BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046187
(510 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2
SV=1
Length = 316
Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 119/212 (56%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +++ + L +I D LF+ L+ RS +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITNMSDRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ + ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETN--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLGLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPADFKFDTPVDK 312
>sp|P62916|TF2B_RAT Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b
PE=2 SV=1
Length = 316
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL PS++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDK 312
>sp|P62915|TF2B_MOUSE Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1
SV=1
Length = 316
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL PS++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDK 312
>sp|Q5R886|TF2B_PONAB Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2
SV=1
Length = 316
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 312
>sp|Q4R3J5|TF2B_MACFA Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B
PE=2 SV=1
Length = 316
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 312
>sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1
SV=1
Length = 316
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 312
>sp|Q2KIN8|TF2B_BOVIN Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2
SV=1
Length = 316
Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 117/212 (55%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +A + L +I D LF+ L+ R+ +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++ AAIY+A Q +++TQ EI + G+
Sbjct: 221 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAEAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 312
>sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB OS=Dictyostelium discoideum
GN=gtf2b PE=3 SV=1
Length = 325
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 111/204 (54%), Gaps = 1/204 (0%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L A+ +I +A + L + D A +LFR + RSV+ + AAL A R+
Sbjct: 122 LAAFKEIGRMADHMNLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLS 181
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI+ NVP+KEI + KI+ E + + S RFC+ L+L + A
Sbjct: 182 RTFKEIAALTNVPKKEISRCYKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGA 241
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
H+ ++ ++ ++PIS++AA+IY+ QL +++TQ +I V+G++EVT+R YK+L
Sbjct: 242 EHVSKMAMDMGIVAGKSPISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDL 301
Query: 313 LENWDDLLPSNYTPAVPPEKAFPT 336
D L+PS+ +P + PT
Sbjct: 302 YAKRDQLIPSD-SPYFSQVQYLPT 324
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 138/296 (46%), Gaps = 12/296 (4%)
Query: 24 ECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPTGFIT 83
ECGS R +++ QD L + + + + P+ + D D G
Sbjct: 32 ECGS------PRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRSRVGAPV 85
Query: 84 AFSAWSLVPSPLFLRSSHSFSGQLAELE---RTFELLSSSTTSTSSSVMMDNLRAYLQII 140
++ S + S+ + G+ + + F L S+ NL L +
Sbjct: 86 TYTIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSEL 145
Query: 141 D-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEIS 199
D +AS LGL + + A ++R +R RS+E + AAL A R+A PRTL EI+
Sbjct: 146 DRMASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIA 205
Query: 200 IAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVV 259
+ V +KEIG+ + + L L + S A ++PRFC L L+ Q A I +
Sbjct: 206 TYSRVDRKEIGRTYRFITRELGLK--LMPTSPADYIPRFCAALGLSGEVQKKAIEIIKKA 263
Query: 260 INKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315
+ + R P ++AAA+Y+A L +R+TQ E+ +V G+TEVT+R YKEL E
Sbjct: 264 EERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVTEVTIRNRYKELAEK 319
>sp|P29052|TF2B_DROME Transcription initiation factor IIB OS=Drosophila melanogaster
GN=TfIIB PE=2 SV=1
Length = 315
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 114 ISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 173
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL+ S ++ + A M RFC L L Q A
Sbjct: 174 RTFKEICAVSKISKKEIGRCFKLTLKALETS--VDLITTADFMCRFCANLDLPNMVQRAA 231
