Query 046187
Match_columns 510
No_of_seqs 246 out of 1067
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 16:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 3.3E-69 1.1E-73 557.1 13.4 309 1-337 22-342 (345)
2 3k7a_M Transcription initiatio 100.0 4.5E-65 1.5E-69 525.8 12.3 307 1-337 22-342 (345)
3 1ais_B TFB TFIIB, protein (tra 100.0 4E-41 1.4E-45 320.1 26.6 189 133-321 10-198 (200)
4 1c9b_A General transcription f 100.0 3.2E-40 1.1E-44 315.8 26.3 203 132-337 5-207 (207)
5 1zp2_A RNA polymerase II holoe 99.9 1E-24 3.5E-29 212.6 19.8 182 134-318 30-220 (235)
6 2i53_A Cyclin K; cell cycle, t 99.9 5.1E-22 1.7E-26 195.3 19.6 182 135-318 44-251 (258)
7 2ivx_A Cyclin-T2; transcriptio 99.9 1.4E-21 4.9E-26 192.3 22.8 182 135-318 34-240 (257)
8 3rgf_B Cyclin-C; protein kinas 99.9 1.2E-21 4.1E-26 196.7 21.9 217 129-350 38-275 (285)
9 2b9r_A Human cyclin B1; cell c 99.9 4.1E-21 1.4E-25 191.1 18.6 181 137-319 43-226 (269)
10 2cch_B Cyclin A2, cyclin-A; co 99.9 2.7E-20 9.1E-25 184.1 20.0 181 136-318 43-228 (260)
11 2pk2_A Cyclin-T1, protein TAT; 99.8 5.1E-21 1.7E-25 198.4 13.0 182 135-318 41-247 (358)
12 2w96_A G1/S-specific cyclin-D1 99.8 1.8E-19 6.1E-24 179.2 21.5 184 137-322 62-261 (271)
13 1jkw_A Cyclin H; cell cycle, c 99.8 3.7E-18 1.3E-22 174.5 22.3 180 137-318 62-261 (323)
14 1g3n_C V-cyclin; cyclin-depend 99.8 3.3E-18 1.1E-22 168.9 18.7 181 137-319 56-249 (257)
15 2f2c_A Cyclin homolog, V-cycli 99.8 9.5E-18 3.2E-22 165.3 20.6 180 137-318 57-248 (254)
16 1w98_B Cyclin E, G1/S-specific 99.7 8.7E-17 3E-21 161.3 19.3 174 137-319 55-243 (283)
17 3g33_B CCND3 protein; Ser/Thr 99.7 1.8E-16 6.3E-21 160.8 20.8 185 137-323 76-272 (306)
18 3k1f_M Transcription initiatio 99.5 2.3E-15 8E-20 140.1 2.0 65 1-77 22-87 (197)
19 1dl6_A Transcription factor II 99.5 8.8E-15 3E-19 114.3 3.2 46 1-49 12-57 (58)
20 1ais_B TFB TFIIB, protein (tra 99.4 1.3E-12 4.6E-17 123.6 12.9 90 136-225 109-198 (200)
21 1f5q_B Gamma herpesvirus cycli 99.3 2.7E-10 9.2E-15 112.7 20.8 178 138-319 55-243 (252)
22 1c9b_A General transcription f 99.2 9.5E-11 3.3E-15 111.5 11.3 91 135-225 102-192 (207)
23 1pft_A TFIIB, PFTFIIBN; N-term 99.2 7.5E-12 2.6E-16 94.4 2.8 44 1-47 6-49 (50)
24 4bbr_M Transcription initiatio 99.0 1.3E-09 4.4E-14 112.5 10.5 89 231-319 129-217 (345)
25 3k7a_M Transcription initiatio 98.6 1.4E-08 4.6E-13 104.6 3.8 87 232-318 130-216 (345)
26 1zp2_A RNA polymerase II holoe 98.1 2.9E-05 9.9E-10 75.1 12.1 87 232-318 32-127 (235)
27 3h4c_A Transcription factor TF 97.6 0.00082 2.8E-08 64.4 13.8 142 138-281 18-167 (260)
28 2i53_A Cyclin K; cell cycle, t 97.5 0.00034 1.2E-08 68.1 9.9 87 232-318 45-144 (258)
29 2ivx_A Cyclin-T2; transcriptio 97.5 0.00082 2.8E-08 65.5 11.9 87 232-318 35-139 (257)
30 1jkw_A Cyclin H; cell cycle, c 97.4 0.00064 2.2E-08 69.2 11.0 87 232-318 61-156 (323)
31 3rgf_B Cyclin-C; protein kinas 97.4 0.0013 4.4E-08 65.6 12.1 87 232-318 47-150 (285)
32 2b9r_A Human cyclin B1; cell c 97.1 0.0026 8.8E-08 62.8 11.4 87 232-318 42-131 (269)
33 2w96_A G1/S-specific cyclin-D1 97.0 0.004 1.4E-07 61.3 10.9 87 232-318 61-150 (271)
34 2pk2_A Cyclin-T1, protein TAT; 96.9 0.0015 5.1E-08 67.5 8.0 87 232-318 42-146 (358)
35 2cch_B Cyclin A2, cyclin-A; co 96.9 0.0036 1.2E-07 61.3 10.1 87 232-318 43-132 (260)
36 3m03_A ORC6, origin recognitio 96.9 0.005 1.7E-07 52.3 9.2 81 138-220 5-91 (95)
37 1g3n_C V-cyclin; cyclin-depend 96.7 0.0068 2.3E-07 59.2 9.9 87 232-318 55-144 (257)
38 1w98_B Cyclin E, G1/S-specific 96.6 0.0093 3.2E-07 59.3 10.7 87 232-318 54-144 (283)
39 4ell_A Retinoblastoma-associat 96.4 0.0072 2.5E-07 63.6 8.8 68 135-202 282-352 (411)
40 2r7g_A PP110, retinoblastoma-a 96.3 0.01 3.6E-07 61.1 9.0 68 135-202 218-288 (347)
41 2f2c_A Cyclin homolog, V-cycli 96.2 0.012 4.1E-07 57.3 8.7 87 232-318 56-145 (254)
42 4elj_A Retinoblastoma-associat 95.9 0.024 8.2E-07 62.8 9.8 68 135-202 527-597 (656)
43 2qdj_A Retinoblastoma-associat 95.3 0.06 2.1E-06 54.6 9.6 77 138-218 5-86 (304)
44 3g33_B CCND3 protein; Ser/Thr 95.3 0.057 1.9E-06 54.3 9.4 87 232-318 75-164 (306)
45 3m03_A ORC6, origin recognitio 93.5 0.39 1.3E-05 40.7 9.0 82 235-318 6-93 (95)
46 2pk7_A Uncharacterized protein 91.8 0.076 2.6E-06 42.5 2.3 28 1-32 9-36 (69)
47 4elj_A Retinoblastoma-associat 91.7 0.73 2.5E-05 51.2 10.6 71 138-209 7-82 (656)
48 2hf1_A Tetraacyldisaccharide-1 91.5 0.078 2.7E-06 42.3 2.1 28 1-32 9-36 (68)
49 2js4_A UPF0434 protein BB2007; 91.5 0.073 2.5E-06 42.7 1.9 28 1-32 9-36 (70)
50 2jr6_A UPF0434 protein NMA0874 91.3 0.083 2.8E-06 42.1 2.0 28 1-32 9-36 (68)
51 1l9z_H Sigma factor SIGA; heli 91.1 15 0.0005 38.8 19.6 31 287-317 394-424 (438)
52 2jny_A Uncharacterized BCR; st 91.0 0.093 3.2E-06 41.8 2.1 28 1-32 11-38 (67)
53 1qxf_A GR2, 30S ribosomal prot 91.0 0.057 2E-06 42.8 0.7 30 2-34 9-38 (66)
54 2r7g_A PP110, retinoblastoma-a 90.5 1.7 5.7E-05 44.8 11.4 125 175-299 105-289 (347)
55 2lnb_A Z-DNA-binding protein 1 90.1 0.24 8.1E-06 40.6 3.7 47 179-225 21-67 (80)
56 3j20_W 30S ribosomal protein S 89.6 0.097 3.3E-06 41.2 1.0 30 2-34 17-46 (63)
57 1f5q_B Gamma herpesvirus cycli 89.4 1.9 6.5E-05 42.1 10.4 86 232-317 53-141 (252)
58 2xzm_6 RPS27E; ribosome, trans 88.8 0.1 3.6E-06 42.9 0.7 30 2-34 34-63 (81)
59 3u5c_b RP61, YS20, 40S ribosom 88.5 0.15 5.1E-06 42.1 1.4 30 2-34 36-65 (82)
60 3j20_Y 30S ribosomal protein S 87.8 0.2 7E-06 37.5 1.7 27 2-32 21-47 (50)
61 3iz6_X 40S ribosomal protein S 87.1 0.18 6.2E-06 41.9 1.1 30 2-34 38-67 (86)
62 1vq8_Z 50S ribosomal protein L 86.3 0.17 5.7E-06 41.9 0.5 27 2-32 29-55 (83)
63 2pmi_B PHO85 cyclin PHO80, ami 84.6 11 0.00036 38.0 12.7 90 229-318 75-168 (293)
64 2jpc_A SSRB; DNA binding prote 84.3 0.97 3.3E-05 33.4 4.0 32 287-318 12-43 (61)
65 1je8_A Nitrate/nitrite respons 83.5 1.8 6E-05 34.6 5.4 32 287-318 35-66 (82)
66 2w7n_A TRFB transcriptional re 82.9 2.1 7.1E-05 36.5 5.8 51 269-324 20-71 (101)
67 2jt1_A PEFI protein; solution 82.7 1.1 3.6E-05 36.3 3.8 30 286-315 22-51 (77)
68 3h4c_A Transcription factor TF 82.6 4.7 0.00016 38.8 8.6 61 233-293 17-80 (260)
69 2qdj_A Retinoblastoma-associat 82.1 4.6 0.00016 40.8 9.0 69 235-304 6-79 (304)
70 3ulq_B Transcriptional regulat 81.8 1.6 5.5E-05 35.8 4.7 32 287-318 43-74 (90)
71 1fse_A GERE; helix-turn-helix 81.7 2.4 8.2E-05 32.2 5.4 32 287-318 25-56 (74)
72 2pmi_B PHO85 cyclin PHO80, ami 81.7 24 0.00084 35.3 14.0 97 139-238 81-181 (293)
73 2o8x_A Probable RNA polymerase 81.7 2.4 8.1E-05 31.9 5.3 36 287-322 30-65 (70)
74 2k4x_A 30S ribosomal protein S 81.1 0.66 2.2E-05 35.4 1.9 26 2-31 20-45 (55)
75 2p7v_B Sigma-70, RNA polymeras 81.1 2.3 7.9E-05 32.4 5.0 36 287-322 24-59 (68)
76 1x3u_A Transcriptional regulat 81.0 2.5 8.6E-05 32.7 5.4 32 287-318 30-61 (79)
77 1tc3_C Protein (TC3 transposas 80.4 1.7 5.7E-05 29.8 3.7 26 287-312 20-45 (51)
78 1t6s_A Conserved hypothetical 79.7 4.5 0.00015 37.2 7.4 42 176-221 10-53 (162)
79 3c57_A Two component transcrip 79.0 2.3 7.9E-05 34.9 4.7 36 287-322 41-76 (95)
80 4ell_A Retinoblastoma-associat 78.9 2.7 9.2E-05 44.2 6.2 65 235-299 286-353 (411)
81 1ku3_A Sigma factor SIGA; heli 78.0 3.9 0.00013 31.5 5.6 35 287-321 29-64 (73)
82 3hug_A RNA polymerase sigma fa 77.0 2.4 8.1E-05 34.3 4.2 33 287-319 52-84 (92)
83 1tty_A Sigma-A, RNA polymerase 75.7 4.9 0.00017 32.2 5.7 34 287-320 37-70 (87)
84 2rnj_A Response regulator prot 75.6 2.3 7.8E-05 34.4 3.7 32 287-318 43-74 (91)
85 1jhg_A Trp operon repressor; c 75.4 2.6 8.9E-05 36.0 4.1 29 286-315 56-84 (101)
86 3o9x_A Uncharacterized HTH-typ 74.2 0.7 2.4E-05 39.9 0.2 29 1-32 3-46 (133)
87 1p4w_A RCSB; solution structur 72.8 3.1 0.00011 34.8 4.0 31 288-318 49-79 (99)
88 1qbj_A Protein (double-strande 72.1 4.4 0.00015 32.9 4.5 30 286-315 25-54 (81)
89 4ham_A LMO2241 protein; struct 71.8 3.2 0.00011 36.1 3.9 31 286-316 35-66 (134)
90 2a6h_F RNA polymerase sigma fa 71.7 43 0.0015 34.8 13.2 31 287-317 379-409 (423)
91 2x48_A CAG38821; archeal virus 70.9 3.4 0.00012 29.9 3.3 24 287-310 30-53 (55)
92 2z99_A Putative uncharacterize 70.6 37 0.0013 32.7 11.4 43 175-221 17-59 (219)
93 2k5r_A Uncharacterized protein 69.0 1.7 5.8E-05 36.9 1.4 13 18-32 51-63 (97)
94 1twf_L ABC10-alpha, DNA-direct 69.0 1.8 6.1E-05 34.6 1.5 26 2-32 30-56 (70)
95 3neu_A LIN1836 protein; struct 68.8 5 0.00017 34.6 4.5 31 286-316 34-65 (125)
96 2lfw_A PHYR sigma-like domain; 68.4 6.5 0.00022 34.6 5.3 37 287-323 108-144 (157)
97 3e6c_C CPRK, cyclic nucleotide 68.4 20 0.0007 33.1 9.1 30 287-316 176-205 (250)
98 2kpi_A Uncharacterized protein 68.2 2 6.9E-05 32.8 1.6 26 1-32 11-38 (56)
99 1qgp_A Protein (double strande 68.0 4.7 0.00016 32.2 3.8 29 287-315 30-58 (77)
100 3ga8_A HTH-type transcriptiona 67.8 1.2 4.2E-05 35.7 0.3 29 1-32 3-46 (78)
101 3lwf_A LIN1550 protein, putati 67.6 7.6 0.00026 35.2 5.6 46 174-219 26-71 (159)
102 3tqn_A Transcriptional regulat 67.0 4.8 0.00016 34.0 3.9 31 286-316 30-61 (113)
103 1uxc_A FRUR (1-57), fructose r 66.6 4.7 0.00016 31.2 3.5 22 289-310 1-22 (65)
104 1xn7_A Hypothetical protein YH 66.3 6.6 0.00022 31.7 4.4 31 286-316 14-44 (78)
105 1l3l_A Transcriptional activat 66.1 7.1 0.00024 36.7 5.3 32 287-318 187-218 (234)
106 2w48_A Sorbitol operon regulat 66.0 7.6 0.00026 38.5 5.8 32 284-315 17-48 (315)
107 2htj_A P fimbrial regulatory p 65.5 10 0.00035 29.8 5.4 29 287-315 13-41 (81)
108 3la7_A Global nitrogen regulat 65.3 19 0.00063 33.4 8.1 30 287-316 192-221 (243)
109 2y75_A HTH-type transcriptiona 65.0 12 0.00041 31.8 6.2 43 273-315 10-53 (129)
110 2b0l_A GTP-sensing transcripti 64.8 4.7 0.00016 33.8 3.4 30 286-315 40-70 (102)
111 1jko_C HIN recombinase, DNA-in 64.5 2.3 7.9E-05 29.6 1.2 24 288-311 21-44 (52)
112 4ich_A Transcriptional regulat 64.2 3.3 0.00011 40.2 2.6 108 192-311 43-163 (311)
113 3i4p_A Transcriptional regulat 64.2 8.7 0.0003 34.3 5.3 31 286-316 15-45 (162)
114 3mzy_A RNA polymerase sigma-H 63.8 7.3 0.00025 33.3 4.6 33 287-319 123-155 (164)
115 3by6_A Predicted transcription 63.7 5.9 0.0002 34.3 3.9 30 286-315 32-62 (126)
116 3j21_g 50S ribosomal protein L 63.6 1.9 6.5E-05 32.5 0.6 23 1-31 15-37 (51)
117 2heo_A Z-DNA binding protein 1 63.6 8.6 0.0003 29.6 4.5 33 187-219 20-52 (67)
118 3qt1_I DNA-directed RNA polyme 63.5 4.1 0.00014 36.3 2.9 31 2-32 26-56 (133)
119 1q1h_A TFE, transcription fact 63.4 9.7 0.00033 31.4 5.1 32 285-316 30-61 (110)
120 3h0g_I DNA-directed RNA polyme 63.2 3.6 0.00012 35.5 2.4 32 2-33 6-37 (113)
121 3dv8_A Transcriptional regulat 62.9 19 0.00065 32.2 7.4 29 287-315 168-196 (220)
122 2q0o_A Probable transcriptiona 62.8 7 0.00024 36.8 4.6 32 287-318 189-220 (236)
123 3szt_A QCSR, quorum-sensing co 62.4 7.2 0.00024 37.0 4.6 32 287-318 189-220 (237)
124 2y75_A HTH-type transcriptiona 62.2 12 0.00042 31.8 5.7 42 178-219 12-53 (129)
125 2heo_A Z-DNA binding protein 1 61.8 11 0.00037 29.0 4.7 33 285-317 22-54 (67)
126 1wii_A Hypothetical UPF0222 pr 61.5 3.2 0.00011 34.4 1.6 33 2-34 25-59 (85)
127 2dbb_A Putative HTH-type trans 61.2 12 0.00041 32.6 5.5 30 286-315 21-50 (151)
128 2p5k_A Arginine repressor; DNA 60.7 16 0.00054 26.9 5.4 27 286-312 17-48 (64)
129 2cg4_A Regulatory protein ASNC 60.7 12 0.00043 32.6 5.6 30 286-315 20-49 (152)
130 2d1h_A ST1889, 109AA long hypo 60.5 11 0.00037 30.1 4.8 30 286-315 34-63 (109)
131 2fmy_A COOA, carbon monoxide o 60.4 22 0.00075 32.1 7.4 30 287-316 166-195 (220)
132 2gau_A Transcriptional regulat 60.4 26 0.00088 31.8 7.9 30 286-315 178-207 (232)
133 2ek5_A Predicted transcription 60.2 8.4 0.00029 33.5 4.3 30 286-315 25-55 (129)
134 3t8r_A Staphylococcus aureus C 60.1 8.8 0.0003 33.9 4.5 44 176-219 12-55 (143)
135 2cyy_A Putative HTH-type trans 60.0 13 0.00044 32.5 5.6 30 286-315 19-48 (151)
136 1i1g_A Transcriptional regulat 59.6 14 0.00047 31.6 5.6 30 286-315 16-45 (141)
137 3b02_A Transcriptional regulat 59.4 17 0.00057 32.3 6.3 30 287-316 138-167 (195)
138 1xsv_A Hypothetical UPF0122 pr 59.4 14 0.00046 31.4 5.4 33 287-319 40-72 (113)
139 2cfx_A HTH-type transcriptiona 59.1 13 0.00045 32.2 5.4 30 286-315 17-46 (144)
140 2e1c_A Putative HTH-type trans 58.8 13 0.00043 33.8 5.4 30 286-315 39-68 (171)
141 3lwf_A LIN1550 protein, putati 58.7 12 0.00041 33.9 5.2 38 278-315 34-71 (159)
142 2jt1_A PEFI protein; solution 58.5 12 0.00041 30.0 4.6 30 190-219 22-51 (77)
143 1s7o_A Hypothetical UPF0122 pr 58.4 11 0.00037 32.2 4.6 32 287-318 37-68 (113)
144 1or7_A Sigma-24, RNA polymeras 58.3 7.2 0.00024 34.7 3.6 34 287-320 155-188 (194)
145 3iwf_A Transcription regulator 58.1 39 0.0013 28.4 8.0 61 234-318 4-73 (107)
146 2pn6_A ST1022, 150AA long hypo 57.0 14 0.00048 32.0 5.3 30 286-315 15-44 (150)
147 1twf_I B12.6, DNA-directed RNA 56.8 3.7 0.00013 35.9 1.4 33 1-33 5-37 (122)
148 2p5v_A Transcriptional regulat 56.7 15 0.0005 32.5 5.4 30 286-315 22-51 (162)
149 1gh9_A 8.3 kDa protein (gene M 56.3 3.5 0.00012 33.0 1.0 25 2-32 6-30 (71)
150 2l8n_A Transcriptional repress 55.8 6.2 0.00021 30.7 2.4 22 288-309 9-30 (67)
151 1qyp_A RNA polymerase II; tran 55.5 5.5 0.00019 29.9 2.0 31 2-32 17-53 (57)
152 3qp6_A CVIR transcriptional re 55.2 11 0.00038 36.5 4.6 32 287-318 211-242 (265)
153 3lsg_A Two-component response 55.0 25 0.00085 28.4 6.2 37 276-312 7-43 (103)
154 2ia0_A Putative HTH-type trans 54.9 16 0.00056 33.0 5.4 30 286-315 29-58 (171)
155 2k02_A Ferrous iron transport 54.6 8 0.00028 32.0 3.0 28 287-314 15-42 (87)
156 3jth_A Transcription activator 54.4 15 0.0005 29.5 4.6 30 286-315 34-63 (98)
157 3t72_q RNA polymerase sigma fa 54.3 20 0.00069 29.9 5.5 31 287-317 38-68 (99)
158 2apo_B Ribosome biogenesis pro 54.2 3.8 0.00013 31.9 0.9 21 2-32 8-28 (60)
159 1ylf_A RRF2 family protein; st 54.1 14 0.00047 32.6 4.7 44 174-218 13-56 (149)
160 3e97_A Transcriptional regulat 53.9 23 0.00078 32.1 6.4 30 287-316 174-203 (231)
161 3ryp_A Catabolite gene activat 53.7 23 0.00079 31.4 6.3 29 287-315 166-194 (210)
162 3t8r_A Staphylococcus aureus C 53.7 11 0.00037 33.3 3.9 39 277-315 17-55 (143)
163 2oz6_A Virulence factor regula 53.7 19 0.00065 31.9 5.7 29 287-315 163-191 (207)
164 2w25_A Probable transcriptiona 53.6 18 0.00062 31.4 5.4 30 286-315 19-48 (150)
165 2elh_A CG11849-PA, LD40883P; s 53.5 23 0.00077 28.3 5.5 29 288-316 38-66 (87)
166 2zcw_A TTHA1359, transcription 53.2 20 0.00068 31.9 5.7 29 287-315 145-173 (202)
167 4esj_A Type-2 restriction enzy 53.1 5.9 0.0002 38.8 2.2 30 1-32 35-66 (257)
168 3frw_A Putative Trp repressor 53.0 21 0.00073 30.7 5.5 32 283-314 53-84 (107)
169 2l0k_A Stage III sporulation p 52.9 9.3 0.00032 31.9 3.1 23 289-311 21-43 (93)
170 3d0s_A Transcriptional regulat 52.5 37 0.0013 30.5 7.6 29 287-315 176-204 (227)
171 1ylf_A RRF2 family protein; st 52.2 19 0.00065 31.7 5.3 43 273-315 15-57 (149)
172 1y0u_A Arsenical resistance op 52.0 20 0.00068 28.8 5.0 29 287-315 42-70 (96)
173 3jyw_9 60S ribosomal protein L 51.7 8.3 0.00028 31.0 2.5 27 2-32 28-54 (72)
174 1oyi_A Double-stranded RNA-bin 51.7 21 0.00073 29.2 5.1 28 289-316 31-58 (82)
175 3bro_A Transcriptional regulat 51.6 67 0.0023 26.6 8.5 29 287-315 49-77 (141)
176 3pqk_A Biofilm growth-associat 51.4 17 0.00058 29.4 4.5 30 286-315 34-63 (102)
177 3r0a_A Putative transcriptiona 51.3 21 0.00071 30.4 5.3 31 285-315 38-69 (123)
178 1tfi_A Transcriptional elongat 51.1 7.3 0.00025 28.9 2.0 30 2-31 11-46 (50)
179 3e6c_C CPRK, cyclic nucleotide 51.0 43 0.0015 30.8 7.9 30 190-219 175-204 (250)
180 3clo_A Transcriptional regulat 50.7 15 0.00052 35.0 4.8 32 287-318 211-242 (258)
181 2k9s_A Arabinose operon regula 50.6 24 0.00083 28.7 5.4 40 273-312 5-44 (107)
182 1pdn_C Protein (PRD paired); p 50.4 20 0.00068 29.3 4.9 29 287-315 32-60 (128)
183 1j5y_A Transcriptional regulat 50.2 23 0.0008 32.2 5.8 30 286-315 34-63 (187)
184 3dkw_A DNR protein; CRP-FNR, H 50.0 20 0.00069 32.2 5.3 32 286-317 176-207 (227)
185 3oou_A LIN2118 protein; protei 49.9 31 0.001 28.1 6.0 39 273-312 7-45 (108)
186 2kko_A Possible transcriptiona 49.6 23 0.00078 29.3 5.1 30 286-315 36-65 (108)
187 2pg4_A Uncharacterized protein 49.6 33 0.0011 27.3 5.9 31 285-315 27-58 (95)
188 1v4r_A Transcriptional repress 49.3 4.9 0.00017 33.1 0.8 28 287-314 33-61 (102)
189 3nrv_A Putative transcriptiona 48.9 45 0.0015 28.1 7.1 28 288-315 54-81 (148)
190 2akl_A PHNA-like protein PA012 48.7 7.4 0.00025 34.8 1.9 24 2-30 29-52 (138)
191 1nui_A DNA primase/helicase; z 48.6 6.8 0.00023 37.6 1.9 27 2-31 16-42 (255)
192 3kcc_A Catabolite gene activat 48.6 33 0.0011 32.1 6.8 29 288-316 217-245 (260)
193 1zyb_A Transcription regulator 48.5 29 0.001 31.7 6.2 29 287-315 185-213 (232)
194 3v2d_5 50S ribosomal protein L 48.5 5.3 0.00018 30.9 0.9 21 2-31 32-52 (60)
195 1x3u_A Transcriptional regulat 47.7 41 0.0014 25.5 6.0 47 192-245 31-77 (79)
196 3fx3_A Cyclic nucleotide-bindi 47.5 30 0.001 31.5 6.1 31 286-316 176-206 (237)
197 3bpv_A Transcriptional regulat 47.0 85 0.0029 25.8 8.5 30 286-315 41-70 (138)
198 2nnn_A Probable transcriptiona 46.7 67 0.0023 26.4 7.7 28 288-315 52-79 (140)
199 3cuo_A Uncharacterized HTH-typ 46.7 27 0.00094 27.4 5.0 29 286-314 36-64 (99)
200 1qbj_A Protein (double-strande 46.6 30 0.001 27.9 5.2 29 191-219 26-54 (81)
201 1sfx_A Conserved hypothetical 46.6 25 0.00084 27.8 4.7 29 287-315 33-61 (109)
202 3c7j_A Transcriptional regulat 46.4 18 0.00061 34.3 4.5 30 286-315 47-76 (237)
203 3j21_i 50S ribosomal protein L 46.4 7.1 0.00024 32.2 1.4 27 2-32 37-63 (83)
204 3la7_A Global nitrogen regulat 46.3 41 0.0014 31.0 6.9 30 190-219 191-220 (243)
205 1rp3_A RNA polymerase sigma fa 46.2 1.6E+02 0.0056 26.3 18.8 34 286-319 201-234 (239)
206 3kor_A Possible Trp repressor; 45.9 31 0.0011 30.2 5.5 30 283-312 70-99 (119)
207 1qgp_A Protein (double strande 45.8 27 0.00093 27.6 4.8 30 190-219 29-58 (77)
208 3b02_A Transcriptional regulat 45.6 33 0.0011 30.3 5.9 29 191-219 138-166 (195)
209 1j1v_A Chromosomal replication 45.4 36 0.0012 28.1 5.7 41 180-222 36-77 (94)
210 1ug2_A 2610100B20RIK gene prod 45.2 38 0.0013 28.4 5.6 41 182-222 44-86 (95)
211 3mn2_A Probable ARAC family tr 45.1 41 0.0014 27.3 6.0 39 273-312 4-42 (108)
212 2fmy_A COOA, carbon monoxide o 44.8 43 0.0015 30.0 6.7 29 191-219 166-194 (220)
213 3h5t_A Transcriptional regulat 44.7 12 0.00042 36.7 3.1 24 287-310 8-31 (366)
214 3iz5_m 60S ribosomal protein L 44.6 8.7 0.0003 32.3 1.7 27 2-32 38-64 (92)
215 2hku_A A putative transcriptio 44.6 27 0.00092 31.0 5.2 42 269-311 21-62 (215)
216 3iwz_A CAP-like, catabolite ac 44.6 32 0.0011 30.9 5.7 29 287-315 186-214 (230)
217 3edp_A LIN2111 protein; APC883 44.5 19 0.00066 34.2 4.4 31 286-316 30-61 (236)
218 2zjr_Z 50S ribosomal protein L 44.5 6.2 0.00021 30.5 0.7 21 2-31 32-52 (60)
219 2zcm_A Biofilm operon icaabcd 44.3 35 0.0012 29.5 5.8 42 268-310 7-49 (192)
220 1r1u_A CZRA, repressor protein 44.1 29 0.00098 28.4 4.9 28 287-314 38-65 (106)
221 3dv8_A Transcriptional regulat 44.1 40 0.0014 30.0 6.3 44 176-219 150-196 (220)
222 3k2z_A LEXA repressor; winged 44.1 32 0.0011 31.4 5.7 34 284-317 20-53 (196)
223 1j1v_A Chromosomal replication 43.8 40 0.0014 27.8 5.7 70 231-317 3-76 (94)
224 3k69_A Putative transcription 43.8 16 0.00055 33.0 3.5 41 178-219 15-55 (162)
225 2x4h_A Hypothetical protein SS 43.6 57 0.0019 27.4 6.9 30 286-315 29-58 (139)
226 3bwg_A Uncharacterized HTH-typ 43.5 21 0.00073 33.8 4.5 30 286-315 26-56 (239)
227 2hzt_A Putative HTH-type trans 43.5 37 0.0013 27.8 5.5 30 286-315 25-55 (107)
228 1hw1_A FADR, fatty acid metabo 43.4 22 0.00074 33.2 4.5 30 286-315 28-58 (239)
229 1k81_A EIF-2-beta, probable tr 43.3 6.4 0.00022 27.3 0.6 29 2-31 2-30 (36)
230 4ghj_A Probable transcriptiona 43.2 26 0.00088 29.2 4.4 22 286-307 47-68 (101)
231 3izc_m 60S ribosomal protein R 43.1 9 0.00031 32.2 1.5 27 2-32 38-64 (92)
232 3bro_A Transcriptional regulat 43.1 63 0.0022 26.7 7.0 38 182-219 40-77 (141)
233 3f8m_A GNTR-family protein tra 43.0 22 0.00074 34.1 4.5 31 286-316 33-64 (248)
234 2wv0_A YVOA, HTH-type transcri 42.9 22 0.00075 33.9 4.5 30 286-315 31-61 (243)
235 2bgc_A PRFA; bacterial infecti 42.8 47 0.0016 30.4 6.7 30 286-315 166-197 (238)
236 1xd7_A YWNA; structural genomi 42.8 28 0.00096 30.4 4.9 44 173-219 7-50 (145)
237 1on2_A Transcriptional regulat 42.7 38 0.0013 28.7 5.6 28 287-314 21-48 (142)
238 1gnf_A Transcription factor GA 42.6 10 0.00034 27.9 1.5 28 2-31 6-34 (46)
239 1ffk_W Ribosomal protein L37AE 42.5 7.6 0.00026 31.3 0.9 27 2-32 29-55 (73)
240 3lsg_A Two-component response 42.4 55 0.0019 26.3 6.3 38 178-215 5-42 (103)
241 2hsg_A Glucose-resistance amyl 42.2 16 0.00053 35.4 3.4 24 288-311 2-25 (332)
242 1neq_A DNA-binding protein NER 42.0 26 0.0009 27.4 4.1 23 286-308 20-42 (74)
243 1ku9_A Hypothetical protein MJ 42.0 60 0.0021 26.9 6.8 31 285-315 38-68 (152)
244 3g3z_A NMB1585, transcriptiona 41.7 1.4E+02 0.0049 24.7 9.2 28 288-315 45-72 (145)
245 1ft9_A Carbon monoxide oxidati 41.6 24 0.00081 31.9 4.4 31 287-317 162-192 (222)
246 3sxy_A Transcriptional regulat 41.3 21 0.00073 32.9 4.1 31 286-316 33-63 (218)
247 2aus_D NOP10, ribosome biogene 41.3 7.2 0.00025 30.3 0.6 21 2-32 7-27 (60)
248 2gau_A Transcriptional regulat 41.3 56 0.0019 29.4 6.9 30 190-219 178-207 (232)
249 1qpz_A PURA, protein (purine n 41.1 17 0.00058 35.3 3.5 22 289-310 1-22 (340)
250 3cc2_Z 50S ribosomal protein L 41.1 7.4 0.00025 34.0 0.7 27 2-32 62-88 (116)
251 3knw_A Putative transcriptiona 40.8 19 0.00064 31.6 3.4 40 271-311 17-57 (212)
252 3bqz_B HTH-type transcriptiona 40.8 21 0.00071 30.8 3.7 38 273-311 7-45 (194)
253 3qkx_A Uncharacterized HTH-typ 40.7 17 0.00058 31.1 3.0 39 272-311 12-51 (188)
254 3eet_A Putative GNTR-family tr 40.6 24 0.00082 34.3 4.5 31 286-316 50-81 (272)
255 2qwt_A Transcriptional regulat 40.6 18 0.00061 31.9 3.3 37 273-310 18-54 (196)
256 3iyd_F RNA polymerase sigma fa 40.5 6.6 0.00023 42.9 0.4 36 287-322 569-604 (613)
257 1k78_A Paired box protein PAX5 40.4 33 0.0011 29.5 4.9 28 288-315 48-75 (149)
258 2jpc_A SSRB; DNA binding prote 40.1 30 0.001 25.0 4.0 32 192-223 13-44 (61)
259 1uly_A Hypothetical protein PH 40.0 36 0.0012 31.4 5.4 30 286-315 31-60 (192)
260 2qtq_A Transcriptional regulat 40.0 25 0.00087 30.6 4.2 43 271-314 19-62 (213)
261 3dkw_A DNR protein; CRP-FNR, H 39.7 37 0.0013 30.4 5.4 31 189-219 175-205 (227)
262 3vp5_A Transcriptional regulat 39.3 18 0.0006 31.9 3.0 41 271-312 15-56 (189)
263 3lhq_A Acrab operon repressor 39.3 20 0.0007 31.3 3.4 42 272-314 18-60 (220)
264 3tgn_A ADC operon repressor AD 39.1 50 0.0017 27.6 5.8 27 289-315 52-78 (146)
265 2o3f_A Putative HTH-type trans 39.1 22 0.00075 30.1 3.4 53 234-310 8-61 (111)
266 3ihu_A Transcriptional regulat 38.9 24 0.0008 32.8 3.9 31 286-316 37-67 (222)
267 2k9s_A Arabinose operon regula 38.9 48 0.0017 26.9 5.5 39 177-215 5-43 (107)
