + +K
Sbjct: 232 THIARKAVELDIVPGRSPISVAAAAIYMASQASEDKK 268
>gi|448396803|ref|ZP_21569251.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673332|gb|ELZ25893.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 321
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A ++R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASSLGIPRSVREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E+S + V +KEIG+ + + + L L +P+N ++PRFC+ L+L++ Q
Sbjct: 194 IPRSLEEVSGVSRVERKEIGRTYRYVAQELGLEMEPVNPKK---YVPRFCSELELSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 AKANEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRY 310
Query: 310 KELLE 314
+E +E
Sbjct: 311 QEQIE 315
>gi|257388719|ref|YP_003178492.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171026|gb|ACV48785.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 317
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+ L A R+
Sbjct: 131 NLQFALSEIDRMASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATSCLYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E+S + V QKEIG+ + + + L+L +P++ ++PRF + L+L++ Q
Sbjct: 191 IPRSLEEVSDVSRVEQKEIGRTYRYVAQELKLKMEPVDPKQ---YVPRFASELELSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 248 SKANEIIDVTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|118780388|ref|XP_310127.3| AGAP009559-PA [Anopheles gambiae str. PEST]
gi|116131050|gb|EAA05855.3| AGAP009559-PA [Anopheles gambiae str. PEST]
Length = 315
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 4/193 (2%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ + I +A + I HA +F+ L +RS+EA++ A L A R+ P
Sbjct: 110 MFGFAMIATMAERINAPASIVSHAKTIFKQALEPAALTHRSLEAVSVACLYIACRQEGVP 169
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVL 251
RT +E+ + +KEIG+ K++ + L S I S M RFC+ L L Q
Sbjct: 170 RTFKEMCAVCSASKKEIGRCFKLITKVLATSLDHITSEDF---MQRFCSKLFLPHEVQKA 226
Query: 252 ATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 311
ATHI + R+PIS++AAAIY+A Q+ + + + G+ E+T+++ YK
Sbjct: 227 ATHIAQKAFEADLVPDRSPISVAAAAIYMASQVSATAMSLKAVAAIAGVAELTIKQSYKL 286
Query: 312 LLENWDDLLPSNY 324
+ + +L P +
Sbjct: 287 MHPHAWELFPRTH 299
>gi|448384057|ref|ZP_21563055.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445659046|gb|ELZ11858.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 321
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS L + + + A ++R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L +P+N ++PRFC+ L+L++ Q
Sbjct: 194 IPRSLEEVAAVSRVERKEIGRTYRYIAQELGLEMEPVNPKK---YVPRFCSELELSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V A I +V K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 VKANEIIDVTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRY 310
Query: 310 KELLE 314
+E +E
Sbjct: 311 QEQIE 315
>gi|340344517|ref|ZP_08667649.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519658|gb|EGP93381.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 302
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 140/323 (43%), Gaps = 48/323 (14%)
Query: 2 KCPYCSAAQGRCAT-TSTGRSITECGSCGRVIAE---------RQCQNHHLFHIRAQDTP 51
+CP C QG T +TG + CG CG VI + R N RA P
Sbjct: 10 RCPRC--GQGTLVTDATTGENF--CGKCGFVITDKVDESGPEWRSFSNEGENKSRA-GVP 64
Query: 52 LCLVTSD--LPSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAE 109
L D L ++ PQ D TG + S + LR+ S S
Sbjct: 65 TSLAMHDMGLATVINPQNRDA--------TGKPLTSAMKSTIER---LRTWDSRSQVHEP 113
Query: 110 LERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCL 169
++R F S +D L+ L + D + + A ++R +
Sbjct: 114 VDRNFRQAFSE---------LDRLKDKLAVGDA---------VIEKAAYIYRKALEKGLV 155
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+ AL +AL A R+ + PRTL++I A+N+ +K+I + ++L L L P+
Sbjct: 156 RGRSISALIASALYAACRDTETPRTLKDIGHASNIKRKDIARCYRLLLRELNLKMPVVDP 215
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
+ R + L++ + AT I + + ++P+ ++AAA+Y+AC + K
Sbjct: 216 VKCI--SRIASKAGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENK 273
Query: 290 TQAEICKVTGLTEVTLRKVYKEL 312
TQ ++ + G+TEVT+R YK L
Sbjct: 274 TQRDVAEAAGVTEVTIRNRYKGL 296
>gi|20094057|ref|NP_613904.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|19887040|gb|AAM01834.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 341
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 114 FELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNR 172
F L S+ + N+R+ +++I+ V S + I D A +++R +R R
Sbjct: 93 FRRLKRWDRWISNDPVSRNIRSAVELIERVCSQANIPRSIVDEAIRIYRKAVEKDLVRGR 152
Query: 173 SVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIA 232
S+E A AAL A ++ + PRT++EI+ + K+I + ++L L P +
Sbjct: 153 SIENTAAAALFMACKKRKHPRTIKEIAKLFGITPKDINRTHRVLLRHLNERMP--APDPK 210
Query: 233 VHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK----- 287
++ RF T L +++ ++LA I E K RNP ++ AA+YLA L+ K
Sbjct: 211 QYLSRFATELGVSEDVEMLAREILEKAEKKGLTVSRNPAGLAGAALYLAGLLKAKEYIEE 270
Query: 288 ----------------------------RKTQAEICKVTGLTEVTLRKVYKELLE 314
R+TQ E+ K++G+TEVT+R YKEL E
Sbjct: 271 YREKMKEAESEEEKEKLERELNEKLRTCRRTQPEVAKISGVTEVTIRNRYKELAE 325
>gi|407462999|ref|YP_006774316.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046621|gb|AFS81374.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 289
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 100/182 (54%), Gaps = 3/182 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L ++ + + L ++ + A L+R +R RS+ A+ A++ A R+ +
Sbjct: 100 NLRQALGELTRIKDKIALSTNVLEKAAYLYRKALEKKLVRGRSISAMIAASIYAACRDTE 159
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL++++ AANV +K+I + ++L L+L P+ NSI + R + L+L++ +
Sbjct: 160 TPRTLKDVADAANVKRKDIARCYRLLHHELELKMPV-VNSIQC-ISRISSKLELSEKIKR 217
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + N ++P+ ++A A+Y+AC TQ ++ + G+TEVT+R YK
Sbjct: 218 HAIKVLQEAQNNKESAGKDPMGLAATALYIACLKHGGSITQRDLAEAAGVTEVTIRNRYK 277
Query: 311 EL 312
L
Sbjct: 278 GL 279
>gi|341583086|ref|YP_004763578.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810744|gb|AEK73901.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 299
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 111/212 (52%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D +AS L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPRHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + + R + PRTL EI+ + V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYASCRLLKVPRTLDEIADISRVDKKEIGRSFRFIARNLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L +++ + A I E ++ + ++P + AAA+Y+A LED+++
Sbjct: 207 KPTDYVNKFADELGMSERVRRRAIAILEEAYDRGLTSGKSPAGLVAAALYIAGLLEDEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL++ + +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVDKLNLKIP 298
>gi|452206067|ref|YP_007486189.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082167|emb|CCQ35419.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 342
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L ID +AS LGL I + A ++R LR RS+E +A A+L A R
Sbjct: 153 NLRHALGEIDRMASALGLPEPIRETASVIYRRALDEDLLRGRSIEGMAAASLYAASRLDG 212
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQP-INSNSIAVHMPRFCTLLQLNKSAQ 249
R++ EI+ + V EI + + + L L P + N ++ RF + L ++ +
Sbjct: 213 VARSIDEIATVSRVDDLEIKRAYRYIDRELGLETPPAHPNE---YLGRFASELDCEEATE 269
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
LA + E + + ++P+ I+A+A+Y A +L ++ TQA I + ++EVT+R Y
Sbjct: 270 RLARDLAETAVEAAVHSGKSPVGIAASALYAASRLRNEGLTQAAISETANVSEVTIRNRY 329
Query: 310 KELLE 314
+E+LE
Sbjct: 330 REVLE 334
>gi|448330751|ref|ZP_21520030.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445611255|gb|ELY65015.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 321
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS L + + + A ++R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L +P+N ++PRFC+ L+L++ Q
Sbjct: 194 IPRSLEEVAAVSRVERKEIGRTYRYVAQELNLEMEPVNPKK---YVPRFCSELELSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V A I +V K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 VKANEIIDVTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRY 310
Query: 310 KELLE 314
+E +E
Sbjct: 311 QEQIE 315
>gi|448298042|ref|ZP_21488075.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445592249|gb|ELY46438.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 296
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A ++R +R RS+E +AT+ L A R
Sbjct: 109 NLQFALSETDRMASSLGIPRSVREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEG 168
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L +P+N ++PRFC+ L+L++ Q
Sbjct: 169 IPRSLEEVAAVSRVERKEIGRTYRYVAQELGLEMEPVNPKK---YVPRFCSELELSEEVQ 225
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V A I + K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 226 VKANEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRY 285
Query: 310 KELLE 314
+E +E
Sbjct: 286 QEQIE 290
>gi|433592681|ref|YP_007282177.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448335120|ref|ZP_21524272.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307461|gb|AGB33273.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618056|gb|ELY71640.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 321
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS L + + + A ++R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L +P+N ++PRFC+ L+L++ Q
Sbjct: 194 IPRSLEEVAAVSRVERKEIGRTYRYIAQELGLEMEPVNPKK---YVPRFCSELELSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V A I +V K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 VKANEIIDVTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRY 310
Query: 310 KELLE 314
+E +E
Sbjct: 311 QEQIE 315
>gi|68164349|gb|AAY87166.1| hypothetical transcription initiation factor IIB-like protein
variant #2 [Sulfolobus islandicus]
Length = 187
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 2/180 (1%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+ ++L L + D A ++R +R RS+E++ AA+ A R + RTL EI+
Sbjct: 10 IGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQY 69
Query: 202 ANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVIN 261
+KE+ ++L L +S P++ ++ R LL L+ + A I +
Sbjct: 70 TKANRKEVAXCYRLLLRELDVSVPVSDPKD--YVTRIANLLGLSGAVMKTAAEIIDKAKG 127
Query: 262 KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
++P ++AAAIY+A L D+R+TQ EI +V G+TEVT+R YKEL + +P
Sbjct: 128 SGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYKELTQELKISIP 187
>gi|393796884|ref|ZP_10380248.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 302
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 139/322 (43%), Gaps = 46/322 (14%)
Query: 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIAE---------RQCQNHHLFHIRAQDTPL 52
+CP C QG T +T + CG CG VI E R N RA P
Sbjct: 10 RCPRC--GQGTLVTDATT-AENFCGKCGFVITEKVDESGPEWRSFSNEGENKSRA-GVPT 65
Query: 53 CLVTSD--LPSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAEL 110
L D L ++ PQ D TG + S + LR+ S S +
Sbjct: 66 SLAMHDMGLATVINPQNRDA--------TGKPLTSAMKSTIER---LRTWDSRSQVHEPV 114
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLR 170
+R F S +D L+ L + D + + A ++R +R
Sbjct: 115 DRNFRQAFSE---------LDRLKDKLAVGDA---------VIEKAAYIYRKALEKGLVR 156
Query: 171 NRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNS 230
RS+ AL +AL A R+ + PRTL++I A+N+ +K+I + ++L L L P+
Sbjct: 157 GRSISALIASALYAACRDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLKMPVVDPV 216
Query: 231 IAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKT 290
+ R + L++ + AT I + + ++P+ ++AAA+Y+AC + KT
Sbjct: 217 KCIS--RIASKAGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGESKT 274
Query: 291 QAEICKVTGLTEVTLRKVYKEL 312
Q ++ + G+TEVT+R YK L
Sbjct: 275 QRDVAEAAGVTEVTIRNRYKGL 296
>gi|242398518|ref|YP_002993942.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
gi|242264911|gb|ACS89593.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
Length = 299
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D + + L L + + A +L+RD +
Sbjct: 87 EKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLPKHVEEEAARLYRDAVKKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EI+ A V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYAACRLLKIPRTLDEIADMAKVDKKEIGRSFRFIARNLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A + + V N + ++P + AAA+Y+A LE +++
Sbjct: 207 KPTDYVNKFADELGLSERTRRRAIELLDQVYNMGLTSGKSPAGLVAAALYIAGLLEGEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ + +TEVT+R YKE++E LP
Sbjct: 267 TQREVAEAARVTEVTVRNRYKEMVEKLGLKLP 298
>gi|168039347|ref|XP_001772159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676490|gb|EDQ62972.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 106/201 (52%), Gaps = 9/201 (4%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I +A LGL I D A ++++ +R RS +A+ A L A R+ +PRT
Sbjct: 106 AFRSIGTMADRLGLVSTIKDRANEIYKKVEDLKSIRGRSQDAILAACLYIACRQEDKPRT 165
Query: 195 LQ-EI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLNKSA 248
+ EI S+A +K+IG+ K + + L+ I+ +H + RFC+ L + +
Sbjct: 166 FKAEICSVANGASKKDIGRATKFIVKQLEEDMGISMEMGTIHAGDFLRRFCSHLNMENNE 225
Query: 249 QVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRK 307
AT V ++ R++PIS++AAAIY+ QL +K +K +I +V G+ EVT+R
Sbjct: 226 VRAATET--VKKSEMLDIRKSPISVAAAAIYMISQLNEKDKKALKDISRVAGVAEVTIRN 283
Query: 308 VYKELLENWDDLLPSNYTPAV 328
YK+L + L+P + V
Sbjct: 284 SYKDLYPHAAKLIPDWFLKEV 304
>gi|14520892|ref|NP_126367.1| transcription initiation factor IIB [Pyrococcus abyssi GE5]
gi|13878809|sp|Q9V0V5.1|TF2B_PYRAB RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|5458109|emb|CAB49598.1| TATA box binding protein TFIIB-BBRE complex, chain B [Pyrococcus
abyssi GE5]
gi|380741440|tpe|CCE70074.1| TPA: transcription initiation factor IIB [Pyrococcus abyssi GE5]
Length = 300
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D + + L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EIS A V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYRFIARNLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A I E + + ++P + AAA+Y+A LE +++
Sbjct: 207 KPTDYVNKFADELGLSEKVRRRAIEILEEAYKRGLTSGKSPAGLVAAALYIASLLEGEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL+E +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVEKLGIKVP 298
>gi|407464509|ref|YP_006775391.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047697|gb|AFS82449.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 302
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 140/323 (43%), Gaps = 48/323 (14%)
Query: 2 KCPYCSAAQGRCAT-TSTGRSITECGSCGRVIAE---------RQCQNHHLFHIRAQDTP 51
KCP C +G T +TG + CG CG VI + R N RA P
Sbjct: 10 KCPRC--GKGTLVTDANTGENF--CGKCGFVITDKVEESGPEWRSFSNEGENKSRA-GVP 64
Query: 52 LCLVTSD--LPSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAE 109
L D L ++ PQ D TG + S + LR+ S S
Sbjct: 65 TSLAMHDMGLATVINPQNRDA--------TGKPLTAAMKSTIER---LRTWDSRSQVHEP 113
Query: 110 LERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCL 169
++R F S +D L+ L + D + + A ++R +
Sbjct: 114 VDRNFRQAFSE---------LDRLKDKLAVGD---------SVIEKAAYIYRKALEKGLV 155
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+ AL +AL A R+ + PRTL++I A+N+ +K+I + ++L L L P+
Sbjct: 156 RGRSISALIASALYAACRDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLKMPVVDP 215
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
+ R + L++ + AT I + + ++P+ ++AAA+Y+AC + K
Sbjct: 216 VKCIS--RIASKAGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENK 273
Query: 290 TQAEICKVTGLTEVTLRKVYKEL 312
TQ ++ + G+TEVT+R YK L
Sbjct: 274 TQRDVAEAAGVTEVTIRNRYKGL 296
>gi|14591268|ref|NP_143345.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|6647871|sp|O59151.1|TF2B_PYRHO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|3257906|dbj|BAA30589.1| 300aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 300
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D + + L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EIS A V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYRFIARNLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A I E + + ++P + AAA+Y+A LE +++
Sbjct: 207 KPTDYVNKFADELGLSEKVRRRAIEILEEAYRRGLTSGKSPAGLVAAALYIASLLEGEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL+E +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVEKLGIKVP 298
>gi|356500515|ref|XP_003519077.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 314
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 107/202 (52%), Gaps = 21/202 (10%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++ LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 110 AFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 169
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSI---AVH----MPRFCTLLQLN- 245
++EI S+A +KEIG+ + + + L L N N++ +H M RFC+ L +N
Sbjct: 170 VKEICSVANGATKKEIGRAKEYIVKQLGLE---NGNAVEMGTIHAGDFMRRFCSNLCMNN 226
Query: 246 ---KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
K+AQ A H E F RR+PISI+AA IY+ QL D +K +I TG+ E
Sbjct: 227 QAVKAAQE-AVHKSEE-----FDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAE 280
Query: 303 VTLRKVYKELLENWDDLLPSNY 324
T+R YK+L + ++P+ Y
Sbjct: 281 GTIRNSYKDLYPHVSKIIPNWY 302
>gi|16081990|ref|NP_394404.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195242|sp|Q9HJM2.1|TF2B2_THEAC RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10640260|emb|CAC12074.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 307
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 107/183 (58%), Gaps = 5/183 (2%)
Query: 132 NLRAYLQII-DVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ++ D+ + LG+ DI + A ++R +R RS+E++ A++ A R+
Sbjct: 118 NLSLALQLLNDIGAKLGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVN 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PRTL EIS A+ V +K+IGK + L + L L+ +P S ++ +FC L L+K A
Sbjct: 178 IPRTLDEISKASEVNKKKIGKAYRHLAKELDLNLKPTTPFS---YISQFCNKLDLDKQAI 234
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V++ I ++ + + P I+AAAIY+A K +TQ EI +++G+TEVT+R Y
Sbjct: 235 VISEDIVRQAMSMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRY 294
Query: 310 KEL 312
KE+
Sbjct: 295 KEI 297
>gi|257051641|ref|YP_003129474.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256690404|gb|ACV10741.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 330
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 139 NLKQALGEIDRMASALGLPENVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI + + + E+ + + + L L QP + S ++PRF + L+LN+
Sbjct: 199 NPRSLDEIERVSRIGRMELTRTYRYVVRELNLEVQPADPES---YVPRFVSDLELNEEVS 255
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ I+AAAIY A L ++R TQ EI +V ++EVT+R Y
Sbjct: 256 RRARELVDSARKEGVLSGKSPVGIAAAAIYAAALLSNERVTQGEISEVADISEVTIRNRY 315
Query: 310 KELLE 314
KELLE
Sbjct: 316 KELLE 320
>gi|226503255|ref|NP_001149721.1| transcription initiation factor IIB [Zea mays]
gi|195629762|gb|ACG36522.1| transcription initiation factor IIB [Zea mays]
gi|414590059|tpg|DAA40630.1| TPA: transcription initiation factor IIB [Zea mays]
Length = 312
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 7/195 (3%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++A LGL I D A ++F+ +R R+ +A+ A L A R+ PRT
Sbjct: 108 AFRTIANMADRLGLVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRT 167
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLNKSAQ 249
++EI S+A +KEIG+ + + + L++ + +H + RFC+ L + A
Sbjct: 168 VKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAV 227
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A V ++ RR+PISI+AA IY+ QL + +K +I TG+ E T+R Y
Sbjct: 228 NAAKE--AVQRSEELDIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSY 285
Query: 310 KELLENWDDLLPSNY 324
K+L L+P+ Y
Sbjct: 286 KDLYPYASRLIPNTY 300
>gi|332157709|ref|YP_004422988.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
gi|331033172|gb|AEC50984.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
Length = 300
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D + + L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEEEAARLYREAVRRGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EIS A V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYRFIARNLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A I E + + ++P + AAA+Y+A LE +++
Sbjct: 207 KPTDYVNKFADELGLSERVRRRAIEILEEAYKRGLTSGKSPAGLVAAALYIASLLEGEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL+E +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVEKLGIKVP 298
>gi|407462158|ref|YP_006773475.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045780|gb|AFS80533.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 302
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 141/323 (43%), Gaps = 48/323 (14%)
Query: 2 KCPYCSAAQGRCAT-TSTGRSITECGSCGRVIAE---------RQCQNHHLFHIRAQDTP 51
+CP C +G T +TG + CG CG VI + R N RA P
Sbjct: 10 RCPRC--GKGTLVTDANTGENF--CGKCGFVITDKVEESGPEWRSFSNEGENKSRA-GVP 64
Query: 52 LCLVTSD--LPSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAE 109
L D L ++ PQ D TG S S + LR+ S S
Sbjct: 65 TSLAMHDMGLATVINPQNRDA--------TGKPLTASMKSTIER---LRTWDSRSQVHEP 113
Query: 110 LERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCL 169
++R F S +D L+ L + D + + A ++R +
Sbjct: 114 VDRNFRQAFSE---------LDRLKDKLAVGDA---------VIEKAAYIYRKALEKGLV 155
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+ AL +AL A R+ + PRTL++I A+N+ +K+I + ++L L L P+ +
Sbjct: 156 RGRSISALIASALYAACRDTETPRTLKDIGQASNIKRKDIARCYRLLLRELNLKMPV-VD 214
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
I + R + L++ + AT I + ++P+ ++AAA+Y+AC + K
Sbjct: 215 PIKC-ISRIASKAGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGENK 273
Query: 290 TQAEICKVTGLTEVTLRKVYKEL 312
TQ ++ + G+TEVT+R YK L
Sbjct: 274 TQRDVAEAAGVTEVTIRNRYKGL 296
>gi|448321963|ref|ZP_21511437.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602545|gb|ELY56520.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 108/182 (59%), Gaps = 5/182 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A L+R ++ RS+E +AT L A R
Sbjct: 134 NLQFALSETDRMASGLGIPRSVREVASVLYRRALERDLIQGRSIEGVATGTLYAACRLEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E+++ + V +KEIG+ + + + L+L ++P++ ++PRFC+ L+L+ + Q
Sbjct: 194 MPRSLEEVAMVSRVDRKEIGRTYRYIAKELELGTKPVDPKQ---YVPRFCSELELSPTVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A+ I + K + ++P +AAAIY++ D+++TQ E+ V+ +TEVT+RK Y
Sbjct: 251 AKASEIIDTTAKKGILSGKSPTGYAAAAIYISALFCDEKRTQREVADVSQVTEVTIRKRY 310
Query: 310 KE 311
+E
Sbjct: 311 QE 312
>gi|337283805|ref|YP_004623279.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
gi|334899739|gb|AEH24007.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
Length = 300
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 1/206 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D + + L L + + A +L+R+ +
Sbjct: 87 EKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEEEAARLYREAVRRGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EIS + V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYAACRLLKVPRTLDEISDISRVDKKEIGRSYRFIARNLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A I E K + ++P + AAA+Y+A LE +++
Sbjct: 207 KPTDYVNKFADELGLSEKVRRKAVEILEEAYRKGLTSGKSPAGLVAAALYIASLLEGEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLEN 315
TQ E+ +V +TEVT+R YKEL+E
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVEK 292
>gi|321470098|gb|EFX81075.1| hypothetical protein DAPPUDRAFT_50412 [Daphnia pulex]
Length = 324
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I ++A + L + D A LF++ L+ S +A+A+ L A R+ PRT
Sbjct: 121 AYNEISNMAVNINLPRTVVDRANCLFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRT 180
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQV--- 250
+EI + +KE+G+ K++ +AL+ S I + + +PRFC+ L + + +
Sbjct: 181 FKEICALTKIDKKELGRCYKLIPKALETSVDVIPRITTSDFIPRFCSNLGMQLTKVIFLN 240
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
++ HIG + R+P+S++AAAIY+A +K+ T+ I +TG+ +VT+R++++
Sbjct: 241 VSLHIGLKAVELDVVPGRSPLSVAAAAIYMASLASEKKLTKKAIGDITGVADVTIRQLHE 300
Query: 311 ELLENWDDLLPSNY 324
+ +L P +
Sbjct: 301 LMYPRAAELFPPEF 314
>gi|269862742|ref|XP_002650958.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065357|gb|EED43100.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 213
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 97/178 (54%), Gaps = 4/178 (2%)
Query: 152 ICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211
I D A +F+D S L+ +++E A + A + PRT +EIS+ VP++EIGK
Sbjct: 32 IIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEISVITVVPKREIGK 91
Query: 212 YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPI 271
K++ + + ++ + + I + RFC+ L LN Q A +I + V + R+P
Sbjct: 92 CYKLISKEIDTTRIMATADI---VGRFCSDLNLNAKIQNTARYIAKKVQDIGCLAGRSPD 148
Query: 272 SISAAAIYLA-CQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAV 328
SI++A IYL C D Q +I VT +T+VT+R YK+LL +++P +T AV
Sbjct: 149 SIASAIIYLTLCLYPDFLFLQKDIQYVTNVTDVTIRNTYKDLLPYKKEIIPEEFTTAV 206
>gi|448336354|ref|ZP_21525454.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629246|gb|ELY82538.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 321
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS L + + + A ++R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L +P+N ++PRFC+ L+L++ Q
Sbjct: 194 IPRSLEEVAAVSRVERKEIGRTYRYVAQELNLEMEPVNPKK---YVPRFCSELELSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V A I + K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 VKANEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRY 310
Query: 310 KELLE 314
+E +E
Sbjct: 311 QEQIE 315
>gi|433593418|ref|YP_007296159.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448333396|ref|ZP_21522596.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307928|gb|AGB33739.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445622834|gb|ELY76276.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 320
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +ATA L A R
Sbjct: 134 NLQFALSEIDRMASALGIPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRREG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EI+ + V +KEIG+ + + + L L+ +P++ ++PRFC+ L +++ Q
Sbjct: 194 IPRSLEEIADVSRVERKEIGRTYRYIAQELSLAMEPVDPKE---YVPRFCSELDSSETVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I + + + ++P +AAAIY A L ++++TQ E+ V +TEVT+R Y
Sbjct: 251 AKATEIIDTTAEQGLLSGKSPTGFAAAAIYAASLLCNEKRTQKEVAAVAQVTEVTIRNRY 310
Query: 310 KELLE 314
+E +E
Sbjct: 311 QEQIE 315
>gi|397772462|ref|YP_006540008.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342670|ref|ZP_21531616.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397681555|gb|AFO55932.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445625065|gb|ELY78435.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 321
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS L + + + A ++R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L +P+N ++PRFC+ L+L++ Q
Sbjct: 194 IPRSLEEVAAVSRVERKEIGRTYRYVAQELNLEMEPVNPKK---YVPRFCSELELSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V A I + K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 VKANEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRY 310
Query: 310 KELLE 314
+E +E
Sbjct: 311 QEQIE 315
>gi|269862513|ref|XP_002650868.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065496|gb|EED43190.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 311
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 4/178 (2%)
Query: 152 ICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211
I D A +F+D S L+ +++E A + A + PRT +EIS+ VP++EIGK
Sbjct: 130 IIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEISVITVVPKREIGK 189
Query: 212 YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPI 271
K++ + + + + + I + RFC+ L LN Q A +I + V + R+P
Sbjct: 190 CYKLISKEIDTTGIMATADI---VGRFCSDLNLNAKIQNTARYIAKKVQDIGCLAGRSPD 246
Query: 272 SISAAAIYLA-CQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAV 328
SI++A IYL C D Q +I VT +T+VT+R YK+LL +++P +T AV
Sbjct: 247 SIASAIIYLTLCLYPDFLFLQKDIQYVTNVTDVTIRNTYKDLLPYKKEIIPEEFTTAV 304
>gi|331746825|ref|YP_004422862.1| Transcription initiation factor B [Thermococcus barophilus MP]
gi|315185036|gb|ADT85220.1| Transcription initiation factor B [Thermococcus barophilus MP]
Length = 301
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 1/206 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D +AS L L + + A +L+R+ +
Sbjct: 90 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPRHVEEEAARLYREAIRKGLI 149
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EI+ A V +KEI + + + L L+
Sbjct: 150 RGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEIARSFRFIARNLNLTPKKLFV 209
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A + E N+ + ++P + AAA+Y+A LE +++
Sbjct: 210 KPTDYVNKFADELGLSEKVRRRAIELLEEAYNRGLTSGKSPAGLVAAALYIASLLEGEKR 269
Query: 290 TQAEICKVTGLTEVTLRKVYKELLEN 315
TQ E+ +V +TEVT+R YKEL+E
Sbjct: 270 TQREVAEVARVTEVTVRNRYKELVEK 295
>gi|255544920|ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223547429|gb|EEF48924.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 108/201 (53%), Gaps = 15/201 (7%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++A+ I ++ LGL I D A ++++ LR R+ +A+ A L A R+ +P
Sbjct: 106 IQAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKPLRGRNQDAVLAACLYIACRQEDKP 165
Query: 193 RTLQEI-SIAANVPQKEIGKYIKILGEALQ--LSQPINSNSIAV--HMPRFCTLLQLN-- 245
RT++EI S+A +KEIG+ + + + L+ L Q + +I + RFC+ L +N
Sbjct: 166 RTVKEICSVANGATKKEIGRAKEYIVKQLEVELGQSMEMGTIHAGDFLRRFCSHLGMNNQ 225
Query: 246 --KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
K+AQ E+ I RR+PISI+AA IY+ QL +++K +I TG+ E
Sbjct: 226 AVKAAQEAVKKSEELDI------RRSPISIAAAIIYMITQLSEEKKLLKDISTSTGVAEG 279
Query: 304 TLRKVYKELLENWDDLLPSNY 324
T+R YK+L ++PS Y
Sbjct: 280 TIRNSYKDLYPYASRIVPSWY 300
>gi|448579977|ref|ZP_21644806.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445722650|gb|ELZ74307.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 325
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +ATA L A R+
Sbjct: 138 NLQFALSEIDRMASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRKEG 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EI+ + V +KEIG+ + + + L L +P++ ++PRF + L L+K Q
Sbjct: 198 IPRSLEEIAEVSRVERKEIGRTYRYVSQELGLEMRPVDPKK---YVPRFSSELDLSKEVQ 254
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 255 SKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 314
Query: 310 KELLE 314
+E +E
Sbjct: 315 QEQIE 319
>gi|76803041|ref|YP_331136.1| transcription initiation factor TFB 6 [Natronomonas pharaonis DSM
2160]
gi|76558906|emb|CAI50502.2| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 329
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A +R +R RS+E ATA L A R+
Sbjct: 143 NLQFALSEIDRMASALGVPRSVREVASVTYRRALDEDLIRGRSIEGAATATLYAACRQES 202
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ A V QKEIG+ + L + L L +P + ++PRFC+ L L+++ +
Sbjct: 203 IPRSLDEVAEVARVEQKEIGRTYRYLSQELGLEIKPADPKE---YVPRFCSELALSEAVE 259
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
I +V + + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 260 QKTREIIDVTAEEGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRY 319
Query: 310 KELLE 314
+E +E
Sbjct: 320 QEQIE 324
>gi|448301515|ref|ZP_21491508.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584251|gb|ELY38575.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 331
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 105/184 (57%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATAAL A+R+A
Sbjct: 139 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGMATAALYAAVRQAG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR++ E++ + VP E+ + + L L L P+ ++PR+ +LL+++ +
Sbjct: 199 LPRSIDELATVSRVPYLEVARSYRYLVRELDL--PMAPPDPLEYLPRYASLLEISNETER 256
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + E I+ + ++P+ ++AAAIY A +L D TQ ++ T +++VT+R Y+
Sbjct: 257 QAHSLLEDGIDAGLHSGKHPVGLAAAAIYAANRLTDAGLTQDDVSAATDISKVTIRNRYQ 316
Query: 311 ELLE 314
ELLE
Sbjct: 317 ELLE 320
>gi|448473771|ref|ZP_21601913.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819283|gb|EMA69132.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 353
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 110/190 (57%), Gaps = 5/190 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 164 NLKQALGEVDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAG 223
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L QP + S ++PRF + L L+ A+
Sbjct: 224 TPRSLDEIAAVSRVEKDEIARTYRYVVRELKLEIQPADPES---YVPRFASDLGLSDEAE 280
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 281 RRARSLLDTAKAQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRY 340
Query: 310 KELLENWDDL 319
ELLE DD+
Sbjct: 341 HELLEAEDDV 350
>gi|351707653|gb|EHB10572.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 185
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%)
Query: 187 REAQE--PRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQL 244
RE QE PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L
Sbjct: 36 RERQEEVPRTFKEICAVSQISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCL 93
Query: 245 NKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
Q+ ATHI + R+PIS++AAAIY+A Q +++TQ E + G+ VT
Sbjct: 94 PNQVQMAATHIACKAVELDLVLGRSPISVAAAAIYMASQASAEKRTQKETGDIAGVANVT 153
Query: 305 LRKVYKELLENWDDLLPSNYTPAVPPEK 332
+R+ Y+ + DL PS++ P K
Sbjct: 154 IRQSYRLIYLRAPDLFPSDFKFDTPVGK 181
>gi|302766794|ref|XP_002966817.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
gi|300164808|gb|EFJ31416.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
Length = 310
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 7/197 (3%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ I +A LGL I D A ++++ +R RS +A+ A L A R+ +P
Sbjct: 104 LLAFKTIGTMADRLGLVSTIKDRADEIYKKVEDMKSIRGRSQDAILAACLYIACRQEDKP 163
Query: 193 RTLQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKS 247
RT +EI S+A +KEIG+ +K L E + S + S + RFC+ L +
Sbjct: 164 RTFKEIHSVANGATKKEIGRATNFIVKRLEEEMGKSMSMGSIHAGDFLRRFCSHLGMTNQ 223
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
A AT + V + R++PISI+AAAIY+ Q+ + +K EI +V G+ E T++
Sbjct: 224 AVRAATDTVKKV--EELDIRKSPISIAAAAIYMISQVSEDKKPLKEISRVAGVAEATIKN 281
Query: 308 VYKELLENWDDLLPSNY 324
+ L + L+P Y
Sbjct: 282 SFNYLRPHATRLVPDWY 298
>gi|432328340|ref|YP_007246484.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135049|gb|AGB04318.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 313
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 110/183 (60%), Gaps = 5/183 (2%)
Query: 132 NLRAYLQ-IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ + +V+S +GL D+ + A ++R +R RS+E++ A++ A R+
Sbjct: 124 NLSVALQELNNVSSKMGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVG 183
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PRTL E++ A+ + +K+IG+ + L + L L+ +P +NS ++ +FC+ L+L+K+
Sbjct: 184 MPRTLDEVAKASELNKKKIGRAYRHLTKELNLNLKPTTANS---YITQFCSKLRLDKNVV 240
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + + P ++AAAIY+A + ++ +TQ EI +V G+TEVT+R Y
Sbjct: 241 NKAEEIVQKATDVGITSGKGPTGVAAAAIYIAANMLNEPRTQKEIAEVAGVTEVTIRNRY 300
Query: 310 KEL 312
KE+
Sbjct: 301 KEI 303
>gi|448439550|ref|ZP_21588114.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691084|gb|ELZ43279.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 346
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 131 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VPQKEIG+ + + + L L +P++ +PRF + L+L++ Q
Sbjct: 191 IPRSLDEVADVSRVPQKEIGRTYRYISQELGLELKPVDPKQF---VPRFASSLELSEEVQ 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
AT I +V + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R
Sbjct: 248 SKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRXYA 307
Query: 310 KELLEN 315
LL N
Sbjct: 308 ASLLCN 313
>gi|302755524|ref|XP_002961186.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
gi|300172125|gb|EFJ38725.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
Length = 300
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 7/197 (3%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ I +A LGL I D A ++++ +R RS +A+ A L A R+ +P
Sbjct: 94 LLAFKTIGTMADRLGLVSTIKDRADEIYKKVEDMKSIRGRSQDAILAACLYIACRQEDKP 153
Query: 193 RTLQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKS 247
RT +EI S+A +KEIG+ +K L E + S + S + RFC+ L +
Sbjct: 154 RTFKEIHSVANGATKKEIGRATNFIVKRLEEEMGKSMSMGSIHAGDFLRRFCSHLGMTNQ 213
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
A AT + V + R++PISI+AAAIY+ Q+ + +K EI +V G+ E T++
Sbjct: 214 AVRAATDTVKKV--EELDIRKSPISIAAAAIYMISQVSEDKKPLKEISRVAGVAEATIKN 271
Query: 308 VYKELLENWDDLLPSNY 324
+ L + L+P Y
Sbjct: 272 SFNYLRPHATRLVPDWY 288
>gi|45954|emb|CAA50006.1| transcription factor IIB [Pyrococcus woesei]
Length = 261
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 3/222 (1%)
Query: 101 HSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQL 159
S SG + E + + L + S NL L +D + + L L + + A +L
Sbjct: 40 RSLSGLMRE--KMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPRHVEEEAARL 97
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R+ +R RS+E++ A + A R + PRTL EI+ A V +KEIG+ + +
Sbjct: 98 YREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARN 157
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L L+ ++ +F L L++ + A I + + + ++P + AAA+Y
Sbjct: 158 LNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALY 217
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
+A LE +++TQ E+ +V +TEVT+R YKEL+E +P
Sbjct: 218 IASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKVP 259
>gi|448589961|ref|ZP_21650020.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735076|gb|ELZ86629.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 325
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LG+ + + A ++R +R RS+E +ATA L A R+
Sbjct: 138 NLQFALSEVDRMASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRKEG 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EI+ + V +KEIG+ + + + L L +P++ ++PRF + L L+K Q
Sbjct: 198 IPRSLEEIAEVSRVERKEIGRTYRYVSQELGLEMRPVDPKK---YVPRFSSELDLSKEVQ 254
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 255 SKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 314
Query: 310 KELLE 314
+E +E
Sbjct: 315 QEQIE 319
>gi|119889896|ref|XP_001254280.1| PREDICTED: transcription initiation factor IIB-like [Bos taurus]
Length = 149
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 2/142 (1%)
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
+P + EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L K Q+
Sbjct: 6 DPSLIPEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLCLPKQVQM 63
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+ +VT+R+ Y+
Sbjct: 64 AATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYR 123
Query: 311 ELLENWDDLLPSNYTPAVPPEK 332
+ DL P+++ P +K
Sbjct: 124 LIYPRAPDLFPTDFKFDTPVDK 145
>gi|18977749|ref|NP_579106.1| transcription initiation factor IIB [Pyrococcus furiosus DSM 3638]
gi|397651869|ref|YP_006492450.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
gi|48429160|sp|P61998.1|TF2B_PYRFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|48429161|sp|P61999.1|TF2B_PYRWO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|1206029|gb|AAC43724.1| TFIIB [Pyrococcus furiosus]
gi|18893488|gb|AAL81501.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|393189460|gb|AFN04158.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
Length = 300
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 3/222 (1%)
Query: 101 HSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQL 159
S SG + E + + L + S NL L +D + + L L + + A +L
Sbjct: 79 RSLSGLMRE--KMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPRHVEEEAARL 136
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R+ +R RS+E++ A + A R + PRTL EI+ A V +KEIG+ + +
Sbjct: 137 YREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARN 196
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L L+ ++ +F L L++ + A I + + + ++P + AAA+Y
Sbjct: 197 LNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALY 256
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
+A LE +++TQ E+ +V +TEVT+R YKEL+E +P
Sbjct: 257 IASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKVP 298
>gi|19115141|ref|NP_594229.1| transcription factor TFIIB [Schizosaccharomyces pombe 972h-]
gi|21362985|sp|O13749.1|TF2B_SCHPO RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|2330704|emb|CAB11044.1| transcription factor TFIIB [Schizosaccharomyces pombe]
Length = 340
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 15/203 (7%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L AY +I + + L I D A QL++ L+ +S +++ A + A R+ + P
Sbjct: 119 LTAYKEIGAMCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVP 178
Query: 193 RTLQEISIAANVPQKEIGKYIKILG-------------EALQLSQPINSNSIAVH--MPR 237
RT EI NVP+KEIG+ K L +AL+ + I S+S + M R
Sbjct: 179 RTFMEICTLTNVPKKEIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVR 238
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC L L S Q A + + R+PISI+A+ IY+ L KT EI +V
Sbjct: 239 FCNRLMLPMSVQSAAAELARRAGLQGTLAGRSPISIAASGIYMISALMGYPKTPKEISEV 298
Query: 298 TGLTEVTLRKVYKELLENWDDLL 320
TG+++ T+R YK L +L+
Sbjct: 299 TGVSDSTIRIAYKLLHAERKELI 321
>gi|448739811|ref|ZP_21721815.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445798477|gb|EMA48881.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 236
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L ID +AS LGL I + A ++R S L RSVE+++ AAL A R++
Sbjct: 49 NLRHGLGEIDRMASALGLPTSIRETASVVYRRVISENLLIGRSVESVSAAALYAATRQSS 108
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS----QPINSNSIAVHMPRFCTLLQLNK 246
R+L I A + ++ IG+ + + L L P N H+PR C++L L+
Sbjct: 109 SARSLDGIVGVARIDKQSIGRTYRHINRELGLEIEPPDPTN------HLPRLCSMLDLST 162
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ + + E I + +NP+ ++AAA+Y L +++ TQ + + +++VT+R
Sbjct: 163 EIEQQSRELLETAIAAEEISGKNPVGLAAAAVYAGSLLCNEKITQKAVSEAASVSKVTIR 222
Query: 307 KVYKELLENWD 317
Y+ELL+ ++
Sbjct: 223 NRYQELLDLYE 233
>gi|379335167|gb|AFD03156.1| transcription factor TFIIB cyclin-related protein [uncultured
bacterium W5-77b]
Length = 303
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 144/325 (44%), Gaps = 51/325 (15%)
Query: 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQN----------HHLFHIRAQDTP 51
KCP C A +TG + CG CG V+ E+ ++ H RA P
Sbjct: 10 KCPRCGKAT-LVTDANTGENF--CGKCGFVVTEKVSESGPEWRSFSKEEHEGRSRA-GVP 65
Query: 52 LCLVTSD--LPSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAE 109
L D L +I P D TG + S S + LR+ S S
Sbjct: 66 TSLAMHDMGLATIIGPADRDA--------TGKPLSASMKSTIER---LRTWDSRSQVHEP 114
Query: 110 LERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCL 169
++R F S +D L+ L + D + + A ++R +
Sbjct: 115 VDRNFRQAFSE---------LDRLKDKLAVGDT---------VIEKAAYIYRKALEKGLV 156
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINS- 228
R RS+ AL +AL A R+ + PRTL++I+ A+N+ +K+I + ++L L L P+ +
Sbjct: 157 RGRSISALIASALYAACRDTETPRTLKDIANASNIKRKDIARCYRLLLRELGLKMPVVNP 216
Query: 229 -NSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK 287
N I+ R ++ L++ + A+ I + ++P+ ++AAA+Y+AC +
Sbjct: 217 VNCIS----RIASIAGLSEKTKREASKILKNAEEVKISAGKDPMGLAAAALYVACVTNGE 272
Query: 288 RKTQAEICKVTGLTEVTLRKVYKEL 312
KTQ ++ + G+TEVT+R YK L
Sbjct: 273 NKTQRDVAEAAGVTEVTIRNRYKGL 297
>gi|448417415|ref|ZP_21579351.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445677903|gb|ELZ30399.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 296
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 93/210 (44%), Gaps = 7/210 (3%)
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
Q+A L R ST + V A+ +I +AS L L I DHA LFR
Sbjct: 92 QMARLRRQHNRARISTKRERNQVY-----AFTEIRRLASALSLPERIRDHACSLFRSAQK 146
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQP 225
LR RS+E A A + A R A RT+ E+ A + E L L L P
Sbjct: 147 EDLLRGRSLEGFAAACVYAACRAANVSRTVGEVVAEAKATRAEQTAAYDALNRELGL--P 204
Query: 226 INSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLE 285
+ A ++PRF T L L++ A+ A ++ T RNP ++A +Y A +
Sbjct: 205 VGPVDPAEYVPRFATRLDLSREAERRAREYVAQAVDAGISTGRNPGGVAAGCLYTAARDL 264
Query: 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315
+ TQAE V +T VTLRK Y L E
Sbjct: 265 NADVTQAEAAAVADVTPVTLRKTYVALRER 294
>gi|336254888|ref|YP_004597995.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338877|gb|AEH38116.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 323
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL++ L ID ++S LG+ + + A ++R S +R RS+E +AT L A R+
Sbjct: 137 NLQSALSEIDRMSSALGIPRSVREVASVVYRRALSEDLIRGRSIEGVATGCLYAACRQEG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L +P++ ++PRFC+ L L++
Sbjct: 197 IPRSLEEVAEVSRVERKEIGRTYRYVAQELSLELKPVDPQE---YVPRFCSELDLSEEVT 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
I +V K + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 254 AKTREIIQVTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRY 313
Query: 310 KELLE 314
+E +E
Sbjct: 314 QEQIE 318
>gi|448347239|ref|ZP_21536116.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445631076|gb|ELY84319.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 296
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS L + + + A ++R +R RS+E +AT+ L A R
Sbjct: 109 NLQFALSETDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEG 168
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L +P+N ++PRFC+ L+L++ Q
Sbjct: 169 IPRSLEEVAAVSRVERKEIGRTYRYVAQELNLEMEPVNPKK---YVPRFCSELELSEEVQ 225
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V A I + K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 226 VKANEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRY 285
Query: 310 KELLE 314
+E +E
Sbjct: 286 QEQIE 290
>gi|307595018|ref|YP_003901335.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550219|gb|ADN50284.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa DSM
14429]
Length = 336
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 6/222 (2%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIID----VASILGLDYDICDHAFQL 159
SG+ +++R E+L V R +Q ++ ++S LG+ D A +
Sbjct: 115 SGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNELSRISSQLGIPKACVDEAMGI 174
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+ + +R RSVEA+ A L A R+ PR+L EIS +KE+ + +++
Sbjct: 175 YEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEISQYTRASRKEVARCFRLIARE 234
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L + P++ + ++PR L+L+ A +I E K ++P ++AAA+Y
Sbjct: 235 LGVRLPLSDPKL--YVPRIVEQLKLSGEILKEALNILEQAKRKGLTAGKDPAGLAAAAVY 292
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
+A L+ + +TQ E+ +TEVT+R YKEL + +P
Sbjct: 293 IASLLKGEVRTQKEVAMAAQVTEVTVRNRYKELARELNIKIP 334
>gi|440797904|gb|ELR18978.1| transcription factor tfiib repeat domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 303
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 11/198 (5%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSV----EALATAALVQAIRE 188
L + +I +A IL L I + A +L+ S RN+S+ +++ A + A +E
Sbjct: 107 LSGFDKITHIAEILVLPQKIKNKAKELY---SSFESKRNKSMRCKKDSIVAAIIYMACKE 163
Query: 189 AQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSA 248
PRT +EIS + +KEI KY + L + L S S V+ RFC+ L+L+
Sbjct: 164 EGVPRTFKEISKETEISEKEIRKYYRALNKILPKGTGRTSASDLVN--RFCSKLKLSNEI 221
Query: 249 QVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV 308
LAT I F ++P SI+AA+I LA +L+ +++ + +I ++ T+R V
Sbjct: 222 MNLATDIANKAA--AFLEGKSPSSIAAASILLATKLQGEKRWEKDIAAAASISPTTIRNV 279
Query: 309 YKELLENWDDLLPSNYTP 326
+KELL + + +LP Y P
Sbjct: 280 FKELLPHQESILPEGYRP 297
>gi|336477091|ref|YP_004616232.1| transcription factor TFIIB cyclin [Methanosalsum zhilinae DSM 4017]
gi|335930472|gb|AEH61013.1| Transcription factor TFIIB cyclin-related protein [Methanosalsum
zhilinae DSM 4017]
Length = 337
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL + + A ++R +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI + V +KEIG+ + + L L + PI+ ++PRFC+ LQL
Sbjct: 208 VPRTLDEIGEVSRVSRKEIGRTYRFISRELSLKLMPTSPID------YVPRFCSGLQLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q + I K + R P ++AAAIY+A L R+TQ E+ V G+TEVT+R
Sbjct: 262 EVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGDRRTQREVADVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEELD 332
>gi|358336173|dbj|GAA33522.2| transcription initiation factor TFIIB [Clonorchis sinensis]
Length = 284
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 2/196 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ +I +A L L I DHA LF+ LR RS +A++TA L A R+ PRT
Sbjct: 88 AFREIGQMAEHLNLPKSISDHANLLFKQVYETKNLRGRSNDAVSTACLYMACRQEGVPRT 147
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+E+ + V +KEIGK K + + L+ + + S ++ M RFC L LN + Q +A
Sbjct: 148 FKEVCAVSRVSKKEIGKVFKKILKILETN--VQSVTVEDFMSRFCGNLNLNIAVQRVANV 205
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ +N R+P+S++AAAIY+A +K + EI +V G E T+ Y+ +
Sbjct: 206 VARRALNLNLVAGRSPVSVAAAAIYMAACALGYQKEKREIGEVAGCAEATITCAYRAMHA 265
Query: 315 NWDDLLPSNYTPAVPP 330
+L P + ++ P
Sbjct: 266 RASELFPEDVRLSIRP 281
>gi|448445090|ref|ZP_21590145.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685396|gb|ELZ37750.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 348
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 106/184 (57%), Gaps = 5/184 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++TAAL A R+
Sbjct: 132 NLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEG 191
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRF + L+L++ Q
Sbjct: 192 IPRSLEEISDVSRVDRKEIGRTYRYISQELGLEMRPVDPKK---YVPRFSSELELSEEVQ 248
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E ++ + ++P +AAAIY A L +++KTQ E+ V +TEVT+R
Sbjct: 249 SKANEIIETTADQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRXYA 308
Query: 310 KELL 313
LL
Sbjct: 309 ASLL 312
>gi|325969253|ref|YP_004245445.1| transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
gi|323708456|gb|ADY01943.1| Transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
Length = 336
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 6/222 (2%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIID----VASILGLDYDICDHAFQL 159
SG+ +++R E+L V R +Q ++ ++S LG+ D A +
Sbjct: 115 SGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNELSRISSQLGIPKACVDEAMGV 174
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+ + +R RSVEA+ A L A R+ PR+L EIS +KE+ + +++
Sbjct: 175 YEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEISQYTRASRKEVARCFRLIARE 234
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L + P++ + ++PR L+L+ A +I E K ++P ++AAA+Y
Sbjct: 235 LGVRLPLSDPKL--YVPRIVEQLKLSGEILKEALNILEQAKRKGLTAGKDPAGLAAAAVY 292
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
+A L + +TQ E+ +TEVT+R YKEL + +P
Sbjct: 293 IASLLRGEVRTQKEVAMAAQVTEVTVRNRYKELARELNIKIP 334
>gi|321470096|gb|EFX81073.1| hypothetical protein DAPPUDRAFT_299541 [Daphnia pulex]
Length = 321
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 17/200 (8%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I ++A + L + D A LF++ L+ S +A+A+ L A R+ PRT
Sbjct: 121 AYNEISNMAVNINLPRTVVDRANCLFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRT 180
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTL---------LQLN 245
+EI + +KE+G+ K++ +AL+ S + +PR T L+LN
Sbjct: 181 FKEICALTKIDKKELGRCYKLIPKALETSVDV--------IPRITTSDFIPLQNLNLELN 232
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
Q A HIG + R+P+S++AAAIY+A +K+ T+ I +TG+ +VT+
Sbjct: 233 AMVQREALHIGLKAVELDVVPGRSPLSVAAAAIYMASLASEKKLTKKAIGDITGVADVTI 292
Query: 306 RKVYKELLENWDDLLPSNYT 325
R++++ + +L P +
Sbjct: 293 RQLHELMYPRAAELFPPEFN 312
>gi|448681685|ref|ZP_21691776.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445767555|gb|EMA18658.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 324
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 110/192 (57%), Gaps = 5/192 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L++ +
Sbjct: 196 TPRSLDEIAGVSRVEKDEIARTYRYVVRELSLEIQPADPES---YVPRFASDLDLSEEVE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 253 RRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSEVANISEVTIRNRY 312
Query: 310 KELLENWDDLLP 321
ELLE D++ P
Sbjct: 313 HELLEAEDNIHP 324
>gi|344212211|ref|YP_004796531.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448671788|ref|ZP_21687593.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343783566|gb|AEM57543.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445764924|gb|EMA16067.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 324
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 110/192 (57%), Gaps = 5/192 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L++ +
Sbjct: 196 TPRSLDEIAGVSRVEKDEIARTYRYVVRELSLEIQPADPES---YVPRFASDLDLSEEVE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 253 RRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSEVANISEVTIRNRY 312
Query: 310 KELLENWDDLLP 321
ELLE D++ P
Sbjct: 313 HELLEAEDNIHP 324
>gi|13541920|ref|NP_111608.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363019|sp|Q979P7.1|TF2B2_THEVO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|14325351|dbj|BAB60255.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 313
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 107/183 (58%), Gaps = 5/183 (2%)
Query: 132 NLRAYLQII-DVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ++ D+ + LG+ DI + + ++R +R RS+E++ A++ A R+
Sbjct: 124 NLSLALQLLNDIGAKLGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVN 183
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PRTL EI+ A+ V +K+IGK + L + L L+ +P S ++ +FC L L+K A
Sbjct: 184 IPRTLDEIAKASEVNKKKIGKAYRHLAKELDLNLRPTTPFS---YIAQFCNKLDLDKQAI 240
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V++ I ++ + + P I+AAAIY+A K +TQ EI +++G+TEVT+R Y
Sbjct: 241 VISEDIVRQAMSMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRY 300
Query: 310 KEL 312
KE+
Sbjct: 301 KEI 303
>gi|254166565|ref|ZP_04873419.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254167488|ref|ZP_04874340.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596282|ref|YP_003482978.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
gi|197623751|gb|EDY36314.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624175|gb|EDY36736.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289534069|gb|ADD08416.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
Length = 313
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 108/183 (59%), Gaps = 5/183 (2%)
Query: 132 NLRAYLQ-IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ + +V+S +GL D+ + A ++R +R RS+E++ A++ A R+
Sbjct: 124 NLSVALQELNNVSSKMGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVG 183
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PRTL E++ A+ + +K+IG+ + L + L L+ +P + S ++ +FC+ L L+K+
Sbjct: 184 MPRTLDEVAKASELNKKKIGRAYRHLTKELNLNLKPTTATS---YITQFCSKLHLDKNVV 240
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + + P ++AAAIY+A + ++ +TQ EI +V G+TEVT+R Y
Sbjct: 241 NKAEEIVQQATERGITSGKGPTGVAAAAIYIAANMMNEPRTQKEIAEVAGVTEVTIRNRY 300
Query: 310 KEL 312
KE+
Sbjct: 301 KEI 303
>gi|448439368|ref|ZP_21588009.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691419|gb|ELZ43610.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 326
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 108/188 (57%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + EI + + + L+L QP + S ++PRF + L L+ A+
Sbjct: 197 TPRSLDEISAVSRVEKDEIARTYRYVVRELKLEIQPADPES---YVPRFASDLGLSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + ++ + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R Y
Sbjct: 254 RRARSLLDTAKSQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVANISEVTIRNRY 313
Query: 310 KELLENWD 317
ELLE D
Sbjct: 314 HELLEAED 321
>gi|389851971|ref|YP_006354205.1| transcription initiation factor B [Pyrococcus sp. ST04]
gi|388249277|gb|AFK22130.1| Transcription initiation factor B [Pyrococcus sp. ST04]
Length = 302
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 94/174 (54%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+ S L L + + A +L+R+ +R RS+E++ A + A R + PRTL EI+
Sbjct: 122 ITSQLKLPRYVKEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADI 181
Query: 202 ANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVIN 261
A V +KEIG+ + + L L+ ++ +F L L++ + A I E+
Sbjct: 182 ARVDKKEIGRSFRFIARNLNLTPKKLFVKPTDYVTKFADELGLSEKTRRRAVEILEMAYK 241
Query: 262 KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315
+ ++P + AAA+Y+A LE +++TQ E+ +V +TEVT+R YKEL+E
Sbjct: 242 LGITSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEK 295
>gi|448474119|ref|ZP_21602087.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445818399|gb|EMA68258.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 380
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 94/157 (59%), Gaps = 4/157 (2%)
Query: 159 LFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGE 218
++R + +R RS+E ++TAAL A R+ PR+L E++ + VPQKEIG+ + + +
Sbjct: 222 IYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADVSRVPQKEIGRTYRYISQ 281
Query: 219 ALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAA 277
L L +P++ +PRF + LQL++ Q AT I +V + + ++P +AAA
Sbjct: 282 ELGLELKPVDPKQF---VPRFASALQLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAA 338
Query: 278 IYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
IY A L +++KTQ E+ V +TEVT+R Y+E +E
Sbjct: 339 IYAASLLCNEKKTQREVADVAQVTEVTIRNRYQEQIE 375
>gi|322370876|ref|ZP_08045431.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320549553|gb|EFW91212.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 319
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E +AT+ L A R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVASVIYRRALAEDLIRGRSIEGVATSTLYAACRQEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V QKEIG+ + + + L L +P++ ++PRFC+ L +++ Q
Sbjct: 193 IPRSLEEVAEVSRVDQKEIGRTYRYISQELGLEMKPVDPKQ---YVPRFCSDLGVSEEVQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 250 SKANEIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|330507703|ref|YP_004384131.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
gi|328928511|gb|AEB68313.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
Length = 337
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ + A ++R +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLSRNVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCN 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIAEVSRVSRKEIGRTYRFVSRELALKLMPTSPID------YIPRFCSGLNLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q I K + R P ++AAAIY+A L R+TQ E+ V G+TEVT+R
Sbjct: 262 EVQAKGIEILRQAAEKELTSGRGPTGVAAAAIYIASILCGDRRTQREVADVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEELD 332
>gi|393216052|gb|EJD01543.1| cyclin-like protein [Fomitiporia mediterranea MF3/22]
Length = 354
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 20/228 (8%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDC 163
SG EL+R +S + +T S M L+A+ I L I D A QL++
Sbjct: 110 SGVARELQRA----ASRSQNTRSERNM--LQAFRDISSWCDQFSLPKTISDIAKQLYKRA 163
Query: 164 CSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS 223
LR +S++A+ A + A R+A PRT +E+ +VP+K +G+ K L +A L+
Sbjct: 164 DEEKLLRGKSLDAVIAACIFIACRQAHVPRTFREMCTLTHVPKKTLGQCYKTLEKAFNLA 223
Query: 224 QPINSNSIAVHMP--------------RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRN 269
++N+ P R+C L L Q A+ I + F R+
Sbjct: 224 AAGSNNTTQNSRPDPAATTTNPQDLLARYCNHLGLPHLVQSTASEIISIGKEHAFTDGRS 283
Query: 270 PISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
PISI++ +IY QL T ++C+ G++E T++ V+K EN D
Sbjct: 284 PISIASGSIYFTTQLLGVPMTMKDLCENAGVSESTVKLVFKIYCENRD 331
>gi|386002924|ref|YP_005921223.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
gi|357210980|gb|AET65600.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
Length = 337
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 138/307 (44%), Gaps = 29/307 (9%)
Query: 22 ITECGSCGRVIAERQCQNHHLFHIRAQDTPLCL---VTSDLPSIPQPQQNDGVDEDPFQP 78
I EC CG +H L H + +C + D I Q + D D
Sbjct: 38 IVECPECG---------SHALVHDYERAELVCSDCGLVIDENFIDQGPEWRAFDHDQRMK 88
Query: 79 TGFITAFSAWSL----VPSPLFLRSSHSFSGQLAELERT--FELLSSSTTSTSSSVMMDN 132
+ A +++ + + + R+ S+ ++ R + L S+ N
Sbjct: 89 RSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERN 148
Query: 133 LRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQE 191
L L +D +AS LGL ++ + A ++R +R RS+E +A AAL A R+
Sbjct: 149 LAFALSELDRMASALGLSRNVRETAAVIYRKAVDKNLIRGRSIEGVAAAALYAACRQCNV 208
Query: 192 PRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKS 247
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 209 PRTLDEIAEVSRVSRKEIGRTYRFVSRELALKLMPTSPID------YIPRFCSGLSLKGE 262
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
Q I K + R P ++AAAIY+A L R+TQ E+ V G+TEVT+R
Sbjct: 263 VQAKGIEILRQAAEKELTSGRGPTGVAAAAIYIASILCGDRRTQREVADVAGVTEVTIRN 322
Query: 308 VYKELLE 314
YKEL E
Sbjct: 323 RYKELAE 329
>gi|15789908|ref|NP_279732.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235629|ref|YP_001688829.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195246|sp|Q9HRE6.1|TF2B2_HALSA RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10580312|gb|AAG19212.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726695|emb|CAP13481.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 325
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 101/184 (54%), Gaps = 3/184 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I +AS LGL ++ + A ++R S L RS+E +ATAAL + R+
Sbjct: 138 NLKQALGEIERMASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLS 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR++ E++ + + + E + + + +LS + A ++PRF + L L +
Sbjct: 198 TPRSIDEVANVSRIDEMEFKRTYRYI--VRELSLEVAPADPAQYVPRFASDLDLPDEVER 255
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
+ + + ++P+ ++AAAIY + L + + TQ+E+ +VT ++EVT+R Y+
Sbjct: 256 RSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVTDVSEVTIRNRYQ 315
Query: 311 ELLE 314
ELLE
Sbjct: 316 ELLE 319
>gi|116753584|ref|YP_842702.1| transcription initiation factor IIB [Methanosaeta thermophila PT]
gi|121694369|sp|A0B5T8.1|TF2B_METTP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116665035|gb|ABK14062.1| Transcription initiation factor IIB (TFIIB) [Methanosaeta
thermophila PT]
Length = 337
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 96/177 (54%), Gaps = 10/177 (5%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+AS LGL ++ + A ++R +R RS+E +A AAL A R+ PRTL EI+
Sbjct: 159 MASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAEV 218
Query: 202 ANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
+ V +KEIG+ + + L L + PI+ ++PRFC+ L L Q I
Sbjct: 219 SRVSRKEIGRTYRFVSRELSLKLMPTSPID------YIPRFCSGLNLKGDVQAKGIEILR 272
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
K + R P ++AAAIY+A L + R+TQ E+ V G+TEVT+R YKEL E
Sbjct: 273 QAAEKELTSGRGPTGVAAAAIYIASILCNDRRTQREVADVAGVTEVTIRNRYKELAE 329
>gi|91772962|ref|YP_565654.1| transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
gi|91711977|gb|ABE51904.1| Transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
Length = 337
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 140/314 (44%), Gaps = 23/314 (7%)
Query: 15 TTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDED 74
TT + EC CG E Q++ + D C + D + + + D D
Sbjct: 31 TTEVENKVVECPECGSRSLE---QDYERAELVCAD---CGLVVDAEFVDEGPEWRAFDHD 84
Query: 75 PFQPTGFITAFSAWSL----VPSPLFLRSSHSFSGQLAELERT--FELLSSSTTSTSSSV 128
+ A +++ + + + R+ S+ ++ R + L S+
Sbjct: 85 QRMKRSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNA 144
Query: 129 MMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIR 187
NL L +D +AS LGL + + A ++R +R RS+E +A AAL A R
Sbjct: 145 TERNLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACR 204
Query: 188 EAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQ 243
+ PRTL EI + V +KEIG+ + + L L + PI+ ++PRFC+ L
Sbjct: 205 QCSVPRTLDEIGEVSRVSRKEIGRTYRFISRELSLKLMPTSPID------YVPRFCSGLN 258
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L Q I K + R P ++AAAIY+A L +R+TQ E+ V G+TEV
Sbjct: 259 LKGEVQSRGVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEV 318
Query: 304 TLRKVYKELLENWD 317
T+R YKEL E D
Sbjct: 319 TIRNRYKELAEELD 332
>gi|298674300|ref|YP_003726050.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298287288|gb|ADI73254.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 141/307 (45%), Gaps = 23/307 (7%)
Query: 22 ITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGF 81
+T+C CG + E Q++ + D C + D + + + D D
Sbjct: 42 VTKCPECGSINLE---QDYERAELVCSD---CGLVVDAELVDEGPEWRAFDHDQRMKRSR 95
Query: 82 ITAFSAWSL----VPSPLFLRSSHSFSGQLAELERT--FELLSSSTTSTSSSVMMDNLRA 135
+ A +++ + + + R+ S+ ++ R + L S+ NL
Sbjct: 96 VGAPMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAF 155
Query: 136 YLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
L +D +AS LGL + + A ++R +R RS+E +A AAL A R+ PRT
Sbjct: 156 ALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 215
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQV 250
L EI + V +KEIG+ + + L L + PI+ ++PRFC+ L+L Q
Sbjct: 216 LDEIGEVSRVSRKEIGRTYRFISRELSLKLMPTSPID------YVPRFCSGLKLKGEVQS 269
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
I K + R P ++AAAIY+A L +R+TQ E+ V G+TEVT+R YK
Sbjct: 270 KGVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 329
Query: 311 ELLENWD 317
EL E D
Sbjct: 330 ELSEELD 336
>gi|16120252|ref|NP_395840.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237618|ref|YP_001690821.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195241|sp|Q9HHK5.1|TF2B3_HALSA RecName: Full=Transcription initiation factor IIB 3; Short=TFIIB 3
gi|10584386|gb|AAG20975.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728395|emb|CAP15204.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 317
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +ATA L A R+
Sbjct: 130 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PRTL+E++ A + QKEIG+ + + + L L QP + ++PRF + L+L++
Sbjct: 190 IPRTLEEVTEVARIDQKEIGRTYRYVAQELSLEIQPTDPKE---YLPRFASDLELSEEVI 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 247 AKAREIIDTSAEQGLLSGKSPSGFAAAAIYAASLLCNEKKTQREVANVANVTEVTIRNRY 306
Query: 310 KELLE 314
+E +E
Sbjct: 307 QEQIE 311
>gi|427777857|gb|JAA54380.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 292
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S++ +M+ A+ +I ++A + L I D A LF+ L+ RS +A+A+A
Sbjct: 104 TMSSADRALMN---AFREISNMADRINLTKTIVDRANLLFKQVHDGKTLKGRSNDAIASA 160
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + V +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 161 CLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 218
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L S Q ATHI + R+PIS++A G+
Sbjct: 219 NLGLPSSVQKAATHIARKAVELDIVPGRSPISVAA----------------------XGV 256
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ YK + +L P ++ P E+
Sbjct: 257 ADVTIRQSYKLMYPRAAELFPKDFKFFTPIEQ 288
>gi|322370540|ref|ZP_08045098.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549957|gb|EFW91613.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 328
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 105/188 (55%), Gaps = 11/188 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+A+ A R+
Sbjct: 138 NLKQALGEIDRMASALGLPKNVRETASVIYRRALDDDLLPGRSIEGVATSAVYAAARQTG 197
Query: 191 EPRTLQEISIAANVPQKEIGK---YI-KILGEALQLSQPINSNSIAVHMPRFCTLLQLNK 246
PR+L E++ + + + E + YI + LG +Q + P++ ++ RF + L ++
Sbjct: 198 VPRSLDEVAAVSRIDEMEFKRTYRYIVRELGLEIQPADPLS------YVSRFASDLDISD 251
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
++ A + + + + ++P+ ++AAA+Y L +++ TQ+E+ V ++EVT+R
Sbjct: 252 ESERRAKDLLKTAKEQGVHSGKSPVGLAAAAVYAGSLLSNEKVTQSEVSDVANVSEVTIR 311
Query: 307 KVYKELLE 314
Y+ELLE
Sbjct: 312 NRYQELLE 319
>gi|55378144|ref|YP_135994.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448636768|ref|ZP_21675216.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448648512|ref|ZP_21679643.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448685471|ref|ZP_21693463.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55230869|gb|AAV46288.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445765074|gb|EMA16213.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445775613|gb|EMA26623.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782082|gb|EMA32933.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 324
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 110/192 (57%), Gaps = 5/192 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L++ +
Sbjct: 196 TPRSLDEIAGVSRVEKDEIARTYRYVVRELSLEIQPADPES---YVPRFASDLDLSEEVE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+++ +V ++EVT+R Y
Sbjct: 253 RRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSQVSEVANISEVTIRNRY 312
Query: 310 KELLENWDDLLP 321
ELLE D++ P
Sbjct: 313 HELLEAEDNIHP 324
>gi|225436547|ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
gi|297734946|emb|CBI17180.3| unnamed protein product [Vitis vinifera]
Length = 314
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 105/201 (52%), Gaps = 15/201 (7%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++A+ I + LGL I D A ++++ LR R+ +A+ A + A R+ +P
Sbjct: 108 IQAFKTIATMCDRLGLVATIKDLANEIYKKVEDQKPLRGRNQDAILAACIYIACRQEDKP 167
Query: 193 RTLQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLL----Q 243
RT++EI S+A +KEIG+ + + + L++ + +H + RFC+ L Q
Sbjct: 168 RTVKEICSVANGATKKEIGRAKEYIVKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMTNQ 227
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
K+AQ E+ I RR+PIS++AA IY+ QL D +K +I TG+ E
Sbjct: 228 AVKAAQEAVQKSEELDI------RRSPISVAAAVIYMITQLSDDKKLLKDISLATGVAEG 281
Query: 304 TLRKVYKELLENWDDLLPSNY 324
T+R YK+L ++PS+Y
Sbjct: 282 TIRNSYKDLYPYASRIIPSSY 302
>gi|448629133|ref|ZP_21672532.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445757699|gb|EMA09040.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 324
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 110/192 (57%), Gaps = 5/192 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L++ +
Sbjct: 196 TPRSLDEIAGVSRVEKDEIARTYRYVVRELSLEIQPADPES---YVPRFASDLDLSEEVE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+++ +V ++EVT+R Y
Sbjct: 253 RRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSQVSEVANISEVTIRNRY 312
Query: 310 KELLENWDDLLP 321
ELLE D++ P
Sbjct: 313 HELLEAEDNIHP 324
>gi|257052965|ref|YP_003130798.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691728|gb|ACV12065.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 334
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E + V +++ + + L L+L I A ++PRF + L L+ +
Sbjct: 197 TPRSLDEFEPISRVRRQKYARAYRYLARQLELG--IAPADPAEYLPRFTSDLDLDDDLER 254
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + +NP ++A AIY A L R TQ E+ + ++EVT+R Y
Sbjct: 255 QARDLLSELKKTGEHSGKNPTGLAAGAIYAAGLLTGDRITQGEVAETADVSEVTIRDRYS 314
Query: 311 ELLE 314
ELLE
Sbjct: 315 ELLE 318
>gi|257388456|ref|YP_003178229.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170763|gb|ACV48522.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 324
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPKNVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQAN 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + E+ + + + L L P S ++PRFC+ L L+ +
Sbjct: 197 NPRSLDEMTHVSRVERMELTRTYRYIIRELGLEVAPAKPES---YVPRFCSELSLSDETE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + + ++P+ I+AAA+Y A L +++ TQ+E+ V ++EVT+R Y
Sbjct: 254 RRARELIEAARDGGILSGKSPVGIAAAAVYAAALLTNEKVTQSEVSGVADISEVTIRNRY 313
Query: 310 KELLE 314
KELL+
Sbjct: 314 KELLD 318
>gi|407462988|ref|YP_006774305.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046610|gb|AFS81363.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 290
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 110/207 (53%), Gaps = 8/207 (3%)
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLR 170
RT++ S T+S NLR L Q+ + L L + + A ++R ++
Sbjct: 85 RTWDSRSKVTSSADK-----NLRQALGQLSVLKDKLSLSDSVNEKASYIYRKALENGLVK 139