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 232 THIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLM 291
Query: 313 LENWDDLLPSNYTPAVP 329
+ L P ++ P
Sbjct: 292 YPHAAKLFPEDFKFTTP 308
>sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB
PE=3 SV=1
Length = 293
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
+ A+ +I +A + L I D A LF+ L+ RS +A A+A L A R+ P
Sbjct: 92 ISAFKEISSMADRINLPKTIVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVP 151
Query: 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLA 252
RT +EI + + +KEIG+ K+ +AL+ S ++ + A M RFC L L Q A
Sbjct: 152 RTFKEICAVSKISKKEIGRCFKLTLKALETS--VDLITTADFMCRFCANLDLPNMVQRAA 209
Query: 253 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312
THI + + R+PIS++AAAIY+A Q + +++Q EI + G+ +VT+R+ YK +
Sbjct: 210 THIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLM 269
Query: 313 LENWDDLLPSNYTPAVP 329
+ L P ++ P
Sbjct: 270 YPHAAKLFPEDFKFTTP 286
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB OS=Caenorhabditis elegans
GN=ttb-1 PE=3 SV=2
Length = 306
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 3/199 (1%)
Query: 139 IIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEI 198
I +++ + L +I D A ++F+D + LR ++ EA A A L A R+ PRT +EI
Sbjct: 111 IREMSERIHLPRNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEI 170
Query: 199 SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEV 258
+ V +KEIG+ KI+ +L+ + + + A M RFC L L S Q AT I +
Sbjct: 171 CAVSRVSKKEIGRCFKIIVRSLETN--LEQITSADFMSRFCGNLSLPNSIQAAATRIAKC 228
Query: 259 VINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318
++ R PISI+AAAIY+A Q ++++ EI V G E+T+R+ YK L +
Sbjct: 229 AVDMDLVAGRTPISIAAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKLLYPKALE 288
Query: 319 LLPSNYTPAVPPEKAFPTT 337
L P ++ V P A P +
Sbjct: 289 LFPKDFR-FVTPIDALPNS 306
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R +R RS+E + A+L A R PRTL EI+ +
Sbjct: 133 SSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEVS 192
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ AQ A I E + K
Sbjct: 193 RVTKKEVGRTYRFLTRELNIKLP--PTSPVDYVPRFASELGLSGEAQSRAIEIIEKAMEK 250
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
+ R P ++AAA+Y+A L +RKTQ ++ + G+TEVT+R YKEL E
Sbjct: 251 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTE 302
>sp|O26971|TF2B_METTH Transcription initiation factor IIB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tfb PE=3 SV=1
Length = 310
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R +R RS+E + A+L A R+ PRTL EI+ +
Sbjct: 133 SSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAEVS 192
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ Q A I E+ +
Sbjct: 193 RVSKKEVGRTYRFLTRELNIKLP--PTSPVDYVPRFASELGLSGEVQSKAIEIIEMAMEN 250
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ R P ++AAA+Y+A L + KTQ ++ +V G+TEVT+R YKEL E D
Sbjct: 251 GLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYKELTEQLD 305
>sp|A3CSQ6|TF2B_METMJ Transcription initiation factor IIB OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=tfb PE=3 SV=1
Length = 337
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ + A ++RD +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIAEVSRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLNLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q A I + + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R
Sbjct: 262 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEKLD 332
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 100/180 (55%), Gaps = 10/180 (5%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+AS LGL ++ + A ++RD +R RS+E +A AAL A R+ PRTL EI+
Sbjct: 156 MASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEV 215
Query: 202 ANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
+ V +KEIG+ + + L L + PI+ ++PRFC+ L L Q A I
Sbjct: 216 SRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLTLKGEVQSRAVEILR 269
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R YKEL E D
Sbjct: 270 QAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKELAEKLD 329
>sp|A7IAR4|TF2B_METB6 Transcription initiation factor IIB OS=Methanoregula boonei (strain
6A8) GN=tfb PE=3 SV=1
Length = 334