268 4a17_Y RPL37A, 60S ribosomal p 38.6 9.4 0.00032 32.7 1.0 27 2-32 38-64 (103)
269 3dew_A Transcriptional regulat 38.6 21 0.00072 30.8 3.3 46 272-318 12-58 (206)
270 1zyb_A Transcription regulator 38.5 50 0.0017 30.1 6.1 30 190-219 184-213 (232)
271 1je8_A Nitrate/nitrite respons 38.5 67 0.0023 25.1 6.1 31 193-223 37-67 (82)
272 2lkp_A Transcriptional regulat 38.4 51 0.0018 27.1 5.6 32 287-319 44-75 (119)
273 3lwj_A Putative TETR-family tr 38.2 22 0.00074 31.0 3.4 37 273-310 17-54 (202)
274 2f9i_B Acetyl-coenzyme A carbo 38.1 5.9 0.0002 39.5 -0.4 41 2-49 32-82 (285)
275 2q24_A Putative TETR family tr 38.1 29 0.00099 30.2 4.2 39 271-310 18-56 (194)
276 3f1b_A TETR-like transcription 38.0 21 0.00073 30.9 3.3 38 273-311 19-57 (203)
277 3ulq_B Transcriptional regulat 37.9 57 0.0019 26.3 5.6 31 193-223 45-75 (90)
278 4ev0_A Transcription regulator 37.9 40 0.0014 30.0 5.2 30 287-316 162-191 (216)
279 2e9h_A EIF-5, eukaryotic trans 37.9 13 0.00043 34.2 1.8 43 2-47 105-148 (157)
280 4rxn_A Rubredoxin; electron tr 37.8 12 0.00039 28.4 1.3 7 24-30 38-44 (54)
281 2dk5_A DNA-directed RNA polyme 37.7 47 0.0016 27.2 5.1 29 286-314 34-62 (91)
282 2htj_A P fimbrial regulatory p 37.7 60 0.0021 25.1 5.6 29 191-219 13-41 (81)
283 2xi8_A Putative transcription 37.7 27 0.00091 25.1 3.3 23 287-309 13-35 (66)
284 3ppb_A Putative TETR family tr 37.7 21 0.00071 30.6 3.1 41 271-312 12-53 (195)
285 3e97_A Transcriptional regulat 37.5 70 0.0024 28.8 6.9 30 190-219 173-202 (231)
286 2hs5_A Putative transcriptiona 37.3 25 0.00087 33.2 3.9 31 286-316 49-79 (239)
287 2oqg_A Possible transcriptiona 37.3 39 0.0013 27.4 4.7 29 287-315 33-61 (114)
288 3dcf_A Transcriptional regulat 37.2 21 0.00071 31.3 3.1 40 272-312 35-75 (218)
289 3nrw_A Phage integrase/site-sp 37.1 1.1E+02 0.0037 24.8 7.5 36 299-335 70-105 (117)
290 2gxg_A 146AA long hypothetical 37.1 1.3E+02 0.0045 24.8 8.2 30 286-315 48-77 (146)
291 2v57_A TETR family transcripti 36.9 13 0.00045 32.1 1.7 37 272-310 18-54 (190)
292 3f6o_A Probable transcriptiona 36.9 26 0.0009 29.3 3.6 30 286-315 29-58 (118)
293 3oio_A Transcriptional regulat 36.9 36 0.0012 28.0 4.4 39 273-312 9-47 (113)
294 2jn6_A Protein CGL2762, transp 36.9 40 0.0014 27.0 4.6 26 288-313 23-48 (97)
295 1r1t_A Transcriptional repress 36.8 57 0.002 27.6 5.8 29 286-314 57-85 (122)
296 3mkl_A HTH-type transcriptiona 36.6 34 0.0012 28.5 4.2 39 272-311 8-46 (120)
297 3eco_A MEPR; mutlidrug efflux 36.6 40 0.0014 28.1 4.7 29 287-315 46-74 (139)
298 1pb6_A Hypothetical transcript 36.6 24 0.00082 30.8 3.4 48 273-320 23-70 (212)
299 1u78_A TC3 transposase, transp 36.6 32 0.0011 28.8 4.1 26 287-312 21-46 (141)
300 2oz6_A Virulence factor regula 36.5 37 0.0013 29.9 4.8 29 191-219 163-191 (207)
301 2g7s_A Transcriptional regulat 36.5 19 0.00064 30.9 2.6 42 272-314 12-54 (194)
302 3oou_A LIN2118 protein; protei 36.5 63 0.0022 26.2 5.8 38 177-215 7-44 (108)
303 3rd3_A Probable transcriptiona 36.4 44 0.0015 28.6 5.1 39 270-309 12-51 (197)
304 3fx3_A Cyclic nucleotide-bindi 36.4 47 0.0016 30.1 5.5 31 189-219 175-205 (237)
305 1fse_A GERE; helix-turn-helix 36.3 43 0.0015 24.9 4.4 31 193-223 27-57 (74)
306 3kjx_A Transcriptional regulat 36.3 18 0.00061 35.2 2.8 22 288-309 10-31 (344)
307 3df8_A Possible HXLR family tr 36.2 48 0.0016 27.6 5.1 31 285-315 37-70 (111)
308 2f2e_A PA1607; transcription f 36.2 52 0.0018 28.8 5.5 30 286-315 35-64 (146)
309 1zx4_A P1 PARB, plasmid partit 36.2 31 0.0011 32.4 4.2 26 286-311 22-47 (192)
310 1t6s_A Conserved hypothetical 36.1 37 0.0013 31.0 4.7 42 272-317 10-53 (162)
311 3deu_A Transcriptional regulat 36.0 1.2E+02 0.0041 26.4 8.0 31 285-315 65-95 (166)
312 3bni_A Putative TETR-family tr 35.9 24 0.00083 31.9 3.5 42 272-314 47-89 (229)
313 2hr3_A Probable transcriptiona 35.8 1.9E+02 0.0064 23.9 10.0 30 286-315 48-77 (147)
314 2ct7_A Ring finger protein 31; 35.8 16 0.00056 29.5 2.0 35 2-43 27-61 (86)
315 2vut_I AREA, nitrogen regulato 35.7 12 0.00042 27.0 1.1 29 2-32 3-32 (43)
316 1p4x_A Staphylococcal accessor 35.5 2.7E+02 0.0093 26.5 11.0 121 190-315 48-201 (250)
317 2nnn_A Probable transcriptiona 35.3 1.2E+02 0.004 24.9 7.5 28 192-219 52-79 (140)
318 2zcw_A TTHA1359, transcription 35.1 40 0.0014 29.9 4.7 30 190-219 144-173 (202)
319 2rae_A Transcriptional regulat 34.8 46 0.0016 29.0 5.0 41 270-311 19-60 (207)
320 3k69_A Putative transcription 34.8 33 0.0011 30.9 4.1 38 278-316 19-56 (162)
321 3col_A Putative transcription 34.6 14 0.00049 31.7 1.6 40 271-311 13-53 (196)
322 1ug2_A 2610100B20RIK gene prod 34.5 73 0.0025 26.7 5.7 43 277-319 43-87 (95)
323 3ryp_A Catabolite gene activat 34.4 42 0.0014 29.6 4.7 29 191-219 166-194 (210)
324 3qbm_A TETR transcriptional re 34.3 49 0.0017 28.3 5.1 38 272-310 11-49 (199)
325 2g2k_A EIF-5, eukaryotic trans 34.3 13 0.00044 34.6 1.2 45 2-49 98-143 (170)
326 3b81_A Transcriptional regulat 34.2 49 0.0017 28.5 5.1 37 272-309 15-52 (203)
327 6rxn_A Rubredoxin; electron tr 34.2 11 0.00038 27.6 0.6 7 24-30 32-38 (46)
328 2ao9_A Phage protein; structur 34.2 69 0.0024 29.1 6.1 23 288-310 48-70 (155)
329 2a6c_A Helix-turn-helix motif; 34.1 40 0.0014 26.1 4.0 26 284-309 27-52 (83)
330 2p7v_B Sigma-70, RNA polymeras 34.1 48 0.0016 24.7 4.4 32 191-222 24-55 (68)
331 3cwr_A Transcriptional regulat 34.1 21 0.00073 30.9 2.6 45 272-317 21-66 (208)
332 3r0a_A Putative transcriptiona 34.1 48 0.0016 28.0 4.8 37 182-218 31-68 (123)
333 3pvv_A Chromosomal replication 34.1 69 0.0023 26.9 5.7 71 230-317 6-79 (101)
334 2di3_A Bacterial regulatory pr 34.0 39 0.0013 31.6 4.6 32 286-317 25-57 (239)
335 4gat_A Nitrogen regulatory pro 33.9 11 0.00038 29.6 0.7 29 2-32 11-40 (66)
336 3eco_A MEPR; mutlidrug efflux 33.8 80 0.0028 26.1 6.2 38 182-219 37-74 (139)
337 3fm5_A Transcriptional regulat 33.6 1.4E+02 0.0049 25.0 7.9 31 285-315 51-81 (150)
338 3u2r_A Regulatory protein MARR 33.5 87 0.003 27.1 6.6 30 286-315 60-89 (168)
339 1r69_A Repressor protein CI; g 33.4 34 0.0012 24.8 3.3 24 286-309 12-35 (69)
340 3kz9_A SMCR; transcriptional r 33.4 24 0.00083 30.5 2.9 37 273-310 22-59 (206)
341 2fu4_A Ferric uptake regulatio 33.3 57 0.0019 25.2 4.8 29 287-315 32-65 (83)
342 3vpr_A Transcriptional regulat 33.3 55 0.0019 28.3 5.2 37 273-310 8-45 (190)
343 3kkc_A TETR family transcripti 33.1 27 0.00092 29.7 3.1 38 272-310 16-54 (177)
344 3on4_A Transcriptional regulat 33.1 33 0.0011 29.3 3.7 38 272-310 14-52 (191)
345 3k2z_A LEXA repressor; winged 33.0 57 0.002 29.7 5.5 39 181-219 13-51 (196)
346 1z7u_A Hypothetical protein EF 33.0 54 0.0018 27.1 4.9 29 287-315 34-63 (112)
347 3mn2_A Probable ARAC family tr 32.9 88 0.003 25.2 6.1 38 177-215 4-41 (108)
348 2fq4_A Transcriptional regulat 32.7 44 0.0015 29.1 4.5 38 272-310 16-54 (192)
349 1j9i_A GPNU1 DBD;, terminase s 32.7 22 0.00075 27.0 2.2 22 289-310 3-24 (68)
350 2pg4_A Uncharacterized protein 32.5 52 0.0018 26.1 4.5 33 187-219 25-58 (95)
351 3dfx_A Trans-acting T-cell-spe 32.5 15 0.00052 28.6 1.2 30 2-33 9-39 (63)
352 3hrs_A Metalloregulator SCAR; 32.4 36 0.0012 31.8 4.0 30 286-315 18-47 (214)
353 3bru_A Regulatory protein, TET 32.4 26 0.0009 30.9 3.0 40 271-311 33-73 (222)
354 3omt_A Uncharacterized protein 32.3 32 0.0011 25.7 3.1 24 287-310 20-43 (73)
355 3pvv_A Chromosomal replication 32.3 74 0.0025 26.6 5.6 41 180-222 40-80 (101)
356 3d0s_A Transcriptional regulat 32.3 81 0.0028 28.2 6.4 30 190-219 175-204 (227)
357 2d6y_A Putative TETR family re 32.2 58 0.002 28.7 5.3 38 272-310 12-50 (202)
358 1u78_A TC3 transposase, transp 32.2 66 0.0023 26.8 5.4 74 138-215 24-102 (141)
359 2fbh_A Transcriptional regulat 32.2 72 0.0025 26.4 5.7 31 285-315 49-79 (146)
360 2eth_A Transcriptional regulat 32.1 64 0.0022 27.4 5.4 28 288-315 58-85 (154)
361 2ras_A Transcriptional regulat 32.1 53 0.0018 28.8 5.0 38 272-310 15-53 (212)
362 2b5a_A C.BCLI; helix-turn-heli 32.0 42 0.0014 25.0 3.7 23 287-309 22-44 (77)
363 1zug_A Phage 434 CRO protein; 32.0 37 0.0013 24.8 3.3 24 286-309 14-37 (71)
364 3h0g_L DNA-directed RNA polyme 31.8 22 0.00075 27.8 2.0 24 2-30 23-46 (63)
365 3f0c_A TETR-molecule A, transc 31.8 45 0.0015 29.2 4.5 39 271-310 14-53 (216)
366 3c2b_A Transcriptional regulat 31.7 32 0.0011 30.4 3.4 44 272-316 19-63 (221)
367 3dpj_A Transcription regulator 31.7 56 0.0019 28.1 5.0 37 273-310 13-50 (194)
368 1u2w_A CADC repressor, cadmium 31.7 54 0.0018 27.6 4.7 29 286-314 54-82 (122)
369 1z4h_A TORI, TOR inhibition pr 31.7 38 0.0013 25.7 3.4 23 289-311 11-33 (66)
370 2kpj_A SOS-response transcript 31.6 52 0.0018 26.0 4.4 24 285-308 19-42 (94)
371 2d1h_A ST1889, 109AA long hypo 31.6 56 0.0019 25.7 4.6 29 190-218 34-62 (109)
372 3b7h_A Prophage LP1 protein 11 31.5 43 0.0015 24.9 3.7 24 286-309 18-41 (78)
373 3kz3_A Repressor protein CI; f 31.3 30 0.001 26.5 2.8 22 287-308 24-45 (80)
374 1zk8_A Transcriptional regulat 31.3 45 0.0015 28.5 4.3 40 270-310 10-50 (183)
375 3bj6_A Transcriptional regulat 31.3 57 0.0019 27.5 4.9 29 287-315 53-81 (152)
376 2yve_A Transcriptional regulat 31.2 28 0.00097 30.3 3.0 39 272-311 8-47 (185)
377 2guh_A Putative TETR-family tr 31.2 38 0.0013 30.6 3.9 50 272-322 43-93 (214)
378 2r1j_L Repressor protein C2; p 31.2 38 0.0013 24.4 3.2 23 287-309 17-39 (68)
379 1ub9_A Hypothetical protein PH 31.1 38 0.0013 26.5 3.5 29 287-315 29-57 (100)
380 1vk6_A NADH pyrophosphatase; 1 31.1 19 0.00066 35.2 2.0 30 2-35 109-138 (269)
381 1twf_I B12.6, DNA-directed RNA 30.9 23 0.00079 30.7 2.2 30 2-31 74-109 (122)
382 1y7y_A C.AHDI; helix-turn-heli 30.9 46 0.0016 24.5 3.7 23 286-308 24-46 (74)
383 2zb9_A Putative transcriptiona 30.8 26 0.00088 31.0 2.6 37 273-310 28-65 (214)
384 3mvp_A TETR/ACRR transcription 30.8 25 0.00087 30.7 2.6 41 273-314 31-72 (217)
385 2jsc_A Transcriptional regulat 30.7 30 0.001 29.0 2.9 28 287-314 33-60 (118)
386 1xd7_A YWNA; structural genomi 30.7 67 0.0023 28.0 5.3 41 273-315 10-50 (145)
387 2p8t_A Hypothetical protein PH 30.6 52 0.0018 31.1 4.8 32 286-317 28-59 (200)
388 3he0_A Transcriptional regulat 30.6 78 0.0027 27.0 5.7 41 269-310 12-53 (196)
389 2qvo_A Uncharacterized protein 30.6 41 0.0014 26.8 3.6 29 287-315 29-57 (95)
390 2iai_A Putative transcriptiona 30.6 57 0.002 29.3 5.1 36 273-309 35-71 (230)
391 1t33_A Putative transcriptiona 30.6 50 0.0017 29.2 4.6 39 272-311 16-54 (224)
392 3u50_C Telomerase-associated p 30.4 20 0.00067 33.3 1.8 33 2-46 44-76 (172)
393 3b73_A PHIH1 repressor-like pr 30.3 50 0.0017 28.1 4.3 28 288-315 27-56 (111)
394 3bs3_A Putative DNA-binding pr 30.3 41 0.0014 25.0 3.4 23 287-309 22-44 (76)
395 2fa5_A Transcriptional regulat 30.3 82 0.0028 26.8 5.8 30 286-315 61-90 (162)
396 3sqn_A Conserved domain protei 30.2 53 0.0018 34.7 5.4 107 191-318 31-138 (485)
397 1rzs_A Antirepressor, regulato 30.2 34 0.0012 25.5 2.8 20 289-308 11-30 (61)
398 1a04_A Nitrate/nitrite respons 29.9 59 0.002 28.9 5.0 31 288-318 169-199 (215)
399 2h09_A Transcriptional regulat 29.9 57 0.0019 28.1 4.7 29 287-315 53-81 (155)
400 3kcc_A Catabolite gene activat 29.8 72 0.0025 29.7 5.8 29 191-219 216-244 (260)
401 3s5r_A Transcriptional regulat 29.8 52 0.0018 28.7 4.5 39 271-310 13-52 (216)
402 3crj_A Transcription regulator 29.8 62 0.0021 28.4 5.1 36 273-309 19-55 (199)
403 2o20_A Catabolite control prot 29.6 11 0.00038 36.5 0.0 25 288-312 5-29 (332)
404 2rdp_A Putative transcriptiona 29.6 80 0.0027 26.4 5.5 29 287-315 55-83 (150)
405 2hku_A A putative transcriptio 29.5 79 0.0027 27.8 5.7 42 172-214 20-61 (215)
406 3jsj_A Putative TETR-family tr 29.5 52 0.0018 28.3 4.4 39 271-310 12-50 (190)
407 3bdd_A Regulatory protein MARR 29.5 63 0.0021 26.7 4.8 29 287-315 44-72 (142)
408 4a0z_A Transcription factor FA 29.5 40 0.0014 31.3 3.8 27 287-313 25-51 (190)
409 1sgm_A Putative HTH-type trans 29.4 30 0.001 29.6 2.8 45 272-317 10-56 (191)
410 2k9q_A Uncharacterized protein 29.4 38 0.0013 25.6 3.1 22 287-308 14-35 (77)
411 3oop_A LIN2960 protein; protei 29.3 2.4E+02 0.0082 23.2 8.7 29 287-315 50-78 (143)
412 2a61_A Transcriptional regulat 29.3 1.7E+02 0.0058 24.1 7.5 29 287-315 46-74 (145)
413 3cjn_A Transcriptional regulat 29.3 67 0.0023 27.5 5.0 30 286-315 64-93 (162)
414 3bhq_A Transcriptional regulat 29.3 67 0.0023 28.3 5.2 26 285-310 28-54 (211)
415 2wiu_B HTH-type transcriptiona 29.3 55 0.0019 25.0 4.1 25 286-310 23-47 (88)
416 3c57_A Two component transcrip 29.2 59 0.002 26.2 4.4 31 193-223 43-73 (95)
417 2pex_A Transcriptional regulat 29.1 2.4E+02 0.0082 23.5 8.6 30 286-315 59-88 (153)
418 2bgc_A PRFA; bacterial infecti 29.1 1.1E+02 0.0036 27.9 6.7 30 190-219 166-197 (238)
419 4fx0_A Probable transcriptiona 29.0 1.9E+02 0.0064 24.8 8.0 29 287-315 51-79 (148)
420 1ku3_A Sigma factor SIGA; heli 29.0 65 0.0022 24.3 4.4 31 191-221 29-59 (73)
421 2ibd_A Possible transcriptiona 28.9 53 0.0018 28.8 4.4 37 273-310 19-56 (204)
422 1ft9_A Carbon monoxide oxidati 28.9 45 0.0015 30.0 4.0 29 191-219 162-190 (222)
423 3pas_A TETR family transcripti 28.8 18 0.00063 31.0 1.2 38 273-311 13-51 (195)
424 2fsw_A PG_0823 protein; alpha- 28.8 69 0.0023 26.1 4.8 30 286-315 36-66 (107)
425 4a5n_A Uncharacterized HTH-typ 28.8 86 0.0029 27.3 5.6 31 285-315 36-67 (131)
426 3vib_A MTRR; helix-turn-helix 28.7 54 0.0019 28.8 4.5 37 273-310 15-52 (210)
427 3gzi_A Transcriptional regulat 28.7 30 0.001 30.5 2.7 38 273-311 22-60 (218)
428 3nrv_A Putative transcriptiona 28.6 1.3E+02 0.0045 25.0 6.7 31 188-219 51-81 (148)
429 4ev0_A Transcription regulator 28.6 58 0.002 28.8 4.7 29 191-219 162-190 (216)
430 1bl0_A Protein (multiple antib 28.6 62 0.0021 27.2 4.6 41 271-312 11-51 (129)
431 3q0w_A HTH-type transcriptiona 28.6 25 0.00085 32.0 2.2 38 272-310 48-86 (236)
432 2dg7_A Putative transcriptiona 28.5 30 0.001 30.0 2.7 47 272-319 11-58 (195)
433 1rkt_A Protein YFIR; transcrip 28.5 67 0.0023 28.1 5.0 25 285-309 28-53 (205)
434 3iwz_A CAP-like, catabolite ac 28.4 60 0.002 29.1 4.7 29 191-219 186-214 (230)
435 1adr_A P22 C2 repressor; trans 28.3 41 0.0014 24.9 3.1 23 287-309 17-39 (76)
436 2gen_A Probable transcriptiona 28.3 61 0.0021 28.4 4.7 38 272-310 11-49 (197)
437 2glo_A Brinker CG9653-PA; prot 28.3 37 0.0013 24.9 2.7 25 291-315 28-52 (59)
438 4aci_A HTH-type transcriptiona 28.3 36 0.0012 29.3 3.1 41 271-312 17-58 (191)
439 3anp_C Transcriptional repress 28.3 56 0.0019 28.6 4.5 26 285-310 25-51 (204)
440 1x57_A Endothelial differentia 28.2 74 0.0025 24.8 4.7 25 285-309 23-47 (91)
441 3t76_A VANU, transcriptional r 28.1 44 0.0015 27.0 3.4 25 286-310 35-59 (88)
442 1tty_A Sigma-A, RNA polymerase 28.1 72 0.0025 25.1 4.6 32 191-222 37-68 (87)
443 1bia_A BIRA bifunctional prote 28.0 49 0.0017 32.8 4.4 29 286-314 17-45 (321)
444 2q1z_A RPOE, ECF SIGE; ECF sig 27.8 7.9 0.00027 34.2 -1.4 32 287-318 150-181 (184)
445 3c3w_A Two component transcrip 27.6 62 0.0021 29.3 4.8 31 288-318 164-194 (225)
446 3qq6_A HTH-type transcriptiona 27.6 46 0.0016 25.6 3.3 24 287-310 22-45 (78)
447 3jw4_A Transcriptional regulat 27.5 46 0.0016 28.1 3.6 29 287-315 56-84 (148)
448 1o5l_A Transcriptional regulat 27.5 21 0.00072 32.2 1.5 30 286-315 162-191 (213)
449 2kae_A GATA-type transcription 27.5 23 0.00078 28.3 1.5 31 2-32 10-40 (71)
450 2lkp_A Transcriptional regulat 27.4 1E+02 0.0034 25.3 5.6 31 192-223 45-75 (119)
451 1p4w_A RCSB; solution structur 27.4 66 0.0023 26.5 4.4 31 193-223 50-80 (99)
452 1stz_A Heat-inducible transcri 27.4 49 0.0017 33.4 4.3 31 285-315 33-65 (338)
453 3cng_A Nudix hydrolase; struct 27.4 25 0.00085 31.7 1.9 27 2-30 5-33 (189)
454 3mnl_A KSTR, transcriptional r 27.4 20 0.00069 31.1 1.3 31 286-316 37-68 (203)
455 3h5o_A Transcriptional regulat 27.4 13 0.00044 36.1 0.0 25 287-311 3-27 (339)
456 3nxc_A HTH-type protein SLMA; 27.3 46 0.0016 28.9 3.7 41 270-310 26-67 (212)
457 4aik_A Transcriptional regulat 27.3 1.9E+02 0.0065 24.8 7.7 31 285-315 43-73 (151)
458 2id3_A Putative transcriptiona 27.3 40 0.0014 30.4 3.3 40 273-313 45-85 (225)
459 2dg8_A Putative TETR-family tr 27.2 27 0.00092 30.5 2.1 41 270-311 11-52 (193)
460 2o8x_A Probable RNA polymerase 27.1 71 0.0024 23.3 4.2 29 193-221 32-60 (70)
461 2nyx_A Probable transcriptiona 27.1 95 0.0033 26.9 5.7 28 288-315 59-86 (168)
462 2frh_A SARA, staphylococcal ac 27.1 48 0.0016 27.8 3.6 29 287-315 52-80 (127)
463 3oio_A Transcriptional regulat 27.0 84 0.0029 25.6 5.1 39 176-215 8-46 (113)
464 3nqo_A MARR-family transcripti 27.0 64 0.0022 28.9 4.7 30 286-315 55-84 (189)
465 3g7r_A Putative transcriptiona 26.9 43 0.0015 30.0 3.5 38 272-310 39-77 (221)
466 3nnr_A Transcriptional regulat 26.8 33 0.0011 30.7 2.6 39 272-311 9-48 (228)
467 3ic7_A Putative transcriptiona 26.7 5.1 0.00017 34.6 -2.8 30 286-315 32-62 (126)
468 3fmy_A HTH-type transcriptiona 26.7 32 0.0011 26.2 2.2 23 286-308 22-44 (73)
469 2f07_A YVDT; helix-turn-helix, 26.7 62 0.0021 28.3 4.5 37 272-309 14-51 (197)
470 2w53_A Repressor, SMet; antibi 26.6 76 0.0026 28.0 5.1 38 271-309 14-52 (219)
471 3s8q_A R-M controller protein; 26.6 54 0.0019 24.9 3.6 22 287-308 23-44 (82)
472 2lr8_A CAsp8-associated protei 32.5 14 0.00047 29.5 0.0 41 181-221 24-65 (70)
473 1z91_A Organic hydroperoxide r 26.5 55 0.0019 27.4 3.9 28 288-315 54-81 (147)
474 1yyv_A Putative transcriptiona 26.5 70 0.0024 27.5 4.6 30 286-315 46-76 (131)
475 3cdl_A Transcriptional regulat 26.5 77 0.0026 27.8 5.0 36 273-309 14-50 (203)
476 3o60_A LIN0861 protein; PSI, M 26.4 22 0.00076 31.7 1.4 27 286-312 37-64 (185)
477 2fiy_A Protein FDHE homolog; F 26.3 29 0.00099 34.9 2.3 32 1-32 223-263 (309)
478 3f6w_A XRE-family like protein 26.2 49 0.0017 25.2 3.2 23 287-309 26-48 (83)
479 3cdh_A Transcriptional regulat 26.1 84 0.0029 26.6 5.1 29 287-315 56-84 (155)
480 2ef8_A C.ECOT38IS, putative tr 26.1 56 0.0019 24.7 3.6 23 287-309 22-44 (84)
481 3hug_A RNA polymerase sigma fa 26.1 69 0.0024 25.4 4.2 28 193-220 54-85 (92)
482 2jj7_A Hemolysin II regulatory 26.1 29 0.00098 29.9 2.0 33 286-318 24-57 (186)
483 1lj9_A Transcriptional regulat 26.0 84 0.0029 26.1 5.0 29 287-315 42-70 (144)
484 2of7_A Putative TETR-family tr 26.0 65 0.0022 29.8 4.6 45 273-318 53-98 (260)
485 1yio_A Response regulatory pro 25.9 92 0.0031 27.4 5.5 31 288-318 157-187 (208)
486 3rh2_A Hypothetical TETR-like 25.9 35 0.0012 30.0 2.6 38 273-311 8-46 (212)
487 3ppb_A Putative TETR family tr 25.9 85 0.0029 26.6 5.1 43 172-214 9-51 (195)
488 1q1h_A TFE, transcription fact 25.8 1E+02 0.0034 25.0 5.3 31 189-219 30-60 (110)
489 3eus_A DNA-binding protein; st 25.8 1.5E+02 0.005 23.0 6.1 54 193-257 28-81 (86)
490 2fbi_A Probable transcriptiona 25.8 68 0.0023 26.4 4.3 28 288-315 50-77 (142)
491 2ict_A Antitoxin HIGA; helix-t 25.8 57 0.0019 25.6 3.6 24 287-310 20-43 (94)
492 2yve_A Transcriptional regulat 25.7 83 0.0028 27.2 5.1 43 172-214 4-46 (185)
493 2ewt_A BLDD, putative DNA-bind 25.7 72 0.0025 23.3 4.0 24 286-309 19-44 (71)
494 2rek_A Putative TETR-family tr 25.6 40 0.0014 29.4 2.9 37 273-310 21-57 (199)
495 1sfx_A Conserved hypothetical 25.5 1E+02 0.0035 24.0 5.2 29 191-219 33-61 (109)
496 2rnj_A Response regulator prot 25.5 60 0.0021 25.7 3.8 32 192-223 44-75 (91)
497 3bqy_A Putative TETR family tr 25.5 42 0.0014 30.5 3.1 47 270-317 4-51 (209)
498 3on2_A Probable transcriptiona 25.3 38 0.0013 29.0 2.7 38 270-308 14-52 (199)
499 1zs4_A Regulatory protein CII; 25.3 34 0.0012 28.1 2.1 20 289-308 25-44 (83)
500 3geu_A Intercellular adhesion 25.1 42 0.0014 28.9 2.9 33 273-305 8-40 (189)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=3.3e-69 Score=557.06 Aligned_cols=309 Identities=20% Similarity=0.283 Sum_probs=169.2
Q ss_pred CCCCCCCCC-CCcccccCCCCccccccccceecccceeecccccccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 046187 1 MKCPYCSAA-QGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPT 79 (510)
Q Consensus 1 m~Cp~C~~~-~~~i~D~~~Gd~~~VC~~CG~Vleer~Id~~~EwR~fs~d~~~~~~~~d~p~~~~d~sRvg~~~dP~l~~ 79 (510)
++||+|+.. +.+++|+.+|+ +||++||+||+|++||+++|||+|++|+ ++ +.|++|||++.||++.+
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G~--~vC~~CGlVl~e~~iD~g~EWR~f~~d~----~~------~~d~sRvG~~~~~~~~~ 89 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEGD--VVCALCGLVLSDKLVDTRSEWRTFSNDD----HN------GDDPSRVGEASNPLLDG 89 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGTE--EEETTTCBEEESCCBCHHHHHTTTSCSC----SS------SCCSSCCEEEECHHHHC
T ss_pred CcCCCCCCCCCceeEECCCCc--EEeCCCCCCccCcccccCccccCCCccc----cc------CCCcCCCCCCCCccccC
Confidence 479999984 44568999999 9999999999999999999999999875 12 44679999999999999
Q ss_pred CccceeecccCCCCcccccccccccchhhHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 046187 80 GFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQL 159 (510)
Q Consensus 80 ~~~tt~i~~~~~~npl~~~T~i~f~~~~~eL~R~~~~s~~~~~~~~~~~~er~L~a~~~I~~ic~~L~LP~~VidtA~~L 159 (510)
.+++|.|++....+. ...++|.|+|+++.+++ .++. +..+|..|.+||++|+||+.|+|+|++|
T Consensus 90 ~glsT~I~~~~~~~~----------~~~~~L~r~q~r~~~~~--~er~----L~~a~~~I~~~~~~L~Lp~~v~d~A~~l 153 (345)
T 4bbr_M 90 NNLSTRIGKGETTDM----------RFTKELNKAQGKNVMDK--KDNE----VQAAFAKITMLCDAAELPKIVKDCAKEA 153 (345)
T ss_dssp SCCCCEEECCSSCCH----------HHHHHHHHHHHHTCCCC--SSSS----TTHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcceeecCCCCcch----------hhHHHHHHHHHhhhcCh--HHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888888876522110 01367999999987766 5665 4669999999999999999999999999
Q ss_pred HHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhcccC----------CCCCc
Q 046187 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQ----------PINSN 229 (510)
Q Consensus 160 yK~a~e~~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i~~----------pv~~~ 229 (510)
|++++++++++||+.+.++|||||+|||++++||||+||+++++|++++|+++|+.|.++|++.. .+...
T Consensus 154 yk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~ 233 (345)
T 4bbr_M 154 YKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGA 233 (345)
T ss_dssp HHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC-------------------
T ss_pred HHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999741 12334
Q ss_pred chhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHH
Q 046187 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 230 ~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrY 309 (510)
+|++||+|||++|+|+.++.+.|++|++++.+.|++.||+|.+|||||||||++++|.++|++||++++|||++|||++|
T Consensus 234 ~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~ry 313 (345)
T 4bbr_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGY 313 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCC-CCCccCCCc
Q 046187 310 KELLENWDDLLPSNYTPAV-PPEKAFPTT 337 (510)
Q Consensus 310 KEL~e~l~~Lip~~~~~~~-~i~~~~p~~ 337 (510)
|||+++++.|+|++|+... .-++.||..