Query: 171 NRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNS 230
RS+ AL A++ A R+ + PRTL++++ A N+ +K+I + +IL L+L P+ N
Sbjct: 140 GRSISALIAASIYAACRDTETPRTLKDVADAGNIKKKDISRCYRILHYELELKMPV-VNP 198
Query: 231 IAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKT 290
I + R + L++ + ++ A + +V ++P+ I+AAA+YLAC ++ T
Sbjct: 199 IQC-IARISSKLRITEKSKRYAIKVLQVAQEHEESAGKDPMGIAAAALYLACVKNNEYVT 257
Query: 291 QAEICKVTGLTEVTLRKVYKELLENWD 317
Q ++ + + +TEVT+R YK L + D
Sbjct: 258 QRDVAEASNVTEVTIRNRYKGLRLDQD 284
>gi|336254131|ref|YP_004597238.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338120|gb|AEH37359.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L QP + S ++PRF + L L+ +
Sbjct: 196 TPRSLDEISAVSRVDKMELTRTYRYIIRELGLEVQPADPES---YVPRFVSDLDLSDETE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + ++P+ ++AA +Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 253 RMARELLESARKAGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 312
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 313 KELLEASDTAAPA 325
>gi|448423775|ref|ZP_21582108.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445683032|gb|ELZ35437.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 396
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 108/188 (57%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 207 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAG 266
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L QP + S ++PRF + L L+ A+
Sbjct: 267 TPRSLDEIAGVSRVEKDEIARTYRYVVRELKLEIQPADPES---YVPRFASDLGLSDEAE 323
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 324 RRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRY 383
Query: 310 KELLENWD 317
ELLE D
Sbjct: 384 HELLEAED 391
>gi|410670096|ref|YP_006922467.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
gi|409169224|gb|AFV23099.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
Length = 337
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 100/191 (52%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL + + A ++R +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIGEVSRVSRKEIGRTYRFISRELSLKLMPTSPID------YVPRFCSGLNLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q I K + R P ++AAAIY+A L +R+TQ E+ V G+TEVT+R
Sbjct: 262 EVQSRGVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEELD 332
>gi|115396260|ref|XP_001213769.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
gi|114193338|gb|EAU35038.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
Length = 351
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 129/323 (39%), Gaps = 50/323 (15%)
Query: 19 GRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQP 78
G T CGSCG V+A+R+ H + + D Q ND DP +
Sbjct: 40 GSHETVCGSCGLVLADREIDMHSEWRTFSNDD---------------QNND----DPSRV 80
Query: 79 TGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ 138
+ L L + + SG++ +L R SS + + L AY +
Sbjct: 81 GDAVNPL----LNGDQLETQIASGGSGRVRDLYRAQNKQSSEKANKAL------LAAYKE 130
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I + G+ ++ D A LF+ A + +S + + + A R+ PRT QEI
Sbjct: 131 IGALCDGWGIQKNVADTAKYLFKTVDDAKAFKGKSQDVIIAGCIFIACRQRNVPRTFQEI 190
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSI----AVHMP-----------------R 237
V +KEIG+ K L + Q N++ V P R
Sbjct: 191 FAVTKVSRKEIGRIYKALEKFFQAQNKERQNAVLSSGGVPDPNDTYTATTTTRPSDLCNR 250
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC LL L +++ + + V K R+P+SI AA IY+A L K EI V
Sbjct: 251 FCNLLDLPYQVTSVSSALADHVTTKGDLAGRSPLSIVAACIYMASYLMGHGKPAKEISTV 310
Query: 298 TGLTEVTLRKVYKELLENWDDLL 320
+++ T+R YK+L + L+
Sbjct: 311 AHVSDSTIRGAYKQLYAKRERLV 333
>gi|397774847|ref|YP_006542393.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397683940|gb|AFO58317.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 329
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 105/188 (55%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL D+ + A ++R A L RS+E +ATA+L A R+A
Sbjct: 141 NLKQALGEIDRMASALGLPDDVRETASVIYRRALEADLLPGRSIEGVATASLYAAARQAG 200
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L QP + S ++PRF + L L +
Sbjct: 201 TPRSLDEISAVSRVDKAEVARTYRYVVRELGLEVQPADPES---YVPRFASDLDLADETE 257
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A + K + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R Y
Sbjct: 258 LRARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVASISEVTIRNRY 317
Query: 310 KELLENWD 317
ELLE D
Sbjct: 318 HELLEAED 325
>gi|375083122|ref|ZP_09730154.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
gi|374742208|gb|EHR78614.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
Length = 299
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D + + L L + + A +L+R+ +
Sbjct: 87 EKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLPKHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R +S+E++ A + A R + PRTL EI+ A V +KEIG+ + + L L+
Sbjct: 147 RGKSIESVIAACVYAACRLLKIPRTLDEIADIAKVDKKEIGRSFRFIARNLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A + E + ++P + AAA+Y+A LE +++
Sbjct: 207 KPTDYVNKFADELGLSERTRRRAIELLEKAYGMGLTSGKSPAGLVAAALYIAGLLEGEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKE++E LP
Sbjct: 267 TQREVAEVARVTEVTVRNRYKEMVEKLGLKLP 298
>gi|383619979|ref|ZP_09946385.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448696408|ref|ZP_21697882.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445783614|gb|EMA34442.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 321
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + + ++R + +R RS+E +AT+ L R+
Sbjct: 135 NLQFALSEIDRMASALGVPRSVREVSSVIYRRALTEDLIRGRSIEGVATSCLYAGCRQEG 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L +P++ ++PRFC+ L+ ++ +
Sbjct: 195 IPRSLEEVAEVSRVEKKEIGRTYRYVAKELGLEMKPVDPKE---YVPRFCSDLEASEEVE 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ AT I + + + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 252 MKATEIIDTTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRY 311
Query: 310 KELLE 314
+E +E
Sbjct: 312 QEQIE 316
>gi|386875751|ref|ZP_10117910.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806507|gb|EIJ65967.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 304
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 138/293 (47%), Gaps = 30/293 (10%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVD-EDPFQPTGFIT 83
CG CG VI E+ ++ P Q++ G D P+ +
Sbjct: 29 CGKCGYVITEKSQESG-------------------PEWRSFQKDGGADPARTGAPSSLMI 69
Query: 84 AFSAWSLVPSPLFLRSSHSFSGQ--LAELERTFELLSSSTTSTSSSVMMD-NLRAYLQII 140
S V +PL + SG+ ++ T E L + + + +D NLR L +
Sbjct: 70 HDMGLSTVINPL----NKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSDL 125
Query: 141 D-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEIS 199
+ + + + ++ + A ++R +R RS+ A+ A+L A R+ + PRTL+++S
Sbjct: 126 NKLKDKVSVPANVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDVS 185
Query: 200 IAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVV 259
AANV +K+I + ++L L+L P+ +SI + R + L++++ + A + +
Sbjct: 186 DAANVKRKDIARCYRLLHHELELKMPV-VDSIQC-IARISSKLEISEKTKRYAVKVLKDA 243
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ ++P+ ++A A+YL+C TQ ++ + G+TEVT+R YK L
Sbjct: 244 QERKESAGKDPMGLAATALYLSCVKNGVSITQRDLAEAAGVTEVTIRNRYKGL 296
>gi|329766221|ref|ZP_08257779.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393795806|ref|ZP_10379170.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137280|gb|EGG41558.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 304
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 143/332 (43%), Gaps = 57/332 (17%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQ----------CQNHHLFHIRAQDTPL 52
CP C AQG+ T + + C CG V++E+ Q+ H RA P
Sbjct: 12 CPRC--AQGKLVTDNESGEMF-CSKCGFVMSEKLQESGPEWRSFTQDEHGDRARA-GAPT 67
Query: 53 CLVTSD--LPSIPQPQQNDGVDEDPFQPT--GFITAFSAW---SLVPSPLFLRSSHSFSG 105
L D L +I P D + P + I W S V P+ +F
Sbjct: 68 SLTMHDMGLATIINPINKDATGK-PLSASMKSTIERLRTWDNRSQVHEPV----DRNFRQ 122
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
+EL R L+ L I D + + A ++R
Sbjct: 123 AFSELNR--------------------LKDKLAISDA---------VIEKAAYIYRKALD 153
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQP 225
+R RS+ AL +AL A R+ + PR L+++ AAN+ +K+I + ++L + L L P
Sbjct: 154 KGLVRGRSISALMASALYAACRDTETPRNLKDVEQAANIKRKDIARCYRLLIKELDLKMP 213
Query: 226 INSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLE 285
+ ++SI + R + + + + + A ++ + ++P+ ++AAA+YL+C
Sbjct: 214 V-TDSIQC-VARIASRIGIAEKTKRYAVNVLKQAQENEVSAGKDPMGLAAAALYLSCVKN 271
Query: 286 DKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ KTQ +I + +TEVT+R YK L ++ D
Sbjct: 272 GEDKTQRDIAEAANVTEVTIRNRYKGLRDSLD 303
>gi|448476740|ref|ZP_21603675.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815191|gb|EMA65123.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 307
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 93/160 (58%), Gaps = 4/160 (2%)
Query: 156 AFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKI 215
A ++R + +R RS+E ++TAAL A R+ PR+L+EIS + V +KEIG+ +
Sbjct: 145 ALVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSRVERKEIGRTYRY 204
Query: 216 LGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISIS 274
+ + L L +P++ ++PRF + L L++ Q A I E + + ++P +
Sbjct: 205 ISQELGLEMRPVDPKK---YVPRFSSELDLSEEVQSKANEIIETTAEQGLLSGKSPTGFA 261
Query: 275 AAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
AAAIY A L +++KTQ E+ V +TEVT+R Y+E +E
Sbjct: 262 AAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQEQIE 301
>gi|448448980|ref|ZP_21591478.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814072|gb|EMA64044.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 325
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 108/188 (57%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L QP + S ++PRF + L L+ A+
Sbjct: 196 TPRSLDEIAGVSRVEKDEIARTYRYVVRELKLEIQPADPES---YVPRFASDLGLSDEAE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 253 RRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRY 312
Query: 310 KELLENWD 317
ELLE D
Sbjct: 313 HELLEAED 320
>gi|2392147|pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 200
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 12/182 (6%)
Query: 146 LGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVP 205
L L + + A +L+R+ +R RS+E++ A + A R + PRTL EI+ A V
Sbjct: 23 LKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 82
Query: 206 QKEIGKYIKILGEALQLS------QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVV 259
+KEIG+ + + L L+ +P + ++ +F L L++ + A I +
Sbjct: 83 KKEIGRSYRFIARNLNLTPKKLFVKPTD------YVNKFADELGLSEKVRRRAIEILDEA 136
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319
+ + ++P + AAA+Y+A LE +++TQ E+ +V +TEVT+R YKEL+E
Sbjct: 137 YKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIK 196
Query: 320 LP 321
+P
Sbjct: 197 VP 198
>gi|435851445|ref|YP_007313031.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
gi|433662075|gb|AGB49501.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
Length = 337
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 100/191 (52%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL + + A ++R +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIGEVSRVSRKEIGRTYRFISRELSLKLMPTSPID------YVPRFCSGLNLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q I K + R P ++AAAIY+A L +R+TQ E+ V G+TEVT+R
Sbjct: 262 EVQSKGVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEELD 332
>gi|6573567|pdb|1D3U|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 201
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 12/182 (6%)
Query: 146 LGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVP 205
L L + + A +L+R+ +R RS+E++ A + A R + PRTL EI+ A V
Sbjct: 24 LKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 83
Query: 206 QKEIGKYIKILGEALQLS------QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVV 259
+KEIG+ + + L L+ +P + ++ +F L L++ + A I +
Sbjct: 84 KKEIGRSYRFIARNLNLTPKKLFVKPTD------YVNKFADELGLSEKVRRRAIEILDEA 137
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319
+ + ++P + AAA+Y+A LE +++TQ E+ +V +TEVT+R YKEL+E
Sbjct: 138 YKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIK 197
Query: 320 LP 321
+P
Sbjct: 198 VP 199
>gi|448502246|ref|ZP_21612519.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445694402|gb|ELZ46531.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 325
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 108/188 (57%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L QP + S ++PRF + L L+ A+
Sbjct: 196 TPRSLDEIAGVSRVEKDEIARTYRYVVRELKLEIQPADPES---YVPRFASDLGLSDEAE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 253 RRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRY 312
Query: 310 KELLENWD 317
ELLE D
Sbjct: 313 HELLEAED 320
>gi|294495329|ref|YP_003541822.1| transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
gi|292666328|gb|ADE36177.1| Transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
Length = 337
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 100/191 (52%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL + + A ++R +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIGEVSRVSRKEIGRTYRFISRELSLKLMPTSPID------YVPRFCSGLTLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q I K + R P ++AAAIY+A L +R+TQ E+ V G+TEVT+R
Sbjct: 262 EVQSRGVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEELD 332
>gi|448727279|ref|ZP_21709645.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
gi|445791493|gb|EMA42133.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
Length = 326
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 111/193 (57%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R L RS+E ++T+AL A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + E+ + + + L L QP + A ++PRF + L+L++ A+
Sbjct: 197 TPRSLDEIATVSRVGKMELTRTYRYVVRELGLEIQPADP---ASYVPRFASDLELSEEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E ++ + ++P+ ++AAA+Y A L +++ TQ + +V ++EVT+R Y
Sbjct: 254 RRARQLLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVADISEVTIRNRY 313
Query: 310 KELLENWDDLLPS 322
KELLE D++ +
Sbjct: 314 KELLEAEGDVMAA 326
>gi|345006564|ref|YP_004809417.1| transcription factor TFIIB cyclin-like protein [halophilic archaeon
DL31]
gi|344322190|gb|AEN07044.1| Transcription factor TFIIB cyclin-related protein [halophilic
archaeon DL31]
Length = 284
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 2/191 (1%)
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
T S + + + +I + L L I D A LFR + LR RS+E A+A
Sbjct: 94 TQIRSKRERNQVYGFTEIRRLMGALSLPDRIRDQACSLFRSAQNEDLLRGRSIEGFASAG 153
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTL 241
+ A R A RT EI + E L L L P+ + A +PRF +
Sbjct: 154 VYAACRVAGISRTSSEILEVSKASAGEHRAAYDALNRDLGL--PVAAAEPAEFLPRFASE 211
Query: 242 LQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 301
L+L K+ Q A + E + RNP ++A A+YLA + ED+ TQAE +V +T
Sbjct: 212 LELEKATQRRARELTERAVEAGHANGRNPSGVAAGALYLAARCEDEAITQAEAAEVADVT 271
Query: 302 EVTLRKVYKEL 312
VT+R Y+ L
Sbjct: 272 AVTVRTTYQAL 282
>gi|407464963|ref|YP_006775845.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048151|gb|AFS82903.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 148/323 (45%), Gaps = 42/323 (13%)
Query: 1 MKCPYCSAAQGRCATTS------TGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCL 54
M P C+ RC S TG + CG CG VI E+ ++
Sbjct: 7 MDNPTCA----RCGKNSLLTDEVTGENF--CGKCGYVITEKSQESG-------------- 46
Query: 55 VTSDLPSIPQPQQNDGVD-EDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQ--LAELE 111
P Q++ G D P+ + S V +PL + SG+ ++
Sbjct: 47 -----PEWRSFQKDGGADPARTGAPSSLMIHDMGLSTVINPL----NKDASGKPLSTSMK 97
Query: 112 RTFELLSSSTTSTSSSVMMD-NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
T E L + + + +D NLR L ++ + + + ++ + A ++R +
Sbjct: 98 STIERLRTWDSRSQVHAPVDRNLRQALSDLNKLKDKVSIPANVLEKAAYIYRKALEKKLV 157
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+ A+ A+L A R+ + PRTL++++ AANV +K+I + ++L L+L P+ +
Sbjct: 158 RGRSISAMIAASLYAACRDTETPRTLKDVADAANVKRKDIARCYRLLHHELELKMPV-VD 216
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
SI + R + L++++ + A + + + ++P+ ++A A+YL+C
Sbjct: 217 SIQC-IARISSKLEISEKTKRYAVKVLKEAQERKESAGKDPMGLAATALYLSCVKNGVSI 275
Query: 290 TQAEICKVTGLTEVTLRKVYKEL 312
TQ ++ + G+TEVT+R YK L
Sbjct: 276 TQRDLAEAAGVTEVTIRNRYKGL 298
>gi|392587013|gb|EIW76348.1| transcription initiation factor IIB [Coniophora puteana RWD-64-598
SS2]
Length = 353
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 10/202 (4%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ I L I D A QL++ LR + +EA+ A + A R+A P
Sbjct: 134 LTAFRDIGGWCDQFSLPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVP 193
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----------MPRFCTLL 242
RT +EI NV +K +G+ K L +A L+ S ++H + R+C L
Sbjct: 194 RTFREICNLTNVSKKTLGQCYKALEQAFNLTPGSGSGGASIHPSPSTGPENLLVRYCNHL 253
Query: 243 QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
L + Q + I R+P+SI+ AIY C L K K+ +I V G++E
Sbjct: 254 DLPANVQSICGDIIVAARKHGIADGRSPVSIAGGAIYFTCHLLGKAKSARDISSVAGVSE 313
Query: 303 VTLRKVYKELLENWDDLLPSNY 324
T++ VY+ + + L+ ++
Sbjct: 314 GTIKLVYRLYYTDREKLVKQDW 335
>gi|448479384|ref|ZP_21604236.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445822662|gb|EMA72426.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 385
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 116/213 (54%), Gaps = 5/213 (2%)
Query: 107 LAELERTFELLS-SSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
L E++R L ++SV+ A +I +AS LGL ++ + A ++R
Sbjct: 171 LGEIDRMASALGLPDNVRETASVIYRRALALGEIDRMASALGLPDNVRETASVIYRRALD 230
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS-Q 224
L RS+E ++TA+L A R+A PR+L EI+ + V + EI + + + L+L Q
Sbjct: 231 EDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLEIQ 290
Query: 225 PINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQL 284
P + S ++PRF + L L+ A+ A + + + + ++P+ ++AAA+Y A L
Sbjct: 291 PADPES---YVPRFASDLGLSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLL 347
Query: 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+++ TQ+E+ +V ++EVT+R Y ELLE D
Sbjct: 348 VNEKVTQSEVSEVANISEVTIRNRYHELLEAED 380
>gi|288560856|ref|YP_003424342.1| transcription initiation factor TFIIB Tfb2 [Methanobrevibacter
ruminantium M1]
gi|288543566|gb|ADC47450.1| transcription initiation factor TFIIB Tfb2 [Methanobrevibacter
ruminantium M1]
Length = 343
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 151 DICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIG 210
D+ A ++R +R RS+ L +A+L A R + PRT EI+ + +K I
Sbjct: 177 DVNKEAASIYRRALEKDLVRGRSISLLISASLYAACRVCRVPRTFDEIAEVSTGSKKSIA 236
Query: 211 KYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNP 270
K + L L L I S ++PRF ++L+L+ V + I + K + P
Sbjct: 237 KNYRFLNRELAL--KIRPASPVDYIPRFASMLELSSPVVVKSIEIINELNEKGLIAGKTP 294
Query: 271 ISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
++AAA+Y + ++ +R+TQ EI V G+TEVT+R YKE+
Sbjct: 295 AGVAAAALYYSSRVLGERRTQKEIASVVGVTEVTIRTRYKEM 336
>gi|448304716|ref|ZP_21494652.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590097|gb|ELY44318.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 321
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A L+R S +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASALGVPRSVREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E+S + V + EIG+ + + + L L +P++ ++PRFC+ L L++ Q
Sbjct: 194 IPRSLDEVSAVSRVDRMEIGRTYRYISQELSLEMEPVDPKK---YVPRFCSELDLSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY + L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 AKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRY 310
Query: 310 KELLE 314
+E ++
Sbjct: 311 QEQID 315
>gi|257051172|ref|YP_003129005.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256689935|gb|ACV10272.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 108/190 (56%), Gaps = 5/190 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 134 NLKQALGEIDRMASALGLPENVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI + V + E+ + + + L+L +P + S ++PRF + L+L + A+
Sbjct: 194 NPRSLDEIDNVSRVEKDEVARTYRYVVRELKLEVKPADPTS---YVPRFASDLELTEEAE 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + + ++P+ ++AAAIY A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 251 RHARDLLENAKQEGVHSGKSPVGLAAAAIYAASLLANEKVTQNEVSEVANISEVTIRNRY 310
Query: 310 KELLENWDDL 319
ELLE D+
Sbjct: 311 HELLEAKQDI 320
>gi|448739366|ref|ZP_21721381.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
gi|445799961|gb|EMA50330.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
Length = 326
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 111/193 (57%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R L RS+E ++T+AL A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + E+ + + + L L QP + A ++PRF + L+L++ A+
Sbjct: 197 TPRSLDEIATVSRVGKMELTRTYRYVVRELGLEIQPADP---ASYVPRFASDLELSEEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E ++ + ++P+ ++AAA+Y A L +++ TQ + +V ++EVT+R Y
Sbjct: 254 RRARQLLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVADISEVTIRNRY 313
Query: 310 KELLENWDDLLPS 322
KELLE D++ +
Sbjct: 314 KELLEAEGDVMAA 326
>gi|395329967|gb|EJF62352.1| cyclin-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 351
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 126/296 (42%), Gaps = 38/296 (12%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CG+CG V+ +R + A D D PS G DP
Sbjct: 52 CGTCGLVLGDRIVDTRSEWRTFANDE------GDDPS------RVGAASDP--------- 90
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
L+ L ++ SF + L R EL +++ + SS + L+A+ I +
Sbjct: 91 -----LMEGIEQLDTTISFKDGGSGLAR--ELQRAASRANSSRSERNLLQAFRDISNWCD 143
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
L I D A QL++ LR + +EA+ A + A R+A PRT +EI +V
Sbjct: 144 QFSLPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHV 203
Query: 205 PQKEIGKYIKILGEALQLSQPINSNSIAVH----------MPRFCTLLQLNKSAQVLATH 254
+K +G+ K L +A L+ + + A+ + R+C L L + Q +
Sbjct: 204 SKKVLGQCYKALEQAFNLTPGASQDRHAITPSGTTGAEDLLVRYCNHLALPPNFQPICAD 263
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
I R+P+SI+ AIY C L DK KT EI V G++E T++ VYK
Sbjct: 264 IIVKARELGIADGRSPVSIAGGAIYFTCYLLDKPKTVREISTVAGVSEGTIKLVYK 319
>gi|335437678|ref|ZP_08560448.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334895047|gb|EGM33228.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 328
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI + + + E+ + + + L L +P + S ++PRF + L L++
Sbjct: 197 NPRSLDEIERVSRIDRMELTRTYRYVVRELNLEVKPADPES---YVPRFVSDLDLSEEVS 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + + ++P+ I+AAAIY A L ++R TQ E+ +V ++EVT+R Y
Sbjct: 254 RQARELIESARKEGVLSGKSPVGIAAAAIYAAALLSNERITQGEVSEVANISEVTIRNRY 313
Query: 310 KELLE 314
KELLE
Sbjct: 314 KELLE 318
>gi|383624782|ref|ZP_09949188.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 325
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L QP + S ++PRF + L L+ +
Sbjct: 196 TPRSLDEISAVSRVDKMELTRTYRYVIRELGLEVQPADPES---YVPRFVSDLDLSDETE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + + + + ++P+ ++AA +Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 253 RMARELLDSARKEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 312
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 313 KELLEASDTAAPA 325
>gi|448529404|ref|ZP_21620542.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445709166|gb|ELZ60999.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 324
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 108/188 (57%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++T++L A R+A
Sbjct: 135 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAG 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L QP + S ++PRF + L L+ A+
Sbjct: 195 TPRSLDEIAAVSRVEKDEIARTYRYVVRELKLEIQPADPES---YVPRFASDLGLSDEAE 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 252 RRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRY 311
Query: 310 KELLENWD 317
ELLE D
Sbjct: 312 HELLEAED 319
>gi|257076877|ref|ZP_05571238.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 305
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 5/183 (2%)
Query: 132 NLRAYLQIIDV-ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ+++ + LG+ DI + A ++R +R RS+E++ A++ + R
Sbjct: 116 NLALALQVLNEDGAKLGIPKDIKESAALIYRKAVEKNLIRGRSIESIVCASIYASCRMIN 175
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PRTL EIS + V +K+IGK + L + L L+ QP S ++ +FC L L+K
Sbjct: 176 IPRTLDEISKVSEVNKKKIGKAYRHLAKELALNLQPTTPYS---YVSQFCNKLDLDKQVI 232
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ + HI + T + P I+AAAIY+A K++TQ ++ +V+G+TEVT+R Y
Sbjct: 233 MDSEHIIRLAGESGLSTGKGPTGIAAAAIYIAAMKNGKQRTQKDVARVSGVTEVTIRNRY 292
Query: 310 KEL 312
KE+
Sbjct: 293 KEI 295
>gi|448316712|ref|ZP_21506293.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445607127|gb|ELY61021.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 318
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R + +R RS+E ++T+ L A R+
Sbjct: 132 NLQFALSEIDRMASALGVPRSVREVASVVYRRALNEDLIRGRSIEGVSTSCLYVACRQES 191
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L +P++ ++PRFC+ L ++ Q
Sbjct: 192 IPRSLEEVADVSRVEKKEIGRTYRYIAQELSLEMKPVDPKE---YVPRFCSALDSSEEVQ 248
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 249 AKAREIIDTTAEEGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 308
Query: 310 KELLE 314
+E +E
Sbjct: 309 QEQIE 313
>gi|433591402|ref|YP_007280898.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332920|ref|ZP_21522140.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433306182|gb|AGB31994.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445624764|gb|ELY78139.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 324
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 11/198 (5%)
Query: 124 TSSSVMMDNLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
TS + NL+ L +I +AS LGL + A ++R L RS+EA+ATA L
Sbjct: 127 TSKNARERNLKQALGEIERMASALGLPEPCRETAGVIYRRAVEEELLPGRSIEAMATACL 186
Query: 183 VQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRF 238
A R+ PRTL + + V + I + + L L L + PI+ ++P++
Sbjct: 187 YAAARQQGTPRTLVAFASVSRVEKLPIQRAYRYLSSELGLKIEPADPIH------YLPQY 240
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
+ L + + LA I E ++ + R+P ++AAAIY A +L D+ TQ I + T
Sbjct: 241 ASELGVGDETERLARKILEAAKDRDLHSGRSPAGLAAAAIYGAGRLTDEGLTQERIGEET 300
Query: 299 GLTEVTLRKVYKELLENW 316
G++ VT+R Y+ELL+ +
Sbjct: 301 GVSGVTVRNRYRELLDAY 318
>gi|20089499|ref|NP_615574.1| transcription initiation factor IIB [Methanosarcina acetivorans
C2A]
gi|24212485|sp|Q8TT29.1|TF2B_METAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19914407|gb|AAM04054.1| archaeal transcription factor B [Methanosarcina acetivorans C2A]
Length = 337
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL + + A ++R +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIEEVSRVSRKEIGRTYRFISRELALKLMPTSPID------YVPRFCSGLNLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q + I K + R P ++AAAIY+A L +R+TQ E+ V G+TEVT+R
Sbjct: 262 EVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEELD 332
>gi|73668919|ref|YP_304934.1| transcription initiation factor IIB [Methanosarcina barkeri str.
Fusaro]
gi|72396081|gb|AAZ70354.1| Transcription initiation factor IIB (TFIIB) [Methanosarcina barkeri
str. Fusaro]
Length = 337
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL + + A ++R +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIEEVSRVSRKEIGRTYRFISRELALKLMPTSPID------YVPRFCSGLNLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q + I K + R P ++AAAIY+A L +R+TQ E+ V G+TEVT+R
Sbjct: 262 EVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEELD 332
>gi|448491685|ref|ZP_21608525.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445692685|gb|ELZ44856.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 209
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 108/188 (57%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 20 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAG 79
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L QP + S ++PRF + L L+ A+
Sbjct: 80 TPRSLDEIAGVSRVEKDEIARTYRYVVRELKLEIQPADPES---YVPRFASDLGLSDEAE 136
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 137 RRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRY 196
Query: 310 KELLENWD 317
ELLE D
Sbjct: 197 HELLEAED 204
>gi|21227874|ref|NP_633796.1| transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452210347|ref|YP_007490461.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
gi|332321738|sp|P0CW15.1|TF2B_METMA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|332321739|sp|P0CW14.1|TF2B_METMZ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|14586422|emb|CAC42919.1| transcription factor B (TFB) [Methanosarcina mazei]
gi|20906289|gb|AAM31468.1| Transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452100249|gb|AGF97189.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
Length = 337
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL + + A ++R +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIEEVSRVSRKEIGRTYRFISRELALKLMPTSPID------YVPRFCSGLNLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q + I K + R P ++AAAIY+A L +R+TQ E+ V G+TEVT+R
Sbjct: 262 EVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEELD 332
>gi|448455329|ref|ZP_21594509.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445813931|gb|EMA63904.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 209
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 108/188 (57%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 20 NLKQALGEVDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAG 79
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L QP + S ++PRF + L L+ A+
Sbjct: 80 TPRSLDEIAAVSRVEKDEIARTYRYVVRELKLEIQPADPES---YVPRFASDLGLSDEAE 136
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + ++ + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R Y
Sbjct: 137 RRARSLLDTAKSQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVANISEVTIRNRY 196
Query: 310 KELLENWD 317
ELLE D
Sbjct: 197 HELLEAED 204
>gi|448431679|ref|ZP_21585190.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445687455|gb|ELZ39738.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 238
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 108/188 (57%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++T++L A R+A
Sbjct: 49 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAG 108
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L QP + S ++PRF + L L+ A+
Sbjct: 109 TPRSLDEIAAVSRVEKDEIARTYRYVVRELKLEIQPADPES---YVPRFASDLGLSDEAE 165
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 166 RRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRY 225
Query: 310 KELLENWD 317
ELLE D
Sbjct: 226 HELLEAED 233
>gi|448352384|ref|ZP_21541172.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
gi|445643145|gb|ELY96198.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
Length = 321
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A L+R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASALGVPRSVREVASVLYRRTLDEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EIG+ + + + L L QP++ ++PRFC+ L+L Q
Sbjct: 194 IPRSLDEIAAVSRVDRMEIGRTYRYISKELSLEMQPVDPKK---YVPRFCSELELPDEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + K + ++P +AAAIY A L +K+KTQ E+ V +TEVT+R Y
Sbjct: 251 SKANEIIDTTAEKGLLSGKSPTGYAAAAIYAAALLCNKKKTQREVADVAQVTEVTIRNRY 310
Query: 310 KE 311
+E
Sbjct: 311 QE 312
>gi|385804846|ref|YP_005841246.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730338|emb|CCC41667.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 374
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID ++S LG+ + A ++R A L RS+E +ATA L A R
Sbjct: 185 NLKHALGEIDRMSSALGIHETTRETASMIYRRALDADLLPGRSIEGVATAVLYAASRIDG 244
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
R++ E++ + VP EI + + + L L P +N I ++ RF + ++ N +
Sbjct: 245 VARSIDELASVSRVPALEIKRTYRYIIRELDLQIP-PTNPIE-YIGRFASAIECNDETER 302
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + K + ++P+ I+A+A+Y A QL + R TQ+EI ++EVT+R Y+
Sbjct: 303 RARALTQQATEKGVHSGKHPVGIAASALYAAGQLCNDRLTQSEISNAADVSEVTIRNRYR 362
Query: 311 ELLE 314
E+LE
Sbjct: 363 EILE 366
>gi|161527532|ref|YP_001581358.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338833|gb|ABX11920.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 301
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 146/326 (44%), Gaps = 45/326 (13%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQ----------CQNHHLFHIRAQD-TP 51
CP C AQG+ T + + C CG VI E+ Q+ H RA T
Sbjct: 9 CPRC--AQGKLVTDNESGEMF-CSKCGFVITEKLQEAGPEWRSFTQDEHGDRARAGAPTS 65
Query: 52 LCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELE 111
L + L +I P D +P +TA S+ + LR+ S S ++
Sbjct: 66 LTMHDMGLATIINPVNKDA----SGRP---LTA----SMKSTIERLRTWDSRSQVHEPVD 114
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN 171
R F S ++ L+ L I D + + A ++R +R
Sbjct: 115 RNFRQAFSE---------LNRLKDKLAISDA---------VIEKAAYIYRKALDKGLVRG 156
Query: 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI 231
RS+ AL +AL A R+ + PR L+++ AAN+ +K+I + ++L + L L P+ ++SI
Sbjct: 157 RSISALMASALYAACRDTETPRNLKDVEQAANIKRKDIARCYRLLVKELDLKMPV-TDSI 215
Query: 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ 291
+ R + + + + + A + + ++P+ ++AAA+YL+C + KTQ
Sbjct: 216 QC-VARIASRIGIAEKTKRYAVKVLKKAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQ 274
Query: 292 AEICKVTGLTEVTLRKVYKELLENWD 317
+I + +TEVT+R YK L E+ +
Sbjct: 275 RDIAEAANVTEVTIRNRYKGLKESLE 300
>gi|386875662|ref|ZP_10117821.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386806418|gb|EIJ65878.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 306
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 134/308 (43%), Gaps = 57/308 (18%)
Query: 25 CGSCGRVIAER--------------QCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDG 70
CGSCG V +ER + QN+ Q L ++ L +I + + D
Sbjct: 27 CGSCGSVFSERVIDSGVERSGYFSEEYQNNSR---SGQKISLKMIDMGLSTIIESKDRD- 82
Query: 71 VDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMM 130
TG + S+ +F R L +R S SS+ +
Sbjct: 83 -------STG-----KSLSVENRRMFYR--------LRMWDRN---------SRSSNAVK 113
Query: 131 DNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
+A+ + ++S L L + +H LFR + L RS + A + A R
Sbjct: 114 SFQKAFTLLDGISSKLALPESVTEHTAYLFRKIAAKKILTGRSTSGILCATIYIACRSTN 173
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS----QPINSNSIAVHMPRFCTLLQLNK 246
PRTLQ+++ A N+ ++++ + + L + LQ++ PI + R T +++
Sbjct: 174 IPRTLQDVADAGNIKKRDLQRTYRFLVKELQINPESYDPIE------FVTRIATAANISE 227
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ LA I + K T +NPI ++AAA+ LA + ++ +Q +I KV+G++ VT+R
Sbjct: 228 KTERLAFKILRISAKKNISTSKNPIGMAAAAVNLAVTINHEKISQVKISKVSGISSVTIR 287
Query: 307 KVYKELLE 314
KE+ E
Sbjct: 288 DRTKEIKE 295
>gi|448720890|ref|ZP_21703484.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445780503|gb|EMA31385.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 355
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 166 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 225
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L QP + S ++PRF + L L+ +
Sbjct: 226 TPRSLDEISAVSRVDKMELTRTYRYVIRELGLEVQPADPES---YVPRFVSDLDLSDETE 282
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + + + + ++P+ ++AA +Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 283 RMARELLDSAREEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 342
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 343 KELLEASDSAAPA 355
>gi|268324098|emb|CBH37686.1| transcription initiation factor IIB [uncultured archaeon]
gi|268326415|emb|CBH40003.1| transcription initiation factor IIB [uncultured archaeon]
Length = 319
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 2/183 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A +I +AS L L +I + A L+R +R RS+E + +A L + R+ PRT
Sbjct: 134 ALSEIDRMASALRLPINIREAASMLYRKAMKKHLIRGRSIEGITSAILYVSCRQYGVPRT 193
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
L+E+ + V QKEI + + L L L + S +PRFC+ L L+ + A
Sbjct: 194 LEEVRDVSRVGQKEISRAYRFLLRELDLK--VTPASPVDFVPRFCSQLDLSGEIRSKAVE 251
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
I + R PI I AAAIY+A L + +TQ E+ VTG+TEVT+R YKEL E
Sbjct: 252 IIKKASEAELTNGRGPIGIVAAAIYIAAILSGEHRTQKEVSDVTGVTEVTIRNRYKELSE 311
Query: 315 NWD 317
D
Sbjct: 312 QLD 314
>gi|448627270|ref|ZP_21671883.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445759099|gb|EMA10386.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 322
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 105/188 (55%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R A
Sbjct: 135 NLKQALGEIDRMASALGLPQNVRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAG 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + E+ + + + L L QP + ++PRF + L+L++ Q
Sbjct: 195 NPRSLDEMARVSRVEKMELTRTYRYIVRELSLEVQPADPEH---YLPRFISDLELSEETQ 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + ++P+ I+AAA+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 252 RQARDLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRY 311
Query: 310 KELLENWD 317
KELLE D
Sbjct: 312 KELLEAED 319
>gi|448386369|ref|ZP_21564495.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445655320|gb|ELZ08166.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 324
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 11/198 (5%)
Query: 124 TSSSVMMDNLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
TS + NL+ L +I +AS LGL + A ++R L RS+EA+ATA L
Sbjct: 127 TSKNSRERNLKQALGEIERMASALGLPEPCRETAGVIYRRAVEEELLPGRSIEAMATACL 186
Query: 183 VQAIREAQEPRTL---QEISIAANVPQKEIGKYIKI-LGEALQLSQPINSNSIAVHMPRF 238
A R+ PRTL +S +P + +Y+ LG ++ + PI+ ++P++
Sbjct: 187 YAAARQQGTPRTLVAFASVSRVEKLPVQRAYRYLSSELGLKIEPADPIH------YLPQY 240
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
+ L + + LA I E ++ + R+P ++AAAIY A +L D+ TQ I + T
Sbjct: 241 ASELGVGDETERLARKILEAAKDRDLHSGRSPAGLAAAAIYGAGRLTDEGLTQERIGEET 300
Query: 299 GLTEVTLRKVYKELLENW 316
G++ VT+R Y+ELL+ +
Sbjct: 301 GVSGVTVRNRYRELLDAY 318
>gi|449016686|dbj|BAM80088.1| transcription initiation factor like protein, pBrp [Cyanidioschyzon
merolae strain 10D]
Length = 981
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 116/284 (40%), Gaps = 71/284 (25%)
Query: 123 STSSSVMMDNLRAYLQIIDVASIL-----GLDYDICDHAFQLFRDCCSATCLRNRSVEAL 177
+ + +++ +R Y I+DV L L+ ++ + A ++R C LRNR EA
Sbjct: 429 AAAGALLRAYVRVYFVILDVVYALQMESEALEKELIETALAMYRVCVERISLRNRIPEAF 488
Query: 178 ATAALVQA-----IREAQE-----------------------------PRTLQEISIAAN 203
A A ++ A +R P ++ + A+
Sbjct: 489 AVACILLAWERVVVRHTHRVPAGQTSPTDGCTPSGIESESLLQYRGWNPVFVRRVVEAST 548
Query: 204 --VPQKEIG---KYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEV 258
PQ I Y++ + L +P +I+ MP++C LL ++ + LA I E
Sbjct: 549 PVWPQASIALVYDYMRRVLNTLLERRPDTVEAISHEMPKYCALLGVSAAVADLAHSIAEQ 608
Query: 259 VINKCFCTRRNPISISAAAIYLACQLEDKRKT---------------------------Q 291
+ C RR +S+ AAAIYLA LED R+ Q
Sbjct: 609 AVIHGVCARRTSVSVCAAAIYLANHLEDARRMPSGASNRTQSMDGSAHAAVVHDPVRLKQ 668
Query: 292 AEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFP 335
+I + L+EVTLRK +KE+L + D +LP+ Y P+ + P
Sbjct: 669 RDIAEKLQLSEVTLRKAHKEILTHLDVVLPAGYRPSGVLRRCLP 712
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 54 LVTSDLPSIPQPQQN-DGVDEDPFQPTGFITAFSAWSLVP--SPLFLRSSHSFSGQLAEL 110
+VT D+ S P G EDPF G IT SA L+P L + H SG LAE+
Sbjct: 269 VVTPDMHSEPYSFLGFTGAPEDPFASQGLIT--SACFLLPRVDAFPLVTVHKVSGALAEM 326
Query: 111 ERTFELLSSSTTSTS 125
ER L +S+T +S
Sbjct: 327 ERLLSFLGTSSTHSS 341
>gi|159041370|ref|YP_001540622.1| transcription initiation factor IIB [Caldivirga maquilingensis
IC-167]
gi|189029851|sp|A8MCX6.1|TF2B_CALMQ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|157920205|gb|ABW01632.1| Transcription factor TFIIB cyclin-related [Caldivirga
maquilingensis IC-167]
Length = 336
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 108/217 (49%), Gaps = 6/217 (2%)
Query: 109 ELERTFELLS----SSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCC 164
+L++ E+L +S + ++A ++ +A LG+ D A +++
Sbjct: 120 DLKKKLEILKYKKWQQRIRVQTSYERNLVQATHELNRIAHQLGVPKSCMDEALAVYKQVL 179
Query: 165 SATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQ 224
+ ++ RSVEA+ A L A R PR+L EIS P+KEI + +++ L++
Sbjct: 180 KSGLVKGRSVEAIIAACLHMACRMQGMPRSLDEISQYTRAPRKEIARCFRLIARELRIRL 239
Query: 225 PINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQL 284
P++ ++P+ L+L A + E +K ++P ++AAA+Y+A L
Sbjct: 240 PLSDPR--QYVPKIVEQLKLPGDIAKEAIRVLEEAKDKGLTAGKDPAGLAAAAVYIASLL 297
Query: 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
+ + +TQ EI + +TEVT+R YKEL + + +P
Sbjct: 298 KGEVRTQKEIAQAAQVTEVTVRNRYKELAKELNIKIP 334
>gi|448405176|ref|ZP_21572617.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
gi|445662584|gb|ELZ15349.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
Length = 325
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R S +R RS+E +AT+ L R+
Sbjct: 139 NLQFALSEIDRMASALGVPRSVREVASVIYRQALSEDLIRGRSIEGVATSCLYAGCRQEG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L +P + ++PRFC+ L++++ +
Sbjct: 199 IPRSLEEVTEVSRVGKKEIGRTYRYIAKELSLEMKPADPKE---YVPRFCSDLEVSEEVK 255
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A I + + + ++P +AAAIY A L +++KTQ E+ +V +TEVT+R Y
Sbjct: 256 MKAIEIIDESAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQKEVAEVAQVTEVTIRNRY 315
Query: 310 KELLE 314
+E +E
Sbjct: 316 QEQIE 320
>gi|386874729|ref|ZP_10116955.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807352|gb|EIJ66745.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 301
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 144/319 (45%), Gaps = 31/319 (9%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSI 62
CP C AQG+ T + + C CG VI E+ + + QD
Sbjct: 9 CPRC--AQGKLVTDNESGEMF-CSKCGFVITEKLQEAGPEWRSFTQD------------- 52
Query: 63 PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQ--LAELERTFELLSSS 120
G PT + + +P+ + SG+ A ++ T E L +
Sbjct: 53 -----EGGNKARAGAPTSLTMHDMGLATIINPV----NKDASGRPLTASMKSTIERLRTW 103
Query: 121 TTSTSSSVMMD-NLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALA 178
+ + +D N R A+ ++ + L + + + A ++R +R RS+ AL
Sbjct: 104 DSRSQVHEPVDRNFRQAFSELNRLKDKLAISDAVIEKAAYIYRKALEKGLVRGRSISALM 163
Query: 179 TAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRF 238
+AL A R+ PR L+++ AAN+ +K+I + ++L + L L P+ ++SI + R
Sbjct: 164 ASALYAACRDTATPRNLKDVEEAANIKRKDIARCYRLLVKELDLKMPV-TDSIQC-VARI 221
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
+ + + + + A + ++ ++P+ ++AAA+YL+C + KTQ +I +
Sbjct: 222 ASRIGIAEKTKRYAVKVLKLAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAA 281
Query: 299 GLTEVTLRKVYKELLENWD 317
+TEVT+R YK L E+ D
Sbjct: 282 NVTEVTIRNRYKGLKESLD 300
>gi|222479752|ref|YP_002565989.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452654|gb|ACM56919.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 326
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 106/188 (56%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++T++L A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L QP + S ++PRF + L L+ A+
Sbjct: 197 TPRSLDEIAAVSRVEKDEIARTYRYVVRELKLEIQPADPES---YVPRFASDLGLSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R Y
Sbjct: 254 RRARSLLNTAKEQGLHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVANISEVTIRNRY 313
Query: 310 KELLENWD 317
ELLE D
Sbjct: 314 HELLEAED 321
>gi|289937651|ref|YP_003482253.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|448283863|ref|ZP_21475128.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|289533342|gb|ADD07691.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445571958|gb|ELY26500.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
Length = 321
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 5/184 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS +G+ + + A L+R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASAMGVPRSVREVASVLYRRALEEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EIG+ + + + L L QP++ ++PRFC+ L+L Q
Sbjct: 194 IPRSLDEIAAVSRVERMEIGRTYRYISKELGLEMQPVDPKK---YVPRFCSELELPDEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + K + ++P +AAAIY A L +K+KTQ E+ V +TEVT+R Y
Sbjct: 251 SKANEIIDTTAEKGMLSGKSPTGYAAAAIYAAALLCNKKKTQREVADVAQVTEVTIRNRY 310
Query: 310 KELL 313
+E +
Sbjct: 311 QEQI 314
>gi|448308419|ref|ZP_21498296.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593707|gb|ELY47876.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 321
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A L+R S +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASALGVPRSVREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EIG+ + + + L L +P++ ++PRFC+ L L++ Q
Sbjct: 194 IPRSLDEVAAVSRVERMEIGRTYRYISQELSLEMEPVDPKK---YVPRFCSELDLSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY + L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 AKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRY 310
Query: 310 KELLE 314
+E ++
Sbjct: 311 QEQID 315
>gi|299748194|ref|XP_002911260.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|298407858|gb|EFI27766.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 346
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 128/307 (41%), Gaps = 35/307 (11%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CG+CG V+ +R + A D D PS G DP
Sbjct: 51 CGNCGLVLGDRVIDTRSEWRTFANDE------GDDPS------RVGAASDPL-------- 90
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
+ + + R S G EL+R +++ S ++ + L A+ I +
Sbjct: 91 LEGIEQLDTVISFRDGGS--GIARELQR------AASRSQNNRSERNLLTAFRDISNWCD 142
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
L I D A QL++ LR + VEA+ A + A R+A PRT +EI V
Sbjct: 143 QFSLPKTISDIAKQLYKRADEEKLLRGKPVEAVIAACIFIACRKAHVPRTFREICNLTRV 202
Query: 205 PQKEIGKYIKILGEALQLSQP-----INSNSIAVH--MPRFCTLLQLNKSAQVLATHIGE 257
+K +G+ K L ++L LS P N+ + + R+C L L + Q + + I
Sbjct: 203 SKKMLGQCYKALEQSLNLSGPESMPLANTPTTGPEKLLVRYCNHLDLPANVQAICSEIIV 262
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
N R+PISI+ AIY C L K K EI V G++E T++ VY+ + +
Sbjct: 263 NARNHGIADGRSPISIAGGAIYFTCLLLGKPKPIREISAVAGVSEGTIKLVYRLYYNDRE 322
Query: 318 DLLPSNY 324
L+ +
Sbjct: 323 KLVKKEW 329
>gi|448332083|ref|ZP_21521331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445627928|gb|ELY81242.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 354
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 165 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 224
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 225 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 281
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AA++Y A L +++ TQ E+ V ++EVT+R Y
Sbjct: 282 RMARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVASISEVTIRNRY 341
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 342 KELLEASDTAAPA 354
>gi|448329711|ref|ZP_21519008.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613635|gb|ELY67331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 326
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 197 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 254 RMARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 313
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 314 KELLEASDTAAPA 326
>gi|448305351|ref|ZP_21495283.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589198|gb|ELY43434.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 334
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 97/185 (52%), Gaps = 3/185 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + A ++R L RS+E +ATAAL A+R+
Sbjct: 141 NLKHALGEIDRMGSALGIPDATLETASVIYRRALEENLLPGRSIEGMATAALNAAVRQTG 200
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR++ E++ + + E + + L L+L P+ ++PR+ + L++ +
Sbjct: 201 VPRSIDELATVSRIDYLEAARAYRYLVRELEL--PMAPPDPLEYLPRYASALEITAETER 258
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + E + + ++P+ ++AAAIY +L + TQA++ +++VT+R Y+
Sbjct: 259 RAHDLLEGGMEAGLHSGKHPVGLAAAAIYAGSRLTGEALTQADVSDAIDVSKVTIRNRYQ 318
Query: 311 ELLEN 315
ELLE+
Sbjct: 319 ELLEH 323
>gi|407465174|ref|YP_006776056.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048362|gb|AFS83114.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 315
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 141/332 (42%), Gaps = 59/332 (17%)
Query: 11 GRCATTS------TGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQ 64
GRC S TG CG CG VI E QD+ P
Sbjct: 17 GRCGKNSMLTDNVTGERF--CGKCGYVITET-----------LQDSG--------PEWRS 55
Query: 65 PQQNDGVD-EDPFQPTGFITAFSAWSLVPSPLFLRSSHS--FSGQLAELERTFELLSSST 121
+ G D PT + + SP+ SS S + +ER S S
Sbjct: 56 FSKEGGADPTRTGAPTSLAMHDRGLATIISPMNKDSSGKPLTSTMKSTIERLRTWDSRSK 115
Query: 122 TSTSSSVMMDNLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
+ SS NLR L ++ + L L + + A ++R ++ RS+ AL A
Sbjct: 116 VNASSD---KNLRQALSELSTLKDKLSLSDAVIEKASYIYRKALEKGLVKGRSISALIAA 172
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPI-----------NSN 229
+L A R+ + PRTL+++S A N+ +K+I + +IL + L+L P+ +S
Sbjct: 173 SLYAACRDTETPRTLKDVSDAGNIKKKDISRCYRILHQELELKMPVVDPVQCVARIASSI 232
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
I R+ +++ K AQ G ++P+ ++AAA+YL+C + K
Sbjct: 233 GITEKTKRYA--VKVLKDAQAHEESAG-----------KDPMGLAAAALYLSCVKNGEDK 279
Query: 290 TQAEICKVTGLTEVTLRKVYKEL-LENWDDLL 320
TQ +I + +TEVT+R YK L L+ D+L
Sbjct: 280 TQRDIAEAANVTEVTIRNRYKGLRLDQNMDML 311
>gi|399578723|ref|ZP_10772468.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236182|gb|EJN57121.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LG + A L+R + +R RS+EA++T+ L A R
Sbjct: 133 NLQFALSEMDRMASALGAPRSTREVASVLYRRALNEDLIRGRSIEAVSTSCLYAACRMEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ A VP KEIG+ + + + L+L QP++ ++PRF + L +++ +
Sbjct: 193 IPRSLDEVTEVARVPYKEIGRTYRYIAQELKLEMQPVDPKE---YVPRFASELGVSEEVK 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I +V + + ++P +AAA+Y A L +++KTQ E+ +V+ +TEVT+R Y
Sbjct: 250 QKANEIIDVSAEQGLLSGKSPTGFAAAALYAASLLCNEKKTQREVAEVSQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|448666488|ref|ZP_21685133.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445771619|gb|EMA22675.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 322
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 104/188 (55%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R A
Sbjct: 135 NLKQALGEIDRMASALGLPQNVRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAG 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + E+ + + + L L QP + ++PRF + L L++ Q
Sbjct: 195 NPRSLDEMARVSRVEKMELTRTYRYIVRELSLEVQPADPEH---YLPRFISDLGLSEETQ 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + ++P+ I+AAA+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 252 RQARDLIEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRY 311
Query: 310 KELLENWD 317
KELLE D
Sbjct: 312 KELLEAED 319
>gi|393796305|ref|ZP_10379669.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 287
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 97/182 (53%), Gaps = 3/182 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L ++ + L + + + A ++R +R RS+ AL +AL A R+ +
Sbjct: 100 NLRQALSELTRLKDKLAVSDAVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTE 159
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL+++S A N+ +K+I + +IL + L+L P+ + I + R + L +++ +
Sbjct: 160 TPRTLKDVSDAGNIKKKDIARCYRILHQELELKMPV-VDPIQC-IARIASKLGISEKTKR 217
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+YL+C + TQ +I + +TEVT+R YK
Sbjct: 218 YAVKVLKTAQEHEESAGKDPMGLAAAALYLSCVSNSENMTQRDIAEAASVTEVTIRNRYK 277
Query: 311 EL 312
L
Sbjct: 278 GL 279
>gi|170291077|ref|YP_001737893.1| transcription factor TFIIB cyclin-related protein [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170175157|gb|ACB08210.1| Transcription factor TFIIB cyclin-related [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 356
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 2/179 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A +I D A L L + + A L+R A ++ RS++A+ A + A R P+T
Sbjct: 143 ALRKIRDAADSLVLPQETIEDAATLYRMAARAGLVKGRSMDAMVAAVIYAACRRTDVPKT 202
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
L+EIS + +KEIG+ + L L + P V++ + L L + A
Sbjct: 203 LEEISKFFALEEKEIGRSFRFLFRKLGIQIPPPKPENFVYL--IASKLSLPEEVATQAIR 260
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELL 313
I ++ R P+ ++AAA+Y+ACQ +TQ E+ + +TEVT+R YKEL+
Sbjct: 261 IIKIAKRNGATMGREPVGVAAAAVYMACQELGLHRTQRELAQAANVTEVTVRNRYKELI 319
>gi|313127037|ref|YP_004037307.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288496|ref|ZP_21479694.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293402|gb|ADQ67862.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445568881|gb|ELY23456.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 343
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 105/187 (56%), Gaps = 3/187 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R L RS+E +ATA+L A R AQ
Sbjct: 145 NLKQALGEIDRMASALGLPESVRETASVIYRRALEDDLLPGRSIEGIATASLHAAARMAQ 204
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E++ + V ++E + + + +LS I ++PRF + + + K +
Sbjct: 205 VPRSLDEVAHVSRVDEEEFERAYRYI--VRELSLEIKPADPTEYLPRFASDIDVPKETER 262
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + E + ++P+ ++AAA+Y A QL +++ TQ+++ VT ++EVT+R Y+
Sbjct: 263 TARELLENAKTVGIHSGKSPVGLAAAALYAAAQLTNEKVTQSDVSDVTDISEVTIRNRYQ 322
Query: 311 ELLENWD 317
ELLE WD
Sbjct: 323 ELLEAWD 329
>gi|448343629|ref|ZP_21532552.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445622685|gb|ELY76131.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 329
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 104/188 (55%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL D+ + A ++R L RS+E +ATA+L A R+A
Sbjct: 141 NLKQALGEIDRMASALGLPDDVRETASVIYRRALEDDLLPGRSIEGVATASLYAAARQAG 200
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L QP + S ++PRF + L L +
Sbjct: 201 TPRSLDEISAVSRVDKAEVARTYRYVVRELGLEVQPADPES---YVPRFASDLDLADETE 257
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A + K + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R Y
Sbjct: 258 LRARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVASISEVTIRNRY 317
Query: 310 KELLENWD 317
ELLE D
Sbjct: 318 HELLEAED 325
>gi|194701258|gb|ACF84713.1| unknown [Zea mays]
Length = 198
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 97/188 (51%), Gaps = 7/188 (3%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI-SI 200
+A LGL I D A ++F+ +R R+ +A+ A L A R+ PRT++EI S+
Sbjct: 1 MADRLGLVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSV 60
Query: 201 AANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLNKSAQVLATHIG 256
A +KEIG+ + + + L++ + +H + RFC+ L + A A
Sbjct: 61 ANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAVNAAKE-- 118
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENW 316
V ++ RR+PISI+AA IY+ QL + +K +I TG+ E T+R YK+L
Sbjct: 119 AVQRSEELDIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYA 178
Query: 317 DDLLPSNY 324
L+P+ Y
Sbjct: 179 SRLIPNTY 186
>gi|328858041|gb|EGG07155.1| hypothetical protein MELLADRAFT_43314 [Melampsora larici-populina
98AG31]
Length = 345
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 12/197 (6%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+L I D+ + L + D A QLFR LR + ++A+ A + A R+++ R+
Sbjct: 130 AFLSIQDMCDTISLPRTVTDIAKQLFRRADEEKLLRGKQIDAVIAACIFIACRQSKVGRS 189
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH------------MPRFCTLL 242
+E+ VP+K+IG+ K L A + S ++ M RFC+ L
Sbjct: 190 FKEVVALTRVPKKQIGQCFKALSAAFETSAVGGGGALNTDTGESSGAGAEDLMARFCSHL 249
Query: 243 QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
L Q A I R+PIS++ A IY A L K+ +I K+ G++E
Sbjct: 250 GLPYYVQSGAKRIAITQREIGILAGRSPISVAGACIYFASHLFGCGKSAKDIAKIAGVSE 309
Query: 303 VTLRKVYKELLENWDDL 319
VT++ YK L ++L
Sbjct: 310 VTIKIAYKLLHPQREEL 326
>gi|429961945|gb|ELA41489.1| hypothetical protein VICG_01473 [Vittaforma corneae ATCC 50505]
Length = 312
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Query: 152 ICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211
ICD A +F+ S L+ +++E A L A + PRT +EIS+ V ++EIG+
Sbjct: 130 ICDRAQHIFKMVESQKLLKGKNLEGSVGACLYIACKLENAPRTFKEISVITGVQKREIGR 189
Query: 212 YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPI 271
K++ + + + + I + RFC L L+ Q +A+ I + T ++P
Sbjct: 190 CYKLIAKDVDTNNYAPTGDI---VSRFCADLNLSLKIQRVASTISQKTYEIGALTGKSPD 246
Query: 272 SISAAAIYLACQLE-DKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSN 323
SI+AA IYL + + + Q +I V G+TE+T++ YK+LL D+++P +
Sbjct: 247 SIAAAIIYLVLNIFPEHKDLQKDIHLVAGVTEITIKNTYKDLLAFKDEIIPED 299
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC + K+ A HI ++V ++ +N A +Y+AC+LE+ +T EI +
Sbjct: 120 FCERSNICKTICDRAQHIFKMVESQKLLKGKNLEGSVGACLYIACKLENAPRTFKEISVI 179
Query: 298 TGLTEVTLRKVYKELLENWDDLLPSNYTP 326
TG+ + + + YK + ++ D +NY P
Sbjct: 180 TGVQKREIGRCYKLIAKDVD---TNNYAP 205
>gi|401403652|ref|XP_003881529.1| At4g37010, related [Neospora caninum Liverpool]
gi|325115942|emb|CBZ51496.1| At4g37010, related [Neospora caninum Liverpool]
Length = 455
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 144/346 (41%), Gaps = 41/346 (11%)
Query: 3 CPYCSAAQGRCAT----TSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSD 58
CPYC A+ T +S+G + C CG ++ E+ + +
Sbjct: 108 CPYCGPARNGAQTIVFDSSSGDQL--CRECGLIVEEKVLSEEQEWR-------------N 152
Query: 59 LPSIPQPQQNDGVDEDPFQPTGFITAFSAW----SLVPSPLFLRSSHSFSGQLAELERTF 114
+ G D + A AW + + L S +G+ A +
Sbjct: 153 FSAEAASSSRGGADRNRVG-----DALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRL 207
Query: 115 ELLSSSTTSTSSSVMMDNLR----AYLQIIDVASILGLDYDICDHAFQLFRDCC-SATCL 169
+ L + TS + + R A+ I + L ++ + A ++ +D L
Sbjct: 208 QQLHEAATSGLGTGVGSGDRQLKVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGAQL 267
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAAN-VPQKEIGKYIKILGEALQLSQPINS 228
R RS A + A REA RT++E+ + + +KE+GK I + + L ++S
Sbjct: 268 RTRSNATTMLAIIYLACREAGVTRTVKELVVYDRAISEKELGKAINRIKKLLPQRGGVSS 327
Query: 229 NSIAVHM-PRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK 287
A + PR+C+ LQL+ +A H+ + + R P S++AAAI+L +L +
Sbjct: 328 AESATQLLPRYCSRLQLSMHVADVAEHVAKRATQVIISSHR-PNSVAAAAIWLVVKLLNA 386
Query: 288 RKT-----QAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAV 328
+EI VTG E TLR +YK++L+ + LLP + P V
Sbjct: 387 STNPNLPKASEIANVTGAGEHTLRSIYKDMLDVAEHLLPREFQPTV 432
>gi|448524328|ref|ZP_21619310.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445700398|gb|ELZ52399.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 269
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 110/194 (56%), Gaps = 4/194 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
++SV+ A +I +AS LGL ++ + A ++R L RS+E ++TA+L
Sbjct: 74 TASVIYRRALALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYA 133
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQ 243
A R+A PR+L EI+ + V + EI + + + L+L QP + S ++PRF + L
Sbjct: 134 AARQAGTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLEIQPADPES---YVPRFASDLG 190
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L+ A+ A + + + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EV
Sbjct: 191 LSDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEV 250
Query: 304 TLRKVYKELLENWD 317
T+R Y ELLE D
Sbjct: 251 TIRNRYHELLEAED 264
>gi|448312070|ref|ZP_21501821.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445603031|gb|ELY57000.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 323
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS L + + + A ++R +R RS+E +AT+ L A R
Sbjct: 136 NLQFALSEIDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQ-PINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V +KEIG+ + + + L L P++ ++PRFC+ L+L++
Sbjct: 196 IPRSLEEVATVSRVERKEIGRTYRYVAQELGLEMAPVDPKK---YVPRFCSDLELSEEVT 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + K + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 253 AKANEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 312
Query: 310 KELLE 314
+E +E
Sbjct: 313 QEQIE 317
>gi|448401933|ref|ZP_21571844.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445665991|gb|ELZ18662.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 325
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 196 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AA++Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 253 RMARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 312
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 313 KELLEASDTAAPA 325
>gi|329764659|ref|ZP_08256266.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138857|gb|EGG43086.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 287
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 97/182 (53%), Gaps = 3/182 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L ++ + L + + + A ++R +R RS+ AL +AL A R+ +
Sbjct: 100 NLRQALSELTRLKDKLAVSDAVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTE 159
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL+++S A N+ +K+I + +IL + L+L P+ + I + R + L +++ +
Sbjct: 160 TPRTLKDVSDAGNIKKKDIARCYRILHQELELKMPV-VDPIQC-IARIASKLGISEKTKR 217
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+YL+C + TQ +I + +TEVT+R YK
Sbjct: 218 YAVKVLKTAQEHEESAGKDPMGLAAAALYLSCVSNSENMTQRDIAEAASVTEVTIRNRYK 277
Query: 311 EL 312
L
Sbjct: 278 GL 279
>gi|448301022|ref|ZP_21491017.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584536|gb|ELY38851.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 321
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A L+R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EIG+ + + + L L +P++ ++PRFC+ L L++ Q
Sbjct: 194 IPRSLDEVAAVSRVERMEIGRTYRYISQELSLEMEPVDPKK---YVPRFCSELSLSEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + K + ++P +AAAIY + L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 AKANEIIDTTAEKGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRY 310
Query: 310 KE 311
+E
Sbjct: 311 QE 312
>gi|433590514|ref|YP_007280010.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433305294|gb|AGB31106.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 196 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AA++Y A L +++ TQ E+ V ++EVT+R Y
Sbjct: 253 RMARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVASISEVTIRNRY 312
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 313 KELLEASDTAAPA 325
>gi|167045037|gb|ABZ09701.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 300
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 97/180 (53%), Gaps = 2/180 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ ++ + L L + + A ++R + ++ R++ AL +AL A RE PRT
Sbjct: 121 AFNELYRLKDKLTLSDSVVEKAAYIYRKAINKKLVKGRTISALMASALYAACREVGTPRT 180
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
L++IS N+ ++++ ++L L L P+ NS+ ++ R + + +++ + +AT
Sbjct: 181 LKDISDTTNIKKRDLAANYRLLVNELDLKIPV-VNSVH-NVARIASKIGISEKTKRIATE 238
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
I +NP+S++A A+Y++C+ + +Q ++ + +TEVT+R YK LLE
Sbjct: 239 ILRKAEESEISAGKNPMSLAATALYISCRKTGENYSQRDLAEAASVTEVTIRNRYKGLLE 298
>gi|448383049|ref|ZP_21562478.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445660229|gb|ELZ13026.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 325
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 196 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AA++Y A L +++ TQ E+ V ++EVT+R Y
Sbjct: 253 RMARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVASISEVTIRNRY 312
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 313 KELLEASDTAAPA 325
>gi|399575166|ref|ZP_10768924.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
gi|399239434|gb|EJN60360.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
Length = 329
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R+A
Sbjct: 140 NLKQALGEIDRMASGLGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAG 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L QP + ++PRF + L L+ ++
Sbjct: 200 TPRSLDEIASVSRVDKDEIARTYRYVVRELKLEIQPADPEQ---YVPRFASDLDLSDESE 256
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R Y
Sbjct: 257 RRARKLLQNAKEEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSDVANISEVTIRNRY 316
Query: 310 KELLE 314
ELLE
Sbjct: 317 HELLE 321
>gi|409730105|ref|ZP_11271696.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722749|ref|ZP_21705280.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788886|gb|EMA39587.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 327
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 110/193 (56%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R L RS+E ++T+AL A R+A
Sbjct: 138 NLKQALGEIDRMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAG 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + E+ + + + L L QP + A ++PRF + L L++ ++
Sbjct: 198 TPRSLDEIATVSRVGKMELTRTYRYVVRELGLEIQPADP---ASYVPRFASDLDLSEESE 254
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E ++ + ++P+ ++AAA+Y A L +++ TQ + +V ++EVT+R Y
Sbjct: 255 RRARQLLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVADISEVTIRNRY 314
Query: 310 KELLENWDDLLPS 322
KELLE D++ +
Sbjct: 315 KELLEAEGDVMAA 327
>gi|344303899|gb|EGW34148.1| hypothetical protein SPAPADRAFT_59562 [Spathaspora passalidarum
NRRL Y-27907]
Length = 342
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 13/199 (6%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY++I ++ + L + D A L++ LR +S +++ A ++ R + PRT
Sbjct: 126 AYIRIQELCNGYQLPKTVTDAAKHLYKAVREDKLLRGKSQDSIMAAVILLGCRRSDVPRT 185
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQ---LSQPINS-----NSIAVH-----MPRFCTL 241
L+EI NVP K+I K +++ + + ++ P +S S+ H + RFC+
Sbjct: 186 LEEIRALTNVPSKQIAKVARLIKKIIHSHLVANPQSSILEETTSLTTHSAEDLIRRFCSH 245
Query: 242 LQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 301
L L A HI + R+P +I+AAAIYLA + D TQ +I TG++
Sbjct: 246 LGLTPQVTNAAEHIARQCKDIGVLAGRSPTTIAAAAIYLAGKAFDVELTQQQIRDKTGVS 305
Query: 302 EVTLRKVYKELLENWDDLL 320
T++ YK + EN D LL
Sbjct: 306 IGTIKTSYKVMYENKDKLL 324
>gi|448506641|ref|ZP_21614597.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445699591|gb|ELZ51615.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
Length = 179
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 102/177 (57%), Gaps = 4/177 (2%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+AS LGL ++ + A ++R L RS+E ++TA+L A R+A PR+L EI+
Sbjct: 1 MASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGV 60
Query: 202 ANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVI 260
+ V + EI + + + L+L QP + S ++PRF + L L+ A+ A + +
Sbjct: 61 SRVEKDEIARTYRYVVRELKLEIQPADPES---YVPRFASDLGLSDEAERRARSLLDTAK 117
Query: 261 NKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y ELLE D
Sbjct: 118 EQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRYHELLEAED 174
>gi|322371117|ref|ZP_08045669.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549107|gb|EFW90769.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 324
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R L RS+E +AT AL A R+A+
Sbjct: 135 NLKQALGEIDRMASSLGLPDTVRETASVIYRRALDEDLLPGRSIEGVATGALYAAARQAR 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EI + + + L L +P + S ++PRF + L L+ +
Sbjct: 195 TPRSLDELTAVSRVEKDEIARTYRYIARELGLEIEPADPKS---YVPRFASELDLSDETE 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R Y
Sbjct: 252 RRARSLLDTATEKGLHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSDVANISEVTIRNRY 311
Query: 310 KELLE 314
ELL+
Sbjct: 312 HELLD 316
>gi|448331660|ref|ZP_21520921.1| transcription initiation factor IIB [Natrinema versiforme JCM
10478]
gi|445608983|gb|ELY62798.1| transcription initiation factor IIB [Natrinema versiforme JCM
10478]
Length = 235
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 110/187 (58%), Gaps = 9/187 (4%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+ L A R+
Sbjct: 49 NLQFALSEIDRMASALGVPRSVREIASVIYRRALDEDLIRGRSIEGVATSCLYAACRQDG 108
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EI+ + V +KEIG+ + + + L L +P++ ++PRFC+ +L+ S +
Sbjct: 109 IPRSLEEIADVSRVERKEIGRTYRYVAQELSLEMEPVDPKE---YVPRFCS--ELDSSEE 163
Query: 250 VLA--THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
VLA I +V ++ + ++P +AAAIY A L +++KTQ ++ V +TEVT+R
Sbjct: 164 VLAKANEIIDVTADQGLLSGKSPTGYAAAAIYAASLLCNEKKTQRDVADVAQVTEVTIRN 223
Query: 308 VYKELLE 314
Y+E +E
Sbjct: 224 RYQEQIE 230
>gi|448497537|ref|ZP_21610490.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445699768|gb|ELZ51788.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 340
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 2/180 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + L L + D A LF + LR RS+E A A + A R A RT
Sbjct: 162 AYTEIRRLTGALELPDSVRDAACALFDSAQDESLLRGRSLEGFAAACVYVACRTADVART 221
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ E+ A + E + L L PI + A ++PRF + L + + + A
Sbjct: 222 VGEVCAEAKATEDEHRAAFDAMNRELGL--PIAPSGPAEYLPRFASDLGCDPAVERRAGE 279
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ E + + RNP+ ++AA +Y A + D TQ E V G+T VT+R+ Y +L E
Sbjct: 280 LAERAVEEGIANGRNPVGVAAACLYTAARELDAECTQREAADVAGVTPVTVRRTYVDLTE 339
>gi|397773294|ref|YP_006540840.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340933|ref|ZP_21529900.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682387|gb|AFO56764.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629271|gb|ELY82562.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 197 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 254 RMARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 313
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 314 KELLEASDTAAPA 326
>gi|448391802|ref|ZP_21566897.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445665214|gb|ELZ17892.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 323
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 134 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 194 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R Y
Sbjct: 251 RMARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRY 310
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 311 KELLEASDTAAPA 323
>gi|448411918|ref|ZP_21576274.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669852|gb|ELZ22460.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 326
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 107/188 (56%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R L RS+E +ATA+L A R+A
Sbjct: 139 NLKQALGEIDRMASALGLPKTVRETASVIYRRALEENLLPGRSIEGVATASLYAAARQAN 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + E+ + + + L L +P + S ++PRF + L+L+ +
Sbjct: 199 TPRSLDEMTAVSRVEKMELTRTYRYVVRELNLEIKPADPES---YLPRFVSDLELSDDTE 255
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + ++ + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R Y
Sbjct: 256 RRARELIVSARDQGILSGKSPVGLAAAAVYAAALLTNEKVTQSEVSDVANISEVTIRNRY 315
Query: 310 KELLENWD 317
KELLE+ D
Sbjct: 316 KELLESVD 323
>gi|389746675|gb|EIM87854.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 353
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 102/232 (43%), Gaps = 17/232 (7%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDC 163
SG EL+R +S +T S + L A+ I L I D A QL++
Sbjct: 108 SGMARELQRA----ASRAQNTRSERNL--LSAFRDISSWCDQFSLPKTISDIAKQLYKRS 161
Query: 164 CSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS 223
LR + +EA+ A + A R+A PRT +EI +V +K +G+ K L +A LS
Sbjct: 162 DEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQCYKALEQAFNLS 221
Query: 224 ------QPINSNSIAVHMP-----RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPIS 272
N + P R+C L L + I N+ R+PIS
Sbjct: 222 PGAQNHNSTNGTQVISTGPEDLLIRYCNHLDLPPYFHGICKDIVVEARNRGIADGRSPIS 281
Query: 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNY 324
I+ AI+ C L K K+ EIC V G++E T++ VYK + D L+ +