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ + A ++RD +R RS+E +A AAL A R+
Sbjct: 145 NLAFALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCS 204
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 205 VPRTLDEIAEVSRVSRKEIGRTYRFISRELGLKLLPTSPID------YVPRFCSGLTLKG 258
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q A I + + R P ++AAAIY++ L +R+TQ E+ +V G+TEVT+R
Sbjct: 259 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 318
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 319 NRYKELAEKLD 329
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 143 ASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202
+S LGL + + A ++R+ +R RS+E + A+L A R + PRTL EI+ +
Sbjct: 134 SSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIADVS 193
Query: 203 NVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK 262
V +KE+G+ + L L + P S ++PRF + L L+ Q A I ++
Sbjct: 194 RVSKKEVGRTYRFLTRELHIRLP--PTSPIDYVPRFASELNLSGVVQSKAIEIINQAMDN 251
Query: 263 CFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317
+ R P ++AAA+Y+A L +RKTQ ++ + G+TEVT+R YKEL E D
Sbjct: 252 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQLD 306
>sp|Q58192|TF2B_METJA Transcription initiation factor IIB OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=tfb PE=3 SV=1
Length = 673
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 122/252 (48%), Gaps = 21/252 (8%)
Query: 81 FITAFSAWSL--------VPSPLFLRSSHSFSGQLAELERT--FELLSSSTTSTSSSVMM 130
F+ F + L + + + R+ S+ L+ +R + L S
Sbjct: 423 FVAGFGGFVLHNTIHDKGLSTVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAE 482
Query: 131 DNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREA 189
NL L +D + S LGL + ++A ++R +R RS+E + AA+ A R
Sbjct: 483 RNLAFALSELDRITSKLGLPRHVRENAAIIYRGAVEKGLIRGRSIEGVVAAAIYAACRRC 542
Query: 190 QEPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLN 245
+ PRTL EI+ A+ V +KEIG+ + L L + + PI+ ++PRF + L L
Sbjct: 543 RVPRTLDEIAEASRVDRKEIGRTYRFLARELNIKLTPTNPID------YVPRFASELGLP 596
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
+ A I + K + R P ++AAAIY+A L R+TQ E+ +V G+TEVT+
Sbjct: 597 GEVESKAIQILQQAAEKGLTSGRGPTGVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTI 656
Query: 306 RKVYKELLENWD 317
R YKEL E+ D
Sbjct: 657 RNRYKELTEHLD 668
>sp|A6UW60|TF2B_META3 Transcription initiation factor IIB OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=tfb PE=3 SV=1
Length = 334
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 107/191 (56%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 145 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 204
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L++ + PI+ ++PRF + L+L
Sbjct: 205 VPRTLDEIAEMSRVDRKEIGRTYRFISRELKIRLAPTSPID------YVPRFASELKLPG 258
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + +K + R P ++AAAIY+A L RKTQ E+ V G+TEVT+R
Sbjct: 259 EVESKAISILQKAGDKGLTSGRGPTGVAAAAIYIASVLHGTRKTQREVADVAGVTEVTIR 318
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 319 NRYKELTEHLD 329
>sp|Q8TX21|TF2B_METKA Transcription initiation factor IIB OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=tfb
PE=3 SV=1
Length = 307
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 3/192 (1%)
Query: 124 TSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALV 183
S S + +A+L++ ++AS L L + + A ++R +R R +E++ AA+
Sbjct: 110 VSGSRERNFFQAFLELENLASKLQLPESVRELAASIYRKAYKEGIVRGRGIESVLGAAVF 169
Query: 184 QAIREAQEPRTLQEISIAANVP-QKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLL 242
A +EA+ PRT +EI+ A V + EI + ++L L L Q S H+PRF + L
Sbjct: 170 AACKEARVPRTAREIAEALGVSDENEILRAYRVLQRRLNLKQKPTEPSD--HLPRFASKL 227
Query: 243 QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 302
++++ Q A I E K + P ++AAA+Y+A LE +R+TQ EI +V +TE
Sbjct: 228 GVSENVQAKAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEIAEVARVTE 287
Query: 303 VTLRKVYKELLE 314
VT+R YKE+ E
Sbjct: 288 VTIRNRYKEICE 299
>sp|Q9P9I7|TF2B_METTL Transcription initiation factor IIB OS=Methanococcus
thermolithotrophicus GN=tfb PE=3 SV=1
Length = 339
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 150 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L + + PI+ ++PRF + L+L
Sbjct: 210 VPRTLDEIAEGSRVDRKEIGRTYRFISRELNIRLTPTNPID------YVPRFASELKLPG 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + K + R P ++AAAIY+A L R+TQ E+ V G+TEVT+R