T Consensus 314 kel~~~~~~l~~~~~~~~~~~~~~~l~~~ 342 (345)
T 4bbr_M 314 KILYEHRDKLVDPQLIANGVVSLDNLPGV 342 (345)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHhhcCHHHhhcccCchhhCCCc
Confidence 9999999999999997753 226777754
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-65 Score=525.79 Aligned_cols=307 Identities=21% Similarity=0.287 Sum_probs=158.6
Q ss_pred CCCCCCCCCC-CcccccCCCCccccccccceecccceeecccccccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 046187 1 MKCPYCSAAQ-GRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPT 79 (510)
Q Consensus 1 m~Cp~C~~~~-~~i~D~~~Gd~~~VC~~CG~Vleer~Id~~~EwR~fs~d~~~~~~~~d~p~~~~d~sRvg~~~dP~l~~ 79 (510)
|+||+||+.+ .+++|+.+|+ +||++||+||+|++||+++|||+|++|+ ++ +.+++|+|++.+|++.+
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~--~vC~~CG~Vl~e~~id~~~EwR~F~~~~----~~------~~~~srvG~~~~~~~~~ 89 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGD--VVCALCGLVLSDKLVDTRSEWRTFSNDD----HN------GDDPSRVGEASNPLLDG 89 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCS--CCCSSSCCCCCCCCCCTTCCCCCC------------------------CCCCCSSSC
T ss_pred CcCcCCCCCCCceEEECCCCC--EecCCCCeEcccccccCCcccccccccc----cc------CCCCCccCCCCCccccC
Confidence 6899999964 4668999999 9999999999999999999999999864 12 34579999999999998
Q ss_pred CccceeecccCCCCcccccccccccchhhHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 046187 80 GFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQL 159 (510)
Q Consensus 80 ~~~tt~i~~~~~~npl~~~T~i~f~~~~~eL~R~~~~s~~~~~~~~~~~~er~L~a~~~I~~ic~~L~LP~~VidtA~~L 159 (510)
.+++|.|++..+.+ . .+.++|.|+|+++..++ .++. +..++..|.+||++|+||+.++|+|++|
T Consensus 90 ~~l~T~I~~~~~~~---------~-~~~r~l~~~~~~~~~~~--~er~----l~~a~~~I~~~~~~L~Lp~~v~d~A~~l 153 (345)
T 3k7a_M 90 NNLSTRIGKGETTD---------M-RFTKELNKAQGKNVMDK--KDNE----VQAAFAKITMLCDAAELPKIVKDCAKEA 153 (345)
T ss_dssp CCCCCCCCCTTSCC---------H-HHHHHHHHHHHHHTTSS--CCTT----HHHHHHHHHHHHHHTTCCHHHHTHHHHH
T ss_pred CCCceeeccCCCCC---------c-hhhhhhhhhcccccCCH--HHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88877777641000 0 01357889998876655 5555 4568899999999999999999999999
Q ss_pred HHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhc------------ccCCCC
Q 046187 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQ------------LSQPIN 227 (510)
Q Consensus 160 yK~a~e~~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~------------i~~pv~ 227 (510)
|+++++.++++||+.+.++|||||+|||++++||||+||+.++++++++|+++|+.|.+.|+ +..+
T Consensus 154 yk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~-- 231 (345)
T 3k7a_M 154 YKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMS-- 231 (345)
T ss_dssp HHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSCCSHHHHHHHHHHHHHHTCC----------------
T ss_pred HHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccccccccccccC--
Confidence 99999999999999999999999999999999999999999999999999999999999998 4433
Q ss_pred CcchhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHH
Q 046187 228 SNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 307 (510)
Q Consensus 228 ~~~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRk 307 (510)
..+|++||.|||++|+|+.++.+.|++|++++.+.|++.||+|.+|||||||||++++|.++++++|++++||+++|||+
T Consensus 232 ~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~ 311 (345)
T 3k7a_M 232 GAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKS 311 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCC-CCCccCCCc
Q 046187 308 VYKELLENWDDLLPSNYTPAV-PPEKAFPTT 337 (510)
Q Consensus 308 rYKEL~e~l~~Lip~~~~~~~-~i~~~~p~~ 337 (510)
+||+|+++++.|+|++|.... .-++.||.+
T Consensus 312 ~ykel~~~~~~l~~~~~~~~~~~~~~~lp~~ 342 (345)
T 3k7a_M 312 GYKILYEHRDKLVDPQLIANGVVSLDNLPGV 342 (345)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHhhCCHHHhhcccCCHhhCCCc
Confidence 999999999999999998554 336688774
No 3
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=4e-41 Score=320.13 Aligned_cols=189 Identities=29% Similarity=0.409 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHH
Q 046187 133 LRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKY 212 (510)
Q Consensus 133 L~a~~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~ 212 (510)
..++..|.++|++|+||+.++++|.+||+++++.++++||+.+.++|||||+|||+++.|++++||++++++++++|+++
T Consensus 10 ~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~~~ 89 (200)
T 1ais_B 10 AFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRS 89 (200)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHH
Confidence 45888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHH
Q 046187 213 IKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQA 292 (510)
Q Consensus 213 yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~k 292 (510)
|+.|.+.|++..++...+|+.||.|||++|+|++++.+.|+.|++++.+.+++.||+|.+|||||||+||+++|.+++++
T Consensus 90 ~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ 169 (200)
T 1ais_B 90 YRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQR 169 (200)
T ss_dssp HHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHH
Confidence 99999999988765224699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhcccCC
Q 046187 293 EICKVTGLTEVTLRKVYKELLENWDDLLP 321 (510)
Q Consensus 293 eIa~vagVSe~TIRkrYKEL~e~l~~Lip 321 (510)
||++++||++.||+++|++|++.++.-++
T Consensus 170 ei~~~~~vs~~ti~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 170 EVAEVARVTEVTVRNRYKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999986544
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=3.2e-40 Score=315.78 Aligned_cols=203 Identities=33% Similarity=0.538 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHH
Q 046187 132 NLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211 (510)
Q Consensus 132 ~L~a~~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr 211 (510)
+..++..|.++|.+|+||+.++++|..||+++++.+.++|++.+.++|||||+|||+++.|++++||+.++++++++|++
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~~i~~ 84 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGR 84 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHHH
Confidence 34588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCH
Q 046187 212 YIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQ 291 (510)
Q Consensus 212 ~yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~ 291 (510)
+|+.|.+.|++..++. +|..||.|||+.|++++++.+.|+.|++.+.+.+++.||+|.+|||||||+|++++|.++++
T Consensus 85 ~~~~ll~~L~~~l~~~--~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~ 162 (207)
T 1c9b_A 85 CFKLILKALETSVDLI--TTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQ 162 (207)
T ss_dssp HHHHHHHHTTCCCCCC--CTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHCCCcCcC--CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCH
Confidence 9999999999887654 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhhcccCCCCCCCCCCCCccCCCc
Q 046187 292 AEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTT 337 (510)
Q Consensus 292 keIa~vagVSe~TIRkrYKEL~e~l~~Lip~~~~~~~~i~~~~p~~ 337 (510)
++|++++||++.||+++|++|++.++.++|+||....+ ++.+|.+
T Consensus 163 ~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p~~~~~~~~-~~~l~~~ 207 (207)
T 1c9b_A 163 KEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTP-VDKLPQL 207 (207)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHGGGHHHHSCSSCCCSSC-STTSCCC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhChHHHcccCC-HhhCCCC
Confidence 99999999999999999999999999999888877766 6688763
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1e-24 Score=212.58 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCC-ccHHHHHHHHHHHHHHhcCCCCCHHHHHHHh--------CC
Q 046187 134 RAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRN-RSVEALATAALVQAIREAQEPRTLQEISIAA--------NV 204 (510)
Q Consensus 134 ~a~~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrG-Rs~eaVaAACLYIACR~~~~PrTLkEIa~vt--------~V 204 (510)
.+...|.++|.+|+||+.++.+|..||++++..+.+++ ++...+++||||+|||.++.|++++||+.++ ..
T Consensus 30 ~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~ 109 (235)
T 1zp2_A 30 YQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKL 109 (235)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhc
Confidence 46678889999999999999999999999999999999 9999999999999999999999999999876 57
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHH
Q 046187 205 PQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQL 284 (510)
Q Consensus 205 skkeIgr~yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl 284 (510)
++++|.++.+.|.+.|+++..+. +|..||.+|++.++++.++.+.|+.|++.+...+++.|++|..|||||||+|+++
T Consensus 110 ~~~~I~~~E~~iL~~L~f~l~~~--~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~ 187 (235)
T 1zp2_A 110 SRSNISEIEFEIISVLDAFLIVH--HPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCN 187 (235)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCC--CTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHCCCcEEec--ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHh
Confidence 89999999999999999987654 4899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 285 ~g~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
++.+.+ .+.....++++.+|+.+|++|.+....
T Consensus 188 ~~~~~~-~~~~~~~~~~~~~i~~~~~~i~~ly~~ 220 (235)
T 1zp2_A 188 DENTIP-KLLDLIKSTDAFKVILCVQRIISIYYF 220 (235)
T ss_dssp CTTHHH-HHHHHCCHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCC-CCcchhhcCCHHHHHHHHHHHHHHHhh
Confidence 886543 233444489999999999999987554
No 6
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.89 E-value=5.1e-22 Score=195.27 Aligned_cols=182 Identities=16% Similarity=0.214 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCC----------
Q 046187 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV---------- 204 (510)
Q Consensus 135 a~~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~V---------- 204 (510)
+..-|.++|.+|+||+.++.+|..||++++..+.+++++...+++||||+|||.++.|++++||+.+++.
T Consensus 44 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~~ 123 (258)
T 2i53_A 44 GARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQF 123 (258)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGGG
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhhhh
Confidence 4467889999999999999999999999999999999999999999999999999999999999976431
Q ss_pred ---CHHHHHHHHHHHHHHhcccCCCCCcchhhhHHHHHhhcCCCH----HHHHHHHHHHHHHHhccccCCCChHHHHHHH
Q 046187 205 ---PQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNK----SAQVLATHIGEVVINKCFCTRRNPISISAAA 277 (510)
Q Consensus 205 ---skkeIgr~yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~----~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAa 277 (510)
.+++|.+..+.|.+.|+++..+. +|..|+.+|++.|+++. ++.+.|+.|++.+....++.+++|..|||||
T Consensus 124 ~~~~~~~i~~~E~~iL~~L~f~l~~~--~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAa 201 (258)
T 2i53_A 124 GDDPKEEVMVLERILLQTIKFDLQVE--HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAV 201 (258)
T ss_dssp CSCHHHHHHHHHHHHHHHTTTCCCCC--CHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHCCCceecc--ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHH
Confidence 36789999999999999987654 49999999999999986 6889999999999998999999999999999
Q ss_pred HHHHHHHcCCCCCHH-------HHHHH--hCCCHHHHHHHHHHHHHhhcc
Q 046187 278 IYLACQLEDKRKTQA-------EICKV--TGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 278 IYlAarl~g~~~t~k-------eIa~v--agVSe~TIRkrYKEL~e~l~~ 318 (510)
||+|++++|.+++.. .+... .++++.+|+.++++|.+....
T Consensus 202 i~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~ 251 (258)
T 2i53_A 202 MYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQ 251 (258)
T ss_dssp HHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhc
Confidence 999999999876542 23344 399999999999999986654
No 7
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.89 E-value=1.4e-21 Score=192.33 Aligned_cols=182 Identities=15% Similarity=0.196 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhC-----------
Q 046187 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAAN----------- 203 (510)
Q Consensus 135 a~~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~----------- 203 (510)
+..-|.++|.+|+||+.++.+|..||++++..+.+++++...+++||||+|||.++.|++++||+.+++
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~~~ 113 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLD 113 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCCCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCCCC
Confidence 446688899999999999999999999999999999999999999999999999999999999987652
Q ss_pred CC-------HHHHHHHHHHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHHHHHHHHHHHHHHH-hccccCCCChHHHHH
Q 046187 204 VP-------QKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVI-NKCFCTRRNPISISA 275 (510)
Q Consensus 204 Vs-------kkeIgr~yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~-~~~l~~GRsP~sIAA 275 (510)
+. +++|.+..+.|.+.|+++..+. +|..|+.+|++.++.+.++.+.|+.+++.+. ...++.+.+|..|||
T Consensus 114 ~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~--~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAa 191 (257)
T 2ivx_A 114 TKCDAYLQQTRELVILETIMLQTLGFEITIE--HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIAC 191 (257)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHTTTCCCCC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcccceEee--CcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHH
Confidence 11 7889999999999999987654 4999999999999999999999999998876 467788999999999
Q ss_pred HHHHHHHHHcCCCCCHH----HHHHHh--CCCHHHHHHHHHHHHHhhcc
Q 046187 276 AAIYLACQLEDKRKTQA----EICKVT--GLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 276 AaIYlAarl~g~~~t~k----eIa~va--gVSe~TIRkrYKEL~e~l~~ 318 (510)
||||+|++++|.++++. .+...+ ++++.+|++++++|.+....
T Consensus 192 Aai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~~~ 240 (257)
T 2ivx_A 192 VCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEK 240 (257)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999877642 366644 79999999999999987654
No 8
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=196.71 Aligned_cols=217 Identities=12% Similarity=0.069 Sum_probs=175.0
Q ss_pred hHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCC-CHHHHHHHhC--
Q 046187 129 MMDNLR--AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPR-TLQEISIAAN-- 203 (510)
Q Consensus 129 ~er~L~--a~~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~Pr-TLkEIa~vt~-- 203 (510)
.++.++ +..-|.++|.+|+||+.++.+|..||++++..+.+++++...+++||||+|||.+++|+ +++||..++.
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~ 117 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSV 117 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 344455 34677889999999999999999999999999999999999999999999999999998 7899987542
Q ss_pred --------------CCHHHHHHHHHHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCC
Q 046187 204 --------------VPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRN 269 (510)
Q Consensus 204 --------------VskkeIgr~yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRs 269 (510)
..+++|.+..+.|.+.|+++..+. +|..||.+|++.|+++.++.+.|+.+++.+....++.++.
T Consensus 118 ~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~--~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~ 195 (285)
T 3rgf_B 118 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVY--HPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYP 195 (285)
T ss_dssp HHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCC--CSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSC
T ss_pred HcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeC--ChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccC
Confidence 467899999999999999987664 4899999999999999999999999999999888999999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc--cCCCCCCCCCCCCccCCCchhccCCCCcc
Q 046187 270 PISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDD--LLPSNYTPAVPPEKAFPTTTITSGRAPTV 347 (510)
Q Consensus 270 P~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~--Lip~~~~~~~~i~~~~p~~~~~~~~~~~~ 347 (510)
|..||+||||+|+++++.+. ..+...+++++..|+.++++|.+.... .+++.= .-..+..++|.+-.+..|+.+.
T Consensus 196 Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~~il~ly~~~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~ 272 (285)
T 3rgf_B 196 PFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK-EMATILSKMPKPKPPPNSEGEQ 272 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHSCCCCCCC------
T ss_pred HHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHHHHHHHHHhcccCchhh-hHHHHHHhCCCCCCCCCCCCCC
Confidence 99999999999999998754 578899999999999999998876553 212110 0012455666666555555554
Q ss_pred ccC
Q 046187 348 KVD 350 (510)
Q Consensus 348 ~~~ 350 (510)
..+
T Consensus 273 ~~~ 275 (285)
T 3rgf_B 273 GPN 275 (285)
T ss_dssp ---
T ss_pred CCC
Confidence 433
No 9
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.86 E-value=4.1e-21 Score=191.14 Aligned_cols=181 Identities=14% Similarity=0.125 Sum_probs=167.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--CCHHHHHHHH
Q 046187 137 LQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQE-PRTLQEISIAAN--VPQKEIGKYI 213 (510)
Q Consensus 137 ~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~-PrTLkEIa~vt~--VskkeIgr~y 213 (510)
.-|.+++..++|++.+...|..+|++++....+++++...+++||+|+|||.++. |++++||+.+++ .++++|.+..
T Consensus 43 ~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE 122 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQME 122 (269)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHH
Confidence 4477899999999999999999999999999999999999999999999999888 899999999884 7999999999
Q ss_pred HHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHH
Q 046187 214 KILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAE 293 (510)
Q Consensus 214 k~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~ke 293 (510)
+.|.+.|+...... +|.+|+.||++.++++.++...|+.|++.+.....+.+++|..|||||||+|++++|.+.+.++
T Consensus 123 ~~IL~~L~f~l~~~--tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~ 200 (269)
T 2b9r_A 123 MKILRALNFGLGRP--LPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPT 200 (269)
T ss_dssp HHHHHHTTSCCCCC--CHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTT
T ss_pred HHHHHHcCCccCCC--CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 99999999887654 4899999999999999999999999999988888889999999999999999999998888889
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhhccc
Q 046187 294 ICKVTGLTEVTLRKVYKELLENWDDL 319 (510)
Q Consensus 294 Ia~vagVSe~TIRkrYKEL~e~l~~L 319 (510)
+...+|+++.+|+.+|++|.+.+...
T Consensus 201 l~~~tg~~~~~l~~~~~~l~~~~~~~ 226 (269)
T 2b9r_A 201 LQHYLSYTEESLLPVMQHLAKNVVMV 226 (269)
T ss_dssp HHHHSCCCSSTTTTHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999877653
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.85 E-value=2.7e-20 Score=184.09 Aligned_cols=181 Identities=15% Similarity=0.182 Sum_probs=163.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--CCHHHHHHH
Q 046187 136 YLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQE-PRTLQEISIAAN--VPQKEIGKY 212 (510)
Q Consensus 136 ~~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~-PrTLkEIa~vt~--VskkeIgr~ 212 (510)
..-|.+++..++|+..+.-.|..++++++....+..++...+++||||+|||.++. |++++||+.+++ .++++|.+.
T Consensus 43 vdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~m 122 (260)
T 2cch_B 43 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHH
Confidence 34577899999999999999999999999988888888999999999999999999 999999999874 889999999
Q ss_pred HHHHHHHhcccCCCCCcchhhhHHHHHhhcCCCH-HHHHHHHHHHHHHHhccc-cCCCChHHHHHHHHHHHHHHcCCCCC
Q 046187 213 IKILGEALQLSQPINSNSIAVHMPRFCTLLQLNK-SAQVLATHIGEVVINKCF-CTRRNPISISAAAIYLACQLEDKRKT 290 (510)
Q Consensus 213 yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~-~V~~~A~~Ia~~a~~~~l-~~GRsP~sIAAAaIYlAarl~g~~~t 290 (510)
.+.|.+.|+...... +|.+|+.+|++.++++. ++...|+.+++.+..... +.+++|..|||||||+|+++++.+.+
T Consensus 123 E~~iL~~L~~~l~~~--tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w 200 (260)
T 2cch_B 123 EHLVLKVLTFDLAAP--TVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSW 200 (260)
T ss_dssp HHHHHHHTTTCCCCC--CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHcCCccCCC--CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcc
Confidence 999999999887654 49999999999999876 889999999998764444 78999999999999999999988888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 291 QAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 291 ~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
.++++..+|+++.+|+.+|++|.+....
T Consensus 201 ~~~l~~~~g~~~~~i~~~~~~l~~~~~~ 228 (260)
T 2cch_B 201 PESLIRKTGYTLESLKPCLMDLHQTYLK 228 (260)
T ss_dssp CHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhCcCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999997654
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.84 E-value=5.1e-21 Score=198.39 Aligned_cols=182 Identities=15% Similarity=0.188 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhC-----------
Q 046187 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAAN----------- 203 (510)
Q Consensus 135 a~~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~----------- 203 (510)
...-|.+++.+|+||+.++.+|..||++++..+.+++++...+++||||+|||.++.|++++||+.++.
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~~~ 120 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPD 120 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCCCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccccccc
Confidence 446788899999999999999999999999999999999999999999999999999999999986542
Q ss_pred C-------CHHHHHHHHHHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHHHHHHHHHHHHHHH-hccccCCCChHHHHH
Q 046187 204 V-------PQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVI-NKCFCTRRNPISISA 275 (510)
Q Consensus 204 V-------skkeIgr~yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~-~~~l~~GRsP~sIAA 275 (510)
+ .+++|.+..+.|.+.|+++..+. +|..||.+|++.|+++.++.+.|+.|++.+. ...++.+..|..|||
T Consensus 121 ~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~--~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAa 198 (358)
T 2pk2_A 121 TRSEAYLQQVQDLVILESIILQTLGFELTID--HPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVAC 198 (358)
T ss_dssp TTSHHHHGGGTGGGTHHHHHHHHTTTCCCCC--CTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTT
T ss_pred ccchhhhHHHHHHHHHHHHHHHHcCCceeCC--CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHH
Confidence 1 26788999999999999987654 4899999999999999999999999998886 456778999999999
Q ss_pred HHHHHHHHHcCCCCCHH----HHHHHh--CCCHHHHHHHHHHHHHhhcc
Q 046187 276 AAIYLACQLEDKRKTQA----EICKVT--GLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 276 AaIYlAarl~g~~~t~k----eIa~va--gVSe~TIRkrYKEL~e~l~~ 318 (510)
||||+|+++++.++++. .+..++ +|++.+|++++++|.+.++.
T Consensus 199 AAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y~~ 247 (358)
T 2pk2_A 199 VCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEK 247 (358)
T ss_dssp TTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999876643 366664 78999999999999987754
No 12
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.83 E-value=1.8e-19 Score=179.18 Aligned_cols=184 Identities=11% Similarity=0.116 Sum_probs=161.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--CCHHHHHHHH
Q 046187 137 LQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQE-PRTLQEISIAAN--VPQKEIGKYI 213 (510)
Q Consensus 137 ~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~-PrTLkEIa~vt~--VskkeIgr~y 213 (510)
.-|.+++..++|+..+.-.|..++++++....+..++...+++||+|+|||.++. |++++||+.+++ .++++|.+..
T Consensus 62 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE 141 (271)
T 2w96_A 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQME 141 (271)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 3477899999999999999999999999998889999999999999999999998 999999999864 7899999999
Q ss_pred HHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHHH----HHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCC--
Q 046187 214 KILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSA----QVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK-- 287 (510)
Q Consensus 214 k~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~V----~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~-- 287 (510)
+.|.+.|++..... +|..|+.+|++.|+++.+. .+.|+.+++.+.....+.+.+|..|||||||+|.+.++.
T Consensus 142 ~~IL~~L~~~l~~~--tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~ 219 (271)
T 2w96_A 142 LLLVNKLKWNLAAM--TPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRS 219 (271)
T ss_dssp HHHHHHTTTCCCCC--CHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCccCCC--CHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCC
Confidence 99999999887654 4999999999999998754 356788887776555567999999999999999987753
Q ss_pred -------CCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccCCC
Q 046187 288 -------RKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPS 322 (510)
Q Consensus 288 -------~~t~keIa~vagVSe~TIRkrYKEL~e~l~~Lip~ 322 (510)
..++++++.++|+++.+|+.+|++|.+.++.-+..
T Consensus 220 ~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~~~ 261 (271)
T 2w96_A 220 PNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLRQ 261 (271)
T ss_dssp TTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTTTTS
T ss_pred CCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 12467899999999999999999999998876543
No 13
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.80 E-value=3.7e-18 Score=174.48 Aligned_cols=180 Identities=11% Similarity=0.036 Sum_probs=150.7
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCC-------HH
Q 046187 137 LQIIDVASILG--LDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVP-------QK 207 (510)
Q Consensus 137 ~~I~~ic~~L~--LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~Vs-------kk 207 (510)
..|.++|.+|+ ||+.++.+|..||++++..+.+++.+...+++||||+|||.++.|++++||+..+..+ ++
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~~~~~ 141 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALE 141 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhHHHHH
Confidence 67788999999 9999999999999999999999999999999999999999999999999998877655 57
Q ss_pred HHHHHHHHHHHHhcccCCCCCcchhhhHHHHHhhc-----CC--CHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHH
Q 046187 208 EIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLL-----QL--NKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYL 280 (510)
Q Consensus 208 eIgr~yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L-----~L--~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYl 280 (510)
+|.+..+.|.+.|+++..+. +|..||.+|+..| ++ +..+.+.|+.+++.+....++.+..|..|||||||+
T Consensus 142 ~Il~~E~~iL~~L~f~l~v~--~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~l 219 (323)
T 1jkw_A 142 QILEYELLLIQQLNFHLIVH--NPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILS 219 (323)
T ss_dssp HHHHHHHHHHHHTTTCCCCC--CSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcEEcC--ChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHH
Confidence 89999999999999987664 4899999999776 33 356889999999999888888899999999999999
Q ss_pred HHHHcCCCCCH--HHHHH--HhCCCHHHHHHHHHHHHHhhcc
Q 046187 281 ACQLEDKRKTQ--AEICK--VTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 281 Aarl~g~~~t~--keIa~--vagVSe~TIRkrYKEL~e~l~~ 318 (510)
|++++|.+++. .++.. ..+.+..-|....++|...+..
T Consensus 220 A~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~ 261 (323)
T 1jkw_A 220 SASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKK 261 (323)
T ss_dssp HHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHc
Confidence 99999876542 22211 1234556666666666555443
No 14
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.79 E-value=3.3e-18 Score=168.86 Aligned_cols=181 Identities=14% Similarity=0.065 Sum_probs=159.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--CCHHHHHHHH
Q 046187 137 LQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQE-PRTLQEISIAAN--VPQKEIGKYI 213 (510)
Q Consensus 137 ~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~-PrTLkEIa~vt~--VskkeIgr~y 213 (510)
.-|.+++..++|+..+.-.|..|+++++..+.+++++...+++||+|||||.++. |++++|++.+++ .++++|.+..
T Consensus 56 dwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 135 (257)
T 1g3n_C 56 TWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQE 135 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHH
Confidence 4566899999999999999999999999999999999999999999999998776 999999999875 7899999999
Q ss_pred HHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHH----HHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCC--
Q 046187 214 KILGEALQLSQPINSNSIAVHMPRFCTLLQLNKS----AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK-- 287 (510)
Q Consensus 214 k~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~----V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~-- 287 (510)
+.|.+.|+...... +|..|+.+|++.++++.+ +...|+.+++.+.....+.+.+|..|||||||+|.+.++.
T Consensus 136 ~~iL~~L~~~l~~~--tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~ 213 (257)
T 1g3n_C 136 KELLEKLAWRTEAV--LATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQ 213 (257)
T ss_dssp HHHHHHTTTCCCCC--CHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC
T ss_pred HHHHHHCCCcCCCC--CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCc
Confidence 99999999887654 499999999999998753 4567888888777666678999999999999999998874
Q ss_pred ----CCCHHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q 046187 288 ----RKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319 (510)
Q Consensus 288 ----~~t~keIa~vagVSe~TIRkrYKEL~e~l~~L 319 (510)
+...++++..+|+++.+|+.+++.|.+.+...
T Consensus 214 ~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~~ 249 (257)
T 1g3n_C 214 DTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSDF 249 (257)
T ss_dssp -----CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHC
Confidence 34578899999999999999999999987654
No 15
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.78 E-value=9.5e-18 Score=165.27 Aligned_cols=180 Identities=11% Similarity=0.120 Sum_probs=157.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcC-CCCCHHHHHHHhC--CCHHHHHHHH
Q 046187 137 LQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ-EPRTLQEISIAAN--VPQKEIGKYI 213 (510)
Q Consensus 137 ~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~-~PrTLkEIa~vt~--VskkeIgr~y 213 (510)
.-|.+++..++|+..+.-.|..|+++++..+.+++++...+++||+|||||.++ .|++++|++.+++ .++++|.+..
T Consensus 57 dwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 136 (254)
T 2f2c_A 57 TWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQE 136 (254)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 446689999999999999999999999999999999999999999999999977 5999999988764 7899999999
Q ss_pred HHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHH----HHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcC-CC
Q 046187 214 KILGEALQLSQPINSNSIAVHMPRFCTLLQLNKS----AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLED-KR 288 (510)
Q Consensus 214 k~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~----V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g-~~ 288 (510)
+.|.+.|+...... +|..|+.+|++.++++.+ +...|+.+++.+.....+.+.+|..|||||||+|.+..+ .+
T Consensus 137 ~~IL~~L~~~l~~~--tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~ 214 (254)
T 2f2c_A 137 KDILEALKWDTEAV--LATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNC 214 (254)
T ss_dssp HHHHHHTTTCCCCC--CGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHCCCcCCCC--CHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCC
Confidence 99999999887653 489999999999999754 356788888877666667899999999999999999863 34
Q ss_pred CC----HHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 289 KT----QAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 289 ~t----~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
.+ .++++..+|+++.+|+.+|+.|.+.+..
T Consensus 215 ~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~ 248 (254)
T 2f2c_A 215 RPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSL 248 (254)
T ss_dssp CCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 55 7899999999999999999999988754
No 16
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.73 E-value=8.7e-17 Score=161.25 Aligned_cols=174 Identities=13% Similarity=0.138 Sum_probs=149.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhC-CccCCccHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--CCHHHHHHH
Q 046187 137 LQIIDVASILGLDYDICDHAFQLFRDCCSA-TCLRNRSVEALATAALVQAIREAQE-PRTLQEISIAAN--VPQKEIGKY 212 (510)
Q Consensus 137 ~~I~~ic~~L~LP~~VidtA~~LyK~a~e~-~~lrGRs~eaVaAACLYIACR~~~~-PrTLkEIa~vt~--VskkeIgr~ 212 (510)
.-|.+++..++|+..+.-.|..++++++.. +.+++++...+++||+|+|||.++. |++++||+.+++ .++++|.+.
T Consensus 55 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~m 134 (283)
T 1w98_B 55 DWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTM 134 (283)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHH
Confidence 347789999999999999999999999997 6788999999999999999999987 999999999874 789999999
Q ss_pred HHHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHH-----------HHHHHHHHHHHHHhccccCCCChHHHHHHHHHHH
Q 046187 213 IKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKS-----------AQVLATHIGEVVINKCFCTRRNPISISAAAIYLA 281 (510)
Q Consensus 213 yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~-----------V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlA 281 (510)
.+.|.+.|+....+. +|..|+.+|++.+++++. ....+..+++.+.....+.+.+|..|||||||+|
T Consensus 135 E~~IL~~L~~~l~~~--tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la 212 (283)
T 1w98_B 135 ELMIMKALKWRLSPL--TIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHF 212 (283)
T ss_dssp HHHHHHHTTTCCCCC--CHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcCCCC--CHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHH
Confidence 999999999887653 499999999999887532 2233555666665445578999999999999998
Q ss_pred HHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q 046187 282 CQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319 (510)
Q Consensus 282 arl~g~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~L 319 (510)
+ ..+.+..++|+++.+|+.+|++|.+....+
T Consensus 213 ~-------~~~~l~~~tg~~~~~i~~c~~~l~~~~~~~ 243 (283)
T 1w98_B 213 S-------SSELMQKVSGYQWCDIENCVKWMVPFAMVI 243 (283)
T ss_dssp S-------CHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred H-------ChHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5 278899999999999999999998877654
No 17
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.73 E-value=1.8e-16 Score=160.81 Aligned_cols=185 Identities=13% Similarity=0.129 Sum_probs=157.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcC-CCCCHHHHHHHhC--CCHHHHHHHH
Q 046187 137 LQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ-EPRTLQEISIAAN--VPQKEIGKYI 213 (510)
Q Consensus 137 ~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~-~PrTLkEIa~vt~--VskkeIgr~y 213 (510)
.-|.+++..++|++.+.-.|..||++++....++......++++|+|||||.++ .|.+++|++.+++ .++++|.+..
T Consensus 76 dwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE 155 (306)
T 3g33_B 76 YWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWE 155 (306)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHH
Confidence 456689999999999999999999999999889999999999999999999855 5889999999875 7899999999
Q ss_pred HHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHH----HHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCC
Q 046187 214 KILGEALQLSQPINSNSIAVHMPRFCTLLQLNKS----AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK 289 (510)
Q Consensus 214 k~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~----V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~ 289 (510)
+.|.+.|+...... .|..||.+|+..|+++.+ +.+.|+.+++.+.....+.+.+|..|||||||+|.+.++...
T Consensus 156 ~~IL~~L~f~l~~~--tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~ 233 (306)
T 3g33_B 156 VLVLGKLKWDLAAV--IAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACS 233 (306)
T ss_dssp HHHHHHTTTCCCCC--CGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHcCCccCCC--CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999887654 489999999999988742 567788888877777778899999999999999999887543
Q ss_pred C-----HHHHHHHhCCCHHHHHHHHHHHHHhhcccCCCC
Q 046187 290 T-----QAEICKVTGLTEVTLRKVYKELLENWDDLLPSN 323 (510)
Q Consensus 290 t-----~keIa~vagVSe~TIRkrYKEL~e~l~~Lip~~ 323 (510)
. ...++..+|+++.+|+.+++.|.+.+..-+...
T Consensus 234 ~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l~~~ 272 (306)
T 3g33_B 234 MSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREA 272 (306)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC----
T ss_pred CchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 357889999999999999999999998865443
No 18
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.3e-15 Score=140.14 Aligned_cols=65 Identities=14% Similarity=0.350 Sum_probs=54.9
Q ss_pred CCCCCCCCC-CCcccccCCCCccccccccceecccceeecccccccccCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 046187 1 MKCPYCSAA-QGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQ 77 (510)
Q Consensus 1 m~Cp~C~~~-~~~i~D~~~Gd~~~VC~~CG~Vleer~Id~~~EwR~fs~d~~~~~~~~d~p~~~~d~sRvg~~~dP~l 77 (510)
++||+|++. +.+++|+.+|+ +||.+||+||+|++||.++|||.|++++ + ...+++|+|++.+++.
T Consensus 22 ~~CPECGs~~t~IV~D~erGE--~VCsdCGLVLEEriID~GPEWRAFsnDD----~------~~dDpSRVGAPs~~~~ 87 (197)
T 3k1f_M 22 LTCPECKVYPPKIVERFSEGD--VVCALCGLVLSDKLVDTRSEWRTFSNXX----X------XXXXXXXXXXXXXXXX 87 (197)
T ss_dssp CCCTTTCCSSCCEEEEGGGTE--EEETTTCBBCCCCCBCHHHHHHHHHCCC----T------TTTCSCCCBCCBCCHH
T ss_pred eECcCCCCcCCeEEEeCCCCE--EEEcCCCCCcCCceeECCCCCcCcCCcc----c------cccccccccccccccc
Confidence 479999984 44668999998 9999999999999999999999999874 1 2446799999877654
No 19
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.49 E-value=8.8e-15 Score=114.31 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCcccccCCCCccccccccceecccceeecccccccccCC
Q 046187 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQD 49 (510)
Q Consensus 1 m~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vleer~Id~~~EwR~fs~d 49 (510)
|+||+|+..+ +++|+++|+ +||..||+||+|++||.++|||+|+++
T Consensus 12 ~~Cp~C~~~~-lv~D~~~ge--~vC~~CGlVl~e~~iD~gpEWR~F~~~ 57 (58)
T 1dl6_A 12 VTCPNHPDAI-LVEDYRAGD--MICPECGLVVGDRVIDVGSEWRTFSND 57 (58)
T ss_dssp CSBTTBSSSC-CEECSSSCC--EECTTTCCEECCSCCCCCCSCCCSCCC
T ss_pred ccCcCCCCCc-eeEeCCCCe--EEeCCCCCEEeccccccCCcccccCCC
Confidence 6899999855 668999998 999999999999999999999999986
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.41 E-value=1.3e-12 Score=123.57 Aligned_cols=90 Identities=24% Similarity=0.243 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 136 YLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKI 215 (510)
Q Consensus 136 ~~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~ 215 (510)
+.-|.++|..|+|++.+.+.|.+|++++.+.+++.||++..+||||||+|||..+.++|++||+.+++|++.+|+++|+.