Sbjct: 282 IAGGAIFFTCFLLGKPKSLREICTVAGVSEGTVKLVYKLYCADKDKLVKQKW 333
>gi|332796366|ref|YP_004457866.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332694101|gb|AEE93568.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 304
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 104/189 (55%), Gaps = 2/189 (1%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
SS+ + +A ++ + ++LGL + D A ++R +R RS+E++ A++ +
Sbjct: 109 SSIDRNLAQAMNELERIGNLLGLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAS 168
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R + RTL EI+ +KE+ + ++L L + P++ ++ R +LL L+
Sbjct: 169 CRRIKIARTLDEIAQYTKANRKEVARCYRLLLRELNVEVPVSDPK--DYVTRIGSLLGLS 226
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
+ LA I E N ++P ++AAAIY+A + D+R+TQ EI +V G+TEVT+
Sbjct: 227 GATMKLAAEILEKAKNAGLTAGKDPAGLAAAAIYIAALMNDERRTQKEIAQVAGVTEVTV 286
Query: 306 RKVYKELLE 314
R YKEL++
Sbjct: 287 RNRYKELIQ 295
>gi|448345937|ref|ZP_21534826.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633870|gb|ELY87057.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 197 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 254 RMARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 313
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 314 KELLEASDTAAPA 326
>gi|448336782|ref|ZP_21525873.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627873|gb|ELY81188.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 326
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 197 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 254 RMARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 313
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 314 KELLEASDTAAPA 326
>gi|344212001|ref|YP_004796321.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343783356|gb|AEM57333.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 322
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + + ++R L RS+E +AT+AL A R A
Sbjct: 135 NLKQALGEIDRMASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAG 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + E+ + + + L L QP + ++PRF + L L++ Q
Sbjct: 195 NPRSLDEMARVSRVEKMELTRTYRYIVRELSLEVQPADPEH---YLPRFISDLGLSEETQ 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + ++P+ I+AAA+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 252 RQARDLIEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRY 311
Query: 310 KELLENWD 317
KELLE D
Sbjct: 312 KELLEAED 319
>gi|167043157|gb|ABZ07866.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW141J13]
Length = 305
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 96/181 (53%), Gaps = 4/181 (2%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ ++ + L L + + A ++R + ++ R++ +L +AL A RE PRT
Sbjct: 124 AFNELYRLKDKLSLSDSVVEKAAYIYRKAINKKLVKGRTISSLMASALYAACREVGTPRT 183
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH-MPRFCTLLQLNKSAQVLAT 253
L++IS N+ ++++ ++L L L P+ +VH + R + + +++ + LAT
Sbjct: 184 LKDISDTTNIKKRDLASNYRLLVNELDLKIPVVD---SVHNVARIASKIGISEKTKRLAT 240
Query: 254 HIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELL 313
+ +NP+S++A A+Y++C+ + +Q ++ + +TEVT+R YK LL
Sbjct: 241 ELLRKAEESELTAGKNPMSLAATALYISCRKTGENYSQRDLAEAASVTEVTIRNRYKGLL 300
Query: 314 E 314
E
Sbjct: 301 E 301
>gi|300711996|ref|YP_003737810.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|448295686|ref|ZP_21485750.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299125679|gb|ADJ16018.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445583785|gb|ELY38114.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
Length = 320
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +ATA++ A R+A
Sbjct: 131 NLKQALGEIDRMASALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATASVYAAARQAG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 191 VPRSLDEISEVSRVEKSEVARTYRYVVRELGLEVQPADPES---YVPRFASGLELSDEAE 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 248 HRARQLLRNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 307
Query: 310 KELLE 314
ELLE
Sbjct: 308 HELLE 312
>gi|435846952|ref|YP_007309202.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433673220|gb|AGB37412.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + EI + + + L L QP + S ++PRF + L+L+ +
Sbjct: 197 TPRSLDEISAVSRVGKDEIARTYRYVIRELGLEVQPADPES---YVPRFASELELSDETE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R Y
Sbjct: 254 RRARSLLQTAKEEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|119719600|ref|YP_920095.1| transcription initiation factor IIB [Thermofilum pendens Hrk 5]
gi|119524720|gb|ABL78092.1| Transcription initiation factor IIB (TFIIB) [Thermofilum pendens
Hrk 5]
Length = 327
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 149/325 (45%), Gaps = 32/325 (9%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
++CP C + R +T I C +CG V++ER+ +
Sbjct: 27 LRCPNCGST--RLIYDATRGEII-CANCGYVMSEREIDQGAEWR---------------A 68
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELL--- 117
P+ ++ P I+ + SLV + +G+ L + E+L
Sbjct: 69 FTPEEREKRSRVGAP------ISRYGVESLVTDIDW--GGRDAAGREISLRKRIEMLRLR 120
Query: 118 SSSTTSTSSSVMMDNL-RAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEA 176
+ + S M NL +A +++ + + LGL + D A +++ + +R RS+E+
Sbjct: 121 KWQVRARAQSSMERNLAQAVIELERLGAQLGLPKAVLDRALDIYKSALDSNLVRGRSIES 180
Query: 177 LATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMP 236
+ AA+ A RE + PRTL EI++ +K++ + ++L L P+ + A +P
Sbjct: 181 VMAAAVYAACREMRLPRTLDEIALYTRAGRKDVARCYRLLLREASLKVPL--PNAADFVP 238
Query: 237 RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK 296
R +LL+L+ + A I + N ++P ++AAAIY+A + +TQ E+ +
Sbjct: 239 RIGSLLRLSGATIKRAMEIIDQARNAGLTAGKDPAGLAAAAIYIAALQNGEMRTQKEVAR 298
Query: 297 VTGLTEVTLRKVYKELLENWDDLLP 321
+TEVT+R YKEL++ D LP
Sbjct: 299 AAKVTEVTVRNRYKELVKKLDIKLP 323
>gi|291333532|gb|ADD93228.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C54]
Length = 311
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 105/197 (53%), Gaps = 13/197 (6%)
Query: 118 SSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEAL 177
+S + + +V M ++A VA+ L L I + A ++R L R++E +
Sbjct: 116 ASKSAERNMAVAMREMQA------VATNLKLPRRIQETAAFIYRRAIQEQSLSGRAIEMV 169
Query: 178 ATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQ--PINSNSIAVHM 235
A AAL A R+ PRTL EIS + +KEI + +++ +AL++ P+ + ++
Sbjct: 170 ACAALYAACRQEGVPRTLTEISRHSRYSRKEISRTYQVMVKALKMHSMPPLPED----YL 225
Query: 236 PRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC 295
PR C+ L+L+ + A + + T PIS++AAA+Y+A + ++R+ Q ++
Sbjct: 226 PRICSKLELSPKVEGAARDLLRAAQDVPL-TNSVPISLAAAAVYIASIVNNERRKQKDVA 284
Query: 296 KVTGLTEVTLRKVYKEL 312
+ LTEVT+R YKE+
Sbjct: 285 RAADLTEVTIRSRYKEM 301
>gi|335436571|ref|ZP_08559364.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897534|gb|EGM35665.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 323
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 107/190 (56%), Gaps = 5/190 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 134 NLKQALGEIDRMASALGLPENVRETASVIYRRALDENLLPGRSIEGVSTASLYAAARQAG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI + V + E+ + + + L L +P + S ++PRF + L L++ A+
Sbjct: 194 NPRSLDEIDNVSRVEKDEVARTYRYVVRELNLEVKPADPTS---YVPRFASDLDLSEEAE 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + + ++P+ ++AAAIY A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 251 RHARDLLENAKREGVHSGKSPVGLAAAAIYAASLLANEKVTQNEVSEVANISEVTIRNRY 310
Query: 310 KELLENWDDL 319
ELLE D+
Sbjct: 311 HELLEAKQDI 320
>gi|118576516|ref|YP_876259.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195037|gb|ABK77955.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 328
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 121/257 (47%), Gaps = 6/257 (2%)
Query: 54 LVTSDLPSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQ--LAELE 111
++T L + ++ DE +G T+ + + S + ++ +G+ A +
Sbjct: 63 VITDKLEDMGAEWRSFSGDETSRSRSGAGTSLAMHDMGLSTVIGSANKDTTGKPLSASMR 122
Query: 112 RTFELLSSSTTSTSSSVMMD-NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
+ E L + + T + D NLR L +D + L L + + A ++R +
Sbjct: 123 TSIERLRTWDSRTQAHSSADRNLRQALNEMDKMKDKLALADAVIEKAAYIYRKAMEKKLV 182
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+ L A L A R + PRTL +I+ N+ +K++ + +++ L+L P+
Sbjct: 183 RGRSIHGLVAACLYAACRNTETPRTLDDIAKGINIRRKDVARCYRLIFRELELKMPVVDP 242
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
V R ++ +LN+ + A I + ++P+ I+AAA+YLAC + K
Sbjct: 243 VKGV--SRIASIAELNERTKRRAITILDQAKKLGMVAGKDPMGIAAAALYLACIGSGEAK 300
Query: 290 TQAEICKVTGLTEVTLR 306
+Q +I +G+TEVT+R
Sbjct: 301 SQKDISLASGVTEVTIR 317
>gi|383625175|ref|ZP_09949581.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 329
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 141 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 200
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + EI + + + L L QP + S ++PRF + L+L +
Sbjct: 201 TPRSLDEISAVSRVEKDEIARTYRYVVRELGLEVQPADPES---YVPRFASDLELPDETE 257
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + ++ + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R Y
Sbjct: 258 RRARRLLKTAKDEGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRY 317
Query: 310 KELLE 314
ELLE
Sbjct: 318 HELLE 322
>gi|213404006|ref|XP_002172775.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
gi|212000822|gb|EEB06482.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
Length = 339
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 15/195 (7%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L AY +I + + L I D A QLF+ L+ +S +++ A + A R+ + P
Sbjct: 119 LTAYKEISAMCDAISLPKVIADTAKQLFKRVDDHKALKGKSSQSIIAACIYIACRQGKVP 178
Query: 193 RTLQEISIAANVPQKEIGKYIKIL------GEALQLS-------QPINSNSIAVH--MPR 237
RT EI NV +KEIG+ K L G AL S + I ++S + M R
Sbjct: 179 RTFMEICTLTNVAKKEIGRVYKTLQRMLTEGGALHNSVDAFKGQEYIQNSSTSAEDLMVR 238
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC LQL Q+ A + + R+PISI+A+ IY+ L KT EI +V
Sbjct: 239 FCNRLQLPTFVQLAAAELARRAGQEGTLAGRSPISIAASGIYMISSLMGYPKTPKEISEV 298
Query: 298 TGLTEVTLRKVYKEL 312
TG+++ T+R YK L
Sbjct: 299 TGVSDSTIRIAYKLL 313
>gi|448494476|ref|ZP_21609463.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445689311|gb|ELZ41551.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 336
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + ++GL + D A LF + LR RS+E A A + A R A RT
Sbjct: 158 AYTEIRRLTGVMGLPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVART 217
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ E+ A + E + L L PI + A ++PRF + L + + + A
Sbjct: 218 VGEVCAEAKATEDEHRAAFDAMNRELGL--PIAPSGPAEYLPRFASDLDCDPAVERRAGE 275
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ + + + RNP+ ++AA +Y A + D TQ E V +T VT+R+ Y +L E
Sbjct: 276 LADRAVKEGIANGRNPVGVAAACLYTAARELDAECTQQEAADVADVTPVTVRRTYVDLTE 335
>gi|448677609|ref|ZP_21688799.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448687989|ref|ZP_21693957.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445773284|gb|EMA24317.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779780|gb|EMA30696.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 322
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + + ++R L RS+E +AT+AL A R A
Sbjct: 135 NLKQALGEIDRMASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAG 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + E+ + + + L L QP + ++PRF + L L++ Q
Sbjct: 195 NPRSLDEMARVSRVEKMELTRTYRYIVRELSLEVQPADPEH---YLPRFISDLGLSEETQ 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + ++P+ I+AAA+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 252 RQARDLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRY 311
Query: 310 KELLENWD 317
KELLE D
Sbjct: 312 KELLEAED 319
>gi|448360606|ref|ZP_21549237.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
gi|445653219|gb|ELZ06091.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
Length = 271
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A L+R +R RS+E +AT+ L A R
Sbjct: 84 NLQFALSETDRMASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEG 143
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EIG+ + + + L L +P+N ++PRFC+ L L + Q
Sbjct: 144 IPRSLDEVAAVSRVNRMEIGRTYRYISQELGLEMEPVNPKK---YVPRFCSELDLPEEVQ 200
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY + L +++KTQ E+ V +TEVT+R Y
Sbjct: 201 AKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQVTEVTIRNRY 260
Query: 310 KE 311
+E
Sbjct: 261 QE 262
>gi|399576051|ref|ZP_10769808.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399238762|gb|EJN59689.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 288
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 93/207 (44%), Gaps = 7/207 (3%)
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
Q+A L R + SS + + A+ +I + S L L + DHA L R +
Sbjct: 86 QMARLRRQH-----NRARISSKRERNQVYAFTEIRRLVSRLSLPEQVRDHACSLVRSAQN 140
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQP 225
+R RS+E A A++ A R A RT+ E++ A E L L L P
Sbjct: 141 EDLVRGRSLEGFAAASVYAACRVAGVSRTVDEVTDVARADANEQQAAYDALNRELGL--P 198
Query: 226 INSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLE 285
+ ++PRF + L ++ S + A + E T RNP ++AA +Y A +
Sbjct: 199 VGPIDPVEYIPRFASKLDVDASVERRARTLAEEAREAGIATGRNPSGVAAACLYTAARGT 258
Query: 286 DKRKTQAEICKVTGLTEVTLRKVYKEL 312
D + TQ E V G+T VTLR Y +L
Sbjct: 259 DGQLTQRETADVAGVTPVTLRNTYTDL 285
>gi|448348263|ref|ZP_21537115.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445643361|gb|ELY96413.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 271
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A L+R +R RS+E +AT+ L A R
Sbjct: 84 NLQFALSETDRMASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEG 143
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EIG+ + + + L L +P+N ++PRFC+ L L + Q
Sbjct: 144 IPRSLDEVAAVSRVNRMEIGRTYRYISQELGLEMEPVNPKK---YVPRFCSELDLPEEVQ 200
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY + L +++KTQ E+ V +TEVT+R Y
Sbjct: 201 AKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQVTEVTIRNRY 260
Query: 310 KE 311
+E
Sbjct: 261 QE 262
>gi|448321090|ref|ZP_21510571.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445604490|gb|ELY58438.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 324
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L+L+ +
Sbjct: 196 TPRSLDEIAAVSRVEKDEIARTYRYVIRELGLEVQPADPES---YVPRFASELELSDETE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R Y
Sbjct: 253 RRARQLLQTAKEEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRY 312
Query: 310 KELLE 314
ELLE
Sbjct: 313 HELLE 317
>gi|389860462|ref|YP_006362701.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
gi|388525365|gb|AFK50563.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
Length = 316
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 106/199 (53%), Gaps = 10/199 (5%)
Query: 120 STTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALAT 179
+ T SSV + +A ++ +A +L L + + A +++R +R RS+E++
Sbjct: 114 ARTRIQSSVDRNLAQALNELERIAELLNLPTHVREEAARIYRMAVEKGLVRGRSIESVIA 173
Query: 180 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS----QPINSNSIAVHM 235
AA+ A REA+ PR+L EI+ +P+KEI + ++L L + PI+ +
Sbjct: 174 AAVYVACREARVPRSLDEITKYTRIPRKEIARCYRLLLRELGIKVTAVDPID------FI 227
Query: 236 PRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC 295
PR L L+ AT I V NK ++P ++AAA+Y+A +++TQ E+
Sbjct: 228 PRIAHALGLSGEIIKNATEILNKVRNKGVTAGKDPAGLAAAAVYIAAITAGEKRTQKEVA 287
Query: 296 KVTGLTEVTLRKVYKELLE 314
V G+TEVT+R YKE+++
Sbjct: 288 HVAGVTEVTVRNRYKEIID 306
>gi|284165712|ref|YP_003403991.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284015367|gb|ADB61318.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 323
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 134 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 194 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R Y
Sbjct: 251 RMARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRY 310
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 311 KELLEASDTAAPA 323
>gi|448288563|ref|ZP_21479761.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445568948|gb|ELY23523.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 318
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 106/191 (55%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R+A
Sbjct: 130 NLKQALGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E+ + V + EI + + + L L +P + ++PRF + L LN ++
Sbjct: 190 TPRSLDELETVSRVDKDEISRTYRYVVRELNLEIEPADPEQ---YVPRFASELGLNDESE 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAAIY A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 247 RHARQLLRTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSEVANISEVTIRNRY 306
Query: 310 KELLENWDDLL 320
ELLE + L+
Sbjct: 307 HELLEAEEQLM 317
>gi|448361954|ref|ZP_21550567.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445649634|gb|ELZ02571.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 329
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 140 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAG 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 200 TPRSLDEISAVSRVDKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 256
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AA +Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 257 RMARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 316
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 317 KELLEASDTAAPA 329
>gi|448370421|ref|ZP_21556593.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445649168|gb|ELZ02110.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 323
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A L+R +R RS+E +AT+ L A R
Sbjct: 136 NLQFALSETDRMASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EIG+ + + + L L +P+N ++PRFC+ L L + Q
Sbjct: 196 IPRSLDEVAAVSRVNRMEIGRTYRYISQELGLEMEPVNPKK---YVPRFCSELDLPEEVQ 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY + L +++KTQ E+ V +TEVT+R Y
Sbjct: 253 AKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQVTEVTIRNRY 312
Query: 310 KE 311
+E
Sbjct: 313 QE 314
>gi|313126970|ref|YP_004037240.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293335|gb|ADQ67795.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 106/191 (55%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R+A
Sbjct: 139 NLKQALGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E+ + V + EI + + + L L +P + ++PRF + L LN ++
Sbjct: 199 TPRSLDELETVSRVDKDEISRTYRYVVRELNLEIEPADPEQ---YVPRFASELGLNDESE 255
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAAIY A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 256 RHARQLLRTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSEVANISEVTIRNRY 315
Query: 310 KELLENWDDLL 320
ELLE + L+
Sbjct: 316 HELLEAEEQLM 326
>gi|269862647|ref|XP_002650920.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065412|gb|EED43136.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 310
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)
Query: 152 ICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211
I D A +F+D S L+ +++E A + A + PRT QEIS+ VP++EIGK
Sbjct: 130 IIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFQEISVITVVPKREIGK 189
Query: 212 YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPI 271
K++ + + + +++V L LN Q A +I + V + R+P
Sbjct: 190 CYKLISKEMTRPESWAPQTLSVDFAP----LNLNAKIQNTARYIAKKVQDIGCLAGRSPD 245
Query: 272 SISAAAIYLA-CQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAV 328
SI++A IYL C D Q +I VT +T+VT+R YK+LL +++P +T AV
Sbjct: 246 SIASAIIYLTLCLYPDFLFLQKDIQYVTNVTDVTIRNTYKDLLPYKKEIIPEEFTTAV 303
>gi|289580210|ref|YP_003478676.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281448|ref|ZP_21472754.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289529763|gb|ADD04114.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445578870|gb|ELY33270.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 329
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 140 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAG 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 200 TPRSLDEISAVSRVDKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 256
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AA +Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 257 RMARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 316
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 317 KELLEASDTAAPA 329
>gi|237838491|ref|XP_002368543.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|211966207|gb|EEB01403.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|221484187|gb|EEE22483.1| transcription initiation factor IIB, putative [Toxoplasma gondii
GT1]
gi|221505834|gb|EEE31479.1| transcription initiation factor IIB, putative [Toxoplasma gondii
VEG]
Length = 464
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 145/351 (41%), Gaps = 45/351 (12%)
Query: 3 CPYCSAAQGRCAT----TSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSD 58
CPYC A+ T +S+G + C CG ++ E+ + +
Sbjct: 111 CPYCGPARNGAQTIVFDSSSGDQL--CRECGLIVEEKVLSEEQEWR-------------N 155
Query: 59 LPSIPQPQQNDGVDEDPFQPTGFITAFSAW----SLVPSPLFLRSSHSFSGQLAELERTF 114
+ G D + A AW + + L S +G+ A +
Sbjct: 156 FSAEAASSSRGGADRNRVG-----DALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRL 210
Query: 115 ELLSSSTTSTSSSVMMDNLR----AYLQIIDVASILGLDYDICDHAFQLFRDCC-SATCL 169
+ L + TS S + R A+ I + L ++ + A ++ +D L
Sbjct: 211 QQLHEAATSGLGSGVGSGDRQLKVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGVQL 270
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAAN-VPQKEIGKYIKILGEALQLSQPINS 228
R RS A A REA RT++E+ + + +KE+GK I + + L +NS
Sbjct: 271 RTRSNTTTMLAITYLACREAGVTRTVKELVVYDRAISEKELGKAINRIKKLLPQRGGVNS 330
Query: 229 NSIAVHM-PRFCTLLQLNKSAQVLATHIGE-----VVINKCFCTRRNPISISAAAIYLAC 282
A + PR+C+ LQL+ +A H+ + ++ + R P S++AAAI+L
Sbjct: 331 AESATQLLPRYCSRLQLSMHVADVAEHVAKRATQVIISSHRHVLARRPNSVAAAAIWLVV 390
Query: 283 QLEDKRKT-----QAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAV 328
+L + +EI VTG E TLR +YK++L+ + LLP + P V
Sbjct: 391 KLLNSSTNPNLPKASEIASVTGAGEHTLRSIYKDMLDVAEHLLPREFQPTV 441
>gi|448369498|ref|ZP_21556050.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445650673|gb|ELZ03589.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 329
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 140 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAG 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 200 TPRSLDEISAVSRVDKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 256
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AA +Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 257 RMARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 316
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 317 KELLEASDTAAPA 329
>gi|375083610|ref|ZP_09730629.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
gi|374741803|gb|EHR78222.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
Length = 306
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 10/185 (5%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+ S LGL +I + A L+R +R RS+E + +A L A R A PRTL EI
Sbjct: 128 MGSQLGLPRNIREIAAVLYRKAVINKLVRGRSIEGMVSACLYAACRIANAPRTLDEIEDV 187
Query: 202 ANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
+ V +KEIG+ + L L L + PI+ ++ RF L +++ + A I
Sbjct: 188 SKVDKKEIGRSYRYLARELNLRLKPTSPID------YVIRFGDQLGISEKTKRRAVKILN 241
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
I K + + P I+AAAIY+A LE ++ TQ E+ +V +TEVT+R YKEL++ +
Sbjct: 242 QAIEKGLTSGKGPTGIAAAAIYIASLLEGEKMTQREVAEVARVTEVTVRNRYKELVDKLN 301
Query: 318 DLLPS 322
+P+
Sbjct: 302 IRIPT 306
>gi|448352869|ref|ZP_21541649.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445641511|gb|ELY94588.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 329
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 140 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAG 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 200 TPRSLDEISAVSRVDKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 256
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AA +Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 257 RMARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 316
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 317 KELLEASDTAAPA 329
>gi|290559596|gb|EFD92924.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 307
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 152 ICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211
I + A +++R+ + +R RS+E++ AL A R+ P TL EIS V +KE+GK
Sbjct: 135 IQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISDTFEVERKEVGK 194
Query: 212 YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPI 271
++L +L I S + ++ +F + L+++ A + + +K + + P+
Sbjct: 195 AYRLL--CRELGIKILPTSPSDYIYKFASELKVSNKTVSDAVKLLKEAEDKGLTSGKGPM 252
Query: 272 SISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
I+AA +Y++ + ++KTQ + K G+TEVT+R YKEL +
Sbjct: 253 GIAAAVLYVSTLINKEKKTQRDAAKAAGITEVTIRNRYKELYQ 295
>gi|300708774|ref|XP_002996560.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
gi|239605871|gb|EEQ82889.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
Length = 333
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 4/173 (2%)
Query: 152 ICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211
+ D A +F+ L+ +++E + A + A R PRT +E+S+ +V +KEIGK
Sbjct: 151 VIDRACLIFKIVDDKKLLKGKNIEGVVGACIYIACRLENCPRTFKEVSLITSVQKKEIGK 210
Query: 212 YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPI 271
K++ ++ +++ I + RFC+ L+LN Q LA I V ++P
Sbjct: 211 SFKLISPHVENLTVVSTKDI---VARFCSDLRLNIKIQRLAFAISAKVQEAGILAGKSPD 267
Query: 272 SISAAAIYLACQLE-DKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSN 323
SI+AA IY+ L + RK Q +I VT +TEVT++ YKEL + ++P++
Sbjct: 268 SIAAAIIYMVTYLVPEGRKVQKDIQYVTNVTEVTIKNTYKELAIFKNVIIPTD 320
>gi|340345821|ref|ZP_08668953.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520962|gb|EGP94685.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 303
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 3/184 (1%)
Query: 132 NLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
N R A+ ++ + + L L + + ++R +R RS+ L A+L A R +
Sbjct: 118 NFRQAFSELDRLKTKLALSDAVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTE 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL ++S N+ +K+I + ++L L L P+ N I + R ++ L++ +
Sbjct: 178 TPRTLTDVSNGINIKRKDIARCYRLLLRELDLKMPV-VNPIKC-VSRISSIAGLSEKTKR 235
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I + ++P+ ++AAA+YL+C + + KTQ +I G+TEVT+R YK
Sbjct: 236 KAVEILDQAAKIELSAGKDPMGLAAAALYLSCVINGENKTQKDIAVSAGVTEVTIRNRYK 295
Query: 311 ELLE 314
L E
Sbjct: 296 GLKE 299
>gi|448300614|ref|ZP_21490613.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445585433|gb|ELY39728.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 323
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L + R+A
Sbjct: 134 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQAS 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 194 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEQ---YVPRFVSDLDLSDETE 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R Y
Sbjct: 251 RMARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRY 310
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 311 KELLEASDTAAPA 323
>gi|448739810|ref|ZP_21721814.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445798476|gb|EMA48880.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 323
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 5/191 (2%)
Query: 132 NLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ A+ +I +AS LGL + + A ++R L RS+E +ATAA+ A R+A
Sbjct: 132 NLKQAFAEIERMASALGLPQSVRETAGVIYRRAIEDGLLPGRSIEGVATAAIHIASRQAN 191
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L ++ + V + I + + + L ++ P ++PRF + L L+ +
Sbjct: 192 IPRSLDTLAEVSRVEKLSITRTYRYVTRELDINLP--PADPLEYLPRFVSDLDLSDEVEH 249
Query: 251 LATHIGEVVINK--CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV 308
+ + E V + + +NP+ ++AAA+Y L +++ TQ + +V +++VT+R
Sbjct: 250 RSRELLETVSEDEPSYLSGKNPVGLAAAAVYAGSLLCNEKVTQVAVGEVADISQVTIRNR 309
Query: 309 YKELLENWDDL 319
Y ELLE DD+
Sbjct: 310 YTELLEFQDDV 320
>gi|300711217|ref|YP_003737031.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299124900|gb|ADJ15239.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 335
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 108/192 (56%), Gaps = 6/192 (3%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI + + + E+ + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 197 TPRSLDEIVQVSRIDRMELTRTYRYVIRELDLEVQPADPES---YVPRFASDLELSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + ++P+ ++AAA+Y A L +++ TQAE+ +V ++EVT+R Y
Sbjct: 254 HRARELLSNAKQSGIHSGKSPVGLAAAAVYAAALLTNEKVTQAEVSEVANISEVTIRNRY 313
Query: 310 KELLENWDDLLP 321
KELL+ DD P
Sbjct: 314 KELLQA-DDTSP 324
>gi|269986930|gb|EEZ93206.1| transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 307
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 2/161 (1%)
Query: 152 ICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211
I + A +++R+ + +R RS+E++ AL A R+ P TL EIS V +KE+GK
Sbjct: 135 IQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISETFEVERKEVGK 194
Query: 212 YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPI 271
++L +L I +S + ++ +F + L ++ A + + +K + + P+
Sbjct: 195 AYRLL--CRELGIKILPSSPSDYIYKFASELGVSNKTVSDAVKLLKEAEDKGLTSGKGPM 252
Query: 272 SISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
I+AA +Y+A + ++KTQ + K G+TEVT+R YKEL
Sbjct: 253 GIAAAVLYVATLINKEKKTQRDAAKAAGITEVTIRNRYKEL 293
>gi|448306111|ref|ZP_21496021.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445598749|gb|ELY52801.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 325
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 196 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEH---YVPRFISDLDLSDETE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AAA+Y A L +++ TQ ++ V ++EVT+R Y
Sbjct: 253 RMARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRY 312
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 313 KELLEASDTATPA 325
>gi|448419967|ref|ZP_21580777.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674135|gb|ELZ26680.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 348
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 105/187 (56%), Gaps = 3/187 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + + ++R L RS+E +ATA+L A R AQ
Sbjct: 150 NLKQALGEIDRMASALGLPDNVRETSSVIYRRALEDDLLPGRSIEGIATASLHAAARMAQ 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E++ + V + E + + + +LS I ++PRF + +++ K +
Sbjct: 210 VPRSLDEVARVSRVDEDEFERAYRYI--VRELSLEIKPADPVEYLPRFASDVEVPKETER 267
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + E + + ++P+ ++AAA+Y A QL ++ TQ ++ VT ++EVT+R Y+
Sbjct: 268 TARELLENAKRENVHSGKSPVGLAAAALYAAAQLTNEDVTQHQVSGVTDISEVTIRNRYQ 327
Query: 311 ELLENWD 317
ELLE WD
Sbjct: 328 ELLEAWD 334
>gi|448306378|ref|ZP_21496284.1| transcription initiation factor TFB [Natronorubrum bangense JCM
10635]
gi|445598233|gb|ELY52297.1| transcription initiation factor TFB [Natronorubrum bangense JCM
10635]
Length = 332
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 96/185 (51%), Gaps = 3/185 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + A ++R L RS+E +ATAAL A+R+
Sbjct: 139 NLKHALGEIDRMGSALGIPDATLETASVIYRRALEENLLPGRSIEGMATAALNAAVRQTG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR++ E++ + + E + + L L+L P+ ++PR+ + L++ +
Sbjct: 199 VPRSIDELATVSRIDYLEAARAYRYLVRELEL--PMAPPDPLEYLPRYASALEITAETER 256
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + E + + ++P+ ++AAAIY +L + TQ ++ +++VT+R Y+
Sbjct: 257 RAHDLLEGGMEAGLHSGKHPVGLAAAAIYAGSRLTGETLTQDDVSDAIDVSKVTIRNRYQ 316
Query: 311 ELLEN 315
ELLE+
Sbjct: 317 ELLEH 321
>gi|448303109|ref|ZP_21493059.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594116|gb|ELY48283.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 323
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 134 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 194 TPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AAA+Y A L +++ TQ ++ V ++EVT+R Y
Sbjct: 251 RMARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRY 310
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 311 KELLEASDTAAPA 323
>gi|169770601|ref|XP_001819770.1| transcription initiation factor IIB [Aspergillus oryzae RIB40]
gi|238486960|ref|XP_002374718.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|83767629|dbj|BAE57768.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699597|gb|EED55936.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|391867301|gb|EIT76547.1| transcription initiation factor TFIIB [Aspergillus oryzae 3.042]
Length = 350
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 132/324 (40%), Gaps = 52/324 (16%)
Query: 19 GRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQP 78
G T CGSCG V+A+R+ H + + D Q ND DP +
Sbjct: 39 GSHETVCGSCGLVLADREIDMHSEWRTFSNDD---------------QNND----DPSR- 78
Query: 79 TGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ 138
+ S L L + + SG++ +L R SS + S L AY +
Sbjct: 79 ---VGDASNPLLNGDQLETQIASGGSGRVRDLYRAQNKQSSEKANKSL------LAAYKE 129
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I + + ++ D A LF+ A + +S + + + A R+ + PRT EI
Sbjct: 130 IGALCDGFSIQKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEI 189
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH---MP------------------- 236
V +KEIG+ K L E +Q + N+ V +P
Sbjct: 190 FAVTKVSRKEIGRIYKAL-EKFFTAQNLERNNAVVSNGGVPDPNDTYTATTSTKPSDLCN 248
Query: 237 RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK 296
RFC LL L +++ + + V R+P+SI AA IY+A L KT EI +
Sbjct: 249 RFCNLLDLPFQVTSVSSALSDRVTTMGDLAGRSPLSIVAACIYMASYLMGHGKTAKEISQ 308
Query: 297 VTGLTEVTLRKVYKELLENWDDLL 320
V +++ T+R YK+L + L+
Sbjct: 309 VAHVSDGTIRGAYKQLYAERERLI 332
>gi|448333191|ref|ZP_21522402.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
gi|445623529|gb|ELY76934.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
Length = 370
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 101/185 (54%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + + ++R L RS+E +ATA+L A R+A
Sbjct: 182 NLKQALGEIDRMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 241
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + EI + + + L L QP + S ++PRF + L L +
Sbjct: 242 TPRSLDEISAVSRVEKAEIARTYRYVVRELGLEVQPADPES---YVPRFASDLDLADETE 298
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAA+Y A L +++ TQ ++ V ++EVT+R Y
Sbjct: 299 RRAHDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRY 358
Query: 310 KELLE 314
KELLE
Sbjct: 359 KELLE 363
>gi|148508281|gb|ABQ76065.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 380
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID ++S L + + A ++R A L RS+E +ATA L A R
Sbjct: 191 NLKHALGEIDRMSSALDIHETTRETASMIYRRALDADLLPGRSIEGVATAVLYAASRIDG 250
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
R++ E++ + VP EI + + + L L P +N I ++ RF + ++ N +
Sbjct: 251 VARSIDELASVSRVPALEIKRTYRYIIRELDLQIP-PTNPIE-YIGRFASAIECNDETER 308
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + K + ++P+ I+A+A+Y A QL + R TQ+EI ++EVT+R Y+
Sbjct: 309 RARALTQQATEKGVHSGKHPVGIAASALYAAGQLCNDRLTQSEISNAADVSEVTIRNRYR 368
Query: 311 ELLE 314
E+LE
Sbjct: 369 EILE 372
>gi|110669282|ref|YP_659093.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627029|emb|CAJ53505.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 375
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID ++S L + + A ++R A L RS+E +ATA L A R
Sbjct: 186 NLKHALGEIDRMSSALDIHETTRETASMIYRRALDADLLPGRSIEGVATAVLYAASRIDG 245
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
R++ E++ + VP EI + + + L L P +N I ++ RF + ++ N +
Sbjct: 246 VARSIDELASVSRVPALEIKRTYRYIIRELDLQIP-PTNPIE-YIGRFASAIECNDETER 303
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + K + ++P+ I+A+A+Y A QL + R TQ+EI ++EVT+R Y+
Sbjct: 304 RARALTQQATEKGVHSGKHPVGIAASALYAAGQLCNDRLTQSEISNAADVSEVTIRNRYR 363
Query: 311 ELLE 314
E+LE
Sbjct: 364 EILE 367
>gi|354611426|ref|ZP_09029382.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196246|gb|EHB61748.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 330
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I ++S LGL ++ + A ++R + L RS+E +AT+AL A R+A
Sbjct: 140 NLKQALGEIERMSSALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATSALYAAARQAN 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E++ + V + EI + + + L L + A ++PRFC+ L L +
Sbjct: 200 TPRSLDEVANVSRVERDEIARTYRYVVRELGLE--VAPTDPASYVPRFCSELDLPDEVER 257
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + ++P+ ++AAA+Y A L ++R TQ+E+ V ++EVT+R Y
Sbjct: 258 RARELLTAAEDAGITSGKSPVGLAAAAVYAASLLTNERITQSEVSDVANISEVTIRNRYH 317
Query: 311 ELLE 314
E+LE
Sbjct: 318 EILE 321
>gi|448732733|ref|ZP_21715002.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445804263|gb|EMA54522.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 340
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 104/184 (56%), Gaps = 3/184 (1%)
Query: 132 NLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ A +I + S LG+ D+ + A ++R S L RS+E ++TAAL AIR+
Sbjct: 139 NLKQALAEIERMGSALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAAIRQMG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+++E+S + V + E + + + + L L I + ++PRF + L ++ +
Sbjct: 199 LPRSVEEVSAVSRVDEMEFKRAYRYINQELSLE--IGPPAPDQYLPRFASDLGVSDETEG 256
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + V+ + + ++P+ ++ AA+Y A L + R TQ E+ +V G++ VT+R Y+
Sbjct: 257 RARELIQTVMEEGAHSGKSPVGLAGAALYAAGILTNNRLTQDEVSEVVGVSTVTIRNRYQ 316
Query: 311 ELLE 314
ELLE
Sbjct: 317 ELLE 320
>gi|385803088|ref|YP_005839488.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728580|emb|CCC39735.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 101/184 (54%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 157 NLKQALGEVDRMASALGLPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAG 216
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + EI + + + L+L I ++PRF + L L+ A+
Sbjct: 217 TPRSLDEITNVSRVGRDEIARTYRYVVRELKLQ--IKPADPEQYVPRFASDLDLSDEAER 274
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + ++P+ ++AAA+Y A L +++ TQ E+ V ++EVT+R Y
Sbjct: 275 RARQLLRSAKEQGVHSGKSPVGLAAAAVYAASLLINEKVTQKEVSSVANISEVTIRNRYH 334
Query: 311 ELLE 314
ELLE
Sbjct: 335 ELLE 338
>gi|448411716|ref|ZP_21576072.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669650|gb|ELZ22258.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 324
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R L RS+E +AT+AL A R+A
Sbjct: 135 NLKQALGEIDRMASALGLPESVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQAG 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L +
Sbjct: 195 TPRSLDEIAAVSRVGKDEIARTYRYVVRELSLEIQPADPES---YVPRFVSDLDLPDEVE 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 252 RRARQLLGTAKEQGVHSGKSPVGLAAAAVYAASLLANEKVTQSEVSEVANISEVTIRNRY 311
Query: 310 KELLE 314
ELLE
Sbjct: 312 HELLE 316
>gi|448457245|ref|ZP_21595740.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445810826|gb|EMA60841.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 330
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 2/180 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + +L L + D A LF + LR RS+E A A + A R A RT
Sbjct: 152 AYTEIRRLTGVLELPDSVRDTACTLFDSAQDESLLRGRSLEGFAAACVYVACRTADVART 211
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
++EI A E + L L PI A ++PRF + L + + A
Sbjct: 212 VEEICGEAKATVDEHQAAFDAMNRELGL--PIAPTGPAEYLPRFASDLDCDAGVERRAGE 269
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ E + + RNP+ ++AA +Y A + D TQ E G+T VT+R+ Y +L E
Sbjct: 270 LAERAVEEGIANGRNPVGVAAACLYTAARELDAECTQQEAADAAGVTPVTVRRTYVDLTE 329
>gi|110667646|ref|YP_657457.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109625393|emb|CAJ51817.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 101/184 (54%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 157 NLKQALGEVDRMASALGLPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAG 216
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + EI + + + L+L I ++PRF + L L+ A+
Sbjct: 217 TPRSLDEITNVSRVGRDEIARTYRYVVRELKLQ--IKPADPEQYVPRFASDLDLSDEAER 274
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + ++P+ ++AAA+Y A L +++ TQ E+ V ++EVT+R Y
Sbjct: 275 RARQLLRSAKEQGVHSGKSPVGLAAAAVYAASLLINEKVTQKEVSSVANISEVTIRNRYH 334
Query: 311 ELLE 314
ELLE
Sbjct: 335 ELLE 338
>gi|433591588|ref|YP_007281084.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433306368|gb|AGB32180.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 341
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 101/185 (54%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + + ++R L RS+E +ATA+L A R+A
Sbjct: 153 NLKQALGEIDRMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 212
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + EI + + + L L QP + S ++PRF + L L +
Sbjct: 213 TPRSLDEISAVSRVEKAEIARTYRYVVRELGLEVQPADPES---YVPRFASDLDLADETE 269
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAA+Y A L +++ TQ ++ V ++EVT+R Y
Sbjct: 270 RRAHDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRY 329
Query: 310 KELLE 314
KELLE
Sbjct: 330 KELLE 334
>gi|448345333|ref|ZP_21534230.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445635331|gb|ELY88501.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 329
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 107/191 (56%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 141 NLKQALGEIDRMASALGLPDNVRETASVIYRRALEDELLPGRSIEGVATSSLYAAARQAG 200
Query: 191 EPRTLQEISIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNK 246
PR+L EIS + V + E+ + ++ LG +Q + P++ ++PRF + L L+
Sbjct: 201 TPRSLDEISAVSRVDKAEVARTYRYVVRELGLEVQPADPVS------YVPRFASDLDLSD 254
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
++ A + K + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R
Sbjct: 255 ETELRARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVASISEVTIR 314
Query: 307 KVYKELLENWD 317
Y ELLE D
Sbjct: 315 NRYHELLEAED 325
>gi|448732994|ref|ZP_21715240.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
gi|445803327|gb|EMA53624.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
Length = 323
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 4/187 (2%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A +I ++S LGL + + A ++R L RSVE ++TAAL A R+A PR+
Sbjct: 136 ALSEIERMSSALGLPKSVRETAGVIYRRALEENLLPGRSVEGVSTAALHIASRQANIPRS 195
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
L ++ + + + I + + + L+++ P ++PRF + L + + +
Sbjct: 196 LDTLTEVSRIGKLPITRTYQYVARELEINLP--PADPLEYLPRFVSALDRSDEVERRSRE 253
Query: 255 IGEVVINK--CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ E V + + +NP+ ++AAA+Y L +++ TQ + +V ++EVT+R YKEL
Sbjct: 254 LLETVSEDEPSYLSGKNPVGLAAAAVYAGSLLCNEKVTQKAVGEVADISEVTIRNRYKEL 313
Query: 313 LENWDDL 319
LE DD+
Sbjct: 314 LEFQDDV 320
>gi|344212646|ref|YP_004796966.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448631082|ref|ZP_21673537.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448671125|ref|ZP_21687117.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343784001|gb|AEM57978.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445755456|gb|EMA06846.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445766207|gb|EMA17341.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 321
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 108/190 (56%), Gaps = 5/190 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA++ A R+A
Sbjct: 132 NLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAG 191
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L +P + S ++PRF + L+L+ A+
Sbjct: 192 VPRSLDEITEVSRVEKSEIARTYRYVVRELSLEVRPADPES---YVPRFASSLELSDEAE 248
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 249 HRARQLLQNAKEQGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 308
Query: 310 KELLENWDDL 319
ELLE DL
Sbjct: 309 HELLEAEQDL 318
>gi|169863349|ref|XP_001838296.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|116500589|gb|EAU83484.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 340
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 119/286 (41%), Gaps = 28/286 (9%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CG+CG V+ +R + A D D PS G DP
Sbjct: 53 CGNCGLVLGDRVVDTRSEWRTFAND------EGDDPS------RVGAASDP--------- 91
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
L+ L + SF + + R EL +++ + SS + L A+ I +
Sbjct: 92 -----LMDGMEQLDTVISFRDGGSGISR--ELQRAASRAQSSRTERNLLTAFRDISNWCD 144
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
L I D A QL++ LR + +EA+ A + A R+A PR+ ++I +V
Sbjct: 145 QFSLPKTISDIAKQLYKRTDEEKLLRGKPLEAVIAACIFIACRQAHVPRSFKDICSLTHV 204
Query: 205 PQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCF 264
+K +G+ K+L A S+ + R+C L L + Q + +
Sbjct: 205 SKKMLGQCYKVLERAFTQVGAAPSSGPEGFLVRYCNYLDLPPNVQGICRDVIVAAREHGI 264
Query: 265 CTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
R+P+SI+ AIY C L +T EI +V G+TE T++ VY+
Sbjct: 265 ADSRSPLSIAGGAIYFCCMLLGHTRTLREISQVAGVTETTIQSVYR 310
>gi|55378612|ref|YP_136462.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448637427|ref|ZP_21675665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448652038|ref|ZP_21681051.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448681127|ref|ZP_21691273.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448684938|ref|ZP_21693025.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55231337|gb|AAV46756.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445764274|gb|EMA15429.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445768185|gb|EMA19272.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445769441|gb|EMA20515.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782869|gb|EMA33710.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 321
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 108/190 (56%), Gaps = 5/190 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA++ A R+A
Sbjct: 132 NLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAG 191
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L +P + S ++PRF + L+L+ A+
Sbjct: 192 VPRSLDEITEVSRVEKSEIARTYRYVVRELSLEVRPADPES---YVPRFASSLELSDEAE 248
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 249 HRARQLLQNAKEQGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 308
Query: 310 KELLENWDDL 319
ELLE DL
Sbjct: 309 HELLEAEQDL 318
>gi|154271255|ref|XP_001536481.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
gi|150409704|gb|EDN05148.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
Length = 352
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 139/340 (40%), Gaps = 53/340 (15%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSI 62
CP C T + +I CGSCG V+A+R+ H + + D
Sbjct: 26 CPECRETPPNLVTPDSHETI--CGSCGLVLADREIDQHSEWRTFSNDD------------ 71
Query: 63 PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLA-ELERTFELLSSST 121
Q ND DP + L + L + S+ G + EL R +SS
Sbjct: 72 ---QNND----DPSRVGDAANPL----LNGNQLETQISYGAGGSRSRELHRAQNKMSSEK 120
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
T+ + L AY +I + + ++ D A LF+ A + +S + +
Sbjct: 121 TNKAL------LAAYKEIGALCDGFNIPKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGC 174
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP--- 236
+ A R+ + PRT EI V +KEIG+ K L + Q + INS + +P
Sbjct: 175 IFIACRQCKVPRTFTEIFAVTRVTKKEIGRIYKALEKFFTAQNLERINSVVSSGGVPDPN 234
Query: 237 ----------------RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYL 280
RFC LL L +++ + + V + R+P+SI AA+IY+
Sbjct: 235 ETYTATTSTKPSDLCNRFCNLLDLPFQVTNVSSALADRVTSTGELAGRSPLSIVAASIYM 294
Query: 281 ACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
A L + KT EI V +++ T+R YK+L + L+
Sbjct: 295 ASFLMGQGKTAKEISSVAHVSDGTIRGAYKQLYAERERLI 334
>gi|67537516|ref|XP_662532.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|40741816|gb|EAA61006.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|259482202|tpe|CBF76459.1| TPA: transcription initiation protein (AFU_orthologue;
AFUA_3G10620) [Aspergillus nidulans FGSC A4]
Length = 351
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 134/328 (40%), Gaps = 52/328 (15%)
Query: 19 GRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQP 78
G T CGSCG V+A+R+ H + + D +D PS N ++ D +
Sbjct: 40 GSHETVCGSCGLVLADREIDMHSEWRTFSNDDQ----NNDDPSRVGDATNPLLNGDQLET 95
Query: 79 TGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ 138
+ + SG++ +L R SS + S L AY +
Sbjct: 96 -------------------QIASGGSGRVRDLYRAQNKQSSDKANKSL------LAAYKE 130
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I + G+ ++ D A LF+ A + +S + + + A R+ + PRT EI
Sbjct: 131 IGALCDGFGIPKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRKCKVPRTFTEI 190
Query: 199 SIAANVPQKEIGKYIKIL-----GEALQLSQPINSNSIAVHMP----------------- 236
V +KEIG+ K L + L+ + + SN V P
Sbjct: 191 FAVTKVSRKEIGRIYKALEKFFTSQNLERANAVVSNG-GVPDPNDTYTATTSTKPSDLCS 249
Query: 237 RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK 296
RFC LL L +++ + + V + R+P+SI AA IY+A L K+ EI +
Sbjct: 250 RFCNLLDLPFQVTSVSSALSDRVTTEGNLAGRSPLSIVAACIYMASYLMGHPKSAKEISQ 309
Query: 297 VTGLTEVTLRKVYKELLENWDDLLPSNY 324
V +++ T+R YK+L + L+ +
Sbjct: 310 VAHVSDGTIRGAYKQLYTERESLVDKEW 337
>gi|448476239|ref|ZP_21603403.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815788|gb|EMA65707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 334
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 2/178 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + LGL + D A LF + LR RS+E A A + A R A RT
Sbjct: 156 AYTEIRRLTGALGLPNSVRDTACTLFDSAQDESLLRGRSLEGFAAACVYVACRTAAVART 215
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ E+ AA + E + L L PI A ++PRF + L ++ + A
Sbjct: 216 VSEVCDAAKATEDEHRAAFDAMNRELGL--PIGPTGPAEYLPRFASDLDVDADIERRAGA 273
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ + + + RNP+ ++AA +Y A + D TQ E V +T VT+R+ Y +L
Sbjct: 274 LADRAVEEGIANGRNPVGVAAACLYTAARELDADCTQREAADVADVTPVTVRRTYVDL 331
>gi|402469405|gb|EJW04304.1| hypothetical protein EDEG_01428 [Edhazardia aedis USNM 41457]
Length = 305
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 13/196 (6%)
Query: 147 GLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQ 206
G+ I D A + + + ++ EA+A A L A + A+ PRT +EIS+ VP+
Sbjct: 118 GIAMVIQDRAKTILKTVIEKKLAKGKNAEAVAAACLHLACKHAKCPRTFKEISLMCQVPK 177
Query: 207 KEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCT 266
E+GK K++ + + +N I + RFC+ L L Q A I + +
Sbjct: 178 DEVGKCYKLIEKHFDKVEILNVEDI---IERFCSDLSLGIKEQKTALRISQRLKKHGISA 234
Query: 267 RRNPISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYT 325
++P S++AA IY+ L K +K +I VT ++EVT++ YK+LL+ Y
Sbjct: 235 GKSPASVAAAVIYMVAHLYSKDKKINKDIHYVTCVSEVTIKNTYKDLLQ---------YK 285
Query: 326 PAVPPEKAFPTTTITS 341
+ E FP I +
Sbjct: 286 YILITEDEFPKDIIDT 301
>gi|389847221|ref|YP_006349460.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448614833|ref|ZP_21663861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244527|gb|AFK19473.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445752920|gb|EMA04339.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 331
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +ATAAL A R A
Sbjct: 142 NLKQALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMAD 201
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E+ + V + E+ + + + L+L I ++PRF + L L+ A+
Sbjct: 202 TPRSLDELEKVSRVDKMELTRTYRYIVRELKLE--IKPADPEQYVPRFASELDLSDEAER 259
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+Y A L +++ TQ+E+ KV ++EVT+R YK
Sbjct: 260 QARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSKVADISEVTIRNRYK 319
Query: 311 ELLENWDDLL 320
ELLE D L
Sbjct: 320 ELLEVQDGSL 329
>gi|76801753|ref|YP_326761.1| transcription initiation factor TFB 2 [Natronomonas pharaonis DSM
2160]
gi|76557618|emb|CAI49201.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I +AS LGL ++ + A ++R L RS+E +ATA+L A ++A+
Sbjct: 133 NLKQALGEIERMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAAKQAR 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EI + + + L L QP + S ++PRF + ++L+ A+
Sbjct: 193 TPRSLDEVAKVSRVEKSEIARTYRYVVRELGLEIQPADPKS---YVPRFASDIELSDEAE 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 250 RRARQLLDNAQEAGVVSGKSPVGLAAAAVYAASLLCNEKVTQKEVSEVADISEVTIRNRY 309
Query: 310 KELLE 314
ELLE
Sbjct: 310 HELLE 314
>gi|448296681|ref|ZP_21486735.1| transcription factor TFIIB cyclin-like protein, partial
[Halalkalicoccus jeotgali B3]
gi|445580974|gb|ELY35340.1| transcription factor TFIIB cyclin-like protein, partial
[Halalkalicoccus jeotgali B3]
Length = 238
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 108/192 (56%), Gaps = 6/192 (3%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 40 NLKQALGEIDRMASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 99
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI + + + E+ + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 100 TPRSLDEIVQVSRIDRMELTRTYRYVIRELDLEVQPADPES---YVPRFASDLELSDEAE 156
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + ++P+ ++AAA+Y A L +++ TQAE+ +V ++EVT+R Y
Sbjct: 157 HRARELLSNAKQSGIHSGKSPVGLAAAAVYAAALLTNEKVTQAEVSEVANISEVTIRNRY 216
Query: 310 KELLENWDDLLP 321
KELL+ DD P
Sbjct: 217 KELLQA-DDTSP 227
>gi|448503020|ref|ZP_21612884.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693422|gb|ELZ45574.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 335
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R S L RS+E +ATA+L A R+
Sbjct: 147 NLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATASLYAAARQVG 206
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E + + V + E+ + + + L L QP + S ++PRF + L L++ +
Sbjct: 207 NPRSLDEFTAVSRVEKMELTRTYRYVIRELGLRVQPADPTS---YVPRFASRLDLSEETE 263
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + ++ + ++P+ ++AAA+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 264 RRARELLDDAASEGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSGVADVSEVTIRNRY 323
Query: 310 KELLE 314
KELL+
Sbjct: 324 KELLD 328
>gi|448358672|ref|ZP_21547349.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445645254|gb|ELY98260.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 329
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 140 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAG 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 200 TPRSLDEISAVSRVDKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 256
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + + + + ++P+ ++AA +Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 257 RMARELLDSARKEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRY 316
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 317 KELLEASDTAAPA 329
>gi|296242903|ref|YP_003650390.1| transcription initiation factor IIB [Thermosphaera aggregans DSM
11486]
gi|296095487|gb|ADG91438.1| Transcription initiation factor IIB (TFIIB) [Thermosphaera
aggregans DSM 11486]
Length = 306
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+ +L L + + A +++R+ +R RS+E++ AA+ A RE + PR+L E+S
Sbjct: 127 LGDLLNLPSHVKEEAARIYREAVEKGLVRGRSIESVIAAAVYVACRELKVPRSLDEVSRH 186
Query: 202 ANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVIN 261
+ +K+I + ++L L + + + ++PR L L + A + V
Sbjct: 187 TRIGRKDIARCYRLLLRELDIK--VGTTDPVDYVPRIVHALGLPGTVVKKAVELLNVARE 244
Query: 262 KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
++P ++AAA+Y+A +++TQ E+ V G+TEVT+R YKEL
Sbjct: 245 HGVTGGKDPAGLAAAAVYVASLELGEKRTQKEVAHVAGVTEVTVRNRYKEL 295
>gi|409079539|gb|EKM79900.1| hypothetical protein AGABI1DRAFT_113149 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192509|gb|EKV42445.1| hypothetical protein AGABI2DRAFT_195784 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 122/294 (41%), Gaps = 36/294 (12%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CGSCG V+ +R + A D D PS G DP
Sbjct: 53 CGSCGLVLGDRVVDTRSEWRTFANDE------GDDPS------RVGAASDP--------- 91
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
L+ L + SF + + R EL +++ S SS + L A+ I
Sbjct: 92 -----LMEGIEQLDTVISFRDGGSGIAR--ELQRAASRSQSSRSERNILTAFRDISSWCD 144
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
L I D A QL++ LR + ++A+ A + A R+A PRT +EI +V
Sbjct: 145 QFSLPKTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICTLTHV 204
Query: 205 PQKEIGKYIKILGEALQLSQPINSNSIAVHMP--------RFCTLLQLNKSAQVLATHIG 256
+K +G+ K L +A LS NS + P R+C L L + Q + + I
Sbjct: 205 SKKVLGQCYKALEQAFNLSPGATHNSNSSSTPTGPENLLVRYCNHLDLPANVQTICSDII 264
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
R+P+SI+ AIY C L K K+ +I V G++E T++ VY+
Sbjct: 265 VTARKYGIADGRSPVSIAGGAIYFTCLLLGKSKSVRDISAVAGVSEGTIKLVYR 318
>gi|225556484|gb|EEH04772.1| transcription initiation protein [Ajellomyces capsulatus G186AR]
Length = 352
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 139/340 (40%), Gaps = 53/340 (15%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSI 62
CP C T + +I CGSCG V+A+R+ H + + D
Sbjct: 26 CPECRETPPNLVTPDSHETI--CGSCGLVLADREIDQHSEWRTFSNDD------------ 71
Query: 63 PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLA-ELERTFELLSSST 121
Q ND DP + L + L + S+ G + EL R +SS
Sbjct: 72 ---QNND----DPSRVGDAANPL----LNGNQLETQISYGAGGSRSRELHRAQNKMSSEK 120
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
T+ + L AY +I + + ++ D A LF+ A + +S + +
Sbjct: 121 TNKAL------LAAYKEIGALCDGFNIPKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGC 174
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP--- 236
+ A R+ + PRT EI V +KEIG+ K L + Q + INS + +P
Sbjct: 175 IFIACRQCKVPRTFTEIFAVTRVTKKEIGRIYKALEKFFTAQNLERINSVVSSGGVPDPN 234
Query: 237 ----------------RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYL 280
RFC LL L +++ + + V + R+P+SI AA+IY+
Sbjct: 235 ETYTATTSTKPSDLCNRFCNLLDLPFQVTNVSSALADRVTSTGELAGRSPLSIVAASIYM 294
Query: 281 ACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
A L + KT EI V +++ T+R YK+L + L+
Sbjct: 295 ASFLMGQGKTAKEISSVAHVSDGTIRGAYKQLYAERERLV 334
>gi|240273589|gb|EER37109.1| transcription initiation protein [Ajellomyces capsulatus H143]
gi|325087490|gb|EGC40800.1| transcription initiation protein [Ajellomyces capsulatus H88]
Length = 352
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 139/340 (40%), Gaps = 53/340 (15%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSI 62
CP C T + +I CGSCG V+A+R+ H + + D
Sbjct: 26 CPECRETPPNLVTPDSHETI--CGSCGLVLADREIDQHSEWRTFSNDD------------ 71
Query: 63 PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLA-ELERTFELLSSST 121
Q ND DP + L + L + S+ G + EL R +SS
Sbjct: 72 ---QNND----DPSRVGDAANPL----LNGNQLETQISYGAGGSRSRELHRAQNKMSSEK 120
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
T+ + L AY +I + + ++ D A LF+ A + +S + +
Sbjct: 121 TNKAL------LAAYKEIGALCDGFNIPKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGC 174
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP--- 236
+ A R+ + PRT EI V +KEIG+ K L + Q + INS + +P
Sbjct: 175 IFIACRQCKVPRTFTEIFAVTRVTKKEIGRIYKALEKFFTAQNLERINSVVSSGGVPDPN 234
Query: 237 ----------------RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYL 280
RFC LL L +++ + + V + R+P+SI AA+IY+
Sbjct: 235 ETYTATTSTKPSDLCNRFCNLLDLPFQVTNVSSALADRVTSTGELAGRSPLSIVAASIYM 294
Query: 281 ACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
A L + KT EI V +++ T+R YK+L + L+
Sbjct: 295 ASFLMGQGKTAKEISSVAHVSDGTIRGAYKQLYAERERLV 334
>gi|448532924|ref|ZP_21621344.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445706158|gb|ELZ58043.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 339
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 2/180 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + +L L + D A LF + LR RS+E A A + A R A RT
Sbjct: 161 AYTEIRRLTGVLELPDSVRDTACSLFDSAQEESLLRGRSLEGFAAACVYVACRTADVART 220
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ E+ A + E + L L PI + ++PRF + L + + + A
Sbjct: 221 VGEVCDEAKATEDEHQAAFDAMNRELGL--PIAPAGPSEYLPRFASDLGCDPAVERRAGE 278
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ + + + RNP+ ++AA +Y A + D TQ E V G+T VT+R+ Y +L E
Sbjct: 279 LADRAVEEGIANGRNPVGVAAACLYTAARELDAEYTQQEAADVAGVTPVTVRRTYVDLTE 338
>gi|258563760|ref|XP_002582625.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
gi|237908132|gb|EEP82533.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
Length = 353
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 139/340 (40%), Gaps = 53/340 (15%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSI 62
CP C T + +I CGSCG V+A+R+ H + + D
Sbjct: 27 CPECKENPPNLRTPDSHETI--CGSCGLVLADREIDQHSEWRTFSNDD------------ 72
Query: 63 PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSG-QLAELERTFELLSSST 121
Q ND DP + L + L + S+ G + EL R +SS
Sbjct: 73 ---QNND----DPSRVGDAANPL----LNGNQLETQISYGQGGAKTRELHRAQNKMSSEK 121
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
T+ + L AY +I + + ++ D A LF+ A + +S + +
Sbjct: 122 TNRAL------LAAYKEIGALCDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGC 175
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP--- 236
+ A R+ + PRT EI V +KEIG+ K L + Q + INS + +P
Sbjct: 176 IFIACRQCKVPRTFTEIFALTRVSKKEIGRIYKTLEKFFTAQNMERINSVVSSGGVPDPN 235
Query: 237 ----------------RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYL 280
RFC LL L +++ + + V + R+P+SI AA+IY+
Sbjct: 236 ETYTATTSTKPSDLCSRFCNLLDLPFQVTTVSSALADRVTSMGDLAGRSPLSIVAASIYM 295
Query: 281 ACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
A L + K+ EI V +++ T+R YK+L + L+
Sbjct: 296 ASFLMGQGKSAKEISAVAHVSDGTIRGAYKQLYAERERLI 335
>gi|448602605|ref|ZP_21656540.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625071|ref|ZP_21670838.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445746957|gb|ELZ98414.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445748833|gb|EMA00279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 318
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R A
Sbjct: 129 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAD 188
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + EI + + + L+L I ++PRF + L L+ ++
Sbjct: 189 TPRSLDEITSVSRVEKDEIARTYRYVVRELKLE--IKPADPEQYVPRFASDLGLSDESER 246
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 247 RARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYH 306
Query: 311 ELLE 314
ELLE
Sbjct: 307 ELLE 310
>gi|292655211|ref|YP_003535108.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448596702|ref|ZP_21653840.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371352|gb|ADE03579.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445740583|gb|ELZ92088.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R A
Sbjct: 143 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAG 202
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + EI + + + +LS I ++PRF + L L+ ++
Sbjct: 203 TPRSLDEITSVSRVEKDEIARTYRYV--VRELSLEIKPADPEQYVPRFASDLGLSDESER 260
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 261 RARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYH 320
Query: 311 ELLE 314
ELLE
Sbjct: 321 ELLE 324
>gi|409096766|ref|ZP_11216790.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 303
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 100/188 (53%), Gaps = 11/188 (5%)
Query: 132 NLRAYLQIIDVASI-LGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D ++ +GL + + A L+R +R RS+E + +AAL A R
Sbjct: 114 NLAFALSELDRMAVQMGLPKRVKEQAAVLYRKAVMKKLIRGRSIEGMVSAALYAACRMEG 173
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++ RF L ++
Sbjct: 174 IPRTLDEIARFSKVTKKEIGRSYRFMARGLGLNLLPTSPID------YVDRFGDALGVSA 227
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + I + + P ++AAA+YLA LE ++KTQ E+ +V +TEVT+R
Sbjct: 228 RTKKRAREILQEAIRVGITSGKGPTGLAAAALYLASLLEGEKKTQREVAEVANVTEVTVR 287
Query: 307 KVYKELLE 314
YKEL+E
Sbjct: 288 NRYKELVE 295
>gi|448571794|ref|ZP_21639968.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445721761|gb|ELZ73427.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 318
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R A
Sbjct: 129 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAG 188
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + EI + + + +LS I ++PRF + L L+ ++
Sbjct: 189 TPRSLDEITSVSRVEKDEIARTYRYV--VRELSLEIKPADPEQYVPRFASELGLSDESER 246
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 247 RARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYH 306
Query: 311 ELLE 314
ELLE
Sbjct: 307 ELLE 310
>gi|448451292|ref|ZP_21592775.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445810726|gb|EMA60742.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 343
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 2/181 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + +L L + D A LF + LR RS+E A A + A R A RT
Sbjct: 165 AYTEIRRLTGVLELPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVART 224
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ E+ A + E + L L PI + A ++PRF + L + + + A
Sbjct: 225 VGEVCAEAKATEDEHRAAFDAMNRELGL--PIAPSGPAEYLPRFASDLGCDPAVERRAGE 282
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ E + + RNP+ ++AA +Y A + D TQ E V +T VT+R+ Y +L E
Sbjct: 283 LAERAVEEGIANGRNPVGVAAACLYTAARELDAECTQQEAADVADVTPVTVRRTYVDLTE 342
Query: 315 N 315
Sbjct: 343 E 343
>gi|170091576|ref|XP_001877010.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648503|gb|EDR12746.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 349
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 121/295 (41%), Gaps = 38/295 (12%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CG+CG V+ +R + A D D PS G DP
Sbjct: 53 CGNCGLVLGDRIVDTRSEWRTFANDE------GDDPS------RVGAASDPL-------- 92
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
+ + + R S G EL+R S S S S +M R D S
Sbjct: 93 MEGMEQLDTVISFRDGGS--GIARELQRA---ASRSQNSRSERNIMTAFRDIGSWCDQFS 147
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
L I D A QL++ LR + +EA+ A + A R+A PRT +EI +V
Sbjct: 148 ---LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICDLTHV 204
Query: 205 PQKEIGKYIKILGEALQLSQPINSNSIAVHMP---------RFCTLLQLNKSAQVLATHI 255
+K +G+ K L +A L+ P S + A + P R+C L L + Q + + I
Sbjct: 205 SKKILGQCYKALEQAFNLT-PGASAAHASNNPATGPENLLVRYCNHLDLPPNVQSICSDI 263
Query: 256 GEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
R+P+SI+ AIY C L K K+ +I V G++E T+R VY+
Sbjct: 264 IVAARKHGIADGRSPVSIAGGAIYFTCYLLGKNKSPRDISAVAGVSEGTIRLVYR 318
>gi|384485742|gb|EIE77922.1| hypothetical protein RO3G_02626 [Rhizopus delemar RA 99-880]
Length = 340
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 96/192 (50%), Gaps = 4/192 (2%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++AY +I + + L + D A QL++ LR +S +A+ A + A R+ +
Sbjct: 133 VQAYKEIGAMCDSISLSKIVSDTAKQLYKRVEDEKLLRGKSSDAIIAACIFIACRQEKVG 192
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPI-NSNSIAVHMPRFCTLLQLNKSAQVL 251
RT +EI VP+KEIG+ K L LQ + I NS + M RFC+ LQL Q
Sbjct: 193 RTFREICALTRVPKKEIGRCCKSLQLKLQTNTTIMNSEDL---MLRFCSNLQLANYVQKA 249
Query: 252 ATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 311
+ + V ++PIS++AA IYL L + K EI V G++EVT++ YK
Sbjct: 250 GIDLVKRVKELGTLAGKSPISVAAACIYLVSYLYRQPKATREIAHVAGVSEVTIKTAYKT 309
Query: 312 LLENWDDLLPSN 323
L + LL N
Sbjct: 310 LYAEKESLLDIN 321
>gi|340344812|ref|ZP_08667944.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519953|gb|EGP93676.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 309
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 3/189 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L ++ + L L + + A ++R +R RS+ AL +AL A R+ +
Sbjct: 123 NLRQALSELSRLKDKLSLSDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTE 182
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL+++S A N+ +K+I + ++L L L P+ V R + L +++ +
Sbjct: 183 TPRTLKDVSDAGNIKKKDIARCYRLLHRELDLKMPVVDPIQCV--ARIASKLGISEKTKR 240
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+YL+C + TQ +I + +TEVT+R YK
Sbjct: 241 FAVKVLKTAQEHEESAGKDPMGLAAAALYLSCVNNCENMTQRDIAEAASVTEVTIRNRYK 300
Query: 311 ELLENWDDL 319
L + DL
Sbjct: 301 GLRLDQTDL 309
>gi|448561557|ref|ZP_21634841.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445720739|gb|ELZ72411.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 318
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R A
Sbjct: 129 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAD 188
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + EI + + + L+L I ++PRF + L L+ ++
Sbjct: 189 TPRSLDEITSVSRVEKDEIARTYRYVVRELKLE--IKPADPEQYVPRFASELGLSDESER 246
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 247 RARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYH 306
Query: 311 ELLE 314
ELLE
Sbjct: 307 ELLE 310
>gi|305663777|ref|YP_003860065.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
gi|304378346|gb|ADM28185.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
Length = 315
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 6/215 (2%)
Query: 104 SGQLAELERTFELLS----SSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQL 159
+G+ +L+R EL+ S T S++ + ++A ++ +A L L I + A +
Sbjct: 90 AGRRLDLKRRLELIRIRKWHSRTRIQSTIDRNIVQAMNELERIADQLNLPRVIVEEATMI 149
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R +R R++E++ AAL A R PRTL EIS +KE+ + ++L
Sbjct: 150 YRRAVERELVRGRAIESMVAAALYAACRIHGIPRTLDEISKYTKSGRKEVARCYRLLVRE 209
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L L PI A + R ++L L+ + A I + R+P I+AAA+Y
Sbjct: 210 LSLRIPIVDA--AEYAQRIASMLGLSGATVKTAIDIIRRARDMGVTAGRDPAGIAAAAVY 267
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+A L D+R+TQ E+ G+TEVT+R YKEL++
Sbjct: 268 IAALLNDERRTQKEVASAAGVTEVTVRNRYKELIK 302
>gi|148508035|gb|ABQ75833.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 331
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +ATAAL + R+A
Sbjct: 142 NLKQALGEIDRMASALGLPENVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAG 201
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI + V + E+ + + + L+L +P + ++PRF + L L+ A+
Sbjct: 202 TPRSLDEIERVSRVEKMELTRTYRYVVRELKLEIEPADPEQ---YVPRFASDLDLSDEAE 258
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AA++Y A L +++ TQ+E+ V ++EVT+R Y
Sbjct: 259 RQARQLLKNAKEAAIHSGKSPVGLAAASVYAAALLTNEKVTQSEVSDVANVSEVTIRNRY 318
Query: 310 KELLE 314
KELLE
Sbjct: 319 KELLE 323
>gi|257052263|ref|YP_003130096.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691026|gb|ACV11363.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA++ A R+A
Sbjct: 134 NLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EI + + + L L +P + S ++PRF + L+L++ A+
Sbjct: 194 VPRSLDELTDVSRVEKDEIARTYRYVVRELGLEVRPADPES---YVPRFTSDLELSEEAE 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAAIY A L +++ TQA + +V ++EVT+R Y
Sbjct: 251 RRARELLANAKEEGVHSGKSPVGLAAAAIYAASLLTNEKTTQAAVSEVADISEVTIRNRY 310
Query: 310 KELLE 314
ELLE
Sbjct: 311 HELLE 315
>gi|435846710|ref|YP_007308960.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672978|gb|AGB37170.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 196 TPRSLDEISAVSRVDKMELTRTYRYIIRELGLEVKPADPEH---YVPRFVSDLDLSDETE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + + + + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R Y
Sbjct: 253 RMARELLDSAREEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRY 312
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 313 KELLEASDSAAPA 325
>gi|448292233|ref|ZP_21482893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448541523|ref|ZP_21624239.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549791|ref|ZP_21628396.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555098|ref|ZP_21631138.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445573033|gb|ELY27560.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445707848|gb|ELZ59696.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712839|gb|ELZ64620.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717843|gb|ELZ69546.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R A