Sbjct: 264 EVESKAISILQKANEKGLTSGRGPTGVAAAAIYIASVLHGTRRTQREVADVAGVTEVTIR 323
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 324 NRYKELTEHLD 334
>sp|A4G0F2|TF2B_METM5 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=tfb PE=3 SV=1
Length = 339
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 150 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L + + P++ ++PRF + L+L
Sbjct: 210 VPRTLDEIAEVSRVDRKEIGRTYRFISRELNIRLAPTNPVD------YVPRFASELKLPG 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + K + R P ++AAAIY+A L+ R+TQ E+ V G+TEVT+R
Sbjct: 264 EVESKAISILQKAGEKGLTSSRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIR 323
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 324 NRYKELTEHLD 334
>sp|A6VI28|TF2B_METM7 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=tfb PE=3 SV=1
Length = 339
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 150 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L + + P++ ++PRF + L+L
Sbjct: 210 VPRTLDEIAEVSRVDRKEIGRTYRFISRELNIRLAPTNPVD------YVPRFASELKLPG 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + K + R P ++AAAIY+A L+ R+TQ E+ V G+TEVT+R
Sbjct: 264 EVESKAISILQKAGEKGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIR 323
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 324 NRYKELTEHLD 334
>sp|A9A8Q0|TF2B_METM6 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=tfb PE=3 SV=1
Length = 339
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 150 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L + + P++ ++PRF + L+L
Sbjct: 210 VPRTLDEIAEVSRVDRKEIGRTYRFISRELNIRLAPTNPVD------YVPRFASELKLPG 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + K + R P ++AAAIY+A L+ R+TQ E+ V G+TEVT+R
Sbjct: 264 EVESKAISILQKAGEKGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIR 323
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 324 NRYKELTEHLD 334
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ ++ +AS L + D+ + A ++R +R RS+E + AL A R
Sbjct: 123 NLSQALQELERMASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITN 182
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL EI+ V +KEIG+ +I+ L+L+ I + ++ RFC+ L+L+ +
Sbjct: 183 VPRTLGEIASVTRVKKKEIGRTYRIMSRYLKLN--IMPSKAEDYISRFCSKLKLSMDTRN 240
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I N + + P ++AAAIY+A + +R+TQ + +V G+TEVT+R YK
Sbjct: 241 KALEILRSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVAGVTEVTIRNRYK 300
Query: 311 ELLE 314
EL E
Sbjct: 301 ELTE 304
>sp|Q6M176|TF2B_METMP Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain S2 / LL) GN=tfb PE=3 SV=1
Length = 339
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL ++ ++A L+R +R RS+E +A AAL A R +
Sbjct: 150 NLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCK 209
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI+ + V +KEIG+ + + L + + P++ ++PRF + L+L
Sbjct: 210 VPRTLDEIAEVSRVDRKEIGRTYRFISRELNIRLAPTNPVD------YVPRFASELKLPG 263
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
+ A I + + + R P ++AAAIY+A L+ R+TQ E+ V G+TEVT+R
Sbjct: 264 EVESKAISILQKAGERGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIR 323
Query: 307 KVYKELLENWD 317
YKEL E+ D
Sbjct: 324 NRYKELTEHLD 334
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 3/184 (1%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ ++ +A L + D+ + A ++R +R RS+E + AL A R
Sbjct: 123 NLSQALQELERMAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITN 182
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PRTL EI+ V +KEIG+ +I+ L+L+ I + ++ RFC+ L+L+ +
Sbjct: 183 VPRTLGEIASVTRVKKKEIGRTYRIMSRYLKLN--IMPSKAEDYISRFCSKLKLSMDTRN 240
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
A I N + + P ++AAAIY+A + +R+TQ + +V G+TEVT+R YK
Sbjct: 241 KALEILRDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVAGVTEVTIRNRYK 300
Query: 311 ELLE 314
EL E
Sbjct: 301 ELTE 304
>sp|A8AC96|TF2B_IGNH4 Transcription initiation factor IIB OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=tfb PE=3 SV=1
Length = 316
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 105/192 (54%), Gaps = 3/192 (1%)
Query: 129 MMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIR 187
M NL + +D +A++L L I + A ++R +R RS+E++ A + A R