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~ 188 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKE 188 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCC
Q 046187 216 LGEALQLSQP 225 (510)
Q Consensus 216 L~k~L~i~~p 225 (510)
|.+.|++..+
T Consensus 189 l~~~l~~~~~ 198 (200)
T 1ais_B 189 LVEKLKIKVP 198 (200)
T ss_dssp HHHHHTCCCC
T ss_pred HHHHcCCCCC
Confidence 9999997654
No 21
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.28 E-value=2.7e-10 Score=112.69 Aligned_cols=178 Identities=12% Similarity=0.053 Sum_probs=144.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--CCHHHHHHHHH
Q 046187 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQE-PRTLQEISIAAN--VPQKEIGKYIK 214 (510)
Q Consensus 138 ~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~-PrTLkEIa~vt~--VskkeIgr~yk 214 (510)
=|.+++..++|...+.-.|..++.+++....++......++++|+|||+|.++. |.++++++..++ .++++|.+.-+
T Consensus 55 Wl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~ 134 (252)
T 1f5q_B 55 WMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEV 134 (252)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 366799999999999999999999999988777778889999999999997765 889999998774 68899999999
Q ss_pred HHHHHhcccCCCCCcchhhhHHHHHhhcCCCHH----HHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCC
Q 046187 215 ILGEALQLSQPINSNSIAVHMPRFCTLLQLNKS----AQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKT 290 (510)
Q Consensus 215 ~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~----V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t 290 (510)
.|.+.|+...... .|..|+.+|...++++.+ +...|..++..+.-..-+...+|+.|||||++++. .+...+
T Consensus 135 ~IL~~L~w~l~~p--Tp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l--~~~~~~ 210 (252)
T 1f5q_B 135 KSLDTLSWVADRC--LSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM--NQKYDY 210 (252)
T ss_dssp HHHHHTTTCCCCC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH--TTTCHH
T ss_pred HHHHHCCCccCCC--CHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh--ccCCCc
Confidence 9999999886654 489999999999999864 44567776666654444567999999999965443 222222
Q ss_pred ----HHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q 046187 291 ----QAEICKVTGLTEVTLRKVYKELLENWDDL 319 (510)
Q Consensus 291 ----~keIa~vagVSe~TIRkrYKEL~e~l~~L 319 (510)
...++..+|++...++..++.|.+.+...
T Consensus 211 ~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~ 243 (252)
T 1f5q_B 211 YENRIDGVCKSLYITKEELHQCCDLVDIAIVSF 243 (252)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 34578889999999999999999887544
No 22
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.18 E-value=9.5e-11 Score=111.51 Aligned_cols=91 Identities=22% Similarity=0.135 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 135 AYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIK 214 (510)
Q Consensus 135 a~~~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk 214 (510)
.+.-|.++|..|++++.+.+.|..+++.+.+..++.|+++..+||||||+|||..+.+++.+||+.+++|+..+|+++|+
T Consensus 102 p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~ 181 (207)
T 1c9b_A 102 TGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYR 181 (207)
T ss_dssp THHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCC
Q 046187 215 ILGEALQLSQP 225 (510)
Q Consensus 215 ~L~k~L~i~~p 225 (510)
.|.+.++...|
T Consensus 182 ~l~~~l~~~~p 192 (207)
T 1c9b_A 182 LIYPRAPDLFP 192 (207)
T ss_dssp HHGGGHHHHSC
T ss_pred HHHHHHHHhCh
Confidence 99999886553
No 23
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=99.17 E-value=7.5e-12 Score=94.42 Aligned_cols=44 Identities=25% Similarity=0.435 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCcccccCCCCccccccccceecccceeeccccccccc
Q 046187 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRA 47 (510)
Q Consensus 1 m~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vleer~Id~~~EwR~fs 47 (510)
+.||+|++. ..++|+.+|. +||..||+|+++++||.++|||+|+
T Consensus 6 ~~CP~C~~~-~l~~d~~~ge--lvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 6 KVCPACESA-ELIYDPERGE--IVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp CSCTTTSCC-CEEEETTTTE--EEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred EeCcCCCCc-ceEEcCCCCe--EECcccCCcccccccccCCcccccC
Confidence 479999884 4558999998 9999999999999999999999996
No 24
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.98 E-value=1.3e-09 Score=112.48 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=83.0
Q ss_pred hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 231 IAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 231 p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYK 310 (510)
....|.++|+.|+|+..|...|..|.+++.+..++.||+..+|||||||+|||..+.+++++||+++++|+...|.+.|+
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~keigr~~k 208 (345)
T 4bbr_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLN 208 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccc
Q 046187 311 ELLENWDDL 319 (510)
Q Consensus 311 EL~e~l~~L 319 (510)
.|.+.+...
T Consensus 209 ~l~~~L~l~ 217 (345)
T 4bbr_M 209 IMKNILRGK 217 (345)
T ss_dssp HHHHCC---
T ss_pred HHHHHhCcc
Confidence 999998853
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.4e-08 Score=104.61 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=83.1
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKE 311 (510)
..+|.++|..|+|+..+...|..|.+++....++.||+...|||||||+||+..+.+++++||+.+++|+...|.+.|+.
T Consensus 130 ~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v~~keIgr~~~~ 209 (345)
T 3k7a_M 130 FAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLNI 209 (345)
T ss_dssp HHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 046187 312 LLENWDD 318 (510)
Q Consensus 312 L~e~l~~ 318 (510)
|.+.+..
T Consensus 210 l~~~L~~ 216 (345)
T 3k7a_M 210 MKNILRG 216 (345)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 9999883
No 26
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=98.05 E-value=2.9e-05 Score=75.12 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=79.5
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCC-CChHHHHHHHHHHHHHHcCCCCCHHHHHHHh--------CCCH
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTR-RNPISISAAAIYLACQLEDKRKTQAEICKVT--------GLTE 302 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~G-RsP~sIAAAaIYlAarl~g~~~t~keIa~va--------gVSe 302 (510)
.++|.+++.+|+|+..+...|..+.++......+.+ +++..|++||||+||++.+.+++++||+.++ ..+.
T Consensus 32 ~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~~ 111 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSR 111 (235)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhccH
Confidence 478999999999999999999999998877777777 9999999999999999999999999999887 5789
Q ss_pred HHHHHHHHHHHHhhcc
Q 046187 303 VTLRKVYKELLENWDD 318 (510)
Q Consensus 303 ~TIRkrYKEL~e~l~~ 318 (510)
..|.+.++.|++.++-
T Consensus 112 ~~I~~~E~~iL~~L~f 127 (235)
T 1zp2_A 112 SNISEIEFEIISVLDA 127 (235)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999999999874
No 27
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=97.62 E-value=0.00082 Score=64.37 Aligned_cols=142 Identities=17% Similarity=0.116 Sum_probs=96.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCc---cHHHHHHHHHHHHHHhcCCCCCHHHHHHHh-CCCHHHHHHHH
Q 046187 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNR---SVEALATAALVQAIREAQEPRTLQEISIAA-NVPQKEIGKYI 213 (510)
Q Consensus 138 ~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGR---s~eaVaAACLYIACR~~~~PrTLkEIa~vt-~VskkeIgr~y 213 (510)
.|..+-.+-.+|+.|++.|.+|.+.+...+--+|. ++..|+|||+.||..+.+.|+++.|+--+- .+..-++++.
T Consensus 18 clr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~lD~sL~Dvelrr~- 96 (260)
T 3h4c_A 18 CMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCLDSSLGDVELRRA- 96 (260)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHCTTCCCHHHHHH-
T ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHHhhhhhHHHHHHH-
Confidence 34446666789999999999999999876555554 456899999999999999999999986642 2334444444
Q ss_pred HHHHHHhcccCCC---CCcchhhhHHHHHhhcCCCHH-HHHHHHHHHHHHHhccccCCCChHHHHHHHHHHH
Q 046187 214 KILGEALQLSQPI---NSNSIAVHMPRFCTLLQLNKS-AQVLATHIGEVVINKCFCTRRNPISISAAAIYLA 281 (510)
Q Consensus 214 k~L~k~L~i~~pv---~~~~p~~~I~Rfcs~L~L~~~-V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlA 281 (510)
.|.+++++.... ...-...+|..|..+|+|.-. -..-|.+++..+....-+.|.--.-=..-++++|
T Consensus 97 -Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s~Y~p~C~rL~~ai~~ve~LA~~~~~drii~AlLLA 167 (260)
T 3h4c_A 97 -DIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVSLYLPHCKRLLTALGRVEALAGLTVADRVTTALLLA 167 (260)
T ss_dssp -HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHHH
T ss_pred -HHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566777654211 001135788999999999843 3456777777766655555554433333444444
No 28
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.50 E-value=0.00034 Score=68.09 Aligned_cols=87 Identities=16% Similarity=0.058 Sum_probs=74.1
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhC--CC--------
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG--LT-------- 301 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vag--VS-------- 301 (510)
.++|.+++.+|+|+..+...|..++++......+.++++.-||+||||+||++.+.++++++|..++. ++
T Consensus 45 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~~~ 124 (258)
T 2i53_A 45 ARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFG 124 (258)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGGGC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhhhhh
Confidence 46899999999999999999999999988777788999999999999999999999999999987654 22
Q ss_pred ---HHHHHHHHHHHHHhhcc
Q 046187 302 ---EVTLRKVYKELLENWDD 318 (510)
Q Consensus 302 ---e~TIRkrYKEL~e~l~~ 318 (510)
...|.+..+.|++.++-
T Consensus 125 ~~~~~~i~~~E~~iL~~L~f 144 (258)
T 2i53_A 125 DDPKEEVMVLERILLQTIKF 144 (258)
T ss_dssp SCHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 44667777777777764
No 29
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=97.45 E-value=0.00082 Score=65.53 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=75.0
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhC-----------C
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG-----------L 300 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vag-----------V 300 (510)
.++|.+++.+|+|+..+..+|..+.++......+.++++..|++||||+||+..+.++++++|..++. +
T Consensus 35 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~~~~ 114 (257)
T 2ivx_A 35 ANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDT 114 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCCCCT
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCCCCc
Confidence 57899999999999999999999999988777889999999999999999999999999999987763 2
Q ss_pred C-------HHHHHHHHHHHHHhhcc
Q 046187 301 T-------EVTLRKVYKELLENWDD 318 (510)
Q Consensus 301 S-------e~TIRkrYKEL~e~l~~ 318 (510)
+ ...|.+..+.|++.++-
T Consensus 115 ~~~~y~~~~~~I~~~E~~iL~~L~f 139 (257)
T 2ivx_A 115 KCDAYLQQTRELVILETIMLQTLGF 139 (257)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHccc
Confidence 3 45677777777777764
No 30
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=97.42 E-value=0.00064 Score=69.17 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=76.0
Q ss_pred hhhHHHHHhhcC--CCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCC-------H
Q 046187 232 AVHMPRFCTLLQ--LNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT-------E 302 (510)
Q Consensus 232 ~~~I~Rfcs~L~--L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vagVS-------e 302 (510)
..+|.++|.+|+ |+..+..+|..+.++......+.+++|..|++||||+||++.+.++++++|+.++... .
T Consensus 61 ~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~~~~ 140 (323)
T 1jkw_A 61 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKAL 140 (323)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhHHHH
Confidence 467889999999 9999999999999999888888999999999999999999999999999998877655 3
Q ss_pred HHHHHHHHHHHHhhcc
Q 046187 303 VTLRKVYKELLENWDD 318 (510)
Q Consensus 303 ~TIRkrYKEL~e~l~~ 318 (510)
..|.+....|++.++-
T Consensus 141 ~~Il~~E~~iL~~L~f 156 (323)
T 1jkw_A 141 EQILEYELLLIQQLNF 156 (323)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCC
Confidence 5677778888887774
No 31
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.35 E-value=0.0013 Score=65.61 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=75.8
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCC-CHHHHHHHhC-----------
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRK-TQAEICKVTG----------- 299 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~-t~keIa~vag----------- 299 (510)
.++|.+++.+|+|+..+..+|..+.++......+.++++..||+||||+||+..+..+ +.++|..++.
T Consensus 47 ~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~ 126 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAF 126 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccC
Confidence 5789999999999999999999999998887888999999999999999999998876 6888876552
Q ss_pred -----CCHHHHHHHHHHHHHhhcc
Q 046187 300 -----LTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 300 -----VSe~TIRkrYKEL~e~l~~ 318 (510)
.+...|.+..+.|++.++-
T Consensus 127 ~~~~~~~~~~Il~~E~~iL~~L~f 150 (285)
T 3rgf_B 127 PKEFPYRMNHILECEFYLLELMDC 150 (285)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHHHcCC
Confidence 4667888888888888874
No 32
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=97.13 E-value=0.0026 Score=62.75 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=79.1
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCC-CCCHHHHHHHhC--CCHHHHHHH
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK-RKTQAEICKVTG--LTEVTLRKV 308 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~-~~t~keIa~vag--VSe~TIRkr 308 (510)
.++|..++.+++|+.++...|..++++.....-+.++++.-|++||+|+||+..+. ..+.+|++.+++ .+...|.+.
T Consensus 42 v~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~m 121 (269)
T 2b9r_A 42 IDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQM 121 (269)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHH
Confidence 46788999999999999999999999998877788999999999999999999886 678999999985 799999999
Q ss_pred HHHHHHhhcc
Q 046187 309 YKELLENWDD 318 (510)
Q Consensus 309 YKEL~e~l~~ 318 (510)
.+.|.+.++-
T Consensus 122 E~~IL~~L~f 131 (269)
T 2b9r_A 122 EMKILRALNF 131 (269)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHcCC
Confidence 9999999874
No 33
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=96.96 E-value=0.004 Score=61.29 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=77.1
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCC-CCCHHHHHHHhC--CCHHHHHHH
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK-RKTQAEICKVTG--LTEVTLRKV 308 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~-~~t~keIa~vag--VSe~TIRkr 308 (510)
.++|.+.+.+++++.++...|..++++.....-+..+++.-|++||+|+||++.+. +.+.++++.+++ .+...|.+.
T Consensus 61 v~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~m 140 (271)
T 2w96_A 61 ATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQM 140 (271)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHH
Confidence 36788888999999889999999998888776678899999999999999999987 889999998865 899999999
Q ss_pred HHHHHHhhcc
Q 046187 309 YKELLENWDD 318 (510)
Q Consensus 309 YKEL~e~l~~ 318 (510)
.+.|.+.++-
T Consensus 141 E~~IL~~L~~ 150 (271)
T 2w96_A 141 ELLLVNKLKW 150 (271)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHCCC
Confidence 9999999984
No 34
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=96.94 E-value=0.0015 Score=67.47 Aligned_cols=87 Identities=18% Similarity=0.093 Sum_probs=72.8
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhC-----------C
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG-----------L 300 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vag-----------V 300 (510)
.++|.+++.+|+|+.++..+|..++++......+.++++.-||+||||+||++.+.++++++|..++. +
T Consensus 42 v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~~~~ 121 (358)
T 2pk2_A 42 ANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDT 121 (358)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCCCCT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccccccccc
Confidence 57899999999999999999999999988877888999999999999999999999999999886542 2
Q ss_pred C-------HHHHHHHHHHHHHhhcc
Q 046187 301 T-------EVTLRKVYKELLENWDD 318 (510)
Q Consensus 301 S-------e~TIRkrYKEL~e~l~~ 318 (510)
+ ...|.+..+.|++.|+-
T Consensus 122 ~~~~y~~~~~~Il~~E~~IL~~L~f 146 (358)
T 2pk2_A 122 RSEAYLQQVQDLVILESIILQTLGF 146 (358)
T ss_dssp TSHHHHGGGTGGGTHHHHHHHHTTT
T ss_pred cchhhhHHHHHHHHHHHHHHHHcCC
Confidence 2 23455666677777764
No 35
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=96.92 E-value=0.0036 Score=61.31 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=78.0
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCC-CCCHHHHHHHhC--CCHHHHHHH
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK-RKTQAEICKVTG--LTEVTLRKV 308 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~-~~t~keIa~vag--VSe~TIRkr 308 (510)
.++|..++.+++|+.++...|..++++.....-+..++..-|++||+|+||+..+. ..+.+|+..+++ .+...|.+.
T Consensus 43 vdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~m 122 (260)
T 2cch_B 43 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHH
Confidence 47888999999999999999999998888766677788999999999999999987 788999999885 889999999
Q ss_pred HHHHHHhhcc
Q 046187 309 YKELLENWDD 318 (510)
Q Consensus 309 YKEL~e~l~~ 318 (510)
.+.|.+.++-
T Consensus 123 E~~iL~~L~~ 132 (260)
T 2cch_B 123 EHLVLKVLTF 132 (260)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHcCC
Confidence 9999999874
No 36
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=96.87 E-value=0.005 Score=52.33 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCC------ccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHH
Q 046187 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRN------RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGK 211 (510)
Q Consensus 138 ~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrG------Rs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr 211 (510)
.|.++|-+||+++ +++.|.+++.++... +..+ -+.-..+|||+|.+||..+....-..+.+..++.+.++.+
T Consensus 5 ~v~dLcVqfgc~e-~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~~ 82 (95)
T 3m03_A 5 GIRDLAVQFSCIE-AVNMASKILKSYESS-LPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDR 82 (95)
T ss_dssp CHHHHHHHHTCGG-GHHHHHHHHHHHHTT-SCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHHH
T ss_pred CHHHHHHHhCCHH-HHHHHHHHHHHHHHH-hHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHH
Confidence 4678999999998 888888888887743 2211 2244689999999999999999999999999999999988
Q ss_pred HHHHHHHHh
Q 046187 212 YIKILGEAL 220 (510)
Q Consensus 212 ~yk~L~k~L 220 (510)
....+.+..
T Consensus 83 l~~~~e~~~ 91 (95)
T 3m03_A 83 LCKQLEKIG 91 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 37
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=96.67 E-value=0.0068 Score=59.20 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=78.2
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCC-CCCHHHHHHHhC--CCHHHHHHH
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK-RKTQAEICKVTG--LTEVTLRKV 308 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~-~~t~keIa~vag--VSe~TIRkr 308 (510)
.++|..++.+++|..++..+|..++++......+.+++..-|++||+|+||++... +.+.++++.+++ .+...|.+.
T Consensus 55 vdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 134 (257)
T 1g3n_C 55 GTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQ 134 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHH
Confidence 46888999999999999999999999998877788899999999999999998875 788999998865 789999999
Q ss_pred HHHHHHhhcc
Q 046187 309 YKELLENWDD 318 (510)
Q Consensus 309 YKEL~e~l~~ 318 (510)
.+.|++.++-
T Consensus 135 E~~iL~~L~~ 144 (257)
T 1g3n_C 135 EKELLEKLAW 144 (257)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHCCC
Confidence 9999999884
No 38
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=96.63 E-value=0.0093 Score=59.31 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=76.9
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhc-cccCCCChHHHHHHHHHHHHHHcCC-CCCHHHHHHHhC--CCHHHHHH
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINK-CFCTRRNPISISAAAIYLACQLEDK-RKTQAEICKVTG--LTEVTLRK 307 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~-~l~~GRsP~sIAAAaIYlAarl~g~-~~t~keIa~vag--VSe~TIRk 307 (510)
.++|...+.+++|..++...|..++++.... ..+.++...-|++||+|+||++.+. ..+.+|++.+++ .+...|.+
T Consensus 54 v~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~ 133 (283)
T 1w98_B 54 LDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILT 133 (283)
T ss_dssp HHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHH
Confidence 4678889999999999999999999988875 4678899999999999999999876 678999998874 78999999
Q ss_pred HHHHHHHhhcc
Q 046187 308 VYKELLENWDD 318 (510)
Q Consensus 308 rYKEL~e~l~~ 318 (510)
..+.|++.++-
T Consensus 134 mE~~IL~~L~~ 144 (283)
T 1w98_B 134 MELMIMKALKW 144 (283)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHcCC
Confidence 99999999984
No 39
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=96.43 E-value=0.0072 Score=63.58 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHhC--CccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Q 046187 135 AYLQIIDVASILGLDY-DICDHAFQLFRDCCSA--TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202 (510)
Q Consensus 135 a~~~I~~ic~~L~LP~-~VidtA~~LyK~a~e~--~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt 202 (510)
|+.+|.++|++|+++. .+.+....+|+.+... .++++|..+.++-.|+|+.||..+..++|+||....
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Y 352 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 352 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 7789999999999875 7778888888887764 799999999999999999999999999999998854
No 40
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=96.31 E-value=0.01 Score=61.13 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHhC--CccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Q 046187 135 AYLQIIDVASILGLDY-DICDHAFQLFRDCCSA--TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202 (510)
Q Consensus 135 a~~~I~~ic~~L~LP~-~VidtA~~LyK~a~e~--~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt 202 (510)
|+.+|.++|+.|+++. .+.+.+..+|..+... .++++|..+.++..|+|+.||..+...+|+||....
T Consensus 218 a~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Y 288 (347)
T 2r7g_A 218 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 288 (347)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 7788999999999876 5788888888887763 789999999999999999999999999999998864
No 41
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=96.23 E-value=0.012 Score=57.31 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=76.2
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcC-CCCCHHHHHHHhC--CCHHHHHHH
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLED-KRKTQAEICKVTG--LTEVTLRKV 308 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g-~~~t~keIa~vag--VSe~TIRkr 308 (510)
.++|...+.+++|..++..+|..++++......+.+++..-|++||+|+||++.. .+.+.++++.+++ .+...|.+.
T Consensus 56 vdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 135 (254)
T 2f2c_A 56 LTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQ 135 (254)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 4678889999999999999999999999887778899999999999999999976 4778999877654 688899999
Q ss_pred HHHHHHhhcc
Q 046187 309 YKELLENWDD 318 (510)
Q Consensus 309 YKEL~e~l~~ 318 (510)
.+.|++.++-
T Consensus 136 E~~IL~~L~~ 145 (254)
T 2f2c_A 136 EKDILEALKW 145 (254)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHCCC
Confidence 9999999884
No 42
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=95.88 E-value=0.024 Score=62.82 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHhC--CccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Q 046187 135 AYLQIIDVASILGLDY-DICDHAFQLFRDCCSA--TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAA 202 (510)
Q Consensus 135 a~~~I~~ic~~L~LP~-~VidtA~~LyK~a~e~--~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt 202 (510)
|+.+|.++|..|+++. .+.+.+..+|+.+... .++++|..+.++..|+|..||..+..++|+||....
T Consensus 527 Aa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Y 597 (656)
T 4elj_A 527 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 597 (656)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 7899999999998774 6888999999888764 789999999999999999999999999999998753
No 43
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=95.30 E-value=0.06 Score=54.57 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=56.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhC----CccCCccHHHHHHHHHHHHHHh-cCCCCCHHHHHHHhCCCHHHHHHH
Q 046187 138 QIIDVASILGLDYDICDHAFQLFRDCCSA----TCLRNRSVEALATAALVQAIRE-AQEPRTLQEISIAANVPQKEIGKY 212 (510)
Q Consensus 138 ~I~~ic~~L~LP~~VidtA~~LyK~a~e~----~~lrGRs~eaVaAACLYIACR~-~~~PrTLkEIa~vt~VskkeIgr~ 212 (510)
+..++|..|+|++.+.+.|..+|+.+... ..+.|. .+..-.||||+||.. ++...+|-.|-..++++..++
T Consensus 5 rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~F--- 80 (304)
T 2qdj_A 5 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF--- 80 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHH---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHH---
Confidence 56679999999999999999999998874 223344 444455559999974 577899999999999997765
Q ss_pred HHHHHH
Q 046187 213 IKILGE 218 (510)
Q Consensus 213 yk~L~k 218 (510)
|++|.+
T Consensus 81 f~k~~~ 86 (304)
T 2qdj_A 81 FNLLKE 86 (304)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 444444
No 44
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=95.28 E-value=0.057 Score=54.34 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=76.5
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcC-CCCCHHHHHHHhC--CCHHHHHHH
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLED-KRKTQAEICKVTG--LTEVTLRKV 308 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g-~~~t~keIa~vag--VSe~TIRkr 308 (510)
.++|..++.+++|+.++..+|..++++......+....+.-|+++|+|+||++.. .+.+.+++..+++ .+...|.+.
T Consensus 75 vdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~m 154 (306)
T 3g33_B 75 AYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDW 154 (306)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHH
Confidence 4688999999999999999999999888877778899999999999999999875 4567889888876 788899999
Q ss_pred HHHHHHhhcc
Q 046187 309 YKELLENWDD 318 (510)
Q Consensus 309 YKEL~e~l~~ 318 (510)
-+.|++.|+-
T Consensus 155 E~~IL~~L~f 164 (306)
T 3g33_B 155 EVLVLGKLKW 164 (306)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHcCC
Confidence 9999998884
No 45
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=93.48 E-value=0.39 Score=40.71 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=58.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcc------ccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHH
Q 046187 235 MPRFCTLLQLNKSAQVLATHIGEVVINKC------FCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV 308 (510)
Q Consensus 235 I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~------l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkr 308 (510)
|..+|-.||+.. ++..|.+|++.....- -+.-.+| ..++||+|.+|+.+..+++...+....|+++.-..+.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P-~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~~l 83 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRP-LFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRL 83 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSH-HHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhcccccccc-HHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHHH
Confidence 445666666664 6666666666655320 0122344 5788999999999999999999999999999988888
Q ss_pred HHHHHHhhcc
Q 046187 309 YKELLENWDD 318 (510)
Q Consensus 309 YKEL~e~l~~ 318 (510)
.+.+......
T Consensus 84 ~~~~e~~~~~ 93 (95)
T 3m03_A 84 CKQLEKIGQQ 93 (95)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 7777665543
No 46
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=91.79 E-value=0.076 Score=42.48 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCcccccCCCCccccccccceec
Q 046187 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 1 m~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
+.||.|+. +..++...|. ++|.+||+++
T Consensus 9 L~CP~ck~--~L~~~~~~~~--LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKG--PLKLSADKTE--LISKGAGLAY 36 (69)
T ss_dssp CCCTTTCC--CCEECTTSSE--EEETTTTEEE
T ss_pred eeCCCCCC--cCeEeCCCCE--EEcCCCCcEe
Confidence 57999997 3335556676 9999999987
No 47
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=91.69 E-value=0.73 Score=51.16 Aligned_cols=71 Identities=10% Similarity=0.185 Sum_probs=56.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCc----cCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHH
Q 046187 138 QIIDVASILGLDYDICDHAFQLFRDCCS-ATC----LRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEI 209 (510)
Q Consensus 138 ~I~~ic~~L~LP~~VidtA~~LyK~a~e-~~~----lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeI 209 (510)
+..++|..|++.+.+.++|.+.|+.+.. .+. +.| ....+.|+.+|.||+.+|...+|-.|-..++++..++
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg-~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~lsl~~F 82 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF 82 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----C-CHHHHHHHHHHHHHHTTCCCSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCccc-chHHhhhhhheeeeeccCCeeeHHHHHHHhcCCHHHH
Confidence 4567999999999999999999999985 222 333 4556777778888888999999999999988886554
No 48
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=91.54 E-value=0.078 Score=42.31 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCcccccCCCCccccccccceec
Q 046187 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 1 m~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
+.||.|+. +..++...|. ++|.+||+++
T Consensus 9 L~CP~ck~--~L~~~~~~~~--LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKG--PLVFDKSKDE--LICKGDRLAF 36 (68)
T ss_dssp CBCTTTCC--BCEEETTTTE--EEETTTTEEE
T ss_pred eECCCCCC--cCeEeCCCCE--EEcCCCCcEe
Confidence 57999997 3335556776 9999999987
No 49
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=91.50 E-value=0.073 Score=42.70 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCcccccCCCCccccccccceec
Q 046187 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 1 m~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
+.||.|+. +..++..+|. ++|.+||+++
T Consensus 9 L~CP~ck~--~L~~~~~~~~--LiC~~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKG--RLEFQRAQAE--LVCNADRLAF 36 (70)
T ss_dssp CBCTTTCC--BEEEETTTTE--EEETTTTEEE
T ss_pred eECCCCCC--cCEEeCCCCE--EEcCCCCcee
Confidence 57999998 3335656777 9999999987
No 50
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=91.26 E-value=0.083 Score=42.14 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCcccccCCCCccccccccceec
Q 046187 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 1 m~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
+.||.|+. +..++...|. ++|.+||+++
T Consensus 9 L~CP~ck~--~L~~~~~~~~--LiC~~cg~~Y 36 (68)
T 2jr6_A 9 LVCPVTKG--RLEYHQDKQE--LWSRQAKLAY 36 (68)
T ss_dssp CBCSSSCC--BCEEETTTTE--EEETTTTEEE
T ss_pred eECCCCCC--cCeEeCCCCE--EEcCCCCcEe
Confidence 57999997 3335656676 9999999987
No 51
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=91.10 E-value=15 Score=38.83 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWD 317 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~ 317 (510)
...|++|||+.+|||..|||.+.+.-...|.
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999988766655554
No 52
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=91.04 E-value=0.093 Score=41.76 Aligned_cols=28 Identities=11% Similarity=-0.043 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCcccccCCCCccccccccceec
Q 046187 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 1 m~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
+.||.|+. +..++..+|. ++|.+||+++
T Consensus 11 L~CP~ck~--~L~~~~~~g~--LvC~~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKG--PLRYLESEQL--LVNERLNLAY 38 (67)
T ss_dssp CBCTTTCC--BCEEETTTTE--EEETTTTEEE
T ss_pred hCCCCCCC--cCeEeCCCCE--EEcCCCCccc
Confidence 47999998 3335666777 9999999987
No 53
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=90.96 E-value=0.057 Score=42.82 Aligned_cols=30 Identities=37% Similarity=0.712 Sum_probs=24.7
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceeccc
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIAE 34 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vlee 34 (510)
+||+|+..+ ++.+++.-. ..|..||.||-+
T Consensus 9 KCp~C~niq-~VFShA~tv--V~C~~Cg~~L~~ 38 (66)
T 1qxf_A 9 KCPDCEHEQ-VIFDHPSTI--VKCIICGRTVAE 38 (66)
T ss_dssp ECTTTCCEE-EEESSCSSC--EECSSSCCEEEE
T ss_pred ECCCCCCce-EEEecCceE--EEcccCCCEEee
Confidence 699998854 557888887 999999999954
No 54
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=90.53 E-value=1.7 Score=44.79 Aligned_cols=125 Identities=15% Similarity=0.131 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhc----------CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhc-c-----------c---------
Q 046187 175 EALATAALVQAIREA----------QEPRTLQEISIAANVPQKEIGKYIKILGEALQ-L-----------S--------- 223 (510)
Q Consensus 175 eaVaAACLYIACR~~----------~~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~-i-----------~--------- 223 (510)
.++.|.|+-++-.-. ...++|--|.++++++..++.|.+..+.+.-+ + +
T Consensus 105 ~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~KVIE~fVr~e~~LprelvkHL~~iEe~iLeslaW 184 (347)
T 2r7g_A 105 MSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAW 184 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHh
Confidence 457788877765543 34688889999999999999888877655411 0 0
Q ss_pred ---CCC------------CCcc-----------hhhhHHHHHhhcCCCH-HHHHHHHHHHHHHHh--ccccCCCChHHHH
Q 046187 224 ---QPI------------NSNS-----------IAVHMPRFCTLLQLNK-SAQVLATHIGEVVIN--KCFCTRRNPISIS 274 (510)
Q Consensus 224 ---~pv------------~~~~-----------p~~~I~Rfcs~L~L~~-~V~~~A~~Ia~~a~~--~~l~~GRsP~sIA 274 (510)
.+. .... +..-|..+|++|++.. ++.+.+|.+.+.+.. ..++.+|+-.-|.
T Consensus 185 ~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQii 264 (347)
T 2r7g_A 185 LSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIM 264 (347)
T ss_dssp STTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHH
T ss_pred ccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHH
Confidence 000 0000 1122777888898764 567777777766554 5789999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHhC
Q 046187 275 AAAIYLACQLEDKRKTQAEICKVTG 299 (510)
Q Consensus 275 AAaIYlAarl~g~~~t~keIa~vag 299 (510)
..|||..|++.+..++.++|-+.-.
T Consensus 265 lCaiY~i~Kv~~~~~tF~~Ii~~Yr 289 (347)
T 2r7g_A 265 MCSMYGICKVKNIDLKFKIIVTAYK 289 (347)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999999999999999877543
No 55
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=90.08 E-value=0.24 Score=40.57 Aligned_cols=47 Identities=19% Similarity=0.389 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhcccCC
Q 046187 179 TAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQP 225 (510)
Q Consensus 179 AACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i~~p 225 (510)
---|+-+-+..+-|....||+..++|++|+|.++++.|+++-.+..|
T Consensus 21 eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 33477788999999999999999999999999999999998776543
No 56
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=89.58 E-value=0.097 Score=41.17 Aligned_cols=30 Identities=27% Similarity=0.583 Sum_probs=24.8
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceeccc
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIAE 34 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vlee 34 (510)
+||+|+..+ ++..|+.-. ..|..||.||-+
T Consensus 17 kCp~C~~~q-~VFSha~t~--V~C~~Cgt~L~~ 46 (63)
T 3j20_W 17 KCIDCGNEQ-IVFSHPATK--VRCLICGATLVE 46 (63)
T ss_dssp ECSSSCCEE-EEESSCSSC--EECSSSCCEEEE
T ss_pred ECCCCCCee-EEEecCCeE--EEccCcCCEEec
Confidence 699998854 557888887 999999999954
No 57
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=89.42 E-value=1.9 Score=42.06 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=71.6
Q ss_pred hhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCC-CCCHHHHHHHhC--CCHHHHHHH
Q 046187 232 AVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDK-RKTQAEICKVTG--LTEVTLRKV 308 (510)
Q Consensus 232 ~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~-~~t~keIa~vag--VSe~TIRkr 308 (510)
.++|...+.+++|..++..+|..++++.....-+......-|+++|+|+|+++... +.+.++++..++ .+...|.+.