Sbjct: 129 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAG 188
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + EI + + + +LS I ++PRF + L L+ ++
Sbjct: 189 TPRSLDEITSVSRVEKDEIARTYRYV--VRELSLEIKPADPEQYVPRFASDLGLSDESER 246
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 247 RARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYH 306
Query: 311 ELLE 314
ELLE
Sbjct: 307 ELLE 310
>gi|448586312|ref|ZP_21648386.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724967|gb|ELZ76593.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 318
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R A
Sbjct: 129 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAD 188
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + EI + + + L+L I ++PRF + L L+ ++
Sbjct: 189 TPRSLDEITSVSRVEKDEIARTYRYVVRELKLE--IKPADPEQYVPRFASELGLSDESER 246
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 247 RARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYH 306
Query: 311 ELLE 314
ELLE
Sbjct: 307 ELLE 310
>gi|168012200|ref|XP_001758790.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689927|gb|EDQ76296.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 9/201 (4%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++A LGL I D A +++++ RNRS EA+ + L A R+ +PRT
Sbjct: 106 AFRSIGNMADRLGLVSTIKDRANEIYKNVVDLKLTRNRSHEAILASCLYIACRQEDKPRT 165
Query: 195 LQE--ISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMP----RFCTLLQLNKSA 248
+E S++ + + G+ K L + ++ I+ +H RFC+ L + K+
Sbjct: 166 FKEEICSVSNGASKTDTGRITKKLVKQIEKGMGISMEMGTIHAGDFSRRFCSHLDMEKNE 225
Query: 249 QVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ-AEICKVTGLTEVTLRK 307
T V ++ R+P+S++AAAI++ QL +K K + +I +V G+ E ++R
Sbjct: 226 VRAITET--VKKSEMLVIGRSPLSVAAAAIFMISQLNEKDKKELKDISRVAGVNEESIRF 283
Query: 308 VYKELLENWDDLLPSNYTPAV 328
+Y+EL + L+P + V
Sbjct: 284 MYRELYPHASKLIPEWFLKDV 304
>gi|448322082|ref|ZP_21511555.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602070|gb|ELY56050.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 5/184 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A L+R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EIG+ + + + L L +P++ ++PRFC+ L L + Q
Sbjct: 194 IPRSLDEVAAVSRVDRMEIGRTYRYISQELGLEMEPVDPKK---YVPRFCSELDLPEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A I + + ++P +AAAIY + L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 LKANEIINTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRY 310
Query: 310 KELL 313
+E +
Sbjct: 311 QEQI 314
>gi|15790009|ref|NP_279833.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235732|ref|YP_001688932.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195245|sp|Q9HR45.1|TF2B4_HALSA RecName: Full=Transcription initiation factor IIB 4; Short=TFIIB 4
gi|10580433|gb|AAG19313.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726798|emb|CAP13584.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 328
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I +AS GL + + A ++R L RS+E +AT+AL A R+A
Sbjct: 138 NLKQALGEIERMASAFGLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQAN 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E++ + V + EI + + + A +LS + A ++PRFC+ L+L+ +
Sbjct: 198 TPRSLDEVASVSRVDRGEIARTYRYV--ARELSLEVAPTDPASYVPRFCSDLELSGDVER 255
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + ++P+ ++AA++Y A L ++R TQ E+ V ++EVT+R Y
Sbjct: 256 RARDLLAAAADAGITSGKSPVGLAAASVYAAALLTNERVTQNEVSTVANVSEVTIRNRYH 315
Query: 311 ELLE 314
E+L+
Sbjct: 316 EILD 319
>gi|448482845|ref|ZP_21605616.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821131|gb|EMA70927.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 331
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 2/181 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + +L L + D A LF + LR RS+E A A + A R A RT
Sbjct: 153 AYTEIRRLTGVLELPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVART 212
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ E+ A + E + L L PI + A ++PRF + L + + + A
Sbjct: 213 VGEVCAEAKATEDEHRAAFDAMNRELGL--PIAPSGPAEYLPRFASDLGCDPAVERRAGE 270
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ E + + RNP+ ++AA +Y A + D TQ E V +T VT+R+ Y +L E
Sbjct: 271 LAERAVEEGIANGRNPVGVAAACLYTAARELDAECTQQEAADVADVTPVTVRRTYVDLTE 330
Query: 315 N 315
Sbjct: 331 E 331
>gi|448427470|ref|ZP_21583785.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445678157|gb|ELZ30651.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 343
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 2/181 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + +L L + D A LF + LR RS+E A A + A R A RT
Sbjct: 165 AYTEIRRLTGVLELPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVART 224
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ E+ A + E + L L PI + A ++PRF + L + + + A
Sbjct: 225 VGEVCAEAKATEDEHRAAFDAMNRELGL--PIAPSGPAEYLPRFASDLGCDPAVERRAGE 282
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ E + + RNP+ ++AA +Y A + D TQ E V +T VT+R+ Y +L E
Sbjct: 283 LAERAVEEGIANGRNPVGVAAACLYTAARELDAECTQQEAADVADVTPVTVRRTYVDLTE 342
Query: 315 N 315
Sbjct: 343 E 343
>gi|408402844|ref|YP_006860827.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363440|gb|AFU57170.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 310
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 105/203 (51%), Gaps = 9/203 (4%)
Query: 135 AYLQIIDVASILGL-DYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPR 193
A+ + + LGL DY + + A ++R +R S+ ++ A++ A+R++ R
Sbjct: 105 AFTMLSKIKDRLGLPDY-VIEKAAYVYRKAQERGLIRGDSIGSVLAASIYTAVRQSGVLR 163
Query: 194 TLQEISIAANVPQKEIGK-YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
TL EIS + +V K+ G+ Y +I+ E L + P+ + A ++ R L+L++ + A
Sbjct: 164 TLDEISASIDVKPKQAGRSYRRIVTE-LDIKVPMIDH--ARYIIRIANRLELDERTKRKA 220
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ E K R+PI ++A+ +YL E +TQA+I K G+TEVT+R KEL
Sbjct: 221 LELIEQARKKDLLAGRDPIGMAASILYLVNLEEKSYRTQADIAKAAGVTEVTVRNRSKEL 280
Query: 313 LENWDDLLPSNYTPAVPPEKAFP 335
D + SN + +K FP
Sbjct: 281 RNRLD--MDSNSRSTLRGQK-FP 300
>gi|448304757|ref|ZP_21494693.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590138|gb|ELY44359.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 356
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 167 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 226
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ A+
Sbjct: 227 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLDLSDEAE 283
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 284 HRARGLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 343
Query: 310 KELLE 314
ELLE
Sbjct: 344 HELLE 348
>gi|448381827|ref|ZP_21561803.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
gi|445662908|gb|ELZ15671.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
Length = 341
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + + ++R L RS+E +ATA+L A R+A
Sbjct: 153 NLKQALGEIDRMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAG 212
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L +
Sbjct: 213 TPRSLDEIAAVSRVEKAEIARTYRYVVRELGLEVQPADPES---YVPRFASDLDLADETE 269
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAA+Y A L +++ TQ ++ V ++EVT+R Y
Sbjct: 270 RRARDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRY 329
Query: 310 KELLE 314
KELLE
Sbjct: 330 KELLE 334
>gi|448346521|ref|ZP_21535406.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445632724|gb|ELY85935.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 324
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 112/200 (56%), Gaps = 11/200 (5%)
Query: 124 TSSSVMMDNLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
+S + NL+ A+ +I +AS LGL + A L+R L RS+EA+ATA L
Sbjct: 126 SSKNAQERNLKQAFGEIERMASALGLPEPCRETAGVLYRRAVDEDLLPGRSIEAMATACL 185
Query: 183 VQAIREAQEPRTL---QEISIAANVPQKEIGKYIKI-LGEALQLSQPINSNSIAVHMPRF 238
A R+ PRTL + +S VP + +Y+ LG ++ + PI+ ++P++
Sbjct: 186 YAAARQHGTPRTLVAFESVSRVEKVPVQRAYRYLSSELGLRIEPADPIH------YLPQY 239
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
+ L+++ A+ LA I E + + R+P ++AAAIY A +L ++R TQA + + T
Sbjct: 240 ASALEVSDDAERLAREILEAAKARDLHSGRSPAGLAAAAIYGAARLTNERVTQATVGEET 299
Query: 299 GLTEVTLRKVYKELLENWDD 318
G++ VT+R Y+ELL+ +++
Sbjct: 300 GVSSVTVRNRYRELLDAYEE 319
>gi|14590724|ref|NP_142794.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|3257275|dbj|BAA29958.1| 208aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 208
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 98/179 (54%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
+I ++S L L + A +++R + + RS+E++A A + + R + PRTL E
Sbjct: 26 EISRISSQLCLPKHVEREAVRIYRKLIKSGVTKGRSIESVAAACIYISCRLYKVPRTLDE 85
Query: 198 ISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
I+ A +K I + +++ + L LS ++ +F L++++ + A +
Sbjct: 86 IAKVAKEDKKVIARVYRLVVKKLGLSSKDMLIRPEYYIDKFADELEVSERVKRRALRLLN 145
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENW 316
+K + +NP+ ++A+ +Y+A LE +R+TQ EI +V G+TEVT+R YKEL++
Sbjct: 146 EAKDKGITSGKNPLGLAASILYIASLLEGERRTQKEIARVAGITEVTIRNRYKELVKEL 204
>gi|335441148|ref|ZP_08561869.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334888319|gb|EGM26618.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 325
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA++ A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EI + + + L L +P + S ++PRF + L+L++ A+
Sbjct: 196 VPRSLDELTDVSRVEKDEIARTYRYVVRELGLEVRPADPES---YVPRFTSDLELSEEAE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAAIY A L +++ TQA + +V ++EVT+R Y
Sbjct: 253 RRARELLANAKEEGVHSGKSPVGLAAAAIYAASLLTNEKTTQAAVSEVADISEVTIRNRY 312
Query: 310 KELLE 314
ELLE
Sbjct: 313 HELLE 317
>gi|448305704|ref|ZP_21495633.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445588162|gb|ELY42408.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 325
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ +
Sbjct: 197 TPRSLDEIAAVSRVEKDEIARTYRYVIRELGLEVQPADPES---YVPRFASDLDLSDETE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAA+Y A L +++ TQ ++ V ++EVT+R Y
Sbjct: 254 RRARSLLSSAKEQGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRY 313
Query: 310 KELLENWDDLL 320
ELLE D L
Sbjct: 314 HELLEAEDGGL 324
>gi|448336058|ref|ZP_21525172.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445630482|gb|ELY83744.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 176
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+AS LG+ + + A ++R S +R RS+E +AT+ L R+ PR+L E++
Sbjct: 1 MASALGVPRSVREVASVIYRQALSNDLIRGRSIEGVATSCLYAGCRQEGIPRSLDEVTEV 60
Query: 202 ANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVI 260
+ V +KEIG+ + + + L L +P + ++PRFC+ L++ + ++ A I +
Sbjct: 61 SRVGKKEIGRTYRYIAKELSLEMKPADPKE---YVPRFCSDLEVGEEVKMKAIEIIDESA 117
Query: 261 NKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ + ++P +AAAIY A L +++KTQ EI +V +TEVT+R Y+E +E
Sbjct: 118 EQGLLSGKSPTGFAAAAIYAASLLCNEKKTQKEIAEVAQVTEVTIRNRYQEQIE 171
>gi|448348503|ref|ZP_21537352.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445642870|gb|ELY95932.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 360
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 155/335 (46%), Gaps = 23/335 (6%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQ----------CQNHHLFHIRAQDTPL 52
CP C GR T + T C CG V+ ER+ + H + +D L
Sbjct: 34 CPECG---GRLITDDE-HAETVCEDCGLVVXERERCPECGGRLITDDEHAETV-CEDCGL 88
Query: 53 CLVTSDLPSIPQPQQNDGVDEDPFQPTGF-ITAFSAWSLVPSPLFLRSSHSFSGQLAELE 111
+ ++ P+ + D ++D G T + + + + ++ L+ +
Sbjct: 89 VVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMMHDQGLSTNIGWQDKDAYGKSLSSRQ 148
Query: 112 RTF--ELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATC 168
R L + + + NL+ L ID +AS LGL ++ + A ++R
Sbjct: 149 RQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALEEDL 208
Query: 169 LRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPIN 227
L RS+E +AT++L + R+A PR+L EIS + V + E+ + + + L L +P +
Sbjct: 209 LPGRSIEGVATSSLYASARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLEVKPAD 268
Query: 228 SNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK 287
++PRF + L L+ + +A + E + + ++P+ ++AA +Y A L ++
Sbjct: 269 PEH---YVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNE 325
Query: 288 RKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPS 322
+ TQ E+ +V ++EVT+R YKELLE D P+
Sbjct: 326 KVTQNEVSEVASISEVTIRNRYKELLEASDTAAPA 360
>gi|448351752|ref|ZP_21540546.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445632312|gb|ELY85524.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 341
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 105/188 (55%), Gaps = 11/188 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L + R+A
Sbjct: 153 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAG 212
Query: 191 EPRTLQEISIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNK 246
PR+L EIS + V + EI + I+ LG +Q + P++ ++PRF + L+L+
Sbjct: 213 TPRSLDEISAVSRVEKDEIARTYRYVIRELGLEVQPADPVS------YVPRFASDLELSD 266
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A + E + ++P+ ++AAA+Y L +++ TQ ++ +V ++EVT+R
Sbjct: 267 ETERRARTLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEVTIR 326
Query: 307 KVYKELLE 314
Y ELLE
Sbjct: 327 NRYHELLE 334
>gi|448338899|ref|ZP_21527933.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448344427|ref|ZP_21533338.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445621222|gb|ELY74700.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445638546|gb|ELY91674.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLELSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARSLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|399574277|ref|ZP_10768036.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240109|gb|EJN61034.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 324
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R + L RS+E +ATAAL + R+A
Sbjct: 135 NLKQALGEIDRMASALGLPQAVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAG 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + E+ + + + L+L QP + ++PRF + L L+ A+
Sbjct: 195 TPRSLDEIASVSRVDKMELTRTYRYVVRELKLEIQPADPEQ---YVPRFASDLGLSDEAE 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + ++P+ ++AAA+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 252 RRARELLRTAKEAGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSSVANISEVTIRNRY 311
Query: 310 KELLE 314
KELLE
Sbjct: 312 KELLE 316
>gi|448316805|ref|ZP_21506385.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445606975|gb|ELY60873.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 321
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 99/182 (54%), Gaps = 5/182 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A L+R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EIG+ + + + L L +P++ ++PRFC+ L L + Q
Sbjct: 194 IPRSLDEVAAVSRVDRMEIGRTYRYISQELGLEMEPVDPKK---YVPRFCSELDLPEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A I + + ++P +AAAIY + L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 LKANEIITTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRY 310
Query: 310 KE 311
+E
Sbjct: 311 QE 312
>gi|448327577|ref|ZP_21516901.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445617824|gb|ELY71416.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 327
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 138 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 198 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLELSDEAE 254
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 255 HRARSLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 314
Query: 310 KELLE 314
ELLE
Sbjct: 315 HELLE 319
>gi|397775888|ref|YP_006543434.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342843|ref|ZP_21531788.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397684981|gb|AFO59358.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445624676|gb|ELY78052.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLELSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARSLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|448396906|ref|ZP_21569354.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673435|gb|ELZ25996.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 326
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLELSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARSLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|448590590|ref|ZP_21650355.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445734086|gb|ELZ85645.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 315
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +AT+AL A R A
Sbjct: 126 NLKQALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYAAARMAD 185
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + EI + + + L+L I ++PRF + L L+ +
Sbjct: 186 TPRSLDEITSVSRVEKDEIARTYRYVVRELKLE--IKPADPEQYVPRFASELGLSDEPER 243
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 244 RARQLLKNAKEQSVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYH 303
Query: 311 ELLE 314
ELLE
Sbjct: 304 ELLE 307
>gi|435846604|ref|YP_007308854.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672872|gb|AGB37064.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 321
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 5/184 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + A L+R +R RS+E +AT+ L A R
Sbjct: 134 NLQFALSETDRMASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EIG+ + + + L L +P++ ++PRFC+ L L + Q
Sbjct: 194 IPRSLDEVAAVSRVDRMEIGRTYRYISQELGLEMEPVDPKK---YVPRFCSELDLPEEVQ 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A I + + ++P +AAAIY + L +++KTQ E+ V +TEVT+R Y
Sbjct: 251 LKANEIITTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRY 310
Query: 310 KELL 313
+E +
Sbjct: 311 QEQI 314
>gi|389846515|ref|YP_006348754.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448615811|ref|ZP_21664574.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243821|gb|AFK18767.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751942|gb|EMA03373.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 345
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R + L RS+E +ATAAL + R A
Sbjct: 156 NLKQALGEIDRMASALGLPESVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAS 215
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V ++EI + + + L+L I ++PRF + L L+ ++
Sbjct: 216 TPRSLDEITSVSRVEKEEIARTYRYVVRELKL--EIKPADPEQYVPRFASELGLSDESER 273
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + + ++P+ ++AAA+Y A L +++ TQ E+ V ++EVT+R Y
Sbjct: 274 RARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSGVANISEVTIRNRYH 333
Query: 311 ELLE 314
ELLE
Sbjct: 334 ELLE 337
>gi|448513858|ref|ZP_21616789.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448526632|ref|ZP_21619901.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445693011|gb|ELZ45174.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445698859|gb|ELZ50897.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 337
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 2/181 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + +L L + D A LF + LR RS+E A A + A R A RT
Sbjct: 159 AYTEIRRLTGVLELPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVART 218
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ E+ A + E + L L PI + A ++PRF + L + + + A
Sbjct: 219 VGEVCAEAKATEDEHRAAFDAMNRELGL--PIAPSGPAEYLPRFASDLGCDPAVERRAGE 276
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ E + + RNP+ ++AA +Y A + D TQ E V +T VT+R+ Y +L E
Sbjct: 277 LAERAVEEGIANGRNPVGVAAACLYTAARELDAECTQQEAADVADVTPVTVRQTYVDLTE 336
Query: 315 N 315
Sbjct: 337 E 337
>gi|146304955|ref|YP_001192271.1| transcription initiation factor IIB [Metallosphaera sedula DSM
5348]
gi|145703205|gb|ABP96347.1| Transcription initiation factor IIB (TFIIB) [Metallosphaera sedula
DSM 5348]
Length = 305
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 104/189 (55%), Gaps = 2/189 (1%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
SS+ + +A ++ + ++LGL + D ++R +R RS+E++ AA+ +
Sbjct: 110 SSIDRNLAQAMNELERIGNLLGLPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYAS 169
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R + RTL EI+ +KE+ + ++L L + P++ ++ R +LL L+
Sbjct: 170 CRRMKIARTLDEIAQYTKANRKEVARCYRLLLRELNVDVPVSDPK--DYVTRIGSLLGLS 227
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
++ LA I E N ++P ++AAAIY+A L ++R+TQ EI +V G+TEVT+
Sbjct: 228 GASMKLAAEILEKAKNVGLTAGKDPAGLAAAAIYIAALLNEERRTQKEIAQVAGVTEVTV 287
Query: 306 RKVYKELLE 314
R YKEL++
Sbjct: 288 RNRYKELIQ 296
>gi|300713081|ref|YP_003738893.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|299126765|gb|ADJ17102.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 345
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 5/187 (2%)
Query: 132 NLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ A+ +I +AS LGL I + A L+R L RS+E +ATA+L A R+
Sbjct: 155 NLKQAFGEIRRMASALGLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHS 214
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PRTL E+ + V + I + + L L L +P++ ++P+F + L ++ A
Sbjct: 215 TPRTLAELETVSRVKRLRIQRAYRYLSRELGLRMEPVDPLQ---YVPQFASELNVSDEAT 271
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + R+P ++A AIY A +L +++ TQ + VT ++ +T+R Y
Sbjct: 272 RRARDLLTTAKAQGVHSGRSPAGLAAGAIYAATRLTNEQVTQETVRAVTHVSRMTIRIRY 331
Query: 310 KELLENW 316
+ELLE +
Sbjct: 332 QELLEVY 338
>gi|452207622|ref|YP_007487744.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083722|emb|CCQ37037.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 321
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 106/190 (55%), Gaps = 5/190 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA++ A R+A
Sbjct: 132 NLKQALGEIDRMASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTASVYAAARQAG 191
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EI + + + L L P + S ++PRF + L L++ A+
Sbjct: 192 VPRSLDEVAGVSRVEKSEIARTYRYVVRELGLEVAPADPES---YVPRFASDLDLSEEAE 248
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 249 NRARKLLGNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKTTQAAVSEVADISEVTIRNRY 308
Query: 310 KELLENWDDL 319
ELLE DL
Sbjct: 309 HELLEAEQDL 318
>gi|448320031|ref|ZP_21509519.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445606437|gb|ELY60341.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 326
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLELSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARGLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|435846022|ref|YP_007308272.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672290|gb|AGB36482.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 326
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLELSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARGLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|374633244|ref|ZP_09705611.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
gi|373524728|gb|EHP69605.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
Length = 306
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 104/189 (55%), Gaps = 2/189 (1%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
SS+ + +A ++ + ++LGL + D ++R +R RS+E++ AA+ +
Sbjct: 111 SSIDRNLAQAMNELERIGNLLGLPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYAS 170
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R + RTL EI+ +KE+ + ++L L + P++ ++ R +LL L+
Sbjct: 171 CRRMKIARTLDEIAQYTKANRKEVARCYRLLLRELNVDVPVSDPK--DYVTRIGSLLGLS 228
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
++ LA I E N ++P ++AAAIY+A L ++R+TQ EI +V G+TEVT+
Sbjct: 229 GASMKLAAEILEKAKNVGLTAGKDPAGLAAAAIYIAALLNEERRTQKEIAQVAGVTEVTV 288
Query: 306 RKVYKELLE 314
R YKEL++
Sbjct: 289 RNRYKELIQ 297
>gi|341885208|gb|EGT41143.1| hypothetical protein CAEBREN_12544 [Caenorhabditis brenneri]
Length = 254
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I +++ + L +I ++A ++F+D + LR ++ EA A A L A R+ PRT +EI
Sbjct: 111 IREMSERIHLPRNIQENASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEI 170
Query: 199 SIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
+ V +KEIG+ KI+ L+ + + I S A M RFC L L S Q AT I +
Sbjct: 171 CAVSRVSKKEIGRCFKIIIRNLETNLEQITS---ADFMSRFCGNLYLPNSIQAAATRIAK 227
Query: 258 VVINKCFCTRRNPISISAAAIYLACQ 283
++ R PISI+AAAIY+A Q
Sbjct: 228 RAVDMDLVAGRTPISIAAAAIYMASQ 253
>gi|433592506|ref|YP_007282002.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334943|ref|ZP_21524096.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384407|ref|ZP_21563245.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433307286|gb|AGB33098.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618184|gb|ELY71763.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445658473|gb|ELZ11291.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 326
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLELSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARSLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|407464443|ref|YP_006775325.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047631|gb|AFS82383.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 298
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 143/313 (45%), Gaps = 27/313 (8%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLV-TSDL 59
+KCP C T S C +CG V+ E+ R D+P+ T D
Sbjct: 6 IKCPRCGK---NTLVTDVESSEVFCSNCGIVVEEKVDDGRP--ERRFADSPVIKSHTGDK 60
Query: 60 PSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSS 119
S+ + + +PF +PL S S + L R ++ S
Sbjct: 61 TSLTRHDRGLSTMINPFNKDS----------TGNPL----STSMKLSMTRL-RKWDSRSR 105
Query: 120 STTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALAT 179
TST ++ +A L+++ + L L I + A ++R +R RS+ +L
Sbjct: 106 VKTSTDRNLQ----QALLELLKMKEKLSLPDAIAEKASYIYRKALEKKLVRGRSISSLVA 161
Query: 180 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFC 239
A+L A RE++ PRTL+E++ + +KEI +++ + L L P+ +S++ + +
Sbjct: 162 ASLYAACRESETPRTLREVAATIGIKRKEISATYRLIFKELDLKMPV-IDSVSC-IAKIA 219
Query: 240 TLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 299
+ +L++ + A I + + ++P+ ++A+A+YLAC ++ +TQ +I G
Sbjct: 220 SNAELSEKTKRHAIKILKNAEKQNALAGKHPMGVAASALYLACINLEENRTQKDIADAAG 279
Query: 300 LTEVTLRKVYKEL 312
+TEVT+R K L
Sbjct: 280 ITEVTIRNRCKNL 292
>gi|409049636|gb|EKM59113.1| hypothetical protein PHACADRAFT_249341 [Phanerochaete carnosa
HHB-10118-sp]
Length = 350
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 128/310 (41%), Gaps = 38/310 (12%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CG+CG V+ +R + A D D PS G DP
Sbjct: 52 CGTCGLVLGDRVVDTRSEWRTFANDE------GDDPS------RVGAAIDP--------- 90
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
L+ L ++ SF + L R EL +++ ++S + L+A+ I
Sbjct: 91 -----LMEGVEQLDTTISFKDGGSGLAR--ELQRAASRGSASRSERNLLQAFRDISSWCD 143
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
L I D A QL++ LR + +EA+ A + A R+A PRT +EI +V
Sbjct: 144 QFSLPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRKAHVPRTFREICNLTHV 203
Query: 205 PQKEIGKYIKILGEALQL----------SQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+K +G+ K L +A L S +S + R+C L L + Q + +
Sbjct: 204 SKKVLGQCYKQLEQAFNLTPGASADRQTSSATSSTGPEDLLVRYCNHLDLPPNVQPICSD 263
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
I + R+PIS++ AIY C L K K+ +I V G++E T++ VY+
Sbjct: 264 IIVKARDLGIALGRSPISVAGGAIYFTCHLLGKPKSMKDISAVAGVSEATIKLVYRLYYA 323
Query: 315 NWDDLLPSNY 324
+ L+ +
Sbjct: 324 EKEKLVKEEW 333
>gi|448311268|ref|ZP_21501032.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445605096|gb|ELY59027.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 329
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 140 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 200 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLELSDEAE 256
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 257 HRARALLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 316
Query: 310 KELLE 314
ELLE
Sbjct: 317 HELLE 321
>gi|448308488|ref|ZP_21498365.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593776|gb|ELY47945.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 326
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPTNVRETASVIYRRALNEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLDLSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARGLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|397772740|ref|YP_006540286.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397681833|gb|AFO56210.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 324
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 112/200 (56%), Gaps = 11/200 (5%)
Query: 124 TSSSVMMDNLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
+S + NL+ A+ +I +AS LGL + A L+R L RS+EA+ATA L
Sbjct: 126 SSKNAQERNLKQAFGEIERMASALGLPKPCRETAGVLYRRAVDEDLLPGRSIEAMATACL 185
Query: 183 VQAIREAQEPRTL---QEISIAANVPQKEIGKYIKI-LGEALQLSQPINSNSIAVHMPRF 238
A R+ PRTL + +S +P + +Y+ LG ++ + PI+ ++P++
Sbjct: 186 YAAARQHGTPRTLVAFESVSRVEKLPVQRAYRYLSSELGLRIEPADPIH------YLPQY 239
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
+ L+++ A+ LA I E + + R+P ++AAAIY A +L ++R TQA + + T
Sbjct: 240 ASALEVSDDAERLAREILEAAKARDLHSGRSPAGLAAAAIYGAARLTNERVTQATVGEET 299
Query: 299 GLTEVTLRKVYKELLENWDD 318
G++ VT+R Y+ELL+ +++
Sbjct: 300 GVSSVTVRNRYRELLDAYEE 319
>gi|297527296|ref|YP_003669320.1| Transcription factor TFIIB cyclin-like protein [Staphylothermus
hellenicus DSM 12710]
gi|297256212|gb|ADI32421.1| Transcription factor TFIIB cyclin-related protein [Staphylothermus
hellenicus DSM 12710]
Length = 313
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 14/232 (6%)
Query: 99 SSHSFSGQLAELERTFELLS----SSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICD 154
S+ +G+ E R E+ + + SS+ + +A ++ ++ L L ++ +
Sbjct: 87 SNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQLNLPRNVKE 146
Query: 155 HAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIK 214
A +++R +R RS+E++ AA+ A RE + PRTL EIS +K+I + +
Sbjct: 147 EAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKVPRTLDEISKHTKSSRKDIARCYR 206
Query: 215 ILGEAL----QLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNP 270
+L + L Q S PI+ +PR L L A I + ++P
Sbjct: 207 LLLKELDIKVQTSDPID------FIPRIAHALNLGGGVMKKAAEILHKARSIGVTAGKDP 260
Query: 271 ISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPS 322
++AAA+Y+A QL +R+TQ EI V G+TEVT+R YKEL + LP+
Sbjct: 261 AGLAAAAVYIAAQLSGERRTQKEIAHVAGVTEVTVRNRYKELAKELGIELPT 312
>gi|448448382|ref|ZP_21591195.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814798|gb|EMA64756.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 380
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R S L RS+E +ATAAL A R+
Sbjct: 192 NLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQVG 251
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E + + V + E+ + + + L L QP + S ++PRF + L L++ +
Sbjct: 252 NPRSLDEFTAVSRVEKMELTRTYRYVVRELGLRVQPADPTS---YVPRFVSRLDLSEETE 308
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E N + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R Y
Sbjct: 309 RRARELLEDAANAGITSGKSPVGLAAAAVYAAALLSNEKVTQSEVSDVADVSEVTIRNRY 368
Query: 310 KELLE 314
KELLE
Sbjct: 369 KELLE 373
>gi|448575069|ref|ZP_21641592.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445732748|gb|ELZ84330.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 315
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +AT++L A R A
Sbjct: 126 NLKQALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSSLYAAARMAD 185
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + EI + + + L+L I ++PRF + L L+ +
Sbjct: 186 TPRSLDEITSVSRVEKDEIARTYRYVVRELKLE--IKPADPEQYVPRFASELGLSDEPER 243
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 244 RARQLLKNAKEQSVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYH 303
Query: 311 ELLE 314
ELLE
Sbjct: 304 ELLE 307
>gi|448294148|ref|ZP_21484234.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|445587483|gb|ELY41742.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 298
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 5/187 (2%)
Query: 132 NLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ A+ +I +AS LGL I + A L+R L RS+E +ATA+L A R+
Sbjct: 108 NLKQAFGEIRRMASALGLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHS 167
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PRTL E+ + V + I + + L L L +P++ ++P+F + L ++ A
Sbjct: 168 TPRTLAELETVSRVKRLRIQRAYRYLSRELGLRMEPVDPLQ---YVPQFASELNVSDEAT 224
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + R+P ++A AIY A +L +++ TQ + VT ++ +T+R Y
Sbjct: 225 RRARDLLTTAKAQGVHSGRSPAGLAAGAIYAATRLTNEQVTQETVRAVTHVSRMTIRIRY 284
Query: 310 KELLENW 316
+ELLE +
Sbjct: 285 QELLEVY 291
>gi|448300851|ref|ZP_21490848.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584841|gb|ELY39146.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 316
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 128 NLKYALSEIDRMVSALGVPRPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKED 187
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L + K +
Sbjct: 188 IPRSLEEVTSVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVGKEVE 244
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L D+ Q + T VT+R Y
Sbjct: 245 TKAVEIIDTTTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRY 304
Query: 310 KELLENWD 317
+E LE D
Sbjct: 305 REQLEAID 312
>gi|387594621|gb|EIJ89645.1| transcription initiation factor TFIIB [Nematocida parisii ERTm3]
Length = 312
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 16/224 (7%)
Query: 116 LLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDY------------DICDHAFQLFRDC 163
L+SS + S S+ +++ L+ + A I GL+ I D A +F+
Sbjct: 82 LISSGSGLASYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLSKTISDAAKYVFKTV 141
Query: 164 CSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS 223
+ L+ +++E +A A + A R+A RT +E+SI VP+KEIG+ K + +
Sbjct: 142 ENKKVLKGKNLEGIAAACIYIACRQAGFVRTFKEVSILTAVPKKEIGRCYKAIFPHIDKL 201
Query: 224 QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQ 283
+++ I + RFC+ L L+ Q +A I + ++P SI+AA IYL
Sbjct: 202 AVVSTEDI---VARFCSDLTLSIDIQKVALTISQRAQAIGCIAGKSPDSIAAAIIYLITY 258
Query: 284 L-EDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTP 326
L ++K Q I VT +T+VT++ YKELL +L+P P
Sbjct: 259 LFPTQKKIQKNIQIVTNVTDVTIKNTYKELLPYRYELVPEGIVP 302
>gi|448319021|ref|ZP_21508530.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445597140|gb|ELY51217.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 326
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLELSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARALLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|336255382|ref|YP_004598489.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335339371|gb|AEH38610.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 329
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 140 NLKQALGEIDRMASALGLPNNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAG 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 200 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLELSDEAE 256
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 257 HRARSLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 316
Query: 310 KELLE 314
ELLE
Sbjct: 317 HELLE 321
>gi|387596531|gb|EIJ94152.1| transcription initiation factor TFIIB [Nematocida parisii ERTm1]
Length = 312
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 16/224 (7%)
Query: 116 LLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDY------------DICDHAFQLFRDC 163
L+SS + S S+ +++ L+ + A I GL+ I D A +F+
Sbjct: 82 LISSGSGLASYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLSKTISDAAKYVFKTV 141
Query: 164 CSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS 223
+ L+ +++E +A A + A R+A RT +E+SI VP+KEIG+ K + +
Sbjct: 142 ENKKVLKGKNLEGIAAACIYIACRQAGFVRTFKEVSILTAVPKKEIGRCYKAIFPHIDKL 201
Query: 224 QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQ 283
+++ I + RFC+ L L+ Q +A I + ++P SI+AA IYL
Sbjct: 202 AVVSTEDI---VARFCSDLTLSIDIQKVALTISQRAQAIGCIAGKSPDSIAAAIIYLITY 258
Query: 284 L-EDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTP 326
L ++K Q I VT +T+VT++ YKELL +L+P P
Sbjct: 259 LFPTQKKIQKNIQIVTNVTDVTIKNTYKELLPYRYELVPEGIVP 302
>gi|119187159|ref|XP_001244186.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|303317234|ref|XP_003068619.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108300|gb|EER26474.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038548|gb|EFW20483.1| transcription initiation factor IIB [Coccidioides posadasii str.
Silveira]
gi|392870902|gb|EAS32745.2| transcription initiation factor IIB [Coccidioides immitis RS]
Length = 353
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 139/340 (40%), Gaps = 53/340 (15%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSI 62
CP C T + +I CGSCG V+A+R+ H + + D
Sbjct: 27 CPECKENPPNLRTPDSHETI--CGSCGLVLADREIDQHSEWRTFSNDD------------ 72
Query: 63 PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSG-QLAELERTFELLSSST 121
Q ND DP + L + L + S+ G + EL R +SS
Sbjct: 73 ---QNND----DPSRVGDAANPL----LNGNQLETQISYGQGGAKTRELHRAQNKMSSEK 121
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
T+ + L AY +I + + ++ D A LF+ A + +S + +
Sbjct: 122 TNRAL------LAAYKEIGALCDGFNIQKNVADTAKYLFKVVDDAKAFKGKSQDVIIAGC 175
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP--- 236
+ A R+ + PRT EI V +KEIG+ K L + Q + INS + +P
Sbjct: 176 IFIACRQCKVPRTFTEIFALTRVSKKEIGRIYKALEKFFTAQNLERINSVVSSGGVPDPN 235
Query: 237 ----------------RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYL 280
RFC LL L +++ + + V + R+P+SI AA+IY+
Sbjct: 236 ETYTATTSTKPSDLCNRFCNLLDLPFQVTNVSSALADRVTSMGDLAGRSPLSIVAASIYM 295
Query: 281 ACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
A L + K+ EI V +++ T+R YK+L + L+
Sbjct: 296 ASFLMGQGKSAKEISAVAHVSDGTIRGAYKQLYAERERLI 335
>gi|448628519|ref|ZP_21672288.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445758050|gb|EMA09375.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 286
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 4/191 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
SS + + A+ +I + S + L I D A LF + L+ R++E A AA+
Sbjct: 99 SSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQNEDLLKGRTLEGFAAAAIYA 158
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQ 243
R RT+ E+ A Q E+ L L L + PI+ ++PRF T L+
Sbjct: 159 TCRTEGVARTVDELCTVAKATQAELRAAYDALNRELGLPTGPIDPRE---YVPRFATALE 215
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L + + A + +V ++ + RNP ++AA +Y A Q + TQAE + +T V
Sbjct: 216 LPTAVRQRAERLVDVAQDRGLVSGRNPAGVAAACLYTAAQEQGVALTQAEAAETADVTPV 275
Query: 304 TLRKVYKELLE 314
TLR Y EL E
Sbjct: 276 TLRGTYTELQE 286
>gi|329765337|ref|ZP_08256917.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138243|gb|EGG42499.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 303
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 97/188 (51%), Gaps = 6/188 (3%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L +D + L L + + A ++R +R RS++ L A L + R +
Sbjct: 118 NLRQALNEMDKLKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTE 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL +++ N+ +K++ + +++ L+L P+ V R ++ +L++ ++
Sbjct: 178 TPRTLDDVAKGINIRRKDVARCYRLIFRELELKMPVVDPVKGV--SRIASIAELSEKSKR 235
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV-- 308
A I E ++P+ I+AAA+YLAC + K+Q +I +G+TEVT+R
Sbjct: 236 KAVAILEQAKKIGMVAGKDPMGIAAAALYLACISTGEIKSQKDISIASGVTEVTIRNRCA 295
Query: 309 -YKELLEN 315
+++L+N
Sbjct: 296 GLRKMLQN 303
>gi|149244370|ref|XP_001526728.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449122|gb|EDK43378.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
Length = 349
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 15/201 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY++I + L + D A ++++ LR +S E++ A++ R+A+ R
Sbjct: 131 AYVKISQMCDGYQLPKIVQDGAKEVYKMVYEEKSLRGKSQESIMAASIFIGCRKAKVARL 190
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH---------------MPRFC 239
+EI NVP+KEIGK +I+ +Q + N + A + + RFC
Sbjct: 191 FKEIWALTNVPKKEIGKVFRIMDRIIQENHAANPQTAAYYSHENIQTTQTSAEDLIRRFC 250
Query: 240 TLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 299
+ L LN A HI R+P +I+A IY+AC + ++I TG
Sbjct: 251 SHLGLNTQVTNAAEHIARRAKEVGVLAGRSPTTIAATVIYMACMVFGIDMPPSKISDKTG 310
Query: 300 LTEVTLRKVYKELLENWDDLL 320
+++ T++ +K L E D L+
Sbjct: 311 VSDGTIKTSHKYLYEARDKLI 331
>gi|284164125|ref|YP_003402404.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284013780|gb|ADB59731.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 329
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 140 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ A+
Sbjct: 200 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLDLSDEAE 256
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 257 HRARALLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 316
Query: 310 KELLE 314
ELLE
Sbjct: 317 HELLE 321
>gi|448309192|ref|ZP_21499054.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
gi|445591113|gb|ELY45322.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
Length = 316
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 15/225 (6%)
Query: 99 SSHSFS----GQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDIC 153
+ HS S GQL L E + + NL+ L ID + S LG+ +
Sbjct: 97 NGHSMSADKHGQLHRLRVWQERIRTKNAGER------NLKYALSEIDRMVSALGVPKPVK 150
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
+ A ++R +R RS+E +AT+AL A R+ PR+L+E++ + V Q+EIG+
Sbjct: 151 ETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTAVSRVDQREIGRTY 210
Query: 214 KILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPIS 272
+ + + L ++ +P N +PRFC+ L ++K + A I + + + ++P
Sbjct: 211 RYIADELDINLEPTNPRQF---VPRFCSELNVDKDVETKAVEIIDQTTQQGLHSGKSPTG 267
Query: 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+AAAIY A L D+ Q + T VT+R Y+E LE D
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYREQLEAID 312
>gi|313126285|ref|YP_004036555.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448286126|ref|ZP_21477361.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292650|gb|ADQ67110.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445575177|gb|ELY29656.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R+A
Sbjct: 141 NLKQALGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAG 200
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E+ + V + E+ + + + L+L +P + ++PRF + L L+ A+
Sbjct: 201 TPRSLDELETVSRVDKMELTRTYRYVVRELKLEIEPADPEQ---YVPRFASELDLSDEAE 257
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 258 RQARDLLRNAKKAGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSEVASISEVTIRNRY 317
Query: 310 KELLE 314
KELLE
Sbjct: 318 KELLE 322
>gi|448302684|ref|ZP_21492657.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595257|gb|ELY49368.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 316
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 128 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKED 187
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++K +
Sbjct: 188 IPRSLEEVTAVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVDKDVE 244
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L D+ Q + T VT+R Y
Sbjct: 245 TKAVEIIDETTQQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRY 304
Query: 310 KELLENWD 317
+E LE D
Sbjct: 305 REQLEAID 312
>gi|448444597|ref|ZP_21589887.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445686010|gb|ELZ38351.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 2/180 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + L L + D A LF + LR RS+E A A L A R A RT
Sbjct: 146 AYTEIRRLTGALELPDSVRDTACTLFDSAQDESLLRGRSLEGFAAACLYVACRTADVART 205
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ EI A + E + L L PI A ++PRF + L + + + A
Sbjct: 206 VGEICAEAKATEAEHRAAFDAMNRELGL--PIAPTGPAEYLPRFASDLDCDAAVERRAGE 263
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ E + + RNP+ ++AA +Y A + D TQ E +T VT+R+ Y +L E
Sbjct: 264 LAERAVEEGIANGRNPVGVAAACLYTAARELDAECTQREAADAADVTPVTVRRTYVDLTE 323
>gi|448336699|ref|ZP_21525792.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445628249|gb|ELY81558.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 324
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 112/200 (56%), Gaps = 11/200 (5%)
Query: 124 TSSSVMMDNLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
+S + NL+ A+ +I +AS LGL + A L+R L RS+EA+ATA L
Sbjct: 126 SSKNAQERNLKQAFGEIERMASALGLPEPCRETAGVLYRRAVDEELLPGRSIEAMATACL 185
Query: 183 VQAIREAQEPRTL---QEISIAANVPQKEIGKYIKI-LGEALQLSQPINSNSIAVHMPRF 238
A R+ PRTL + +S +P + +Y+ LG ++ + PI+ ++P++
Sbjct: 186 YAAARQHGTPRTLVAFESVSRVEKLPVQRAYRYLSSELGLRIEPADPIH------YLPQY 239
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
+ L+++ A+ LA I E + + R+P ++AAAIY A +L ++R TQA + + T
Sbjct: 240 ASALEVSDDAERLAREILEAAKARDLHSGRSPAGLAAAAIYGAARLTNERVTQATVGEET 299
Query: 299 GLTEVTLRKVYKELLENWDD 318
G++ VT+R Y+ELL+ +++
Sbjct: 300 GVSSVTVRNRYRELLDAYEE 319
>gi|57642222|ref|YP_184700.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|14195235|sp|P58109.1|TF2B2_PYRKO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|12381905|dbj|BAB21262.1| Tk-TFB [Thermococcus kodakaraensis]
gi|57160546|dbj|BAD86476.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 3/185 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +A+ L L + + A L+R +R RS+E + +AAL A R
Sbjct: 117 NLAFALSELDRMAAQLRLPRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEG 176
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL EI+ + V +KEIG+ + + L L+ + S ++ RF L ++ +
Sbjct: 177 IPRTLDEIASVSKVSKKEIGRSYRFMARGLGLN--LRPTSPIEYVDRFGDALGVSARTKK 234
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I I + + + P ++AAA+Y+A LE ++KTQ E+ +V +TEVT+R YK
Sbjct: 235 RAKEILNEAIKRGITSGKGPTGLAAAALYIAALLEGEKKTQREVAEVAHVTEVTVRNRYK 294
Query: 311 ELLEN 315
EL+E
Sbjct: 295 ELVEK 299
>gi|448377625|ref|ZP_21560321.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
gi|445655569|gb|ELZ08414.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
Length = 323
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 134 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EIS + V + E+ + + + +LS + ++PRF + L L++ +
Sbjct: 194 TPRSLDEISQVSRVDRMELTRTYRYI--VRELSLEVKPADPEHYVPRFISDLDLSEETER 251
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
+ + E + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R YK
Sbjct: 252 TSRELLESARGDGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVANISEVTIRNRYK 311
Query: 311 ELLE 314
ELLE
Sbjct: 312 ELLE 315
>gi|340345049|ref|ZP_08668181.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520190|gb|EGP93913.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 303
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 97/188 (51%), Gaps = 6/188 (3%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L ++ + L L + + A ++R +R RS++ L A L A R +
Sbjct: 118 NLRQALNEMGKLKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYAACRNTE 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL +++ N+ +K++ + +++ L+L P+ V R ++ +L++ ++
Sbjct: 178 TPRTLDDVANGINIRRKDVARCYRLIFRELELKMPVVDPVKGV--SRIASIAELSEKSKR 235
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV-- 308
A I E ++P+ I+AAA+YLAC + K+Q +I +G+TEVT+R
Sbjct: 236 KAVEILEQAKEIGMVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIRNRCA 295
Query: 309 -YKELLEN 315
+++L+N
Sbjct: 296 GLRKMLQN 303
>gi|433639108|ref|YP_007284868.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|433290912|gb|AGB16735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
Length = 323
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT++L A R+A
Sbjct: 134 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EIS + V + E+ + + + +LS + ++PRF + L L++ +
Sbjct: 194 TPRSLDEISQVSRVDRMELTRTYRYI--VRELSLEVKPADPEHYVPRFISDLDLSEETER 251
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
+ + E + ++P+ ++AAA+Y A L +++ TQ E+ +V ++EVT+R YK
Sbjct: 252 TSRELLESARGDGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVANISEVTIRNRYK 311
Query: 311 ELLE 314
ELLE
Sbjct: 312 ELLE 315
>gi|118431874|ref|NP_148613.2| transcription initiation factor IIB [Aeropyrum pernix K1]
gi|152031706|sp|Q9Y942.2|TF2B_AERPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116063196|dbj|BAA81458.2| transcription initiation factor IIB [Aeropyrum pernix K1]
Length = 322
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 8/187 (4%)
Query: 132 NLRAYLQII-DVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I +VAS +G+ + + A +++R+ R RS+E++ A+L A R
Sbjct: 119 NLQTALSLINEVASRMGMPEIVVEDASKIYREAMEKGLTRGRSIESIVAASLYAASRIHG 178
Query: 191 EPRTLQEI--SIAANVP---QKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
P +L +I ++ NV ++++ + ++L L + P+ V+ + L L
Sbjct: 179 LPHSLTDIIKAMKGNVDAETRRDVARSYRLLVRDLNIKIPVRKPENFVYT--IISALGLP 236
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
+ + A I ++ K ++P ++ AA+YLA RKTQ EI V G+TEVT+
Sbjct: 237 EHVAIEAIKIIDLSRKKGLTAGKDPGGLAGAAVYLAALKHGIRKTQKEIAHVVGVTEVTI 296
Query: 306 RKVYKEL 312
R YKE+
Sbjct: 297 RNRYKEI 303
>gi|295671166|ref|XP_002796130.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|225681734|gb|EEH20018.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb03]
gi|226284263|gb|EEH39829.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226288886|gb|EEH44398.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb18]
Length = 352
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 141/342 (41%), Gaps = 53/342 (15%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
+ CP C T + +I CG+CG V+A+R+ H + + D
Sbjct: 24 LVCPECRETPPNLVTPDSHETI--CGTCGLVLADREIDQHSEWRTFSND----------- 70
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLA-ELERTFELLSS 119
Q ND DP + + L + L + S+ G + +L R +SS
Sbjct: 71 ----DQNND----DPSRVGDAVNPL----LNGNQLETQISYGVGGSRSRDLHRAQNKMSS 118
Query: 120 STTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALAT 179
T+ + L AY +I + + ++ D A LF+ A + +S + +
Sbjct: 119 EKTNKTL------LAAYKEIGALCDGFNIPKNVADTAKYLFKIVDDAKAFKGKSQDVIIA 172
Query: 180 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP- 236
+ A R+ + PRT EI V +KEIG+ K L + Q + INS + +P
Sbjct: 173 GCIFIACRQCKVPRTFTEIFAVTRVTKKEIGRIYKALEKFFTAQNLERINSVVSSGGVPD 232
Query: 237 ------------------RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAI 278
RFC LL L +++ + + V + R+P+SI AA+I
Sbjct: 233 PNETYTATTSTKPSDLCNRFCNLLDLPFQVTNVSSALADRVTSTGELAGRSPLSIVAASI 292
Query: 279 YLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
Y+A L + K+ EI V +++ T+R YK++ + L+
Sbjct: 293 YMASFLMGQGKSAKEISTVAHVSDGTIRGAYKQIYAERERLI 334
>gi|70606656|ref|YP_255526.1| transcription initiation factor IIB [Sulfolobus acidocaldarius DSM
639]
gi|449066878|ref|YP_007433960.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449069150|ref|YP_007436231.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
gi|68567304|gb|AAY80233.1| transcription initiation factor B [Sulfolobus acidocaldarius DSM
639]
gi|449035386|gb|AGE70812.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449037658|gb|AGE73083.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
Length = 311
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 2/201 (0%)
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
T SS+ + +A ++ + ++L L + D A ++R +R RS+E++ A+
Sbjct: 112 TRIQSSIDRNLAQAMNELERIGNLLNLPKAVKDEAALIYRKAVEKGLVRGRSIESVVAAS 171
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTL 241
+ A R + RTL EI+ +KE+ + +++ L + P++ ++ R TL
Sbjct: 172 IYAACRRMKMARTLDEIAQFTKANRKEVARCYRLILRELDIEVPVSDPK--DYVTRIGTL 229
Query: 242 LQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 301
L L+ A I E N ++P ++AAAIY+A L D+R+TQ EI +V G+T
Sbjct: 230 LSLSGITMKHAAEIIEKAKNSGLTAGKDPAGLAAAAIYIAALLNDERRTQKEIAQVAGVT 289
Query: 302 EVTLRKVYKELLENWDDLLPS 322
EVT+R YKEL + +PS
Sbjct: 290 EVTVRNRYKELTQELKIQIPS 310
>gi|119491805|ref|XP_001263397.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
gi|119411557|gb|EAW21500.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
Length = 350
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 129/319 (40%), Gaps = 50/319 (15%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCG V+A+R+ H + + D +D PS N ++ D +
Sbjct: 43 TVCGSCGLVLADREIDMHSEWRTFSNDDQ----NNDDPSRVGDATNPLLNGDQLET---- 94
Query: 83 TAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDV 142
+ + SG+ EL R SS + + L AY +I +
Sbjct: 95 ---------------QIASGGSGRARELYRAQNKQSSEKANKAL------LAAYKEIGAL 133
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+ ++ D A LF+ A + +S E + + A R+ + PRT EI
Sbjct: 134 CDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVT 193
Query: 203 NVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP-------------------RFCTL 241
V +KEIG+ K L + Q + IN+ + +P RFC L
Sbjct: 194 KVTRKEIGRIYKALEKFFTAQNLERINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNL 253
Query: 242 LQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 301
L L +++ + + V R+P+SI AA IY+A L K+ EI +V ++
Sbjct: 254 LDLPYQVTSVSSALSDRVTTMGDLAGRSPLSIVAACIYMASYLMGHGKSAKEISQVAHVS 313
Query: 302 EVTLRKVYKELLENWDDLL 320
+ T+R YK+L + L+
Sbjct: 314 DGTIRGAYKQLYAERERLI 332
>gi|73920958|sp|Q9UWN6.2|TF2B_SULAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
Length = 307
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 2/201 (0%)
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
T SS+ + +A ++ + ++L L + D A ++R +R RS+E++ A+
Sbjct: 108 TRIQSSIDRNLAQAMNELERIGNLLNLPKAVKDEAALIYRKAVEKGLVRGRSIESVVAAS 167
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTL 241
+ A R + RTL EI+ +KE+ + +++ L + P++ ++ R TL
Sbjct: 168 IYAACRRMKMARTLDEIAQFTKANRKEVARCYRLILRELDIEVPVSDPK--DYVTRIGTL 225
Query: 242 LQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 301
L L+ A I E N ++P ++AAAIY+A L D+R+TQ EI +V G+T
Sbjct: 226 LSLSGITMKHAAEIIEKAKNSGLTAGKDPAGLAAAAIYIAALLNDERRTQKEIAQVAGVT 285
Query: 302 EVTLRKVYKELLENWDDLLPS 322
EVT+R YKEL + +PS
Sbjct: 286 EVTVRNRYKELTQELKIQIPS 306
>gi|6578937|gb|AAF18139.1|AF205429_1 archaeal transcription factor B [Sulfolobus acidocaldarius]
Length = 309
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 2/201 (0%)
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
T SS+ + +A ++ + ++L L + D A ++R +R RS+E++ A+
Sbjct: 108 TRIQSSIDRNLAQAMNELERIGNLLNLPKAVKDEAALIYRKAVEKGLVRGRSIESVVAAS 167
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTL 241
+ A R + RTL EI+ +KE+ + +++ L + P++ ++ R TL
Sbjct: 168 IYAACRRMKMARTLDEIAQFTKANRKEVARCYRLILRELDIEVPVSDPK--DYVTRIGTL 225
Query: 242 LQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 301
L L+ A I E N ++P ++AAAIY+A L D+R+TQ EI +V G+T
Sbjct: 226 LSLSGITMKHAAEIIEKAKNSGLTAGKDPAGLAAAAIYIAALLNDERRTQKEIAQVAGVT 285
Query: 302 EVTLRKVYKELLENWDDLLPS 322
EVT+R YKEL + +PS
Sbjct: 286 EVTVRNRYKELTQELKIQIPS 306
>gi|448394859|ref|ZP_21568456.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445661995|gb|ELZ14770.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 329
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 140 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ A+
Sbjct: 200 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLDLSDEAE 256
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 257 HRARALLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 316
Query: 310 KELLE 314
ELLE
Sbjct: 317 HELLE 321
>gi|393796911|ref|ZP_10380275.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 303
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 97/188 (51%), Gaps = 6/188 (3%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L +D + L L + + A ++R +R RS++ L A L + R +
Sbjct: 118 NLRQALNEMDKLKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTE 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL +++ N+ +K++ + +++ L+L P+ V R ++ +L++ ++
Sbjct: 178 TPRTLDDVAKGINIRRKDVARCYRLIFRELELKMPVVDPVKGV--SRIASIAELSEKSKR 235
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV-- 308
A I E ++P+ I+AAA+YLAC + K+Q +I +G+TEVT+R
Sbjct: 236 KAVVILEQAKKIGMVAGKDPMGIAAAALYLACISTGEIKSQKDISIASGVTEVTIRNRCA 295
Query: 309 -YKELLEN 315
+++L+N
Sbjct: 296 GLRKMLQN 303
>gi|331218510|ref|XP_003321932.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309300922|gb|EFP77513.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 345
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 12/197 (6%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+L I D+ + L + D A QL+R LR + V+A+ A + A R+++ R+
Sbjct: 130 AFLSIQDMCDTISLPRTVTDIAKQLYRRADEEKLLRGKQVDAIIAACIFIACRQSKVGRS 189
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH------------MPRFCTLL 242
+EI VP+K+IG+ K L A + S ++ M RFC+ L
Sbjct: 190 FKEIVALTRVPKKQIGQCFKALSAAFETSAVGGGGALNTTTGETSGAGAEDLMARFCSHL 249
Query: 243 QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
L Q A I + + R+PIS+++A IY A L + K+ +I V G++E
Sbjct: 250 GLPFFVQSGAKRIAILQRDMGILAGRSPISVASACIYFASHLYNNPKSAKDIAGVAGVSE 309
Query: 303 VTLRKVYKELLENWDDL 319
VT++ YK L +++
Sbjct: 310 VTIKIAYKLLYPKREEI 326
>gi|403413738|emb|CCM00438.1| predicted protein [Fibroporia radiculosa]
Length = 353
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 129/314 (41%), Gaps = 42/314 (13%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CG+CG V+ +R + A D D PS G DP
Sbjct: 52 CGTCGLVLGDRVVDTRSEWRTFANDE------GDDPS------RVGAASDP--------- 90
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
L+ L ++ SF + + R EL +++ S +S + L+A+ I
Sbjct: 91 -----LMEGMEQLDTTISFRDGGSGIAR--ELQRAASRSQASRSERNLLQAFRDIASWCD 143
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
L I D A QL++ LR + ++A+ A + A R+A PRT +EI +V
Sbjct: 144 QFSLPKTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTHV 203
Query: 205 PQKEIGKYIKILGEALQLSQPINSNSIAVHMP-------------RFCTLLQLNKSAQVL 251
+K +G+ K L +A L+ P S + H+ R+C L L + Q +
Sbjct: 204 SKKVLGQCYKALEQAFNLT-PGASATTDRHLTTPAAARGPEDLLVRYCNHLDLPPNVQPI 262
Query: 252 ATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 311
+ I R+P+SI+ AIY C L K K+ +I V G++E T++ VY+
Sbjct: 263 CSDIIIQARELGIADGRSPVSIAGGAIYFTCHLLGKVKSAKDISTVAGVSEGTIKLVYRL 322
Query: 312 LLENWDDLLPSNYT 325
+ L+ +
Sbjct: 323 YYAEKEKLVKEEWV 336
>gi|296824618|ref|XP_002850683.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
gi|238838237|gb|EEQ27899.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
Length = 352
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 131/326 (40%), Gaps = 63/326 (19%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCG V+A+R+ H + + D Q ND DP
Sbjct: 44 TICGSCGLVLADREIDPHSEWRTFSNDD---------------QNND----DP------- 77
Query: 83 TAFSAWSLVPSPLF----LRSSHSFSGQLA---ELERTFELLSSSTTSTSSSVMMDNLRA 135
S +PL L + SF A EL R +S+ T+ + L A
Sbjct: 78 ---SRVGDASNPLLNGNQLETQISFGTGGARSRELHRAQNKMSTEKTNKAL------LAA 128
Query: 136 YLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTL 195
Y +I + + ++ D A LF+ A + +S + + + A R+ + PRT
Sbjct: 129 YKEIGSLCDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTF 188
Query: 196 QEISIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP----------------- 236
EI V +KEIG+ K L + Q + INS +P
Sbjct: 189 TEIFAVTRVSKKEIGRIYKALEKFFTAQNLERINSVVSNGGVPDPNDAYTGTTSTKPSDL 248
Query: 237 --RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 294
RFC LL L +++ + + V + R+P+SI AA+IY+A L KT EI
Sbjct: 249 CNRFCNLLDLPFQVTNVSSMLADRVTSMGDLAGRSPLSIVAASIYMASFLMGHGKTAKEI 308
Query: 295 CKVTGLTEVTLRKVYKELLENWDDLL 320
V +++ T+R YK+L + L+
Sbjct: 309 SGVAHVSDGTIRGAYKQLYAERERLI 334
>gi|448362505|ref|ZP_21551111.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647985|gb|ELZ00949.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 341
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 105/188 (55%), Gaps = 11/188 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L + R+A
Sbjct: 153 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAG 212
Query: 191 EPRTLQEISIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNK 246
PR+L EI+ + V + EI + I+ LG +Q + P++ ++PRF + L+L+
Sbjct: 213 TPRSLDEIAGVSRVEKDEIARTYRYVIRELGLEVQPADPVS------YVPRFASDLELSD 266
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A + E + ++P+ ++AAA+Y L +++ TQ ++ +V ++EVT+R
Sbjct: 267 ETERRARTLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEVTIR 326
Query: 307 KVYKELLE 314
Y ELLE
Sbjct: 327 NRYHELLE 334
>gi|383625409|ref|ZP_09949815.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448700388|ref|ZP_21699496.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445779928|gb|EMA30843.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 321
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 132 NLKYALSEIDRMVSALGVPTPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKED 191
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L + K +
Sbjct: 192 IPRSLEEVTAVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVGKDVE 248
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L D+ Q + + T VT+R Y
Sbjct: 249 TKAVEIIEQTTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRY 308
Query: 310 KELLENWD 317
+E L+ D
Sbjct: 309 REQLDAID 316
>gi|448364802|ref|ZP_21553379.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445657641|gb|ELZ10466.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 339
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 105/188 (55%), Gaps = 11/188 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L + R+A
Sbjct: 151 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAG 210
Query: 191 EPRTLQEISIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNK 246
PR+L EI+ + V + EI + I+ LG +Q + P++ ++PRF + L+L+
Sbjct: 211 TPRSLDEIAGVSRVEKDEIARTYRYVIRELGLEVQPADPVS------YVPRFASDLELSD 264
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A + E + ++P+ ++AAA+Y L +++ TQ ++ +V ++EVT+R
Sbjct: 265 ETERRARTLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEVTIR 324
Query: 307 KVYKELLE 314
Y ELLE
Sbjct: 325 NRYHELLE 332
>gi|261193976|ref|XP_002623393.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239588407|gb|EEQ71050.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239607027|gb|EEQ84014.1| transcription initiation factor IIB [Ajellomyces dermatitidis ER-3]
gi|327354501|gb|EGE83358.1| transcription initiation factor IIB [Ajellomyces dermatitidis ATCC
18188]
Length = 352
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 140/340 (41%), Gaps = 53/340 (15%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSI 62
CP C T + +I CG+CG V+A+R+ H + + D
Sbjct: 26 CPECRETPPNLVTPDSHETI--CGTCGLVLADREIDQHSEWRTFSND------------- 70
Query: 63 PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLA-ELERTFELLSSST 121
Q ND DP + L + L + S+ G + EL R +SS
Sbjct: 71 --DQNND----DPSRVGDAANPL----LNGNQLETQISYGAGGSRSRELHRAQNKMSSEK 120
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
T+ V+M AY +I + + ++ D A LF+ A + +S + +
Sbjct: 121 TN---KVLM---AAYKEIGALCDGFNIPKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGC 174
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP--- 236
+ A R+ + PRT EI V +KEIG+ K L + Q + INS + +P
Sbjct: 175 IFIACRQCKVPRTFTEIFAVTRVTKKEIGRIYKALEKFFTAQNLERINSVVSSGGVPDPN 234
Query: 237 ----------------RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYL 280
RFC LL L +++ + + V + R+P+SI AA+IY+
Sbjct: 235 ETYTATTSTKPSDLCNRFCNLLDLPFQVTNVSSALADRVTSTGDLAGRSPLSIVAASIYM 294
Query: 281 ACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
A L + K+ EI V +++ T+R YK+L + L+
Sbjct: 295 ASFLMGQGKSAKEISSVAHVSDGTIRGAYKQLYAERERLI 334
>gi|448329811|ref|ZP_21519107.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613430|gb|ELY67131.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 319
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 130 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKED 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++K +
Sbjct: 190 IPRSLEEVTAVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVDKDVE 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L D+ Q + T VT+R Y
Sbjct: 247 TKAIDIIDRTTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRY 306
Query: 310 KELLENWD 317
+E LE D
Sbjct: 307 REQLEAID 314
>gi|320100432|ref|YP_004176024.1| transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
gi|319752784|gb|ADV64542.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
Length = 315
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 109/206 (52%), Gaps = 6/206 (2%)
Query: 111 ERTFELLS----SSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSA 166
E+ EL+ + T +SV + +A ++ +A +L L + + A +++R+
Sbjct: 103 EKKHELVKLRKWQARTRILTSVERNLAQAMNELDRLADVLNLPSYVKEEAARIYREAVDR 162
Query: 167 TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPI 226
+R RS+E++ AA+ A RE + PR+L EI+ + +KEI + ++L L++ +
Sbjct: 163 GLVRGRSIESVIAAAIYLACREMKVPRSLDEITRHTRIGRKEIARCYRLLLRELRIK--V 220
Query: 227 NSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLED 286
++ A ++PR L L A LA I ++P ++AAA+Y+A +
Sbjct: 221 STTDPADYVPRIVHGLGLPGQAVKLAIEIINTAKEHGVTGGKDPAGLAAAAVYMAAERLG 280
Query: 287 KRKTQAEICKVTGLTEVTLRKVYKEL 312
++KTQ EI + G+TEVT+R YKEL
Sbjct: 281 EKKTQKEIAHIAGVTEVTVRNRYKEL 306
>gi|289582455|ref|YP_003480921.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448282123|ref|ZP_21473413.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532008|gb|ADD06359.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577053|gb|ELY31498.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 326
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLDLSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARALLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|300712884|ref|YP_003738696.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|448295398|ref|ZP_21485466.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|299126568|gb|ADJ16905.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445584335|gb|ELY38658.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 340
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 101/184 (54%), Gaps = 3/184 (1%)
Query: 132 NLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ A +I + S LG+ D+ + A ++R S L RS+E + TAAL AIR+
Sbjct: 139 NLKQALAEIERMGSALGVPEDVRETASVIYRRALSEDLLPGRSIEGVTTAALYAAIRQMG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+++E+ + V + E + + + + L L + + ++PRF + L +N +
Sbjct: 199 LPRSVEEVGAVSRVDEMEFKRAYRYINQELSLE--VGPPAPDQYLPRFASDLNVNDETEG 256
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + V+ + + ++P+ ++ AA+Y A L + TQ E+ +V G++ VT+R Y+
Sbjct: 257 RARELIQTVMEEGAHSGKSPVGLAGAALYAAGILTNDGLTQDEVSEVVGVSTVTIRNRYQ 316
Query: 311 ELLE 314
ELLE
Sbjct: 317 ELLE 320
>gi|448420035|ref|ZP_21580845.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445674203|gb|ELZ26748.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 330
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 108/191 (56%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R A
Sbjct: 142 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAG 201
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L +P + ++PRF + L L+ ++
Sbjct: 202 TPRSLDEITNVSRVGKDEISRTYRYVVRELKLEIEPADPEQ---YVPRFASDLDLSDESE 258
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAAIY A L +++ TQ+++ +V ++EVT+R Y
Sbjct: 259 RHARQLLKTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSQVSEVANISEVTIRNRY 318
Query: 310 KELLENWDDLL 320
ELLE + L+
Sbjct: 319 HELLEAEEHLM 329
>gi|448309529|ref|ZP_21499387.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445589952|gb|ELY44175.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 325
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 11/192 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R L RS+E +AT++L A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPKSVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNK 246
PR+L EI+ + V + EI + I+ LG +Q + P N ++PRF + L L+
Sbjct: 197 TPRSLDEITAVSRVEKDEIARTYRYVIRELGLEVQPADPEN------YVPRFASDLDLSD 250
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A + + ++P+ ++AAA+Y A L +++ TQ ++ V ++EVT+R
Sbjct: 251 ETERRARSLLSTAKESGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIR 310
Query: 307 KVYKELLENWDD 318
Y ELLE D+
Sbjct: 311 NRYHELLEAEDN 322
>gi|448355065|ref|ZP_21543819.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448360186|ref|ZP_21548828.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445636409|gb|ELY89571.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445640136|gb|ELY93226.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 326
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLDLSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARALLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|448366242|ref|ZP_21554496.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445654851|gb|ELZ07702.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 326
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLDLSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARALLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|448399559|ref|ZP_21570819.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445668576|gb|ELZ21203.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 319
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 130 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L + K +
Sbjct: 190 IPRSLEEVTSVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVGKDVE 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + ++ + ++P +AAAIY A L D+ Q + + T VT+R Y
Sbjct: 247 TKAIEIIDQTTDQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRY 306
Query: 310 KELLENWD 317
+E LE D
Sbjct: 307 REQLEAID 314
>gi|448466721|ref|ZP_21599226.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445813581|gb|EMA63558.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 336
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 2/180 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + +GL + D A LF S + LR RS+E A A + A R A RT
Sbjct: 158 AYTEIRRLTGAMGLPDSVRDAACALFDSAQSESLLRGRSLEGFAAACVYVACRTADVART 217
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ E+ A + E + L L PI ++PRF + L + + A
Sbjct: 218 VGEVCAEAKATEAEHRAAFDAMNRELGL--PIAPTGPGEYLPRFASELDCDADVERRAGE 275
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ + + + RNP+ ++AA +Y A + TQ E V +T VT+R+ Y +L E
Sbjct: 276 LADRAVEEGIANGRNPVGVAAACLYTAARELGADCTQQEAADVADVTPVTVRRTYVDLTE 335
>gi|448340358|ref|ZP_21529331.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445630664|gb|ELY83925.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 324
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 111/200 (55%), Gaps = 11/200 (5%)
Query: 124 TSSSVMMDNLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
+S + NL+ A+ +I +AS LGL + A L+R L RS+EA+ATA L
Sbjct: 126 SSKNAQERNLKQAFGEIERMASALGLPKPCRETAGVLYRRAVDEDLLPGRSIEAMATACL 185
Query: 183 VQAIREAQEPRTL---QEISIAANVPQKEIGKYIKI-LGEALQLSQPINSNSIAVHMPRF 238
A R+ PRTL + +S +P + +Y+ LG ++ + PI+ ++P++
Sbjct: 186 YAAARQHGTPRTLVAFESVSRVEKLPVQRAYRYLSSELGLRIEPADPIH------YLPQY 239
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
+ L+++ A+ LA I E + R+P ++AAAIY A +L ++R TQA + + T
Sbjct: 240 ASALEVSDDAERLAREILEAAKAHDLHSGRSPAGLAAAAIYGAARLTNERVTQATVGEET 299
Query: 299 GLTEVTLRKVYKELLENWDD 318
G++ VT+R Y+ELL+ +++
Sbjct: 300 GVSSVTVRNRYRELLDAYEE 319
>gi|289583194|ref|YP_003481660.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448283340|ref|ZP_21474616.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532747|gb|ADD07098.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445574256|gb|ELY28759.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 349
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 104/188 (55%), Gaps = 11/188 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L + R+A
Sbjct: 161 NLKQALGEIDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAG 220