Sbjct: 115 MDRNLTIAMNELDRMANLLNLPKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACR 174
Query: 188 EAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKS 247
+PRTL EI+ V +KE+ + +++ + L+L PI ++++ H+PR L+L
Sbjct: 175 IHHQPRTLDEIAKKLEVNRKEVARCYRLITKELKLKVPI-ADAMD-HIPRIGEALKLRGD 232
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
A I E + ++P I+AA IY+A + +R+TQ EI V G+TEVT+R
Sbjct: 233 IIEYAMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGERRTQKEIANVAGVTEVTVRN 292
Query: 308 VYKELLENWDDL 319
YKE+++ +++
Sbjct: 293 RYKEIMKVLNEM 304
>sp|P48512|TF2B1_ARATH Transcription initiation factor IIB-1 OS=Arabidopsis thaliana
GN=TFIIB1 PE=1 SV=1
Length = 312
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 106/199 (53%), Gaps = 11/199 (5%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++A+ I ++ LGL I D A +L++ R R+ +AL A L A R+ +P
Sbjct: 106 IQAFKTIATMSERLGLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKP 165
Query: 193 RTLQEISIAAN-VPQKEIGK----YIKILGEALQLSQPINSNSIAV--HMPRFCTLLQLN 245
RT++EI + AN +KEIG+ +K LG L+ Q ++ +I M RFC+ L ++
Sbjct: 166 RTIKEICVIANGATKKEIGRAKDYIVKTLG--LEPGQSVDLGTIHAGDFMRRFCSNLAMS 223
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
A A V ++ F RR+PISI+A IY+ QL D +KT +I TG+ E T+
Sbjct: 224 NHAVKAAQEA--VQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTI 281
Query: 306 RKVYKELLENWDDLLPSNY 324
R YK+L + + PS Y
Sbjct: 282 RNSYKDLYPHLSKIAPSWY 300
>sp|Q8SRP3|TF2B_ENCCU Transcription initiation factor IIB OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU06_1100i PE=3 SV=1
Length = 312
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 148 LDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQK 207
L I D A +F++ L+ ++VE + A + A R+ + PRT +EIS+ V ++
Sbjct: 126 LSRTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEISVMTAVQKR 185
Query: 208 EIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTR 267
EIG+ K++ L+ +++ +I + RFC+ L LN Q +AT I +
Sbjct: 186 EIGRCFKLISPHLERMATMSTENI---IARFCSDLNLNIKIQKIATEIAKAAHELGCLAG 242
Query: 268 RNPISISAAAIYLACQLE-DKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSN 323
++P SI+AA IY+ L +++K Q +I VT +TEVT++ YKELL D++P N
Sbjct: 243 KSPDSIAAAVIYMVTNLFPEEKKIQKDIQFVTNVTEVTIKNTYKELLTFKYDIIPEN 299
>sp|P58111|TF2B1_SULSO Transcription initiation factor IIB 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbA
PE=3 SV=1
Length = 309
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
SS+ + +A ++ + ++L L + D A ++R +R RS+E++ AA+ A
Sbjct: 114 SSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAA 173
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R + RTL EI+ +KE+ + ++L L +S P++ ++ R LL L+
Sbjct: 174 CRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVSVPVSDPK--DYVTRIANLLGLS 231
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
+ A I + ++P ++AAAIY+A L D+R+TQ EI +V G+TEVT+
Sbjct: 232 GAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTV 291
Query: 306 RKVYKEL 312
R YKEL
Sbjct: 292 RNRYKEL 298
>sp|Q8W0W3|TF2B_ORYSJ Transcription initiation factor IIB OS=Oryza sativa subsp. japonica
GN=TFIIB PE=1 SV=1
Length = 312
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I ++A LGL I D A ++++ +R R+ +A+ A L A R+ PRT
Sbjct: 108 AFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRT 167
Query: 195 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVH----MPRFCTLLQLN---- 245
++EI S+A +KEIG+ + + + L++ + +H + RFC+ L +N
Sbjct: 168 VKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAV 227
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
K+AQ E+ I RR+PISI+AA IY+ QL D +K +I TG+ E T+
Sbjct: 228 KAAQEAVQRSEELDI------RRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTI 281
Query: 306 RKVYKELLENWDDLLPSNY 324
R YK+L L+P+ Y
Sbjct: 282 RNSYKDLYPYASRLIPNTY 300
>sp|P50387|TF2B_SULSH Transcription initiation factor IIB OS=Sulfolobus shibatae GN=tfb
PE=3 SV=1
Length = 309
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 126 SSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQA 185
SS+ + +A ++ + ++L L + D A ++R +R RS+E++ AA+ A
Sbjct: 114 SSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAA 173
Query: 186 IREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245
R + RTL EI+ +KE+ + ++L L +S P++ ++ R LL L+