T Consensus 53 vdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~m 132 (252)
T 1f5q_B 53 TTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTL 132 (252)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 46888899999999999999999998887666677788999999999999998864 567888877764 677888887
Q ss_pred HHHHHHhhc
Q 046187 309 YKELLENWD 317 (510)
Q Consensus 309 YKEL~e~l~ 317 (510)
=+.++..++
T Consensus 133 E~~IL~~L~ 141 (252)
T 1f5q_B 133 EVKSLDTLS 141 (252)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 788888776
No 58
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=88.79 E-value=0.1 Score=42.92 Aligned_cols=30 Identities=20% Similarity=0.569 Sum_probs=24.9
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceeccc
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIAE 34 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vlee 34 (510)
+||+|+..+ +|.+|+.-. ..|..||.||-+
T Consensus 34 kCp~C~n~q-~VFShA~t~--V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 34 KCAQCQNIQ-MIFSNAQST--IICEKCSAILCK 63 (81)
T ss_dssp ECSSSCCEE-EEETTCSSC--EECSSSCCEEEE
T ss_pred ECCCCCCee-EEEecCccE--EEccCCCCEEee
Confidence 699998854 557888887 999999999954
No 59
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=88.50 E-value=0.15 Score=42.07 Aligned_cols=30 Identities=23% Similarity=0.617 Sum_probs=24.9
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceeccc
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIAE 34 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vlee 34 (510)
+||+|+..+ +|..|+.-. ..|..||.||-+
T Consensus 36 kCp~C~~~q-~VFSha~t~--V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 36 KCPGCLNIT-TVFSHAQTA--VTCESCSTILCT 65 (82)
T ss_dssp ECTTSCSCE-EEESBCSSC--CCCSSSCCCCEE
T ss_pred ECCCCCCee-EEEecCCeE--EEccccCCEEec
Confidence 699998854 557888887 999999999954
No 60
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.76 E-value=0.2 Score=37.49 Aligned_cols=27 Identities=33% Similarity=0.660 Sum_probs=18.8
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
.||.||+. ....++ ..+ .+|..||.+.
T Consensus 21 ~CP~CG~~-~fm~~~-~~R--~~C~kCG~t~ 47 (50)
T 3j20_Y 21 FCPRCGPG-VFMADH-GDR--WACGKCGYTE 47 (50)
T ss_dssp ECSSSCSS-CEEEEC-SSE--EECSSSCCEE
T ss_pred cCCCCCCc-eEEecC-CCe--EECCCCCCEE
Confidence 49999882 222333 455 9999999874
No 61
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=87.14 E-value=0.18 Score=41.92 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=24.8
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceeccc
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIAE 34 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vlee 34 (510)
+||+|+..+ ++..|+.-. ..|..||.||-+
T Consensus 38 kCp~C~~~~-~VFShA~t~--V~C~~CgtvL~~ 67 (86)
T 3iz6_X 38 KCQGCFNIT-TVFSHSQTV--VVCPGCQTVLCQ 67 (86)
T ss_dssp ECTTTCCEE-EEETTCSSC--CCCSSSCCCCSC
T ss_pred ECCCCCCee-EEEecCCcE--EEccCCCCEeec
Confidence 699998854 557888887 999999999955
No 62
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=86.27 E-value=0.17 Score=41.94 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=23.0
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
.||.||. ..+.+.++|- ..|..||.++
T Consensus 29 ~Cp~CG~--~~v~r~atGi--W~C~~Cg~~~ 55 (83)
T 1vq8_Z 29 ACPNCGE--DRVDRQGTGI--WQCSYCDYKF 55 (83)
T ss_dssp ECSSSCC--EEEEEEETTE--EEETTTCCEE
T ss_pred cCCCCCC--cceeccCCCe--EECCCCCCEe
Confidence 5999997 3557889997 9999999975
No 63
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=84.55 E-value=11 Score=37.98 Aligned_cols=90 Identities=14% Similarity=0.031 Sum_probs=74.0
Q ss_pred cchhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhc---cccCCCChHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHH
Q 046187 229 NSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINK---CFCTRRNPISISAAAIYLACQLED-KRKTQAEICKVTGLTEVT 304 (510)
Q Consensus 229 ~~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~---~l~~GRsP~sIAAAaIYlAarl~g-~~~t~keIa~vagVSe~T 304 (510)
.+..+||.|+...-.++..+.-.|...++++... ..+...+..=+-.+||.+|++.++ ...+.+.+|++.||+...
T Consensus 75 ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~E 154 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHE 154 (293)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHH
Confidence 3578999999999999998888887777777652 223567889999999999999885 457789999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 046187 305 LRKVYKELLENWDD 318 (510)
Q Consensus 305 IRkrYKEL~e~l~~ 318 (510)
|..-=++|+..++-
T Consensus 155 LN~LE~eFL~lLdf 168 (293)
T 2pmi_B 155 LNILENDFLKRVNY 168 (293)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHcCC
Confidence 99888888887764
No 64
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=84.34 E-value=0.97 Score=33.42 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
...+.+|||+.+|+|+.||+...+.+++.+..
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 46789999999999999999999999887764
No 65
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=83.50 E-value=1.8 Score=34.64 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
...+.+|||+.+|+|+.||+++.+.+++.+..
T Consensus 35 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999888765
No 66
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=82.87 E-value=2.1 Score=36.53 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc-ccCCCCC
Q 046187 269 NPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD-DLLPSNY 324 (510)
Q Consensus 269 sP~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL~e~l~-~Lip~~~ 324 (510)
....+-+|-+| +-..++|.|||+.+|||..||.+..+.-.+.++ ..+|+.|
T Consensus 20 ~~~~~~~A~ly-----Yv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~~~~~P~g~ 71 (101)
T 2w7n_A 20 GQQTIEIARGV-----LVDGKPQATFATSLGLTRGAVSQAVHRVWAAFEDKNLPEGY 71 (101)
T ss_dssp CHHHHHHHHHH-----HTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCCCTTE
T ss_pred HHHHHHHHHHH-----HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHhccCCCCCe
Confidence 44455555555 447899999999999999999988888777654 3567776
No 67
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=82.71 E-value=1.1 Score=36.34 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
|.+.+.+|||+.+|||..||+.-++.|.+.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDV 51 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 688999999999999999999888887764
No 68
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=82.56 E-value=4.7 Score=38.77 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=45.5
Q ss_pred hhHHHHHhhcCCCHHHHHHHHHHHHHHHhccc---cCCCChHHHHHHHHHHHHHHcCCCCCHHH
Q 046187 233 VHMPRFCTLLQLNKSAQVLATHIGEVVINKCF---CTRRNPISISAAAIYLACQLEDKRKTQAE 293 (510)
Q Consensus 233 ~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l---~~GRsP~sIAAAaIYlAarl~g~~~t~ke 293 (510)
.-|.++-.+-.+++.|...|..|++...-..- ..-.+|.-+||||+.||++..+.+++..|
T Consensus 17 nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE 80 (260)
T 3h4c_A 17 NCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAE 80 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHH
Confidence 45677777788999888888888765542111 12257999999999999999999888643
No 69
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=82.12 E-value=4.6 Score=40.77 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=49.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhc-cc---cCCCChHHHHHHHHHHHHHHc-CCCCCHHHHHHHhCCCHHH
Q 046187 235 MPRFCTLLQLNKSAQVLATHIGEVVINK-CF---CTRRNPISISAAAIYLACQLE-DKRKTQAEICKVTGLTEVT 304 (510)
Q Consensus 235 I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~-~l---~~GRsP~sIAAAaIYlAarl~-g~~~t~keIa~vagVSe~T 304 (510)
...+|..|+++..+...||++.+.+... ++ ..|..-.-+. ||||+||.-. |..+++.+|-+.++++...
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~-acLY~a~~~~~~n~vsLt~LLr~~~lsi~~ 79 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWG-ICIFIAAVDLDEMSFTFTELQKNIEISVHK 79 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHH-HHHHHHHHHHTCCCSCHHHHHHHHTCCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHH-HhHHHHhhccCCCcCcHHHHHHHcCCCHHH
Confidence 4567999999999999999999998873 22 3333444444 4499999644 5678999998888887644
No 70
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=81.83 E-value=1.6 Score=35.81 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
...+.+|||+.+++|+.||+...+.++..++.
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 46799999999999999999999999988864
No 71
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=81.67 E-value=2.4 Score=32.21 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
...+.+|||+.+|+|..||+...+.+...+..
T Consensus 25 ~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 45699999999999999999999998887764
No 72
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=81.66 E-value=24 Score=35.35 Aligned_cols=97 Identities=8% Similarity=-0.059 Sum_probs=74.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhC--Cc-cCCccHHHHHHHHHHHHHHh-cCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 139 IIDVASILGLDYDICDHAFQLFRDCCSA--TC-LRNRSVEALATAALVQAIRE-AQEPRTLQEISIAANVPQKEIGKYIK 214 (510)
Q Consensus 139 I~~ic~~L~LP~~VidtA~~LyK~a~e~--~~-lrGRs~eaVaAACLYIACR~-~~~PrTLkEIa~vt~VskkeIgr~yk 214 (510)
|.++...-+++..+.=.|..|+.++... ++ +.......+..+||.+|.|- .+...+-+..+.+.|++.+||.+.-+
T Consensus 81 l~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~LE~ 160 (293)
T 2pmi_B 81 FIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILEN 160 (293)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHHHH
Confidence 4456666678888888888777777763 22 23456778889999999994 56778889999999999999999999
Q ss_pred HHHHHhcccCCCCCcchhhhHHHH
Q 046187 215 ILGEALQLSQPINSNSIAVHMPRF 238 (510)
Q Consensus 215 ~L~k~L~i~~pv~~~~p~~~I~Rf 238 (510)
.+...|+.+..+. .++|...+
T Consensus 161 eFL~lLdf~L~V~---~ee~~~cy 181 (293)
T 2pmi_B 161 DFLKRVNYRIIPR---DHNITLCS 181 (293)
T ss_dssp HHHHTTTTCCSCC---TTHHHHHH
T ss_pred HHHHHcCCceeeC---HHHHHHHH
Confidence 9999998887654 35664333
No 73
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=81.66 E-value=2.4 Score=31.87 Aligned_cols=36 Identities=14% Similarity=-0.020 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccCCC
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPS 322 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~Lip~ 322 (510)
...+.++||+.+|+|..||+++++.....+...+..
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~ 65 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 65 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC----
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhc
Confidence 468999999999999999999999988888776543
No 74
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=81.12 E-value=0.66 Score=35.38 Aligned_cols=26 Identities=31% Similarity=0.781 Sum_probs=18.3
Q ss_pred CCCCCCCCCCcccccCCCCcccccccccee
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRV 31 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~V 31 (510)
.||.||.- .+.....+. ..|+.||+.
T Consensus 20 fCPkCG~~--~~ma~~~dr--~~C~kCgyt 45 (55)
T 2k4x_A 20 FCPRCGPG--VFLAEHADR--YSCGRCGYT 45 (55)
T ss_dssp CCTTTTTT--CCCEECSSE--EECTTTCCC
T ss_pred cCcCCCCc--eeEeccCCE--EECCCCCCE
Confidence 59999982 222223345 999999996
No 75
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=81.07 E-value=2.3 Score=32.38 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccCCC
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPS 322 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~Lip~ 322 (510)
...+.+|||+.+|+|+.||+.........+...+..
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~ 59 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 59 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGG
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999998888876543
No 76
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=81.04 E-value=2.5 Score=32.65 Aligned_cols=32 Identities=6% Similarity=0.018 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
...+.+|||+.+|+|+.||+..++.+++.+..
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 56899999999999999999999999888764
No 77
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=80.45 E-value=1.7 Score=29.84 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
...+.++||+.+|||..||++.++.+
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 45789999999999999999877643
No 78
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=79.73 E-value=4.5 Score=37.20 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhC--CCHHHHHHHHHHHHHHhc
Q 046187 176 ALATAALVQAIREAQEPRTLQEISIAAN--VPQKEIGKYIKILGEALQ 221 (510)
Q Consensus 176 aVaAACLYIACR~~~~PrTLkEIa~vt~--VskkeIgr~yk~L~k~L~ 221 (510)
.++=|.||.+ +.|.++++|+.+++ ++..++...+..|...+.
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~ 53 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYE 53 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhh
Confidence 4566778876 77999999999999 999999999999988764
No 79
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=78.98 E-value=2.3 Score=34.90 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccCCC
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPS 322 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~Lip~ 322 (510)
...+.+|||+.+|+|+.||++.++.++..+..--..
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 76 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRT 76 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 367899999999999999999999999988864333
No 80
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=78.86 E-value=2.7 Score=44.22 Aligned_cols=65 Identities=11% Similarity=0.134 Sum_probs=53.5
Q ss_pred HHHHHhhcCCCH-HHHHHHHHHHHHHHh--ccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Q 046187 235 MPRFCTLLQLNK-SAQVLATHIGEVVIN--KCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 299 (510)
Q Consensus 235 I~Rfcs~L~L~~-~V~~~A~~Ia~~a~~--~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vag 299 (510)
|..+|.+|+++. ++....|.+.+.+.. ..++.+|+-.-|...|||..|++.+..++.++|-+.-.
T Consensus 286 l~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr 353 (411)
T 4ell_A 286 LNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 677899998764 677777777766553 57899999999999999999999999999999877544
No 81
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=78.00 E-value=3.9 Score=31.50 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc-ccCC
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWD-DLLP 321 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~-~Lip 321 (510)
...+.+|||+.+|+|+.||+.........+. ..+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~ 64 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLKYHESR 64 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 5799999999999999999998888877776 5443
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=76.95 E-value=2.4 Score=34.30 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~L 319 (510)
...+.+|||+.+|+|+.||+.++......+...
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999888777766554
No 83
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=75.73 E-value=4.9 Score=32.20 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccC
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~Li 320 (510)
...|.+|||+.+|+|..||+.........+...+
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999988888777654
No 84
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=75.65 E-value=2.3 Score=34.40 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
...+.+|||+.+|+|+.||+...+.+++.+..
T Consensus 43 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 36789999999999999999999999888764
No 85
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=75.41 E-value=2.6 Score=35.96 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+..+|++|||+.+|+|..||... +...+.
T Consensus 56 ~ge~TQREIA~~lGiS~stISRi-~r~L~~ 84 (101)
T 1jhg_A 56 RGEMSQRELKNELGAGIATITRG-SNSLKA 84 (101)
T ss_dssp HCCSCHHHHHHHHCCCHHHHHHH-HHHHHH
T ss_pred cCCcCHHHHHHHHCCChhhhhHH-HHHHHH
Confidence 34599999999999999999866 433333
No 86
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=74.16 E-value=0.7 Score=39.89 Aligned_cols=29 Identities=31% Similarity=0.619 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCcc---------------cccCCCCccccccccceec
Q 046187 1 MKCPYCSAAQGRC---------------ATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 1 m~Cp~C~~~~~~i---------------~D~~~Gd~~~VC~~CG~Vl 32 (510)
|+||.|+...... ++.-.+ .+|..||-++
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~---~~C~~CGE~~ 46 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHG---LYCVHCEESI 46 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEE---EEESSSSCEE
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCce---eECCCCCCEe
Confidence 8999999752210 111134 6899999886
No 87
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=72.78 E-value=3.1 Score=34.78 Aligned_cols=31 Identities=16% Similarity=-0.008 Sum_probs=28.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
..+.+|||+.+++|+.||+...+.+++.+..
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 5689999999999999999999999888764
No 88
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=72.12 E-value=4.4 Score=32.90 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
|...+..+||+.+||+..||+++++.|.+.
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999763
No 89
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=71.84 E-value=3.2 Score=36.13 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=27.0
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DKRK-TQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~~~-t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
|.++ +.+++|+.+|||..|||++|+.|...=
T Consensus 35 G~~LPser~La~~~gVSr~tVReAl~~L~~eG 66 (134)
T 4ham_A 35 GEKILSIREFASRIGVNPNTVSKAYQELERQE 66 (134)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCCccHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 5677 688999999999999999999997643
No 90
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=71.70 E-value=43 Score=34.85 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWD 317 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~ 317 (510)
...|++|||+.+|||..|||.+...-...|.
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999977655544443
No 91
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=70.92 E-value=3.4 Score=29.88 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYK 310 (510)
...++++||+.+|||..||++.++
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 457999999999999999997654
No 92
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=70.61 E-value=37 Score=32.66 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhc
Q 046187 175 EALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQ 221 (510)
Q Consensus 175 eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~ 221 (510)
..++=|.||.+ +.|.++++|+.+++++..++..++..|...+.
T Consensus 17 ~~~iEAlLf~a----~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~ 59 (219)
T 2z99_A 17 KRVLEALLLVI----DTPVTADALAAATEQPVYRVAAKLQLMADELT 59 (219)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHh
Confidence 45677888876 77999999999999999999999999988773
No 93
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=69.01 E-value=1.7 Score=36.91 Aligned_cols=13 Identities=8% Similarity=-0.102 Sum_probs=10.9
Q ss_pred CCCccccccccceec
Q 046187 18 TGRSITECGSCGRVI 32 (510)
Q Consensus 18 ~Gd~~~VC~~CG~Vl 32 (510)
+|. +||..||+.+
T Consensus 51 ~~~--LvC~~c~~~Y 63 (97)
T 2k5r_A 51 HEA--LITRDRKQVF 63 (97)
T ss_dssp SEE--EECTTSCEEE
T ss_pred CCe--EEcCCCCCCc
Confidence 455 9999999986
No 94
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=68.99 E-value=1.8 Score=34.62 Aligned_cols=26 Identities=27% Similarity=0.689 Sum_probs=16.6
Q ss_pred CCCCCCCCCCcccccCCCCccccccccce-ec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGR-VI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~-Vl 32 (510)
+|++||....+ ..+| ...|..||. ||
T Consensus 30 ~C~~CG~~~e~----~~~d-~irCp~CG~RIL 56 (70)
T 1twf_L 30 ICAECSSKLSL----SRTD-AVRCKDCGHRIL 56 (70)
T ss_dssp ECSSSCCEECC----CTTS-TTCCSSSCCCCC
T ss_pred ECCCCCCccee----CCCC-CccCCCCCceEe
Confidence 59999873211 1344 267999998 55
No 95
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=68.80 E-value=5 Score=34.55 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=26.8
Q ss_pred CCCCC-HHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DKRKT-QAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~~~t-~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
|.+++ .+++|+.+|||..|||++|+.|...=
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G 65 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAG 65 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45664 99999999999999999999998743
No 96
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=68.44 E-value=6.5 Score=34.58 Aligned_cols=37 Identities=5% Similarity=0.053 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccCCCC
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSN 323 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~Lip~~ 323 (510)
...+.+|||+.+|+|+.||++++..-...+...+...
T Consensus 108 ~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~ 144 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRAL 144 (157)
T ss_dssp SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999988888887766544
No 97
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=68.42 E-value=20 Score=33.10 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
.++|+++||..+|+|..|+.+..++|.+.-
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g 205 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKREN 205 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 578999999999999999999999998753
No 98
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=68.17 E-value=2 Score=32.76 Aligned_cols=26 Identities=27% Similarity=0.654 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCcccccCCCCcccccc--ccceec
Q 046187 1 MKCPYCSAAQGRCATTSTGRSITECG--SCGRVI 32 (510)
Q Consensus 1 m~Cp~C~~~~~~i~D~~~Gd~~~VC~--~CG~Vl 32 (510)
+.||.|++. ..++ .|. ++|. .||+.+
T Consensus 11 L~CP~c~~~--L~~~--~~~--L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAP--LEER--DAE--LICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSC--EEEE--TTE--EEECSSSCCCEE
T ss_pred eeCCCCCCc--ceec--CCE--EEcCCcCCCcEE
Confidence 479999982 2233 376 9999 999986
No 99
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=68.03 E-value=4.7 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
...+.+|||+.+||+..||+++.+.|.+.
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999998763
No 100
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=67.83 E-value=1.2 Score=35.66 Aligned_cols=29 Identities=31% Similarity=0.594 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCc--c----c---------ccCCCCccccccccceec
Q 046187 1 MKCPYCSAAQGR--C----A---------TTSTGRSITECGSCGRVI 32 (510)
Q Consensus 1 m~Cp~C~~~~~~--i----~---------D~~~Gd~~~VC~~CG~Vl 32 (510)
|+||-|+..... . + +.-.| .+|..||-++
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~---~~C~~CGE~~ 46 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHG---LYCVHCEESI 46 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEE---EEETTTCCEE
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCcee---EECCCCCCEE
Confidence 899999874221 0 1 11134 5899999876
No 101
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=67.55 E-value=7.6 Score=35.23 Aligned_cols=46 Identities=24% Similarity=0.187 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 174 VEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 174 ~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.+.-+-+.+|+|.+..+.|.+.+|||+..+++...|.+.+..|++.
T Consensus 26 ~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 26 GRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445667788887666779999999999999999999999998774
No 102
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=67.02 E-value=4.8 Score=34.02 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=26.8
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DKRK-TQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~~~-t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
|..+ +.+++|+.+|||..|||++|+.|...=
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr~al~~L~~~G 61 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVSKAYQSLLDDN 61 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4456 789999999999999999999998743
No 103
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=66.57 E-value=4.7 Score=31.23 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 046187 289 KTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 289 ~t~keIa~vagVSe~TIRkrYK 310 (510)
+|++|||+.+|||..||.+.+.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4789999999999999997764
No 104
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=66.33 E-value=6.6 Score=31.65 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
.-.++.+|+|+.++||+.|||.-+.+|.+.=
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3478999999999999999998888776643
No 105
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=66.06 E-value=7.1 Score=36.70 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
..++.+|||+.+++|+.||+...+.+++.++.
T Consensus 187 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 187 VGKTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999999988764
No 106
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=65.97 E-value=7.6 Score=38.50 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=27.5
Q ss_pred HcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 284 LEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 284 l~g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.....++++|||+.+|||+.|||+-++++.+.
T Consensus 17 ~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~ 48 (315)
T 2w48_A 17 YYEQDMTQAQIARELGIYRTTISRLLKRGREQ 48 (315)
T ss_dssp HHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34567999999999999999999888888664
No 107
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=65.53 E-value=10 Score=29.76 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+.+..|||+.+|+|..||++..+.|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999765
No 108
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=65.33 E-value=19 Score=33.39 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
.++|+++||+.+|+|..|+.+..++|.+.-
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~G 221 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKK 221 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCC
Confidence 578999999999999999999999998753
No 109
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=65.00 E-value=12 Score=31.85 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 273 ISAAAIYLACQLE-DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 273 IAAAaIYlAarl~-g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.|..++.+.++.. +...+.++||+.++|+..++++.++.|.+.
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3444444444433 567899999999999999999999999874
No 110
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=64.84 E-value=4.7 Score=33.82 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=26.3
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRK-TQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~-t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
|..+ +..++|+.++||..|||++++.|.+.
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr~al~~L~~~ 70 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIVNALRKLESA 70 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3345 89999999999999999999998875
No 111
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=64.47 E-value=2.3 Score=29.61 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKE 311 (510)
..+..+||+.+|||..||.+.++.
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 489999999999999999876553
No 112
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=64.19 E-value=3.3 Score=40.25 Aligned_cols=108 Identities=12% Similarity=0.062 Sum_probs=27.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHHH-HH---HHHHHHHHH---H--h-
Q 046187 192 PRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSA-QV---LATHIGEVV---I--N- 261 (510)
Q Consensus 192 PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~V-~~---~A~~Ia~~a---~--~- 261 (510)
..|.+|++..+||+...|.+..+- ...| ..+.+.++|..|+++.+. .. .+....... . +
T Consensus 43 g~t~~~la~~~g~s~~~is~~e~g------~~~p-----~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (311)
T 4ich_A 43 PGAQREFAAAIGLDESKLSKSLNG------TRRF-----SPHELVRIAEHSGVTVNWLINGRDDARTVAAVPAPTARSRS 111 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC------CCCC-----CHHHHHHHHHHHCCChhhhhcCCCccccccCCCCcccccCC
Confidence 357778888888887776654221 1111 124566777777775321 10 000000000 0 0
Q ss_pred --ccccCCCChHHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 262 --KCFCTRRNPISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 262 --~~l~~GRsP~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
...-....-.-|..|++-+..+ .|+ ..|+++||+.+|||..||=..|+.
T Consensus 112 ~~~~~~~~~~r~~il~aa~~l~~~-~G~~~~T~~~IA~~AGvs~gtlY~yF~s 163 (311)
T 4ich_A 112 APAGEPQSEARRRILETAWRLIAR-RGYHNVRIHDIASELGTSNATIHYHFPS 163 (311)
T ss_dssp -----CCHHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred CCCccchhhHHHHHHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 0000000112244444433333 365 589999999999999999766643
No 113
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=64.17 E-value=8.7 Score=34.30 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
+-+.+.++||+.+|+|+.|++++++.|.+.-
T Consensus 15 ~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 15 DSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4578999999999999999999999998754
No 114
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=63.79 E-value=7.3 Score=33.28 Aligned_cols=33 Identities=6% Similarity=0.134 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~L 319 (510)
...+.+|||+.+|+|..||++++......+...
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999888777666543
No 115
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=63.73 E-value=5.9 Score=34.27 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=26.4
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRK-TQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~-t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
|..+ +.+++|+.+|||..|||++|+.|...
T Consensus 32 G~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 62 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVAKAYKELEAQ 62 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456 79999999999999999999999764
No 116
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.59 E-value=1.9 Score=32.48 Aligned_cols=23 Identities=30% Similarity=0.729 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCcccccCCCCcccccccccee
Q 046187 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRV 31 (510)
Q Consensus 1 m~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~V 31 (510)
++||.|+.. -..|- ..|..||.+
T Consensus 15 ~iCpkC~a~------~~~ga--w~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGAT------NPWGA--KKCRKCGYK 37 (51)
T ss_dssp EECTTTCCE------ECTTC--SSCSSSSSC
T ss_pred ccCCCCCCc------CCCCc--eecCCCCCc
Confidence 479999883 24666 999999987
No 117
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=63.58 E-value=8.6 Score=29.57 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=28.7
Q ss_pred HhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 187 REAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 187 R~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
+..+.|.++.|||..+++++..+.+.++.|++.
T Consensus 20 ~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 20 SDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346678999999999999999999999888764
No 118
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=63.47 E-value=4.1 Score=36.34 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=20.1
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
.||+|+.--..-.|..++....+|..||++.
T Consensus 26 FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 26 FCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp BCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred eCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 5999988322213333344459999999965
No 119
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=63.39 E-value=9.7 Score=31.37 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=28.5
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 285 ~g~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
.|.+++..+||+.+|||..||+++++.|.+.=
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~G 61 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQG 61 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 46678999999999999999999999998753
No 120
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=63.21 E-value=3.6 Score=35.48 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=20.0
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceecc
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIA 33 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vle 33 (510)
.||+|+.--..-.+...|....+|..||++..
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 59999883222123222333499999999763
No 121
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=62.89 E-value=19 Score=32.23 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999875
No 122
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=62.84 E-value=7 Score=36.78 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
..++.+|||+.+++|+.||+...+.+++.++.
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999999988864
No 123
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=62.40 E-value=7.2 Score=36.98 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
..++.+|||+.+++|+.||+...+.+++.++.
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999999988764
No 124
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=62.23 E-value=12 Score=31.82 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 178 ATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 178 aAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
..+.+|++-+..+.|.+..||++.++++...+.+.+..|.+.
T Consensus 12 l~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 12 LTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344455654444678999999999999999999999988773
No 125
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=61.79 E-value=11 Score=29.00 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=28.6
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q 046187 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317 (510)
Q Consensus 285 ~g~~~t~keIa~vagVSe~TIRkrYKEL~e~l~ 317 (510)
.+.+++..|||+.+|++..||.+..+.|.+.=.
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~ 54 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDR 54 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 356789999999999999999999999987543
No 126
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=61.47 E-value=3.2 Score=34.41 Aligned_cols=33 Identities=15% Similarity=0.520 Sum_probs=25.1
Q ss_pred CCCCCCCCCCcc--cccCCCCccccccccceeccc
Q 046187 2 KCPYCSAAQGRC--ATTSTGRSITECGSCGRVIAE 34 (510)
Q Consensus 2 ~Cp~C~~~~~~i--~D~~~Gd~~~VC~~CG~Vlee 34 (510)
.||.|+....+. .|..+|.+.+.|..||.-.+-
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 599999864444 567777777999999987643
No 127
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=61.17 E-value=12 Score=32.60 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.+.+.++||+.+|+|+.|++++++.|.+.
T Consensus 21 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 21 NSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp CTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999765
No 128
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=60.70 E-value=16 Score=26.85 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHHHH
Q 046187 286 DKRKTQAEICKVT-----GLTEVTLRKVYKEL 312 (510)
Q Consensus 286 g~~~t~keIa~va-----gVSe~TIRkrYKEL 312 (510)
+...+..||++.+ +||..||++..+++
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 4578999999999 99999999888854
No 129
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=60.69 E-value=12 Score=32.57 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.+.+.++||+.+|+|+.|++++.+.|.+.
T Consensus 20 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 457899999999999999999999999775
No 130
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=60.49 E-value=11 Score=30.08 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.+.++.|||+.+|++..||.+..+.|.+.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 557899999999999999999999998653
No 131
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=60.44 E-value=22 Score=32.06 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
.++|+++||+.+|+|..|+.+..++|.+.-
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 195 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMG 195 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 578999999999999999999999997643
No 132
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=60.41 E-value=26 Score=31.78 Aligned_cols=30 Identities=7% Similarity=0.170 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
..++|+++||+.+|+|..|+.+..++|.+.
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999764
No 133
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=60.20 E-value=8.4 Score=33.51 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=26.3
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRK-TQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~-t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
|.++ +.+++|+.+|||..|||++|+.|...
T Consensus 25 G~~LPse~~La~~~gvSr~tVr~Al~~L~~~ 55 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARNGLTLLVEA 55 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4566 78999999999999999999998754
No 134
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=60.06 E-value=8.8 Score=33.90 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 176 ALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 176 aVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.-.-+.+|+|-...+.|.+.+|||+..+++...|.+.+..|.+.
T Consensus 12 yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 12 YGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33456788886655679999999999999999999999998774
No 135
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=59.98 E-value=13 Score=32.49 Aligned_cols=30 Identities=37% Similarity=0.542 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.+.+.++||+.+|+|..|++++.+.|.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999765
No 136
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=59.62 E-value=14 Score=31.61 Aligned_cols=30 Identities=40% Similarity=0.512 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.+.+.++||+.+|+|..|++++++.|.+.
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999764
No 137
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=59.41 E-value=17 Score=32.31 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
.++|+++||+.+|+|..|+.+..++|.+.-
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g 167 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRREG 167 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998753
No 138
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=59.36 E-value=14 Score=31.40 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~L 319 (510)
...+.+|||+.+|+|+.||+.++......+...
T Consensus 40 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999998887776666543
No 139
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=59.06 E-value=13 Score=32.21 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.+.+.+|||+.+|+|..|++++.+.|.+.
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999764
No 140
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=58.80 E-value=13 Score=33.78 Aligned_cols=30 Identities=37% Similarity=0.542 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.+.+.+|||+.+|+|+.|++++++.|.+.
T Consensus 39 ~~~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 39 DGKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 347899999999999999999999999765
No 141
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=58.71 E-value=12 Score=33.89 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=30.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 278 IYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 278 IYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+|+|.+--+.+++.++||+..+++...+++.+..|.+.
T Consensus 34 ~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 34 LELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45554322356899999999999999999999999764
No 142
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=58.45 E-value=12 Score=30.03 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 190 QEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 190 ~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
|.|.|++||++.++|+...+.+-++.|.+.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDV 51 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 789999999999999999999988888774
No 143
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=58.35 E-value=11 Score=32.16 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
...+.+|||+.+|+|..||+++.+.....+..
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999888777666554
No 144
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=58.30 E-value=7.2 Score=34.70 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccC
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~Li 320 (510)
...+.+|||+.+|+|+.||++++......+...+
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999988887777665544
No 145
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=58.14 E-value=39 Score=28.43 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=39.4
Q ss_pred hHHHHHhhc-CCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHH----
Q 046187 234 HMPRFCTLL-QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKV---- 308 (510)
Q Consensus 234 ~I~Rfcs~L-~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkr---- 308 (510)
++.++-..+ .|++.-.++|..|++. |..+ ...+..++|+.++||+.||-+.
T Consensus 4 i~~~I~~~~~~lt~~e~~ia~yil~~-----------~~~~-------------~~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 4 ILYKIDNQYPYFTKNEKKIAQFILNY-----------PHKV-------------VNMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHC-----------HHHH-------------TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC-----------HHHH-------------HHCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 344444443 4666666666666552 2222 3678999999999999999755
Q ss_pred ----HHHHHHhhcc
Q 046187 309 ----YKELLENWDD 318 (510)
Q Consensus 309 ----YKEL~e~l~~ 318 (510)
|++|...+..
T Consensus 60 Gf~gf~efk~~l~~ 73 (107)
T 3iwf_A 60 TPGGFNELKTRLSK 73 (107)
T ss_dssp STTHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH
Confidence 5555555544
No 146
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=57.00 E-value=14 Score=32.01 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.+.+.++||+.+|+|..|++++.+.|.+.
T Consensus 15 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 15 NAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 347899999999999999999999999764
No 147
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=56.81 E-value=3.7 Score=35.86 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCcccccCCCCccccccccceecc
Q 046187 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIA 33 (510)
Q Consensus 1 m~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vle 33 (510)
+.||+|+.--..-.|...+....+|..||+...
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 369999873222234223333499999999764
No 148
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=56.68 E-value=15 Score=32.51 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.+.+.+|||+.+|+|..|++++.+.|.+.
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456899999999999999999999999765
No 149
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=56.27 E-value=3.5 Score=33.04 Aligned_cols=25 Identities=28% Similarity=0.801 Sum_probs=18.2
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
.|| |+.. .++|...=. .-|. ||.++
T Consensus 6 ~C~-C~~~--~~~~~~~kT--~~C~-CG~~~ 30 (71)
T 1gh9_A 6 RCD-CGRA--LYSREGAKT--RKCV-CGRTV 30 (71)
T ss_dssp EET-TSCC--EEEETTCSE--EEET-TTEEE
T ss_pred ECC-CCCE--EEEcCCCcE--EECC-CCCee
Confidence 599 9984 445544444 7899 99998
No 150
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=55.84 E-value=6.2 Score=30.72 Aligned_cols=22 Identities=9% Similarity=0.188 Sum_probs=18.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q 046187 288 RKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrY 309 (510)
.++++|||+.+|||..||...+
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 4689999999999999997543
No 151
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=55.49 E-value=5.5 Score=29.95 Aligned_cols=31 Identities=26% Similarity=0.640 Sum_probs=18.0
Q ss_pred CCCCCCCCCCcccc--cCCCCc----cccccccceec
Q 046187 2 KCPYCSAAQGRCAT--TSTGRS----ITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D--~~~Gd~----~~VC~~CG~Vl 32 (510)
.||.||........ ..+.|+ -.+|.+||...