Query: 191 EPRTLQEISIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNK 246
PR+L EI+ + V + EI + I+ LG +Q + P++ ++PRF + L L+
Sbjct: 221 TPRSLDEIAGVSRVEKDEIARTYRYVIRELGLEVQPADPVS------YVPRFASDLDLSD 274
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A + E + ++P+ ++AAA+Y L +++ TQ ++ +V ++EVT+R
Sbjct: 275 ETERRARQLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEVTIR 334
Query: 307 KVYKELLE 314
Y ELLE
Sbjct: 335 NRYHELLE 342
>gi|448419798|ref|ZP_21580642.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674712|gb|ELZ27249.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 352
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 103/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+ + A R A
Sbjct: 163 NLKQALGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAG 222
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EIS + V + E+ + + + A +LS + ++PRF + L L+ A++
Sbjct: 223 VPRSLDEISEVSRVEKSEVARTYRYI--ARELSLEVKPADPEQYVPRFGSELGLSDEAKM 280
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 281 RARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRYH 340
Query: 311 ELLE 314
ELLE
Sbjct: 341 ELLE 344
>gi|330833963|ref|YP_004408691.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
gi|329566102|gb|AEB94207.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
Length = 305
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 104/189 (55%), Gaps = 2/189 (1%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
SS+ + +A ++ + ++LGL + D ++R +R RS+E++ AA+ +
Sbjct: 110 SSIDRNLAQAMNELERIGNLLGLPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYAS 169
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R + RTL EI+ +KE+ + ++L L + P++ ++ R +LL L+
Sbjct: 170 CRRMKIARTLDEIAQYTKANRKEVARCYRLLLRELNVGVPVSDPK--DYVTRIGSLLGLS 227
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
++ LA I + N ++P ++AAAIY+A L ++R+TQ EI +V G+TEVT+
Sbjct: 228 GASMKLAAEILDKAKNVGLTAGKDPAGLAAAAIYIAALLNEERRTQKEIAQVAGVTEVTV 287
Query: 306 RKVYKELLE 314
R YKEL++
Sbjct: 288 RNRYKELIQ 296
>gi|448638606|ref|ZP_21676456.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445763385|gb|EMA14584.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
Length = 286
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 4/191 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
SS + + A+ +I + S + L I D A LF + L+ R++E A AA+
Sbjct: 99 SSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQNEDLLQGRTLEGFAAAAIYA 158
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQ 243
R RT+ E+ A Q E+ L L L + PI+ ++PRF T L
Sbjct: 159 TCRTEGVARTVDELCTVAKATQAELRAAYDALNRELGLPTGPIDPRE---YVPRFATTLD 215
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L + + A + + ++ + RNP ++AA +Y A Q +D TQAE + +T V
Sbjct: 216 LPTAVRQRAEQLVDEAQDRGLVSGRNPAGVAAACLYTAAQEQDVALTQAEAAETADVTPV 275
Query: 304 TLRKVYKELLE 314
TLR Y EL E
Sbjct: 276 TLRGTYTELQE 286
>gi|388583858|gb|EIM24159.1| TFIIB-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 336
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 124/313 (39%), Gaps = 46/313 (14%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQN---DGVDEDPFQPTGF 81
CG CG V+ ++ + A D D PS N DGVDE F
Sbjct: 41 CGDCGLVLGDKVVDTRSEWRTFANDE------GDDPSRVGAANNPLLDGVDE-------F 87
Query: 82 ITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIID 141
T S S +G EL+R ++ S+ L A+ I
Sbjct: 88 ETMIS------------SRDGNTGISRELQR------ATAKSSHGRSERGLLNAFRDISS 129
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+A + L I D A QL++ LR +S +A+ A + A R+A PRT +E+
Sbjct: 130 MADQISLPRSIADIAKQLYKRVDEEKLLRGKSTDAIIAACIFIACRQAGVPRTFKEVWGL 189
Query: 202 ANVPQKEIGKYIKILGEALQLSQPINS--------NSIAVH----MPRFCTLLQLNKSAQ 249
VP+K IG+ K+L A + P + N+I M R+C L L Q
Sbjct: 190 TRVPKKVIGQCFKVLERAFGSNSPSMTPGVDTPTLNNIQSGPEDLMARYCNHLNLPVWLQ 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + R+PI+++A IY A L K+ +EI + G+ + T+R Y
Sbjct: 250 SGAVDVAIAAREHGVLAGRSPITVAATCIYFASALFGHPKSASEIGNIAGVGDSTIRSAY 309
Query: 310 KELLENWDDLLPS 322
K L +L S
Sbjct: 310 KILFNEKQPVLAS 322
>gi|296420282|ref|XP_002839704.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635898|emb|CAZ83895.1| unnamed protein product [Tuber melanosporum]
Length = 346
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 125/317 (39%), Gaps = 50/317 (15%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CGSCG V+ +R + + D D +DP +
Sbjct: 41 CGSCGLVLGDRIVDTRSEWRTFSND-------------------DQAGDDPSRVGDAANP 81
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
F L + L S++ G EL R + T S+ + L AY +I
Sbjct: 82 F----LNGAQLETTISYTPGGAGRELHRA----QNKTAGDKSTKGL--LAAYKEIGAFCD 131
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
+ + + D A QLF+ + + EA+ + A R+ Q PRT +EI V
Sbjct: 132 SINIQKVVSDAAKQLFKIVDDHKAFKGKPQEAIIAGCIFIACRQCQVPRTFREIFALTKV 191
Query: 205 PQKEIGKYIKILGE--ALQLSQPIN-------------------SNSIAVHMPRFCTLLQ 243
P+KEIG+ K L + A Q S+ ++ S M R+C L
Sbjct: 192 PKKEIGRVFKALEKFFAAQDSKKMDEITKSGGIVDDSQQYKTTSSTKATELMIRYCNNLN 251
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L ++ +A + + R+PIS +AA IY+ L + KT EI + G+++
Sbjct: 252 LTQNCTTIAQELADRAATIGTLAGRSPISSAAACIYMVSYLMKQPKTAKEISTIAGVSDG 311
Query: 304 TLRKVYKELLENWDDLL 320
T+R YK L + + L+
Sbjct: 312 TIRNAYKHLYTDRNKLI 328
>gi|126466031|ref|YP_001041140.1| transcription initiation factor IIB [Staphylothermus marinus F1]
gi|126014854|gb|ABN70232.1| Transcription initiation factor IIB (TFIIB) [Staphylothermus
marinus F1]
Length = 309
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 14/232 (6%)
Query: 99 SSHSFSGQLAELERTFELLS----SSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICD 154
S+ +G+ E R E+ + + SS+ + +A ++ ++ L L ++ +
Sbjct: 83 SNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQLNLPRNVKE 142
Query: 155 HAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIK 214
A +++R +R RS+E++ AA+ A RE + PRTL EI+ +K+I + +
Sbjct: 143 EAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKIPRTLDEIAKHTKSSRKDIARCYR 202
Query: 215 ILGEAL----QLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNP 270
+L + L Q S PI+ +PR L L+ S A I + +P
Sbjct: 203 LLLKELDIKVQTSDPID------FIPRIAHALNLSGSVMKKAAEILHRARSLGVTAGNDP 256
Query: 271 ISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPS 322
++AAA+Y+A QL +R+TQ EI V G+TEVT+R YKEL + LP+
Sbjct: 257 AGLAAAAVYIAAQLSGERRTQKEIAHVAGVTEVTVRNRYKELAKELGIDLPT 308
>gi|424813973|ref|ZP_18239151.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
gi|339757589|gb|EGQ42846.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
Length = 360
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 10/175 (5%)
Query: 144 SILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAAN 203
S L L + + +L+ +R RS+E++ +A + R+ PRTL EIS A+
Sbjct: 179 SNLNLPESVHEETARLYEKSVDQGLVRGRSMESIISAIIYIVARKQGTPRTLDEISDASG 238
Query: 204 VPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVV 259
+ ++EIG+ + + L L ++P + ++PRF LQL+ Q A I +
Sbjct: 239 IEKREIGRAYRYVARELGLRILPAKPQD------YVPRFAGKLQLSGEVQARARQILKEA 292
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ + + P ++AAA+Y+A LE +++TQ E+ V G+TEVT+R YKEL E
Sbjct: 293 RERDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTIRNRYKELAE 347
>gi|448718282|ref|ZP_21703005.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445784444|gb|EMA35255.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 325
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 136 NLKYALSEIDRMVSALGVPNPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKED 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L + K +
Sbjct: 196 IPRSLEEVTAVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVGKDIE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L D+ Q + + T VT+R Y
Sbjct: 253 TKAVEIIDRTTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRY 312
Query: 310 KELLENWD 317
+E LE D
Sbjct: 313 REQLEAID 320
>gi|284176274|ref|YP_003406551.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284017931|gb|ADB63878.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 318
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 15/225 (6%)
Query: 99 SSHSFS----GQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDIC 153
+ HS S GQL L E + + NL+ L ID + S LG+ +
Sbjct: 97 NGHSMSADKQGQLHRLRVWQERIRTKNAGER------NLKYALSEIDRMVSALGVPKPVK 150
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
+ A ++R +R RS+E +AT+AL A R+ PR+L+E++ + V Q+EIG+
Sbjct: 151 ETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTSVSRVDQREIGRTY 210
Query: 214 KILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPIS 272
+ + + L ++ +P N +PRFC+ L + K + A I + ++ + ++P
Sbjct: 211 RYIADELDINLEPTNPRQF---VPRFCSELDVGKDVETKAVEIIDRTTDQGLHSGKSPTG 267
Query: 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+AAAIY A L D+ Q + T VT+R Y+E LE D
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYREQLEAID 312
>gi|15789590|ref|NP_279414.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235302|ref|YP_001688502.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195247|sp|Q9HSB3.1|TF2B6_HALSA RecName: Full=Transcription initiation factor IIB 6; Short=TFIIB 6
gi|10579944|gb|AAG18894.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726368|emb|CAP13149.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 319
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 105/188 (55%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+ + A R+A
Sbjct: 131 NLKQALGEIDRMASALGLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQAG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L P + S ++PRF + L L+ A
Sbjct: 191 VPRSLDEIADVSRVEKAEIARTYRYVVRELGLEVAPADPES---YVPRFASDLGLSDEAS 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + +K + ++P+ ++AAA+Y A L +++ TQA++ +V ++EVT+R Y
Sbjct: 248 HRARELLKTAKDKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAKVSEVADISEVTIRNRY 307
Query: 310 KELLENWD 317
ELLE D
Sbjct: 308 HELLEAED 315
>gi|448591526|ref|ZP_21651014.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445733500|gb|ELZ85069.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 331
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 103/187 (55%), Gaps = 3/187 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +ATA+L A R A
Sbjct: 142 NLKQALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMAD 201
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E+ + V + E+ + + + L+L I ++PRF + L L+ A+
Sbjct: 202 TPRSLDELEKVSRVEKMELTRTYRYIVRELKLE--IKPADPEQYVPRFASELGLSDEAER 259
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R YK
Sbjct: 260 QARELLRGAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSEVADISEVTIRNRYK 319
Query: 311 ELLENWD 317
ELLE D
Sbjct: 320 ELLEVQD 326
>gi|429191039|ref|YP_007176717.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448327395|ref|ZP_21516723.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
gi|429135257|gb|AFZ72268.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445608493|gb|ELY62332.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
Length = 326
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++T+ + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L+L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLELSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARALLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|448608903|ref|ZP_21660182.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445747280|gb|ELZ98736.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 331
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 3/192 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +ATAAL A R A
Sbjct: 142 NLKQALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMAD 201
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E+ + V + E+ + + + L+L I ++PRF + L L+ A+
Sbjct: 202 TPRSLDELEKVSRVDKMELTRTYRYIVRELKLE--IKPADPEQYVPRFASELDLSDEAER 259
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+Y A L +++ TQ+++ +V ++EVT+R YK
Sbjct: 260 QARTLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSEVADISEVTIRNRYK 319
Query: 311 ELLENWDDLLPS 322
ELLE D L +
Sbjct: 320 ELLEVQDGSLAA 331
>gi|448301306|ref|ZP_21491299.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445584042|gb|ELY38366.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 325
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R L RS+E +ATA+L + R+A
Sbjct: 137 NLKQALGEIDRMASALGLPESVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L +P + ++PRF + L L+ +
Sbjct: 197 TPRSLDEISAVSRVEKDEVARTYRYVVRELGLEVKPADPEQ---YVPRFASDLDLSDETE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + K + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R Y
Sbjct: 254 RRARSLLSTAKEKGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVANISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|448324011|ref|ZP_21513453.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619909|gb|ELY73423.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 323
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 134 NLKYALSEIDRMVSALGVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKED 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++K +
Sbjct: 194 IPRSLEEVTAVSRVDQREIGRTYRYIADELGINLEPTNPRQF---VPRFCSELDVDKDVE 250
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + K + ++P +AAAIY A L D+ Q + + T VT+R Y
Sbjct: 251 TKAIDIIDETTEKGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRY 310
Query: 310 KELLENWD 317
+E L+ D
Sbjct: 311 REQLDAID 318
>gi|110667127|ref|YP_656938.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385802543|ref|YP_005838943.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109624874|emb|CAJ51283.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728035|emb|CCC39156.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 366
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 104/187 (55%), Gaps = 3/187 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LGL ++ + A ++R L RS+E ++T+ + A R A
Sbjct: 177 NLKQALGEVDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAG 236
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + VP+ E+ + + + A +LS + ++PRF + L L+ + +
Sbjct: 237 VPRSLDEIAEVSRVPKSEVARTYRYI--ARELSLEVKPADPEQYVPRFASELGLSDESTL 294
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 295 RARQLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRYH 354
Query: 311 ELLENWD 317
ELLE D
Sbjct: 355 ELLEAKD 361
>gi|424811965|ref|ZP_18237205.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756187|gb|EGQ39770.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
Length = 358
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 10/171 (5%)
Query: 144 SILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAAN 203
S L L + + +L+ +R RS+E++ +A L R+ PRTL EIS A+
Sbjct: 177 SNLNLPESVHEEVARLYEKAVDQGLVRGRSMESIISALLYIVARKQGTPRTLDEISDASG 236
Query: 204 VPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVV 259
+ ++EIG+ + + L L ++P + ++PRF LQL+ Q A +I E
Sbjct: 237 IEKREIGRAYRYVARELGLRILPAKPQD------YVPRFAGKLQLSGEVQARARNILEEA 290
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
K + + P ++AAA+Y+A LE +++TQ E+ V G+TEVT+R YK
Sbjct: 291 REKDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTIRNRYK 341
>gi|448299195|ref|ZP_21489208.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
gi|445588729|gb|ELY42971.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
Length = 326
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++T+ + A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLDLSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARGLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|378756507|gb|EHY66531.1| transcription initiation factor IIB [Nematocida sp. 1 ERTm2]
Length = 308
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 16/224 (7%)
Query: 116 LLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDY------------DICDHAFQLFRDC 163
L+SS + S S+ +++ L+ + A I GL+ I D A +F+
Sbjct: 78 LISSGSGLASYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLSKTISDAAKYVFKTV 137
Query: 164 CSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS 223
+ L+ +++E + A + A R+A RT +E+SI VP+KEIG+ K + +
Sbjct: 138 ENKKVLKGKNLEGIGAACIYIACRQAGFVRTFKEVSILTAVPKKEIGRCYKAIFPHIDKL 197
Query: 224 QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQ 283
+++ I + RFC+ L L+ Q +A I + ++P SI+AA IYL
Sbjct: 198 AVVSTEDI---VARFCSDLTLSIDIQKVALTISQRAQAIGCIAGKSPDSIAAAIIYLITY 254
Query: 284 L-EDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTP 326
L ++K Q I VT +T+VT++ YKELL +L+P P
Sbjct: 255 LFPMQKKIQKNIQIVTNVTDVTIKNTYKELLPYRYELVPEGIVP 298
>gi|433421758|ref|ZP_20405837.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|432198809|gb|ELK55052.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
Length = 318
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 3/189 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+AL A R A
Sbjct: 129 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAG 188
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + EI + + + +LS I ++PRF + L L+ A+
Sbjct: 189 TPRSLDEITSVSRVEKDEIARTYRYV--VRELSLEIKPADPEQYVPRFASELGLSDEAER 246
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 247 QARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRYH 306
Query: 311 ELLENWDDL 319
ELLE ++L
Sbjct: 307 ELLEAEENL 315
>gi|242399568|ref|YP_002994993.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
gi|242265962|gb|ACS90644.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
Length = 272
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 4/182 (2%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+ S +GL +I + A L+R +R RS+E + +A L A R A PRTL EI
Sbjct: 94 MGSQIGLPRNIREIAALLYRKAVINRLVRGRSIEGMVSACLYAACRIANAPRTLDEIEDF 153
Query: 202 ANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVI 260
+ V +KEIG+ + L L L +P N V RF L + + + A I I
Sbjct: 154 SKVDKKEIGRSYRYLVRELNLKLRPTNPVDYVV---RFGDQLGVTEKTKRRAMRIVNQAI 210
Query: 261 NKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
+ + P I+AAAIY+A LE ++ TQ E+ +V +TEVT+R YKEL++ + +
Sbjct: 211 KMGLTSGKGPTGIAAAAIYIASLLEGEKMTQREVAEVARVTEVTVRNRYKELVDKLNIRI 270
Query: 321 PS 322
P+
Sbjct: 271 PT 272
>gi|448336885|ref|ZP_21525972.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627223|gb|ELY80548.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 319
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 130 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKED 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ A V Q+EIG+ + + + L ++ +P N +PRFC+ L ++ +
Sbjct: 190 IPRSLEEVTSVARVEQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVDTDVE 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L D+ Q + + T VT+R Y
Sbjct: 247 TKAIEIIDRTTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRY 306
Query: 310 KELLENWD 317
+E LE D
Sbjct: 307 REQLEAID 314
>gi|336254453|ref|YP_004597560.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338442|gb|AEH37681.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 320
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 128 NLKYALSEIDRMVSALGVPDPVKETASVIYRRALEKDLIRGRSIEGVATSALYTACRKED 187
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L + K +
Sbjct: 188 IPRSLEEVTSVSRVDQREIGRTYRYIADELGINLEPTNPRQF---VPRFCSELDVGKDVE 244
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L D+ Q + + T VT+R Y
Sbjct: 245 TKAVEIIDETTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRY 304
Query: 310 KELLENWD 317
+E LE D
Sbjct: 305 REQLEAID 312
>gi|429193443|ref|YP_007179121.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429137661|gb|AFZ74672.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 340
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 151 NLKYALSEIDRMVSALGVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKED 210
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++K +
Sbjct: 211 IPRSLEEVTAVSRVDQREIGRTYRYIADELGINLEPTNPRQF---VPRFCSELDVDKDVE 267
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + K + ++P +AAAIY A L D+ Q + + T VT+R Y
Sbjct: 268 TKAIDIIDETTEKGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRY 327
Query: 310 KELLENWD 317
+E L+ D
Sbjct: 328 REQLDAID 335
>gi|110667584|ref|YP_657395.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803024|ref|YP_005839424.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625331|emb|CAJ51753.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728516|emb|CCC39669.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 369
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 108/189 (57%), Gaps = 5/189 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R L RS+E ++TAAL A R AQ
Sbjct: 172 NLKQALGEIDRMASALGLPESVRETASVIYRRALDEDLLPGRSIEGISTAALHAAARMAQ 231
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR++ E++ + V + E + + + L L QP + A ++PRF + L++ K +
Sbjct: 232 VPRSIDEVARVSRVDEDEFERAYRYIVRELSLEIQPADP---AEYVPRFASDLEVPKETE 288
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + + ++P+ ++AAA+Y + QL + TQA++ +VT ++EVT+R Y
Sbjct: 289 RTARELLESAKRQNVHSGKSPVGLAAAALYASAQLTNDELTQADVSEVTDISEVTIRNRY 348
Query: 310 KELLENWDD 318
+ELLE WD+
Sbjct: 349 QELLEAWDN 357
>gi|448359569|ref|ZP_21548219.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445642204|gb|ELY95273.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 317
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 128 NLKYALSEIDRMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEG 187
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++K +
Sbjct: 188 IPRSLEEVTSVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVSKEVE 244
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I +K + ++P +AAAIY A L D+ Q + T VT+R Y
Sbjct: 245 TRAVEIINQTTDKGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRY 304
Query: 310 KELLENWD 317
+E L+ D
Sbjct: 305 REQLDAID 312
>gi|433639269|ref|YP_007285029.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377441|ref|ZP_21560137.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433291073|gb|AGB16896.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655385|gb|ELZ08230.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 326
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 106/190 (55%), Gaps = 5/190 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS +GL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASAVGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ ++
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLDLSDESE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 254 HRARSLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 313
Query: 310 KELLENWDDL 319
ELLE D +
Sbjct: 314 HELLEAEDSI 323
>gi|359417944|ref|ZP_09209980.1| transcription initiation factor IIB, partial [Candidatus
Haloredivivus sp. G17]
gi|358031705|gb|EHK00573.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 201
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
Query: 144 SILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAAN 203
S L L + + +L+ +R RS+E++ +A + R+ PRTL EIS A+
Sbjct: 20 SNLNLPESVHEETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGTPRTLDEISDASG 79
Query: 204 VPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVV 259
+ ++EIG+ + + L L ++P + ++PRF LQL+ Q A +I +
Sbjct: 80 IEKREIGRAYRYVARELGLRILPAKPQD------YVPRFAGKLQLSGEVQARARNILKEA 133
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENW 316
+ + + P ++AAA+Y+A LE +++TQ E+ V G+TEVT+R YKEL E
Sbjct: 134 RERDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTIRNRYKELAEKL 190
>gi|18977059|ref|NP_578416.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|18892698|gb|AAL80811.1| transcription initiation factor IIB chain b homolog [Pyrococcus
furiosus DSM 3638]
Length = 283
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 92/176 (52%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ ++ +L L + + A L+R+ R +E A + R + PRTL E
Sbjct: 98 ELRRLSGMLKLPKYVEEEAAYLYREAAKRGLTRRIPIETTVAACIYATCRLFKVPRTLNE 157
Query: 198 ISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
I+ + +KEI K +++ L L+ + ++ +F L+L++ + I
Sbjct: 158 IASYSKTEKKEIMKAFRVIVRNLNLTPKMLLARPTDYVDKFADELELSERVRRRTVDILR 217
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELL 313
+ + +NP+S+ AAA+Y+A LE +R++Q EI +VTG++E+T+R YKEL+
Sbjct: 218 RANEEGITSGKNPLSLVAAALYIASLLEGERRSQKEIARVTGVSEMTVRNRYKELV 273
>gi|70999680|ref|XP_754557.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|66852194|gb|EAL92519.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|159127570|gb|EDP52685.1| transcription initiation protein [Aspergillus fumigatus A1163]
Length = 422
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 129/319 (40%), Gaps = 50/319 (15%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCG V+A+R+ H + + D +D PS N ++ D +
Sbjct: 115 TVCGSCGLVLADREIDMHSEWRTFSNDDQ----NNDDPSRVGDATNPLLNGDQLET---- 166
Query: 83 TAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDV 142
+ + SG+ EL R SS + + L AY +I +
Sbjct: 167 ---------------QIASGGSGRARELYRAQNKQSSEKANKAL------LAAYKEIGAL 205
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+ ++ D A LF+ A + +S E + + A R+ + PRT EI
Sbjct: 206 CDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVT 265
Query: 203 NVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP-------------------RFCTL 241
V +KEIG+ K L + Q + IN+ + +P RFC L
Sbjct: 266 KVTRKEIGRIYKALEKFFTAQNLERINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNL 325
Query: 242 LQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 301
L L +++ + + V R+P+SI AA IY+A L K+ EI +V ++
Sbjct: 326 LDLPYQVTSVSSALSDRVTTMGDLAGRSPLSIVAACIYMASYLMGHGKSAKEISQVAHVS 385
Query: 302 EVTLRKVYKELLENWDDLL 320
+ T+R YK+L + L+
Sbjct: 386 DGTIRGAYKQLYAERERLI 404
>gi|145232671|ref|XP_001399760.1| transcription initiation factor IIB [Aspergillus niger CBS 513.88]
gi|134056679|emb|CAK37672.1| unnamed protein product [Aspergillus niger]
gi|358365509|dbj|GAA82131.1| transcription initiation protein [Aspergillus kawachii IFO 4308]
Length = 351
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 131/323 (40%), Gaps = 50/323 (15%)
Query: 19 GRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQP 78
G T CGSCG V+A+R+ H + + D Q ND DP +
Sbjct: 40 GSHETVCGSCGLVLADREIDMHSEWRTFSNDD---------------QNND----DPSRV 80
Query: 79 TGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ 138
+ L L + + SG++ +L R SS + + L AY +
Sbjct: 81 GDAMNPL----LNGDQLETQIASGGSGRVRDLYRAQNKQSSEKANKAL------LAAYKE 130
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I + + ++ D A LF+ A + +S + + + A R+ + PRT EI
Sbjct: 131 IGALCDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEI 190
Query: 199 SIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP-------------------R 237
V +KEIG+ K L + Q + IN+ + +P R
Sbjct: 191 FAVTKVTRKEIGRIYKALEKFFTAQNLERINAVVSSGGVPDPNDTYTATTSTKPSDLCNR 250
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC LL L +++ + + V R+P+SI AA IY+A L K+ EI +V
Sbjct: 251 FCNLLDLPFQVTSVSSALSDRVTTMGDLAGRSPLSIVAACIYMASYLMGHGKSAKEISQV 310
Query: 298 TGLTEVTLRKVYKELLENWDDLL 320
+++ T+R YK+L + L+
Sbjct: 311 AHVSDGTIRGAYKQLYAERERLI 333
>gi|448346035|ref|ZP_21534924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633968|gb|ELY87155.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 319
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 130 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKED 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ A V Q+EIG+ + + + L ++ +P N +PRFC+ L ++ +
Sbjct: 190 IPRSLEEVTSVARVEQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVDTDVE 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L D+ Q + + T VT+R Y
Sbjct: 247 TKAIEIIDRTTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRY 306
Query: 310 KELLENWD 317
+E LE D
Sbjct: 307 REQLEAID 314
>gi|392568456|gb|EIW61630.1| transcription initiation factor IIB [Trametes versicolor FP-101664
SS1]
Length = 351
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 123/296 (41%), Gaps = 38/296 (12%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CG+CG V+ +R + A D D PS G DP
Sbjct: 52 CGTCGLVLGDRIVDTRSEWRTFANDE------GDDPS------RVGAASDP--------- 90
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
L+ L ++ SF + + R EL +++ S +S + L+A+ I
Sbjct: 91 -----LMEGMEQLDTTISFRDGGSGIAR--ELQRAASRSAASRSERNLLQAFRDIAGWCD 143
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
L I D A QL++ LR + +EA+ A + A R+A PRT +EI +V
Sbjct: 144 QFSLPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHV 203
Query: 205 PQKEIGKYIKILGEAL----------QLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+K +G+ K L +A L+ P + + R+C L L + Q +
Sbjct: 204 SKKVLGQCYKALEQAFNLTPGASQDRHLNAPSGTTGAEDLLVRYCNHLDLPPNVQPICGD 263
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
I R+P+SI+ AIY C L DK K+ EI V G++E T++ VY+
Sbjct: 264 IIVKARELGIADGRSPVSIAGGAIYFTCCLLDKPKSVKEISTVAGVSEGTIKLVYR 319
>gi|448363001|ref|ZP_21551605.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647623|gb|ELZ00597.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 317
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 128 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEG 187
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++K+ +
Sbjct: 188 IPRSLEEVTSVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVSKAVE 244
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L D+ Q + T VT+R Y
Sbjct: 245 TKAVDIIEQTTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRY 304
Query: 310 KELLENWD 317
+E L+ D
Sbjct: 305 REQLDAID 312
>gi|435848670|ref|YP_007310920.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674938|gb|AGB39130.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 319
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 130 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++K +
Sbjct: 190 IPRSLEEVTAVSRVDQREIGRTYRYVADELDINLEPTNPRQF---VPRFCSELDVDKDVE 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + N+ + ++P +AAAIY A L ++ Q + T VT+R Y
Sbjct: 247 SKAIEIIDETTNQGLHSGKSPTGFAAAAIYAAGLLCEETIPQRAVADTAQTTVVTVRNRY 306
Query: 310 KELLENWD 317
+E LE D
Sbjct: 307 REQLEAID 314
>gi|118577046|ref|YP_876789.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195567|gb|ABK78485.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 93/178 (52%), Gaps = 2/178 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ ++ + L + + + A ++R +R RS+ AL +AL A R+ PR
Sbjct: 122 AFSELNRLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTATPRN 181
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
L+++ AAN+ +K+I + ++L + L L P+ ++SI + R + + + + + A
Sbjct: 182 LKDVEEAANIKRKDIARCYRLLVKELDLRMPV-TDSIQC-VARISSHIGIAEKTKRYAVV 239
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ + ++P+ ++AAA+YL+C + KTQ +I +TEVT+R YK L
Sbjct: 240 VLKEAQKHEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIADAANVTEVTIRNRYKGL 297
>gi|326482199|gb|EGE06209.1| transcription initiation factor IIB [Trichophyton equinum CBS
127.97]
Length = 352
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 132/323 (40%), Gaps = 57/323 (17%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCG V+A+R+ H + + D Q ND DP
Sbjct: 44 TICGSCGLVLADREIDPHSEWRTFSNDD---------------QNND----DP------- 77
Query: 83 TAFSAWSLVPSPLF----LRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ 138
S +PL L + SF A R+ EL + + ++ + L AY +
Sbjct: 78 ---SRVGDASNPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTENTNKALLAAYKE 131
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I + + ++ D A LF+ A + +S + + + A R+ + PRT EI
Sbjct: 132 IGSLCDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEI 191
Query: 199 SIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP-------------------R 237
V +KEIG+ K L + Q + INS + +P R
Sbjct: 192 FAVTRVSKKEIGRIYKALEKFFTAQNLERINSVVSSGGVPDPNDSYTGTTSTKPSDLCNR 251
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC LL L +++ + + V + R+P+SI AA+IY+A L K+ EI V
Sbjct: 252 FCNLLDLPFQVTNVSSLLADRVTSMGDLAGRSPLSIVAASIYMASFLMGHGKSAKEISGV 311
Query: 298 TGLTEVTLRKVYKELLENWDDLL 320
+++ T+R YK+L + L+
Sbjct: 312 AHVSDGTIRGAYKQLYAERERLI 334
>gi|448604552|ref|ZP_21657719.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743961|gb|ELZ95441.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 331
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 3/190 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +ATAAL + R A
Sbjct: 143 NLKQALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAS 202
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E+ + V + E+ + + + L+L I ++PRF + L L+ ++
Sbjct: 203 TPRSLDELEKVSRVDKMELTRTYRYIVRELKLE--IKPADPEQYVPRFASELGLSDESER 260
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R YK
Sbjct: 261 QARQLLRDAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYK 320
Query: 311 ELLENWDDLL 320
ELLE D L
Sbjct: 321 ELLEVQDGLF 330
>gi|448352225|ref|ZP_21541016.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|448365467|ref|ZP_21553847.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445631605|gb|ELY84834.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445655006|gb|ELZ07853.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 317
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 128 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEG 187
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++K+ +
Sbjct: 188 IPRSLEEVTSVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVSKAVE 244
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L D+ Q + T VT+R Y
Sbjct: 245 TKAVDIIEQTTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRY 304
Query: 310 KELLENWD 317
+E L+ D
Sbjct: 305 REQLDAID 312
>gi|345571434|gb|EGX54248.1| hypothetical protein AOL_s00004g281 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 135/358 (37%), Gaps = 62/358 (17%)
Query: 25 CGSCGRVIAERQCQNHHLFHI-----RAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPT 79
CGSCG V+ +R + + D P + S P + Q + G+ F
Sbjct: 58 CGSCGLVLGDRTIDTRSEWRTFSNDDQGNDDPSRVGDSANPLLNGNQLDTGI---SFSDG 114
Query: 80 GFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQI 139
G SG+ +L R ++ ++ S L AY +I
Sbjct: 115 G-----------------------SGRARDLHRAQNKVTHDKSTKSL------LAAYKEI 145
Query: 140 IDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEIS 199
L ++ D A QL++ A + + E + + A R+ PRT +EI
Sbjct: 146 GAFCDSTNLQKNVADTAKQLYKSVDDAKAFKGKPQEVIIAGCIFIACRKCNVPRTFREIF 205
Query: 200 IAANVPQKEIGKYIKIL-------GEALQLSQPINSNSIA-------------VH--MPR 237
VP+KEIG+ K L GEA +++ ++ IA H M R
Sbjct: 206 AITKVPKKEIGRVFKALEKFFSQQGEAT-VAEIVSGGGIANENAGYTSTTSTKAHDLMIR 264
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC L L + ++ + E K R+PIS +AA IY+ L + K+ EI V
Sbjct: 265 FCNNLGLTHNLIYISQELAERAAQKGTLAGRSPISSAAACIYMISHLMRQPKSAKEISAV 324
Query: 298 TGLTEVTLRKVYKELLENWDDLLPSNY--TPAVPPEKAFPTTTITSGRAPTVKVDSGE 353
G+++ T++ YK L L+ + + A T G AP G+
Sbjct: 325 AGVSDGTIKTAYKLLYNERTALVDPKWIENGKATEQSAITQENKTQGGAPNTGAQEGK 382
>gi|448411807|ref|ZP_21576163.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669741|gb|ELZ22349.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 329
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 99/194 (51%), Gaps = 3/194 (1%)
Query: 125 SSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALV 183
S S NL+ L ID +AS LG+ D + A ++R + RS+EA+AT +L
Sbjct: 135 SQSAQDRNLKQALGEIDRMASALGIPKDARETASVIYRRALDEELIPGRSIEAMATGSLY 194
Query: 184 QAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQ 243
R+A PRTL E+ + V +KE + + + L+L+ + A ++PR + L
Sbjct: 195 AGARQAGVPRTLDELETVSRVDRKEFARAYRYIARELELA--MEPTDPAQYVPRLVSDLD 252
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L + + A + E + + +NP+ ++AAAIY A +L + TQ E+ ++ V
Sbjct: 253 LPEETKQRAVELLEAGKREAVHSGKNPVGLAAAAIYAAGRLTNVDVTQHEVADAADVSAV 312
Query: 304 TLRKVYKELLENWD 317
T+R Y ELL+ D
Sbjct: 313 TIRDRYTELLDAAD 326
>gi|393795800|ref|ZP_10379164.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 303
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 3/184 (1%)
Query: 132 NLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
N R A+ ++ + + L L + + ++R +R RS+ L A+L A R +
Sbjct: 118 NFRQAFSELDRLKTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTE 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL +++ + N+ +K+I + ++L L L P+ N + + R + L++ +
Sbjct: 178 TPRTLSDVANSINIKRKDIARCYRLLLRELDLKMPV-VNPVKC-ISRISSNAGLSEKTKR 235
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I + ++P+ ++AAA+YL+C + KTQ +I G+TEVT+R YK
Sbjct: 236 KAIEILDQAAKIELSAGKDPMGLAAAALYLSCVKNGEDKTQKDIAVAAGVTEVTIRNRYK 295
Query: 311 ELLE 314
L E
Sbjct: 296 GLKE 299
>gi|448393759|ref|ZP_21567818.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445663362|gb|ELZ16114.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 318
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 128 NLKYALSEIDRMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKED 187
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L + K +
Sbjct: 188 IPRSLEEVTSVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVGKDVE 244
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L D+ Q + T VT+R Y
Sbjct: 245 TKAVEIIDQTTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRY 304
Query: 310 KELLENWD 317
+E LE D
Sbjct: 305 REQLEAID 312
>gi|327307312|ref|XP_003238347.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
gi|326458603|gb|EGD84056.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
Length = 352
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 131/323 (40%), Gaps = 57/323 (17%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCG V+A+R+ H + + D Q ND DP
Sbjct: 44 TICGSCGLVLADREIDPHSEWRTFSNDD---------------QNND----DP------- 77
Query: 83 TAFSAWSLVPSPLF----LRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ 138
S +PL L + SF A R+ EL + + ++ L AY +
Sbjct: 78 ---SRVGDASNPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTEKTNKALLAAYKE 131
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I + + ++ D A LF+ A + +S + + + A R+ + PRT EI
Sbjct: 132 IGSLCDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEI 191
Query: 199 SIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP-------------------R 237
V +KEIG+ K L + Q + INS + +P R
Sbjct: 192 FAVTRVSKKEIGRIYKALEKFFTAQNLERINSVVSSGGVPDPNDAYTGTTSTKPSDLCNR 251
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC LL L +++ + + V + R+P+SI AA+IY+A L K+ EI V
Sbjct: 252 FCNLLDLPFQVTNVSSLLADRVTSMGDLAGRSPLSIVAASIYMASFLMGHGKSAKEISGV 311
Query: 298 TGLTEVTLRKVYKELLENWDDLL 320
+++ T+R YK+L + L+
Sbjct: 312 AHVSDGTIRGAYKQLYAERERLI 334
>gi|329766227|ref|ZP_08257785.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137286|gb|EGG41564.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 303
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 3/184 (1%)
Query: 132 NLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
N R A+ ++ + + L L + + ++R +R RS+ L A+L A R +
Sbjct: 118 NFRQAFSELDRLKTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTE 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL +++ + N+ +K+I + ++L L L P+ N + + R + L++ +
Sbjct: 178 TPRTLSDVANSINIKRKDIARCYRLLLRELDLKMPV-VNPVKC-ISRISSNAGLSEKTKR 235
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I + ++P+ ++AAA+YL+C + KTQ +I G+TEVT+R YK
Sbjct: 236 KAIEILDQAAKIELSAGKDPMGLAAAALYLSCVKNGEDKTQKDIAVAAGVTEVTIRNRYK 295
Query: 311 ELLE 314
L E
Sbjct: 296 GLKE 299
>gi|322369913|ref|ZP_08044475.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320550249|gb|EFW91901.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 320
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E ++T+ + A R+A
Sbjct: 131 NLKQALGEIDRMASALGLPDNVREMASVIYRRALNEDLLPGRSIEGVSTSCVYAAARQAG 190
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + E+ + + + L L +P + S ++PRF + L+L+ A+
Sbjct: 191 VPRSLDEITEVSRVDKSEVARTYRYVVRELSLEVKPADPES---YVPRFASGLELSDEAE 247
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAA+Y A L +++ TQAE+ V ++EVT+R Y
Sbjct: 248 HRARELLRNAKEQGVHSGKSPVGLAAAAVYAAALLTNEKTTQAEVSDVADISEVTIRNRY 307
Query: 310 KELLE 314
ELLE
Sbjct: 308 HELLE 312
>gi|315055443|ref|XP_003177096.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
gi|311338942|gb|EFQ98144.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
Length = 352
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 131/323 (40%), Gaps = 57/323 (17%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCG V+A+R+ H + + D Q ND DP
Sbjct: 44 TICGSCGLVLADREIDPHSEWRTFSNDD---------------QNND----DP------- 77
Query: 83 TAFSAWSLVPSPLF----LRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ 138
S +PL L + SF A R+ EL + + ++ L AY +
Sbjct: 78 ---SRVGDASNPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTEKTNKALLAAYKE 131
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I + + ++ D A LF+ A + +S + + + A R+ + PRT EI
Sbjct: 132 IGSLCDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEI 191
Query: 199 SIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP-------------------R 237
V +KEIG+ K L + Q + INS + +P R
Sbjct: 192 FAVTRVSKKEIGRIYKALEKFFTAQNLERINSVVSSGGVPDPNDAYTGTTSTKPSDLCNR 251
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC LL L +++ + + V + R+P+SI AA+IY+A L K+ EI V
Sbjct: 252 FCNLLDLPFQVTNVSSLLADRVTSMGDLAGRSPLSIVAASIYMASFLMGHGKSAKEISGV 311
Query: 298 TGLTEVTLRKVYKELLENWDDLL 320
+++ T+R YK+L + L+
Sbjct: 312 AHVSDGTIRGAYKQLYAERERLI 334
>gi|448624536|ref|ZP_21670484.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445749741|gb|EMA01183.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 331
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 3/190 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +ATAAL + R A
Sbjct: 143 NLKQALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAS 202
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E+ + V + E+ + + + L+L I ++PRF + L L+ ++
Sbjct: 203 TPRSLDELEKVSRVDKMELTRTYRYIVRELKLE--IKPADPEQYVPRFASELGLSDESER 260
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R YK
Sbjct: 261 QARQLLRDAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYK 320
Query: 311 ELLENWDDLL 320
ELLE D L
Sbjct: 321 ELLEVQDGLF 330
>gi|257389069|ref|YP_003178842.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171376|gb|ACV49135.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 327
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS +GL ++ + A ++R L RS+E ++TA++ A R+A
Sbjct: 138 NLKQALGEIDRMASAVGLPENVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAG 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI + V + EI + + + L L P + S ++PRF + L+L+ A+
Sbjct: 198 VPRSLDEIDEVSRVEKSEIARTYRYVVRELGLEVAPADPES---YVPRFASSLELSDEAE 254
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 255 HRARQLLQNAKEQGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 314
Query: 310 KELLE 314
ELLE
Sbjct: 315 HELLE 319
>gi|302508303|ref|XP_003016112.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|302659336|ref|XP_003021359.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
gi|291179681|gb|EFE35467.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|291185255|gb|EFE40741.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
Length = 338
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 131/323 (40%), Gaps = 57/323 (17%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCG V+A+R+ H + + D Q ND DP
Sbjct: 30 TICGSCGLVLADREIDPHSEWRTFSNDD---------------QNND----DP------- 63
Query: 83 TAFSAWSLVPSPLF----LRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ 138
S +PL L + SF A R+ EL + + ++ L AY +
Sbjct: 64 ---SRVGDASNPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTEKTNKALLAAYKE 117
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I + + ++ D A LF+ A + +S + + + A R+ + PRT EI
Sbjct: 118 IGSLCDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEI 177
Query: 199 SIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP-------------------R 237
V +KEIG+ K L + Q + INS + +P R
Sbjct: 178 FAVTRVSKKEIGRIYKALEKFFTAQNLERINSVVSSGGVPDPNDAYTGTTSTKPSDLCNR 237
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC LL L +++ + + V + R+P+SI AA+IY+A L K+ EI V
Sbjct: 238 FCNLLDLPFQVTNVSSLLADRVTSMGDLAGRSPLSIVAASIYMASFLMGHGKSAKEISGV 297
Query: 298 TGLTEVTLRKVYKELLENWDDLL 320
+++ T+R YK+L + L+
Sbjct: 298 AHVSDGTIRGAYKQLYAERERLI 320
>gi|397773185|ref|YP_006540731.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340837|ref|ZP_21529806.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682278|gb|AFO56655.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629443|gb|ELY82726.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 319
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 130 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKED 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ A V Q+EIG+ + + + L ++ +P N +PRFC+ L + +
Sbjct: 190 IPRSLEEVTSVARVEQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVGTDVE 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L D+ Q + + T VT+R Y
Sbjct: 247 TKAIEIIDRTTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRY 306
Query: 310 KELLENWD 317
+E LE D
Sbjct: 307 REQLEAID 314
>gi|448585353|ref|ZP_21647746.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445726053|gb|ELZ77670.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 332
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 3/190 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +ATAAL + R A
Sbjct: 143 NLKQALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAG 202
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E+ + V + E+ + + + L+L I ++PRF + L L+ A+
Sbjct: 203 TPRSLDELEKVSRVDKMELTRTYRYVVRELKLE--IKPADPEQYVPRFASELGLSDEAER 260
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R YK
Sbjct: 261 QARKLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYK 320
Query: 311 ELLENWDDLL 320
ELLE D L
Sbjct: 321 ELLEVQDGTL 330
>gi|448363683|ref|ZP_21552280.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445645786|gb|ELY98783.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 326
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS +GL ++ + A ++R L RS+E ++TA + A R+A
Sbjct: 137 NLKQALGEIDRMASAVGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ A+
Sbjct: 197 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLDLSDEAE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 254 HRARALLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|448562505|ref|ZP_21635463.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445718823|gb|ELZ70507.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 332
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 3/190 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +ATAAL + R A
Sbjct: 143 NLKQALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAG 202
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E+ + V + E+ + + + L+L I ++PRF + L L+ A+
Sbjct: 203 TPRSLDELEKVSRVDKMELTRTYRYVVRELKLE--IKPADPEQYVPRFASELGLSDEAER 260
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R YK
Sbjct: 261 QARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYK 320
Query: 311 ELLENWDDLL 320
ELLE D L
Sbjct: 321 ELLEVQDGTL 330
>gi|452206769|ref|YP_007486891.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082869|emb|CCQ36145.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 104/188 (55%), Gaps = 5/188 (2%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I +AS LGL ++ + A ++R L RS+E ++TAAL A R+A
Sbjct: 136 NLKQALGEIERMASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTAALYTAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI + V + E+ + + + L L +P + S ++PRF + L L+ +
Sbjct: 196 IPRSLDEIERVSRVDRMELTRTYRYIIRELNLEVKPADPES---YIPRFVSDLGLSDEVE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R Y
Sbjct: 253 RRARELIEAARGDGLLSGKSPVGLAAAAVYAAALLCNEKVTQNDVSEVADISEVTIRNRY 312
Query: 310 KELLENWD 317
KELLE D
Sbjct: 313 KELLEAGD 320
>gi|350634612|gb|EHA22974.1| hypothetical protein ASPNIDRAFT_206867 [Aspergillus niger ATCC
1015]
Length = 351
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 130/323 (40%), Gaps = 50/323 (15%)
Query: 19 GRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQP 78
G T CGSCG V+A+R+ H + + D Q ND DP +
Sbjct: 40 GSHETVCGSCGLVLADREIDMHSEWRTFSNDD---------------QNND----DPSRV 80
Query: 79 TGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ 138
+ L L + + SG++ +L R SS + + L AY +
Sbjct: 81 GDAMNPL----LNGDQLETQIASGGSGRVRDLYRAQNKQSSEKANKAL------LAAYKE 130
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I + + ++ D A LF+ A + +S + + + A R+ + PRT EI
Sbjct: 131 IGALCDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEI 190
Query: 199 SIAANVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP-------------------R 237
V +KEIG+ K L + Q + IN+ + +P R
Sbjct: 191 FAVTKVTRKEIGRIYKALEKFFTAQNLERINAVVSSGGVPDPNDTYTATTSTKPSDLCNR 250
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC LL L +++ + + V R+P+SI AA IY+A L K+ EI V
Sbjct: 251 FCNLLDLPFQVTSVSSALSDRVTTMGDLAGRSPLSIVAACIYMASYLMGHGKSAKEISHV 310
Query: 298 TGLTEVTLRKVYKELLENWDDLL 320
+++ T+R YK+L + L+
Sbjct: 311 AHVSDGTIRGAYKQLYAERERLI 333
>gi|386875622|ref|ZP_10117781.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806378|gb|EIJ65838.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 303
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L +D + L L + + A ++R +R RS++ L A L + R +
Sbjct: 118 NLRQALNEMDKLKDKLALTDSVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTE 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL +I+ N+ +K++ + +++ L+L P+ V R ++ +L++ ++
Sbjct: 178 TPRTLDDIAKGINIRRKDVARCYRLIFRELELKMPVVDPVKGV--SRIASIAELSEKSKR 235
Query: 251 LATHIGEVVINKC----FCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
A V++N+ ++P+ I+AAA+YLAC + K+Q +I +G+TEVT+R
Sbjct: 236 KAI----VILNQAKEIGMVAGKDPMGIAAAALYLACISTGETKSQKDISIASGVTEVTIR 291
>gi|396491116|ref|XP_003843493.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
gi|312220072|emb|CBY00014.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
Length = 368
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 126/331 (38%), Gaps = 62/331 (18%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCGRV+A+R + + D Q ND DP
Sbjct: 57 TICGSCGRVLADRIIDTRSEWRTFSND---------------DQGND----DP------- 90
Query: 83 TAFSAWSLVPSPLF----LRSSHSFS-GQLAELERTFELLSSSTTSTSSSVMMDNLRAYL 137
S +PL L + F G L R EL + S AY
Sbjct: 91 ---SRIGDAANPLLHGSQLATEIGFGDGGL----RVRELSRAHNKSNHDKANKALQAAYG 143
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
QI + ++ + A LF+ + +S +A+ + A R+ ++ R+ +E
Sbjct: 144 QISTLCDSQNINKTTAETAKYLFKMTDDVKLFKGKSQDAIIAGCIFIACRQHRQQRSFRE 203
Query: 198 ISIAANVPQKEIGKYIKILGEALQLSQPIN------------------------SNSIAV 233
I NV +KE+G+ K L LQ +Q S S A+
Sbjct: 204 IFKMTNVSKKEVGRTFKALEAYLQKTQKEKTGPTVAGNGAVMDTTNLLSTDENRSTSAAM 263
Query: 234 HMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAE 293
MPR C L L + Q++A EVV + R+P+SI+ A +YL + KT E
Sbjct: 264 LMPRACAKLGLGTNVQIVAEQCAEVVSREGIAAGRSPLSIAGACLYLVSHIMGHPKTPKE 323
Query: 294 ICKVTGLTEVTLRKVYKELLENWDDLLPSNY 324
I +++ T+R YK + D ++ ++
Sbjct: 324 IGAAVEVSDGTIRTAYKLMFTAQDKIIQQDW 354
>gi|448706184|ref|ZP_21700953.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
gi|445794734|gb|EMA45273.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
Length = 328
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++T+ + A R+A
Sbjct: 139 NLKQALGEIDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ A+
Sbjct: 199 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLDLSDEAE 255
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 256 HRARALLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 315
Query: 310 KELLE 314
ELLE
Sbjct: 316 HELLE 320
>gi|448331025|ref|ZP_21520299.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610149|gb|ELY63924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 324
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 107/200 (53%), Gaps = 11/200 (5%)
Query: 124 TSSSVMMDNLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
TS NL+ A+ +I +AS LGL + A L+R L RS+EA++TA+L
Sbjct: 127 TSKDAAERNLKQAFGEIERMASALGLPEPCRETAGVLYRRAVDEGLLPGRSIEAMSTASL 186
Query: 183 VQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRF 238
A R PRTL + + V + I + + L L L + PI+ ++P++
Sbjct: 187 YAAARRHGTPRTLVAFTSVSRVDKLPIQRAYRYLSSELGLQIEPADPIH------YLPQY 240
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
++L+++ A+ LA I E + + R+P ++AAAIY A +L ++R TQ I + T
Sbjct: 241 ASVLEISDDAERLAREILEAAKAQGLHSGRSPAGLAAAAIYGAARLANERLTQERIGEET 300
Query: 299 GLTEVTLRKVYKELLENWDD 318
G++ VT+R Y+ELL+ + +
Sbjct: 301 GVSRVTVRNRYRELLDAYGE 320
>gi|344210357|ref|YP_004794677.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343781712|gb|AEM55689.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 286
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 4/191 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
SS + + A+ +I + S + L I D A LF + L+ R++E A AA+
Sbjct: 99 SSKRERNKVYAFTEIRRIISSMSLSDAIRDRACVLFESAQNEDLLQGRTLEGFAAAAIYA 158
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQ 243
R RT+ E+ A Q E+ L L L + PI+ ++PRF T L
Sbjct: 159 TCRTEGVARTVDELCTVAKATQSELRAAYDALNRELGLPTGPIDPRE---YVPRFATTLD 215
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L + + A + + ++ + RNP ++AA +Y A Q D TQAE + +T V
Sbjct: 216 LPTAVRQRAEQLVDEAQDRGLVSGRNPAGVAAACLYTAAQERDVALTQAEAAETADVTPV 275
Query: 304 TLRKVYKELLE 314
TLR Y EL E
Sbjct: 276 TLRGTYTELQE 286
>gi|448434357|ref|ZP_21586167.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445685273|gb|ELZ37628.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 333
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 2/180 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + +L L + D A LF + LR RS+E A A + A R A RT
Sbjct: 155 AYTEIRRLTGVLELPDSVRDTACSLFDSAQEESLLRGRSLEGFAAACVYVACRTADVART 214
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ E+ A + E + L L PI + ++PRF + L + + + A
Sbjct: 215 VGEVCDEAKASEDEHQAAFDAMNRELGL--PIAPAGPSEYLPRFASDLGCDPAVERRAGE 272
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ + + + RNP+ ++AA +Y A + D TQ E V +T VT+R+ Y +L E
Sbjct: 273 LADRAVEEGIANGRNPVGVAAACLYTAARELDAECTQQEAAAVADVTPVTVRRTYVDLTE 332
>gi|85068255|ref|XP_962143.1| hypothetical protein NCU07289 [Neurospora crassa OR74A]
gi|28923740|gb|EAA32907.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 348
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 126/331 (38%), Gaps = 50/331 (15%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CGSCG V+ ER + + D +D PS N +D D Q T
Sbjct: 46 CGSCGLVLGERIIDTRSEWRTFSNDDQ----GNDDPSRVGDGPNQLIDGDQLQTT----- 96
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
+F G+ + L + T +S + ++AY I +
Sbjct: 97 ----------------IAFDGKNG---KNLSHLQNKITQDKNSKQL--MQAYRDIQGLTD 135
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
+ + + A +++ L+ +S EA+ + A R+ PRT +EI V
Sbjct: 136 SINAGTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTKV 195
Query: 205 PQKEIGKYIKILGEALQL------------------SQPINSNSIAVHMPRFCTLLQLNK 246
+KEIG+ K L LQ Q S + R+C+ L
Sbjct: 196 SKKEIGRVFKQLESFLQKIGGEEHAITTSIPTFNQQYQGKGSTTATELCARYCSNLNFRN 255
Query: 247 SAQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
S V +A + + R+P+S++AA IY+A + ++ +T EI V G+++ T
Sbjct: 256 SVAVEDVARQLADKTSTISELAGRSPLSVAAACIYMASHIRNESRTSKEIATVAGVSDGT 315
Query: 305 LRKVYKELLENWDDLLPSNYTPAVPPEKAFP 335
++ Y+ L D LL + VP P
Sbjct: 316 VKTAYRLLYNKKDKLLEEIFPEGVPNLDKLP 346
>gi|448540715|ref|ZP_21623636.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549017|ref|ZP_21627793.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555808|ref|ZP_21631737.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445708868|gb|ELZ60703.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445713706|gb|ELZ65481.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717331|gb|ELZ69049.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 332
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 3/190 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +AT+AL + R A
Sbjct: 143 NLKQALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAG 202
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E+ + V + E+ + + + L+L I ++PRF + L L+ A+
Sbjct: 203 TPRSLDELEKVSRVDKMELTRTYRYIVRELKLE--IKPADPEQYVPRFASELGLSDEAER 260
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R YK
Sbjct: 261 QARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYK 320
Query: 311 ELLENWDDLL 320
ELLE D L
Sbjct: 321 ELLEVQDGTL 330
>gi|336254668|ref|YP_004597775.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338657|gb|AEH37896.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L A R+A
Sbjct: 137 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYAAARQAG 196
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI + V + EI + + + L L QP + S ++PRF + L L +
Sbjct: 197 TPRSLDEIDAVSRVEKDEIARTYRYVIRELGLEVQPADPES---YVPRFASDLDLPDETE 253
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y L +++ TQ ++ +V ++EVT+R Y
Sbjct: 254 RRARQLLKTAKDSGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVANISEVTIRNRY 313
Query: 310 KELLE 314
ELLE
Sbjct: 314 HELLE 318
>gi|448567682|ref|ZP_21637607.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445711680|gb|ELZ63470.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 342
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 5/185 (2%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ++ + S LGL + + A ++R L RS+E +ATAA+ A R+A
Sbjct: 147 NLKQALGEVERMGSALGLPDTVRETASVIYRRALDDDLLPGRSIEGVATAAIYAAARQAG 206
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E+ + V + E+ + + + L L +P + A ++PRF + L + +
Sbjct: 207 VPRSLDEVRRVSRVDKMELTRTYRYVSRELGLDMKPADP---AQYLPRFVSELDVTDDVE 263
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAAIY L D+ TQ+E+ +VT ++EVT+R Y
Sbjct: 264 RRARSLLDNAKRQGIHSGKSPVGLAAAAIYAGGLLADEELTQSEVSEVTDISEVTIRNRY 323
Query: 310 KELLE 314
+ELLE
Sbjct: 324 RELLE 328
>gi|292655824|ref|YP_003535721.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448289811|ref|ZP_21480974.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448570851|ref|ZP_21639362.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448595749|ref|ZP_21653196.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|14195256|sp|Q9YGA5.1|TFB2_HALVD RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|5410473|gb|AAD43074.1|AF143693_1 transcription factor B [Haloferax volcanii]
gi|291372841|gb|ADE05068.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445581328|gb|ELY35689.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445722769|gb|ELZ74420.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445742203|gb|ELZ93698.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 3/190 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +AT+AL + R A
Sbjct: 143 NLKQALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAG 202
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E+ + V + E+ + + + L+L I ++PRF + L L+ A+
Sbjct: 203 TPRSLDELEKVSRVDKMELTRTYRYIVRELKLE--IKPADPEQYVPRFASELGLSDEAER 260
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R YK
Sbjct: 261 QARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYK 320
Query: 311 ELLENWDDLL 320
ELLE D L
Sbjct: 321 ELLEVQDGTL 330
>gi|448704008|ref|ZP_21700548.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445796624|gb|EMA47125.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 344
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 3/194 (1%)
Query: 124 TSSSVMMDNLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
TS NL+ L ++ +AS LGL + A ++R L RS+EA+ TA+L
Sbjct: 143 TSKDARERNLKQALGELERMASALGLSEPCRETAAVIYRRAVEEELLPGRSIEAMTTASL 202
Query: 183 VQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLL 242
A R+ PRT + V + + + L L+L I ++ +F + L
Sbjct: 203 YAAARQQGTPRTFSAFESVSRVDDESTKRAYRYLSSELELE--IAPPEPEQYLRQFASDL 260
Query: 243 QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
++ + LA + E + ++P ++AAAIY A +L + R TQ I + TG+++
Sbjct: 261 AVSDETERLARDVLEAAKAEELHIGKSPAGLTAAAIYAAGRLTNDRVTQETIDETTGVSK 320
Query: 303 VTLRKVYKELLENW 316
T+R Y+ELLE +
Sbjct: 321 FTVRNRYRELLEAY 334
>gi|383620637|ref|ZP_09947043.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448698233|ref|ZP_21698872.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445780852|gb|EMA31722.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 328
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++T+ + A R+A
Sbjct: 139 NLKQALGEIDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L QP + S ++PRF + L L+ A+
Sbjct: 199 VPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPES---YVPRFASGLDLSDEAE 255
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 256 HRARALLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 315
Query: 310 KELLE 314
ELLE
Sbjct: 316 HELLE 320
>gi|379335328|gb|AFD03312.1| transcription factor TFIIB cyclin-related protein [uncultured
archaeon W4-93a]
Length = 307
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 19/181 (10%)
Query: 130 MDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREA 189
MD L+ L + DV + + A ++R +R RS+ L A L A R
Sbjct: 128 MDKLKDKLALADV---------VVEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNT 178
Query: 190 QEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQ 249
+ PRTL +++ N+ +K++ + +++ L+L P+ V R ++ L++ ++
Sbjct: 179 ETPRTLDDMANGINIRRKDVARCYRLIFRELELKMPVVDPVKGV--SRIASIADLSEKSK 236
Query: 250 VLATHIGEVVINKC----FCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
A +++NK ++P+ I+AAA+YL+C + K+Q EI +G+TEVT+
Sbjct: 237 RKAI----IILNKAKDVGMVAGKDPMGIAAAALYLSCISSGESKSQKEISIASGVTEVTI 292
Query: 306 R 306
R
Sbjct: 293 R 293
>gi|409721273|ref|ZP_11269480.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448722199|ref|ZP_21704737.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445789910|gb|EMA40583.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 284
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 4/191 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
+S + + A+ +I + LGL + D A LF + LR RS+E A AA+
Sbjct: 97 ASKAERNRVYAFTEIRRLVGALGLPETVRDRACVLFESAQNEDLLRGRSLEGFAAAAVYA 156
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQ 243
R RT+ E+ AA + E+ L L L + PI+ A ++PRF +LL
Sbjct: 157 VCRTEGLSRTIAEVRDAAKASRGELVAAYDALNRELGLPTGPIDP---AEYLPRFASLLD 213
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
++ + + A + + + + RNP ++AA +Y A + D TQ V G+T V
Sbjct: 214 VSTAVEARAHELVDEAESLGATSGRNPSGVAAACLYTAARELDGSLTQQAAADVAGVTPV 273
Query: 304 TLRKVYKELLE 314
TLR Y +L E
Sbjct: 274 TLRATYHDLRE 284
>gi|399578260|ref|ZP_10772009.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236752|gb|EJN57687.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 389
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LG+ + A ++R + +R RS+E +AT L A R+
Sbjct: 203 NLQFALSEMDRMASALGVPKSTREVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQEG 262
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VP +EIG+ + + + L L +P++ ++PRF + L + + +
Sbjct: 263 IPRSLDEVADVSRVPYQEIGRTYRYVAKELSLEMRPVDPKE---YVPRFASELGVPEEVE 319
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P +AAA+Y A L ++++TQ E+ V +TEVT+R Y
Sbjct: 320 QKANDVIDTAAEEGLLSGKSPTGFAAAALYAAGLLCNEKRTQKEVADVAQVTEVTIRNRY 379
Query: 310 KELLE 314
+E +E
Sbjct: 380 QEQIE 384
>gi|407927206|gb|EKG20106.1| Transcription factor TFIIB [Macrophomina phaseolina MS6]
Length = 355
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 136/338 (40%), Gaps = 52/338 (15%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCG V++ R + + D D PS G +P
Sbjct: 50 TVCGSCGLVLSARVVDTRSEWRTFSNDDQ----NGDDPS------RVGDAANPL------ 93
Query: 83 TAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDV 142
L S L S++ + EL R S T ++ S+M +AY I
Sbjct: 94 -------LNGSQLATNISYTDGAKSRELNRAQN--KSGTDKSNKSLM----QAYKLIGQW 140
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
L + + D A +++ + + +++E++ L A R+AQ+ R+ +E+
Sbjct: 141 CDRWLLPHTVSDTAKHMYKMTDDSKGFKGKALESIVAGCLFLACRQAQQGRSFRELHELT 200
Query: 203 NVPQKEIGKYIK--------------ILGEA-LQLSQPINSNSIAVHMP----RFCTLLQ 243
V +KEIG+ K ILG L ++ + A P R+C L
Sbjct: 201 GVSKKEIGRIFKSLDKFFNAQNRSGNILGNGGLVMAGDAYKSKEATSPPELCARYCNQLG 260
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L+ Q+LA + E ++ + R+P+S AA IY+ L ++ T EI V G+++
Sbjct: 261 LDNRVQMLAQRLAEEMVKQGALAGRSPLSAVAACIYMISHLVEQPLTPKEIAPVAGVSDG 320
Query: 304 TLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITS 341
T+R YK L D LL PA EK + S
Sbjct: 321 TIRTAYKHLYAAKDKLL----DPAWVKEKGLKLEKLPS 354
>gi|313127155|ref|YP_004037425.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288376|ref|ZP_21479575.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293520|gb|ADQ67980.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569527|gb|ELY24099.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 321
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+ + A R A
Sbjct: 132 NLKQALGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAG 191
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EIS + V + E+ + + + A +LS + ++PRF + L L+ +++
Sbjct: 192 VPRSLDEISEVSRVEKSEVARTYRYI--ARELSLEVKPADPEQYVPRFGSELGLSDESKM 249
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 250 RARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRYH 309
Query: 311 ELLE 314
ELLE
Sbjct: 310 ELLE 313
>gi|448613121|ref|ZP_21663001.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740018|gb|ELZ91524.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 345
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 101/184 (54%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + ++R + L RS+E +AT++L A R A
Sbjct: 156 NLKQALGEIDRMASALGLPENVRETTSVIYRRALNDDLLPGRSIEGVATSSLYAAARMAD 215
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + EI + + + L+L I ++PRF + L ++ ++
Sbjct: 216 TPRSLDEITSVSRVEKDEIARTYRYVVRELKL--EIKPADPEQYVPRFASELGISDESER 273
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + + ++P+ ++AAA+Y A L +++ TQ E+ V ++EVT+R Y
Sbjct: 274 RARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSDVANISEVTIRNRYH 333
Query: 311 ELLE 314
ELLE
Sbjct: 334 ELLE 337
>gi|448358436|ref|ZP_21547118.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445646069|gb|ELY99061.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 352
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 104/188 (55%), Gaps = 11/188 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L + R+A
Sbjct: 164 NLKQALGEIDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAG 223
Query: 191 EPRTLQEISIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNK 246
PR+L EI+ + V + EI + I+ LG ++ + P++ ++PRF + L L+
Sbjct: 224 TPRSLDEIAGVSRVEKDEIARTYRYVIRELGLEVKPADPVS------YVPRFASDLDLSD 277
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A + E + ++P+ ++AAA+Y L +++ TQ ++ +V ++EVT+R
Sbjct: 278 ETERRARQLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEVTIR 337
Query: 307 KVYKELLE 314
Y ELLE
Sbjct: 338 NRYHELLE 345
>gi|448576224|ref|ZP_21642267.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445729904|gb|ELZ81498.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 332
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 102/187 (54%), Gaps = 3/187 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +ATA+L A R A
Sbjct: 143 NLKQALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMAD 202
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L E+ + V + E+ + + + L+L I ++PRF + L L+ A+
Sbjct: 203 TPRSLDELEKVSRVEKMELTRTYRYIVRELKLE--IKPADPEQYVPRFASELGLSDEAER 260
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R YK
Sbjct: 261 QARELLRGAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSAVADISEVTIRNRYK 320
Query: 311 ELLENWD 317
ELLE D
Sbjct: 321 ELLEVQD 327
>gi|55379386|ref|YP_137236.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448648697|ref|ZP_21679762.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55232111|gb|AAV47530.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445774441|gb|EMA25457.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 286
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 4/191 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
SS + + A+ +I + S + L I D A LF + L+ R++E A AA+
Sbjct: 99 SSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQNEDLLQGRTLEGFAAAAIYA 158
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQ 243
R RT+ E+ A Q E+ L L L + PI+ ++PRF T L
Sbjct: 159 TCRTEGVARTVDELCTVAKATQAELRAAYDALNRELGLPTGPIDPRE---YVPRFATTLD 215
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L + + A + + ++ + RNP ++AA +Y A Q +D TQA+ + +T V
Sbjct: 216 LPTAVRQRAEQLVDEAQDRGLVSGRNPAGVAAACLYTAAQEQDVALTQAKAAETADVTPV 275
Query: 304 TLRKVYKELLE 314
TLR Y EL E
Sbjct: 276 TLRGTYTELQE 286
>gi|193084026|gb|ACF09700.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote AD1000-202-A2]
Length = 307
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 117/247 (47%), Gaps = 17/247 (6%)
Query: 68 NDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAE--LERTFELLSS-STTST 124
NDG D G T+ + + S + + +G+ E ++++ E L + + S
Sbjct: 60 NDGGDR---SRVGAGTSITMHDMGLSTIIGAQNKDATGKPLESSMKKSIERLRTWDSRSQ 116
Query: 125 SSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALV 183
+ S NLR L +D + L L ++ + A ++R ++ RS+ L A +
Sbjct: 117 AHSSAERNLRQALSEMDKLKDKLTLTDNVIEKAAYIYRKAIERKLVKGRSIHGLVAACIY 176
Query: 184 QAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQ 243
A R + PRTL +I+ N+ +K++ + +I+ L L P+ V R +L
Sbjct: 177 AACRITETPRTLDDIAEGINIKRKDVARSYRIIFRELDLKIPVADPVKGV--SRIASLAG 234
Query: 244 LNKSAQVLATHIGEVVINKC----FCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 299
L ++ + A +++NK ++P+ I+AAA+YLAC KTQ EI +G
Sbjct: 235 LGEATKRKAL----ILLNKAKKIGMVAGKDPMGIAAAALYLACISTGGNKTQKEISIASG 290
Query: 300 LTEVTLR 306
+TEVT+R
Sbjct: 291 VTEVTIR 297
>gi|399575499|ref|ZP_10769257.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399239767|gb|EJN60693.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 319
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E ++TA + A R A
Sbjct: 130 NLKQALGEIDRMASALGLPTNVRETASVIYRRALNDNLLPGRSIEGVSTACVYAAARMAG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + E+ + + + L+L +P + S ++PRF + L L++ +
Sbjct: 190 VPRSLDEITDVSRVDKSEVARTYRYVVRELKLEVRPADPES---YVPRFASSLGLSEETE 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 247 RRARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 306
Query: 310 KELLE 314
ELLE
Sbjct: 307 HELLE 311
>gi|399578525|ref|ZP_10772272.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236411|gb|EJN57348.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LG+ + A ++R + +R RS+E +AT L A R+
Sbjct: 133 NLQFALSEMDRMASALGVPRSTREVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + VP +EIG+ + + + L L +P++ +PRF + L + + +
Sbjct: 193 IPRSLDEVADVSRVPYQEIGRTYRYVAKELSLEMRPVDPKEF---VPRFASELDVPEEVE 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + ++P +AAA+Y A L +K++TQ E+ V +TEVT+R Y
Sbjct: 250 QKANEIIDTSAEAGLLSGKSPTGFAAAALYAAGLLCNKKRTQREVADVAQVTEVTIRNRY 309
Query: 310 KELLE 314
+E +E
Sbjct: 310 QEQIE 314
>gi|15920551|ref|NP_376220.1| transcription initiation factor IIB [Sulfolobus tokodaii str. 7]
gi|21363017|sp|Q975S1.1|TF2B_SULTO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|15621334|dbj|BAB65329.1| transcription initiation factor IIB 1 [Sulfolobus tokodaii str. 7]
Length = 308
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 101/187 (54%), Gaps = 2/187 (1%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
SS+ + +A ++ + ++L L + D A ++R +R RS+E++ A++ A
Sbjct: 113 SSIDRNLAQAMNELERIGNLLNLPKAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAA 172
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R + RTL EI+ +KE+ + +++ L ++ P++ ++ R +LL L+
Sbjct: 173 CRRMKMARTLDEIAQFTKANRKEVARCYRLILRELDINVPVSDPK--DYVTRIGSLLGLS 230
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