Sbjct: 174 CRRMKLARTLDEIAQYTKANRKEVARCYRLLLRELDVSVPVSDPK--DYVTRIANLLGLS 231
Query: 246 KSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305
A I + ++P ++AAAIY+A L D+R+TQ EI +V G+TEVT+
Sbjct: 232 GRVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTV 291
Query: 306 RKVYKEL 312
R YKEL
Sbjct: 292 RNRYKEL 298
>sp|Q9HSF7|TF2B7_HALSA Transcription initiation factor IIB 7 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbG PE=3
SV=1
Length = 323
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +AT+AL A R+
Sbjct: 136 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEG 195
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PR+L+EIS + V +KEIG+ + + + L L +P++ ++PRFC+ L+L + Q
Sbjct: 196 IPRSLEEISEVSRVERKEIGRTYRYISQELGLEMKPVDPKK---YVPRFCSELELTEEVQ 252
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I E + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 253 SKANEIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 312
Query: 310 KELLE 314
+E +E
Sbjct: 313 QEQIE 317
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D +AS L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+EA+ A + A R + PRTL EI+ + V +KEIG+ + + L L+
Sbjct: 147 RGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVDKKEIGRSFRFIARHLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A I E + + ++P + AAA+Y+A +E +++
Sbjct: 207 KPTDYVNKFADELGLSEKVRRRAIEILEEAYQRGLTSGKSPAGLVAAALYIASLMEGEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL+E + +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVEKLNLKVP 298
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2
SV=1
Length = 313
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 107/200 (53%), Gaps = 13/200 (6%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
++A+ I ++ LGL I D A ++++ R R+ +AL A L A R+ +P
Sbjct: 107 IQAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKP 166
Query: 193 RTLQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSI---AVH----MPRFCTLLQL 244
RT++EI S+A +KEIG+ + + + L L N N++ +H M RFC+ L +
Sbjct: 167 RTVKEICSVANGATKKEIGRAKEYIVKQLGLE---NGNAVEMGTIHAGDFMRRFCSNLCM 223
Query: 245 NKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 304
N A A V ++ F RR+PISI+AA IY+ QL D +K +I TG+ E T
Sbjct: 224 NNQAVKAAQEA--VQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGT 281
Query: 305 LRKVYKELLENWDDLLPSNY 324
+R YK+L + ++P+ Y
Sbjct: 282 IRNSYKDLYPHVSKIIPNWY 301
>sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2 OS=Arabidopsis thaliana
GN=TFIIB2 PE=2 SV=1
Length = 312
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 194
A+ I +A LGL I D A ++++ R R+ +AL A L A R+ +PRT
Sbjct: 108 AFKTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
Query: 195 LQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSIAV--HMPRFCTLLQLNKS 247
++EI S+A +KEIG+ +K LG L+ Q + +I M RFC+ L +
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLG--LETGQLVEMGTIHAGDFMRRFCS--NLGMT 223
Query: 248 AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307
Q + V ++ F RR+PISI+AA IY+ QL D++K +I TG+ E T+R
Sbjct: 224 NQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRN 283
Query: 308 VYKELLENWDDLLPSNY 324
YK+L + ++P+ Y
Sbjct: 284 SYKDLYPHLSKIIPAWY 300
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D + + L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EIS A V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYRFIARNLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A I E + + ++P + AAA+Y+A LE +++
Sbjct: 207 KPTDYVNKFADELGLSEKVRRRAIEILEEAYKRGLTSGKSPAGLVAAALYIASLLEGEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL+E +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVEKLGIKVP 298
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 1/212 (0%)
Query: 111 ERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCL 169
E+ + L + S NL L +D + + L L + + A +L+R+ +
Sbjct: 87 EKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEEEAARLYREAVRKGLI 146
Query: 170 RNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSN 229
R RS+E++ A + A R + PRTL EIS A V +KEIG+ + + L L+
Sbjct: 147 RGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYRFIARNLNLTPKKLFV 206
Query: 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289
++ +F L L++ + A I E + + ++P + AAA+Y+A LE +++