T Consensus 17 ~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 17 TCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp CCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred ECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 69999984332211 112221 16999999864
No 152
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=55.15 E-value=11 Score=36.50 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
..++.+|||+.+++|+.||+...+.+++.++.
T Consensus 211 ~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 211 RGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999998874
No 153
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=54.98 E-value=25 Score=28.38 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 276 AAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 276 AaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
+.-||-..+...++++.+||+.+|+|+.++...+++.
T Consensus 7 i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 7 IQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3345555544458999999999999999999888876
No 154
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=54.85 E-value=16 Score=32.97 Aligned_cols=30 Identities=30% Similarity=0.264 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.+.+.++||+.+|+|..|++++.+.|.+.
T Consensus 29 ~~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 29 DARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999764
No 155
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=54.60 E-value=8 Score=31.95 Aligned_cols=28 Identities=4% Similarity=0.051 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
-.++++|+|+.++||+.|||.-+.+|.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~Le~ 42 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERMEA 42 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4788999999999999999977776654
No 156
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=54.44 E-value=15 Score=29.52 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.-+.+..||++.+|++..||.+..+.|.+.
T Consensus 34 ~~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (98)
T 3jth_A 34 NQELSVGELCAKLQLSQSALSQHLAWLRRD 63 (98)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 357889999999999999999999999763
No 157
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=54.34 E-value=20 Score=29.88 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWD 317 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~ 317 (510)
...|.+|||+.+|+|..||+.....-...+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR 68 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 68 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 5799999999999999999977655444443
No 158
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=54.21 E-value=3.8 Score=31.87 Aligned_cols=21 Identities=33% Similarity=0.800 Sum_probs=16.2
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
+||.|+.++. . .+|..||...
T Consensus 8 ~C~~CgvYTL--------k--~~CP~CG~~T 28 (60)
T 2apo_B 8 KCPKCGLYTL--------K--EICPKCGEKT 28 (60)
T ss_dssp ECTTTCCEES--------S--SBCSSSCSBC
T ss_pred eCCCCCCEec--------c--ccCcCCCCcC
Confidence 5999988553 2 6899999875
No 159
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=54.09 E-value=14 Score=32.63 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 174 VEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGE 218 (510)
Q Consensus 174 ~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k 218 (510)
.+.-.-+.+|+|- ..+.|.+.+||++..+++...|.+.+..|.+
T Consensus 13 ~~yAl~~L~~La~-~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~ 56 (149)
T 1ylf_A 13 FSIAVHILSILKN-NPSSLCTSDYMAESVNTNPVVIRKIMSYLKQ 56 (149)
T ss_dssp HHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3344566677775 3556899999999999999999999999977
No 160
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=53.87 E-value=23 Score=32.11 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
.++|+++||..+|+|..|+.+..++|.+.-
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g 203 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHN 203 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998753
No 161
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=53.74 E-value=23 Score=31.40 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 36899999999999999999999999875
No 162
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=53.69 E-value=11 Score=33.32 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 277 AIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 277 aIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+|+|..-.+..++.++||+..+++...+++.+..|.+.
T Consensus 17 L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 17 MISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345554322346899999999999999999999999765
No 163
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=53.65 E-value=19 Score=31.89 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999864
No 164
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=53.62 E-value=18 Score=31.42 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.+.+.++||+.+|+|..|++++.+.|.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999764
No 165
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=53.52 E-value=23 Score=28.29 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=23.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
..+..+||..+||+..||.+..+......
T Consensus 38 g~s~~~iA~~~gIs~sTl~rW~k~~~~~~ 66 (87)
T 2elh_A 38 GESKASVARDIGVPESTLRGWCKNEDKLR 66 (87)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhcc
Confidence 37899999999999999998776655433
No 166
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=53.15 E-value=20 Score=31.94 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999875
No 167
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=53.09 E-value=5.9 Score=38.81 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCcccc--cCCCCccccccccceec
Q 046187 1 MKCPYCSAAQGRCAT--TSTGRSITECGSCGRVI 32 (510)
Q Consensus 1 m~Cp~C~~~~~~i~D--~~~Gd~~~VC~~CG~Vl 32 (510)
|.||+||..+..-.. .--.| -.|.+|+--.
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaD--F~C~~C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVAD--FYCNHCSEEF 66 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCE--EECTTTCCEE
T ss_pred CcCCCCCChhhhhccCCCcccc--cccCCcchhh
Confidence 689999985432222 23444 8999998654
No 168
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=53.03 E-value=21 Score=30.70 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=25.0
Q ss_pred HHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 283 QLEDKRKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 283 rl~g~~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
+++....++.+|++.+|+|..||.+.-+.|..
T Consensus 53 ~lL~~G~SyreIa~~tG~StaTIsRv~r~L~~ 84 (107)
T 3frw_A 53 KMLTDKRTYLDISEKTGASTATISRVNRSLNY 84 (107)
T ss_dssp HHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCccHHHHHHHHHHHHc
Confidence 34445689999999999999999876665543
No 169
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=52.94 E-value=9.3 Score=31.85 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=20.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 046187 289 KTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 289 ~t~keIa~vagVSe~TIRkrYKE 311 (510)
.+++|||+.+|||..||+..+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 79999999999999999987754
No 170
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=52.51 E-value=37 Score=30.54 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999874
No 171
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=52.18 E-value=19 Score=31.72 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 273 IAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.|.-++.+.++..+..++.++||+..+|+..++++.+..|.+.
T Consensus 15 yAl~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 15 IAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3444443333323456899999999999999999999999873
No 172
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=52.01 E-value=20 Score=28.78 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+.+..||++.++++..||++..+.|.+.
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999775
No 173
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=51.71 E-value=8.3 Score=30.98 Aligned_cols=27 Identities=19% Similarity=0.706 Sum_probs=20.8
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
.||.|+.. .+--.+.|- -.|.+||.++
T Consensus 28 ~C~fCgk~--~vkR~a~GI--W~C~~C~~~~ 54 (72)
T 3jyw_9 28 DCSFCGKK--TVKRGAAGI--WTCSCCKKTV 54 (72)
T ss_dssp CCSSCCSS--CBSBCSSSC--BCCSSSCCCC
T ss_pred cCCCCCCc--eeEecCCCe--EECCCCCCEE
Confidence 59999984 334456775 8999999976
No 174
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=51.69 E-value=21 Score=29.15 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=25.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 289 KTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 289 ~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
.+..|||+.+|||..+|+++++.|.+.-
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG 58 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSA 58 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 8899999999999999999999997743
No 175
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=51.59 E-value=67 Score=26.55 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++++.+|++.++++..||....+.|.+.
T Consensus 49 ~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 37899999999999999999999998775
No 176
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=51.41 E-value=17 Score=29.42 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
..+.+..||++.+|++..||...++.|.+.
T Consensus 34 ~~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (102)
T 3pqk_A 34 EGEFSVGELEQQIGIGQPTLSQQLGVLRES 63 (102)
T ss_dssp TCCBCHHHHHHHHTCCTTHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999663
No 177
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=51.34 E-value=21 Score=30.38 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=26.9
Q ss_pred cCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 285 EDKR-KTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 285 ~g~~-~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+.+ .|+.+||+.++++..||.+..+.|.+.
T Consensus 38 ~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 38 EPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp STTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4445 899999999999999999999988764
No 178
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=51.11 E-value=7.3 Score=28.92 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=19.1
Q ss_pred CCCCCCCCCCcccc--cCCCCcc----cccccccee
Q 046187 2 KCPYCSAAQGRCAT--TSTGRSI----TECGSCGRV 31 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D--~~~Gd~~----~VC~~CG~V 31 (510)
.||.|+........ ..++|+- .+|.+||..
T Consensus 11 ~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 11 TCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred CCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 69999985554322 3344422 699999963
No 179
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=51.03 E-value=43 Score=30.82 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 190 QEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 190 ~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
..|.|..|||+.+|++...+.|.++.|++.
T Consensus 175 ~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 175 TMPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp ECCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 368899999999999999999999999875
No 180
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=50.69 E-value=15 Score=35.03 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
...+.+|||+.+|+|+.||+.+....++.+..
T Consensus 211 ~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 211 KGLSSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999988887764
No 181
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=50.63 E-value=24 Score=28.72 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 273 IAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
|.-+.-||-..+.+.++++.+||+.+|+|..++...+++.
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344445555444478999999999999999999888864
No 182
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=50.40 E-value=20 Score=29.31 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
...+.++||+.+||+..||++.++.+.+.
T Consensus 32 ~g~s~~~ia~~lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 32 DGIRPCVISRQLRVSHGCVSKILNRYQET 60 (128)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 35789999999999999999888877654
No 183
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=50.21 E-value=23 Score=32.24 Aligned_cols=30 Identities=7% Similarity=0.027 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+..++.+++|+.++||..||++..+.|.+.
T Consensus 34 ~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~ 63 (187)
T 1j5y_A 34 KEPVSGAQLAEELSVSRQVIVQDIAYLRSL 63 (187)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345899999999999999999999999873
No 184
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=50.02 E-value=20 Score=32.23 Aligned_cols=32 Identities=6% Similarity=0.038 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~l~ 317 (510)
..++|+++||+.+|+|..|+.+..++|.+.--
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~ 207 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDEGI 207 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTS
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCCc
Confidence 35789999999999999999999999988643
No 185
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=49.86 E-value=31 Score=28.14 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 273 IAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
|..+.-||-..+ ..++++.+||+.+|+|+.++...+|+.
T Consensus 7 i~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 7 IQNVLSYITEHF-SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 444555665554 448999999999999999999888765
No 186
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=49.61 E-value=23 Score=29.30 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
..+.+..||++.+|++..||.+.++.|.+.
T Consensus 36 ~~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 36 QGERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999764
No 187
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=49.56 E-value=33 Score=27.34 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=27.4
Q ss_pred cCCCCCHHHHHHHhCCCHHH-HHHHHHHHHHh
Q 046187 285 EDKRKTQAEICKVTGLTEVT-LRKVYKELLEN 315 (510)
Q Consensus 285 ~g~~~t~keIa~vagVSe~T-IRkrYKEL~e~ 315 (510)
.+...++++||+.++++..| +....+.|.+.
T Consensus 27 ~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 27 KGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp TTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 44579999999999999999 99999988765
No 188
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=49.30 E-value=4.9 Score=33.05 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=24.2
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 287 KRK-TQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 287 ~~~-t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
..+ +.+++|+.++||..||+++++.|.+
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~~ 61 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKS 61 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455 7999999999999999999888753
No 189
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=48.90 E-value=45 Score=28.05 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=26.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
++++++||+.++++..||....+.|.+.
T Consensus 54 ~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 54 DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999999998876
No 190
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=48.72 E-value=7.4 Score=34.76 Aligned_cols=24 Identities=25% Similarity=0.732 Sum_probs=16.6
Q ss_pred CCCCCCCCCCcccccCCCCccccccccce
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGR 30 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~ 30 (510)
.||.|.+. .. +..|. .+||.+||.
T Consensus 29 ~CP~C~se-yt---YeDg~-l~vCPeC~h 52 (138)
T 2akl_A 29 PCPQCNSE-YT---YEDGA-LLVCPECAH 52 (138)
T ss_dssp CCTTTCCC-CC---EECSS-SEEETTTTE
T ss_pred CCCCCCCc-ce---EecCC-eEECCcccc
Confidence 59999882 22 23343 499999996
No 191
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=48.59 E-value=6.8 Score=37.64 Aligned_cols=27 Identities=30% Similarity=0.651 Sum_probs=19.0
Q ss_pred CCCCCCCCCCcccccCCCCcccccccccee
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRV 31 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~V 31 (510)
.||.||....--++ ..|. ..|-+||.-
T Consensus 16 ~CP~Cg~~d~~~~~-~dg~--~~C~~Cg~~ 42 (255)
T 1nui_A 16 PCDNCGSSDGNSLF-SDGH--TFCYVCEKW 42 (255)
T ss_dssp CCSSSCCSSCEEEE-TTSC--EEETTTCCE
T ss_pred cCCCCCCCCCceEe-CCCC--eecccCCCc
Confidence 69999984222233 4676 999999974
No 192
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=48.57 E-value=33 Score=32.09 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=26.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
++|+++||+.+|+|..|+.+..++|.+.-
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~G 245 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQN 245 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 68999999999999999999999998753
No 193
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=48.50 E-value=29 Score=31.69 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++|+++||+.+|+|..|+.+..++|.+.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 46899999999999999999999999764
No 194
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=48.46 E-value=5.3 Score=30.93 Aligned_cols=21 Identities=38% Similarity=0.846 Sum_probs=14.8
Q ss_pred CCCCCCCCCCcccccCCCCcccccccccee
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRV 31 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~V 31 (510)
.||+||+. .+ .- .||.+||.-
T Consensus 32 ~c~~cGe~--~~----~H---~vc~~CG~Y 52 (60)
T 3v2d_5 32 PCPECKAM--KP----PH---TVCPECGYY 52 (60)
T ss_dssp ECTTTCCE--EC----TT---SCCTTTCEE
T ss_pred ECCCCCCe--ec----ce---EEcCCCCcC
Confidence 59999883 21 22 689999964
No 195
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=47.70 E-value=41 Score=25.51 Aligned_cols=47 Identities=6% Similarity=0.084 Sum_probs=34.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCCcchhhhHHHHHhhcCCC
Q 046187 192 PRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLN 245 (510)
Q Consensus 192 PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~ 245 (510)
..+.+|||..++++...+...+..+.+.|+... -. -+..++-.+|+.
T Consensus 31 g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~------~~-~l~~~~~~~g~~ 77 (79)
T 1x3u_A 31 GLPNKSIAYDLDISPRTVEVHRANVMAKMKAKS------LP-HLVRMALAGGFG 77 (79)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCS------HH-HHHHHHHHHTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC------HH-HHHHHHHHhCCC
Confidence 458899999999999999998888888887532 12 334455556654
No 196
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=47.49 E-value=30 Score=31.46 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
..+.|+++||..+|+|..|+.+..++|.+.-
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~g 206 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAAG 206 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGGT
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4578899999999999999999999998764
No 197
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=46.96 E-value=85 Score=25.77 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.+.++++|++.++++..||....+.|.+.
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~ 70 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEES 70 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 357899999999999999999999998874
No 198
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=46.71 E-value=67 Score=26.45 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=26.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
++++++|++.++++..||....+.|.+.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999999998875
No 199
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=46.70 E-value=27 Score=27.43 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
+.+.++.||++.++++..||....+.|.+
T Consensus 36 ~~~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 36 SPGTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp CCSEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44789999999999999999999999864
No 200
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=46.59 E-value=30 Score=27.88 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.+.|..|||..++|++..|.+.+.+|.+.
T Consensus 26 ~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 26 KATTAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999774
No 201
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=46.55 E-value=25 Score=27.83 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+.++.+|++.++++..||.+..+.|.+.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999998764
No 202
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=46.45 E-value=18 Score=34.34 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
|..++..++|+.+|||..|||++++.|...
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L~~~ 76 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQLEAQ 76 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 567899999999999999999999999654
No 203
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.35 E-value=7.1 Score=32.22 Aligned_cols=27 Identities=33% Similarity=0.783 Sum_probs=21.1
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
.||.|+.. .+--.+.|- -.|.+||.++
T Consensus 37 ~CpfCGk~--~vkR~a~GI--W~C~kCg~~~ 63 (83)
T 3j21_i 37 TCPVCGRK--AVKRISTGI--WQCQKCGATF 63 (83)
T ss_dssp CCSSSCSS--CEEEEETTE--EEETTTCCEE
T ss_pred CCCCCCCc--eeEecCcCe--EEcCCCCCEE
Confidence 59999984 344467775 8999999986
No 204
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=46.27 E-value=41 Score=30.99 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 190 QEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 190 ~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
..+.|..|||+.+|++...+.|.+++|++.
T Consensus 191 ~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 191 DLKLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHHHCCcHHHHHHHHHHHHHC
Confidence 467899999999999999999999999874
No 205
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=46.23 E-value=1.6e+02 Score=26.30 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~L 319 (510)
....+.+|||+.+|+|..||+.+++.....+...
T Consensus 201 ~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 201 YEELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998887766666543
No 206
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=45.90 E-value=31 Score=30.19 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=23.1
Q ss_pred HHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 283 QLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 283 rl~g~~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
+++-..++++||++.+|+|..||.+.-+.|
T Consensus 70 klL~~G~syreIA~~~g~S~aTIsRv~r~L 99 (119)
T 3kor_A 70 KMIKQGYTYATIEQESGASTATISRVKRSL 99 (119)
T ss_dssp HHHHHTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334345999999999999999998654444
No 207
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=45.78 E-value=27 Score=27.60 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 190 QEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 190 ~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
+-+.|..|||..+++++..|.+.+..|.+.
T Consensus 29 ~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 29 GKATTAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp SSCEEHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 357899999999999999999999998774
No 208
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=45.55 E-value=33 Score=30.30 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.|.|..|||+.+|++...+.|.+++|++.
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999875
No 209
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=45.40 E-value=36 Score=28.06 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHh-CCCHHHHHHHHHHHHHHhcc
Q 046187 180 AALVQAIREAQEPRTLQEISIAA-NVPQKEIGKYIKILGEALQL 222 (510)
Q Consensus 180 ACLYIACR~~~~PrTLkEIa~vt-~VskkeIgr~yk~L~k~L~i 222 (510)
-++|++-+. +..+|.+|...+ |.+-..+..+++++.+.+..
T Consensus 36 iamyL~r~~--t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 36 MAMALAKEL--TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp HHHHHHHHH--SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 467776444 467999999999 79999999999999988754
No 210
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=45.16 E-value=38 Score=28.43 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=35.1
Q ss_pred HHHHHHhcCC-CCCHHHHHHHh-CCCHHHHHHHHHHHHHHhcc
Q 046187 182 LVQAIREAQE-PRTLQEISIAA-NVPQKEIGKYIKILGEALQL 222 (510)
Q Consensus 182 LYIACR~~~~-PrTLkEIa~vt-~VskkeIgr~yk~L~k~L~i 222 (510)
|..+|++.|. +.||.-|+..+ +-+..++...|..|.+.+.-
T Consensus 44 IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 44 ILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp HHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 5677888776 89999999998 58999999999999988764
No 211
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=45.10 E-value=41 Score=27.32 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 273 IAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
|..+.-||...+ ..++++.+||+.+|+|+.++.+.+|+.
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334445555554 457999999999999999999988875
No 212
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=44.82 E-value=43 Score=30.02 Aligned_cols=29 Identities=7% Similarity=0.121 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.|.|..|||+.+|++...+.|.+++|.+.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 68999999999999999999999999774
No 213
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=44.68 E-value=12 Score=36.71 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYK 310 (510)
...|++|||+.+|||..|+.+++.
T Consensus 8 ~~~Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 8 QYGTLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp CTTHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHC
Confidence 457899999999999999988874
No 214
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=44.59 E-value=8.7 Score=32.27 Aligned_cols=27 Identities=26% Similarity=0.678 Sum_probs=21.0
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
.||.|+.. .+--.+.|- -.|.+||.++
T Consensus 38 ~CpfCgk~--~vkR~a~GI--W~C~~Cg~~~ 64 (92)
T 3iz5_m 38 FCEFCGKF--AVKRKAVGI--WGCKDCGKVK 64 (92)
T ss_dssp CCTTTCSS--CBEEEETTE--EECSSSCCEE
T ss_pred cCcccCCC--eeEecCcce--EEcCCCCCEE
Confidence 59999984 334456775 8999999986
No 215
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=44.57 E-value=27 Score=31.00 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 269 NPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 269 sP~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKE 311 (510)
.-.-|..|++-+.++.- ...|+++||+.+|||..||-..|+.
T Consensus 21 ~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~s 62 (215)
T 2hku_A 21 TRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYGS 62 (215)
T ss_dssp HHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcCC
Confidence 34456666666666655 7899999999999999999877753
No 216
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=44.56 E-value=32 Score=30.94 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++++++||+.+|+|..|+.+..++|.+.
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 36899999999999999999999999874
No 217
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=44.49 E-value=19 Score=34.18 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=25.7
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DKRK-TQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~~~-t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
|..+ +..++|+.+|||..|||++++.|...=
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G 61 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLVEEG 61 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4567 688999999999999999999998743
No 218
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=44.46 E-value=6.2 Score=30.53 Aligned_cols=21 Identities=29% Similarity=0.861 Sum_probs=15.0
Q ss_pred CCCCCCCCCCcccccCCCCcccccccccee
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRV 31 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~V 31 (510)
.||+||+. .+ .. .||.+||.-
T Consensus 32 ~c~~cG~~--~~----pH---~vc~~CG~Y 52 (60)
T 2zjr_Z 32 ECPQCHGK--KL----SH---HICPNCGYY 52 (60)
T ss_dssp ECTTTCCE--EC----TT---BCCTTTCBS
T ss_pred ECCCCCCE--eC----Cc---eEcCCCCcC
Confidence 59999883 21 33 799999964
No 219
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=44.33 E-value=35 Score=29.53 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 268 RNPISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 268 RsP~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
..|.-|.-|++=+-.+ .|+ ..|+++||+.+|||.+||-..|+
T Consensus 7 ~~~~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~ 49 (192)
T 2zcm_A 7 HMKDKIIDNAITLFSE-KGYDGTTLDDISKSVNIKKASLYYHYD 49 (192)
T ss_dssp -CHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTCCHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCChHHHHHHCC
Confidence 3455666666655554 465 68999999999999999976664
No 220
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=44.15 E-value=29 Score=28.41 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
.+.+..+|++.+|++..||....+.|.+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999984
No 221
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=44.10 E-value=40 Score=29.99 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcC---CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 176 ALATAALVQAIREAQ---EPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 176 aVaAACLYIACR~~~---~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.-+|.-|..-+...+ .|.|..|||+.+|++...+.|.+++|++.
T Consensus 150 ~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 150 KRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp HHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 334444443333333 58899999999999999999999999874
No 222
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=44.06 E-value=32 Score=31.42 Aligned_cols=34 Identities=12% Similarity=-0.107 Sum_probs=29.0
Q ss_pred HcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q 046187 284 LEDKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317 (510)
Q Consensus 284 l~g~~~t~keIa~vagVSe~TIRkrYKEL~e~l~ 317 (510)
..|.+.|++|||+.+|++..|+..+.+.|.+.=.
T Consensus 20 ~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~ 53 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRITPRGALLHLIALEKKGY 53 (196)
T ss_dssp HHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCC
Confidence 4578899999999999999999999988876433
No 223
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=43.84 E-value=40 Score=27.81 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=47.8
Q ss_pred hhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHH---HHHHHHHHHcCCCCCHHHHHHHh-CCCHHHHH
Q 046187 231 IAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISA---AAIYLACQLEDKRKTQAEICKVT-GLTEVTLR 306 (510)
Q Consensus 231 p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAA---AaIYlAarl~g~~~t~keIa~va-gVSe~TIR 306 (510)
++..+...|..++++.+-. ...++-..|+- -|.|++-++. ..++.+|++.+ |....||.
T Consensus 3 ~~~I~~~Va~~f~i~~~dl---------------~s~~R~~~i~~aRqiamyL~r~~t--~~Sl~~IG~~fggrdHsTV~ 65 (94)
T 1j1v_A 3 IDNIQKTVAEYYKIKVADL---------------LSKRRSRSVARPRQMAMALAKELT--NHSLPEIGDAFGGRDHTTVL 65 (94)
T ss_dssp HHHHHHHHHHHTTCCHHHH---------------HSCCCCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHH---------------hCCCCCchhHHHHHHHHHHHHHHH--CcCHHHHHHHhCCCCHHHHH
Confidence 5667777888888875321 11111122222 3567776665 67899999999 89999999
Q ss_pred HHHHHHHHhhc
Q 046187 307 KVYKELLENWD 317 (510)
Q Consensus 307 krYKEL~e~l~ 317 (510)
.+++.+.+.+.
T Consensus 66 ha~~ki~~~~~ 76 (94)
T 1j1v_A 66 HACRKIEQLRE 76 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887653
No 224
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=43.83 E-value=16 Score=33.01 Aligned_cols=41 Identities=10% Similarity=0.121 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 178 ATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 178 aAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
+-+.+|+|-. .+.+.+.+|||+..+++...|.+.+..|++.
T Consensus 15 lr~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 15 VHSILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4456777754 3678999999999999999999999999774
No 225
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=43.64 E-value=57 Score=27.39 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+...++++||+.++++..||.+.++.|.+.
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 457899999999999999999999999875
No 226
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=43.46 E-value=21 Score=33.84 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=26.8
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRK-TQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~-t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
|..+ +..++|+.+|||..|||++++.|...
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 56 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQK 56 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4567 68999999999999999999999875
No 227
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=43.46 E-value=37 Score=27.84 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHh-CCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVT-GLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~va-gVSe~TIRkrYKEL~e~ 315 (510)
.-+.++.||++.+ +++..|+....+.|.+.
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~ 55 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEAD 55 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 4578999999999 99999999999998774
No 228
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=43.35 E-value=22 Score=33.17 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.9
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRK-TQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~-t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
|.++ +-.++|+.+|||..|||++++.|...
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVReAL~~L~~e 58 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLREVLQRLARD 58 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5678 68999999999999999999999864
No 229
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=43.32 E-value=6.4 Score=27.29 Aligned_cols=29 Identities=17% Similarity=0.536 Sum_probs=20.2
Q ss_pred CCCCCCCCCCcccccCCCCcccccccccee
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRV 31 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~V 31 (510)
.||.|+...+.+.- ..+.-.+.|..||..
T Consensus 2 lC~~C~~peT~l~~-~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIK-EGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEE-ETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEE-eCCcEEEEhhcCCCc
Confidence 69999996665532 234444779999975
No 230
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=43.25 E-value=26 Score=29.24 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRK 307 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRk 307 (510)
...+||+++|+.+|||..||.+
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~ 68 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLN 68 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHcCCCHHHHHH
Confidence 3578999999999999999974
No 231
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=43.06 E-value=9 Score=32.20 Aligned_cols=27 Identities=19% Similarity=0.706 Sum_probs=20.9
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
.||.|+.. .+--.+.|- -.|.+||.++
T Consensus 38 ~CpfCgk~--~vkR~a~GI--W~C~~C~~~~ 64 (92)
T 3izc_m 38 DCSFCGKK--TVKRGAAGI--WTCSCCKKTV 64 (92)
T ss_dssp CCSSSCSS--CCEEEETTE--EECTTTCCEE
T ss_pred cCCCCCCc--eeeecccce--EEcCCCCCEE
Confidence 59999974 334456775 8999999986
No 232
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=43.06 E-value=63 Score=26.69 Aligned_cols=38 Identities=3% Similarity=0.010 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 182 LYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
|++-.+..+.+.+..||+..+++++..+.+.++.|.+.
T Consensus 40 L~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 40 IDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 44444444458999999999999999999999998774
No 233
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=43.00 E-value=22 Score=34.09 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=27.5
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DKRK-TQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~~~-t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
|..+ +..++|+.+|||..|||+++++|...=
T Consensus 33 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G 64 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVARETVRQALRELLIDG 64 (248)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 5677 689999999999999999999998753
No 234
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=42.89 E-value=22 Score=33.87 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=26.7
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRK-TQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~-t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
|..+ +.+++|+.+|||..|||++++.|...
T Consensus 31 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 61 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVRQALSNLVNE 61 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4567 68999999999999999999999875
No 235
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=42.85 E-value=47 Score=30.40 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=26.9
Q ss_pred CC-CCCHHHHHHHhCCCH-HHHHHHHHHHHHh
Q 046187 286 DK-RKTQAEICKVTGLTE-VTLRKVYKELLEN 315 (510)
Q Consensus 286 g~-~~t~keIa~vagVSe-~TIRkrYKEL~e~ 315 (510)
.. ++|+++||+.+|+|. .|+.+..++|.+.
T Consensus 166 ~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 166 TLDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred EeccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 45 789999999999999 7999999999764
No 236
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=42.81 E-value=28 Score=30.45 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 173 SVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 173 s~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
+.+.-+-+.+|+|-+ .+ . +.+|||+..+++..-|.+.+..|++.
T Consensus 7 ~~~yAl~~L~~La~~-~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 7 RLAVAIHILSLISMD-EK-T-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp HHHHHHHHHHHHHTC-SC-C-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CC-C-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344455677788754 44 4 99999999999999999999988773
No 237
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=42.69 E-value=38 Score=28.70 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
...++++||+.++|+..||++.++.|.+
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999976
No 238
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=42.58 E-value=10 Score=27.86 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=18.3
Q ss_pred CCCCCCCCCCccc-ccCCCCcccccccccee
Q 046187 2 KCPYCSAAQGRCA-TTSTGRSITECGSCGRV 31 (510)
Q Consensus 2 ~Cp~C~~~~~~i~-D~~~Gd~~~VC~~CG~V 31 (510)
.|.+|+...+-.- .-..|. ++|..||+-
T Consensus 6 ~C~~C~tt~Tp~WR~gp~G~--~LCNaCGl~ 34 (46)
T 1gnf_A 6 ECVNCGATATPLWRRDRTGH--YLCNACGLY 34 (46)
T ss_dssp CCTTTCCCCCSSCBCCTTCC--CBCSHHHHH
T ss_pred CCCCcCCCCCCcCccCCCCC--ccchHHHHH
Confidence 5888887555442 223565 888888874
No 239
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=42.49 E-value=7.6 Score=31.29 Aligned_cols=27 Identities=41% Similarity=0.816 Sum_probs=20.3
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
.||.|+.. .+.-.+.|- -.|.+||.++
T Consensus 29 ~C~fCgk~--~vkR~a~GI--W~C~~C~~~~ 55 (73)
T 1ffk_W 29 KCPVCGFP--KLKRASTSI--WVCGHCGYKI 55 (73)
T ss_pred cCCCCCCc--eeEEEEeEE--EECCCCCcEE
Confidence 59999873 333356776 9999999986
No 240
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=42.37 E-value=55 Score=26.25 Aligned_cols=38 Identities=11% Similarity=-0.016 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 178 ATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKI 215 (510)
Q Consensus 178 aAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~ 215 (510)
..+.-||--...+.+.++.|||+.++++...|.+.|+.
T Consensus 5 ~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 5 ELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34445565444455899999999999999998877664
No 241
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=42.23 E-value=16 Score=35.37 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKE 311 (510)
+.|++|||+.+|||..|+++++..
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 468999999999999999887653
No 242
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=41.99 E-value=26 Score=27.44 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKV 308 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkr 308 (510)
...+|+.++|+.+||+..||.+.
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 55789999999999999999854
No 243
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=41.97 E-value=60 Score=26.93 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=27.1
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 285 ~g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+.+.++.+||+.++++.+|+....+.|.+.
T Consensus 38 ~~~~~t~~ela~~l~~~~stvs~~l~~L~~~ 68 (152)
T 1ku9_A 38 SDKPLTISDIMEELKISKGNVSMSLKKLEEL 68 (152)
T ss_dssp CSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3457999999999999999999999888764
No 244
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=41.71 E-value=1.4e+02 Score=24.74 Aligned_cols=28 Identities=29% Similarity=0.259 Sum_probs=25.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.++++||+.++++..|+....+.|.+.
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 72 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQ 72 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5999999999999999999999988764
No 245
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=41.57 E-value=24 Score=31.91 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWD 317 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~ 317 (510)
.++|+++||+.+|+|..|+.+..++|.+.--
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~ 192 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKEGY 192 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTS
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCc
Confidence 4689999999999999999999999977543
No 246
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=41.33 E-value=21 Score=32.94 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
|.+++..++|+.+|||..|||.+++.|...=
T Consensus 33 G~~L~e~~La~~lgVSRtpVREAL~~L~~eG 63 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISFTPVRDALLQLATEG 63 (218)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCEeCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 5678999999999999999999999998643
No 247
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=41.30 E-value=7.2 Score=30.29 Aligned_cols=21 Identities=33% Similarity=0.833 Sum_probs=15.2
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
+|+.||.++. . .+|..||...
T Consensus 7 ~C~~Cg~YTL--------k--~~CP~CG~~t 27 (60)
T 2aus_D 7 KCPKCGRYTL--------K--ETCPVCGEKT 27 (60)
T ss_dssp ECTTTCCEES--------S--SBCTTTCSBC
T ss_pred ECCCCCCEEc--------c--ccCcCCCCcc
Confidence 4999987542 2 6799999764
No 248
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=41.27 E-value=56 Score=29.43 Aligned_cols=30 Identities=7% Similarity=0.021 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 190 QEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 190 ~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
..+.|..|||+.+|++...+.|.++.|.+.
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 368899999999999999999999999774
No 249
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=41.06 E-value=17 Score=35.29 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 046187 289 KTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 289 ~t~keIa~vagVSe~TIRkrYK 310 (510)
.|++|||+.+|||..|+++++.
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 3789999999999999988775
No 250
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=41.05 E-value=7.4 Score=34.02 Aligned_cols=27 Identities=30% Similarity=0.710 Sum_probs=20.4
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
.||.|+.. .+.-.+.|- -.|.+||.++
T Consensus 62 tCPfCGk~--~vKR~avGI--W~C~~Cgk~f 88 (116)
T 3cc2_Z 62 ACPNCGED--RVDRQGTGI--WQCSYCDYKF 88 (116)
T ss_dssp ECSSSCCE--EEEEEETTE--EEETTTCCEE
T ss_pred cCCCCCCc--eeEecCcee--EECCCCCCEE
Confidence 59999872 333356776 9999999986
No 251
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=40.84 E-value=19 Score=31.57 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
.-|..|++-+..+ .|+ ..|+++||+.+|||.+||-..|+.
T Consensus 17 ~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~s 57 (212)
T 3knw_A 17 QHILDSGFHLVLR-KGFVGVGLQEILKTSGVPKGSFYHYFES 57 (212)
T ss_dssp HHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-cCCccCCHHHHHHHhCCChHHHHHHCCC
Confidence 4455555555444 465 699999999999999999766643
No 252
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=40.82 E-value=21 Score=30.79 Aligned_cols=38 Identities=24% Similarity=0.186 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
|..|++-+..+ .|+ ..|+++||+.+|||.+||-..|+.