S +A I E ++P ++AAAIY+A L D+R+TQ EI ++ G+TEVT+
Sbjct: 231 GSTMKMAIDIIEKAKESGLTAGKDPAGLAAAAIYIAALLNDERRTQKEIAQIAGVTEVTV 290
Query: 306 RKVYKEL 312
R YKEL
Sbjct: 291 RNRYKEL 297
>gi|448664209|ref|ZP_21684012.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445774854|gb|EMA25868.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 286
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 4/191 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
SS + + A+ +I + S + L I D A LF + L+ R++E A AA+
Sbjct: 99 SSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQNEDLLQGRTLEGFAAAAVYA 158
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQ 243
R RT+ E+ A Q E+ L L L + PI+ ++PRF T L
Sbjct: 159 TCRTEGVARTVDELCTVAKATQAELRAAYDALNRELGLPTGPIDPRE---YVPRFATTLD 215
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L + + A + + ++ + RNP ++AA +Y A Q D TQAE + +T V
Sbjct: 216 LPTAVRQRAERLVDEAQDRGLVSGRNPAGVAAACLYTAAQERDVALTQAEAAETADVTPV 275
Query: 304 TLRKVYKELLE 314
TLR Y EL E
Sbjct: 276 TLRGTYTELQE 286
>gi|268324205|emb|CBH37793.1| transcription initiation factor IIB, C-terminal sequence
[uncultured archaeon]
Length = 232
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 4/189 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
S+++ L A +I ++S+L + + + +++R + RS+E + A++
Sbjct: 38 SAAIGRQRLVAQAEIDRLSSLLTIPEKTRESSLEIYRKAWENDLIHGRSIEKILAASMYM 97
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQ 243
A R+ PRTL EI V +K+I K K+L L + PI S ++ RFC L
Sbjct: 98 ACRKHNVPRTLNEIEKVTRVGRKDIIKACKLLANRLGMKLAPI---SPLEYVGRFCAKLN 154
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L A A I E + + + R P I+A+AIY+A L D +KTQ E+ + TG+TEV
Sbjct: 155 LTNCAAEKAREIVEKALERDMTSGRGPTGIAASAIYIAAILCDTKKTQKEVAEATGVTEV 214
Query: 304 TLRKVYKEL 312
TLR YKE+
Sbjct: 215 TLRVRYKEM 223
>gi|357128609|ref|XP_003565964.1| PREDICTED: transcription initiation factor IIB-2-like [Brachypodium
distachyon]
Length = 338
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 10/188 (5%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSAT-CLRN-RSVEALATAALVQAIREAQEP 192
A+ I D+A LGL I D A Q F+ A C R RS +A+ A L A R+ P
Sbjct: 127 AFRGIADMADRLGLVATIRDSAKQTFKRLEEAKGCPRGARSRDAVYAACLYVACRKEGMP 186
Query: 193 RTLQEI-SIAAN--VPQKEIGKYI----KILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
RT +E+ S+ A +K+IGK K+LGE I ++ RFC++L L
Sbjct: 187 RTYKELASVTAQGAAARKDIGKMTTHIKKLLGEEDGQVLDIGVVRATSYLRRFCSILGLG 246
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
Q+LA + RRNP SI+AA IY+ Q R++ ++ TG+ E T+
Sbjct: 247 NQ-QMLAAQEAVSRLEMELDVRRNPESIAAAIIYMVVQRAGARRSVKDVSAATGVAEGTI 305
Query: 306 RKVYKELL 313
++ +K+L+
Sbjct: 306 KEAHKDLV 313
>gi|66359636|ref|XP_626996.1| transcription initiation factor TFIIB Sua7p; ZnR+2cyclins
[Cryptosporidium parvum Iowa II]
gi|46228446|gb|EAK89316.1| transcription initiation factor TFIIB Sua7p; ZnR+2cyclins
[Cryptosporidium parvum Iowa II]
Length = 456
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 13/217 (5%)
Query: 116 LLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVE 175
+L +T ++S ++ + + Q+ +A+ L +I + ++ ++ + L++
Sbjct: 234 MLKHNTQASSDRMIKE---VFNQLRQIANSFSLHDNIIERCKEIVKEQSNLNILKSGKKH 290
Query: 176 ALATAALVQAIREAQEPRTLQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH 234
LA L A RE RT++E+ S + ++E+ + I L + L P S+S A
Sbjct: 291 VLAIVYL--ACREEGVSRTVKELLSFDRTISERELVRSINKLKKDLPRRGPTLSSSAAEL 348
Query: 235 MPRFCTLLQLNKSAQVLATHI---GEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ 291
MPRFC LQL+ +A ++ E INK P S++A AIY C L + +
Sbjct: 349 MPRFCHYLQLSHEIVGIAEYVCRTAEQYINKS----HRPNSLAAGAIYFVCNLCNIQIEM 404
Query: 292 AEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAV 328
+ E T+R VYKELL + LLPS++TP +
Sbjct: 405 KSVAVAAKSGETTVRGVYKELLLVGEKLLPSDFTPKL 441
>gi|448581117|ref|ZP_21645107.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445733879|gb|ELZ85439.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 342
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 5/185 (2%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ++ + S LGL + + A ++R L RS+E +ATAA+ A R+A
Sbjct: 147 NLKQALGEVERMGSALGLPDTVRETASVIYRRALDDDLLPGRSIEGVATAAIYAAARQAG 206
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E+ + V + E+ + + + L L +P + A ++PRF + L + +
Sbjct: 207 VPRSLDEVRRVSRVDKMELTRTYRYVSRELGLDMKPADP---AQYLPRFVSELDVTDDVE 263
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAAIY L D+ TQ+E+ VT ++EVT+R Y
Sbjct: 264 RRARSLLDNAKRQGIHSGKSPVGLAAAAIYAGGLLADEELTQSEVSDVTDISEVTIRNRY 323
Query: 310 KELLE 314
+ELLE
Sbjct: 324 RELLE 328
>gi|397651191|ref|YP_006491772.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
COM1]
gi|393188782|gb|AFN03480.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
COM1]
Length = 273
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 90/172 (52%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
++ +L L + + A L+R+ R +E A + R + PRTL EI+
Sbjct: 92 LSGMLKLPKYVEEEAAYLYREAAKRGLTRRIPIETTVAACIYATCRLFKVPRTLNEIASY 151
Query: 202 ANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVIN 261
+ +KEI K +++ L L+ + ++ +F L+L++ + I
Sbjct: 152 SKTEKKEIMKAFRVIVRNLNLTPKMLLARPTDYVDKFADELELSERVRRRTVDILRRANE 211
Query: 262 KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELL 313
+ + +NP+S+ AAA+Y+A LE +R++Q EI +VTG++E+T+R YKEL+
Sbjct: 212 EGITSGKNPLSLVAAALYIASLLEGERRSQKEIARVTGVSEMTVRNRYKELV 263
>gi|407465001|ref|YP_006775883.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048189|gb|AFS82941.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 303
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L +D + L L + + A ++R +R RS++ L A L + R +
Sbjct: 118 NLRQALNEMDKLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTE 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL +I+ N+ +K++ + +++ L+L P+ V R ++ +L++ ++
Sbjct: 178 TPRTLDDIAKGINIRRKDVARCYRLIFRELELKMPVVDPVKGV--SRIASIAELSEKSKR 235
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
A I ++P+ I+AAA+YLAC + K+Q +I +G+TEVT+R
Sbjct: 236 KAIAILNQAKEIGMVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIR 291
>gi|408403957|ref|YP_006861940.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364553|gb|AFU58283.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 322
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 2/178 (1%)
Query: 146 LGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVP 205
LGL I + + +R ++ R+V ++ A++ A RE + PRTL EI+ A+NV
Sbjct: 117 LGLPDAIVEKSAYFYRKASRLGLIKGRTVSSVLAASVYLACRELENPRTLSEIATASNVA 176
Query: 206 QKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFC 265
+K+I + ++L P ++ + R + +++ + +A I ++
Sbjct: 177 RKKISRDYRMLVRMFDPKIPTVDHARCI--TRIANKVGVSEKTKRIAVKIMREIVAMQIS 234
Query: 266 TRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSN 323
+ P+ I+A +Y+AC + KTQ E+ G+TEVT+R Y EL + D S+
Sbjct: 235 AGKGPMGIAATVLYIACMHAGEVKTQKELSIAAGVTEVTIRNRYSELKKYLQDFAKSS 292
>gi|452839736|gb|EME41675.1| hypothetical protein DOTSEDRAFT_135117 [Dothistroma septosporum
NZE10]
Length = 358
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L AY QI + L + D A L++D + + +S EAL + A R P
Sbjct: 133 LVAYKQIGALCDNWDLPSMVSDTAKHLYKDADESRVFKGKSQEALIAGCVFLACRRNNVP 192
Query: 193 RTLQEISIAANVPQKEIGKYIKIL------GEALQLSQPINSNSIAVH------------ 234
R+ +E+ V +KEIG+ K+L E + + N+ ++ +
Sbjct: 193 RSFREVMELTKVSKKEIGRTFKMLETFLMGKEKERQANGTNTGTVVFNDAYKGSTTSDPS 252
Query: 235 --MPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQA 292
R+C +L +++ A +A I + R+P+S +AA IY+A L D+ KT
Sbjct: 253 EMCARWCNMLSMSQQASNVAIGIASNMTKSGALAGRSPLSAAAACIYMAGHLMDEIKTAK 312
Query: 293 EICKVTGLTEVTLRKVYKELLENWDD 318
E+ V +++ T+R YK L W+D
Sbjct: 313 EVQNVAKVSDSTIRHAYKLL---WND 335
>gi|407462627|ref|YP_006773944.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046249|gb|AFS81002.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 303
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 116/239 (48%), Gaps = 6/239 (2%)
Query: 72 DEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQ--LAELERTFELLSS-STTSTSSSV 128
DE TG T+ + + S + ++ +G+ A ++ + E L + + S + S
Sbjct: 55 DEGNKARTGAGTSLTMHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSS 114
Query: 129 MMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIR 187
NLR L +D + L L + + A ++R +R RS++ L A L + R
Sbjct: 115 ADRNLRQALNEMDKLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCR 174
Query: 188 EAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKS 247
+ PRTL +++ N+ +K++ + +++ L+L P+ V R ++ +L++
Sbjct: 175 NTETPRTLDDVAKGINIRRKDVARCYRLIFRELELKMPVVDPVKGV--SRIASIAELSEK 232
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
++ A I ++P+ I+AAA+YLAC + K+Q +I +G+TEVT+R
Sbjct: 233 SKRKAIAILNEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIR 291
>gi|47156969|gb|AAT12348.1| transcription initiation factor TFIIB [Antonospora locustae]
Length = 306
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 4/172 (2%)
Query: 152 ICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211
ICD A F+ +++S + A + A R+ PRT +EIS+ VP+K+IG+
Sbjct: 124 ICDRAKFNFKAVEEKKIAKSKSHKGTVAACIYIACRQEGCPRTFKEISVLTAVPRKDIGR 183
Query: 212 YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPI 271
KI+ L+ ++ I + RFC+ L L A+ LA I + V T ++
Sbjct: 184 AYKIIYPHLEKFVAVSVKDI---VSRFCSNLDLGHDAEKLAVAIAQNVQRLDILTGKSTD 240
Query: 272 SISAAAIYLACQLEDKRKTQAEICKVT-GLTEVTLRKVYKELLENWDDLLPS 322
SI+AA +YL + + K+ + + T +T+VT++ VYKEL+ + ++++PS
Sbjct: 241 SIAAAIVYLVTNVFSQHKSMQKFLQNTSNVTDVTIKNVYKELVLHKEEVIPS 292
>gi|448356139|ref|ZP_21544886.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445633353|gb|ELY86541.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 364
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 103/188 (54%), Gaps = 11/188 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA+L + R+A
Sbjct: 176 NLKQALGEIDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAG 235
Query: 191 EPRTLQEISIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNK 246
PR+L EI + V + EI + I+ LG ++ + P++ ++PRF + L L+
Sbjct: 236 TPRSLDEIEGVSRVEKDEIARTYRYVIRELGLEVKPADPVS------YVPRFASDLDLSD 289
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A + E + ++P+ ++AAA+Y L +++ TQ ++ +V ++EVT+R
Sbjct: 290 ETERRARQLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEVTIR 349
Query: 307 KVYKELLE 314
Y ELLE
Sbjct: 350 NRYHELLE 357
>gi|408403674|ref|YP_006861657.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364270|gb|AFU58000.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 269
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 94/187 (50%), Gaps = 3/187 (1%)
Query: 132 NLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR A+ ++ + LG+ + + ++R +R R++ A+ AAL A RE
Sbjct: 83 NLRQAFSELDRLKDKLGVSDAVIEKTAYIYRKAQERGLVRGRTISAMVGAALYIACRETG 142
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
RTL++I+ N+ +K++ + +++ L L P+ + R L++ +
Sbjct: 143 ASRTLKDIAEIGNIKRKDLARIYRLVVMELDLKIPMIDPMKCI--VRVANRANLSERTKR 200
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
+A +I + V ++P+ ++A+ +YLAC + +TQ +I + G+TEVT+R YK
Sbjct: 201 VAMNIMKGVTKSGISAGKDPMGLAASVLYLACLNTGESRTQTDIAEAAGVTEVTVRNRYK 260
Query: 311 ELLENWD 317
L D
Sbjct: 261 NLKSQLD 267
>gi|407465796|ref|YP_006776678.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048984|gb|AFS83736.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 301
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 145/319 (45%), Gaps = 31/319 (9%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSI 62
CP C AQG+ T + + C CG VI E+ + + QD
Sbjct: 9 CPRC--AQGKLVTDNESGEMF-CSKCGFVITEKLQEAGPEWRSFTQD------------- 52
Query: 63 PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQ--LAELERTFELLSSS 120
G PT + + +P+ + SG+ A ++ T E L +
Sbjct: 53 -----EGGNKARAGAPTSLTMHDMGLATIINPI----NKDASGKPLSASMKSTIERLRTW 103
Query: 121 TTSTSSSVMMD-NLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALA 178
+ + +D N R A+ ++ + L + + + A ++R +R RS+ AL
Sbjct: 104 DSRSQVHEPVDRNFRQAFSELNRLKDKLAISDSVIEKAAYIYRKALEKGLVRGRSISALM 163
Query: 179 TAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRF 238
AAL A R+ PR L+++ AAN+ +K+I + ++L + L L P+ ++SI + R
Sbjct: 164 AAALYAACRDTSTPRNLKDVEQAANIKRKDIARCYRLLVKELDLKMPV-TDSIQC-VARI 221
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
+ + + + + AT + ++ ++P+ ++AAA+YL+C + KTQ +I +
Sbjct: 222 ASRIGIAEKTKRYATKVLKMAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAA 281
Query: 299 GLTEVTLRKVYKELLENWD 317
+TEVT+R YK L E+ +
Sbjct: 282 NVTEVTIRNRYKGLKESLE 300
>gi|448580042|ref|ZP_21644871.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448590025|ref|ZP_21650084.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445722715|gb|ELZ74372.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445735140|gb|ELZ86693.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 334
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 105/189 (55%), Gaps = 3/189 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+ A R A
Sbjct: 145 NLKQALGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAG 204
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + E+ + + + A +LS + ++PRF + L L+ +++
Sbjct: 205 VPRSLDEIAEVSRVEKSEVARTYRYI--ARELSLEVKPADPEQYVPRFASELGLSDESKM 262
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 263 RARKLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRYH 322
Query: 311 ELLENWDDL 319
ELLE ++L
Sbjct: 323 ELLEAEENL 331
>gi|448355612|ref|ZP_21544362.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445634733|gb|ELY87908.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 317
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 128 NLKYALSEIDRMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEG 187
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++K +
Sbjct: 188 IPRSLEEVTSVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVSKEVE 244
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L D+ Q + T VT+R Y
Sbjct: 245 TRAVEIIDQTTDLGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRY 304
Query: 310 KELLENWD 317
+E L+ D
Sbjct: 305 REQLDAID 312
>gi|161528495|ref|YP_001582321.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339796|gb|ABX12883.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 315
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 116/239 (48%), Gaps = 6/239 (2%)
Query: 72 DEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQ--LAELERTFELLSS-STTSTSSSV 128
DE TG T+ + + S + ++ +G+ A ++ + E L + + S + S
Sbjct: 67 DEGNKARTGAGTSLTMHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSS 126
Query: 129 MMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIR 187
NLR L +D + L L + + A ++R +R RS++ L A L + R
Sbjct: 127 ADRNLRQALNEMDKLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCR 186
Query: 188 EAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKS 247
+ PRTL +++ N+ +K++ + +++ L+L P+ V R ++ +L++
Sbjct: 187 NTETPRTLDDVAKGINIRRKDVARCYRLIFRELELKMPVVDPVKGV--SRIASIAELSEK 244
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
++ A I ++P+ I+AAA+YLAC + K+Q +I +G+TEVT+R
Sbjct: 245 SKRKAIAILNEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIR 303
>gi|448680026|ref|ZP_21690465.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445769674|gb|EMA20747.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 286
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 4/191 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
SS + + A+ +I + S + L I D A LF + L+ R++E A AA+
Sbjct: 99 SSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQNEALLQGRTLEGFAAAAIYA 158
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQ 243
R RT+ EI A E+ L L L + PI+ ++PRF T L
Sbjct: 159 TCRTEGVARTVDEICTVAKATPAELRAAYDALNRELGLPTGPIDPRE---YVPRFATTLD 215
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L + + A + + ++ + RNP ++AA +Y A Q +D TQAE + +T V
Sbjct: 216 LPTAVRQRAERLVDEAQDRGLVSGRNPAGVAAACLYTAAQEQDVALTQAEAAETADVTPV 275
Query: 304 TLRKVYKELLE 314
TLR Y EL E
Sbjct: 276 TLRGTYAELQE 286
>gi|121705606|ref|XP_001271066.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
gi|119399212|gb|EAW09640.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
Length = 350
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 129/319 (40%), Gaps = 50/319 (15%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCG V+A+R+ H + + D +D PS N ++ D +
Sbjct: 43 TVCGSCGLVLADREIDMHSEWRTFSNDDQ----NNDDPSRVGDATNPLLNGDQLET---- 94
Query: 83 TAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDV 142
+ + SG+ +L R SS + + L AY +I +
Sbjct: 95 ---------------QIASGGSGRARDLYRAQNKQSSEKANKAL------LAAYKEIGAL 133
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+ ++ D A LF+ A + +S + + + A R+ + PRT EI
Sbjct: 134 CDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVT 193
Query: 203 NVPQKEIGKYIKILGEAL--QLSQPINSNSIAVHMP-------------------RFCTL 241
V +KEIG+ K L + Q + IN+ + +P RFC L
Sbjct: 194 KVTRKEIGRIYKALEKFFTAQNLERINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNL 253
Query: 242 LQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 301
L L +++ + + V R+P+SI AA IY+A L K+ EI +V ++
Sbjct: 254 LDLPYQVTSVSSALSDRVTTMGDLAGRSPLSIVAACIYMASYLMGHGKSAKEISQVAHVS 313
Query: 302 EVTLRKVYKELLENWDDLL 320
+ T+R YK+L + L+
Sbjct: 314 DGTIRGAYKQLYAERERLI 332
>gi|448561229|ref|ZP_21634581.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582139|ref|ZP_21645643.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448625327|ref|ZP_21671094.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445721461|gb|ELZ73129.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445731787|gb|ELZ83370.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445749089|gb|EMA00535.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 335
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 104/189 (55%), Gaps = 3/189 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+ A R A
Sbjct: 146 NLKQALGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAG 205
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + E+ + + + A +LS + ++PRF + L L+ +++
Sbjct: 206 VPRSLDEIAEVSRVEKSEVARTYRYI--ARELSLEVKPADPEQYVPRFASELGLSDESKM 263
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 264 RARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRYH 323
Query: 311 ELLENWDDL 319
ELLE ++L
Sbjct: 324 ELLEAEENL 332
>gi|42557795|emb|CAF28768.1| putative transcription initiation factor TFIIB [uncultured
crenarchaeote]
Length = 304
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 144/322 (44%), Gaps = 45/322 (13%)
Query: 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQ----------CQNHHLFHIRAQ-DT 50
+CP C +G T ++ + CG+CG V+ ER + H RA T
Sbjct: 11 RCPRC--GKGPMVTDNSSGEMF-CGNCGFVVTERIEETGPEWRAFSKEEHEDRSRAGIPT 67
Query: 51 PLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAEL 110
L + L +I P VD+D +G + S S + LR+ S S +
Sbjct: 68 SLAMHDMGLATIIGP-----VDKDA---SGKPLSASMKSTIER---LRTWDSRSQVHEPV 116
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLR 170
+R F S +D L+ L + D + + A ++R +R
Sbjct: 117 DRNFRQAFSE---------LDRLKDKLAVGDA---------VIEKAAYVYRKALEKGLVR 158
Query: 171 NRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNS 230
RS+ AL AAL A R+ + PRTL++I+ A+N+ +K++ + ++L L L P+
Sbjct: 159 GRSISALVAAALYAACRDTETPRTLKDIAHASNIKKKDVARCYRLLIRELDLKMPVVDPV 218
Query: 231 IAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKT 290
V R + L++ + A I + ++P+ ++AAA+Y+AC + + KT
Sbjct: 219 KCV--ARIASKSGLSEKTKRKALEILKKAEQGKISAGKDPMGLAAAALYVACVMNGENKT 276
Query: 291 QAEICKVTGLTEVTLRKVYKEL 312
Q ++ + G+TEVT+R YK L
Sbjct: 277 QKDVAEAAGVTEVTIRNRYKGL 298
>gi|354612022|ref|ZP_09029974.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191600|gb|EHB57106.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 317
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS GL + + A ++R L RS+E +AT+ + A R+A
Sbjct: 129 NLKQALGEIDRMASAQGLPDSVRETASVIYRRALEEDLLPGRSIEGVATSCVYAAARQAG 188
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L L P + S ++PRF + L+L+ A
Sbjct: 189 VPRSLDEIADVSRVEKAEIARTYRYVIRELGLEVAPADPES---YVPRFASSLELSDEAS 245
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + +K + ++P+ ++AAA+Y A L +++ TQA++ +V ++EVT+R Y
Sbjct: 246 HRARELLKTAKDKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAKVSEVADISEVTIRNRY 305
Query: 310 KELLE 314
ELLE
Sbjct: 306 HELLE 310
>gi|289582685|ref|YP_003481151.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281888|ref|ZP_21473181.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532238|gb|ADD06589.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577517|gb|ELY31950.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 317
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 128 NLKYALSEIDRMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEG 187
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++K +
Sbjct: 188 IPRSLEEVTSVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVSKEVE 244
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L D+ Q + T VT+R Y
Sbjct: 245 TRAVEIIDQTTDLGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRY 304
Query: 310 KELLENWD 317
+E L+ D
Sbjct: 305 REQLDAID 312
>gi|433590594|ref|YP_007280090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332002|ref|ZP_21521251.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384822|ref|ZP_21563557.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305374|gb|AGB31186.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445628140|gb|ELY81450.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445657826|gb|ELZ10650.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 319
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +ATA+L A R+
Sbjct: 130 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATASLYTACRKED 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L + +
Sbjct: 190 IPRSLEEVTAVSRVEQREIGRTYRYIADELGINLEPTNPRQF---VPRFCSELDVGTDVE 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L D+ Q + T VT+R Y
Sbjct: 247 TKAVEIIDRTTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRY 306
Query: 310 KELLENWD 317
+E LE D
Sbjct: 307 REQLEAID 314
>gi|448605946|ref|ZP_21658539.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445741269|gb|ELZ92773.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 335
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 104/189 (55%), Gaps = 3/189 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+ A R A
Sbjct: 146 NLKQALGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAG 205
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + E+ + + + A +LS + ++PRF + L L+ +++
Sbjct: 206 VPRSLDEIAEVSRVEKSEVARTYRYI--ARELSLEVKPADPEQYVPRFASELGLSDESKM 263
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 264 RARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRYH 323
Query: 311 ELLENWDDL 319
ELLE ++L
Sbjct: 324 ELLEAEENL 332
>gi|336471507|gb|EGO59668.1| hypothetical protein NEUTE1DRAFT_39488 [Neurospora tetrasperma FGSC
2508]
gi|350292608|gb|EGZ73803.1| cyclin-like protein [Neurospora tetrasperma FGSC 2509]
Length = 348
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 126/331 (38%), Gaps = 50/331 (15%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CGSCG V+ ER + + D +D PS N +D D Q T
Sbjct: 46 CGSCGLVLGERIIDTRSEWRTFSNDDQ----GNDDPSRVGDGPNQLIDGDQLQTT----- 96
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
+F G+ + L + T +S + ++AY I +
Sbjct: 97 ----------------IAFDGKNG---KNLSHLQNKITQDKNSKQL--MQAYRDIQGLTD 135
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
+ + + A +++ L+ +S EA+ + A R+ PRT +EI V
Sbjct: 136 SINAGTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTKV 195
Query: 205 PQKEIGKYIKILGEALQL------------------SQPINSNSIAVHMPRFCTLLQLNK 246
+KEIG+ K L LQ Q S + R+C+ L
Sbjct: 196 SKKEIGRVFKQLESFLQKIGGEEHAITTSIPTFNQQYQGKGSTTATELCARYCSNLNFRN 255
Query: 247 SAQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
S V +A + + R+P+S++AA IY+A + ++ +T +I V G+++ T
Sbjct: 256 SVAVEDVARQLADKTSTISELAGRSPLSVAAACIYMASHIRNESRTSKDIAAVAGVSDGT 315
Query: 305 LRKVYKELLENWDDLLPSNYTPAVPPEKAFP 335
++ Y+ L D LL + VP P
Sbjct: 316 VKTAYRLLYNKKDKLLEEIFPEGVPNLDKLP 346
>gi|346978629|gb|EGY22081.1| transcription initiation factor IIB [Verticillium dahliae VdLs.17]
Length = 352
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ +I + L ++ D A +++ C + ++ + EAL + A R+A RT
Sbjct: 132 AFREISAFTDSINLGKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIFIACRQAGVGRT 191
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----------------MPRF 238
+EI NV +KEIG+ K L LQ + N A+ RF
Sbjct: 192 FREIYQVTNVSKKEIGRVFKALESFLQKIKETNPGGNAIQDLSGYKASTSTNAEDLCTRF 251
Query: 239 CTLLQLNKSAQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK 296
+ L +S ++ ++ + ++ R+P+S+SAA IY+A L ++ KT +I
Sbjct: 252 TSQLPFRQSQKIENVSRALARKTVSVSELAGRSPLSVSAACIYMASHLMEEAKTSKDIAA 311
Query: 297 VTGLTEVTLRKVYKELLENWDDLLPSNY 324
V G+++ T++ YK L + + L+ +
Sbjct: 312 VAGVSDGTIKTAYKFLYQARERLIEKEW 339
>gi|292654958|ref|YP_003534855.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448292824|ref|ZP_21483145.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543167|ref|ZP_21624807.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550042|ref|ZP_21628647.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559604|ref|ZP_21633678.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572225|ref|ZP_21640218.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448596951|ref|ZP_21654089.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371057|gb|ADE03284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445571799|gb|ELY26342.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706914|gb|ELZ58784.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710994|gb|ELZ62789.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445713090|gb|ELZ64871.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445720817|gb|ELZ72488.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740832|gb|ELZ92337.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 335
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 104/189 (55%), Gaps = 3/189 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+ A R A
Sbjct: 146 NLKQALGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAG 205
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + E+ + + + A +LS + ++PRF + L L+ +++
Sbjct: 206 VPRSLDEIAEVSRVEKSEVARTYRYI--ARELSLEVKPADPEQYVPRFASELGLSDESKM 263
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 264 RARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRYH 323
Query: 311 ELLENWDDL 319
ELLE ++L
Sbjct: 324 ELLEAEENL 332
>gi|407464992|ref|YP_006775874.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048180|gb|AFS82932.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 11/211 (5%)
Query: 109 ELERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSAT 167
E +R F L ++ S++ + + + ++D ++S L L + + LFR +
Sbjct: 91 ENKRMFYRLRMWDRNSRSAISIKSFQKAFTLLDGISSKLALPESVVEETAYLFRKIAAKK 150
Query: 168 CLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS---- 223
L RS ++ A + R PRTLQ+I+ A N+ +K + + + L + L L
Sbjct: 151 ILAGRSTASMLCATVYITCRLTDTPRTLQDIANAGNIKKKNLQRIYRFLVKELDLYPEAY 210
Query: 224 QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQ 283
PI + R +Q+++ + LA I + + + T +NP+++ AAAI LA
Sbjct: 211 SPIE------FVNRVSKAVQISEKTERLAFKILHISMKEKVSTSKNPMAMVAAAINLASL 264
Query: 284 LEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ ++ TQ +I K++G++ VT+R + E+ E
Sbjct: 265 MNKEKVTQLKIAKISGISAVTIRNITNEIKE 295
>gi|448414464|ref|ZP_21577533.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445682030|gb|ELZ34454.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 340
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATA+L A R+A
Sbjct: 151 NLKQALGEIDRMASALGLPENVRETASVIYRRALGDDLLPGRSIEGVATASLYAAARQAG 210
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E+ + V + E+ + + + L+L +P + ++PRF + L ++ A+
Sbjct: 211 TPRSLDELETVSRVDKMELTRTYRYIVRELKLEIEPADPEQ---YVPRFASELGISDEAE 267
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + ++P+ ++AAA+Y A L +++ TQ+++ +V ++EVT+R Y
Sbjct: 268 RQAHTLLRGAKEVGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSEVASISEVTIRNRY 327
Query: 310 KELLE 314
KELLE
Sbjct: 328 KELLE 332
>gi|449549470|gb|EMD40435.1| hypothetical protein CERSUDRAFT_111033 [Ceriporiopsis subvermispora
B]
Length = 351
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 124/296 (41%), Gaps = 38/296 (12%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CG+CG V+ +R + A D D PS G DP
Sbjct: 52 CGTCGLVLGDRVVDTRSEWRTFAND------EGDDPS------RVGAASDP--------- 90
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
L+ L ++ SF + L R EL +++ S++S + L+A+ I +
Sbjct: 91 -----LMDGMEQLDTTISFRDGGSGLAR--ELQRAASRSSASRSERNLLQAFRDISNWCD 143
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
L I D A QL++ LR + ++A+ A + A R+A PRT +EI +V
Sbjct: 144 QFSLPKTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTHV 203
Query: 205 PQKEIGKYIKILGEALQL----------SQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+K +G+ K L +A L S P + + R+C L L + Q +
Sbjct: 204 SKKVLGQCYKALEQAFNLTPGASQDRHSSTPSGTTGPEDLLIRYCNHLDLPPNVQPICAD 263
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
+ + R+P+SI+ AIY C L K K +I V G++E T++ VY+
Sbjct: 264 VIKKARELGIADGRSPVSIAGGAIYFTCHLLGKVKPARDISSVAGVSEGTIKLVYR 319
>gi|448613363|ref|ZP_21663243.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740260|gb|ELZ91766.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 335
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 104/189 (55%), Gaps = 3/189 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+ A R A
Sbjct: 146 NLKQALGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAG 205
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + E+ + + + A +LS + ++PRF + L L+ +++
Sbjct: 206 VPRSLDEIAEVSRVEKSEVARTYRYI--ARELSLEVKPADPEQYVPRFASELGLSDESKM 263
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 264 RARKLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRYH 323
Query: 311 ELLENWDDL 319
ELLE ++L
Sbjct: 324 ELLEAEENL 332
>gi|389846232|ref|YP_006348471.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616151|ref|ZP_21664861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243538|gb|AFK18484.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750806|gb|EMA02243.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 335
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 104/189 (55%), Gaps = 3/189 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +AT+ A R A
Sbjct: 146 NLKQALGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAG 205
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI+ + V + E+ + + + A +LS + ++PRF + L L+ +++
Sbjct: 206 VPRSLDEIAEVSRVEKSEVARTYRYI--ARELSLEVKPADPEQYVPRFASELGLSDESKM 263
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + K + ++P+ ++AAA+Y A L +++ TQA + V ++EVT+R Y
Sbjct: 264 RARKLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRYH 323
Query: 311 ELLENWDDL 319
ELLE ++L
Sbjct: 324 ELLEAEENL 332
>gi|345006049|ref|YP_004808902.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321675|gb|AEN06529.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 324
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 103/188 (54%), Gaps = 11/188 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +ATA+L A R
Sbjct: 129 NLKQALGEIDRMASALGLPENVRETASVIYRRALAEDLLPGRSIEGIATASLHAAARMGN 188
Query: 191 EPRTLQEISIAANVPQ---KEIGKYI-KILGEALQLSQPINSNSIAVHMPRFCTLLQLNK 246
PR+L E++ + V Q K +YI + L +Q + P+ ++PRF + L+L+
Sbjct: 189 VPRSLDEMAAVSRVDQATFKRAYRYIVRELSLEVQPADPLE------YLPRFASELELSD 242
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A + E + + ++P+ ++AAAIY A L + TQ E+ VT ++EVT+R
Sbjct: 243 ETEHRARELLETAKRQNVHSGKSPVGLAAAAIYAAGVLCNDALTQTEVSDVTDMSEVTIR 302
Query: 307 KVYKELLE 314
Y+ELL+
Sbjct: 303 NRYQELLQ 310
>gi|408403989|ref|YP_006861972.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364585|gb|AFU58315.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 285
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 135/299 (45%), Gaps = 42/299 (14%)
Query: 25 CGSCGRVIAERQ----------CQNHHLFHIRAQD-TPLCLVTSDLPSIPQPQQNDGVDE 73
CG+CG V++ER + H RA T L + L +I P VD+
Sbjct: 12 CGNCGFVVSERIEELGPEWRAFSKEEHEDRSRAGIPTSLAMHDMGLATIIGP-----VDK 66
Query: 74 DPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNL 133
D +G + S S + LR+ S S ++R F S +D L
Sbjct: 67 DA---SGKPLSASMKSTIER---LRTWDSRSQVHEPVDRNFRQAFSE---------LDRL 111
Query: 134 RAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPR 193
+ L + D + + A ++R +R RS+ AL AAL A R+ + PR
Sbjct: 112 KDKLAVGDA---------VIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTETPR 162
Query: 194 TLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLAT 253
TL++I+ A+N+ +K++ + ++L L L P+ V R + L++ + A
Sbjct: 163 TLKDIANASNIKKKDVARCYRLLIRELDLKMPVVDPVKCV--ARIASKAGLSEKTKRKAL 220
Query: 254 HIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
I + ++P+ ++AAA+Y+AC + + KTQ ++ + G+TEVT+R YK L
Sbjct: 221 EILKKAEEGKISAGKDPMGLAAAALYVACVMNGENKTQKDVAEAAGVTEVTIRNRYKGL 279
>gi|190344839|gb|EDK36597.2| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 169 LRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQ------- 221
LR +S E++ A++ R+A R+ EI+ NVP+KE+G+ K + + LQ
Sbjct: 163 LRGKSQESIMAASICLGCRKANVGRSFLEIAALTNVPKKELGRVFKTMIQLLQEKHSNNP 222
Query: 222 -----LSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAA 276
QP++S S + RFC+ L L+ A +I ++ + R+PI+++A
Sbjct: 223 DVMHMTQQPVSSTSAEDLIRRFCSHLGLSTQISNAAEYIARRCKDEQILSGRSPITVAAT 282
Query: 277 AIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
IY+A + + + A I G+++ T++ YK L E D +L
Sbjct: 283 VIYMASLIFNVDVSPARIADKAGVSDGTIKTSYKVLFEEKDKIL 326
>gi|448474134|ref|ZP_21602102.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445818414|gb|EMA68273.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 237
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R S L RS+E +ATAAL A R+
Sbjct: 49 NLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQVG 108
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E + + V + E+ + + + L L QP + S ++PRF + L+L++ Q
Sbjct: 109 NPRSLDEFTAVSRVDKMELTRTYRYIIRELGLRVQPADPES---YVPRFVSRLELSEETQ 165
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
LA + + + + ++P+ ++A+A+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 166 RLARELLDGAKDAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSAVADISEVTIRNRY 225
Query: 310 KELLE 314
KELLE
Sbjct: 226 KELLE 230
>gi|448520817|ref|ZP_21618150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445702953|gb|ELZ54892.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 267
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 107/191 (56%), Gaps = 4/191 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
++SV+ A +I +AS LGL ++ + A ++R S L RS+E +ATAAL
Sbjct: 73 TASVIYRRALALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYA 132
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQ 243
A R+ PR+L E + + V + E+ + + + L L QP + S ++PRF + L
Sbjct: 133 AARQVGNPRSLDEFTAVSRVEKMELTRTYRYVVRELGLRVQPADPTS---YVPRFVSRLD 189
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L++ + A + E N + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EV
Sbjct: 190 LSEETERRARELLEDAANAGITSGKSPVGLAAAAVYAAALLSNEKVTQSEVSDVADVSEV 249
Query: 304 TLRKVYKELLE 314
T+R YKELLE
Sbjct: 250 TIRNRYKELLE 260
>gi|448318045|ref|ZP_21507583.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445600803|gb|ELY54805.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 319
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 130 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++K+ +
Sbjct: 190 IPRSLEEVTGVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVDKNVE 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L ++ Q + T VT+R Y
Sbjct: 247 SKAIEIIDETTTQGLHSGKSPTGFAAAAIYAAGLLCEETIPQRAVADTAQTTVVTVRNRY 306
Query: 310 KELLENWD 317
+E LE D
Sbjct: 307 REQLEAID 314
>gi|76801766|ref|YP_326774.1| transcription initiation factor TFB 3 [Natronomonas pharaonis DSM
2160]
gi|76557631|emb|CAI49214.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 319
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 109/190 (57%), Gaps = 5/190 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E ++TA++ A R+A
Sbjct: 130 NLKQALGEIDRMASALGLPDNVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + EI + + + L L QP + S ++PRF + L+L++ A+
Sbjct: 190 VPRSLDEVAGVSRVEKSEIARTYRYVVRELGLEVQPADPES---YVPRFASELELSEEAE 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 247 NRARQLLQNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKTTQAAVSEVADISEVTIRNRY 306
Query: 310 KELLENWDDL 319
ELLE DL
Sbjct: 307 HELLEAEQDL 316
>gi|302412198|ref|XP_003003932.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
gi|261357837|gb|EEY20265.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
Length = 352
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ +I + L ++ D A +++ C + ++ + EAL + A R+A RT
Sbjct: 132 AFREISAFTDSINLGKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIFIACRQAGVGRT 191
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----------------MPRF 238
+EI NV +KEIG+ K L LQ + N A+ RF
Sbjct: 192 FREIYQVTNVSKKEIGRVFKALESFLQKIKETNPGGNAIQDLSGYKASTSTNAEDLCTRF 251
Query: 239 CTLLQLNKSAQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK 296
+ L +S ++ ++ + ++ R+P+S+SAA IY+A L ++ KT +I
Sbjct: 252 TSQLPFRQSQKIENVSRALARKTVSVSELAGRSPLSVSAACIYMASHLMEEPKTSKDIAA 311
Query: 297 VTGLTEVTLRKVYKELLENWDDLLPSNY 324
V G+++ T++ YK L + + L+ +
Sbjct: 312 VAGVSDGTIKTAYKFLYQARERLIEKEW 339
>gi|448455066|ref|ZP_21594392.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
gi|445814181|gb|EMA64149.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
Length = 333
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R S L RS+E +ATAAL A R+
Sbjct: 145 NLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQDG 204
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E + + V + E+ + + + L+L QP + S ++PRF + L L++ Q
Sbjct: 205 NPRSLDEFTAVSRVDKMELTRTYRYVIRELKLEIQPADPES---YVPRFVSRLDLSEETQ 261
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
LA + + + ++P+ ++A+A+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 262 RLARELLDGAKRAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSAVADISEVTIRNRY 321
Query: 310 KELLE 314
KELL+
Sbjct: 322 KELLD 326
>gi|260941562|ref|XP_002614947.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851370|gb|EEQ40834.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 349
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + L + D A ++++ LR +S E++ AA+ R+A+ RT
Sbjct: 129 AYAKISQMCDGYQLPKIVQDGAKEVYKLVHDERLLRGKSQESIMAAAIFIGCRKAKVART 188
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAV--------------HMPRFCT 240
+EI NVP+KEIGK KI+ +Q N + ++ + RFC+
Sbjct: 189 FKEIWALTNVPKKEIGKVFKIIKRVIQEKNETNPGAYSLIKDSEQTTQTSAEDLIRRFCS 248
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L+ A +I R+PI+I+A IY+ L T ++I TG+
Sbjct: 249 HLGLSNEVTNAAEYIARRCKESGILAGRSPITIAATVIYMTSLLFGAEVTPSKIANKTGV 308
Query: 301 TEVTLRKVYKELLENWDDLL 320
++ T++ K + E+ + L+
Sbjct: 309 SDGTIKTSLKVMYEDREKLI 328
>gi|354611558|ref|ZP_09029514.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196378|gb|EHB61880.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 325
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 3/184 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I ++S LGL ++ + A ++R S L RS+E +AT+AL A R+ Q
Sbjct: 138 NLKQALGEIERMSSALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATSALYAAARQMQ 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR++ E++ + + E + + + L L + A ++PRF + L L +
Sbjct: 198 TPRSIDEVANVSRIDAMEFKRTYRYIVRELGLE--VAPADPASYVPRFASELDLPDEVER 255
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + ++P+ ++AAAIY A L + + TQ+++ VT ++EVT+R Y+
Sbjct: 256 RARELLDNAQKDGVTSGKSPVGLAAAAIYAASLLTNHKVTQSQVSDVTDVSEVTIRNRYQ 315
Query: 311 ELLE 314
ELLE
Sbjct: 316 ELLE 319
>gi|448512194|ref|ZP_21616308.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445694514|gb|ELZ46639.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
Length = 263
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 11/192 (5%)
Query: 131 DNLR-------AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALV 183
DN+R A +I +AS LGL ++ + A ++R S L RS+E +ATAAL
Sbjct: 68 DNVRETASVIXALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALY 127
Query: 184 QAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLL 242
A R+ PR+L E + + V + E+ + + + L L QP + S ++PRF + L
Sbjct: 128 AAARQVGNPRSLDEFTAVSRVEKMELTRTYRYVVRELGLRVQPADPTS---YVPRFVSRL 184
Query: 243 QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
L++ + A + E N + ++P+ ++AAA+Y A L +++ TQ+E+ V ++E
Sbjct: 185 DLSEETERRARELLEDAANAGITSGKSPVGLAAAAVYAAALLSNEKVTQSEVSDVADVSE 244
Query: 303 VTLRKVYKELLE 314
VT+R YKELLE
Sbjct: 245 VTIRNRYKELLE 256
>gi|345004538|ref|YP_004807391.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344320164|gb|AEN05018.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 330
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL + + A ++R L RS+E ++TAAL A R+A
Sbjct: 141 NLKQALGEIDRMASALGLPESVRETASVIYRRALGEDLLPGRSIEGVSTAALYAAARKAG 200
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + EI + + + L+L QP + ++PRF + L L+ A+
Sbjct: 201 TPRSLDEISAVSRVEKDEIARTYRYVVRELKLEIQPADPEQ---YVPRFASDLGLSDEAE 257
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+E+ +V ++EVT+R Y
Sbjct: 258 RRARQLLQTAKEQEVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSEVANISEVTIRNRY 317
Query: 310 KELLE 314
ELLE
Sbjct: 318 HELLE 322
>gi|146422766|ref|XP_001487318.1| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 169 LRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQ------- 221
LR +S E++ A++ R+A R+ EI+ NVP+KE+G+ K + + LQ
Sbjct: 163 LRGKSQESIMAASICLGCRKANVGRSFLEIAALTNVPKKELGRVFKTMIQLLQEKHSNNP 222
Query: 222 -----LSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAA 276
QP++S S + RFC+ L L+ A +I ++ + R+PI+++A
Sbjct: 223 DVMHMTQQPVSSTSAEDLIRRFCSHLGLSTQISNAAEYIARRCKDEQILSGRSPITVAAT 282
Query: 277 AIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
IY+A + + + A I G+++ T++ YK L E D +L
Sbjct: 283 VIYMASLIFNVDVSPARIADKAGVSDGTIKTSYKVLFEEKDKIL 326
>gi|50422739|ref|XP_459946.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
gi|49655614|emb|CAG88192.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
Length = 346
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
D A ++++ L+ +S E++ AA+ R+A+ R+ +EI NVP+KEIGK
Sbjct: 148 DGAKEVYKLVYEERPLKGKSQESIMAAAIFIGCRKAKVARSFKEIWALTNVPRKEIGKVF 207
Query: 214 KILGEALQLSQPINSNSIAV--------------HMPRFCTLLQLNKSAQVLATHIGEVV 259
KI+ + +Q N N+ ++ + RFC+ L L+ A HI
Sbjct: 208 KIMNKIIQEKNAANPNAYSLIQDNMQTTQTSAEDLIRRFCSHLGLSTQVTNAAEHIARRC 267
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319
+ R+PI+I+A IY+A + ++I TG+++ T++ YK + E + L
Sbjct: 268 KDVGVLAGRSPITIAATVIYMAALVFGADLQPSKIADKTGVSDGTIKTSYKVMYEEKERL 327
Query: 320 L 320
+
Sbjct: 328 I 328
>gi|412985634|emb|CCO19080.1| predicted protein [Bathycoccus prasinos]
Length = 396
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 14/209 (6%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ QI D+A + ++ I A +L++ S+ + +S A+ A L A R+ +
Sbjct: 116 MAAFSQIGDMADRMAMNQTIKSGACELYKVVTSSHSTQGKSSVAMFAACLYIACRQEGKT 175
Query: 193 RTLQEISIAA-NVPQKEIGK---YIKILGEALQLSQPINSNSIAVHM--PRFCTLLQLNK 246
RT +EI AA KEIG+ +I + E L L +N I + RFC L L
Sbjct: 176 RTFKEICGAAVGSTVKEIGRCYRFIIRVCEGLDLQMQMNEQMITPELLTNRFCGNLGLAN 235
Query: 247 SA--QVLATHIG---EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ--AEICKVTG 299
S +V ++ I E+ + + +++ P SI+AAAIYLA + DK+ ++I V+G
Sbjct: 236 SEFIRVCSSAIQKFREIKTGEGY-SQKQPASIAAAAIYLATNILDKKDIANVSQISAVSG 294
Query: 300 LTEVTLRKVYKELLENWDDLLPSNYTPAV 328
+ E T+R Y ++L + LLP Y V
Sbjct: 295 MAEQTIRNSYVDMLPYLERLLPEAYNDRV 323
>gi|313124866|ref|YP_004035130.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448287275|ref|ZP_21478488.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312291231|gb|ADQ65691.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445572483|gb|ELY27021.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 296
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 2/181 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ +I + S L L I DHA LF+ + LR RS+E A A + A R A RT
Sbjct: 117 AFTEIRRLTSALSLPERIRDHACSLFKSAQNEDLLRGRSLEGFAAACVYAACRVANVSRT 176
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ E+ A + E L L L P+ ++PRF + L L++ + A
Sbjct: 177 VGEVVAEAKATEAEQSAAYDALNRDLGL--PVGPVDPVEYVPRFASRLDLSRDVERRARE 234
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ RNP ++A +Y A + D TQ E V +T VTLRK Y L +
Sbjct: 235 YAAEAAEQGLSVGRNPSGVAAGCLYTAARDLDVEVTQTEAADVADVTPVTLRKTYVALRD 294
Query: 315 N 315
+
Sbjct: 295 D 295
>gi|440638525|gb|ELR08444.1| transcription initiation factor TFIIB [Geomyces destructans
20631-21]
Length = 349
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 24/230 (10%)
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN 171
R+ +L + S + L AY +I +G+ D A LF+ A +
Sbjct: 105 RSRDLQRAQNKSAHDKGTKNLLAAYKEIGAHCDAIGIPKTGADVAKHLFKMVDDAKAFKG 164
Query: 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKIL--------------- 216
+S EAL + A R++ PRT +EI V +K+IG+ K L
Sbjct: 165 KSQEALIAGCIFIACRQSGVPRTFREIYALTKVSKKDIGRTFKALEKFFASDENKAALTN 224
Query: 217 -----GEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV-LATHIGEVVINKCFCTRRNP 270
+A Q + N+ + V RFC+ L L+ V ++ + + V R+P
Sbjct: 225 GSLAQTDAYQATTSTNAVDLVV---RFCSQLGLHGQQFVKVSQGLADKVSTMGDLAGRSP 281
Query: 271 ISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
+S++AA IY+A L K K+ EI + G+++ T+R YK L ++ + LL
Sbjct: 282 LSVAAACIYMASHLLGKPKSAREIGNMAGVSDGTIRTAYKFLYQDRERLL 331
>gi|222479036|ref|YP_002565273.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451938|gb|ACM56203.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 324
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS GL ++ + A ++R L RS+E ++T+ + A R A
Sbjct: 136 NLKQALGEIDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L +P + ++PRF + L+L++ ++
Sbjct: 196 VPRSLDEIADVSRVEKAEIARTYRYVVRELKLEVKPADPEQ---YVPRFASDLELSEESE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 253 MRAKSLLRNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Query: 310 KELLENWDDLL 320
ELLE D L+
Sbjct: 313 HELLEAEDGLV 323
>gi|126459199|ref|YP_001055477.1| transcription initiation factor IIB [Pyrobaculum calidifontis JCM
11548]
gi|126248920|gb|ABO08011.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
calidifontis JCM 11548]
Length = 331
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 6/216 (2%)
Query: 101 HSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ----IIDVASILGLDYDICDHA 156
SG+ +++R E++ T + V R ++Q + + S +G+ + A
Sbjct: 107 RDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLKSSMGVPRPCVEQA 166
Query: 157 FQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKIL 216
+++R +R RSVEA+A AAL A R + PR L E+ ++E+ + ++L
Sbjct: 167 LEIYRQALEKELVRGRSVEAMAAAALYMACRMLKMPRPLDELVRYTKASRREVARCYRLL 226
Query: 217 GEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAA 276
L + PI+ +++ R L+L+ A LA I + ++P ++AA
Sbjct: 227 LRELNVKVPISDP--VLYISRIAEQLKLSGEAIKLAIDILQKAKKAGITAGKDPAGLAAA 284
Query: 277 AIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
A+Y+A + KTQ + G+TEVT+R YKEL
Sbjct: 285 AVYIASLMLGDNKTQKDFAVAAGVTEVTVRNRYKEL 320
>gi|448488467|ref|ZP_21607303.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445696157|gb|ELZ48250.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 324
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS GL ++ + A ++R L RS+E ++T+ + A R A
Sbjct: 136 NLKQALGEIDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L +P + ++PRF + L+L++ ++
Sbjct: 196 VPRSLDEIADVSRVEKAEIARTYRYVVRELKLEVKPADPEQ---YVPRFASDLELSEESE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 253 MRAKSLLRNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Query: 310 KELLENWDDLL 320
ELLE D L+
Sbjct: 313 HELLEAEDGLV 323
>gi|315426667|dbj|BAJ48293.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|315428010|dbj|BAJ49599.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|343485421|dbj|BAJ51075.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
Length = 307
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 4/204 (1%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIIDV-ASILGLDYDICDHAFQLFRDCCSATCL 169
E+ L TS +S NL+ + I+ + L L + + A ++R A +
Sbjct: 97 EKMIRLKKLDATSQINSSETRNLQQAVNILQIYVDKLRLSQTVAERAMLIYRRALRAGLV 156
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAA-NVPQKEIGKYIKILGEALQLSQPINS 228
R RS++++ AA A R PR L+E + V +K I + ++L + L L P+
Sbjct: 157 RGRSIKSIMAAATYAACRMLGTPRDLREFERSYPAVKRKTIAQGYRLLLKHLGLKVPVAD 216
Query: 229 NSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKR 288
SI V+ + + L++ A + + + ++P+ I+AAA+Y+ACQ +
Sbjct: 217 PSIYVN--KIAAKVGLDQRTVQEAIRLLNEAVKRKATVGKDPVGIAAAALYMACQETTQN 274
Query: 289 KTQAEICKVTGLTEVTLRKVYKEL 312
TQ +I K G+TEVT+R +K L
Sbjct: 275 LTQKDIAKAAGVTEVTVRNRFKGL 298
>gi|336373760|gb|EGO02098.1| hypothetical protein SERLA73DRAFT_177837 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386576|gb|EGO27722.1| hypothetical protein SERLADRAFT_461642 [Serpula lacrymans var.
lacrymans S7.9]
Length = 347
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 124/295 (42%), Gaps = 40/295 (13%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPS-IPQPQQNDGVDEDPFQPTGFIT 83
CGSCG V+ +R + A D D PS + +G+++
Sbjct: 52 CGSCGLVLGDRIVDTRSEWRTFANDE------GDDPSRVGAASDLEGIEQ---------- 95
Query: 84 AFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVA 143
L ++ SF + + R EL +++ S SS + L A+ I
Sbjct: 96 -------------LDTAISFRDGGSGIAR--ELQRAASRSQSSRSERNLLAAFRDIGSWC 140
Query: 144 SILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAAN 203
L I D A QL++ LR + +EA+ A + A R+A PRT +EI +
Sbjct: 141 DQFSLPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH 200
Query: 204 VPQKEIGKYIKILGEALQLSQPINSNSIAVH--------MPRFCTLLQLNKSAQVLATHI 255
V +K +G+ K L +A L+ +++ A + R+C L L + Q + I
Sbjct: 201 VSKKTLGQCYKALEQAFNLAPGASAHQSATAPSSGPENLLVRYCNHLDLPPNVQSICGDI 260
Query: 256 GEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
R+P+SI+ AIY C L K K+ +I V G++E T++ VY+
Sbjct: 261 IVEARKHGIADGRSPVSIAGGAIYFTCLLLGKPKSARDISAVAGVSEGTIKLVYR 315
>gi|448468113|ref|ZP_21599744.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445810856|gb|EMA60870.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 324
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS GL ++ + A ++R L RS+E ++T+ + A R A
Sbjct: 136 NLKQALGEIDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L +P + ++PRF + L+L++ ++
Sbjct: 196 VPRSLDEIADVSRVEKAEIARTYRYVVRELKLEVKPADPEQ---YVPRFASDLELSEESE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 253 MRAKSLLRNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Query: 310 KELLENWDDLL 320
ELLE D L+
Sbjct: 313 HELLEAEDGLV 323
>gi|448445487|ref|ZP_21590385.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685011|gb|ELZ37373.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS GL ++ + A ++R L RS+E ++T+ + A R A
Sbjct: 136 NLKQALGEIDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L +P + ++PRF + L+L++ ++
Sbjct: 196 VPRSLDEIADVSRVEKAEIARTYRYVVRELKLEVKPADPEQ---YVPRFASDLELSEESE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 253 MRAKSLLRNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Query: 310 KELLENWDDLL 320
ELLE D L+
Sbjct: 313 HELLEAEDGLV 323
>gi|448456468|ref|ZP_21595237.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811944|gb|EMA61941.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 324
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS GL ++ + A ++R L RS+E ++T+ + A R A
Sbjct: 136 NLKQALGEIDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L +P + ++PRF + L+L++ ++
Sbjct: 196 VPRSLDEIADVSRVEKAEIARTYRYVVRELKLEVKPADPEQ---YVPRFASDLELSEESE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 253 MRAKSLLRNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Query: 310 KELLENWDDLL 320
ELLE D L+
Sbjct: 313 HELLEAEDGLV 323
>gi|448739674|ref|ZP_21721686.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445799293|gb|EMA49674.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 355
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 102/188 (54%), Gaps = 3/188 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I +AS LG+ D+ + A ++R S L RS+E ++TAAL IR+
Sbjct: 161 NLKQALGEIERMASALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMG 220
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+++E+ + V + E + + + + L L I + ++ RF + L +++ +
Sbjct: 221 LPRSVEEVGAVSRVDEMEFKRAYRYINQELDLE--IGPPNPEQYVSRFASDLDVSEETER 278
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + E + + ++P+ ++ AA+Y A L +++ TQ E+ +V ++ VT+R Y
Sbjct: 279 RARDLLETAERQAVHSGKSPVGLAGAALYAAGILTNRKLTQDEVSEVAEVSNVTIRNRYH 338
Query: 311 ELLENWDD 318
EL+E +D
Sbjct: 339 ELMEVAED 346
>gi|402226301|gb|EJU06361.1| TFIIB-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 358
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 127/318 (39%), Gaps = 47/318 (14%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CGSCG V+ +R + R++ D PS G DP
Sbjct: 53 CGSCGMVLGDR------IIDTRSEWRTFANEEGDDPS------RVGAASDP--------- 91
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTS-TSSSVMMDNLRAYLQIIDVA 143
L+ L + SF + L R + S+ T + MM+ + Q D
Sbjct: 92 -----LMDGMEQLDTVISFQDGGSGLARELQRASAKTQAFKDGKTMMEGFKKISQFCDSI 146
Query: 144 SILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAAN 203
S+ + I D A QL++ L+ + ++A+ A + A R+ PRT +EI
Sbjct: 147 SLPKV---ISDTAKQLYKRVEEDRILKGKRMDAIVAACIFIACRQGHVPRTFREICNITK 203
Query: 204 VPQKEIGKYIKILGEALQLS----QPINSNSIAVHM-------------PRFCTLLQLNK 246
V +K +G+ K + +L+ ++N + +H+ PRFC L L
Sbjct: 204 VNKKALGQCYKAMEAYFRLNVSGGATSSTNRVDIHLAGSGSKASAEELIPRFCNHLGLPV 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
S + I + R+PISI+ AIY L + K +I +V ++E T++
Sbjct: 264 SLERSCVQIIVNAREQGVNAGRSPISIAGGAIYFTTHLLGQAKHARDISRVVNVSESTIK 323
Query: 307 KVYKELLENWDDLLPSNY 324
VYK + + L+P +
Sbjct: 324 LVYKGFVAAKEKLVPKEW 341
>gi|448503531|ref|ZP_21613160.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445691732|gb|ELZ43915.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 324
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS GL ++ + A ++R L RS+E ++T+ + A R A
Sbjct: 136 NLKQALGEIDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L +P + ++PRF + L+L++ ++
Sbjct: 196 VPRSLDEIADVSRVEKAEIARTYRYVVRELKLEVKPADPEQ---YVPRFASDLELSEESE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 253 MRAKSLLRNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Query: 310 KELLENWDDLL 320
ELLE D L+
Sbjct: 313 HELLEAEDGLV 323
>gi|448314502|ref|ZP_21504190.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445594820|gb|ELY48961.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 316
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT++L A R+
Sbjct: 128 NLKYALSEIDRMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSSLYTACRKED 187
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++K +
Sbjct: 188 IPRSLEEVTAVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVSKDVE 244
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + ++ + ++P +AAAIY A L ++ Q + T VT+R Y
Sbjct: 245 TKAVEIIDRTTDQGLHSGKSPTGFAAAAIYAAGLLCEETIPQRAVADTAQTTVVTVRNRY 304
Query: 310 KELLENWD 317
+E L+ D
Sbjct: 305 REQLDAID 312
>gi|448472540|ref|ZP_21601164.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819844|gb|EMA69678.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 323
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS GL ++ + A ++R L RS+E ++T+ + A R A
Sbjct: 135 NLKQALGEIDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAG 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L +P + ++PRF + L+L++ ++
Sbjct: 195 VPRSLDEIADVSRVEKAEIARTYRYVVRELKLEVKPADPEQ---YVPRFASDLELSEESE 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 252 MRAKSLLRNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 311
Query: 310 KELLENWDDLL 320
ELLE D L+
Sbjct: 312 HELLEAEDGLV 322
>gi|413946339|gb|AFW78988.1| hypothetical protein ZEAMMB73_349781 [Zea mays]
Length = 311
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 116/265 (43%), Gaps = 24/265 (9%)
Query: 70 GVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSG-QLAELERTFEL----LSSSTTST 124
G D DP + G F L PL + +++G Q A+ E L +S+S +
Sbjct: 56 GEDRDPSRVGGSSDPF----LANMPLV--TQIAYAGPQKAQGEGGHALPRLHVSASGGAG 109
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCL--RNRSVEALATAAL 182
+++ A I D+A LGL I D A +++ A R + +A A L
Sbjct: 110 GEQTLVEGFHA---IADMADRLGLVATIRDRAKDVYKRLGEARACPGRGKKRDAFYAACL 166
Query: 183 VQAIREAQEPRTLQEISIAAN---VPQKEIGKYI----KILGEALQLSQPINSNSIAVHM 235
A R +PRT +E++ + +KEIGK K+LGE I + +M
Sbjct: 167 YVACRNEGKPRTYKELATVTSDGAAAKKEIGKMTMLIKKVLGEEAGQVMDIGVVRPSDYM 226
Query: 236 PRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC 295
RFC+ L + A + N RRNP SI+AA Y+ Q KT ++
Sbjct: 227 RRFCSRLGMGNREMRAAQEAARRLENG-LDVRRNPESIAAAISYMVVQRTGAGKTVRDVS 285
Query: 296 KVTGLTEVTLRKVYKELLENWDDLL 320
TG+ EVT+++ +K+L + + L
Sbjct: 286 MATGVAEVTIKEAHKDLTPHAEKLF 310
>gi|406607062|emb|CCH41577.1| Transcription initiation factor IIB [Wickerhamomyces ciferrii]
Length = 339
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 12/183 (6%)
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
D A Q ++ L+ +S E++ A +V R+AQ RT +EI VP+KEIG+
Sbjct: 142 DGAKQAYKLSHDEKALKGKSQESIMAAVIVVGCRKAQVDRTFKEICTLTRVPKKEIGRVF 201
Query: 214 KILGEALQLSQPINSNSIAVH------------MPRFCTLLQLNKSAQVLATHIGEVVIN 261
I+ + L+ + +A + RFC+ L L+ A HI + +
Sbjct: 202 VIIKKILEQKNQTTTTYMAQENIQSSQTSAEDLIRRFCSHLGLSIQLSNAAEHIAKRCKD 261
Query: 262 KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
R+PI+I+AA IY+ + A+I + G+++ T++ YK L EN ++L+
Sbjct: 262 VGVLAGRSPITIAAAVIYMVVLIFKADLAPAKIAEKLGVSDGTIKTSYKFLYENKEELID 321
Query: 322 SNY 324
N+
Sbjct: 322 PNW 324
>gi|448428447|ref|ZP_21584259.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448450283|ref|ZP_21592182.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448481624|ref|ZP_21604975.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448507517|ref|ZP_21615028.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448523267|ref|ZP_21618620.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|448530980|ref|ZP_21620814.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|155212686|gb|ABT17407.1| transcription initiation factor TFB [Halorubrum sp. TP009]
gi|445676412|gb|ELZ28934.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445698472|gb|ELZ50516.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445701666|gb|ELZ53642.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445707420|gb|ELZ59274.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445812135|gb|EMA62131.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445821877|gb|EMA71661.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 324
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS GL ++ + A ++R L RS+E ++T+ + A R A
Sbjct: 136 NLKQALGEIDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L +P + ++PRF + L+L++ ++
Sbjct: 196 VPRSLDEIADVSRVEKAEIARTYRYVVRELKLEVKPADPEQ---YVPRFASDLELSEESE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 253 MRAKSLLRNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Query: 310 KELLENWDDLL 320
ELLE D L+
Sbjct: 313 HELLEAEDGLV 323
>gi|448435246|ref|ZP_21586723.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445684070|gb|ELZ36456.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 324
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS GL ++ + A ++R L RS+E ++T+ + A R A
Sbjct: 136 NLKQALGEIDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EI+ + V + EI + + + L+L +P + ++PRF + L+L++ ++
Sbjct: 196 VPRSLDEIADVSRVEKAEIARTYRYVVRELKLEVKPADPEQ---YVPRFASDLELSEESE 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+ A + K + ++P+ ++AAA+Y A L +++ TQA + +V ++EVT+R Y
Sbjct: 253 MRAKSLLRNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Query: 310 KELLENWDDLL 320
ELLE D L+
Sbjct: 313 HELLEAEDGLV 323
>gi|222478511|ref|YP_002564748.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451413|gb|ACM55678.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 330
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + L L + D A LF + LR RS+E A A + A R A RT
Sbjct: 152 AYTEIRRLTGALELPDSVRDTACTLFASAQDESLLRGRSLEGFAAACVYVACRTADVART 211
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
+ EI A + E + L L PI A ++PRF + L + + A
Sbjct: 212 VGEICAEAKATEAEHRAAFDAMNRELGL--PIAPTGPAEYLPRFASELDCDADVERRAGE 269
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ + + + RNP+ ++AA +Y A + TQ E V +T VT+R+ Y +L E
Sbjct: 270 LAKRAVEEGISNGRNPVGVAAACLYTAARELGAECTQQEAADVADVTPVTVRRTYVDLTE 329
>gi|242088689|ref|XP_002440177.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
gi|241945462|gb|EES18607.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
Length = 311
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 85/187 (45%), Gaps = 10/187 (5%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFR--DCCSATCLRNRSVEALATAALVQAIREAQEP 192
A+ I D+A LGL I D A +++ D A R + + A L A R +P
Sbjct: 117 AFHAIADMADRLGLVGTIRDRAKDVYKRLDEAKACPTRGKKRDVFYAACLYVACRNEGKP 176
Query: 193 RTLQE---ISIAANVPQKEIGKYI----KILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
RT +E ++ A +KEIGK K+LGE I A +M RFC+ L +
Sbjct: 177 RTYKELATVTAAGASAKKEIGKMTTLIKKVLGEEAGQVMDIGVVRAADYMRRFCSRLGMG 236
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
A + N RRNP SI+AA Y+ Q KT ++ TG+ E T+
Sbjct: 237 NQEMRAAQEAARRLENG-LDVRRNPESIAAAISYMVVQRAGAGKTVRDVSMATGVAEATI 295
Query: 306 RKVYKEL 312
++ +K+L
Sbjct: 296 KEAHKDL 302
>gi|352682668|ref|YP_004893192.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
gi|269990954|emb|CAP46908.1| transcription initiation factor IIB [Thermoproteus tenax Kra 1]
gi|350275467|emb|CCC82114.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
Length = 332
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 14/229 (6%)
Query: 101 HSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ----IIDVASILGLDYDICDHA 156
SG+ +L+R E++ T + V R ++Q + + S +G+ + A
Sbjct: 108 RDVSGKELDLKRKLEVIRLRKWQTRARVQTSYERNFVQAAQELERLKSSMGVPRPCVEQA 167
Query: 157 FQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKIL 216
+++R +R RSVEA+A AAL A R + PR L E+ ++E+ + ++L
Sbjct: 168 LEIYRQALEKELVRGRSVEAMAAAALYMACRMLKTPRPLDELIRYTKASRREVARCYRLL 227
Query: 217 GEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKC----FCTRRNPIS 272
L + PI+ +++ R L+L + V+ T I +IN+ ++P
Sbjct: 228 LRELNVRVPISDP--VLYISRVAEQLKL--TGDVVKTAID--IINRAKKAGLTAGKDPAG 281
Query: 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
++AAA+Y+A L +TQ + G+TEVT+R YKEL + D +P
Sbjct: 282 LAAAAVYIASLLHGDNRTQKDFAVAAGVTEVTVRNRYKELAKALDIKIP 330
>gi|342879738|gb|EGU80975.1| hypothetical protein FOXB_08534 [Fusarium oxysporum Fo5176]
Length = 345
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 18/223 (8%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++AY +I+ + + ++ + A +F+ L+ + EA+ + A R+ P
Sbjct: 121 MQAYKEIVSYCEAINMGTNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVP 180
Query: 193 RTLQEISIAANVPQKEIGKYIKIL-----------GEALQLSQPINSNSIAVHMP----R 237
RT +EI +V +KE+G+ K L GEA L+ N + +V R
Sbjct: 181 RTFREIFNLTSVSKKEVGRVFKQLQSFLQKLQDQDGEATGLNTVTNYENTSVGAEDLCGR 240
Query: 238 FCTLLQLNKSAQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC 295
+ + L K ++ ++ + E N R+P+S++AA IY+ACQ+ + ++ I
Sbjct: 241 YVSQLGFTKQNKISKISRSLAERANNISALAGRSPLSVAAACIYMACQIVGESRSSLPIA 300
Query: 296 KVTGLTEVTLRKVYKELLENWDDLLPSN-YTPAVPPEKAFPTT 337
K G+++ T++ YK L + L+ + EK P T
Sbjct: 301 KQAGVSDGTVKTAYKHLYAAREQLITKEWFEGGASMEKLTPAT 343
>gi|327311923|ref|YP_004338820.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
gi|326948402|gb|AEA13508.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
Length = 317
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 14/226 (6%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ----IIDVASILGLDYDICDHAFQL 159
SG+ +L+R E++ T + V R ++Q + + S +G+ + A ++
Sbjct: 96 SGKELDLKRKLEVIRLRKWQTRARVQTSYERNFVQAAQELERLKSAMGVPRPCVEQALEI 155
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R +R RSVEA+A AAL A R + PR L E+ ++E+ + ++L
Sbjct: 156 YRQALEKELVRGRSVEAMAAAALYMACRMLKTPRPLDELIRFTKASRREVARCYRLLLRE 215
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKC----FCTRRNPISISA 275
L + PI+ +++ R L+L + V+ T I +INK ++P ++A
Sbjct: 216 LNVRVPISDP--VLYISRVAEQLKL--TGDVVKTAID--IINKAKKAGLTAGKDPAGLAA 269
Query: 276 AAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
AA+Y+A L +TQ + G+TEVT+R YKEL + D +P
Sbjct: 270 AAVYIASLLHGDNRTQKDFAIAAGVTEVTVRNRYKELAKALDIKIP 315
>gi|336270348|ref|XP_003349933.1| hypothetical protein SMAC_00825 [Sordaria macrospora k-hell]
gi|380095322|emb|CCC06795.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 348
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 125/331 (37%), Gaps = 50/331 (15%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CG CG V+ ER + + D +D PS N +D D Q T
Sbjct: 46 CGDCGLVLGERIIDTRSEWRTFSNDDQ----GNDDPSRVGDGPNQLIDGDQLQTT----- 96
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
+F G+ + L + T +S + ++AY I +
Sbjct: 97 ----------------IAFDGKNG---KNLSHLQNKITQDKNSKQL--MQAYRDIQGLTD 135
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
+ + + A +++ L+ +S EA+ + A R+ PRT +EI V
Sbjct: 136 SINAGTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTKV 195
Query: 205 PQKEIGKYIKILGEALQL------------------SQPINSNSIAVHMPRFCTLLQLNK 246
+KEIG+ K L LQ Q S + R+C+ L
Sbjct: 196 SKKEIGRVFKQLESFLQKIGGEEHAITTSIPTFNQQYQGKGSTTATELCARYCSNLNFRN 255
Query: 247 SAQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
S V +A + + R+P+S++AA IY+A + ++ +T EI V G+++ T
Sbjct: 256 SVAVEDVARQLADKTSTISELAGRSPLSVAAACIYMASHIRNESRTSKEIAAVAGVSDGT 315
Query: 305 LRKVYKELLENWDDLLPSNYTPAVPPEKAFP 335
++ Y+ L D LL + VP P
Sbjct: 316 VKTAYRLLHNKKDKLLEEIFPEGVPNLDKLP 346
>gi|161528848|ref|YP_001582674.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340149|gb|ABX13236.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 95/178 (53%), Gaps = 2/178 (1%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A L++ + L L I + A ++R ++ RS+ +L A L A RE++ PRT
Sbjct: 127 ALLELSKMKEKLSLSDAIAEKASYIYRKALEKKLVKGRSIASLVAACLYAACRESEAPRT 186
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATH 254
L+E++ + + +KEI +++ + L L P+ +S++ + + + +L++ + A
Sbjct: 187 LREVAASIGIKRKEISATYRLIFKELDLKMPV-IDSVSC-IAKIASNAELSEKTKRYAIK 244
Query: 255 IGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
I + + ++P+ ++A+A+YLA ++ +TQ EI G+TEVT+R K L
Sbjct: 245 ILKKAEKQNMSAGKHPMGLAASALYLASIDLEEFRTQKEIADAAGITEVTVRNRCKGL 302
>gi|193083921|gb|ACF09599.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote KM3-34-D9]
Length = 307
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 11/180 (6%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NLR L +D + L L + + A ++R ++ RS+ L A + + R +
Sbjct: 124 NLRQALSEMDKLKDKLTLTDTVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRMTE 183
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL +I+ N+ +K++ + +I+ L L P+ V R +L L ++ +
Sbjct: 184 TPRTLDDIAEGINIKRKDVARSYRIIFRELDLKIPVADPVKGV--SRIASLAGLGEATKR 241
Query: 251 LATHIGEVVINKC----FCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
A +++NK ++P+ I+AAA+YLAC KTQ EI +G+TEVT+R
Sbjct: 242 KAL----ILLNKAKKIGMVAGKDPMGIAAAALYLACISTGGSKTQKEISIASGVTEVTIR 297
>gi|354544056|emb|CCE40778.1| hypothetical protein CPAR2_108140 [Candida parapsilosis]
Length = 353
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + L + D A ++++ LR +S E++ A++ R+A+ RT
Sbjct: 135 AYAKISQMCDGYQLPKIVQDGAKEVYKMVYDEKRLRGKSQESIMAASIFIGCRKAKVART 194
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH---------------MPRFC 239
+EI NVP+KEIGK +I+ ++ N S A + + RFC
Sbjct: 195 FKEIWALTNVPKKEIGKVFRIMNNIIREKNEANPQSAAYYSQDNIQTTQTSAEDLIRRFC 254
Query: 240 TLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 299
+ L L+ A +I + R+P +I+A IY+A + ++I TG
Sbjct: 255 SHLGLSSQVTNGAEYIARRSKDVGVLAGRSPTTIAATVIYMASLVFGVELPPSKISDKTG 314
Query: 300 LTEVTLRKVYKELLENWDDLL 320
+++ T++ YK L E D L+
Sbjct: 315 VSDGTIKTSYKYLFEEKDKLM 335
>gi|385301292|gb|EIF45494.1| transcription initiation factor iib [Dekkera bruxellensis AWRI1499]
Length = 358
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 14/192 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + L + D A ++++ LR +S E++ AA+ R+A PR+
Sbjct: 134 AYAKISQMCDGYQLPKVVQDGAKEVYKLVYDDKMLRGKSQESIMAAAIFLGCRKASVPRS 193
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH--------------MPRFCT 240
+EI NVP+KEIGK K++ + ++ + I + RFC+
Sbjct: 194 FKEIWALTNVPRKEIGKTFKVINQIIRKKNAEHGGLITYQNDNIATTQTNPEDLVGRFCS 253
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L A HI + R+P +I+A IY A L + + I + TG+
Sbjct: 254 HLGLTPQITSSARHIARKLREVGVLEGRSPTTIAATVIYFATLLFKQHISLQRISEKTGV 313
Query: 301 TEVTLRKVYKEL 312
+E T++ YK+L
Sbjct: 314 SEGTIKSSYKQL 325
>gi|340960457|gb|EGS21638.1| hypothetical protein CTHT_0035020 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 352
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 129/332 (38%), Gaps = 48/332 (14%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CGSCG V+ +R + + D +D PS N +D D Q T A
Sbjct: 50 CGSCGLVVGDRIIDTRSEWRTFSNDDQ----GNDDPSRVGDAPNLMIDGDQLQTT---IA 102
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
+ G+ A R L + +S + L+AY I +
Sbjct: 103 YG-----------------EGKNA---RNLSHLQNKVNQDKASKAL--LQAYRDIQSLTD 140
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
+ + + A +++ L+ +S EA+ + A R+ PRT +EI V
Sbjct: 141 SINTGSQVANAAKHIYKLVEDNKALKGKSQEAIIAGCIFIACRQMGVPRTFREIYGLTKV 200
Query: 205 PQKEIGKYIKILGEALQL----------------SQPINSNSIAVHMPRFCTLLQLNKSA 248
+KEIG+ K L LQ Q S S R+C+ L+ +
Sbjct: 201 SKKEIGRVFKQLEAFLQKMGGEEQVAQTSIFTAQYQAKGSTSAPELCARYCSNLRFRHAV 260
Query: 249 QV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+V +A + E R+P+S++AA IY+A L + +T EI V G+++ T++
Sbjct: 261 RVENIARRLAEKSAKVTDLAGRSPLSVAAACIYMASHLAGEPRTSKEISVVAGVSDGTVK 320
Query: 307 KVYKELLENWDDLLPSNYTP-AVPPEKAFPTT 337
Y+ L + D +L P VPP P
Sbjct: 321 TAYRYLYNSKDVILTEEVFPEGVPPTDKLPVN 352
>gi|255942455|ref|XP_002561996.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586729|emb|CAP94376.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 350
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 121/320 (37%), Gaps = 52/320 (16%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCG V+A+R+ H + + D Q ND DP
Sbjct: 43 TVCGSCGLVLADREIDLHSEWRTFSND---------------DQNND----DP------- 76
Query: 83 TAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDV 142
S +PL + S R +L + + L AY +I +
Sbjct: 77 ---SRVGDASNPLLNGAQLETSIASGGSGRARDLYRAQNKQSGEKANKALLAAYKEIGAL 133
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+ + D A LF+ A + +S E + + A R+ + PRT EI
Sbjct: 134 CDGFNIQKTVADTAKYLFKMVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVT 193
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMP----------------------RFCT 240
V +KEIG+ K L E +Q + ++ A+ RFC
Sbjct: 194 KVTRKEIGRIYKAL-EKFFTTQNVERHNAALENGETHDFAGDYNATTSTKPSDLCNRFCN 252
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
LL L ++ + + V R+P+SI AA IY+A L K+ EI +V +
Sbjct: 253 LLDLPYQVTSVSVSLSDRVTAMGDLAGRSPLSIVAACIYMASFLMGHGKSAKEISQVAHV 312
Query: 301 TEVTLRKVYKELLENWDDLL 320
++ T+R YK+L + L+
Sbjct: 313 SDGTIRGAYKQLYAERERLV 332
>gi|448321877|ref|ZP_21511352.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445602929|gb|ELY56900.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 317
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 99/185 (53%), Gaps = 6/185 (3%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + L+R +R RS+E +ATAAL R+