Sbjct: 207 KPTDYVNKFADELGLSEKVRRRAIEILEEAYRRGLTSGKSPAGLVAAALYIASLLEGEKR 266
Query: 290 TQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
TQ E+ +V +TEVT+R YKEL+E +P
Sbjct: 267 TQREVAEVARVTEVTVRNRYKELVEKLGIKVP 298
>sp|Q9HJM2|TF2B2_THEAC Transcription initiation factor IIB 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbB PE=3 SV=1
Length = 307
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 107/183 (58%), Gaps = 5/183 (2%)
Query: 132 NLRAYLQII-DVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ++ D+ + LG+ DI + A ++R +R RS+E++ A++ A R+
Sbjct: 118 NLSLALQLLNDIGAKLGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVN 177
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PRTL EIS A+ V +K+IGK + L + L L+ +P S ++ +FC L L+K A
Sbjct: 178 IPRTLDEISKASEVNKKKIGKAYRHLAKELDLNLKPTTPFS---YISQFCNKLDLDKQAI 234
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V++ I ++ + + P I+AAAIY+A K +TQ EI +++G+TEVT+R Y
Sbjct: 235 VISEDIVRQAMSMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRY 294
Query: 310 KEL 312
KE+
Sbjct: 295 KEI 297
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 3/222 (1%)
Query: 101 HSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQL 159
S SG + E + + L + S NL L +D + + L L + + A +L
Sbjct: 79 RSLSGLMRE--KMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPRHVEEEAARL 136
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R+ +R RS+E++ A + A R + PRTL EI+ A V +KEIG+ + +
Sbjct: 137 YREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARN 196
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L L+ ++ +F L L++ + A I + + + ++P + AAA+Y
Sbjct: 197 LNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALY 256
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
+A LE +++TQ E+ +V +TEVT+R YKEL+E +P
Sbjct: 257 IASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKVP 298
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 3/222 (1%)
Query: 101 HSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIID-VASILGLDYDICDHAFQL 159
S SG + E + + L + S NL L +D + + L L + + A +L
Sbjct: 79 RSLSGLMRE--KMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPRHVEEEAARL 136
Query: 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219
+R+ +R RS+E++ A + A R + PRTL EI+ A V +KEIG+ + +
Sbjct: 137 YREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARN 196
Query: 220 LQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIY 279
L L+ ++ +F L L++ + A I + + + ++P + AAA+Y
Sbjct: 197 LNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALY 256
Query: 280 LACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP 321
+A LE +++TQ E+ +V +TEVT+R YKEL+E +P
Sbjct: 257 IASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKVP 298
>sp|O13749|TF2B_SCHPO Transcription initiation factor IIB OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sua7 PE=3 SV=1
Length = 340
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 15/203 (7%)
Query: 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEP 192
L AY +I + + L I D A QL++ L+ +S +++ A + A R+ + P
Sbjct: 119 LTAYKEIGAMCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVP 178
Query: 193 RTLQEISIAANVPQKEIGKYIKILG-------------EALQLSQPINSNSIAVH--MPR 237
RT EI NVP+KEIG+ K L +AL+ + I S+S + M R
Sbjct: 179 RTFMEICTLTNVPKKEIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVR 238
Query: 238 FCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 297
FC L L S Q A + + R+PISI+A+ IY+ L KT EI +V
Sbjct: 239 FCNRLMLPMSVQSAAAELARRAGLQGTLAGRSPISIAASGIYMISALMGYPKTPKEISEV 298
Query: 298 TGLTEVTLRKVYKELLENWDDLL 320
TG+++ T+R YK L +L+
Sbjct: 299 TGVSDSTIRIAYKLLHAERKELI 321
>sp|Q979P7|TF2B2_THEVO Transcription initiation factor IIB 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbB PE=3 SV=1
Length = 313
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 107/183 (58%), Gaps = 5/183 (2%)
Query: 132 NLRAYLQII-DVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL LQ++ D+ + LG+ DI + + ++R +R RS+E++ A++ A R+
Sbjct: 124 NLSLALQLLNDIGAKLGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVN 183
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PRTL EI+ A+ V +K+IGK + L + L L+ +P S ++ +FC L L+K A
Sbjct: 184 IPRTLDEIAKASEVNKKKIGKAYRHLAKELDLNLRPTTPFS---YIAQFCNKLDLDKQAI 240
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