T Consensus 7 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 45 (194)
T 3bqz_B 7 ILGVAKELFIK-NGYNATTTGEIVKLSESSKGNLYYHFKT 45 (194)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHTTCCHHHHHHHTSS
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 34444444433 465 689999999999999999776653
No 253
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=40.67 E-value=17 Score=31.11 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
.|..|++-+-.+ .|+ ..|+++||+.+|||.+||=..|+.
T Consensus 12 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (188)
T 3qkx_A 12 QIFSATDRLMAR-EGLNQLSMLKLAKEANVAAGTIYLYFKN 51 (188)
T ss_dssp HHHHHHHHHHHH-SCSTTCCHHHHHHHHTCCHHHHHHHSSS
T ss_pred HHHHHHHHHHHh-cCcccCCHHHHHHHhCCCcchHHHHcCC
Confidence 344555544443 565 599999999999999999766643
No 254
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=40.64 E-value=24 Score=34.33 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=27.3
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DKRK-TQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~~~-t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
|..+ +..++|+.+|||..|||+++..|.+.=
T Consensus 50 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G 81 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVALEARKVLMAEG 81 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4567 689999999999999999999998753
No 255
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=40.63 E-value=18 Score=31.94 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 273 IAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYK 310 (510)
|..|++=+..+ .|+..|+++||+.+|||..||=..|+
T Consensus 18 Il~aA~~lf~~-~G~~~t~~~IA~~agvs~~tlY~~F~ 54 (196)
T 2qwt_A 18 VLEVAYDTFAA-EGLGVPMDEIARRAGVGAGTVYRHFP 54 (196)
T ss_dssp HHHHHHHHHHH-TCTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHhCCCHHHHHHHCC
Confidence 44444433333 46789999999999999999976664
No 256
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=40.52 E-value=6.6 Score=42.93 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccCCC
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPS 322 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~Lip~ 322 (510)
...|.+|||+.+|||..||+.++..-+..|...+..
T Consensus 569 e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~~~~~ 604 (613)
T 3iyd_F 569 TDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 (613)
T ss_dssp CCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSCSSS
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhCcchh
Confidence 679999999999999999999988777777665433
No 257
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=40.40 E-value=33 Score=29.51 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=24.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
..+.++||+.+||+..||++.++.+.+.
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~~~~ 75 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRYYET 75 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 5789999999999999999998887664
No 258
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=40.09 E-value=30 Score=24.98 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=27.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Q 046187 192 PRTLQEISIAANVPQKEIGKYIKILGEALQLS 223 (510)
Q Consensus 192 PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i~ 223 (510)
..+.+|||..++++...+......+.+.|+..
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 35889999999999999998888888888753
No 259
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=40.00 E-value=36 Score=31.43 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+-+++..+||+.+|+|..||+.+.+.|.+.
T Consensus 31 ~~~~s~~eLA~~lglS~stv~~~l~~Le~~ 60 (192)
T 1uly_A 31 NKEMTISQLSEILGKTPQTIYHHIEKLKEA 60 (192)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 347899999999999999999999999764
No 260
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=39.98 E-value=25 Score=30.64 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
.-|..|++-+..+ .|+ ..|+++||+.+|||.+||=..|+.-.+
T Consensus 19 ~~Il~aa~~lf~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 62 (213)
T 2qtq_A 19 DLLLQTASNIMRE-GDVVDISLSELSLRSGLNSALVKYYFGNKAG 62 (213)
T ss_dssp HHHHHHHHHHHHH-HTSSCCCHHHHHHHHCCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHHHH-cCcccccHHHHHHHhCCChhhHhHhcCCHHH
Confidence 3455555544443 465 689999999999999999877754333
No 261
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=39.74 E-value=37 Score=30.41 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=28.0
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 189 AQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 189 ~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
-..|.|..|||+.+|++...+.|.++.|++.
T Consensus 175 ~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 175 VEIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp CCCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 3567899999999999999999999999875
No 262
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=39.34 E-value=18 Score=31.93 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
.-|..|++-+..+ .|+ ..|+++||+.+|||.+||=..|+.-
T Consensus 15 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K 56 (189)
T 3vp5_A 15 NRVYDACLNEFQT-HSFHEAKIMHIVKALDIPRGSFYQYFEDL 56 (189)
T ss_dssp HHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHH-CCcccccHHHHHHHhCCChHHHHHHCCCH
Confidence 3455566655544 465 7899999999999999997665433
No 263
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=39.28 E-value=20 Score=31.25 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
-|..|++=+..+ .|+ ..|+++||+.+|||.+||-..|+.-.+
T Consensus 18 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~ 60 (220)
T 3lhq_A 18 HILDVALRLFSQ-QGVSATSLAEIANAAGVTRGAIYWHFKNKSD 60 (220)
T ss_dssp HHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHhCCCceeehhhcCCHHH
Confidence 344555544443 375 589999999999999999877654333
No 264
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=39.13 E-value=50 Score=27.58 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=25.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 289 KTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 289 ~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+++++||+.++++..||....+.|.+.
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~ 78 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKE 78 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999988764
No 265
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=39.11 E-value=22 Score=30.05 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=35.4
Q ss_pred hHHHHHhhc-CCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 234 HMPRFCTLL-QLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 234 ~I~Rfcs~L-~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYK 310 (510)
++.++-..+ +|++.-.++|..|++. |..+ ...+.++||+.++||+.||-+..|
T Consensus 8 i~~~i~~~~~~ls~~e~~ia~yil~~-----------~~~~-------------~~~si~elA~~~~vS~aTv~Rf~k 61 (111)
T 2o3f_A 8 GLAIIQSMXHXLPPSERKLADYILAH-----------PHXA-------------IESTVNEISALANSSDAAVIRLCX 61 (111)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHC-----------HHHH-------------HTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHC-----------hHHH-------------HhcCHHHHHHHHCCCHHHHHHHHH
Confidence 444544332 4677667777776653 3322 256899999999999999986543
No 266
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=38.91 E-value=24 Score=32.75 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
|.+++..++|+.+|||..+||.+++.|...=
T Consensus 37 G~~L~E~~La~~lgVSRtpVREAl~~L~~eG 67 (222)
T 3ihu_A 37 GQRLVETDLVAHFGVGRNSVREALQRLAAEG 67 (222)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCccCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 5688899999999999999999999987643
No 267
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=38.89 E-value=48 Score=26.86 Aligned_cols=39 Identities=5% Similarity=0.042 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 177 LATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKI 215 (510)
Q Consensus 177 VaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~ 215 (510)
+..++-||--...+.+.++.+||+.++++...|.+.|+.
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 444555665444447899999999999999988877663
No 268
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=38.58 E-value=9.4 Score=32.70 Aligned_cols=27 Identities=26% Similarity=0.840 Sum_probs=20.7
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
.||.|+.. .+--.+.|- -.|.+||.++
T Consensus 38 ~CpfCgk~--~vKR~a~GI--W~C~kCg~~~ 64 (103)
T 4a17_Y 38 GCPFCGKV--AVKRAAVGI--WKCKPCKKII 64 (103)
T ss_dssp ECTTTCCE--EEEEEETTE--EEETTTTEEE
T ss_pred CCCCCCCc--eeeecCcce--EEcCCCCCEE
Confidence 49999873 344456775 8999999986
No 269
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=38.56 E-value=21 Score=30.82 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||.+||-..|+.-.+.+..
T Consensus 12 ~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 58 (206)
T 3dew_A 12 RLMEVATELFAQ-KGFYGVSIRELAQAAGASISMISYHFGGKEGLYAA 58 (206)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 455555544443 475 7999999999999999998777654444443
No 270
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=38.52 E-value=50 Score=30.05 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 190 QEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 190 ~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
..+.|..|||+.+|++...+.|.++.|++.
T Consensus 184 ~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 184 TFKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred EecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 357899999999999999999999999774
No 271
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=38.49 E-value=67 Score=25.12 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=27.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Q 046187 193 RTLQEISIAANVPQKEIGKYIKILGEALQLS 223 (510)
Q Consensus 193 rTLkEIa~vt~VskkeIgr~yk~L~k~L~i~ 223 (510)
.+.+|||..++++...+...++.+.+.|+..
T Consensus 37 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 37 LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999998888888888753
No 272
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=38.42 E-value=51 Score=27.13 Aligned_cols=32 Identities=6% Similarity=0.146 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~L 319 (510)
...++.+|++.++++..||.+..+.|.+ .+.+
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~-~Glv 75 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN-LGLV 75 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH-HCSE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH-CCCE
Confidence 3689999999999999999999999988 5544
No 273
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=38.18 E-value=22 Score=30.96 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
|..|++-+..+ .|+ ..|+++||+.+|||.+||-..|+
T Consensus 17 Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (202)
T 3lwj_A 17 ILTCSLDLFIE-KGYYNTSIRDIIALSEVGTGTFYNYFV 54 (202)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHCSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchhHHHHcC
Confidence 44455544443 476 69999999999999999976664
No 274
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=38.07 E-value=5.9 Score=39.50 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=28.3
Q ss_pred CCCCCCCCCCcccc--cCCCCccccccccce--------ecccceeecccccccccCC
Q 046187 2 KCPYCSAAQGRCAT--TSTGRSITECGSCGR--------VIAERQCQNHHLFHIRAQD 49 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D--~~~Gd~~~VC~~CG~--------Vleer~Id~~~EwR~fs~d 49 (510)
+||+|+. .+++ ...-. .||..|+. +| +.++|.++ |.++..+
T Consensus 32 kc~~~~~---~~y~~~l~~~~--~v~p~~~~~~r~~arerI-~~L~D~gs-F~El~~~ 82 (285)
T 2f9i_B 32 KCPKCKK---IMYTKELAENL--NVCFNCDHHIALTAYKRI-EAISDEGS-FTEFDKG 82 (285)
T ss_dssp ECTTTCC---EEEHHHHHHTT--TBCTTTCCBCCCCHHHHH-HHTSCTTC-CEEESTT
T ss_pred hhHhhCC---ccchhhhHHhc--CcCCCCCCCCCCCHHHHH-HHHccCCC-cEEECCC
Confidence 6999987 3333 23444 79999999 34 56777766 7777654
No 275
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=38.06 E-value=29 Score=30.22 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYK 310 (510)
.-|..|++-+..+ .|+..|+.+||+.+|||.+||-..|+
T Consensus 18 ~~Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tlY~~F~ 56 (194)
T 2q24_A 18 DKILAAAVRVFSE-EGLDAHLERIAREAGVGSGTLYRNFP 56 (194)
T ss_dssp HHHHHHHHHHHHH-HCTTCCHHHHHHHTTCCHHHHHHHCC
T ss_pred HHHHHHHHHHHHh-cCcCCCHHHHHHHhCCChHHHHHHcC
Confidence 3444454444433 46668999999999999999976654
No 276
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=37.97 E-value=21 Score=30.86 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
|..|++-+..+ .|+ ..|+++||+.+|||..||-..|+.
T Consensus 19 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (203)
T 3f1b_A 19 MLDAAVDVFSD-RGFHETSMDAIAAKAEISKPMLYLYYGS 57 (203)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHCCS
T ss_pred HHHHHHHHHHH-cCcccccHHHHHHHhCCchHHHHHHhCC
Confidence 44455444443 365 799999999999999999766643
No 277
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=37.92 E-value=57 Score=26.33 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=26.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Q 046187 193 RTLQEISIAANVPQKEIGKYIKILGEALQLS 223 (510)
Q Consensus 193 rTLkEIa~vt~VskkeIgr~yk~L~k~L~i~ 223 (510)
.+.+||+..++++...+...++.+.+.|+..
T Consensus 45 ~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 45 FTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4789999999999999988888888888753
No 278
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=37.89 E-value=40 Score=29.96 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
.++|+++||+.+|+|..|+.+..++|.+.-
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 191 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEG 191 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 467999999999999999999999998753
No 279
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.87 E-value=13 Score=34.16 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=29.1
Q ss_pred CCCCCCCCCCccc-ccCCCCccccccccceecccceeeccccccccc
Q 046187 2 KCPYCSAAQGRCA-TTSTGRSITECGSCGRVIAERQCQNHHLFHIRA 47 (510)
Q Consensus 2 ~Cp~C~~~~~~i~-D~~~Gd~~~VC~~CG~Vleer~Id~~~EwR~fs 47 (510)
.|+.|+...+.++ |...+.-.+.|..||.. +.+|.++-.-+|-
T Consensus 105 lC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~---~~V~~~~Kl~~~i 148 (157)
T 2e9h_A 105 LCPECENPETDLHVNPKKQTIGNSCKACGYR---GMLDTHHKLCTFI 148 (157)
T ss_dssp SCTTTCCSCCEEEEETTTTEEEEECSSSCCE---EECCCCSSHHHHH
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccCCCCC---Ccccchhhhhhhh
Confidence 6999999766664 33455556889999984 5666655554443
No 280
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=37.85 E-value=12 Score=28.44 Aligned_cols=7 Identities=43% Similarity=1.047 Sum_probs=3.9
Q ss_pred cccccce
Q 046187 24 ECGSCGR 30 (510)
Q Consensus 24 VC~~CG~ 30 (510)
+|..||.
T Consensus 38 ~CP~Cg~ 44 (54)
T 4rxn_A 38 VCPLCGV 44 (54)
T ss_dssp BCTTTCC
T ss_pred cCcCCCC
Confidence 5555554
No 281
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=37.72 E-value=47 Score=27.21 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
+..+++++|++.++++..||.+..+.|..
T Consensus 34 ~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp TTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999999866
No 282
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=37.69 E-value=60 Score=25.10 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
-+.+..||++.++++...+.+.++.|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999988764
No 283
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=37.69 E-value=27 Score=25.11 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrY 309 (510)
..++++++|+.+||+..||.+..
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e 35 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIE 35 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 46899999999999999998654
No 284
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=37.66 E-value=21 Score=30.65 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
.-|..|++-+..+ .|+ ..|+++||+.+|||..||-..|+.-
T Consensus 12 ~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 53 (195)
T 3ppb_A 12 QAILETALQLFVS-QGFHGTSTATIAREAGVATGTLFHHFPSK 53 (195)
T ss_dssp HHHHHHHHHHHHH-TCSTTSCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCChhHHHHHcCCH
Confidence 3455555555544 465 6899999999999999997666533
No 285
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=37.53 E-value=70 Score=28.75 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 190 QEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 190 ~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
..|.|..|||+.+|++...+.|.++.|++.
T Consensus 173 ~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 173 VLPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp EECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 457899999999999999999999999874
No 286
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=37.31 E-value=25 Score=33.20 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
|.+++..++|+.+|||..|||.+++.|...=
T Consensus 49 G~~L~e~~La~~lgVSRtpVREAL~~L~~eG 79 (239)
T 2hs5_A 49 GARLSEPDICAALDVSRNTVREAFQILIEDR 79 (239)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCEeCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 5678899999999999999999999987643
No 287
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=37.31 E-value=39 Score=27.39 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+.+..+|++.++++..||....+.|.+.
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~ 61 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQAC 61 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999998653
No 288
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=37.23 E-value=21 Score=31.34 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||..||=..|..-
T Consensus 35 ~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 75 (218)
T 3dcf_A 35 QIIKVATELFRE-KGYYATSLDDIADRIGFTKPAIYYYFKSK 75 (218)
T ss_dssp HHHHHHHHHHHH-TCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHH-cCcccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 444555544433 465 5999999999999999997666533
No 289
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=37.14 E-value=1.1e+02 Score=24.78 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHhhcccCCCCCCCCCCCCccCC
Q 046187 299 GLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFP 335 (510)
Q Consensus 299 gVSe~TIRkrYKEL~e~l~~Lip~~~~~~~~i~~~~p 335 (510)
|.+..||+..+.-|...+.-++..++++..| .+.+.
T Consensus 70 ~~s~~Ti~~~ls~lr~f~~~l~~~g~i~~nP-~~~v~ 105 (117)
T 3nrw_A 70 DVSPATLNGEMQTLKNWLEYLARIDVVDEDL-PEKVH 105 (117)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTSSCTTS-GGGCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCcccCH-HHHcc
Confidence 6889999988888888777777777766665 44433
No 290
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=37.05 E-value=1.3e+02 Score=24.81 Aligned_cols=30 Identities=23% Similarity=0.137 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.++++.+||+.++++..||....+.|.+.
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHC
Confidence 557899999999999999999999998875
No 291
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=36.94 E-value=13 Score=32.14 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 272 sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYK 310 (510)
-|..|++=+..+. ...|+++||+.+|||..||=..|+
T Consensus 18 ~Il~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (190)
T 2v57_A 18 AILDAAMLVLADH--PTAALGDIAAAAGVGRSTVHRYYP 54 (190)
T ss_dssp HHHHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHHHcC
Confidence 3444444444433 679999999999999999976664
No 292
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=36.90 E-value=26 Score=29.29 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
..+.+..+|++.+|++..||....+.|.+.
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999753
No 293
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=36.86 E-value=36 Score=27.96 Aligned_cols=39 Identities=13% Similarity=0.340 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 273 IAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
|.-+.-||-.. +..++++.+||+.+|+|+.++.+.+++.
T Consensus 9 i~~~~~~i~~~-~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 9 LTEAVSLMEAN-IEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHTC-SSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-hcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444433 3456999999999999999999888875
No 294
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=36.86 E-value=40 Score=26.96 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELL 313 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~ 313 (510)
..+..+||..+||+..||.+..+.+.
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 67999999999999999998877553
No 295
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=36.78 E-value=57 Score=27.61 Aligned_cols=29 Identities=10% Similarity=0.266 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
..+.+..+|++.+|++..||....+.|.+
T Consensus 57 ~~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 57 RSELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34689999999999999999999999988
No 296
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=36.59 E-value=34 Score=28.50 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 272 sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKE 311 (510)
-|..+.-||-..+ ..++++.+||+.+|+|+.++...+|+
T Consensus 8 ~~~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNI-AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTST-TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444444544433 34789999999999999999988776
No 297
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=36.59 E-value=40 Score=28.07 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+.++++||+.++++..|+....+.|.+.
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 58899999999999999999999998774
No 298
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=36.56 E-value=24 Score=30.84 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccC
Q 046187 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 320 (510)
Q Consensus 273 IAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~Li 320 (510)
|..|++-+..+.-=...|+++||+.+|||.+||-..|+.-.+.+..++
T Consensus 23 Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 70 (212)
T 1pb6_A 23 ILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVL 70 (212)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHhCCCHHHHHHHHH
No 299
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=36.55 E-value=32 Score=28.85 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
...+.++||+.+||+..||++.++.+
T Consensus 21 ~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 21 LNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 35789999999999999999877754
No 300
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=36.51 E-value=37 Score=29.91 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.|.|..|||+.+|++...+.|.+++|.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999874
No 301
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=36.50 E-value=19 Score=30.91 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||.+||-..|+.-.+
T Consensus 12 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~ 54 (194)
T 2g7s_A 12 DILQCARTLIIR-GGYNSFSYADISQVVGIRNASIHHHFPSKSD 54 (194)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHhCCCchHHHHHcCCHHH
Confidence 344555544443 465 589999999999999999776654333
No 302
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=36.48 E-value=63 Score=26.16 Aligned_cols=38 Identities=5% Similarity=0.053 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 177 LATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKI 215 (510)
Q Consensus 177 VaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~ 215 (510)
+..+.-||--...+ +.++.|||+.++++...|.+.|+.
T Consensus 7 i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 7 IQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44555666655444 899999999999999999877763
No 303
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=36.43 E-value=44 Score=28.64 Aligned_cols=39 Identities=8% Similarity=0.082 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHH
Q 046187 270 PISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 270 P~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrY 309 (510)
-.-|..|++=+..+ .|+ ..|+++||+.+|||.+||-..|
T Consensus 12 r~~Il~aa~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F 51 (197)
T 3rd3_A 12 RQHLLDTGYRIMAV-KGFSGVGLNEILQSAGVPKGSFYHYF 51 (197)
T ss_dssp HHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHTTTC
T ss_pred HHHHHHHHHHHHHH-CCcccCCHHHHHHHhCCChhhHHHHc
Confidence 34455555554444 475 6899999999999999995444
No 304
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=36.39 E-value=47 Score=30.09 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=27.7
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 189 AQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 189 ~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
...|.|..|||+.+|++...+.|.++.|++.
T Consensus 175 ~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 175 VTLPYDKMLIAGRLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp EECCSCTHHHHHHTTCCHHHHHHHHHHHGGG
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 3578899999999999999999999998765
No 305
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.34 E-value=43 Score=24.90 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=27.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Q 046187 193 RTLQEISIAANVPQKEIGKYIKILGEALQLS 223 (510)
Q Consensus 193 rTLkEIa~vt~VskkeIgr~yk~L~k~L~i~ 223 (510)
.+.+|||..++++...+...++.+.+.|+..
T Consensus 27 ~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 27 KTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 4899999999999999999998888888753
No 306
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=36.26 E-value=18 Score=35.19 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q 046187 288 RKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrY 309 (510)
+.|++|||+.+|||..|+++++
T Consensus 10 ~~ti~diA~~agVS~~TVSr~L 31 (344)
T 3kjx_A 10 PLTLRDVSEASGVSEMTVSRVL 31 (344)
T ss_dssp CCCHHHHHHHHCCCSHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 5789999999999999998776
No 307
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=36.17 E-value=48 Score=27.56 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=26.5
Q ss_pred cCCCCC--HHHHHHHh-CCCHHHHHHHHHHHHHh
Q 046187 285 EDKRKT--QAEICKVT-GLTEVTLRKVYKELLEN 315 (510)
Q Consensus 285 ~g~~~t--~keIa~va-gVSe~TIRkrYKEL~e~ 315 (510)
..-+.+ +.||++.+ |++..|+.+..+.|.+.
T Consensus 37 ~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 37 GNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp TSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred hcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 334555 99999999 99999999999999875
No 308
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=36.16 E-value=52 Score=28.75 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.-..++.||++.++++..|+..+.+.|.+.
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 347899999999999999999999999874
No 309
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=36.16 E-value=31 Score=32.45 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKE 311 (510)
....||.|||+.+|||..+|.+..+.
T Consensus 22 ~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 35699999999999999999986554
No 310
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=36.14 E-value=37 Score=31.01 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhC--CCHHHHHHHHHHHHHhhc
Q 046187 272 SISAAAIYLACQLEDKRKTQAEICKVTG--LTEVTLRKVYKELLENWD 317 (510)
Q Consensus 272 sIAAAaIYlAarl~g~~~t~keIa~vag--VSe~TIRkrYKEL~e~l~ 317 (510)
.+.=|+||.+ +.+++.++++++++ ++...|+....+|.+.+.
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~ 53 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYE 53 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhh
Confidence 4555666654 78999999999999 999999999999988665
No 311
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=35.99 E-value=1.2e+02 Score=26.37 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=27.3
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 285 ~g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+..+++++||+.++++..||....+.|.+.
T Consensus 65 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 95 (166)
T 3deu_A 65 LPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK 95 (166)
T ss_dssp SCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 3557999999999999999999999988764
No 312
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=35.86 E-value=24 Score=31.94 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||..||-..|+.-.+
T Consensus 47 ~Il~aA~~l~~~-~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe~ 89 (229)
T 3bni_A 47 RILDACADLLDE-VGYDALSTRAVALRADVPIGSVYRFFGNKRQ 89 (229)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHh-cChhhccHHHHHHHHCCCchhHHHHcCCHHH
Confidence 455555544443 465 599999999999999999766654333
No 313
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=35.82 E-value=1.9e+02 Score=23.94 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.++++++|++.++++..||....+.|.+.
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~ 77 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERG 77 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 457999999999999999999999998875
No 314
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=35.79 E-value=16 Score=29.52 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=21.2
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceecccceeeccccc
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLF 43 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vleer~Id~~~Ew 43 (510)
.||+|+. .++.+...-. ..|..||... .+.=...|
T Consensus 27 wCP~C~~--~~~~~~~~~~--v~C~~C~~~F---C~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSF--GFIYEREQLE--ATCPQCHQTF---CVRCKRQW 61 (86)
T ss_dssp CCSSSCC--CEECCCSCSC--EECTTTCCEE---CSSSCSBC
T ss_pred ECcCCCc--hheecCCCCc--eEeCCCCCcc---ccccCCch
Confidence 3999976 2334433333 7899999876 33344445
No 315
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=35.74 E-value=12 Score=26.97 Aligned_cols=29 Identities=21% Similarity=0.576 Sum_probs=20.0
Q ss_pred CCCCCCCCCCccc-ccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCA-TTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~-D~~~Gd~~~VC~~CG~Vl 32 (510)
.|-+|+...+-.- .-..|. .+|..||+-+
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~--~LCNaCGl~~ 32 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQ--PLCNACGLFL 32 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSC--EECHHHHHHH
T ss_pred cCCccCCCCCCccccCCCCC--cccHHHHHHH
Confidence 6889988655542 233576 8999999754
No 316
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=35.49 E-value=2.7e+02 Score=26.51 Aligned_cols=121 Identities=8% Similarity=-0.015 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhccc----CCCC-------------------CcchhhhHHHHHhhcCCC-
Q 046187 190 QEPRTLQEISIAANVPQKEIGKYIKILGEALQLS----QPIN-------------------SNSIAVHMPRFCTLLQLN- 245 (510)
Q Consensus 190 ~~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i~----~pv~-------------------~~~p~~~I~Rfcs~L~L~- 245 (510)
+-+.+.+||+..++++.-.+.+.++.|.+. |+- .+.. ......++..+... ++.
T Consensus 48 ~~~~~~~el~~~l~~~~~t~t~~l~rLe~~-G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~~~~~~eq~s~E-~~~~ 125 (250)
T 1p4x_A 48 ENTLPFKKIVSDLCYKQSDLVQHIKVLVKH-SYISKVRSKIDERNTYISISEEQREKIAERVTLFDQIIKQFNLA-DQSE 125 (250)
T ss_dssp CSEEEHHHHHHHSSSCGGGTHHHHHHHHHT-TSCEEEECSSSTTSEEEECCHHHHHHHHHHHHHHHHHHHHHHHH-TTCC
T ss_pred CCCcCHHHHHHHHCCCHhhHHHHHHHHHHC-CCEEecCCCCCCCeEEEEECHHHHHHHHHHHHHHHHHHHHHhcc-cccc
Confidence 357899999999999999999999998663 321 0100 00123344444444 432
Q ss_pred -----H---HHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 246 -----K---SAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLED-KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 246 -----~---~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g-~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
. .+...+..+-+.....---.|-+|.-. .+|.+.. ..+ ..+++++||+.++++.+|+....+.|.+.
T Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gLt~~q~--~vL~~L~-~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~ 201 (250)
T 1p4x_A 126 SQMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFVEF--TILAIIT-SQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ 201 (250)
T ss_dssp SSCSCCSHHHHHHHHHHHHHHHHHHHHHCSSCHHHH--HHHHHHH-TTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH--HHHHHHH-hCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 1 121122222211111000123333322 1222111 222 35899999999999999999999988764
No 317
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=35.26 E-value=1.2e+02 Score=24.85 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 192 PRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 192 PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
+.++.||+..+++++..+.+.++.|.+.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999999998774
No 318
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=35.06 E-value=40 Score=29.86 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 190 QEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 190 ~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
..|.|..|||+.+|++...+.|.++.|.+.
T Consensus 144 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 144 VLKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999774
No 319
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=34.81 E-value=46 Score=28.99 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 270 PISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 270 P~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
-.-|..|++-+..+ .|+ ..|+++||+.+|||..||=..|+.
T Consensus 19 r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (207)
T 2rae_A 19 QDRISTVGIELFTE-QGFDATSVDEVAEASGIARRTLFRYFPS 60 (207)
T ss_dssp HHHHHHHHHHHHHH-HCTTTSCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCcchHhhhCCC
Confidence 34455555554443 465 689999999999999999766654
No 320
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=34.78 E-value=33 Score=30.91 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=30.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 278 IYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 278 IYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
+|||.. .+..++.++||+..+|+...|++.++.|.+.=
T Consensus 19 ~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~aG 56 (162)
T 3k69_A 19 LYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKHG 56 (162)
T ss_dssp HHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTT
T ss_pred HHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 355542 35678999999999999999999999998753
No 321
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=34.57 E-value=14 Score=31.73 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
.-|..|++-+..+ .|+ ..|+++||+.+|||.+||=..|+.
T Consensus 13 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 53 (196)
T 3col_A 13 VKIQDAVAAIILA-EGPAGVSTTKVAKRVGIAQSNVYLYFKN 53 (196)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHhCC
Confidence 4455666655554 365 699999999999999999766643
No 322
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=34.48 E-value=73 Score=26.74 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=36.2
Q ss_pred HHHHHHHHcCC-CCCHHHHHHHh-CCCHHHHHHHHHHHHHhhccc
Q 046187 277 AIYLACQLEDK-RKTQAEICKVT-GLTEVTLRKVYKELLENWDDL 319 (510)
Q Consensus 277 aIYlAarl~g~-~~t~keIa~va-gVSe~TIRkrYKEL~e~l~~L 319 (510)
.|+.+|+.-|. ..+...||..+ +-++.-|++|+++|...+...
T Consensus 43 ~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 43 VILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp HHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 57788888776 67888899999 599999999999999877654
No 323
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=34.42 E-value=42 Score=29.65 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.|.|..|||+.+|++...+.|.+++|++.
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 47899999999999999999999999874
No 324
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=34.32 E-value=49 Score=28.34 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||.+||-..|+
T Consensus 11 ~Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 49 (199)
T 3qbm_A 11 RVVAQAAALFNV-SGYAGTAISDIMAATGLEKGGIYRHFE 49 (199)
T ss_dssp HHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHHHHHH-hCcCcCCHHHHHHHhCCCccHHHHhCC
Confidence 344555544443 465 58999999999999999965553
No 325
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=34.27 E-value=13 Score=34.55 Aligned_cols=45 Identities=18% Similarity=0.371 Sum_probs=30.5
Q ss_pred CCCCCCCCCCcc-cccCCCCccccccccceecccceeecccccccccCC
Q 046187 2 KCPYCSAAQGRC-ATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQD 49 (510)
Q Consensus 2 ~Cp~C~~~~~~i-~D~~~Gd~~~VC~~CG~Vleer~Id~~~EwR~fs~d 49 (510)
.|+.|+...+.+ .|...+.-.+.|..||. .+.|+..+-.-+|---
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa---~~~V~~~~kl~t~i~k 143 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGY---RGMLDTHHKLCTFILK 143 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCC---CCCSCSSSSHHHHHHT
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCC---ccccccccceeeeeee
Confidence 599999966665 33345555688999998 3456666666665543
No 326
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=34.22 E-value=49 Score=28.54 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrY 309 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||.+||=..|
T Consensus 15 ~Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F 52 (203)
T 3b81_A 15 ELANKIWDIFIA-NGYENTTLAFIINKLGISKGALYHYF 52 (203)
T ss_dssp HHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTC
T ss_pred HHHHHHHHHHHH-cCcccCcHHHHHHHhCCCchhHHHHc
Confidence 444555544443 465 6899999999999999995444
No 327
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=34.17 E-value=11 Score=27.62 Aligned_cols=7 Identities=43% Similarity=1.047 Sum_probs=4.5
Q ss_pred cccccce
Q 046187 24 ECGSCGR 30 (510)
Q Consensus 24 VC~~CG~ 30 (510)
+|..||.
T Consensus 32 ~CP~Cg~ 38 (46)
T 6rxn_A 32 CCPVCGV 38 (46)
T ss_dssp BCTTTCC
T ss_pred cCcCCCC
Confidence 6666664
No 328
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=34.15 E-value=69 Score=29.09 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYK 310 (510)
.+|+.+||+.+|||..||.+.-+
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 58999999999999999987554
No 329
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=34.15 E-value=40 Score=26.13 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=21.6
Q ss_pred HcCCCCCHHHHHHHhCCCHHHHHHHH
Q 046187 284 LEDKRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 284 l~g~~~t~keIa~vagVSe~TIRkrY 309 (510)
+....++++++|+.+||+..||.+..
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~e 52 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDLM 52 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 33457899999999999999998654
No 330
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.13 E-value=48 Score=24.72 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL 222 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i 222 (510)
...|++|||..++++...+........+.|..
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999988888777777764
No 331
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=34.09 E-value=21 Score=30.91 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLENWD 317 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~e~l~ 317 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||..||=..|+.-.+.+.
T Consensus 21 ~Il~aa~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 66 (208)
T 3cwr_A 21 SIVGAAQRLLSS-GGAAAMTMEGVASEAGIAKKTLYRFASGRADLIG 66 (208)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHH-cCHHhccHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 355555544443 465 599999999999999999877754333333
No 332
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=34.08 E-value=48 Score=28.03 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=29.7
Q ss_pred HHHHHHhcCCC-CCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 182 LVQAIREAQEP-RTLQEISIAANVPQKEIGKYIKILGE 218 (510)
Q Consensus 182 LYIACR~~~~P-rTLkEIa~vt~VskkeIgr~yk~L~k 218 (510)
||.+....+-| .|..||++.+++++..+.|.++.|.+
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444455667 89999999999999999999988876
No 333
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=34.06 E-value=69 Score=26.85 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=49.3
Q ss_pred chhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHH---HHHHHHHHHcCCCCCHHHHHHHhCCCHHHHH
Q 046187 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISA---AAIYLACQLEDKRKTQAEICKVTGLTEVTLR 306 (510)
Q Consensus 230 ~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAA---AaIYlAarl~g~~~t~keIa~vagVSe~TIR 306 (510)
+++..+...|..++++.+-.. -.+|.. .|+- -|.||+-++. ..++.+|++.+|-...||.
T Consensus 6 t~~~I~~~Va~~f~v~~~dl~--------------s~~R~~-~i~~aRqiAmYL~r~~t--~~Sl~~IG~~fgRDHsTV~ 68 (101)
T 3pvv_A 6 SAATIMAATAEYFDTTVEELR--------------GPGKTR-ALAQSRQIAMYLCRELT--DLSLPKIGQAFGRDHTTVM 68 (101)
T ss_dssp CHHHHHHHHHHHTTCCHHHHH--------------SSCCCH-HHHHHHHHHHHHHHHHC--CCCHHHHHHHTTCCHHHHH
T ss_pred CHHHHHHHHHHHHCCCHHHHh--------------CCCCCc-hhhHHHHHHHHHHHHHh--CCCHHHHHHHHCCCHHHHH
Confidence 467888888888988853210 112222 2221 3567776665 6789999999999999999
Q ss_pred HHHHHHHHhhc
Q 046187 307 KVYKELLENWD 317 (510)
Q Consensus 307 krYKEL~e~l~ 317 (510)
.+++.+.+.+.