Sbjct: 132 NLQFALSEIDRMASALGVPQSTREVTSVLYRRALEEDLIRGRSIEGVATAALYAGCRQEG 191
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + + + E+ + + + L L +PI+ ++PRFC+ L L + +
Sbjct: 192 LPRSLEEVTEVSRIERIEVSRTYRYISSELGLEIRPIDPKQ---YVPRFCSALDLPQEVE 248
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + R P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 249 AKAKEIIDETADPLL-SGRGPSGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 307
Query: 310 KELLE 314
+E +E
Sbjct: 308 QEQIE 312
>gi|448315422|ref|ZP_21505070.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
gi|445611595|gb|ELY65342.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
Length = 319
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 100/188 (53%), Gaps = 6/188 (3%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ D+ + A ++R +R RS+E +ATAAL R
Sbjct: 133 NLQFALSEIDRMASALGVPRDVREVASVIYRRALDEDLIRGRSIEGVATAALYAGCRREG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EI+ + V + EI + + + L L PI+ ++PRF + L L + +
Sbjct: 193 IPRSLEEIADVSRVERLEISRTYRYVSNELGLELLPIDPKQ---YVPRFSSKLDLPQEVK 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V A I + + R P +AAAIY A L ++++TQ + +V +TEVT+R Y
Sbjct: 250 VKANEIIDETADPLLSG-RGPSGFAAAAIYAAALLCNEKRTQKAVAEVAQVTEVTIRNRY 308
Query: 310 KELLENWD 317
+E +E D
Sbjct: 309 QEQIELLD 316
>gi|448683556|ref|ZP_21692273.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445783695|gb|EMA34520.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 286
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 4/191 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
SS + + A+ +I + S + L I D A LF + L+ R++E A AA+
Sbjct: 99 SSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQNENLLQGRTLEGFAAAAIYA 158
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQ 243
R RT+ E+ A Q E+ L L L + PI+ ++PRF T L
Sbjct: 159 TCRTEGVARTVDELCTVAKATQAELRAAYDALNRELGLPTGPIDPRE---YVPRFATALD 215
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L + + A + + ++ + RNP ++AA +Y A Q ++ TQ E + +T V
Sbjct: 216 LPTAVRQRAERLVDEAQDRGLVSGRNPAGVAAACLYTAAQEQNVALTQVEAAETADVTPV 275
Query: 304 TLRKVYKELLE 314
TLR Y EL E
Sbjct: 276 TLRGTYTELQE 286
>gi|330926698|ref|XP_003301569.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
gi|311323527|gb|EFQ90325.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
Length = 357
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 119/322 (36%), Gaps = 62/322 (19%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCGRV+AER H + D P + + P + Q E F G
Sbjct: 57 TICGSCGRVLAERTIDTH-----QGNDDPSRIGDAANPLLHGSQLQT---EIGFGDGGM- 107
Query: 83 TAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDV 142
R +L + S V AY QI +
Sbjct: 108 -----------------------------RVRDLSRAHNKSNHDKVNKALQAAYGQITAL 138
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+ + A LF+ A + +S +A+ + A R+ + R+ +EI
Sbjct: 139 CDSQNISRPTAETAKMLFKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFREIFKMT 198
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVH------------------------MPRF 238
NV +KE+G+ K+L +Q SQ SIA + MPR
Sbjct: 199 NVSKKEVGRTFKVLEAFIQKSQNNGGPSIAGNGAVIDTVNLLNQKGGTTATSAASLMPRA 258
Query: 239 CTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT 298
C L L Q++A + V + R+P+SI+ A +YL L + K+ EI
Sbjct: 259 CAKLALGTQVQMVAEECADQVAHYGVAAGRSPLSIAGACLYLVSHLMGQPKSPKEIGLAV 318
Query: 299 GLTEVTLRKVYKELLENWDDLL 320
+++ T+R YK + D ++
Sbjct: 319 EVSDGTIRTAYKLMHTEQDKII 340
>gi|425768808|gb|EKV07320.1| Transcription initiation protein [Penicillium digitatum Pd1]
gi|425770141|gb|EKV08614.1| Transcription initiation protein [Penicillium digitatum PHI26]
Length = 350
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 121/320 (37%), Gaps = 52/320 (16%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCG V+A+R+ H + + D Q ND DP
Sbjct: 43 TVCGSCGLVLADREIDLHSEWRTFSNDD---------------QNND----DP------- 76
Query: 83 TAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDV 142
S +PL + S R +L + + L AY +I +
Sbjct: 77 ---SRVGDASNPLLNGAQLETSIASGGSGRARDLYRAQNKQSGEKANKALLAAYKEIGAL 133
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+ + D A LF+ A + +S E + + A R+ + PRT EI
Sbjct: 134 CDGFNIQKTVADTAKYLFKMVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVT 193
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMP----------------------RFCT 240
V +KEIG+ K L E +Q + ++ A+ RFC
Sbjct: 194 KVTRKEIGRIYKAL-EKFFTTQNVERHNAALENGETHDFAGDYNATTSTKPSDLCNRFCN 252
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
LL L ++ + + V R+P+SI AA IY+A L K+ EI +V +
Sbjct: 253 LLDLPYQVTSVSVSLSDRVTAMGDLAGRSPLSIVAACIYMASFLMGHGKSAKEISQVAHV 312
Query: 301 TEVTLRKVYKELLENWDDLL 320
++ T+R YK+L + L+
Sbjct: 313 SDGTIRGAYKQLYAERERLV 332
>gi|448519650|ref|XP_003868125.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis Co 90-125]
gi|380352464|emb|CCG22690.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis]
Length = 353
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 15/201 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + L + D A ++++ LR +S E++ A++ R+A+ RT
Sbjct: 135 AYAKISQMCDGYQLPKIVQDGAKEVYKMVYDEKRLRGKSQESIMAASIFIGCRKAKVART 194
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH---------------MPRFC 239
+EI NVP+KEIGK +I+ ++ N S A + + RFC
Sbjct: 195 FKEIWALTNVPKKEIGKVFRIMNNIIREKNEANPQSAAYYSQDNIQTTQTSAEDLIRRFC 254
Query: 240 TLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 299
+ L L+ A +I + R+P +I+A IY+A + ++I TG
Sbjct: 255 SHLGLSSQVTNGAEYIARRSKDVGVLAGRSPTTIAATVIYMASIVFGVELPPSKISDKTG 314
Query: 300 LTEVTLRKVYKELLENWDDLL 320
+++ T++ YK L E D L+
Sbjct: 315 VSDGTIKTSYKYLFEEKDKLM 335
>gi|407462994|ref|YP_006774311.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046616|gb|AFS81369.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 309
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 139/315 (44%), Gaps = 35/315 (11%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSD---- 58
C YC+A+ G G ++ C SCG VI+E R D TSD
Sbjct: 14 CNYCNAS-GFVTDEILGETV--CSSCGFVISENA-------EYRGTDRRFISSTSDNTRT 63
Query: 59 LPSIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLS 118
P + + G++ I V PL +++ F G+L + + S
Sbjct: 64 GPGLTLKMHDKGLNT--------IIGAQNRDSVGKPLPVKTVQIF-GRLRKWD------S 108
Query: 119 SSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEAL 177
S T S+ NLR L D V S LGL I + A +R +R R+V+++
Sbjct: 109 RSQTKNSAD---KNLRVALVEFDKVQSKLGLSDTIIERASLFYRKAIKRNLIRGRTVKSV 165
Query: 178 ATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPR 237
A A L A ++ + R+L EI+I + +KEI + +IL + L + + N I + + +
Sbjct: 166 AAACLYAACKDLEHDRSLTEIAIQFVIKRKEISRAYRILFKELGFTVNV-VNPIKL-ISK 223
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
+ L+L++ AT I V + +NP ++A+ IY AC + + K+Q ++ +
Sbjct: 224 ITSKLELSEKTIRKATQILTVAQDAGITVGKNPEILAASVIYAACVITGELKSQTQVAEA 283
Query: 298 TGLTEVTLRKVYKEL 312
+ V++R +E
Sbjct: 284 ANTSTVSIRNRIREF 298
>gi|448478864|ref|ZP_21603945.1| transcription factor TFIIB cyclin-related protein, partial
[Halorubrum arcis JCM 13916]
gi|445822816|gb|EMA72577.1| transcription factor TFIIB cyclin-related protein, partial
[Halorubrum arcis JCM 13916]
Length = 185
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 101/178 (56%), Gaps = 4/178 (2%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
+I +AS LGL ++ + A ++R S L RS+E +ATAAL A R+ PR+L E
Sbjct: 4 EIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQVGNPRSLDE 63
Query: 198 ISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
+ + V + E+ + + + L L QP + S ++PRF + L L++ + A +
Sbjct: 64 FTAVSRVEKMELTRTYRYVVRELGLRVQPADPTS---YVPRFVSRLDLSEETERRARELL 120
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
E N + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R YKELLE
Sbjct: 121 EDAANAGITSGKSPVGLAAAAVYAAALLSNEKVTQSEVSDVADVSEVTIRNRYKELLE 178
>gi|448732508|ref|ZP_21714784.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445804622|gb|EMA54863.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 342
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 21/204 (10%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L D +AS LG+ + + + ++R S +R RS+EA+A +AL A R+
Sbjct: 134 NLQFALSETDRMASALGVPRSVREVSSVIYRRALSEDLIRGRSIEAVAASALYAACRKEG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVH--------------- 234
PR+L+E++ A V QKEIG+ + + L+L +P++ +
Sbjct: 194 IPRSLEEVTHVARVEQKEIGRTYRYIARELELGMRPVDPQKYVTYRYIARELELGMRPVD 253
Query: 235 ----MPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKT 290
+PRFC+ L L++ Q A + E + + ++P +AAAIY A L +++KT
Sbjct: 254 PQKYVPRFCSSLDLSEEVQSKANEVIEASAAEGLLSGKSPTGYAAAAIYAASLLCNEKKT 313
Query: 291 QAEICKVTGLTEVTLRKVYKELLE 314
Q E+ V +TEVT+R Y+E +E
Sbjct: 314 QREVADVAQVTEVTIRNRYQEQIE 337
>gi|452208372|ref|YP_007488494.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452084472|emb|CCQ37817.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 330
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 140/320 (43%), Gaps = 30/320 (9%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSI 62
CP CS GR ++ T C CGRV+ Q + RA D+ S + +
Sbjct: 35 CPECS---GRI-VHDEAQAETHCQDCGRVLESDQIDRGPEW--RAFDSREKNDKSRVGA- 87
Query: 63 PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERT--FELLSSS 120
PQ QQ G T W R ++ L+ L+R L
Sbjct: 88 PQTQQ--------LHDRGLSTVID-W---------RDEDAYGRSLSSLQRKKMRRLRKWD 129
Query: 121 TTSTSSSVMMDNLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALAT 179
+ + NL+ L +I +AS LG I + L+R LR RSVE +AT
Sbjct: 130 ERFRTKNNRERNLKQALGEINRMASALGCPDPIRETTSVLYRQALEKDMLRGRSVEGMAT 189
Query: 180 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFC 239
AAL R PRTL +++ + V + EI + + L + L+L + ++ RF
Sbjct: 190 AALYAGSRLENAPRTLDDVAAVSRVDKIEIERTYRYLADELELE--MTPTDPEAYVARFA 247
Query: 240 TLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 299
+ L + + + + + + + RNP+ I+A+A+Y A +L ++ Q ++ ++
Sbjct: 248 SELGCSDETERRSRELIQAAVEAGVHSGRNPVGIAASALYAAAKLTNQDVIQDDLAEIAN 307
Query: 300 LTEVTLRKVYKELLENWDDL 319
+++VT+R Y E+LE D++
Sbjct: 308 VSKVTIRNRYTEILEAADEV 327
>gi|24414276|gb|AAN59779.1| Putative transcription initiation factor IIB [Oryza sativa Japonica
Group]
gi|108706635|gb|ABF94430.1| Transcription factor TFIIB repeat family protein [Oryza sativa
Japonica Group]
gi|125542744|gb|EAY88883.1| hypothetical protein OsI_10362 [Oryza sativa Indica Group]
Length = 308
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 8/195 (4%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSAT-CLRNRSVEALATAALVQAIREAQEPR 193
A+ I D+A L L I D A +LF+ A C R R+ +A A L A R PR
Sbjct: 115 AFRAISDMADRLQLVATIRDRAKELFKKMEEAKLCARVRNRDAAYAACLHIACRNEGNPR 174
Query: 194 TLQEISIAANVPQ--KEIGKYIKI----LGEALQLSQPINSNSIAVHMPRFCTLLQLNKS 247
TL+E++ Q KEIG+ +I LGE + + A +M RF + L + K
Sbjct: 175 TLKELASVMRDCQDKKEIGRMERIIRRHLGEEAGTAMEMGVVRAADYMSRFGSRLGMGKP 234
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
A + + +K RRNP SI+AA IY+ Q + + ++ K +G+ E T+++
Sbjct: 235 EVREAQRAAQTLEDK-LDVRRNPESIAAAIIYMVVQRAGAQTSARDVSKASGVAEATIKE 293
Query: 308 VYKELLENWDDLLPS 322
KEL ++ + L S
Sbjct: 294 ACKELSQHEELLFSS 308
>gi|52550004|gb|AAU83853.1| transcription initiation factor IIB [uncultured archaeon GZfos34G5]
Length = 306
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 108/215 (50%), Gaps = 10/215 (4%)
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN 171
RT L S S+ ++ A ++I +A LGL +I + L+R ++
Sbjct: 89 RTRRLRGISIDSSDKTLAF----ALVEIDRMACALGLPNNIKEATSVLYRKAMKRGLIKG 144
Query: 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK-YIKILGEALQLSQPINSNS 230
RS+E L +A L R+ PRTL+E++ + P K+I + YI +L +L +
Sbjct: 145 RSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKKIRRAYIFLL---RRLEIKLAPAD 201
Query: 231 IAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKT 290
A ++PRFC+ L L+ + A I + PI +AAAIY+A L + +T
Sbjct: 202 PARYIPRFCSKLGLSAEIREKAMVILQDDDGTGMAKGWGPIGTAAAAIYIATVLSGEYRT 261
Query: 291 QAEICKVTGLTEVTLRKVYKELLE--NWDDLLPSN 323
+ EI KV G TE+T+R YKEL++ N D L PS
Sbjct: 262 EKEIAKVAGTTEITIRDRYKELVKRLNIDVLSPSG 296
>gi|448436023|ref|ZP_21587039.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445683183|gb|ELZ35586.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 384
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 5/190 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R S L RS+E +ATAAL A R+
Sbjct: 196 NLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQVG 255
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E + + V + E+ + + + L L QP + S ++PRF + L L+ +
Sbjct: 256 NPRSLDEFTAVSRVEKMELTRTYRYVVRELGLRVQPADPTS---YVPRFVSRLDLSDETE 312
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + + ++P+ ++AAA+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 313 RRARELLDDAASAGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSDVADVSEVTIRNRY 372
Query: 310 KELLENWDDL 319
KELLE D+
Sbjct: 373 KELLEASGDV 382
>gi|167045079|gb|ABZ09742.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8I13]
Length = 304
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 138/332 (41%), Gaps = 57/332 (17%)
Query: 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQ----------CQNHHLFHIRAQDTP 51
KCP C A+G+ T + T C CG V+ E+ Q+ H RA P
Sbjct: 11 KCPRC--AKGKLVTDNES-GETFCSKCGFVLTEKLQEAGPEWRSFTQDEHGDRARA-GAP 66
Query: 52 LCLVTSD--LPSIPQPQQNDGVDEDPFQPT--GFITAFSAW---SLVPSPLFLRSSHSFS 104
L D L +I P D P T I W S V P+ +F
Sbjct: 67 TSLTMHDMGLATIINPANKDASGR-PLTSTMKSTIERLRTWDSRSQVHEPV----DRNFR 121
Query: 105 GQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCC 164
+EL R L+ L I D + + A ++R
Sbjct: 122 QAFSELNR--------------------LKDKLSISDA---------VIEKAAYIYRKAL 152
Query: 165 SATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQ 224
+R RS+ AL +AL A R+ PR L+++ AAN+ +K+I + ++L + L L
Sbjct: 153 DKGLVRGRSISALMASALYAACRDTSTPRNLKDVEQAANIKRKDIARCYRLLVKELDLHM 212
Query: 225 PINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQL 284
P+ + V R + + + + + AT + + ++P+ ++AAA+YLAC
Sbjct: 213 PVTDSVQCV--ARIASKIGIQEKTKRFATKVLKRAQENEVSAGKDPMGLAAAALYLACVK 270
Query: 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLENW 316
+ KTQ +I + +TEVT+R YK L +++
Sbjct: 271 NGEDKTQRDIAEAANVTEVTIRNRYKGLKDSF 302
>gi|353237099|emb|CCA69080.1| related to RRS1-regulator of ribosome biogenesis [Piriformospora
indica DSM 11827]
Length = 668
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 109/272 (40%), Gaps = 50/272 (18%)
Query: 97 LRSSHSF----SGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDI 152
L +S SF SG EL+R LS+ + S +V+ + QI + L +
Sbjct: 372 LSTSISFRDGNSGHSRELQRAAARLSNDKSQRSLTVVFE------QIQSMCDQYSLPRSV 425
Query: 153 CDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKY 212
D A L+R LR + +A+ A L A R+A PRT +EI NVP+K+IG+
Sbjct: 426 SDTAKMLYRRTEEEKLLRGKQPDAIVAACLFIACRQAAVPRTFKEIVELTNVPKKQIGQC 485
Query: 213 IKILGEALQLS---------------------------------QPI-------NSNSIA 232
K L A L+ P+ NS S
Sbjct: 486 YKALERAFNLAPGATAANPSGHSSGGAGDGNVGTSGPSGAQKGDAPLPGGAGSTNSTSPE 545
Query: 233 VHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQA 292
M R+C L L + Q + ++ + R+P+SI++ IY L +
Sbjct: 546 DLMARYCNYLDLPPALQAYCADVSGRARSRDIASGRSPVSIASGIIYFTAMLFGYSVSLK 605
Query: 293 EICKVTGLTEVTLRKVYKELLENWDDLLPSNY 324
EI G++E T++ VY+ L + + L+ +
Sbjct: 606 EIGATAGVSEGTIKLVYRLLWADREALVNEKW 637
>gi|448424048|ref|ZP_21582174.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445682713|gb|ELZ35126.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 178
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+AS LGL ++ + A ++R S L RS+E +ATAAL A R+ PR+L E +
Sbjct: 1 MASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQVGNPRSLDEFTAV 60
Query: 202 ANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVI 260
+ V + E+ + + + L L QP + S ++PRF + L L++ + A + E
Sbjct: 61 SRVEKMELTRTYRYVVRELGLRVQPADPTS---YVPRFVSRLDLSEETERRARELLEDAA 117
Query: 261 NKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
N + ++P+ ++AAA+Y A L +++ TQ+E+ V ++EVT+R YKELLE
Sbjct: 118 NAGITSGKSPVGLAAAAVYAAALLSNEKVTQSEVSDVADVSEVTIRNRYKELLE 171
>gi|82617153|emb|CAI64060.1| probable transcription initiation factor IIB [uncultured archaeon]
gi|82617265|emb|CAI64171.1| probable transcription initiation factor IIB [uncultured archaeon]
Length = 306
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 108/215 (50%), Gaps = 10/215 (4%)
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN 171
RT L S S+ ++ A ++I +A LGL +I + L+R ++
Sbjct: 89 RTRRLRGISIDSSDKTLAF----ALVEIDRMACALGLPNNIKEATSVLYRKAMKRGLIKG 144
Query: 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK-YIKILGEALQLSQPINSNS 230
RS+E L +A L R+ PRTL+E++ + P K+I + YI +L +L +
Sbjct: 145 RSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKKIRRAYIFLL---RRLEIKLAPAD 201
Query: 231 IAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKT 290
A ++PRFC+ L L+ + A I + PI +AAAIY+A L + +T
Sbjct: 202 PARYIPRFCSKLGLSAEIREKAMVILQDDDGTGMAKGWGPIGTAAAAIYIATVLSGEYRT 261
Query: 291 QAEICKVTGLTEVTLRKVYKELLE--NWDDLLPSN 323
+ EI KV G TE+T+R YKEL++ N D L PS
Sbjct: 262 EKEIAKVAGTTEITIRDRYKELVKRLNIDVLSPSR 296
>gi|448323082|ref|ZP_21512547.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445600711|gb|ELY54717.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 319
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 130 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKED 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++ +
Sbjct: 190 IPRSLEEVTAVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVDTHVE 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L ++ Q + T VT+R Y
Sbjct: 247 SKAIEIIDETTTQGLHSGKSPTGFAAAAIYAAGLLCEETIPQRAVADTAQTTVVTVRNRY 306
Query: 310 KELLENWD 317
+E LE D
Sbjct: 307 REQLEAID 314
>gi|268322998|emb|CBH36586.1| probable transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 108/215 (50%), Gaps = 10/215 (4%)
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN 171
RT L S S+ ++ A ++I +A LGL +I + L+R ++
Sbjct: 85 RTRRLRGISIDSSDKTLAF----ALVEIDRMACALGLPNNIKEATSVLYRKAMKRGLIKG 140
Query: 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK-YIKILGEALQLSQPINSNS 230
RS+E L +A L R+ PRTL+E++ + P K+I + YI +L +L +
Sbjct: 141 RSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKKIRRAYIFLL---RRLEIKLAPAD 197
Query: 231 IAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKT 290
A ++PRFC+ L L+ + A I + PI +AAAIY+A L + +T
Sbjct: 198 PARYIPRFCSKLGLSAEIREKAMVILQDDDGTGMAKGWGPIGTAAAAIYIATVLSGEYRT 257
Query: 291 QAEICKVTGLTEVTLRKVYKELLE--NWDDLLPSN 323
+ EI KV G TE+T+R YKEL++ N D L PS
Sbjct: 258 EKEIAKVAGTTEITIRDRYKELVKRLNIDVLSPSR 292
>gi|222479934|ref|YP_002566171.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452836|gb|ACM57101.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R S L RS+E +ATAAL A R+A
Sbjct: 145 NLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQAG 204
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L+L QP + S ++PRF + L L++ Q
Sbjct: 205 NPRSLDEISAVSRVDKMELTRTYRYVIRELKLEIQPADPGS---YVPRFVSRLGLSEETQ 261
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + + + ++P+ ++A+A+Y A L +++ TQ+++ +V ++EVT+R Y
Sbjct: 262 RVARELLDSAKRAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSEVADISEVTIRNRY 321
Query: 310 KELLE 314
KELL+
Sbjct: 322 KELLD 326
>gi|268326216|emb|CBH39804.1| transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
+I +A L L D+ + L+R + ++ RS+E LA+A L R+ PRTL+E
Sbjct: 105 EIDRMACALNLPRDLRETTSLLYRKAAKRSLIKGRSIEELASAMLYITCRQYGIPRTLKE 164
Query: 198 ISIAANVPQKEIGK-YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHI- 255
I+ + +P K+I + YI +L +L + A ++PRFC+ L L + A I
Sbjct: 165 IAAVSRMPLKKIRRAYIFLLH---KLEIKLAPADPACYIPRFCSELGLRDVIRERAIEIV 221
Query: 256 ---GEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
E + K + P +AAAIYLA L + ++ KV G T VT++ YKEL
Sbjct: 222 SEDKETIAAKGW----TPTGTAAAAIYLASLLSGESVEVKDMAKVAGTTPVTIQNRYKEL 277
>gi|340715880|ref|XP_003396435.1| PREDICTED: transcription initiation factor IIB-like [Bombus
terrestris]
Length = 120
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 235 MPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 294
M RFC+ L L Q ATHI + R+PIS++AAAIY+A Q + +++Q EI
Sbjct: 19 MSRFCSNLGLPNMVQRAATHIARKAVEIDIVPGRSPISVAAAAIYMASQASEDKRSQKEI 78
Query: 295 CKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+ G+ +VT+R+ YK + + L P ++ A P ++
Sbjct: 79 GDIAGVADVTIRQSYKLMYPHAGKLFPEDFRFATPIDQ 116
>gi|389625125|ref|XP_003710216.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|351649745|gb|EHA57604.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|440464829|gb|ELQ34194.1| transcription initiation factor IIB [Magnaporthe oryzae Y34]
gi|440490541|gb|ELQ70086.1| transcription initiation factor IIB [Magnaporthe oryzae P131]
Length = 371
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
+I D+ + ++ A LFR+ A L+ +S +A + A R + PRT +E
Sbjct: 132 KIKDLVDKIHGGGNVIKQAQSLFREVEEAKALKGKSADAAVAGCIFIACRMEKVPRTFRE 191
Query: 198 ISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAV---HMP------------------ 236
I NV +KEIG+ K L E ++ N A MP
Sbjct: 192 IHALTNVSKKEIGRTYKALEEYVKKVNYENRGGAAAVDHKMPTADDDDDDMATKGTTAES 251
Query: 237 ---RFCTLLQLNKS--AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ 291
R+C++L S A+ +A H+ + R+P+S++AA IY+ L + +T
Sbjct: 252 LCTRYCSILGFRVSHLAERVAMHLARKSSSVADLAGRSPLSVAAACIYMMSHLIGEPRTS 311
Query: 292 AEICKVTGLTEVTLRKVYKELLENWDDL 319
+I V G+++ T++ YK LL D+L
Sbjct: 312 KDIAVVAGVSDGTIKTAYKFLLAAKDEL 339
>gi|212526306|ref|XP_002143310.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
gi|210072708|gb|EEA26795.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
Length = 341
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 127/330 (38%), Gaps = 45/330 (13%)
Query: 19 GRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQP 78
G T CGSCG V+A+R+ H + + D Q ND DP +
Sbjct: 37 GSHETVCGSCGLVLADREIDIHSEWRTFSND---------------DQNND----DPSR- 76
Query: 79 TGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ 138
+ S L + L + +G +L R LSS + + + AY +
Sbjct: 77 ---VGETSNILLNGNQLETSIAGGATGAARQLYRAQNKLSSEKNNKAL------MAAYKE 127
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I + + + D A LF+ + +S + + + A R+ Q PRT EI
Sbjct: 128 IGALCDGFNIQKIVADTAKYLFKIVDDHKAFKGKSQDVIIAGCIFIACRQCQAPRTFSEI 187
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH---------------MPRFCTLLQ 243
V +KEIG+ K L E +Q I ++ RF + L
Sbjct: 188 FAVTKVSRKEIGRIYKSL-EKFFTAQNIERTAVVGADAGFKQTTSTKPSDLCERFGSFLG 246
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L+ A + + V R+P+SI AA +Y+ L K+ EI V G+++
Sbjct: 247 LDYRTWHSAADLSDRVTKDGDLAGRSPLSIVAACLYMVSHLCGVPKSAKEISAVVGVSDG 306
Query: 304 TLRKVYKELLENWDDLLPSNYTPAVPPEKA 333
T+R YK+L D L+ + ++A
Sbjct: 307 TIRGAYKQLYAERDRLIDDEFIAKSNGDRA 336
>gi|448726015|ref|ZP_21708442.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
gi|445797034|gb|EMA47518.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
Length = 334
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 100/184 (54%), Gaps = 3/184 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I +AS LG+ D+ + A ++R S L RS+E ++TAAL IR+
Sbjct: 138 NLKQALGEIERMASALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMG 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+++E+ + V + E + + + + L L I + ++ RF + L +++ +
Sbjct: 198 LPRSVEEVGAVSRVDEMEFKRAYRYINQELDLE--IGPPNPKQYVSRFASDLDVSEETER 255
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + E + + ++P+ ++ AA+Y A L +++ TQ E+ +V ++ VT+R Y
Sbjct: 256 RARDLLETAERQAVHSGKSPVGLAGAALYAAGILTNRKLTQDEVSEVAEVSNVTIRNRYH 315
Query: 311 ELLE 314
EL+E
Sbjct: 316 ELME 319
>gi|255721725|ref|XP_002545797.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240136286|gb|EER35839.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 347
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 27/207 (13%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I ++ + L + D A L++ L+ +S +A+ + ++ R A+ PRT
Sbjct: 129 AYQRISELCNGYQLPKSVSDAAKHLYKAVRDDRLLKGKSQDAIMASTILLGCRRAEVPRT 188
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----------------MPRF 238
L+EI NVP K+I K +++ + + +NS+ A + RF
Sbjct: 189 LEEIRALTNVPTKQIAKITRLIKKIIH--SHLNSDDAAAAIVDETTNLTTHSAEDLIRRF 246
Query: 239 CTLLQLNKSAQVLATHIGEVVINKC----FCTRRNPISISAAAIYLACQ-LEDKRKTQAE 293
C+ L LN + T+ E + KC R+P +I+A +IYLA + L D + TQ +
Sbjct: 247 CSHLGLNP----IITNGSEYIARKCNELGILAGRSPTTIAATSIYLAAKVLGDTKLTQQQ 302
Query: 294 ICKVTGLTEVTLRKVYKELLENWDDLL 320
I TG++ T++ YK L E +L+
Sbjct: 303 IRDKTGVSIGTIKNSYKILYEKARELV 329
>gi|408405841|ref|YP_006863824.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408366437|gb|AFU60167.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 297
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 132/313 (42%), Gaps = 30/313 (9%)
Query: 3 CPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSI 62
CP C Q + +G I C CG VI ER + + A++ L TS
Sbjct: 10 CPNCGDGQ-KVTDVESGELI--CTKCGFVIRERVGNEEEDWSVLAREPGSKLRTS----- 61
Query: 63 PQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSF-SGQLAELERTFELLSSST 121
PT A S L S + R S SG A + TF+ L +
Sbjct: 62 ---------------PTSL--ARSGMGL--STIIGRPDMSAGSGLNAAMRSTFDRLRAWD 102
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
RA++++ + S LGL I + ++R +R R++ A+ AA
Sbjct: 103 FRIKGQDERSLRRAFVELDRLRSALGLSDAIVEKTAYIYRRAQERGLVRGRTMRAVLGAA 162
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTL 241
+ RE TLQ+I A N +K++ + +IL L L P+ + V R +
Sbjct: 163 IYIVQREMGVSGTLQDIINATNTTEKDLARAYRILLRELDLKVPMLDPAKCVS--RVASK 220
Query: 242 LQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 301
+++ + A + VI ++P+ ++A+ +Y+AC + K+QA I G++
Sbjct: 221 ANISERTKRKAMDMIYNVIKSGLAAGKDPMGLAASVLYIACTSSGEPKSQAAIADAAGVS 280
Query: 302 EVTLRKVYKELLE 314
EVTLRK + ++E
Sbjct: 281 EVTLRKNQRMIIE 293
>gi|110669504|ref|YP_659315.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627251|emb|CAJ53741.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 314
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 88/209 (42%), Gaps = 7/209 (3%)
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
Q A L R ST + V A+ +I + L L I D A LFR S
Sbjct: 106 QFARLRRQHNRARISTKRERNQVY-----AFTEIRRLTGALSLPKQIRDDACSLFRSAQS 160
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQP 225
LR RS+E A A + A R A RT++EI+ A E L L L P
Sbjct: 161 EDLLRGRSLEGFAAACVYAACRVAGVARTIEEITDIAKATSAEQRAAYTALNRELGL--P 218
Query: 226 INSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLE 285
I A ++PRF + L+L + + A ++ + RNP ++AA +Y A +
Sbjct: 219 IGPIDPAQYLPRFASELELPSNIERRACEYISMITAQGIGAGRNPSGVAAACLYTAARDI 278
Query: 286 DKRKTQAEICKVTGLTEVTLRKVYKELLE 314
TQ + +T VTLR Y +L E
Sbjct: 279 GFELTQQTAADIADVTPVTLRATYHDLRE 307
>gi|448439566|ref|ZP_21588130.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
gi|445691100|gb|ELZ43295.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
Length = 333
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R S L RS+E +ATAAL A R+A
Sbjct: 145 NLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQAG 204
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E + + V + E+ + + + L+L QP + S ++PRF + L L++ Q
Sbjct: 205 NPRSLDEFTAVSRVDKMELTRTYRYVIRELKLEIQPADPES---YVPRFVSRLDLSEETQ 261
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
LA + + + ++P+ ++A+A+Y A L +++ TQ+++ +V ++EVT+R Y
Sbjct: 262 RLARELLDGAKESGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSEVADISEVTIRNRY 321
Query: 310 KELLE 314
KELL+
Sbjct: 322 KELLD 326
>gi|448736840|ref|ZP_21718923.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445805608|gb|EMA55811.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 210
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 3/184 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I +AS LG+ + + A ++R L RSVE +A+AAL A R+A
Sbjct: 20 NLKHALGEISRMASALGVPESVRETAGVIYRRALEENLLPGRSVEGVASAALYAATRQAS 79
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+L EI + V I + + + L L+ P + + ++PRF + L + +
Sbjct: 80 IPRSLDEIGNVSRVETVAIMRTYRYVSRELNLTIPPSDPTD--YVPRFASKLGAPEEVER 137
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I E I+ + + ++P+ ++AAA+Y + + TQ EI + +++VT+R Y+
Sbjct: 138 AARDILEEAIDAGYPSGKSPVGLAAAALYAGSLITNNNLTQKEIGEAANISKVTIRNRYR 197
Query: 311 ELLE 314
+LLE
Sbjct: 198 DLLE 201
>gi|448528868|ref|ZP_21620248.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710316|gb|ELZ62135.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 354
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 105/190 (55%), Gaps = 5/190 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R S L RS+E +ATAAL A R+
Sbjct: 166 NLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQVG 225
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E + + V + E+ + + + L L QP + S ++PRF + L L+ +
Sbjct: 226 NPRSLDEFTAVSRVEKMELTRTYRYVVRELGLRVQPADPTS---YVPRFVSRLDLSDETE 282
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAA+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 283 RRARELLADAASAGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSDVADVSEVTIRNRY 342
Query: 310 KELLENWDDL 319
KELLE D+
Sbjct: 343 KELLEASGDV 352
>gi|171185160|ref|YP_001794079.1| transcription initiation factor IIB [Pyrobaculum neutrophilum
V24Sta]
gi|226703639|sp|B1YCX0.1|TF2B_THENV RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|170934372|gb|ACB39633.1| Transcription factor TFIIB cyclin-related [Pyrobaculum neutrophilum
V24Sta]
Length = 333
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 6/213 (2%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ----IIDVASILGLDYDICDHAFQL 159
SG+ +++R E++ T + V R ++Q + + S +G+ + A ++
Sbjct: 112 SGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSSMGIPRPCIEQALEI 171
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R +R RSVEA+A AAL A R + PR L E+ ++E+ + ++L
Sbjct: 172 YRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLRE 231
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L + PI+ ++ ++ R L+L+ A I + ++P ++AAA+Y
Sbjct: 232 LNVKVPISDPTL--YISRIAEQLKLSGEVVKTAIDILQKAKKAGITAGKDPAGLAAAAVY 289
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+A + +TQ + G+TEVT+R YKEL
Sbjct: 290 IASLMHGDNRTQKDFAVAAGVTEVTVRNRYKEL 322
>gi|448492014|ref|ZP_21608682.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445692232|gb|ELZ44413.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 208
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R S L RS+E +ATAAL A R+
Sbjct: 20 NLKQALGEIDRMASALGLPDNVRETASVIYRRALSEDLLPGRSIEGVATAALYAAARQVG 79
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E + + V + E+ + + + L L QP + S ++PRF + L L++ +
Sbjct: 80 NPRSLDEFTAVSRVEKMELTRTYRYVVRELGLRVQPADPTS---YVPRFVSRLDLSEETE 136
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + N + ++P+ ++AAA+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 137 RRARELLDDAANAGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSDVADVSEVTIRNRY 196
Query: 310 KELLE 314
KELLE
Sbjct: 197 KELLE 201
>gi|342319859|gb|EGU11804.1| Transcription initiation factor IIB [Rhodotorula glutinis ATCC
204091]
Length = 417
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 3/232 (1%)
Query: 102 SFSGQLAELERTFELLSSSTTSTSSSVMMDNLR-AYLQIIDVASILGLDYDICDHAFQLF 160
SF + R ++ +S + +L+ A+ +I + + L I D + LF
Sbjct: 156 SFKDNNTGVARALQMAASRVAKDAQGGSGRDLQGAFREIATMCEAISLPKAIIDTSKMLF 215
Query: 161 RDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEAL 220
+ LR +S A+ A + A R+ + PRT +EI NV +KEI K + +
Sbjct: 216 KRVDEEKALRGKSEAAIIAACIFIACRQGRVPRTFKEIVALTNVSKKEIAGAFKQIDKLF 275
Query: 221 QLSQPINSNSIAVH--MPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAI 278
S P ++S + + R C L L Q + G+ ++ RNPI+I+++ I
Sbjct: 276 DTSSPHGASSTDLDSLISRICNHLALPVPLQRACSLCGQKTVDDGVLAGRNPITIASSCI 335
Query: 279 YLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPP 330
L +R EI KV G+ + T+R Y+ LL + L+ S + A P
Sbjct: 336 LFVSTLWGRRVDPKEIAKVGGVQDSTIRTGYRLLLTVKERLVDSRWFDASRP 387
>gi|385804962|ref|YP_005841362.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730454|emb|CCC41793.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 314
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 87/209 (41%), Gaps = 7/209 (3%)
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
Q A L R ST + V A+ +I + L L I D A LFR S
Sbjct: 106 QFARLRRQHNRARISTKRERNQVY-----AFTEIRRLTGALSLPKQIRDDACSLFRSAQS 160
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQP 225
LR RS+E A A + A R A RT++EI+ A E L L L P
Sbjct: 161 EDLLRGRSLEGFAAACVYAACRVAGVARTIEEITDIAKATSAEQRAAYTALNRELGL--P 218
Query: 226 INSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLE 285
I A ++PRF + L+L + A ++ + RNP ++AA +Y A +
Sbjct: 219 IGPIDPAQYLPRFASELELPSDIERRACEYISMITAQGIGAGRNPSGVAAACLYTAARDI 278
Query: 286 DKRKTQAEICKVTGLTEVTLRKVYKELLE 314
TQ + +T VTLR Y +L E
Sbjct: 279 GFELTQQTAADIADVTPVTLRATYHDLRE 307
>gi|292654406|ref|YP_003534303.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|433424039|ref|ZP_20406390.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|448293951|ref|ZP_21484053.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448573512|ref|ZP_21640995.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|291370888|gb|ADE03115.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|432198180|gb|ELK54492.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|445569344|gb|ELY23918.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445718418|gb|ELZ70108.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 288
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 87/209 (41%), Gaps = 7/209 (3%)
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
Q A + R ST + V A+ +I V S L L I D A LF +
Sbjct: 87 QFARMRRQHNRARISTKRERNQVY-----AFTEIRRVTSALSLPNHIRDQACSLFESAQN 141
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQP 225
LR RS+E A A + A R A R+++E+ + + E L L L P
Sbjct: 142 EDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKATEAEHQAAYGALNRDLGL--P 199
Query: 226 INSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLE 285
+ ++PRF T L L+ + A ++ +NP ++AA +Y A
Sbjct: 200 VAPADPTEYLPRFATKLDLDSDTERRAREYVAEARDEGLVGGKNPCGVAAACLYTAASDR 259
Query: 286 DKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ TQAE V +T VTLRK Y L E
Sbjct: 260 GEDCTQAEAADVADVTPVTLRKTYVALRE 288
>gi|448737841|ref|ZP_21719874.1| transcription initiation factor IIB [Halococcus thailandensis JCM
13552]
gi|445802803|gb|EMA53104.1| transcription initiation factor IIB [Halococcus thailandensis JCM
13552]
Length = 271
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 81/194 (41%), Gaps = 4/194 (2%)
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
T SS + + + ++ + LGL I D A LF + LR RS+E A AA
Sbjct: 81 TRISSRAERNRVYGFTEVRRMVGALGLPDSIRDRACVLFESAQNEDLLRGRSLEGFAAAA 140
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCT 240
+ R RTL EI A + E+ L L L + PI+ ++ RF
Sbjct: 141 VYAVCRTEALSRTLAEIGTVAKATRDELTAAYDALNRELGLPTGPIDPEE---YLARFAN 197
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L + A + E + RNP ++AA +Y A D TQ V G+
Sbjct: 198 QLDLPNEIERRARALVEKSHDLGLTNGRNPSGVAAACLYTAATERDHALTQQSAADVAGV 257
Query: 301 TEVTLRKVYKELLE 314
T VTLR Y +L E
Sbjct: 258 TPVTLRTTYYDLRE 271
>gi|328771004|gb|EGF81045.1| hypothetical protein BATDEDRAFT_35027 [Batrachochytrium
dendrobatidis JAM81]
Length = 335
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 6/187 (3%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L+A+ I + + L + D A QLF+ L+++ EA+ A L A RE
Sbjct: 136 LQAFKVIQAMGERISLSKIVIDSAKQLFKKADDERLLKSKPTEAIIAACLYIACREHSVT 195
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQ--LSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
RT +EI + V +KEIG+ K ALQ + P+ S+ ++ RF + + + +
Sbjct: 196 RTFREICALSKVSKKEIGRCYK----ALQPNMEHPVQQISLDAYISRFSSSIDIKADVRK 251
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
+ + ++ ++PI++ A+ +Y L K I +V G TE TL+ YK
Sbjct: 252 ATVLVADRIVELGTLAGKSPITLVASCLYFVSCLSTDPKPAKLIAEVAGCTESTLKNAYK 311
Query: 311 ELLENWD 317
LLE D
Sbjct: 312 LLLEVKD 318
>gi|348673371|gb|EGZ13190.1| hypothetical protein PHYSODRAFT_361176 [Phytophthora sojae]
Length = 308
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 3/180 (1%)
Query: 134 RAYLQIIDVASILGLDYDICDHAFQLFRDC-CSATCLRNRSVEALATAALVQAIREAQEP 192
R +I +VA L L +I + A ++ + +R E++A A L A R+A
Sbjct: 117 RNMARIQEVADYLSLPKNIVEIALDVYAEAEKQGVNMRGPERESMAVAVLFIACRKAGNA 176
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
R+L+E A+ VP++ IGK L L L + S ++ RFC+ L L Q++A
Sbjct: 177 RSLKEFEEASGVPKRRIGKSFMSLQRRLDLE--VKQASTEEYVQRFCSRLGLPNKTQMIA 234
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ + + + P++++A+ IYL + +++ EI VT + E +++KV KEL
Sbjct: 235 HAVAKKADSLELSNGQPPVAVAASVIYLVAAYTNSKRSIQEISDVTMIGEKSVKKVCKEL 294
>gi|322371186|ref|ZP_08045738.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549176|gb|EFW90838.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 357
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 7/195 (3%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R + L RS+E +ATA+L A R++
Sbjct: 157 NLKQALGEIDRMASALGLPKNVRETASVIYRRALNEDLLPGRSIEGVATASLYAAARQSG 216
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PRT+ E++ + + E + + + L L +P + ++ RF + L L +
Sbjct: 217 VPRTMDEVTTVSRIDGMEFKRTYRYIVRELGLGVKPADPEQ---YLSRFESELDLTHETK 273
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + + + ++P+ ++AAA+Y A LED++ TQ E+ V+ ++ VT+R Y
Sbjct: 274 RRAHDLLKTAKGTGITSGKSPVGLAAAALYAAALLEDEKLTQDEVSDVSDVSTVTIRNRY 333
Query: 310 KELLENWD--DLLPS 322
ELL D D LP+
Sbjct: 334 HELLTAADETDALPT 348
>gi|408402853|ref|YP_006860836.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363449|gb|AFU57179.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 292
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 98/201 (48%), Gaps = 6/201 (2%)
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN 171
RT++ S + + T ++M A+ ++ + LGL I + L+R +R
Sbjct: 91 RTWDFRSQAHSPTKRNLM----HAFSELGRLKDKLGLSDAIMEKTAYLYRKAHEKHLVRG 146
Query: 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI 231
RS ++ AA+ + RE RTL++++ A ++ +K I + +IL L + P+
Sbjct: 147 RSTSSILAAAIYASCRELGASRTLKDVAKATDIKRKAISRSYRILVLELDIKVPLADPMK 206
Query: 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ 291
+ + +L + + +A +I K + P+ ++A +Y++C + KTQ
Sbjct: 207 CI--AKIANSAKLTEKTKRMAMDTMNDLIGKEISAGKLPMGLAATVLYMSCLANGESKTQ 264
Query: 292 AEICKVTGLTEVTLRKVYKEL 312
+I + G+TEVT+R +K+L
Sbjct: 265 KDIADMAGVTEVTIRNRFKDL 285
>gi|398404368|ref|XP_003853650.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
gi|339473533|gb|EGP88626.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
Length = 361
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 22/210 (10%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L+AY QI + L Y + + A +++D + + +S EAL + A R P
Sbjct: 134 LQAYKQIGALCDGWALPYTVSESAKHIYKDADESRLFKGKSQEALIAGCVFIACRRNNVP 193
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEAL-------QLSQPINSNSIAVHMP--------- 236
RT +E +V +KEIG+ K+L L +N V+
Sbjct: 194 RTFREAMELTSVSKKEIGRTFKLLENFLMNKDKGKNAGSDAAANGAVVYNEAYKGSATAD 253
Query: 237 ------RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKT 290
RFC++L L++ A +A + + R+P+S +AA IY+A L K
Sbjct: 254 PADLCQRFCSMLGLDQRATNVAIALATAMTKSGALAGRSPLSSAAACIYMASYLMGNPKH 313
Query: 291 QAEICKVTGLTEVTLRKVYKELLENWDDLL 320
EI V ++E T+R YK L + + L+
Sbjct: 314 PKEIQSVAKVSESTIRHAYKLLYVDRNKLI 343
>gi|159466284|ref|XP_001691339.1| hypothetical protein CHLREDRAFT_115221 [Chlamydomonas reinhardtii]
gi|158279311|gb|EDP05072.1| predicted protein [Chlamydomonas reinhardtii]
Length = 312
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 103/196 (52%), Gaps = 9/196 (4%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ ++ + +LG+ + D A +++++ A L+ RSV+ALA + L A R+ ++PRT
Sbjct: 104 AFKEVGRMCDLLGVRGAVKDRACEIYKEVVEAKSLKGRSVKALAASCLFWACRQEKQPRT 163
Query: 195 LQEI--SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT-LLQLNKSAQVL 251
+EI + +V +KEIG+ K L + L+ + + A + C L+++ + L
Sbjct: 164 FKEIVSCLGNDVSKKEIGRTFKDL-QQLKKDELHRQGAAADALASSCNQTLRMDFKWRRL 222
Query: 252 ATHIGEVVI---NKCFCTRRNPISISAAAIYLACQLEDKRKTQA--EICKVTGLTEVTLR 306
A I + R P S+++A + +A L + R +A ++ V+ + E T+R
Sbjct: 223 AEDIATAAKPADRRMPWDGRTPTSVASAVVLIAMALAEARFDEALSKVAVVSSVAEGTIR 282
Query: 307 KVYKELLENWDDLLPS 322
VYK+L + +L+P+
Sbjct: 283 GVYKDLFPHLRELVPT 298
>gi|435849538|ref|YP_007311726.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433675746|gb|AGB39936.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 318
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 6/185 (3%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + ++R +R RS+E +ATAAL R+
Sbjct: 133 NLQFALSEIDRMASALGVPRAVREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EI+ + + + EI + + + L L +PI+ ++PRF + L+L + +
Sbjct: 193 IPRSLEEITEVSRIERIEISRTYRYISNELGLELRPIDPKQ---YVPRFTSKLELPQEVE 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + R P +AAAIY A L ++++TQ E+ V +TEVT+R Y
Sbjct: 250 TKANEIIDETADPLLSG-RGPSGFAAAAIYAAALLCNEKRTQREVADVAQVTEVTIRNRY 308
Query: 310 KELLE 314
+E +E
Sbjct: 309 QEQIE 313
>gi|448606561|ref|ZP_21658987.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738769|gb|ELZ90281.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 288
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 89/209 (42%), Gaps = 7/209 (3%)
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
QLA + R ST + V A+ +I V S L L I D A LF +
Sbjct: 87 QLARMRRQHNRARISTKRERNQVY-----AFTEIRRVTSALSLPNHIRDQACSLFESAQN 141
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQP 225
LR RS+E A A + A R A R+++E+ + + E L L L P
Sbjct: 142 EDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKSTEAEHQAAYGALNRDLGL--P 199
Query: 226 INSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLE 285
+ ++PRF T L L+ + A ++ +NP ++AA +Y A
Sbjct: 200 VAPADPTEYLPRFATKLDLDSDTERRAREYVADARDEGLVGGKNPCGVAAACLYTAACDR 259
Query: 286 DKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ TQAE +V +T VTLRK Y L E
Sbjct: 260 GEDCTQAEAAEVADVTPVTLRKTYVALRE 288
>gi|448543870|ref|ZP_21625331.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448551030|ref|ZP_21629172.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448558595|ref|ZP_21633152.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445706012|gb|ELZ57899.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710586|gb|ELZ62384.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445712347|gb|ELZ64129.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 288
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 87/209 (41%), Gaps = 7/209 (3%)
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
Q A + R ST + V A+ +I V S L L I D A LF +
Sbjct: 87 QFARMRRQHNRARISTKRERNQVY-----AFTEIRRVTSALSLPNHIRDQACSLFESAQN 141
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQP 225
LR RS+E A A + A R A R+++E+ + + E L L L P
Sbjct: 142 EDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKATEAEHQAAYGALNRDLGL--P 199
Query: 226 INSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLE 285
+ ++PRF T L L+ + A ++ +NP ++AA +Y A
Sbjct: 200 VAPADPTEYLPRFATKLDLDSDTERRAREYVAEARDEGVVGGKNPCGVAAACLYTAASDR 259
Query: 286 DKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ TQAE V +T VTLRK Y L E
Sbjct: 260 GEDCTQAEAADVADVTPVTLRKTYVALRE 288
>gi|448349399|ref|ZP_21538241.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445640642|gb|ELY93729.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 318
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 97/185 (52%), Gaps = 6/185 (3%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + ++R +R RS+E +ATAAL R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQED 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EI+ + + + E+ + + + L L PI+ ++PRF + L L + +
Sbjct: 193 IPRSLEEITEVSRIERIEVSRTYRYISNELGLELLPIDPKQ---YVPRFSSKLDLPQEVE 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + R P +AAAIY A L ++++TQ E+ V +TEVT+R Y
Sbjct: 250 AKANEIIEETADPLLSG-RGPSGFAAAAIYAAALLCNEKRTQKEVADVAQVTEVTIRNRY 308
Query: 310 KELLE 314
+E +E
Sbjct: 309 QEQIE 313
>gi|218883370|ref|YP_002427752.1| transcription initiation factor IIB [Desulfurococcus kamchatkensis
1221n]
gi|218764986|gb|ACL10385.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
kamchatkensis 1221n]
Length = 319
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 106/206 (51%), Gaps = 6/206 (2%)
Query: 111 ERTFELLS----SSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSA 166
E+ EL+ + T +SV + +A ++ ++ IL L + + A +++R+
Sbjct: 107 EKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILNLPSYVKEEAARIYRNAVEK 166
Query: 167 TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPI 226
+R RS+E++ A + A RE + PR+L EI+ V +KEI + ++L L + +
Sbjct: 167 GIVRGRSIESIIAATIYLACREMKVPRSLDEITRHTRVNRKEIARCYRLLLRELHIK--V 224
Query: 227 NSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLED 286
+ ++PR L L A +A I + ++P ++AAA+Y+A +
Sbjct: 225 TTTDPVDYVPRIVHGLGLPGQAVKIAIEIINKAKEQGVTGGKDPAGLAAAAVYIAAEQLG 284
Query: 287 KRKTQAEICKVTGLTEVTLRKVYKEL 312
+++TQ EI V G+TEVT+R YKEL
Sbjct: 285 EKRTQKEIAHVAGVTEVTVRNRYKEL 310
>gi|167044633|gb|ABZ09305.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG7F19]
Length = 300
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 113/243 (46%), Gaps = 9/243 (3%)
Query: 68 NDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQ--LAELERTFELLSS-STTST 124
NDG D G T+ + + S + + + +G+ + ++++ E L + + S
Sbjct: 53 NDGTDR---SRVGAGTSITIHDMGLSTIIGQQNKDATGKPLDSSMKKSIERLRTWDSRSQ 109
Query: 125 SSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALV 183
+ S NLR L +D + + L L + + A ++R ++ RS+ L A +
Sbjct: 110 AHSSAERNLRQALSEMDKMKAKLSLTDPVIEKAAYIYRKAIERKLVKGRSIHGLVAACIY 169
Query: 184 QAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQ 243
+ R + RTL +I+ N+ +K++ + +++ L L P+ V R ++
Sbjct: 170 ASCRNTETSRTLDDIANGINIRRKDVARCYRLIFRELDLKIPVPDPVKGV--SRIASIAG 227
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L + + A +I ++P+ I+AAA+YLAC KTQ EI +G+TEV
Sbjct: 228 LGEKTKRKAINILNKAKKLGIVAGKDPMGIAAAALYLACISSGGSKTQKEISIASGVTEV 287
Query: 304 TLR 306
T+R
Sbjct: 288 TIR 290
>gi|18312777|ref|NP_559444.1| transcription initiation factor IIB [Pyrobaculum aerophilum str.
IM2]
gi|21363011|sp|Q8ZWS3.1|TF2B_PYRAE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|18160260|gb|AAL63626.1| transcription initiation factor IIB (TFIIB) [Pyrobaculum aerophilum
str. IM2]
Length = 333
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 6/213 (2%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ----IIDVASILGLDYDICDHAFQL 159
SG+ +++R E++ T + V R ++Q + + S +G+ + A ++
Sbjct: 112 SGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSAMGIPRPCIEQALEI 171
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R +R RSVEA+A AAL A R + PR L E+ ++E+ + ++L
Sbjct: 172 YRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLRE 231
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L + PI S+ I +++ R L+L+ A I + ++P ++AAA+Y
Sbjct: 232 LNVKVPI-SDPI-LYISRIAEQLKLSGEVVKTAIDILQKAKKAGITAGKDPAGLAAAAVY 289
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+A + +TQ + G+TEVT+R YKEL
Sbjct: 290 IASLMHGDNRTQKDFAVAAGVTEVTVRNRYKEL 322
>gi|448560614|ref|ZP_21634062.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582685|ref|ZP_21646189.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445722264|gb|ELZ73927.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445732333|gb|ELZ83916.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 288
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 87/209 (41%), Gaps = 7/209 (3%)
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
Q A + R ST + V A+ +I V S L L I D A LF +
Sbjct: 87 QFARMRRQHNRARISTKRERNQVY-----AFTEIRRVTSALSLPNHIRDQACSLFESAQN 141
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQP 225
LR RS+E A A + A R A R+++E+ + + E L L L P
Sbjct: 142 EDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKATEAEHQAAYGALNRDLGL--P 199
Query: 226 INSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLE 285
+ ++PRF T L L+ + A + +NP ++AA +Y A +
Sbjct: 200 VAPADPTEYLPRFATKLDLDSDTERRAREYVAEAREEGVVGGKNPCGVAAACLYTAARDR 259
Query: 286 DKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ TQAE V +T VTLRK Y L E
Sbjct: 260 GEDCTQAEAADVADVTPVTLRKTYVALRE 288
>gi|335433790|ref|ZP_08558606.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898428|gb|EGM36536.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 273
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 4/192 (2%)
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
+ TSS + + ++I + L L + A LF L RS+E +A AA
Sbjct: 81 SQTSSKAERNLMYGIMEIRRLVGRLSLSRSFREDACVLFETSQGEGLLHGRSIEGMAAAA 140
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCT 240
+ R A RT++E+S A+ + E+ L L L + PI+ ++PRF +
Sbjct: 141 VYAVCRIAGVSRTVEEVSTVAHASEDELTVAYTALNRELGLETGPIDPRE---YLPRFAS 197
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L + A + V + R P ++AA +Y A + D TQ E+ V G+
Sbjct: 198 RLDLRVDVERRARELASFVTEENLAGGRAPSGVAAACLYTAAREGDADVTQREVADVAGV 257
Query: 301 TEVTLRKVYKEL 312
TLR Y+++
Sbjct: 258 APATLRSTYQDV 269
>gi|448326321|ref|ZP_21515688.1| Transcription factor TFIIB cyclin-related protein, partial
[Natronobacterium gregoryi SP2]
gi|445612978|gb|ELY66695.1| Transcription factor TFIIB cyclin-related protein, partial
[Natronobacterium gregoryi SP2]
Length = 266
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATAAL A R+A
Sbjct: 77 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAG 136
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L QP + S ++PRF + L L +
Sbjct: 137 TPRSLDEISAVSRVEKMELTRTYRYVIRELGLEVQPADPES---YVPRFVSDLDLPDETE 193
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AA +Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 194 RMARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVANISEVTIRNRY 253
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 254 KELLEASDTATPA 266
>gi|254565175|ref|XP_002489698.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|238029494|emb|CAY67417.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|328350117|emb|CCA36517.1| Transcription initiation factor IIB [Komagataella pastoris CBS
7435]
Length = 342
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
+ A ++++ + L+ +S E++ AA+ A R+A PR+ +E+ +VP+ EIGK
Sbjct: 144 NGAKEVYKLVYNERSLKGKSQESIMAAAIGLACRKANVPRSFKELWALTDVPKNEIGKVF 203
Query: 214 KILGEALQLSQPINSNSIAVH--------------MPRFCTLLQLNKSAQVLATHIGEVV 259
KI+ + +Q + + V + RFC+ L L++ A +I
Sbjct: 204 KIIHKLIQQKHALAGGLLNVQNESIATTQTNAEALIGRFCSNLGLSRQITNAAEYIARRT 263
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319
R+P++++A IY+A + D + A+I + G+++ T++ YK L + ++L
Sbjct: 264 KEVGVLAGRSPVTVAATVIYMAASIFDASISPAQIAQRAGVSDGTIKTSYKYLYDKREEL 323
Query: 320 L 320
+
Sbjct: 324 V 324
>gi|390937904|ref|YP_006401642.1| transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
gi|390191011|gb|AFL66067.1| Transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
Length = 319
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 109/210 (51%), Gaps = 14/210 (6%)
Query: 111 ERTFELLS----SSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSA 166
E+ EL+ + T +SV + +A ++ ++ IL L + + A +++R+
Sbjct: 107 EKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILNLPSYVKEEAARIYRNAVEK 166
Query: 167 TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL---- 222
+R RS+E++ A + A RE + PR+L EI+ V +KEI + ++L L++
Sbjct: 167 GIVRGRSIESIIAATIYLACREMKVPRSLDEITRHTRVNRKEIARCYRLLLRELRIKVAT 226
Query: 223 SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLAC 282
+ P++ ++PR L L A +A I + ++P ++AAA+Y+A
Sbjct: 227 TDPVD------YVPRIVHGLGLPGQAVKIAIEIINKAKEQGVTGGKDPAGLAAAAVYIAA 280
Query: 283 QLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ +++TQ EI V G+TEVT+R YKEL
Sbjct: 281 EQLGEKRTQKEIAHVAGVTEVTVRNRYKEL 310
>gi|448371933|ref|ZP_21557052.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445647024|gb|ELZ00005.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 318
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 97/185 (52%), Gaps = 6/185 (3%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + ++R +R RS+E +ATAAL R+
Sbjct: 133 NLQFALSEIDRMASALGVPRSVREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EI+ + + + E+ + + + L L PI+ ++PRF + L L + +
Sbjct: 193 IPRSLEEITEVSRIERIEVSRTYRYISNELGLELLPIDPKQ---YVPRFSSKLNLPQEVE 249
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + R P +AAAIY A L ++++TQ E+ V +TEVT+R Y
Sbjct: 250 AKANEIIEETADPLLSG-RGPSGFAAAAIYAAALLCNEKRTQKEVADVAQVTEVTIRNRY 308
Query: 310 KELLE 314
+E +E
Sbjct: 309 QEQIE 313
>gi|448314361|ref|ZP_21504059.1| transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445595188|gb|ELY49300.1| transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 352
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Query: 159 LFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGE 218
++R L RS+E +ATA+L + R+A PR+L EIS + V + E+ + + +
Sbjct: 191 IYRRALEEDLLPGRSIEGVATASLYASARQAGTPRSLDEISAVSRVEKMELTRTYRYIIR 250
Query: 219 ALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAA 277
L L +P + ++PRF + L L+ + +A + E + + ++P+ ++AAA
Sbjct: 251 ELGLEVKPADPEH---YVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPVGLAAAA 307
Query: 278 IYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPS 322
+Y A L +++ TQ ++ +V ++EVT+R YKELLE D P+
Sbjct: 308 VYAAALLTNEKVTQNDVSEVASISEVTIRNRYKELLEASDTAAPA 352
>gi|150866589|ref|XP_001386238.2| hypothetical protein PICST_85155 [Scheffersomyces stipitis CBS
6054]
gi|149387845|gb|ABN68209.2| general RNA polymerase II transcription factor, TFIIB subunit
[Scheffersomyces stipitis CBS 6054]
Length = 350
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 22/204 (10%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + L + D A ++++ LR +S E++ AA+ R+A+ R+
Sbjct: 133 AYAKISQMCDGYQLPKIVQDGAKEVYKLVYDERPLRGKSQESIMAAAIFIGCRKAKVARS 192
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH--------------MPRFCT 240
+EI NVP+KEIGK KI+ + +Q N N++ + + R C+
Sbjct: 193 FKEIWALTNVPRKEIGKVFKIIDKVIQEKNAANPNALMFNQDNMQTTQTTAEDLIRRNCS 252
Query: 241 LLQLNKSAQVLATHIGEVVINKC----FCTRRNPISISAAAIYLACQLEDKRKTQAEICK 296
L LN AQV T+ E + +C R+P +I+A IY+A + ++I
Sbjct: 253 HLGLN--AQV--TNGAEYIARRCKEVGVLAGRSPTTIAATVIYMAALVFGIDLPPSKISD 308
Query: 297 VTGLTEVTLRKVYKELLENWDDLL 320
TG+++ T++ YK + E + L+
Sbjct: 309 KTGVSDGTIKTSYKVMYEEKEKLI 332
>gi|433638603|ref|YP_007284363.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448373609|ref|ZP_21557695.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433290407|gb|AGB16230.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445661561|gb|ELZ14344.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 317
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 99/189 (52%), Gaps = 5/189 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + + A ++R +R RS+E +AT+AL + R+
Sbjct: 128 NLKYALSEIDRMVSALGVPKPVKETASVIYRQALDRDLIRGRSIEGVATSALYMSCRKDD 187
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+E++ + V Q+EIG+ + + + L ++ +P N +PRFC+ L ++ +
Sbjct: 188 IPRSLEEVTAVSRVDQREIGRTYRYIADELDINLEPTNPRQF---VPRFCSELDVSSEVE 244
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + ++P +AAAIY A L ++ Q + + T VT+R Y
Sbjct: 245 TTAIDIIDETTELGLHSGKSPTGFAAAAIYAAGLLCEETIPQRAVAETAQTTVVTVRNRY 304
Query: 310 KELLENWDD 318
+E L+ D+
Sbjct: 305 REQLDAIDE 313
>gi|119873155|ref|YP_931162.1| transcription initiation factor IIB [Pyrobaculum islandicum DSM
4184]
gi|189029860|sp|A1RV37.1|TF2B_PYRIL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|119674563|gb|ABL88819.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum islandicum
DSM 4184]
Length = 333
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 6/222 (2%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ----IIDVASILGLDYDICDHAFQL 159
SG+ +++R E++ T + V R ++Q + + S +G+ + A ++
Sbjct: 112 SGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSSMGVPRPCVEQALEI 171
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R +R RSVEA+A AAL A R + PR L E+ ++E+ + ++L
Sbjct: 172 YRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLRE 231
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L + PI+ +++ R L+L+ A I + ++P ++AAA+Y
Sbjct: 232 LNVKVPISDP--VLYISRIAEQLKLSGEVVKTAIEILQKAKKAGITAGKDPAGLAAAAVY 289
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
+A L +TQ + G+TEVT+R YKEL + + +P
Sbjct: 290 IASLLHGDNRTQKDFAVAAGVTEVTVRNRYKELAKTLNIKVP 331
>gi|448418806|ref|ZP_21579983.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445676200|gb|ELZ28724.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 311
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ +AS+L L I D A QLFR + LR RS+EA+ATA++ A R + RTL +
Sbjct: 131 EVRRIASVLELSDSIRDQACQLFRSAQNEDLLRGRSIEAIATASVYGACRCSGLSRTLDD 190
Query: 198 ISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
I AA V Q + K L L L +QP+ + +PR + L + S + A +
Sbjct: 191 IVDAARVEQSRVKSAYKTLNTDLGLPTQPVRPSEF---VPRLASELDVPDSIRHRARRLA 247
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
E + T P +AA +Y A + E + TQ+E+ + +T T+R
Sbjct: 248 EQAESTSATTGVRPPGFAAACLYKAGREEGRWLTQSEVAEAANVTPPTIR 297
>gi|448289072|ref|ZP_21480250.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445584524|gb|ELY38840.1| transcription initiation factor TFB [Haloferax volcanii DS2]
Length = 319
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ +AS+L L + D A QLFR + LR RS+EA+A A++ A R R L +
Sbjct: 142 EVRRIASVLELSGSVRDQACQLFRSAQTEDLLRGRSIEAIAAASIYGACRCNGHSRLLDD 201
Query: 198 ISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
+ AA V Q + K L L L +QP+ + +PR + L + + A +
Sbjct: 202 VVDAARVEQSRVANAYKTLNTELGLPTQPVRPSEF---IPRLASELDVPAYIRQRARRLA 258
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
E + + P +AA +Y A + E + TQAE+ +V +T T+R L E
Sbjct: 259 EQSESSGAASGVKPSGFAAACLYKAGREEGRWLTQAEVAEVASVTATTIRSHRDTLKE 316
>gi|241958734|ref|XP_002422086.1| general transcription facto TFIIB, putative; transcription
initiation factor IIB, putative [Candida dubliniensis
CD36]
gi|223645431|emb|CAX40087.1| general transcription facto TFIIB, putative [Candida dubliniensis
CD36]
Length = 346
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 23/205 (11%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I ++ + L D A L++ L+ ++ +++ AA++ R A PRT
Sbjct: 128 AYQKISELCNGYQLPKSASDAAKHLYKAVREDRLLKGKTQDSIMAAAILLGCRRADVPRT 187
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQ---------LSQPINSNSIAVH-----MPRFCT 240
L+EI NVP K+I K ++ + ++ S ++S+ H + RFC+
Sbjct: 188 LEEIRALTNVPTKQIAKVTGLIKKIIRSHLNNEDASTSIVDETSSLTTHSAEDLIRRFCS 247
Query: 241 LLQLNKSAQVLATHIGEVVINKC----FCTRRNPISISAAAIYLACQ-LEDKRKTQAEIC 295
L L+ + T E V KC R+P +I+A +I+LA + L D + TQ +I
Sbjct: 248 HLGLS----LTITSASEYVARKCHDLGVLAGRSPTTIAATSIFLAAKSLGDTKLTQQQIR 303
Query: 296 KVTGLTEVTLRKVYKELLENWDDLL 320
TG++ T++ YK L EN DL+
Sbjct: 304 DKTGVSIGTIKNSYKILQENAKDLI 328
>gi|414590060|tpg|DAA40631.1| TPA: hypothetical protein ZEAMMB73_839050 [Zea mays]
Length = 330
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 10/193 (5%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++A LGL I D A ++F+ +R R+ +A+ A L A R+ PRT
Sbjct: 108 AFRTIANMADRLGLVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRT 167
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLNKSAQ 249
++EI S+A +KEIG+ + + + L++ + +H + RFC+ L + A
Sbjct: 168 VKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAV 227
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQL-EDKRKTQAEICKVTGLTEVTLRKV 308
A V ++ RR+PISI+AA IY+ QL EDK+ + C VT +V
Sbjct: 228 NAAKE--AVQRSEELDIRRSPISIAAAVIYMITQLSEDKKPLKGLECCPIVFFHVTDIQV 285
Query: 309 YKELLENWDDLLP 321
+LEN + P
Sbjct: 286 I--ILENLLQIYP 296
>gi|433640052|ref|YP_007285812.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|433291856|gb|AGB17679.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
Length = 289
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 9/210 (4%)
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
QLA L R + +T + S+ V + QI + L L D + A +LF +
Sbjct: 87 QLARLRREHDRARIATKADSNRVC-----GFSQIKGLVDRLSLPLDAREQACRLFESAQN 141
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQ 224
L RS+E A A + R + PRT+ E+ A+ E+ + L L +
Sbjct: 142 DGLLPGRSIEGFAAACVYTVARTLEVPRTIDEVVANASATDAELKAAYDAMNRELGLPTG 201
Query: 225 PINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQL 284
PI + ++PRF + L L+ + LA E ++ RNP ++AA +Y+A +
Sbjct: 202 PIEPTT---YVPRFASELDLSTDVERLARSFIERLVTNNAIGGRNPCGVAAACLYVAAKR 258
Query: 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ TQAE V + VT+RK + L E
Sbjct: 259 QGCPVTQAEAGSVADVAPVTIRKTVQTLSE 288
>gi|453083300|gb|EMF11346.1| cyclin-like protein [Mycosphaerella populorum SO2202]
Length = 358
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 19/207 (9%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L+AY QI + L + D A L++D + + + +AL + A R P
Sbjct: 134 LQAYKQIGALCDGWQLPSTVSDTAKHLYKDAEESRIFKGKGQDALIAGCVFLACRRNGVP 193
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMP---------------- 236
R+ +E+ V +KEIGK K+L + ++ S S P
Sbjct: 194 RSFREVMDLTKVTKKEIGKTYKMLEDFIRQRDKQKSASKTAVAPDVYNNAYTTTTADPAD 253
Query: 237 ---RFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAE 293
R+C++L +++ + +A + V+ R+P+S +AA I++A L + KT +
Sbjct: 254 LCQRYCSMLDMDQRSTNVAIALATVMTKTGALAGRSPLSSAAACIFMASMLMGQAKTPKD 313
Query: 294 ICKVTGLTEVTLRKVYKELLENWDDLL 320
I V +++ T+R YK L + LL
Sbjct: 314 IMAVAKVSDSTIRHAYKLLYAEKEKLL 340
>gi|448407770|ref|ZP_21573965.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445675020|gb|ELZ27555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 322
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 3/188 (1%)
Query: 132 NLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ A+ +I +AS L L + + A L+R L RS+E +ATA+L A R+
Sbjct: 134 NLKQAFGEIDRMASALALPDSVRETAGVLYRRAVEEGLLPGRSIEGMATASLYAATRQHG 193
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR + E + V QK I + + L L L+ I A ++P+F + L L+ A+
Sbjct: 194 APRRVTEFADVCRVSQKRIERAYRYLKTELGLA--IEPEDPAKYVPQFASALDLSDEAER 251
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + V + ++P ++AAA+Y A L ++ TQA++ V ++ VT+R Y+
Sbjct: 252 RAGELLAVAKRANRHSGKSPAGLAAAAVYAAATLVNESLTQADVSDVADVSRVTIRDRYQ 311
Query: 311 ELLENWDD 318
ELL+ + D
Sbjct: 312 ELLDVYAD 319
>gi|448684801|ref|ZP_21692888.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445782732|gb|EMA33573.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 339
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 3/201 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + A ++R L RS+E +ATAAL A+R+A
Sbjct: 136 NLKQALGEIDRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQAN 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
P+TL ++++ + V + E + + L L L + A ++ +F + L + + +
Sbjct: 196 LPQTLDDMAVVSRVDEMEFTRAYRYLNRELSLQ--VGPPDPATYLSKFVSELDADDALER 253
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + E + ++P+ ++AAAIY A L + TQ + + T ++ VT+R+ Y+
Sbjct: 254 QARALIEAGKEANVHSGKSPVGLAAAAIYAAGLLLGEEMTQETVSEATDISTVTIRERYR 313
Query: 311 ELLENWDDLLPSNYTPAVPPE 331
ELLE +L S A PE
Sbjct: 314 ELLEAEAELDDSAVDAASGPE 334
>gi|451996801|gb|EMD89267.1| hypothetical protein COCHEDRAFT_1205430 [Cochliobolus
heterostrophus C5]
Length = 375
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 126/330 (38%), Gaps = 52/330 (15%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCGRV+A+R + + D P Q ND DP
Sbjct: 57 TICGSCGRVLADRIIDTRSEWRTFSNDGKW------RPLTCTNQGND----DP------- 99
Query: 83 TAFSAWSLVPSPLF----LRSSHSFS-GQLAELERTFELLSSSTTSTSSSVMMDNLRAYL 137
S +PL L++ F G + R +L + S V AY
Sbjct: 100 ---SRIGDAANPLLHGSQLQTEIGFGDGGM----RVRDLSRAHNKSNHDKVNKALQAAYG 152
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
QI + + + A L++ A + +S +A+ + A R+ + R+ +E
Sbjct: 153 QITALCDSQNISRPTAETAKMLYKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFRE 212
Query: 198 ISIAANVPQKEIGKYIKILGEALQLSQ-----------------------PINSNSIAVH 234
I NV +KE+G+ K+L +Q SQ + S A
Sbjct: 213 IFKMTNVSKKEVGRTFKVLEAFIQKSQNSGPSVAGNGAVIDTVNLLNQKGGTTATSAASL 272
Query: 235 MPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 294
MPR C L L Q++A + V + R+P+SI+ A +YL L + K+ EI
Sbjct: 273 MPRACAKLALGTQVQMVAEECADQVAHYGVAAGRSPLSIAGACLYLVSHLMGQPKSPKEI 332
Query: 295 CKVTGLTEVTLRKVYKELLENWDDLLPSNY 324
+++ T+R YK + D ++ +
Sbjct: 333 GLAVEVSDGTIRTAYKLMHMEQDKIIKDEW 362
>gi|389848542|ref|YP_006350780.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448618694|ref|ZP_21666806.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388245848|gb|AFK20793.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445746072|gb|ELZ97535.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 319
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ +AS L L + D A QLFR + LR RS+EA+A A++ A R R L +
Sbjct: 144 EVRRIASALELTDSVRDQACQLFRSAQNEDLLRGRSIEAIAAASVHGACRCNGHSRLLDD 203
Query: 198 ISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLN----KSAQVLA 252
+ A + Q + K L L L +QP+ + +PR + L ++ + A VL+
Sbjct: 204 VVDRARIEQSRVANAYKTLNTELGLPTQPVRPSEF---IPRLASELGISDAIRRRAVVLS 260
Query: 253 THIGEVVI-NKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 311
H E I N C P ++AA IY A Q + TQ + G++ VT+R E
Sbjct: 261 KHHQETAISNGC-----RPSGVAAACIYKAAQKHGRPLTQQRVADAAGMSAVTVRARRDE 315
Query: 312 L 312
L
Sbjct: 316 L 316
>gi|448733793|ref|ZP_21716035.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445802313|gb|EMA52620.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 335
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 97/184 (52%), Gaps = 3/184 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I + S LG+ D+ + A ++R + L RS+E ++TAAL AIR+
Sbjct: 139 NLKQALGEIERMGSALGVPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAAIRQMG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR++++++ V + E + + + + L L I ++ RF + L +N +
Sbjct: 199 LPRSVEDVAAVTRVDEMEFKRAYRYINQELGLE--IGPPDPQQYVSRFASDLDVNDETER 256
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + ++P+ ++ AA+Y A L ++ TQ E+ +V G++ VT+R Y
Sbjct: 257 RARDLLRTAQEQAAHSGKSPVGLAGAALYAAGLLTNRELTQNEVSEVAGVSNVTIRNRYH 316
Query: 311 ELLE 314
ELLE
Sbjct: 317 ELLE 320
>gi|347975957|ref|XP_003437308.1| unnamed protein product [Podospora anserina S mat+]
gi|170940166|emb|CAP65393.1| unnamed protein product [Podospora anserina S mat+]
Length = 348
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 129/325 (39%), Gaps = 48/325 (14%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
C SCG V+ ER + + D +D PS N +D D Q T
Sbjct: 47 CESCGLVLGERIIDTRSEWRTFSNDDQ----GNDDPSRVGDGPNLMIDGDQLQTT----- 97
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
+F G+ A + L + T+ S + L AY I
Sbjct: 98 ----------------IAFDGKGA---KNLSHLQNKMTNDKGSKQL--LNAYRDIQSFTD 136
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
+ + + A +++ A L+ +S EA+ + A R+A RT +EI V
Sbjct: 137 SINTGTQVANAAKHIYKLVDDAKALKGKSQEAIIAGCIFIACRQANADRTFREIYRLTKV 196
Query: 205 PQKEIGKYIKILGEALQLSQ---------PIN------SNSIAVHM-PRFCTLLQLNKSA 248
+KEIG+ K L LQ + P N +++ AV + R+C+ +
Sbjct: 197 SKKEIGRVFKQLETFLQKAGGADDITKAGPFNQTYQAKASTTAVGLCARYCSNMGFRNPV 256
Query: 249 QV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+V +A + + R+P+S++AA IY+A L + K EI V G+++ T++
Sbjct: 257 RVEDVARRLAKKSQQVADLAGRSPLSVAAACIYMASHLVGEPKASKEIAGVAGVSDGTVK 316
Query: 307 KVYKELLENWDDLLPSNYTPAVPPE 331
Y+ L + D LL P P+
Sbjct: 317 TAYRYLYQAKDALLTKEEFPDDMPD 341
>gi|292653995|ref|YP_003533893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|291369732|gb|ADE01960.1| transcription initiation factor TFB [Haloferax volcanii DS2]
Length = 307
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ +AS+L L + D A QLFR + LR RS+EA+A A++ A R R L +
Sbjct: 130 EVRRIASVLELSGSVRDQACQLFRSAQTEDLLRGRSIEAIAAASIYGACRCNGHSRLLDD 189
Query: 198 ISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
+ AA V Q + K L L L +QP+ + +PR + L + + A +
Sbjct: 190 VVDAARVEQSRVANAYKTLNTELGLPTQPVRPSEF---IPRLASELDVPAYIRQRARRLA 246
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
E + + P +AA +Y A + E + TQAE+ +V +T T+R L E
Sbjct: 247 EQSESSGAASGVKPSGFAAACLYKAGREEGRWLTQAEVAEVASVTATTIRSHRDTLKE 304
>gi|429190412|ref|YP_007176090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134630|gb|AFZ71641.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 324
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATAAL A R+A
Sbjct: 135 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAG 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L EIS + V + E+ + + + L L QP + S ++PRF + L L +
Sbjct: 195 TPRSLDEISAVSRVEKMELTRTYRYVIRELGLEVQPADPES---YVPRFVSDLDLPDETE 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
+A + E + + ++P+ ++AA +Y A L +++ TQ E+ +V ++EVT+R Y
Sbjct: 252 RMARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVANISEVTIRNRY 311
Query: 310 KELLENWDDLLPS 322
KELLE D P+
Sbjct: 312 KELLEASDTATPA 324
>gi|379003108|ref|YP_005258780.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
gi|375158561|gb|AFA38173.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
Length = 348
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 102/213 (47%), Gaps = 6/213 (2%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ----IIDVASILGLDYDICDHAFQL 159
SG+ +++R E++ T + V R ++Q + + S +G+ + A ++
Sbjct: 127 SGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLKSSMGVPRPCVEQALEI 186
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R +R RSVEA+A AAL A R + PR L E+ ++E+ + ++L
Sbjct: 187 YRQALEKELVRGRSVEAMAAAALYMACRMMRMPRPLDELVRYTKASRREVARCYRLLLRE 246
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L + PI+ +++ R L+L+ A I + ++P ++AAA+Y
Sbjct: 247 LNVKVPISDP--VLYISRIAEQLKLSGEVVKAAIDILQRAKKAGITAGKDPAGLAAAAVY 304
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+A + +TQ + G+TEVT+R YKEL
Sbjct: 305 IASLMHGDNRTQKDFAVAAGVTEVTVRNRYKEL 337
>gi|321260170|ref|XP_003194805.1| transcription initiation factor IIB [Cryptococcus gattii WM276]
gi|317461277|gb|ADV23018.1| Transcription initiation factor IIB, putative [Cryptococcus gattii
WM276]
Length = 438
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 152 ICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211
+ + A +++ A ++ ++ A+ A +V A R+A+ RT QE+ A + +KE+G+
Sbjct: 196 VRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCKALKISKKELGQ 255
Query: 212 YIKILGEALQLSQPINSNSIAVH------------MPRFCTLLQLNKSAQVLATHIGEVV 259
+ +Q S S ++VH + RF L L + ++ HI
Sbjct: 256 VFNHVKSVVQSSSAQGS-MVSVHGSNNAQESAEGLLGRFANYLDLGNAVFNVSKHIAGEA 314
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319
+ K R+P+SI+A +Y C L K T +I + G++E T + + K + DD+
Sbjct: 315 VAKSAIDGRSPVSIAAGVLYFTCVLLGKSTTAKDISAMGGVSESTTKLITKMVANKLDDV 374
Query: 320 L 320
+
Sbjct: 375 I 375
>gi|145592173|ref|YP_001154175.1| transcription initiation factor IIB [Pyrobaculum arsenaticum DSM
13514]
gi|189029859|sp|A4WMA6.1|TF2B_PYRAR RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|145283941|gb|ABP51523.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
arsenaticum DSM 13514]
Length = 333
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 102/213 (47%), Gaps = 6/213 (2%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ----IIDVASILGLDYDICDHAFQL 159
SG+ +++R E++ T + V R ++Q + + S +G+ + A ++
Sbjct: 112 SGRELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLKSSMGVPRPCVEQALEI 171
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R +R RSVEA+A AAL A R + PR L E+ ++E+ + ++L
Sbjct: 172 YRQALEKELVRGRSVEAMAAAALYMACRMMRMPRPLDELVRYTKASRREVARCYRLLLRE 231
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L + PI+ +++ R L+L+ A I + ++P ++AAA+Y
Sbjct: 232 LNVKVPISDP--VLYISRIAEQLKLSGEVVKAAIDILQRAKKAGITAGKDPAGLAAAAVY 289
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+A + +TQ + G+TEVT+R YKEL
Sbjct: 290 IASLMHGDNRTQKDFAVAAGVTEVTVRNRYKEL 322
>gi|406699681|gb|EKD02880.1| transcription initiation factor IIB [Trichosporon asahii var.