V++ I ++ + + P I+AAAIY+A K +TQ EI +++G+TEVT+R Y
Sbjct: 241 VISEDIVRQAMSMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRY 300
Query: 310 KEL 312
KE+
Sbjct: 301 KEI 303
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 101/184 (54%), Gaps = 3/184 (1%)
Query: 132 NLRAYL-QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L +I +AS LGL ++ + A ++R S L RS+E +ATAAL + R+
Sbjct: 138 NLKQALGEIERMASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLS 197
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQV 250
PR++ E++ + + + E + + + +LS + A ++PRF + L L +
Sbjct: 198 TPRSIDEVANVSRIDEMEFKRTYRYI--VRELSLEVAPADPAQYVPRFASDLDLPDEVER 255
Query: 251 LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310
+ + + ++P+ ++AAAIY + L + + TQ+E+ +VT ++EVT+R Y+
Sbjct: 256 RSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVTDVSEVTIRNRYQ 315
Query: 311 ELLE 314
ELLE
Sbjct: 316 ELLE 319
>sp|A0B5T8|TF2B_METTP Transcription initiation factor IIB OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=tfb PE=3 SV=1
Length = 337
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 96/177 (54%), Gaps = 10/177 (5%)
Query: 142 VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIA 201
+AS LGL ++ + A ++R +R RS+E +A AAL A R+ PRTL EI+
Sbjct: 159 MASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAEV 218
Query: 202 ANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257
+ V +KEIG+ + + L L + PI+ ++PRFC+ L L Q I
Sbjct: 219 SRVSRKEIGRTYRFVSRELSLKLMPTSPID------YIPRFCSGLNLKGDVQAKGIEILR 272
Query: 258 VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314
K + R P ++AAAIY+A L + R+TQ E+ V G+TEVT+R YKEL E
Sbjct: 273 QAAEKELTSGRGPTGVAAAAIYIASILCNDRRTQREVADVAGVTEVTIRNRYKELAE 329
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL+ L ID +AS LG+ + + A ++R +R RS+E +ATA L A R+
Sbjct: 130 NLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEG 189
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLS-QPINSNSIAVHMPRFCTLLQLNKSAQ 249
PRTL+E++ A + QKEIG+ + + + L L QP + ++PRF + L+L++
Sbjct: 190 IPRTLEEVTEVARIDQKEIGRTYRYVAQELSLEIQPTDPKE---YLPRFASDLELSEEVI 246
Query: 250 VLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309
A I + + + ++P +AAAIY A L +++KTQ E+ V +TEVT+R Y
Sbjct: 247 AKAREIIDTSAEQGLLSGKSPSGFAAAAIYAASLLCNEKKTQREVANVANVTEVTIRNRY 306
Query: 310 KELLE 314
+E +E
Sbjct: 307 QEQIE 311
>sp|Q8TT29|TF2B_METAC Transcription initiation factor IIB OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=tfb
PE=3 SV=1
Length = 337
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL + + A ++R +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIEEVSRVSRKEIGRTYRFISRELALKLMPTSPID------YVPRFCSGLNLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q + I K + R P ++AAAIY+A L +R+TQ E+ V G+TEVT+R
Sbjct: 262 EVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEELD 332
>sp|P0CW14|TF2B_METMZ Transcription initiation factor IIB OS=Methanosarcina mazei GN=tfb
PE=3 SV=1
Length = 337
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 132 NLRAYLQIID-VASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ 190
NL L +D +AS LGL + + A ++R +R RS+E +A AAL A R+
Sbjct: 148 NLAFALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCS 207
Query: 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL----SQPINSNSIAVHMPRFCTLLQLNK 246
PRTL EI + V +KEIG+ + + L L + PI+ ++PRFC+ L L
Sbjct: 208 VPRTLDEIEEVSRVSRKEIGRTYRFISRELALKLMPTSPID------YVPRFCSGLNLKG 261
Query: 247 SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306
Q + I K + R P ++AAAIY+A L +R+TQ E+ V G+TEVT+R
Sbjct: 262 EVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIR 321
Query: 307 KVYKELLENWD 317
YKEL E D
Sbjct: 322 NRYKELAEELD 332
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,808,357
Number of Sequences: 539616
Number of extensions: 7669600
Number of successful extensions: 25202
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 24967
Number of HSP's gapped (non-prelim): 147
length of query: 510
length of database: 191,569,459
effective HSP length: 122
effective length of query: 388
effective length of database: 125,736,307
effective search space: 48785687116
effective search space used: 48785687116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)