asahii CBS 8904]
Length = 403
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 14/231 (6%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSVMMDNLR---AYLQIIDVASILGLDYDICDHAFQLF 160
+G +L+R + T+T+S + A+ +I +V + L I + A +
Sbjct: 85 TGMSRDLQRAQNRANQQATATASGTRSTPAQLQAAFSRINEVCDSMQLPRSIAERAQHAY 144
Query: 161 RDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIK-----I 215
+ + + + + A ++ A R A R+ +E+ A VP+ ++GK +
Sbjct: 145 VIGDEQSVSKGKHPDTIIAACVLFACRAAGAARSFREVGKAVKVPKADLGKVFNELRMVV 204
Query: 216 LGEALQ--LSQPIN----SNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRN 269
+ E + +SQP S S + RFC L L + + HI + K R+
Sbjct: 205 MAEQQRRGISQPQGFSSASESTEGMLGRFCNYLDLGNTIFNASKHIAVTAVKKSCIDGRS 264
Query: 270 PISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
P+SI+A ++ C L + T EI V G++E T++ + K++ E+ D ++
Sbjct: 265 PLSIAAGVLFFTCILFENSSTPKEISGVAGVSESTIKLITKKIAEDVDKVI 315
>gi|156062044|ref|XP_001596944.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980]
gi|154696474|gb|EDN96212.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 350
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 29/213 (13%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L AY +I + + ++ D A LF+ A + +S EA+ + A R+ P
Sbjct: 124 LAAYKEIGAHCDAVNIPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCDVP 183
Query: 193 RTLQEISIAANVPQKEIGKYIKIL-----------------------GEALQLSQPINSN 229
RT +EI V +K+IG+ K L E+ Q + N+
Sbjct: 184 RTFREIYALTKVSKKDIGRTFKALEKFFASDSSAKKARAEAVGAPASTESYQTTTSTNAK 243
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIG--EVVINKCFCTRRNPISISAAAIYLACQLEDK 287
+ R+C+ L L KS Q + G E V R+P+S++AA IY+A L K
Sbjct: 244 DLCT---RYCSQLGL-KSQQFVKVSQGLAEKVSTVGDLAGRSPLSVAAACIYMASALLGK 299
Query: 288 RKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
K+ +I +V G+++ T+R YK L + + L+
Sbjct: 300 PKSAKDISQVAGVSDGTIRTAYKYLYADREKLI 332
>gi|448616659|ref|ZP_21665369.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751314|gb|EMA02751.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 288
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 2/190 (1%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
SS + + A+ +I V LGL I D A LF + LR RS+E A A +
Sbjct: 101 SSKRERNQVYAFTEIRRVTGALGLPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYA 160
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQL 244
A R A R+++E+ + + E + L L L P+ ++PRF T L L
Sbjct: 161 ACRVAGISRSVEEVCDVSKSTESEHQAAYRALNRDLGL--PVAPADPTEYLPRFATKLDL 218
Query: 245 NKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
++ + A + +NP ++AA +Y A + + TQ++ V +T VT
Sbjct: 219 DRDTERRAREYVAEARDDGLVAGKNPCGVAAACLYTAARDLGEDCTQSDAADVADVTPVT 278
Query: 305 LRKVYKELLE 314
LRK Y L +
Sbjct: 279 LRKTYVALRD 288
>gi|161528487|ref|YP_001582313.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339788|gb|ABX12875.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 303
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 97/192 (50%), Gaps = 2/192 (1%)
Query: 123 STSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAAL 182
S S+S +A+ + +++ LGL + + LFR + L RS + AA+
Sbjct: 106 SRSASTAKSFQKAFTMLDGISAKLGLPEPVIEQTAYLFRKIAAKKILAGRSTAGILCAAI 165
Query: 183 VQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLL 242
R PRTLQ+++ A NV +K I + + L L ++ I + V R +
Sbjct: 166 YITCRMTNTPRTLQDVANAGNVNKKNIQRTYRFLARELDITPEIYHPTEFV--TRIAKAV 223
Query: 243 QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
+++ + LA I ++ +NP++++AAA YLA D+R +Q +I KV+G++
Sbjct: 224 DISEKTERLAFRILDLSARNGVLESKNPMAMAAAATYLASVKNDERISQLKISKVSGISA 283
Query: 303 VTLRKVYKELLE 314
VT+R KE+L+
Sbjct: 284 VTIRDRTKEILK 295
>gi|310797049|gb|EFQ32510.1| transcription factor TFIIB [Glomerella graminicola M1.001]
Length = 351
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 126/319 (39%), Gaps = 48/319 (15%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CGSCG V+ ER + A D Q ND DP + +
Sbjct: 49 CGSCGLVVGERIIDTRSEWRTFAND---------------DQGND----DPSRVGDAVNP 89
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
S + + + S QLA L+ S S S+M +AY +I
Sbjct: 90 LLNGSQLETTIAFGDGRD-SKQLARLQN-----KSQNDKASKSLM----QAYKEIGAFCD 139
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
+ L ++ D A +F+ ++ + EA+ + A R+ RT +EI +V
Sbjct: 140 SINLGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVTHV 199
Query: 205 PQKEIGKYIKILGEALQLSQPIN-----------------SNSIAVHMPRFCTLLQLNKS 247
+KEIG+ K L LQ + N S S RFC+ L +
Sbjct: 200 SKKEIGRVFKQLESFLQKIKEENPRGAGSLSNLDGYKASASTSAEDLCTRFCSNLNFRNA 259
Query: 248 AQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
++ ++ + + R+P+S++AA IY+A L + +T EI V G+++ T+
Sbjct: 260 QKIENVSRALARKTSSVSELAGRSPLSVAAACIYMASHLMKEVRTSKEIASVAGVSDGTI 319
Query: 306 RKVYKELLENWDDLLPSNY 324
+ Y+ L + D L+ +
Sbjct: 320 KTAYRFLYQARDRLIEKEW 338
>gi|448082287|ref|XP_004195101.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359376523|emb|CCE87105.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 20/203 (9%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + L + D A ++++ LR +S E++ AA+ R+A R+
Sbjct: 133 AYAKISQMCDGYQLPRIVQDSAKEVYKLVYEERPLRGKSQESIMAAAIFIGCRKAGVARS 192
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH-----------------MPR 237
+EI NVP+KEIGK KI+ +++ + N + H + R
Sbjct: 193 FKEIWALTNVPRKEIGKVFKIM---IRIVREKNESDPNAHSLIQDNMQTSQTSAEDLIRR 249
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC+ L LN A +I + R+PI+I+A IY+A + ++I
Sbjct: 250 FCSHLGLNTQITNAAEYIARRCKDVGVLAGRSPITIAATVIYMAALIFGNELQPSKIADK 309
Query: 298 TGLTEVTLRKVYKELLENWDDLL 320
TG+++ T++ YK L E + L+
Sbjct: 310 TGVSDGTIKTSYKVLYEEKEKLV 332
>gi|389845720|ref|YP_006347959.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243026|gb|AFK17972.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 289
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 2/190 (1%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
SS + + A+ +I V LGL I D A LF + LR RS+E A A +
Sbjct: 102 SSKRERNQVYAFTEIRRVTGALGLPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYA 161
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQL 244
A R A R+++E+ + + E + L L L P+ ++PRF T L L
Sbjct: 162 ACRVAGISRSVEEVCDVSKSTESEHQAAYRALNRDLGL--PVAPADPTEYLPRFATKLDL 219
Query: 245 NKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
++ + A + +NP ++AA +Y A + + TQ++ V +T VT
Sbjct: 220 DRDTERRAREYVAEARDDGLVAGKNPCGVAAACLYTAARDLGEDCTQSDAADVADVTPVT 279
Query: 305 LRKVYKELLE 314
LRK Y L +
Sbjct: 280 LRKTYVALRD 289
>gi|58268742|ref|XP_571527.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227762|gb|AAW44220.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 371
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 13/188 (6%)
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
+ A +++ A ++ ++ A+ A +V A R+A+ RT QE+ A + +KE+G+
Sbjct: 157 ERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCKALKISKKELGQVF 216
Query: 214 KILGEALQLSQPINSNSIAVH------------MPRFCTLLQLNKSAQVLATHIGEVVIN 261
+ +Q S + ++VH + RF L L + ++ HI +
Sbjct: 217 NHVKSVVQ-SSSAQGSMVSVHGSNNAQESAEGLLGRFANYLDLGNAVFNVSKHIAGEAVA 275
Query: 262 KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
K R+P+SI+A +Y C L K T +I + G++E T + + K + DD++
Sbjct: 276 KSAIDGRSPVSIAAGVLYFTCVLLGKSTTAKDISAMGGVSESTTKLITKMVASKLDDVIR 335
Query: 322 SNYTPAVP 329
+ P
Sbjct: 336 PEWRTEYP 343
>gi|320582171|gb|EFW96389.1| general transcription factor TFIIB [Ogataea parapolymorpha DL-1]
Length = 338
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 14/204 (6%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + L + D A ++++ LR +S EA+ A++ R+A PRT
Sbjct: 123 AYSKISQLCDGYQLPRVVQDGAKEVYKLVHDDKMLRGKSQEAIMAASIFFGCRKADVPRT 182
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQ---------LSQPINSNSIAVHMP-----RFCT 240
EI NVP+K+IGK KI+ + +Q +++ N+ S P RFC+
Sbjct: 183 YNEIWALTNVPKKDIGKVFKIIKQIIQRKDAEQDGLITRRNNNISTTQTNPEDLVGRFCS 242
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L+ A HI + R+P +I+A IY + + ++ + I + TG+
Sbjct: 243 HLGLSPQITTSAQHIARTLKELGVLEGRSPTTIAATVIYFSTAIFKQQIPLSRISEKTGV 302
Query: 301 TEVTLRKVYKELLENWDDLLPSNY 324
+E T++ Y + D L+ ++
Sbjct: 303 SEGTIKSSYVHMSAARDKLVDQSW 326
>gi|374325545|ref|YP_005083742.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
gi|356640811|gb|AET31490.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
Length = 333
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 6/213 (2%)
Query: 104 SGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ----IIDVASILGLDYDICDHAFQL 159
SG+ +++R E++ T + V R ++Q + + S +G+ + A ++
Sbjct: 112 SGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSSMGIPRPCIEQALEI 171
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R +R RSVEA+A AAL A R + PR L E+ ++E+ + ++L
Sbjct: 172 YRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLRE 231
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L + PI S+ I +++ R L+L+ A I + ++P ++AAA+Y
Sbjct: 232 LNVKVPI-SDPI-LYISRIAEQLKLSGEVIKSAIDILQKAKKAGITAGKDPAGLAAAAVY 289
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+A + +TQ + G+TEVT+R YKEL
Sbjct: 290 IASLMHGDNRTQKDFAVAAGVTEVTVRNRYKEL 322
>gi|189204392|ref|XP_001938531.1| transcription initiation factor IIB [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985630|gb|EDU51118.1| transcription initiation factor IIB [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 338
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 24/210 (11%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY QI + + + A LF+ A + +S +A+ + A R+ + R+
Sbjct: 112 AYGQITALCDSQNISRPTAETAKMLFKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRS 171
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH-------------------- 234
+EI NV +KE+G+ K+L +Q SQ SIA +
Sbjct: 172 FREIFKMTNVSKKEVGRTFKVLEAFIQKSQNNGGPSIAGNGAVIDTVNLLNQKGGTTATS 231
Query: 235 ----MPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKT 290
MPR C L L Q++A + V + R+P+SI+ A +YL L + K+
Sbjct: 232 ASSLMPRACAKLALGTQVQMVAEECADQVAHYGVAAGRSPLSIAGACLYLVSHLMGQPKS 291
Query: 291 QAEICKVTGLTEVTLRKVYKELLENWDDLL 320
EI +++ T+R YK + D ++
Sbjct: 292 PKEIGLAVEVSDGTIRTAYKLMHMEQDKII 321
>gi|58268740|ref|XP_571526.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227761|gb|AAW44219.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 447
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 13/188 (6%)
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
+ A +++ A ++ ++ A+ A +V A R+A+ RT QE+ A + +KE+G+
Sbjct: 233 ERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCKALKISKKELGQVF 292
Query: 214 KILGEALQLSQPINSNSIAVH------------MPRFCTLLQLNKSAQVLATHIGEVVIN 261
+ +Q S + ++VH + RF L L + ++ HI +
Sbjct: 293 NHVKSVVQ-SSSAQGSMVSVHGSNNAQESAEGLLGRFANYLDLGNAVFNVSKHIAGEAVA 351
Query: 262 KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
K R+P+SI+A +Y C L K T +I + G++E T + + K + DD++
Sbjct: 352 KSAIDGRSPVSIAAGVLYFTCVLLGKSTTAKDISAMGGVSESTTKLITKMVASKLDDVIR 411
Query: 322 SNYTPAVP 329
+ P
Sbjct: 412 PEWRTEYP 419
>gi|448470297|ref|ZP_21600440.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808271|gb|EMA58344.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 237
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 106/184 (57%), Gaps = 5/184 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R S L RS+E +ATAAL A R+A
Sbjct: 49 NLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQAG 108
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E + + V + E+ + + + L+L QP + S ++PRF + L L++ Q
Sbjct: 109 NPRSLDEFTAVSRVDKMELTRTYRYVIRELKLEIQPADPGS---YVPRFVSRLDLSEETQ 165
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
LA + + + ++P+ ++A+A+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 166 RLARDLLDGAKQAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSAVADISEVTIRNRY 225
Query: 310 KELL 313
KELL
Sbjct: 226 KELL 229
>gi|255730671|ref|XP_002550260.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240132217|gb|EER31775.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 344
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 22/204 (10%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY++I + L + D A ++++ LR +S E++ A++ R+A R+
Sbjct: 127 AYVKISQMCDGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARS 186
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSN-------SIAVH-------MPRFCT 240
+EI NVP+KEIGK KI+ + ++ N N SI+ + RFC+
Sbjct: 187 FKEIWALTNVPRKEIGKVFKIMDKIIREKNAANPNAAYYTQDSISTTQTSAEDLIRRFCS 246
Query: 241 LLQLNKSAQVLATHIGEVVINKC----FCTRRNPISISAAAIYLACQLEDKRKTQAEICK 296
L +N AQV T+ E + +C R+P +I+A IY+A + ++I
Sbjct: 247 HLGVN--AQV--TNGAEYIARRCKEVGVLAGRSPTTIAATVIYMASLVFGIDLPPSKISD 302
Query: 297 VTGLTEVTLRKVYKELLENWDDLL 320
TG+++ T++ YK + E + L+
Sbjct: 303 KTGVSDGTIKTSYKYMYEEKEKLI 326
>gi|134113140|ref|XP_774595.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257239|gb|EAL19948.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 371
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 13/188 (6%)
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
+ A +++ A ++ ++ A+ A +V A R+A+ RT QE+ A + +KE+G+
Sbjct: 157 ERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCKALKISKKELGQVF 216
Query: 214 KILGEALQLSQPINSNSIAVH------------MPRFCTLLQLNKSAQVLATHIGEVVIN 261
+ +Q S + ++VH + RF L L + ++ HI +
Sbjct: 217 NHVKSVVQ-SSSAQGSMVSVHGSNNAQESAEGLLGRFANYLDLGNAVFNVSKHIAGEAVA 275
Query: 262 KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
K R+P+SI+A +Y C L K T +I + G++E T + + K + DD++
Sbjct: 276 KSAIDGRSPVSIAAGVLYFTCVLLGKSTTAKDISAMGGVSESTTKLITKMVASKLDDVIR 335
Query: 322 SNYTPAVP 329
+ P
Sbjct: 336 PEWRTEYP 343
>gi|257387108|ref|YP_003176881.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257169415|gb|ACV47174.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 286
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 9/208 (4%)
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
Q+A L R S T S + +++I + S L L I D A LF
Sbjct: 85 QMARLRREH-----SRAQTGSKRDRNQRIGFIEIRRLVSRLDLSSTIRDRACVLFESAQE 139
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQ 224
A L RS+E A AA+ R ++ RT++E++ A E+ + L L +
Sbjct: 140 ADLLVGRSIEGFAAAAVYATCRTSEIARTVEEVAADAQASTGELRVAYDAINRELGLPTG 199
Query: 225 PINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQL 284
PI+ ++PRF + L + + AT + ++ + +NP ++AA +Y A +
Sbjct: 200 PIDPRE---YLPRFASELDVPHEIERRATALADLAAERNLIAGKNPGGVAAACLYTAARE 256
Query: 285 EDKRKTQAEICKVTGLTEVTLRKVYKEL 312
D TQA V ++ VTLR Y+ L
Sbjct: 257 ADYELTQARAAAVADVSPVTLRSTYQAL 284
>gi|361129570|gb|EHL01473.1| putative Transcription initiation factor IIB [Glarea lozoyensis
74030]
Length = 342
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN 171
R+ +LL + + + L AY +I + + ++ D A LF+ +
Sbjct: 105 RSRDLLRAQGKTGNDKSTKSLLAAYKEIGAHCDAVNIPKNVSDTAKYLFKQVDDGKAFKG 164
Query: 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI 231
+S +A+ + A R+ PRT +EI V +K+IG+ K L EA + N+
Sbjct: 165 KSQDAIIAGCIFIACRQCNVPRTFREIFALTKVSKKDIGRVFKSL-EAF-FGKQNNAKQN 222
Query: 232 AVHMP----------RFCTLLQLN-KSAQVL--ATHIGEVVINKCFCTRRNPISISAAAI 278
AV+ P LQL KS Q + ++ + E R+P+S++AA I
Sbjct: 223 AVNGPPKEEYKNTQSTNAVDLQLGLKSQQFVKVSSGLAEKTPTVAELAGRSPLSVAAACI 282
Query: 279 YLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNY 324
Y+A L K KT EI V G+++ T+R YK L + L+ ++
Sbjct: 283 YMASHLLGKPKTPKEISVVAGVSDGTIRTAYKHLYNEKERLIDPDW 328
>gi|449297000|gb|EMC93019.1| hypothetical protein BAUCODRAFT_270595 [Baudoinia compniacensis
UAMH 10762]
Length = 360
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 22/231 (9%)
Query: 112 RTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN 171
R+ EL + S L+AY QI + L + D A L++D + R
Sbjct: 112 RSRELHRAQNKSNMDKTNKGLLQAYKQIGALCDGWQLPSSVSDTAKHLYKDADESRLFRG 171
Query: 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI 231
+S EAL + A R PR+ +E+ V +KEIG+ K+L + + + N +
Sbjct: 172 KSQEALIAGCVFLACRRNNVPRSFREVMELTKVSKKEIGRTFKLLEQFYMKNTKLAKNGV 231
Query: 232 ----------------------AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRN 269
A RFC L ++++A ++ + + + R+
Sbjct: 232 STVAGGQLVSNEAYTGSQNSNPAELCDRFCNALGMSRTASNVSIALAQRMTATGVLAGRS 291
Query: 270 PISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
P+S + A IY+A L + K +I +++ T+R YK L ++ + ++
Sbjct: 292 PLSSAGACIYMASYLMGEPKNPKDISNAAHVSDSTIRHAYKILYQDKEKII 342
>gi|409731108|ref|ZP_11272645.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722791|ref|ZP_21705320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788613|gb|EMA39320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 336
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 98/184 (53%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ D+ + A ++R + L RS+E ++TAAL IR+
Sbjct: 140 NLKQALGEIDRMASALGVPKDVRETASVIYRRALAENLLPGRSIEGMSTAALYAGIRQMG 199
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR+++E+ + V + E + + + + L L I ++ RF + L +++ +
Sbjct: 200 LPRSVEEVGAVSRVDEMEFKRAYRYINQELDLQ--IAPPKPQQYLSRFASDLDVSEETER 257
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + ++P+ ++ AA+Y A L +++ TQ E+ +V ++ VT+R Y
Sbjct: 258 RARELLTTAEEQAIHSGKSPVGLAGAALYAAGILTNRKLTQDEVSEVAEVSNVTIRNRYH 317
Query: 311 ELLE 314
EL++
Sbjct: 318 ELMD 321
>gi|358400578|gb|EHK49904.1| hypothetical protein TRIATDRAFT_297298 [Trichoderma atroviride IMI
206040]
Length = 348
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 98/210 (46%), Gaps = 18/210 (8%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++AY +I+ + + + ++ + A +F+ ++ + EA+ + A R+ P
Sbjct: 124 MQAYKEIVALCETIHMGANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVP 183
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQ------------LSQPINSNSIAVHMP---- 236
RT +EI +V +KE+G+ K L LQ L+ N + +V
Sbjct: 184 RTFREIFNLTSVSKKEVGRVFKQLQNFLQKIQDNEGESGSGLNTVTNYENTSVGAEDLCG 243
Query: 237 RFCTLLQLNKSAQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 294
R+ + L ++ ++ + E + R+P+S++AA IY+AC L + ++ A I
Sbjct: 244 RYVSQLGFKNQQKISKISRDLAEQATDISALAGRSPLSVAAACIYMACHLMGEPRSSAPI 303
Query: 295 CKVTGLTEVTLRKVYKELLENWDDLLPSNY 324
K TG+++ T++ YK L D L+ +
Sbjct: 304 AKQTGVSDGTVKTAYKFLFAARDQLIKKEW 333
>gi|241948569|ref|XP_002417007.1| general transcription factor TFIIB, putative; transcription factor
E, putative; transcription initiation factor IIB,
putative [Candida dubliniensis CD36]
gi|223640345|emb|CAX44595.1| general transcription factor TFIIB, putative [Candida dubliniensis
CD36]
Length = 344
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 14/200 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY++I + L + D A ++++ LR +S E++ A++ R+A R+
Sbjct: 127 AYIKISQMCDGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARS 186
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH--------------MPRFCT 240
+EI NVP+KEIGK KI+ + ++ N N+ + RFC+
Sbjct: 187 FKEIWALTNVPRKEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCS 246
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L +N A +I R+P +I+A IY+A + ++I TG+
Sbjct: 247 HLGVNTQVTNGAEYIARRCKEVGVLAGRSPTTIAATVIYMASLVFGFDLPPSKISDKTGV 306
Query: 301 TEVTLRKVYKELLENWDDLL 320
++ T++ YK + E + L+
Sbjct: 307 SDGTIKTSYKYMYEEKEKLI 326
>gi|238879169|gb|EEQ42807.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 344
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 14/200 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY++I + L + D A ++++ LR +S E++ A++ R+A R+
Sbjct: 127 AYIKISQMCDGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARS 186
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH--------------MPRFCT 240
+EI NVP+KEIGK KI+ + ++ N N+ + RFC+
Sbjct: 187 FKEIWALTNVPRKEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCS 246
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L +N A +I R+P +I+A IY+A + ++I TG+
Sbjct: 247 HLGVNTQVTNGAEYIARRCKEVGVLAGRSPTTIAATVIYMASLVFGFDLPPSKISDKTGV 306
Query: 301 TEVTLRKVYKELLENWDDLL 320
++ T++ YK + E + L+
Sbjct: 307 SDGTIKTSYKYMYEEKEQLI 326
>gi|68468997|ref|XP_721557.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|68469546|ref|XP_721286.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443195|gb|EAL02479.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443477|gb|EAL02759.1| likely transcription factor TFIIB [Candida albicans SC5314]
Length = 344
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 14/200 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY++I + L + D A ++++ LR +S E++ A++ R+A R+
Sbjct: 127 AYIKISQMCDGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARS 186
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH--------------MPRFCT 240
+EI NVP+KEIGK KI+ + ++ N N+ + RFC+
Sbjct: 187 FKEIWALTNVPRKEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCS 246
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L +N A +I R+P +I+A IY+A + ++I TG+
Sbjct: 247 HLGVNTQVTNGAEYIARRCKEVGVLAGRSPTTIAATVIYMASLVFGFDLPPSKISDKTGV 306
Query: 301 TEVTLRKVYKELLENWDDLL 320
++ T++ YK + E + L+
Sbjct: 307 SDGTIKTSYKYMYEEKEQLI 326
>gi|448086815|ref|XP_004196195.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359377617|emb|CCE86000.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
D A ++++ LR +S E++ AA+ R+A R+ +EI NVP+KEIGK
Sbjct: 152 DSAKEVYKLVYEERPLRGKSQESIMAAAIFIGCRKAGVARSFKEIWALTNVPRKEIGKVF 211
Query: 214 KILGEALQLSQPINSNSIAV--------------HMPRFCTLLQLNKSAQVLATHIGEVV 259
KI+ ++ + N+ ++ + RFC+ L LN A +I
Sbjct: 212 KIMIRIVREKNESDPNAHSLIQDNMQTSQTSAEDLIRRFCSHLGLNTQITNAAEYIARRC 271
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319
+ R+PI+I+A IY+A + ++I TG+++ T++ YK L E + L
Sbjct: 272 KDVGVLAGRSPITIAATVIYMAALIFGNELQPSKIADKTGVSDGTIKTSYKVLYEEKEKL 331
Query: 320 L 320
+
Sbjct: 332 V 332
>gi|402080319|gb|EJT75464.1| transcription initiation factor IIB [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 348
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 16/185 (8%)
Query: 152 ICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211
+ D+A LF+ A L+ +S EA+ + A R RT +EI +V +KEIG+
Sbjct: 145 VLDYARHLFKMVDDAKFLKGKSPEAVIAGCIFIACRANNVGRTFREIHALTSVSKKEIGR 204
Query: 212 YIKILGEALQLSQPINSNSIAVHMP--------------RFCTLLQLNKS--AQVLATHI 255
K L + ++ + N + H R+C L + A+ ++ +
Sbjct: 205 VYKSLEDFVKRNPEATKNGLNAHADEDAKGPTPAEELCIRYCASLGFKSTYTAEKISRRL 264
Query: 256 GEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315
E + R+P+S++AA IY+A L KT EI + G+++ T++ Y+ LL+
Sbjct: 265 AERSSSVADLAGRSPLSVAAACIYMASFLIADPKTTKEIAQTAGVSDGTIKTAYRFLLQA 324
Query: 316 WDDLL 320
D L+
Sbjct: 325 KDQLV 329
>gi|325187852|emb|CCA22395.1| transcription initiation factor IIB putative [Albugo laibachii
Nc14]
Length = 303
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDC-CSATCLRNRSVEALATAALVQAIREAQEPRTLQ 196
+I +++ L L I + A Q++++ T +R E++A A + A R+A RTL+
Sbjct: 116 RIREISETLSLPKIILEVAMQVYQEAERKGTLMRGPEKESMAAAVIFIACRQAGHARTLK 175
Query: 197 EISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
E+ A+ V +K+IGK IL + QL+ + ++ RFC+ L L QV+A +
Sbjct: 176 ELEGASGVMKKKIGKSFLILKK--QLNFDFRQATTTNYVERFCSRLGLPAKTQVIAHDVA 233
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ ++P +++A+ IYL + +++ EI VT + E ++ V KEL
Sbjct: 234 KKAQTLGLTDGKSPTALAASVIYLVAAYTNMKRSIQEISDVTMIAEKNVKTVCKEL 289
>gi|448337251|ref|ZP_21526332.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445626359|gb|ELY79707.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 308
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 4/170 (2%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ V+S+L L I D A QLFR + L+ RSVEA+A A++ A R PRTL +
Sbjct: 131 EVRRVSSVLELSETIRDQACQLFRSAQNEDLLQGRSVEAMAAASVYGACRCNGRPRTLDD 190
Query: 198 ISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
I+ +A V Q + L L L +QP+ ++ +PR + L ++ + A +
Sbjct: 191 ITESARVEQSRVTNAYTTLNTELGLPAQPVTPSAF---VPRLASELDVSDQIRQRARQLA 247
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
E + T P +AA +Y A + + + TQ+++ V ++ VT+R
Sbjct: 248 EASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDVADVANVSVVTVR 297
>gi|68492125|ref|XP_710164.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46431308|gb|EAK90894.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|238879990|gb|EEQ43628.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 346
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 23/205 (11%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I ++ + L D A L++ L+ ++ +++ A ++ R A PRT
Sbjct: 128 AYQKISELCNGYQLPKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRT 187
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQ---------LSQPINSNSIAVH-----MPRFCT 240
L+EI NVP K+I K ++ + ++ S ++S+ H + RFC+
Sbjct: 188 LEEIRALTNVPTKQIAKVTGLIKKIIRSHLNNDDASTSIVDETSSLTTHSAEDLIRRFCS 247
Query: 241 LLQLNKSAQVLATHIGEVVINKC----FCTRRNPISISAAAIYLACQ-LEDKRKTQAEIC 295
L L+ + T E V KC R+P +I+A +I+LA + L D + TQ +I
Sbjct: 248 HLGLS----LAITSASEYVARKCHDLGVLAGRSPTTIAATSIFLAAKSLGDTKLTQQQIR 303
Query: 296 KVTGLTEVTLRKVYKELLENWDDLL 320
TG++ T++ YK L EN DL+
Sbjct: 304 DKTGVSIGTIKNSYKILQENAKDLI 328
>gi|401887732|gb|EJT51711.1| transcription initiation factor IIB [Trichosporon asahii var.
asahii CBS 2479]
Length = 420
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 11/197 (5%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ +I +V + L I + A + + + + + + A ++ A R A R+
Sbjct: 119 AFSRINEVCDSMQLPRSIAERAQHAYVIGDEQSVSKGKHPDTIIAACVLFACRAAGAARS 178
Query: 195 LQEISIAANVPQKEIGKYIK-----ILGEALQ--LSQPIN----SNSIAVHMPRFCTLLQ 243
+E+ A VP+ ++GK ++ E + +SQP S S + RFC L
Sbjct: 179 FREVGKAVKVPKADLGKVFNELRMVVMAEQQRRGISQPQGFSSASESTEGMLGRFCNYLD 238
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L + + HI + K R+P+SI+A ++ C L + T EI V G++E
Sbjct: 239 LGNTIFNASKHIAVTAVKKSCIDGRSPLSIAAGVLFFTCILFENSSTPKEISGVAGVSES 298
Query: 304 TLRKVYKELLENWDDLL 320
T++ + K++ E+ D ++
Sbjct: 299 TIKLITKKIAEDVDKVI 315
>gi|448611149|ref|ZP_21661783.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445743581|gb|ELZ95062.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 288
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 2/188 (1%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
SS + + A+ +I V LGL I D A LF + LR RS+E A A +
Sbjct: 101 SSKRERNQVYAFTEIRRVTGALGLPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYA 160
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQL 244
A R R+++E+ + + E + L L L P+ ++PRF T L L
Sbjct: 161 ACRVGGISRSIEEVCTVSKSTESEHQAAYRALNRELGL--PVAPADPTEYLPRFATKLDL 218
Query: 245 NKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
+ + A ++ +NP ++AA +Y A + D TQ+ V +T VT
Sbjct: 219 GRDVERRAREYVADARDEGLIAGKNPCGVAAACLYTAARDLDVDCTQSAAADVADVTPVT 278
Query: 305 LRKVYKEL 312
LRK Y L
Sbjct: 279 LRKTYVAL 286
>gi|448639408|ref|ZP_21676734.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445762687|gb|EMA13905.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
Length = 322
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 104/188 (55%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + + ++R L RS+E +ATAAL A R A
Sbjct: 135 NLKQALGEIDRMASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATAALYAAARMAG 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + E+ + + + L L QP + ++PRF + L L++ Q
Sbjct: 195 NPRSLDEMARVSRVEKMELTRTYRYIVRELSLEVQPADPEH---YLPRFISDLDLSEETQ 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + ++P+ I+AAA+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 252 RQARDLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRY 311
Query: 310 KELLENWD 317
KELLE D
Sbjct: 312 KELLEAED 319
>gi|55377937|ref|YP_135787.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448658471|ref|ZP_21682871.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55230662|gb|AAV46081.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445761196|gb|EMA12445.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 322
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 104/188 (55%), Gaps = 5/188 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + + ++R L RS+E +ATAAL A R A
Sbjct: 135 NLKQALGEIDRMASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATAALYAAARMAG 194
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L E++ + V + E+ + + + L L QP + ++PRF + L L++ Q
Sbjct: 195 NPRSLDEMARVSRVEKMELTRTYRYIVRELSLEVQPADPEH---YLPRFISDLDLSEETQ 251
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A + E + ++P+ I+AAA+Y A L +++ TQ+++ V ++EVT+R Y
Sbjct: 252 RQARDLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRY 311
Query: 310 KELLENWD 317
KELLE D
Sbjct: 312 KELLEAED 319
>gi|406859255|gb|EKD12323.1| transcription factor TFIIB [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 352
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 127/317 (40%), Gaps = 52/317 (16%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CGSCG V+ +R + A D Q ND DP +
Sbjct: 46 CGSCGLVLGDRIVDTRSEWRTFAND---------------DQGND----DPSRVGDGANP 86
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
S + + + + +S R+ +L+ + S++ L AY +I
Sbjct: 87 LLNGSQLTTSISFQDGNS---------RSRDLMRTQNKSSNDKSTKSLLAAYKEIGAHCD 137
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
+ L + D A LF+ A + +S EA+ + A R+ PRT +EI V
Sbjct: 138 AVNLSKSVSDCAKLLFKKVEDAKAFKGKSQEAIIAGCIFIACRQCAVPRTFREIYALTKV 197
Query: 205 PQKEIGKYIKIL--------GEA------------LQLSQPINSNSIAVHMPRFCTLLQL 244
+K+IG+ K L G A Q + N+ + V R+C+ L L
Sbjct: 198 SKKDIGRTFKALEKFFAQNNGGAQKVVAGVSAEDPYQATTSTNAQDLCV---RYCSQLGL 254
Query: 245 NKSAQV-LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
V ++ + E + R+P+SI+AA I++A L KT EI ++ G+++
Sbjct: 255 PGMKFVRVSQGLAEKMSTVGDLAGRSPLSIAAACIFMASALLGNPKTPKEISQIAGVSDG 314
Query: 304 TLRKVYKELLENWDDLL 320
T+R YK L + + L+
Sbjct: 315 TIRTAYKYLYQERERLI 331
>gi|322369726|ref|ZP_08044289.1| transcription initiation factor IIB [Haladaptatus paucihalophilus
DX253]
gi|320550644|gb|EFW92295.1| transcription initiation factor IIB [Haladaptatus paucihalophilus
DX253]
Length = 352
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 3/190 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I + S LGL + + A L+R + L RS+E +ATA+L A R+
Sbjct: 165 NLKQALGEIQRMGSALGLPEPVRETAGVLYRRAVESDLLPGRSIEGMATASLYAAARQQH 224
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR L + + V + I + + L L L I + ++P+F + L+++ A+
Sbjct: 225 FPRPLTTFADVSRVEKIRIQRAYRYLSRELGLQ--IEPEDPSTYIPQFASTLEISDEAER 282
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + +V N + ++P ++AAA+Y A L +++ TQA + ++ VT+R Y+
Sbjct: 283 TARELLDVAKNTGTHSGKSPAGLAAAALYAATHLTNEQLTQATVSNAADVSMVTIRNRYQ 342
Query: 311 ELLENWDDLL 320
ELLE + + L
Sbjct: 343 ELLEVYAEQL 352
>gi|405121333|gb|AFR96102.1| transcription initiation factor iib [Cryptococcus neoformans var.
grubii H99]
Length = 371
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 13/188 (6%)
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
+ A +++ A ++ ++ A+ A +V A R+A+ RT QE+ A + +KE+G+
Sbjct: 157 ERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCKALKISKKELGQVF 216
Query: 214 KILGEALQLSQPINSNSIAVH------------MPRFCTLLQLNKSAQVLATHIGEVVIN 261
+ +Q S + ++VH + RF L L + + HI +
Sbjct: 217 NQVKSVVQ-SSSAQGSMVSVHGSNNAQESAEGLLGRFANYLDLGNAVFNASKHIAGEAVA 275
Query: 262 KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
K R+P+SI+A +Y C L K T +I + G++E T + + K + DD++
Sbjct: 276 KSAIDGRSPVSIAAGVLYFTCVLLGKSTTAKDISAMGGVSESTTKLITKMVANKLDDVIR 335
Query: 322 SNYTPAVP 329
+ P
Sbjct: 336 PEWKTEYP 343
>gi|345007074|ref|YP_004809926.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322700|gb|AEN07553.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 304
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ + S L L I D A QLFR + LR RS+EA+A A++ A R R L E
Sbjct: 131 EVRRIVSALELSEAIRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLLDE 190
Query: 198 ISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
+S A V + + K L E L L ++P+ S ++ +PR + L+ + A +
Sbjct: 191 VSEMARVEESRVANAYKTLNEELGLPAEPV---SPSMFVPRLASDLECPDETRQRARTLA 247
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
E + T +P +AA +Y A Q + K TQ+++ V +T T+R ++ L
Sbjct: 248 EQAEERGVTTGVHPAGFAAACLYKAGQEQGKWVTQSDVAAVGNVTPTTIRTHHETL 303
>gi|255716964|ref|XP_002554763.1| KLTH0F13200p [Lachancea thermotolerans]
gi|238936146|emb|CAR24326.1| KLTH0F13200p [Lachancea thermotolerans CBS 6340]
Length = 359
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 26/205 (12%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY +I + L + D A + ++ C L+ +S E++ + ++ R A+ R+
Sbjct: 133 AYAKITMMCDAAELPKIVKDCAKEAYKICYEERALKGKSQESIMASVILVGCRRAEVGRS 192
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIA---------------VHMPRFC 239
+EI NV +KEIGK I+ L+ N+N A +PRFC
Sbjct: 193 FKEILSLTNVKKKEIGKTFTIIKSILREK---NANGFANIDTATISSGQTSAETFIPRFC 249
Query: 240 TLL----QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEIC 295
+ L Q+ +A+ A H ++ + ++PI+I+A+AIYLA QL + +++
Sbjct: 250 SHLGLSVQIANAAEYTAKHCKDINV----LAGKSPITIAASAIYLAIQLFKVNISASQVS 305
Query: 296 KVTGLTEVTLRKVYKELLENWDDLL 320
+TE T++ YK L E D ++
Sbjct: 306 HTLQVTEGTIKGGYKILYEFRDKVV 330
>gi|340521242|gb|EGR51477.1| transcription factor [Trichoderma reesei QM6a]
Length = 363
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++AY +I+ + + + ++ + A +F+ ++ + EA+ + A R+ P
Sbjct: 138 MQAYKEIVALCETIHMGANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVP 197
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQ------------LSQPINSNSIAVHMP---- 236
RT +EI +V +KE+G+ K L LQ L+ N + +V
Sbjct: 198 RTFREIFNLTSVSKKEVGRVFKQLQNFLQKIQDTEGEGATGLNTVTNYENTSVGAEDLCG 257
Query: 237 RFCTLLQLNKSAQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 294
R+ + L ++ ++ + E + R+P+S++AA IY+AC L + + A I
Sbjct: 258 RYVSQLGFKNQQKISKISRDLAEQATDISALAGRSPLSVAAACIYMACHLMGEPRPSAPI 317
Query: 295 CKVTGLTEVTLRKVYKELLENWDDLLPSNY 324
K TG+++ T++ YK L D L+ +
Sbjct: 318 AKQTGVSDGTVKTAYKFLFAVRDQLIKKEW 347
>gi|451847728|gb|EMD61035.1| hypothetical protein COCSADRAFT_39743 [Cochliobolus sativus ND90Pr]
Length = 366
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 125/330 (37%), Gaps = 61/330 (18%)
Query: 23 TECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFI 82
T CGSCGRV+A+R + + D Q ND DP
Sbjct: 57 TICGSCGRVLADRIIDTRSEWRTFSNDD---------------QGND----DP------- 90
Query: 83 TAFSAWSLVPSPLF----LRSSHSFS-GQLAELERTFELLSSSTTSTSSSVMMDNLRAYL 137
S +PL L++ F G + R +L + S V AY
Sbjct: 91 ---SRIGDAANPLLHGSQLQTEIGFGDGGM----RVRDLSRAHNKSNHDKVNKALQAAYG 143
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
QI + + + A L++ A + +S +A+ + A R+ + R+ +E
Sbjct: 144 QITALCDSQNISRPTAETAKMLYKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFRE 203
Query: 198 ISIAANVPQKEIGKYIKILGEALQLSQ-----------------------PINSNSIAVH 234
I NV +KE+G+ K+L +Q SQ + S A
Sbjct: 204 IFKMTNVSKKEVGRTFKVLEAFIQKSQNSGPSVAGNGAVIDTVNLLNQKGGTTATSAASL 263
Query: 235 MPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 294
MPR C L L Q++A + V + R+P+SI+ A +YL L + K+ EI
Sbjct: 264 MPRACAKLALGTQVQMVAEECADQVAHYGVAAGRSPLSIAGACLYLVSHLMGQPKSPKEI 323
Query: 295 CKVTGLTEVTLRKVYKELLENWDDLLPSNY 324
+++ T+R YK + D ++ +
Sbjct: 324 GLAVEVSDGTIRTAYKLMHMEQDKIIKDEW 353
>gi|358379756|gb|EHK17435.1| hypothetical protein TRIVIDRAFT_182873 [Trichoderma virens Gv29-8]
Length = 356
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++AY +I+ + + + ++ + A +F+ ++ + EA+ + A R+ P
Sbjct: 132 MQAYKEIVALCETINMGANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVP 191
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQ------------LSQPINSNSIAVHMP---- 236
RT +EI +V +KE+G+ K L LQ L+ N + +V
Sbjct: 192 RTFREIFNLTSVSKKEVGRVFKQLQNFLQKIQVTEGEGATGLNTVTNYENTSVGAEDLCG 251
Query: 237 RFCTLLQLNKSAQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 294
R+ + L ++ ++ + E + R+P+S++AA IY+AC L + + A I
Sbjct: 252 RYVSQLGFKNQQKISKISRDLAEQATDISALAGRSPLSVAAACIYMACHLMGEPRPSAPI 311
Query: 295 CKVTGLTEVTLRKVYKELLENWDDLLPSNY 324
K TG+++ T++ YK L D L+ +
Sbjct: 312 AKQTGVSDGTVKTAYKFLFAYRDTLIKKEW 341
>gi|302692026|ref|XP_003035692.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
gi|300109388|gb|EFJ00790.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
Length = 331
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 3/213 (1%)
Query: 115 ELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSV 174
EL ++T + S + L A+ I L I D A QL++ L+ +
Sbjct: 103 ELQRAATRAQGSRSERNILTAFRDISTRCDQFALPKTISDIAKQLYKRVHDEGVLKGKPQ 162
Query: 175 EALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAV- 233
EA+ A + A R+A PRT +E +V +K +G + + L+ ++N A
Sbjct: 163 EAITAACIFIACRQAHVPRTFREFCDLTHVSKKLLGFCCRTISLTFNLAPGASTNPSAGP 222
Query: 234 --HMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ 291
+PR+ L L Q + I N R+P+SI+ AIY C L K K+
Sbjct: 223 ENILPRYFNQLDLPTYVQSICHDIIVEARNHGIADGRSPVSIAGGAIYFTCHLLGKPKSL 282
Query: 292 AEICKVTGLTEVTLRKVYKELLENWDDLLPSNY 324
EI ++E T++ VYK + + L+ +
Sbjct: 283 REISSAASVSEGTIKLVYKLYYDAKEKLVKEKW 315
>gi|448589388|ref|ZP_21649547.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735816|gb|ELZ87364.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 288
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 7/209 (3%)
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
Q A L R + SS + + A+ +I + S L L I + A LF +
Sbjct: 87 QFARLRRQH-----NRARISSKRERNQVYAFTEIRRLTSALSLPNHIREQACALFESAQN 141
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQP 225
LR RS+E A A + A R A R+++E+ A + E + L L L P
Sbjct: 142 EDLLRGRSLEGFAAACVYAACRVAGIARSVEEVCDVAKATEAEHHAAYRALNRDLGL--P 199
Query: 226 INSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLE 285
+ ++PRF T L L++ + A +NP ++AA +Y A +
Sbjct: 200 VAPTDPTEYIPRFATKLDLDRDVERRAREYVADAHEDGLVAGKNPCGVAAACLYTAARDV 259
Query: 286 DKRKTQAEICKVTGLTEVTLRKVYKELLE 314
TQA+ V +T VTLRK Y EL +
Sbjct: 260 GADCTQADAADVADVTPVTLRKTYVELRD 288
>gi|242780523|ref|XP_002479613.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
gi|218719760|gb|EED19179.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
Length = 328
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 124/330 (37%), Gaps = 60/330 (18%)
Query: 19 GRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQP 78
G T CGSCG V+A+R+ H + + D Q ND DP +
Sbjct: 39 GSHETVCGSCGLVLADREIDIHSEWRTFSND---------------DQNND----DPSR- 78
Query: 79 TGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQ 138
+ S L + L + +G +L R LSS + + + AY +
Sbjct: 79 ---VGETSNILLNGNQLETSIAGGATGAARQLYRAQNKLSSEKNNKAL------MAAYKE 129
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I + + + D A LF+ + +S +A PRT EI
Sbjct: 130 IGALCDGFNIQKIVADTAKYLFKIVDDHKAFKGKSQDA---------------PRTFSEI 174
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH---------------MPRFCTLLQ 243
V +KEIG+ K L E +Q I +I RF T L
Sbjct: 175 FAVTKVSRKEIGRIYKSL-EKFFTAQNIERTAIVGSDAGFKQTTSTKPSDLCERFGTFLG 233
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L+ A + + V R+P+SI AA IY+ L K+ EI V G+++
Sbjct: 234 LDYRTWNAAATLSDKVTKDGDLAGRSPLSIVAACIYMISHLCGVPKSAKEISNVVGVSDG 293
Query: 304 TLRKVYKELLENWDDLLPSNYTPAVPPEKA 333
T+R YK+L D LL ++ V +KA
Sbjct: 294 TIRGAYKQLYAERDRLLTDDFIAKVNGDKA 323
>gi|448416194|ref|ZP_21578628.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445679556|gb|ELZ32019.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 314
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ +AS LGL + D A QLFR L RS+EA+A A++ A R T E
Sbjct: 132 EVRRIASALGLSETVRDQACQLFRSAKHEDLLLGRSIEAIAAASVYGACRCNDSRVTRGE 191
Query: 198 ISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
I+ A V + + K L L L + P+ S+ +PR + L + + + A +
Sbjct: 192 IAERAQVERSRVVNAYKTLNTELGLPANPVTPQSL---IPRLASELVVEDAVRRRALELA 248
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
E+ + R P ++ A +Y+A Q + Q +I +V G T TLR EL
Sbjct: 249 ELAHSSTIANGRQPAGVAGACLYIASQEYGQGLRQTDITEVAGTTAATLRSRRDEL 304
>gi|448376034|ref|ZP_21559318.1| transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|445658052|gb|ELZ10875.1| transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 273
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 9/210 (4%)
Query: 106 QLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCS 165
QLA L R + +T + S+ V + QI + L L D + A +LF +
Sbjct: 70 QLARLRREHDRARIATKADSNQVC-----GFSQIKGLVDRLSLPLDAREQACRLFESAQN 124
Query: 166 ATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQ 224
L RS+E A A + R + PRT+ E+ +A+ E+ + L L +
Sbjct: 125 DGLLPGRSIEGFAAACVYTVARTLEVPRTIDEVVASASATDAELKAAYDAMNRELGLPTG 184
Query: 225 PINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQL 284
PI + ++PRF + L L+ + LA E ++ RNP ++AA +Y+A +
Sbjct: 185 PIEPTT---YIPRFASELDLSTDIERLARSFIERLVANNAIGGRNPCGVAAACLYVAAKR 241
Query: 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ TQ E V + VT+RK + L E
Sbjct: 242 QGCPVTQVEAGSVADVAPVTIRKTAQTLAE 271
>gi|344231613|gb|EGV63495.1| hypothetical protein CANTEDRAFT_114798 [Candida tenuis ATCC 10573]
Length = 344
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 14/186 (7%)
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
D A ++++ LR +S E++ A++ R+A+ PRT +EI NVP+ EIGK
Sbjct: 147 DAAKEVYKLVYEERPLRGKSQESIMAASIFIGCRKAKVPRTFKEIWALTNVPRTEIGKVF 206
Query: 214 KILGEALQLSQPINSNSIAV--------------HMPRFCTLLQLNKSAQVLATHIGEVV 259
KI+ ++ IN + ++ + R+C+ L L A +I
Sbjct: 207 KIMDRIIREKNAINPAAFSLVEDNIQTTQTSAEDLIRRYCSHLGLGTQITNAAEYIARRC 266
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319
R+P +I+A IY+A + ++I TG++E T++ Y+ + E D+L
Sbjct: 267 KELGVLAGRSPTTIAATVIYMANVIFGADLQPSKIADKTGVSEGTIKTSYRVITEQKDEL 326
Query: 320 LPSNYT 325
+T
Sbjct: 327 TNPAWT 332
>gi|169609643|ref|XP_001798240.1| hypothetical protein SNOG_07914 [Phaeosphaeria nodorum SN15]
gi|160701885|gb|EAT84190.2| hypothetical protein SNOG_07914 [Phaeosphaeria nodorum SN15]
Length = 346
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 17/207 (8%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
AY QI + + + A LFR A + +S +A+ + A R + R+
Sbjct: 127 AYSQIATLCDSQNISKPTAETAKLLFRVTDDAKLFKGKSQDAIIAGCIFIACRNHGQQRS 186
Query: 195 LQEISIAANVPQKEIGKYIKILGEALQLSQPIN-SNSIAVH----------------MPR 237
+EI NV +KE+G+ K L LQ +Q + ++S +H MPR
Sbjct: 187 FREIFKMTNVSKKEVGRTFKALEAFLQKNQKVGTASSNLLHDTTNFQTGVTTSAENLMPR 246
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
C L L Q++A V R+P+SI+ A +YL L KT EI
Sbjct: 247 ACNKLGLETYIQLVAEECARTVTEHGIAAGRSPLSIAGAVLYLVSHLMGTPKTPKEIGLA 306
Query: 298 TGLTEVTLRKVYKELLENWDDLLPSNY 324
+++ T+R YK + + ++ ++
Sbjct: 307 VEVSDGTIRTAYKLMHAQANKIIKEDW 333
>gi|433419436|ref|ZP_20405257.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|432199460|gb|ELK55634.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
Length = 343
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 5/196 (2%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ +AS L L + D A QLFR + LR RS+EA+A A++ A R R + +
Sbjct: 148 EVRRLASALELSNSVRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLVDD 207
Query: 198 ISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
+S A V + + K L EAL L ++PI S ++ +PR + L+ + A +
Sbjct: 208 VSEMARVAESRVTNAYKTLNEALGLPAEPI---SPSMFVPRLASDLKCPDEIRQRARALA 264
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENW 316
E + T +P +AA +Y A + E + TQ+E V +T T+R + ++L+ +
Sbjct: 265 EQAEERGVTTGVHPAGFAAACLYKAGREEGRWLTQSEAADVANVTTTTIRN-HHDVLQQF 323
Query: 317 DDLLPSNYTPAVPPEK 332
D + ++ E+
Sbjct: 324 DFVQRADRATVAAQER 339
>gi|448568338|ref|ZP_21637915.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448595155|ref|ZP_21653080.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445727288|gb|ELZ78902.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445742912|gb|ELZ94400.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 326
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 5/196 (2%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ +AS L L + D A QLFR + LR RS+EA+A A++ A R R + +
Sbjct: 131 EVRRLASALELSNSVRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLVDD 190
Query: 198 ISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
+S A V + + K L EAL L ++PI S ++ +PR + L+ + A +
Sbjct: 191 VSEMARVAESRVTNAYKTLNEALGLPAEPI---SPSMFVPRLASDLKCPDEIRQRARALA 247
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENW 316
E + T +P +AA +Y A + E + TQ+E V +T T+R + ++L+ +
Sbjct: 248 EQAEERGVTTGVHPAGFAAACLYKAGREEGRWLTQSEAADVANVTTTTIRN-HHDVLQQF 306
Query: 317 DDLLPSNYTPAVPPEK 332
D + ++ E+
Sbjct: 307 DFVQRADRATVAAQER 322
>gi|55376477|ref|YP_134329.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448690641|ref|ZP_21695802.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229202|gb|AAV44623.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445776603|gb|EMA27580.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 320
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 96/184 (52%), Gaps = 3/184 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I +AS LGL + + A L+R L RS+E ++TA+L A R+
Sbjct: 133 NLKQALGEISRMASALGLPESVRETAGVLYRRAVEQNLLPGRSIEGMSTASLYAAARQHG 192
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR L E + + V + I + + L L L I ++P+F + L ++ A+
Sbjct: 193 MPRPLTEFADVSRVEKIRIQRAYRYLSRELGLE--IEPEDPMQYIPQFASSLDVSDEAER 250
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
+ + EV + + ++P ++AAA+Y A L +++ TQ + +V ++ VT+R Y+
Sbjct: 251 RSRELLEVATDNAVHSGKSPAGLAAAALYAATHLTNEQLTQETVSEVAHVSRVTIRNRYQ 310
Query: 311 ELLE 314
ELLE
Sbjct: 311 ELLE 314
>gi|448728406|ref|ZP_21710734.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
gi|445796888|gb|EMA47373.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
Length = 335
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 98/184 (53%), Gaps = 3/184 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I + S LG+ D+ + A ++R + L RS+E ++TAAL IR+
Sbjct: 139 NLKQALGEIERMGSALGVPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAGIRQMG 198
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR++++++ + V + E + + + + L L I ++ RF + L ++ +
Sbjct: 199 LPRSVEDVAAVSRVDEMEFKRAYRYINQELGLE--IGPPDPQQYVSRFASDLDVSDETER 256
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + + + ++P+ ++ AA+Y A L +++ TQ E+ +V G++ VT+R Y
Sbjct: 257 RARDLLRTAQEQAAHSGKSPVGLAGAALYAAGILTNRQLTQDEVSEVAGVSNVTIRNRYH 316
Query: 311 ELLE 314
ELLE
Sbjct: 317 ELLE 320
>gi|302922832|ref|XP_003053548.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734489|gb|EEU47835.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 347
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 25/216 (11%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++AY +I+ + + + ++ + A +F+ L+ + EA+ + A R+ P
Sbjct: 124 MQAYKEIVSLCEAINMGQNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVP 183
Query: 193 RTLQEISIAANVPQKEIGKYIKIL-----------GEALQLSQPINSNSIAVHMPRFCTL 241
RT +EI +V +KE+G+ K L GEA L+ N + +V C
Sbjct: 184 RTFREIFNLTSVSKKEVGRVFKQLQSFLQKLQGQDGEATGLNAVTNYENTSVGAEDLCGR 243
Query: 242 L----------QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ 291
+++K ++ LA E+ R+P+S++AA IY+AC L + +
Sbjct: 244 YVSQLGFKNQQKISKISRDLAEQANEISA----LAGRSPLSVAAACIYMACHLVGEPRPS 299
Query: 292 AEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPA 327
I K G+++ T++ YK L + L+ + A
Sbjct: 300 LPIAKQAGVSDGTVKTAYKHLFAAREQLIKKEWLEA 335
>gi|448418737|ref|ZP_21579914.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
gi|445676131|gb|ELZ28655.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
Length = 335
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 102/191 (53%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +D +AS LGL + + A ++R A LR RS+E +A+A+L R+
Sbjct: 148 NLKHALGEVDRMASALGLPEAVRETASVVYRQALDADLLRGRSIEGVASASLYAGARQMG 207
Query: 191 EPRTLQEISIAANVPQKEIGK---YI-KILGEALQLSQPINSNSIAVHMPRFCTLLQLNK 246
PR+L E++ + V + I + YI + LG ++L+ P ++ RF + L +
Sbjct: 208 TPRSLSEVTTVSRVEKLRIQRAYSYIAQELGLGVELADP------HTYVTRFVSDLDVTH 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ + + + + + ++P+ ++AAA+Y A +L ++R TQ + T ++ VT+R
Sbjct: 262 EVEQIGHELLDAGNAQNVHSGKSPVGLAAAAVYAASRLANQRVTQETVAATTDVSMVTIR 321
Query: 307 KVYKELLENWD 317
Y+ELL ++
Sbjct: 322 NRYQELLTAYE 332
>gi|154292104|ref|XP_001546629.1| hypothetical protein BC1G_14861 [Botryotinia fuckeliana B05.10]
Length = 348
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 29/213 (13%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L AY +I + + ++ D A LF+ A + +S EA+ + A R+ P
Sbjct: 123 LAAYKEIGAHCDAVNIPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCGVP 182
Query: 193 RTLQEISIAANVPQKEIGKYIKILG-----------------------EALQLSQPINSN 229
RT +EI V +K+IG+ K L + Q + N+
Sbjct: 183 RTFREIYALTKVSKKDIGRTFKALEKFFASDSSAKKATADATGALAAPDGYQTTTSTNAK 242
Query: 230 SIAVHMPRFCTLLQLNKSAQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK 287
+ R+C+ L L KS Q ++ + E V R+P+S++AA IY+A L K
Sbjct: 243 DLCT---RYCSQLGL-KSQQFVKISQGLAEKVSTVGDLAGRSPLSVAAACIYMASALLGK 298
Query: 288 RKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
K+ EI +V G+++ T+R YK L + + L+
Sbjct: 299 PKSAKEISQVAGVSDGTIRTAYKYLYADREKLI 331
>gi|452989000|gb|EME88755.1| hypothetical protein MYCFIDRAFT_159927 [Pseudocercospora fijiensis
CIRAD86]
Length = 362
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 32/216 (14%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L+AY QI + L + D A +F+D + + +S EAL + A R
Sbjct: 133 LQAYKQIGALCDGWQLPNSVSDTAKHIFKDADESRLFKGKSQEALIAGCVFLACRRNNVA 192
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHM----------------- 235
R+ +E+ V +KEIG+ K+L L + S A M
Sbjct: 193 RSFREVMELTKVSKKEIGRTFKLLENFLMNKEKDKGASGATSMVAGGTVVYNEQYKGSTS 252
Query: 236 -------PRFCTLLQLNKS----AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQL 284
RFC+ L +++ A LAT +G + R+P+S +AA IY+A QL
Sbjct: 253 SDPADLCQRFCSQLDMDQRTTNMAIALATRMGVTGV----LAGRSPLSSAAACIYMAGQL 308
Query: 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
+ K EI V +++ T+R YK L D L+
Sbjct: 309 MGQAKNPKEIQAVAKVSDSTIRHAYKLLYLEKDKLI 344
>gi|448407123|ref|ZP_21573550.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445676336|gb|ELZ28859.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 288
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 81/195 (41%), Gaps = 4/195 (2%)
Query: 122 TSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAA 181
T S + + + +I + S LGL I D A LF LR RS+E A A
Sbjct: 96 TKIGSKAERNQVYGFTEIRRLVSALGLSDHIRDRACVLFESAQDEDLLRGRSLEGFAAAT 155
Query: 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCT 240
+ R A+ RT+ E+ A + E+ L L L + PI+ A ++ RF +
Sbjct: 156 VYATCRTAEVSRTIDEVVADARASKAELSAAYDALNRDLGLPTGPIDP---AEYLARFAS 212
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L + + A + E RNP ++A +Y A TQAE +
Sbjct: 213 DLDLPQGLEGRARELVERTRELNHVDGRNPAGVAAGCLYTAADERSYPLTQAEAADAADV 272
Query: 301 TEVTLRKVYKELLEN 315
T VTLR Y+ L +
Sbjct: 273 TPVTLRATYQALTDG 287
>gi|448310263|ref|ZP_21500109.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445608424|gb|ELY62275.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
Length = 354
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 89/157 (56%), Gaps = 4/157 (2%)
Query: 159 LFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGE 218
++R L RS+E +ATA+L + R+A PR+L EIS + V + E+ + + +
Sbjct: 194 IYRRALEEDLLPGRSIEGVATASLYASARQAGTPRSLDEISAVSRVEKDEVARTYRYVIR 253
Query: 219 ALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAA 277
L L +P + S ++PRF + L+L+ + A + ++ + ++P+ ++AAA
Sbjct: 254 ELGLEVKPADPES---YVPRFASDLELSDETERRARSLLSTAKDRGIHSGKSPVGLAAAA 310
Query: 278 IYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+Y A L +++ TQ ++ +V ++EVT+R Y ELLE
Sbjct: 311 VYAAALLTNEKVTQNDVSEVASISEVTIRNRYHELLE 347
>gi|429217323|ref|YP_007175313.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Caldisphaera lagunensis DSM
15908]
gi|429133852|gb|AFZ70864.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Caldisphaera lagunensis DSM
15908]
Length = 317
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 11/227 (4%)
Query: 95 LFLRSSHSFSGQ-LAELERTFELLS---SSTTSTSSSVMMDNLRAYLQIID-VASILGLD 149
+++ S H SG+ + L R ++L S + S + N+ L+I+D +A+ + L
Sbjct: 84 VYIGSFHEGSGKKIRGLSRRIDMLRLQRSFRMGRTLSSLEKNINQALKILDELATHMELS 143
Query: 150 YDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI----SIAANVP 205
+ + A +++RD R RS+E++ A L A R+ + P T+ EI SI N
Sbjct: 144 NKVREEASKMYRDATQKGLTRGRSIESVVAATLYAACRKLRIPCTIDEIAKHLSIKDNDV 203
Query: 206 QKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFC 265
++EI + ++L L++ P+ + V+ R + L L V A I K
Sbjct: 204 KREIARCYRLLVRDLEVDIPVIEPELFVN--RIVSALGLPDYVAVEAIKILREARGKGTT 261
Query: 266 TRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
++P ++AAA+YLA R+TQ E+ V G+TEVT+R YKE+
Sbjct: 262 AGKDPSGLAAAAVYLAALKHGLRRTQKEVAHVAGVTEVTVRNRYKEI 308
>gi|336253520|ref|YP_004596627.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335337509|gb|AEH36748.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 332
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 13/308 (4%)
Query: 15 TTSTGRSI-TECGSC-GRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVD 72
T S RSI C C GR++ + + H + L L +L P+ + D D
Sbjct: 26 TESAERSIRATCPECSGRIVHDAEHGEHA-----CAECGLVLDADELDYGPEWRAGDDED 80
Query: 73 EDPFQPTGF-ITAFSAWSLVPSPLFLRSSHSFSGQLAELERT--FELLSSSTTSTSSSVM 129
D + G +T + + + R+ ++ +L+ +R+ L + + T+ +
Sbjct: 81 ADERRRVGAPLTERRHDKGLSTTIGWRNQDAYGNELSARKRSQLRRLRTWNERFTAKTAQ 140
Query: 130 MDNLR-AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIRE 188
NL+ A+ ++ +AS L L + A L+R L RS+EA+ATA L A R+
Sbjct: 141 ERNLKHAFGELERMASALDLPEPCRETAAVLYRRAVDEELLPGRSIEAMATACLYAAARQ 200
Query: 189 AQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSA 248
PRT + V + + + L L L I ++ +F + L ++ A
Sbjct: 201 HGTPRTWATFESVSRVEIGRVQRAYRYLSRELGLE--IAPADPLQYLGQFASALSISDEA 258
Query: 249 QVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV 308
+ +A I E K ++P ++A+AIY A +L ++R TQ I + TG++E T+R
Sbjct: 259 EHVAREILETAKEKGIHVGKSPAGLAASAIYAAARLTNERVTQKTIDEQTGVSEFTIRNR 318
Query: 309 YKELLENW 316
Y+ELL+ +
Sbjct: 319 YQELLDAY 326
>gi|363752235|ref|XP_003646334.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889969|gb|AET39517.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
Length = 354
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 20/183 (10%)
Query: 154 DHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYI 213
D A + ++ C L+ +S E++ + ++ R A+ R+ +EI NV +KEIGK +
Sbjct: 152 DCAKEAYKLCFEERALKGKSQESIMASVILLGCRRAEVGRSFKEILSLTNVRKKEIGKTL 211
Query: 214 KILGEALQLSQP-----INSNSIAV-------HMPRFCTLL----QLNKSAQVLATHIGE 257
I+ + L+ I++ +I+ +PRFC+ L Q+ +A+ +A H +
Sbjct: 212 NIIKKILREKNDRGFVNIDTANISTGQTSAETFIPRFCSHLGLSVQVANAAEYIAKHAKD 271
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ + R+PI+I+A+AIY+A L T A+I +TE T++ YK L E+ +
Sbjct: 272 INV----LAGRSPITIAASAIYMANLLFKFNITPAQISSTLQVTEGTVKGGYKVLYEHKE 327
Query: 318 DLL 320
++
Sbjct: 328 KVV 330
>gi|448418757|ref|ZP_21579934.1| transcription initiation factor IIB [Halosarcina pallida JCM 14848]
gi|445676151|gb|ELZ28675.1| transcription initiation factor IIB [Halosarcina pallida JCM 14848]
Length = 352
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 3/190 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I + S LGL + + A L+R + L RS+E +ATA+L A R+
Sbjct: 165 NLKQALGEIQRMGSALGLPEPVRETAGVLYRRAVESDLLPGRSIEGMATASLYAAARQQH 224
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR L + + V + I + + L L L I + ++P+F + L+++ A+
Sbjct: 225 FPRPLTTFADISRVEKIRIQRAYRYLSRELGLQ--IEPEDPSTYIPQFASTLEISDEAER 282
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + +V N + ++P ++AAA+Y A L +++ TQA + ++ VT+R Y+
Sbjct: 283 TARELLDVAKNTGTHSGKSPAGLAAAALYAATHLTNEQLTQATVSNAADVSMVTIRNRYQ 342
Query: 311 ELLENWDDLL 320
ELLE + + L
Sbjct: 343 ELLEVYAEQL 352
>gi|448726818|ref|ZP_21709208.1| transcription initiation factor TFB 7 [Halococcus morrhuae DSM
1307]
gi|445793379|gb|EMA43957.1| transcription initiation factor TFB 7 [Halococcus morrhuae DSM
1307]
Length = 202
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 80/191 (41%), Gaps = 4/191 (2%)
Query: 125 SSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQ 184
SS + + + ++ + LGL I D A LF + LR RS+E A AA+
Sbjct: 15 SSRAERNRVYGFTEVRRMVGALGLPDSIRDRACVLFESAQNEDLLRGRSLEGFAAAAVYA 74
Query: 185 AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQ 243
R RTL EI A + E+ L L L + PI+ ++ RF L+
Sbjct: 75 VCRTDALSRTLAEIGAVAKATRDELTAAYDALNRELGLPTGPIDPEE---YLARFANQLE 131
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L + A + E RNP ++AA +Y A D TQ V G+T V
Sbjct: 132 LPNGIERRARALVEKSHELGLTNGRNPSGVAAACLYTAATEHDHALTQQSAADVAGVTSV 191
Query: 304 TLRKVYKELLE 314
TLR Y +L E
Sbjct: 192 TLRTTYYDLRE 202
>gi|448321391|ref|ZP_21510871.1| transcription factor TFIIB cyclin-like protein [Natronococcus
amylolyticus DSM 10524]
gi|445604251|gb|ELY58202.1| transcription factor TFIIB cyclin-like protein [Natronococcus
amylolyticus DSM 10524]
Length = 325
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 110/196 (56%), Gaps = 11/196 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LGL ++ + A ++R L RS+E +ATAAL A R+A
Sbjct: 136 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAG 195
Query: 191 EPRTLQEISIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNK 246
PR+L EIS + V + E+ + I+ LG +Q + P + ++PRF + L L+
Sbjct: 196 TPRSLDEISAVSRVDKMELTRTYRYVIRELGLEVQPADPEH------YVPRFVSDLDLSD 249
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ +A + E + + ++P+ ++AAA+Y A L +++ TQ ++ +V ++EVT+R
Sbjct: 250 ETERMARDLLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIR 309
Query: 307 KVYKELLENWDDLLPS 322
YKELLE D P+
Sbjct: 310 NRYKELLEASDSAAPA 325
>gi|347835786|emb|CCD50358.1| similar to transcription initiation factor iib [Botryotinia
fuckeliana]
Length = 350
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 29/213 (13%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L AY +I + + ++ D A LF+ A + +S EA+ + A R+ P
Sbjct: 124 LAAYKEIGAHCDAVNIPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCGVP 183
Query: 193 RTLQEISIAANVPQKEIGKYIKILG-----------------------EALQLSQPINSN 229
RT +EI V +K+IG+ K L + Q + N+
Sbjct: 184 RTFREIYALTKVSKKDIGRTFKALEKFFASDSSAKKATADATGALAAPDGYQTTTSTNAK 243
Query: 230 SIAVHMPRFCTLLQLNKSAQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK 287
+ R+C+ L L KS Q ++ + E V R+P+S++AA IY+A L K
Sbjct: 244 DLCT---RYCSQLGL-KSQQFVKISQGLAEKVSTVGDLAGRSPLSVAAACIYMASALLGK 299
Query: 288 RKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320
K+ EI +V G+++ T+R YK L + + L+
Sbjct: 300 PKSAKEISQVAGVSDGTIRTAYKYLYADREKLI 332
>gi|55376520|ref|YP_134372.1| transcription initiation factor IIB 5 [Haloarcula marismortui ATCC
43049]
gi|55229245|gb|AAV44666.1| transcription initiation factor IIB 5 [Haloarcula marismortui ATCC
43049]
Length = 310
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ +AS L L I D A QLFR S LR RS+EA+ A++ R Q P L++
Sbjct: 135 EVRRLASALELSESIRDQACQLFRSAQSEDLLRGRSIEAIGAASIYGTCRCNQHPLLLED 194
Query: 198 ISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
+ AA V + + L L+L + P+ S +PR + L+L+ + A +
Sbjct: 195 VVDAARVESARVTNAYRTLNRELELPAPPMRPTSF---IPRLISALELDHDIRRRANELA 251
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
E P ++AA +YLA Q + TQ+ + ++ VTLR EL
Sbjct: 252 ERAEGTTLTNGCQPSGVAAACVYLAAQEQGALITQSTVASAAEVSVVTLRSRRDEL 307
>gi|444707176|gb|ELW48465.1| Transcription initiation factor IIB [Tupaia chinensis]
Length = 218
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%)
Query: 235 MPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 294
M FC+ L L K Q+ ATHI + R+PIS + AAIY+A Q +++TQ EI
Sbjct: 117 MSTFCSNLCLPKQVQMTATHIAHKAVELDLVPGRSPISTAEAAIYMASQASAEKRTQKEI 176
Query: 295 CKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+ G+ +VT+R+ Y+ + L P+++T P +K
Sbjct: 177 GDIAGVADVTIRQSYRLIYPRAPYLFPTDFTFDTPVDK 214
>gi|345007304|ref|YP_004810156.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322930|gb|AEN07783.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 308
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ ++S L L + D A +LFR + LR RS+EA+A A++ A R PRTL E
Sbjct: 131 EVRRISSALELSETLRDQACRLFRSAQNEDFLRGRSIEAMAAASIYGACRCNGRPRTLNE 190
Query: 198 ISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
++ +A V I L L L +QP+ ++ +PR + L ++ + A +
Sbjct: 191 VTDSARVEDSRITNAYTTLNTELGLPAQPVTPSAF---VPRLASELDVSDQLRQRARRLA 247
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
E T P +AA +Y A + + +R TQ+++ +V ++ VT+R
Sbjct: 248 EASEATGATTGVRPSGFAAACLYKAGREQGRRLTQSDVAEVANVSPVTVR 297
>gi|448680963|ref|ZP_21691109.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445768021|gb|EMA19108.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 339
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 3/201 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID + S LG+ + A ++R L RS+E +ATAAL AIR+A
Sbjct: 136 NLKQALGEIDRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQAN 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
P+TL ++++ + V + E + + L L L + A ++ +F + L + + +
Sbjct: 196 LPQTLDDMAVVSRVDEMEFTRAYRYLNRELSLQ--VGPPDPATYLSKFISELGADDALER 253
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A + E + ++P+ ++AAAIY A L + TQ + + T ++ VT+R+ Y+
Sbjct: 254 QARALIEAGKEANVHSGKSPVGLAAAAIYAAGLLLGEEMTQETVSEATDISTVTIRERYR 313
Query: 311 ELLENWDDLLPSNYTPAVPPE 331
ELLE +L S PE
Sbjct: 314 ELLEAEAELDDSAVDATSGPE 334
>gi|380487909|emb|CCF37735.1| transcription factor TFIIB [Colletotrichum higginsianum]
Length = 351
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 125/319 (39%), Gaps = 48/319 (15%)
Query: 25 CGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFITA 84
CGSCG V+ ER + A D Q ND DP + +
Sbjct: 49 CGSCGLVVGERIIDTRSEWRTFAND---------------DQGND----DPSRVGDAVNP 89
Query: 85 FSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVAS 144
S + + + S QLA L+ S S S+M +AY +I
Sbjct: 90 LLNGSQLETTIAFGDGRD-SKQLARLQN-----KSQNDKASKSLM----QAYKEIGAFCD 139
Query: 145 ILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 204
+ L ++ D A +F+ ++ + EA+ + A R+ RT +EI +V
Sbjct: 140 SINLGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVTHV 199
Query: 205 PQKEIGKYIKILGEALQLSQPIN-----------------SNSIAVHMPRFCTLLQLNKS 247
+KEIG+ K L LQ + N S S RFC+ L +
Sbjct: 200 SKKEIGRVFKQLESFLQKIKEENPRGAGSLSNLDGYKASASTSAEDLCTRFCSNLNFRNA 259
Query: 248 AQV--LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
++ ++ + + R+P+S++ A IY+A L + +T EI V G+++ T+
Sbjct: 260 QKIENVSRALARKTSSVSELAGRSPLSVAXACIYMASHLMKEVRTSKEIASVAGVSDGTI 319
Query: 306 RKVYKELLENWDDLLPSNY 324
+ Y+ L + D L+ +
Sbjct: 320 KTAYRFLYQARDRLIEKEW 338
>gi|302349045|ref|YP_003816683.1| transcription initiation factor IIB [Acidilobus saccharovorans
345-15]
gi|302329457|gb|ADL19652.1| Transcription initiation factor IIB [Acidilobus saccharovorans
345-15]
Length = 318
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 15/230 (6%)
Query: 95 LFLRSSHSFSGQ-LAELERTFE---LLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLD 149
++L H SG+ + L R E L S + S + N+ L+I+D +A+ + L
Sbjct: 84 VYLSGFHEGSGKRIRGLSRRIENLRLQRSFKMGRTLSGIEKNINQALKILDEIATRMELP 143
Query: 150 YDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQK-- 207
+ + A +L+RD R RS+E++ A L A R+ + P T+ +I A N+P K
Sbjct: 144 DRVKEEASKLYRDATEKGLTRGRSIESVVAATLYAACRKLKIPCTIDDI--AKNLPSKSA 201
Query: 208 ----EIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKC 263
E+ + ++L L + P+ + + R + L L + A I NK
Sbjct: 202 DTKREVARCYRLLVRDLGVDIPVIEPEL--FISRIVSALGLPDYITIEAAKILREARNKG 259
Query: 264 FCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELL 313
++P ++AAA+YLA R+TQ EI V G+TEVT+R YKEL+
Sbjct: 260 VTAGKDPSGLAAAAVYLAALKNGLRRTQKEIAHVAGVTEVTVRNRYKELV 309
>gi|448633189|ref|ZP_21674096.1| transcription initiation factor IIB 5 [Haloarcula vallismortis ATCC
29715]
gi|445752153|gb|EMA03581.1| transcription initiation factor IIB 5 [Haloarcula vallismortis ATCC
29715]
Length = 306
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ +AS L L + D A Q FR S LR RS+EA+A A++ R Q P L++
Sbjct: 131 EVRRLASTLELSESVRDQACQFFRSAQSEDLLRGRSIEAIAAASVYGTCRCNQRPLLLED 190
Query: 198 ISIAANVPQKEIGKYIKILGEALQL-SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIG 256
I AA V + + L L+L + P+ S +PR + L+L+ Q A +
Sbjct: 191 IVDAARVESSRVTNAYRTLNRELKLPTPPMRPTSF---IPRLISELELDHDIQRRANELA 247
Query: 257 EVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
P ++AA +YLA Q + TQ+ + ++ VTLR EL
Sbjct: 248 ACAEETALTNGCQPTGVAAACVYLAAQEQGALITQSTVASAAEVSVVTLRSRRDEL 303
>gi|222476043|ref|YP_002564564.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|345007208|ref|YP_004810060.1| Cyclin domain-containing protein [halophilic archaeon DL31]
gi|354612343|ref|ZP_09030294.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
gi|222454414|gb|ACM58678.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|344322834|gb|AEN07687.1| Cyclin domain protein [halophilic archaeon DL31]
gi|353191188|gb|EHB56696.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
Length = 331
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQE 197
++ +AS L L I D A QLFR + LR RS+EA+ATA++ A R P L E
Sbjct: 148 EVRRLASTLELSDSIRDQACQLFRSAQNEDLLRGRSIEAIATASVYGACRCNDRPVILDE 207
Query: 198 ISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
++ +A V + K L L L P +PRF + L + + + A + +
Sbjct: 208 VADSARVELSRVRNAYKTLNTELGLPTP--PRRPQSFIPRFASELDVADTVRQRAFELAK 265
Query: 258 -----VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
++ N C P ++AA +Y A + + + TQ ++ +V T VT+R + EL
Sbjct: 266 GAEATIISNGC-----QPTGVAAACLYKAAREQGQFFTQTDLAEVAETTPVTIRTRWNEL 320
Query: 313 LE 314
E
Sbjct: 321 EE 322
>gi|115465251|ref|NP_001056225.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|57863857|gb|AAW56898.1| putative transcription initiation factor TFIIB [Oryza sativa
Japonica Group]
gi|113579776|dbj|BAF18139.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|215741580|dbj|BAG98075.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 12/189 (6%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCL---RNRSVEALATAALVQAIREAQE 191
A+ I D+A LGL I D A ++F+ A R R+ +A+ A L A R
Sbjct: 119 AFRGIADMADRLGLVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGM 178
Query: 192 PRTLQEI-SIAAN--VPQKEIGKYIKILGEALQLSQPINSNSIAV-----HMPRFCTLLQ 243
PRT +E+ S+ A +KEIG+ ++ + L + I V ++ RFC+ L
Sbjct: 179 PRTYKELASVTAEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLG 238
Query: 244 LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 303
L V A + + RRNP SI+AA IY+ Q K+ ++ TG+ E
Sbjct: 239 LGHQ-DVRAAGDAVRRLEERLDVRRNPESIAAAIIYMVVQRAGGSKSVRDVSTATGVAEG 297
Query: 304 TLRKVYKEL 312
T+ +KEL
Sbjct: 298 TITAAHKEL 306
>gi|386874567|ref|ZP_10116805.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807600|gb|EIJ66981.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 315
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 4/205 (1%)
Query: 110 LERTFELLSSSTTSTSSSVMMD-NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSAT 167
++ T E L + + + + D NLR L ++ + L L + + A ++R
Sbjct: 100 MKSTIERLRTWDSRSKVNASSDRNLRQALSELATLKDKLSLSDPVIEKAAYVYRKALEKG 159
Query: 168 CLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPIN 227
++ RS+ AL +AL A R+ + PRTL+++S A N+ +K+I + +IL + L L P+
Sbjct: 160 LVKGRSISALIASALYAACRDTETPRTLKDVSDAGNIKRKDIARCYRILHKELDLKMPVV 219
Query: 228 SNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK 287
V R + +Q+++ + A + + ++P+ ++AAA+YLAC +
Sbjct: 220 DPVQCV--SRIASKVQISERTKRYAVKVLKDAQEHEESAGKDPMGLAAAALYLACVRNGE 277
Query: 288 RKTQAEICKVTGLTEVTLRKVYKEL 312
+TQ +I + +TEVT+R YK L
Sbjct: 278 DRTQRDIAEAANVTEVTIRNRYKGL 302
>gi|146304496|ref|YP_001191812.1| transcription initiation factor IIB [Metallosphaera sedula DSM
5348]
gi|145702746|gb|ABP95888.1| Transcription initiation factor IIB (TFIIB) [Metallosphaera sedula
DSM 5348]
Length = 294
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 4/189 (2%)
Query: 133 LRAYLQIIDV-ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQE 191
L YL I++ AS LGL + + A + + + R AL A L R +
Sbjct: 101 LVTYLSILNSEASKLGLPGYVKETAAGVIKKLIESGLARRIDTYALIAATLFYVSRLYKI 160
Query: 192 PRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN---SIAVHMPRFCTLLQLNKSA 248
P L EI N+ K + +Q S +++ S H+P +L
Sbjct: 161 PLQLNEIKKLFNIDSSAFWKASTRVQNVIQKSTFMSNFGGPSPLEHIPDIVNRAKLPPHV 220
Query: 249 QVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV 308
+ +A I ++I + + +S++AAA+YLA + D +KTQ E+ +V +TEVT+R
Sbjct: 221 ETMAAEIASILIKNAITSGKGHLSVAAAAVYLASTILDHKKTQKELAEVLNITEVTIRNR 280
Query: 309 YKELLENWD 317
YKE++ + D
Sbjct: 281 YKEIVNSLD 289
>gi|301098814|ref|XP_002898499.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
gi|262104924|gb|EEY62976.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
Length = 308
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 3/180 (1%)
Query: 134 RAYLQIIDVASILGLDYDICDHAFQLFRDC-CSATCLRNRSVEALATAALVQAIREAQEP 192
R +I +VA L L I + A ++ + +R E++A A L A R+A
Sbjct: 117 RNMARIQEVADYLSLPKKIVEIALDVYAEAEKQGVNMRGPERESMAVAVLFIACRKAGNA 176
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
R+L+E A+ +P++ IGK L L L + + ++ RFC+ L L Q++A
Sbjct: 177 RSLKEFEEASGIPKRRIGKSFMSLQRRLDLE--VKQATTEEYVQRFCSRLGLPNKTQMIA 234
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
+ + + + P++++A+ IYL + +++ EI VT + E ++++V KEL
Sbjct: 235 HTVAKKADSLELSNGQPPVAVAASVIYLVAAYTNAKRSIQEISDVTMIGEKSMKRVCKEL 294
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,782,492,111
Number of Sequences: 23463169
Number of extensions: 323474906
Number of successful extensions: 1064231
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 471
Number of HSP's that attempted gapping in prelim test: 1060330
Number of HSP's gapped (non-prelim): 2447
length of query: 510
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 363
effective length of database: 8,910,109,524
effective search space: 3234369757212
effective search space used: 3234369757212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)