T Consensus 69 ha~~ki~~~~~ 79 (101)
T 3pvv_A 69 YAQRKILSEMA 79 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877554
No 334
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=34.01 E-value=39 Score=31.60 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCCCC-HHHHHHHhCCCHHHHHHHHHHHHHhhc
Q 046187 286 DKRKT-QAEICKVTGLTEVTLRKVYKELLENWD 317 (510)
Q Consensus 286 g~~~t-~keIa~vagVSe~TIRkrYKEL~e~l~ 317 (510)
|.+++ ..++|+.+|||..|||.+++.|...=-
T Consensus 25 G~~LpsE~~La~~lgVSRtpVREAL~~L~~~Gl 57 (239)
T 2di3_A 25 GDHLPSERALSETLGVSRSSLREALRVLEALGT 57 (239)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTS
T ss_pred CCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 56784 789999999999999999999886533
No 335
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=33.93 E-value=11 Score=29.65 Aligned_cols=29 Identities=21% Similarity=0.576 Sum_probs=19.1
Q ss_pred CCCCCCCCCCccc-ccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCA-TTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~-D~~~Gd~~~VC~~CG~Vl 32 (510)
.|-+|+...+-.- .-.+|. ++|..||+-+
T Consensus 11 ~C~~C~t~~Tp~WR~gp~G~--~LCNaCGl~~ 40 (66)
T 4gat_A 11 TCTNCFTQTTPLWRRNPEGQ--PLCNACGLFL 40 (66)
T ss_dssp CCTTTCCCCCSSCEEETTTE--EECHHHHHHH
T ss_pred CCCCCCCCCCCcCCcCCCCC--CccHHHHHHH
Confidence 5888887555441 123565 8888888865
No 336
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=33.76 E-value=80 Score=26.09 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 182 LVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 182 LYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
|++-.+..+-+.++.||+..+++++..+.+.++.|.+.
T Consensus 37 L~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 37 LGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp HHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 33333333368999999999999999999999998774
No 337
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=33.58 E-value=1.4e+02 Score=24.99 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=26.7
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 285 ~g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+..+++++|++.++++..|+....+.|.+.
T Consensus 51 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 81 (150)
T 3fm5_A 51 QAEGVNQRGVAATMGLDPSQIVGLVDELEER 81 (150)
T ss_dssp STTCCCSHHHHHHHTCCHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 4556899999999999999999988888653
No 338
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=33.51 E-value=87 Score=27.06 Aligned_cols=30 Identities=7% Similarity=0.031 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.++++++|++.++++..||....+.|.+.
T Consensus 60 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 89 (168)
T 3u2r_A 60 PEGMATLQIADRLISRAPDITRLIDRLDDR 89 (168)
T ss_dssp TSCEEHHHHHHHC---CTHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 468999999999999999999999988763
No 339
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=33.41 E-value=34 Score=24.83 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrY 309 (510)
...++++++|+.+||+..||.+..
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~e 35 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQLE 35 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 346899999999999999998643
No 340
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=33.37 E-value=24 Score=30.49 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
|..|++-+..+ .|+ ..|+++||+.+|||.+||-..|+
T Consensus 22 Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 59 (206)
T 3kz9_A 22 LMEIALEVFAR-RGIGRGGHADIAEIAQVSVATVFNYFP 59 (206)
T ss_dssp HHHHHHHHHHH-SCCSSCCHHHHHHHHTSCHHHHHHHCC
T ss_pred HHHHHHHHHHh-cCcccccHHHHHHHhCCCHHHHHHHcC
Confidence 55555544443 476 49999999999999999976654
No 341
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.31 E-value=57 Score=25.17 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHh-----CCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVT-----GLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~va-----gVSe~TIRkrYKEL~e~ 315 (510)
...+..||++.+ +|+..||.+..+.|.+.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 578999999999 99999999888888764
No 342
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=33.30 E-value=55 Score=28.26 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
|..|++-+-++ .|+ ..|+.+||+.+|||.+||=..|+
T Consensus 8 Il~aA~~lf~~-~G~~~~s~~~IA~~agvsk~t~Y~~F~ 45 (190)
T 3vpr_A 8 ILEEAAKLFTE-KGYEATSVQDLAQALGLSKAALYHHFG 45 (190)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 33444433332 376 58899999999999999977664
No 343
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=33.09 E-value=27 Score=29.70 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||.+||=..|+
T Consensus 16 ~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 54 (177)
T 3kkc_A 16 AIYNAFISLLQE-NDYSKITVQDVIGLANVGRSTFYSHYE 54 (177)
T ss_dssp HHHHHHHHHTTT-SCTTTCCHHHHHHHHCCCHHHHTTTCS
T ss_pred HHHHHHHHHHHh-CChhHhhHHHHHHHhCCcHhhHHHHcC
Confidence 344444433332 365 68999999999999999965553
No 344
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=33.06 E-value=33 Score=29.27 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||.+||-..|+
T Consensus 14 ~Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 52 (191)
T 3on4_A 14 RILAVAEALIQK-DGYNAFSFKDIATAINIKTASIHYHFP 52 (191)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-hCcccCCHHHHHHHhCCCcchhhhcCC
Confidence 344444444433 465 59999999999999999976664
No 345
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=32.99 E-value=57 Score=29.69 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 181 CLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.|.-..++++.|.|++||++.++++...+.+.++.|.+.
T Consensus 13 ~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~ 51 (196)
T 3k2z_A 13 FIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKK 51 (196)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC
Confidence 344455678899999999999999988777777666553
No 346
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=32.95 E-value=54 Score=27.10 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVT-GLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~va-gVSe~TIRkrYKEL~e~ 315 (510)
.+.++.+|++.+ +++..|+....+.|.+.
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~ 63 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKD 63 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 478999999999 99999999999998874
No 347
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=32.93 E-value=88 Score=25.22 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 177 LATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKI 215 (510)
Q Consensus 177 VaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~ 215 (510)
+..++-||.-.. ..+.++.|||+.++++...|.+.|+.
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 444555555443 45799999999999999988877763
No 348
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=32.74 E-value=44 Score=29.14 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
.|..||+-+-++ .|+ ..|+.+||+.+|||.+||=..|+
T Consensus 16 ~Il~aA~~lf~e-~G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 16 AILSASYELLLE-SGFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-cCcccccHHHHHHHcCCCHHHHHHHCC
Confidence 344444443333 465 68999999999999999987775
No 349
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=32.65 E-value=22 Score=27.04 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=18.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 046187 289 KTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 289 ~t~keIa~vagVSe~TIRkrYK 310 (510)
++.+|+|+.+|||..||.+..+
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHH
Confidence 5789999999999999986543
No 350
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=32.50 E-value=52 Score=26.11 Aligned_cols=33 Identities=24% Similarity=0.134 Sum_probs=28.3
Q ss_pred HhcCCCCCHHHHHHHhCCCHHH-HHHHHHHHHHH
Q 046187 187 REAQEPRTLQEISIAANVPQKE-IGKYIKILGEA 219 (510)
Q Consensus 187 R~~~~PrTLkEIa~vt~Vskke-Igr~yk~L~k~ 219 (510)
...+.+.++.||+..+++++.. +.+.++.|.+.
T Consensus 25 ~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 25 EKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 3455579999999999999999 99999988774
No 351
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=32.47 E-value=15 Score=28.64 Aligned_cols=30 Identities=20% Similarity=0.557 Sum_probs=19.0
Q ss_pred CCCCCCCCCCccc-ccCCCCccccccccceecc
Q 046187 2 KCPYCSAAQGRCA-TTSTGRSITECGSCGRVIA 33 (510)
Q Consensus 2 ~Cp~C~~~~~~i~-D~~~Gd~~~VC~~CG~Vle 33 (510)
.|-+|+...+-+- .-..|. ++|..||+-+.
T Consensus 9 ~C~~C~tt~Tp~WR~gp~G~--~LCNACGl~~~ 39 (63)
T 3dfx_A 9 SCANCQTTTTTLWRRNANGD--PVCNACGLYYK 39 (63)
T ss_dssp CCTTTCCSCCSSCCCCTTSC--CCCHHHHHHHH
T ss_pred cCCCcCCCCCCccCCCCCCC--chhhHHHHHHH
Confidence 5888887555442 233465 78888887653
No 352
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=32.38 E-value=36 Score=31.78 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+..+++++||+.++|+..|+.+..+.|.+.
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 456899999999999999999999999875
No 353
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=32.38 E-value=26 Score=30.92 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
.-|..|++-+..+ .|+ ..|+++||+.+|||.+||=..|+.
T Consensus 33 ~~Il~aA~~l~~~-~G~~~~t~~~IA~~aGvs~~t~Y~~F~s 73 (222)
T 3bru_A 33 QSLIRAGLEHLTE-KGYSSVGVDEILKAARVPKGSFYHYFRN 73 (222)
T ss_dssp HHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-cCCCcCcHHHHHHHhCCCcchhhhhCCC
Confidence 3455555555544 575 689999999999999999766653
No 354
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=32.32 E-value=32 Score=25.69 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYK 310 (510)
..++++++|+.+||+..||.+..+
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 467999999999999999986543
No 355
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=32.30 E-value=74 Score=26.64 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q 046187 180 AALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQL 222 (510)
Q Consensus 180 ACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i 222 (510)
-++|++.+. +..+|.+|...+|-+-..+..+++++.+.+..
T Consensus 40 iAmYL~r~~--t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 40 IAMYLCREL--TDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp HHHHHHHHH--CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 567776554 56799999999998888999999999988764
No 356
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=32.26 E-value=81 Score=28.25 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 190 QEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 190 ~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
..|.|..|||+.+|++...+.|.++.|++.
T Consensus 175 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 175 THDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp ECCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 357899999999999999999999999874
No 357
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.23 E-value=58 Score=28.72 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
-|..||+-+-++ .|+ ..|+++||+.+|||.+||=..|+
T Consensus 12 ~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 12 RIFEAAVAEFAR-HGIAGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp HHHHHHHHHHHH-HTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 344444444333 465 68999999999999999987775
No 358
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=32.19 E-value=66 Score=26.79 Aligned_cols=74 Identities=8% Similarity=-0.000 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCCccCCccHH---HHHHHHHHHHHHhcCCCCCHHHHHHHhC--CCHHHHHHH
Q 046187 138 QIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVE---ALATAALVQAIREAQEPRTLQEISIAAN--VPQKEIGKY 212 (510)
Q Consensus 138 ~I~~ic~~L~LP~~VidtA~~LyK~a~e~~~lrGRs~e---aVaAACLYIACR~~~~PrTLkEIa~vt~--VskkeIgr~ 212 (510)
.+.++|..|+++..++..-..-|+..-. ....|+... ......+-+ + .+-..+..+|+..++ ++...|.+.
T Consensus 24 s~~~ia~~lgis~~Tv~r~~~~~~~~g~-~~~~gr~~~l~~~~~~~i~~~-~--~~~~~s~~~i~~~lg~~~s~~tV~r~ 99 (141)
T 1u78_A 24 SLHEMSRKISRSRHCIRVYLKDPVSYGT-SKRAPRRKALSVRDERNVIRA-A--SNSCKTARDIRNELQLSASKRTILNV 99 (141)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHSGGGTTC-CCCCCCCCSSCHHHHHHHHHH-H--HHCCCCHHHHHHHTTCCSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHcccccCC-cCCCCCCCcCCHHHHHHHHHH-H--hCCCCCHHHHHHHHCCCccHHHHHHH
Confidence 4567899999998777654444432111 112344321 111222212 2 223478999999887 677777766
Q ss_pred HHH
Q 046187 213 IKI 215 (510)
Q Consensus 213 yk~ 215 (510)
++.
T Consensus 100 l~~ 102 (141)
T 1u78_A 100 IKR 102 (141)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 359
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=32.19 E-value=72 Score=26.43 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=27.5
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 285 ~g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+.+.++.+|++.++++..||....+.|.+.
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~ 79 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQ 79 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 3557899999999999999999999998874
No 360
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=32.14 E-value=64 Score=27.44 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=26.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
++++.+|++.++++..||....+.|.+.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 7899999999999999999999998875
No 361
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=32.12 E-value=53 Score=28.78 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
-|..|++-+-++ .|+ ..|+++||+.+|||..||=..|+
T Consensus 15 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~ 53 (212)
T 2ras_A 15 RLVDVAQAIVEE-RGGAGLTLSELAARAGISQANLSRYFE 53 (212)
T ss_dssp HHHHHHHHHHHH-HTSSCCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHHHHHH-hCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 344444444443 465 68999999999999999965553
No 362
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=32.02 E-value=42 Score=24.96 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrY 309 (510)
..++++++|+.+||+..||.+..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e 44 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVE 44 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHH
Confidence 46789999999999999887543
No 363
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=31.96 E-value=37 Score=24.78 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrY 309 (510)
...++++++|+.+||+..||.+..
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e 37 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIE 37 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Confidence 346899999999999999998643
No 364
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=31.82 E-value=22 Score=27.78 Aligned_cols=24 Identities=25% Similarity=0.729 Sum_probs=15.2
Q ss_pred CCCCCCCCCCcccccCCCCccccccccce
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGR 30 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~ 30 (510)
+|.+||... . .+ .++ ..-|.+||.
T Consensus 23 ~C~~Cg~~~-~-l~--~~~-~iRC~~CG~ 46 (63)
T 3h0g_L 23 LCADCGARN-T-IQ--AKE-VIRCRECGH 46 (63)
T ss_dssp BCSSSCCBC-C-CC--SSS-CCCCSSSCC
T ss_pred ECCCCCCee-e-cC--CCC-ceECCCCCc
Confidence 588897732 1 22 333 378999986
No 365
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=31.79 E-value=45 Score=29.18 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
.-|..|++-+-.+ .|+ ..|+++||+.+|||.+||=..|+
T Consensus 14 ~~Il~aA~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 53 (216)
T 3f0c_A 14 ELIINAAQKRFAH-YGLCKTTMNEIASDVGMGKASLYYYFP 53 (216)
T ss_dssp HHHHHHHHHHHHH-HCSSSCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCCCcCCHHHHHHHhCCCHHHHHHHcC
Confidence 3455555544433 476 68999999999999999976664
No 366
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=31.75 E-value=32 Score=30.45 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||..||=..|+.-.+.+
T Consensus 19 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~sKe~L~ 63 (221)
T 3c2b_A 19 AVLDQALRLLVE-GGEKALTTSGLARAANCSKESLYKWFGDRDGLL 63 (221)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCCCHHHHH
Confidence 345555544443 465 58999999999999999988876433333
No 367
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=31.74 E-value=56 Score=28.07 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
|..|++-+..+ .|+ ..|+++||+.+|||.+||-..|.
T Consensus 13 Il~aA~~l~~~-~G~~~~t~~~IA~~Agvs~~tly~~F~ 50 (194)
T 3dpj_A 13 IVAAADELFYR-QGFAQTSFVDISAAVGISRGNFYYHFK 50 (194)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHHCCChHHHHHHcC
Confidence 44444444443 475 68999999999999999976664
No 368
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=31.73 E-value=54 Score=27.57 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
..+.+..+|++.+|++..||....+.|.+
T Consensus 54 ~~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 54 DEELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34689999999999999999999999984
No 369
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=31.66 E-value=38 Score=25.67 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=19.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 046187 289 KTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 289 ~t~keIa~vagVSe~TIRkrYKE 311 (510)
++.+||++.+|||..||.+..++
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 67899999999999999766553
No 370
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=31.64 E-value=52 Score=25.96 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=20.4
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHH
Q 046187 285 EDKRKTQAEICKVTGLTEVTLRKV 308 (510)
Q Consensus 285 ~g~~~t~keIa~vagVSe~TIRkr 308 (510)
....++++++|+.+||+..||.+.
T Consensus 19 ~~~glsq~~lA~~~gis~~~is~~ 42 (94)
T 2kpj_A 19 AKSEKTQLEIAKSIGVSPQTFNTW 42 (94)
T ss_dssp TTSSSCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 345789999999999999999764
No 371
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=31.56 E-value=56 Score=25.70 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 190 QEPRTLQEISIAANVPQKEIGKYIKILGE 218 (510)
Q Consensus 190 ~~PrTLkEIa~vt~VskkeIgr~yk~L~k 218 (510)
+-+.+..||+..+++++..+.+.++.|.+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55789999999999999999999988865
No 372
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=31.46 E-value=43 Score=24.95 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrY 309 (510)
...++++++|+.+||+..||.+..
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e 41 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMF 41 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 356889999999999999997643
No 373
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=31.32 E-value=30 Score=26.53 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKV 308 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkr 308 (510)
..+|++++|+.+||+..||.+.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~ 45 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAAL 45 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHH
Confidence 4678999999999999999864
No 374
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=31.32 E-value=45 Score=28.51 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 270 PISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 270 P~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
-.-|..|++-+..+ .|+ ..|+++||+.+|||.+||=..|+
T Consensus 10 r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (183)
T 1zk8_A 10 LQKIVETAAEIADA-NGVQEVTLASLAQTLGVRSPSLYNHVK 50 (183)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHHHHHHHh-cCccccCHHHHHHHcCCCchHHHHHcC
Confidence 34555555554444 465 58999999999999999954443
No 375
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=31.31 E-value=57 Score=27.46 Aligned_cols=29 Identities=7% Similarity=0.165 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++++.+|++.++++..|+....+.|.+.
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 37899999999999999999999998875
No 376
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=31.19 E-value=28 Score=30.34 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||..||-..|..
T Consensus 8 ~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (185)
T 2yve_A 8 MILRTAIDYIGE-YSLETLSYDSLAEATGLSKSGLIYHFPS 47 (185)
T ss_dssp HHHHHHHHHHHH-SCSTTCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-cChhhccHHHHHHHhCCChHHHHHhCcC
Confidence 344555544433 465 689999999999999999777653
No 377
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=31.17 E-value=38 Score=30.55 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccCCC
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPS 322 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~e~l~~Lip~ 322 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||..||-..|+.-.+.+..++..
T Consensus 43 ~Il~AA~~lf~e-~G~~~~tv~~IA~~AGvs~~tlY~~F~sKe~Ll~av~~~ 93 (214)
T 2guh_A 43 LIVDAAGRAFAT-RPYREITLKDIAEDAGVSAPLIIKYFGSKEQLFDALVDF 93 (214)
T ss_dssp HHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH-cChhhcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444433 465 48999999999999999998887665555555443
No 378
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=31.15 E-value=38 Score=24.42 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrY 309 (510)
..++++++|+.+||+..||.+..
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e 39 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWE 39 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHH
Confidence 46799999999999999998643
No 379
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=31.12 E-value=38 Score=26.54 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+.+..+|++.++++..||....+.|.+.
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 36899999999999999999999998875
No 380
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=31.06 E-value=19 Score=35.15 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=19.9
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceecccc
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIAER 35 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vleer 35 (510)
.||.||..... .+ .|. -.+|.+||.+.=.+
T Consensus 109 fC~~CG~~~~~-~~--~~~-~~~C~~C~~~~yp~ 138 (269)
T 1vk6_A 109 YCGYCGHEMYP-SK--TEW-AMLCSHCRERYYPQ 138 (269)
T ss_dssp BCTTTCCBEEE-CS--SSS-CEEESSSSCEECCC
T ss_pred ccccCCCcCcc-CC--Cce-eeeCCCCCCEecCC
Confidence 59999984322 22 332 48999999976554
No 381
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=30.89 E-value=23 Score=30.71 Aligned_cols=30 Identities=20% Similarity=0.509 Sum_probs=18.6
Q ss_pred CCCCCCCCCCcccc--cCCCCcc----cccccccee
Q 046187 2 KCPYCSAAQGRCAT--TSTGRSI----TECGSCGRV 31 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D--~~~Gd~~----~VC~~CG~V 31 (510)
.||.||........ ..++|+- .+|.+||..
T Consensus 74 ~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~ 109 (122)
T 1twf_I 74 ECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHI 109 (122)
T ss_dssp CCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCE
T ss_pred CCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCE
Confidence 69999986544332 2233311 689999974
No 382
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=30.87 E-value=46 Score=24.47 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKV 308 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkr 308 (510)
...++++++|+.+||+..||.+.
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~ 46 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGV 46 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 35689999999999999999764
No 383
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=30.84 E-value=26 Score=31.04 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
|..|++-+..+ .|+ ..|+++||+.+|||..||=..|+
T Consensus 28 Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 65 (214)
T 2zb9_A 28 VLHAVGELLLT-EGTAQLTFERVARVSGVSKTTLYKWWP 65 (214)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHHCCCHHHHHHHCC
Confidence 44444433333 465 68999999999999999976664
No 384
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=30.77 E-value=25 Score=30.72 Aligned_cols=41 Identities=22% Similarity=0.134 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
|..|++-+..+ .|+ ..|+++||+.+||+..||-..|+.-.+
T Consensus 31 Il~aA~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 72 (217)
T 3mvp_A 31 ILQVAKDLFSD-KTYFNVTTNEIAKKADVSVGTLYAYFASKED 72 (217)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHH-cCccccCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 45555544443 475 699999999999999999877654333
No 385
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=30.75 E-value=30 Score=29.02 Aligned_cols=28 Identities=14% Similarity=0.065 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
.+.+..+|++.+|++..||.+.++.|.+
T Consensus 33 ~~~~~~eLa~~lgis~stvs~~L~~L~~ 60 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp TCCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678899999999999999999998876
No 386
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=30.73 E-value=67 Score=27.95 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 273 IAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.|.-++.+.++..+ . +.++||+..+++...+++.+..|.+.
T Consensus 10 yAl~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 10 VAIHILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp HHHHHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444433333344 5 99999999999999999999998764
No 387
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=30.62 E-value=52 Score=31.13 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLENWD 317 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~l~ 317 (510)
+.+++.++||+.++||+.|++...+.|.+.=-
T Consensus 28 ~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GL 59 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEGSVRTLLRKLSHLDI 59 (200)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 46788999999999999999999999987543
No 388
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=30.60 E-value=78 Score=27.05 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 269 NPISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 269 sP~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
.-.-|..|++-+..+ .|+ ..|+++||+.+|||..||=..|+
T Consensus 12 ~r~~il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 53 (196)
T 3he0_A 12 KRDQILAAAEQLIAE-SGFQGLSMQKLANEAGVAAGTIYRYFS 53 (196)
T ss_dssp CHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCcchHHHhcC
Confidence 334555555555544 375 59999999999999999965443
No 389
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=30.60 E-value=41 Score=26.84 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
..+++.+||+.++++..|+....+.|.+.
T Consensus 29 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 57 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPHSYVWLIIKKFEEA 57 (95)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34899999999999999999999888764
No 390
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=30.60 E-value=57 Score=29.33 Aligned_cols=36 Identities=8% Similarity=0.206 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrY 309 (510)
|..|++-+..+ .|+ ..|+++||+.+|||..||=..|
T Consensus 35 Il~aA~~lf~~-~G~~~~t~~~IA~~Agvs~~t~Y~~F 71 (230)
T 2iai_A 35 LLSVAVQVFIE-RGYDGTSMEHLSKAAGISKSSIYHHV 71 (230)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHTTTC
T ss_pred HHHHHHHHHHH-cCccccCHHHHHHHHCCChhHHHHhC
Confidence 44444444443 475 5899999999999999995444
No 391
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=30.56 E-value=50 Score=29.17 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 272 sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKE 311 (510)
-|..|++-+.++ .|+..|+++||+.+|||..||-..|+.
T Consensus 16 ~Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tiY~~F~s 54 (224)
T 1t33_A 16 QLIAAALAQFGE-YGLHATTRDIAALAGQNIAAITYYFGS 54 (224)
T ss_dssp HHHHHHHHHHHH-HGGGSCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHhcCC
Confidence 344455544443 364488999999999999999877753
No 392
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=30.37 E-value=20 Score=33.25 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=24.3
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceecccceeecccccccc
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIR 46 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vleer~Id~~~EwR~f 46 (510)
.||.|.. .+++...|. ..|-.||.. . .++||..
T Consensus 44 ACp~CnK---KV~~~~~g~--~~CekC~~~-~------~~~~RYi 76 (172)
T 3u50_C 44 RCTCQGK---SVLKYHGDS--FFCESCQQF-I------NPQVHLM 76 (172)
T ss_dssp ECTTSCC---CEEEETTTE--EEETTTTEE-C------CCEEEEC
T ss_pred hchhhCC---EeeeCCCCe--EECCCCCCC-C------CceEEEE
Confidence 4999977 345667787 999999997 3 3666653
No 393
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=30.32 E-value=50 Score=28.10 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=26.5
Q ss_pred CCCHHHHHHHh--CCCHHHHHHHHHHHHHh
Q 046187 288 RKTQAEICKVT--GLTEVTLRKVYKELLEN 315 (510)
Q Consensus 288 ~~t~keIa~va--gVSe~TIRkrYKEL~e~ 315 (510)
+.+..+||+.+ ++|..+|+++.+.|.+.
T Consensus 27 ~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 27 NGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 89999999999 99999999999999885
No 394
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=30.32 E-value=41 Score=24.96 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrY 309 (510)
..++++++|+.+||+..||.+..
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e 44 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWC 44 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 46899999999999999997643
No 395
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=30.29 E-value=82 Score=26.81 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+..+++++|++.++++..||....+.|.+.
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 447999999999999999999999998876
No 396
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=30.24 E-value=53 Score=34.67 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCCh
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNP 270 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP 270 (510)
-+.|.+|+|..++|+.+.|.+.++.|...|+....+.. .+-.-.|........ ..+..... |
T Consensus 31 ~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~-------~~~Gy~L~~~~~~~~--~~~~~~~~---------~ 92 (485)
T 3sqn_A 31 PQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIET-------DSSGIRLRNQGNAQT--NELWSLFL---------P 92 (485)
T ss_dssp CSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEE-------ETTEEEEEEC---CT--HHHHHHHG---------G
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEE-------cCCEEEEecCcHHHH--HHHHHhcC---------H
Confidence 35899999999999999999999999888732111000 000001111111000 01111111 1
Q ss_pred HHHHHHHHHHHHHHc-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 271 ISISAAAIYLACQLE-DKRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 271 ~sIAAAaIYlAarl~-g~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
..- ..|+...++ ...++..++|+...||..||.+-.+++.+.+..
T Consensus 93 ~eR---~~~Il~~LL~~~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~~ 138 (485)
T 3sqn_A 93 QSI---SIQLLKELLFTKELVTTSFLSTSGVSYETLKRHIKKMNQALRD 138 (485)
T ss_dssp GSH---HHHHHHHHHHCSEEEHHHHHHHHTCCHHHHHHHHHHHHHHHGG
T ss_pred HHH---HHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 111 112333332 457899999999999999999999999988765
No 397
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=30.18 E-value=34 Score=25.50 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=18.3
Q ss_pred CCHHHHHHHhCCCHHHHHHH
Q 046187 289 KTQAEICKVTGLTEVTLRKV 308 (510)
Q Consensus 289 ~t~keIa~vagVSe~TIRkr 308 (510)
.++.++|+.+|||..||.+.
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~w 30 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHH
Confidence 48999999999999999875
No 398
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=29.94 E-value=59 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=27.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
..+.++||+.+++|+.||+...+.|++.++.
T Consensus 169 g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 169 GLPNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3578999999999999999999999988864
No 399
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=29.87 E-value=57 Score=28.09 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
..+++.++|+.++|+..||++.++.|.+.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999876
No 400
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=29.83 E-value=72 Score=29.71 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.|.|..|||+.+|++...+.|.+++|++.
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999874
No 401
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=29.82 E-value=52 Score=28.72 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
.-|..|++-+..+ .|+ ..|+++||+.+|||.+||=..|+
T Consensus 13 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 52 (216)
T 3s5r_A 13 ELLLDAATTLFAE-QGIAATTMAEIAASVGVNPAMIHYYFK 52 (216)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHHTTTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCcccCCHHHHHHHHCCCHHHHHHHcC
Confidence 3455555544443 475 58999999999999999977664
No 402
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=29.80 E-value=62 Score=28.43 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrY 309 (510)
|..||+-+-++ .|+ ..|+++||+.+|||.+||=..|
T Consensus 19 Il~aA~~lf~~-~G~~~~s~~~IA~~agvsk~tlY~yF 55 (199)
T 3crj_A 19 IMQATYRALRE-HGYADLTIQRIADEYGKSTAAVHYYY 55 (199)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCChhHHhhhc
Confidence 44444433333 465 6899999999999999995444
No 403
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=29.59 E-value=11 Score=36.45 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
+.|++|||+.+|||..|+++++..-
T Consensus 5 ~~ti~diA~~agVS~~TVSrvln~~ 29 (332)
T 2o20_A 5 TTTIYDVARVAGVSMATVSRVVNGN 29 (332)
T ss_dssp -------------------------
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCC
Confidence 5689999999999999999988753
No 404
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=29.56 E-value=80 Score=26.42 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++++++|++.++++..||....+.|.+.
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERN 83 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 37899999999999999999999998875
No 405
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.54 E-value=79 Score=27.82 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIK 214 (510)
Q Consensus 172 Rs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk 214 (510)
..++.|..|++-+-.+.- ...|+++|+..+||++..|-+.|.
T Consensus 20 ~~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 20 QTRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp CHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcC
Confidence 356678888887777777 889999999999998877766654
No 406
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=29.49 E-value=52 Score=28.27 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYK 310 (510)
.-|..|++-+.++ .|+..|+++||+.+|||..||-..|+
T Consensus 12 ~~Il~aA~~lf~~-~G~~~t~~~IA~~aGvs~~tly~~F~ 50 (190)
T 3jsj_A 12 ERLLEAAAALTYR-DGVGIGVEALCKAAGVSKRSMYQLFE 50 (190)
T ss_dssp HHHHHHHHHHHHH-HCTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHHcC
Confidence 3444455444443 36558899999999999999976664
No 407
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=29.47 E-value=63 Score=26.68 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+.++.+|++.++++..||....+.|.+.
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~ 72 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999875
No 408
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=29.47 E-value=40 Score=31.26 Aligned_cols=27 Identities=19% Similarity=0.039 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELL 313 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~ 313 (510)
-.++..|+|+.++||+.|||.-..||.
T Consensus 25 ~~~~~~~la~~~~vs~~TiRrDl~eL~ 51 (190)
T 4a0z_A 25 PFITDHELSDLFQVSIQTIRLDRTYLN 51 (190)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred CCEeHHHHHHHHCCCHHHHHHHHHHhc
Confidence 458999999999999999998777664
No 409
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=29.39 E-value=30 Score=29.55 Aligned_cols=45 Identities=18% Similarity=0.061 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH-HHHhhc
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE-LLENWD 317 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE-L~e~l~ 317 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||..||-..|+. -.+.+.
T Consensus 10 ~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~ 56 (191)
T 1sgm_A 10 KILHTASRLSQL-QGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAI 56 (191)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHH
T ss_pred HHHHHHHHHHHH-cCccccCHHHHHHHHCCCchhHHHHccccHHHHHH
Confidence 455555555544 465 689999999999999999888875 444333
No 410
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=29.36 E-value=38 Score=25.63 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKV 308 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkr 308 (510)
..++++++|+.+||+..||.+.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~ 35 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNI 35 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHH
Confidence 4689999999999999999754
No 411
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=29.29 E-value=2.4e+02 Score=23.22 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++++++|++.++++..|+.+..+.|.+.
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 78 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRK 78 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 57899999999999999999999988764
No 412
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=29.29 E-value=1.7e+02 Score=24.08 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++++.+|++.++++..||....+.|.+.
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 37899999999999999999999998875
No 413
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=29.29 E-value=67 Score=27.46 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.++++++|++.++++..||....+.|.+.
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 93 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 347899999999999999999999998875
No 414
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=29.26 E-value=67 Score=28.30 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.1
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 285 EDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 285 ~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
.|+ ..|+.+||+.+|||.+||=..|+
T Consensus 28 ~G~~~ts~~~IA~~aGvsk~tlY~~F~ 54 (211)
T 3bhq_A 28 KGYDGTSMEEIATKAGASKQTVYKHFT 54 (211)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred hCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 476 48999999999999999976664
No 415
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=29.25 E-value=55 Score=25.04 Aligned_cols=25 Identities=24% Similarity=0.358 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYK 310 (510)
...++++++|+.+||+..||.+..+
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3568999999999999999986543
No 416
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=29.24 E-value=59 Score=26.19 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=27.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Q 046187 193 RTLQEISIAANVPQKEIGKYIKILGEALQLS 223 (510)
Q Consensus 193 rTLkEIa~vt~VskkeIgr~yk~L~k~L~i~ 223 (510)
.+.+|||..++++...+...+..+.+.|+..
T Consensus 43 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 4789999999999999999988888888764
No 417
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=29.15 E-value=2.4e+02 Score=23.53 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
..++++++|++.++++..||....+.|.+.
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 347899999999999999999999998875
No 418
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=29.06 E-value=1.1e+02 Score=27.94 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=26.8
Q ss_pred CC-CCCHHHHHHHhCCCH-HHHHHHHHHHHHH
Q 046187 190 QE-PRTLQEISIAANVPQ-KEIGKYIKILGEA 219 (510)
Q Consensus 190 ~~-PrTLkEIa~vt~Vsk-keIgr~yk~L~k~ 219 (510)
.. +.|..|||+.+|++. ..+.|.+++|.+.
T Consensus 166 ~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 166 TLDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred EeccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 35 789999999999999 7999999999774
No 419
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=29.01 E-value=1.9e+02 Score=24.76 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++++.+||+.++++..||....+.|.+.
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~ 79 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRD 79 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 46899999999999999999999998654
No 420
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=28.98 E-value=65 Score=24.32 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhc
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQ 221 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~ 221 (510)
...|++|||..++++...+........+.|.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999998887776655555554
No 421
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=28.90 E-value=53 Score=28.82 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
|..||+-+-++ .|+ ..|+++||+.+|||.+||=..|+
T Consensus 19 Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~tlY~~F~ 56 (204)
T 2ibd_A 19 LLDIAATLFAE-RGLRATTVRDIADAAGILSGSLYHHFD 56 (204)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCchhcCHHHHHHHhCCCchhHHHhcC
Confidence 44444433333 376 58999999999999999965553
No 422
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=28.87 E-value=45 Score=30.00 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.|.|..|||+.+|++...+.|.++.|.+.
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999774
No 423
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=28.84 E-value=18 Score=31.00 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
|..|++-+..+ .|+ ..|+++||+.+|||.+||=..|+.
T Consensus 13 Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (195)
T 3pas_A 13 FLEATVREVAD-HGFSATSVGKIAKAAGLSPATLYIYYED 51 (195)
T ss_dssp HHHHHHHHHHH-HHHHHCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-cChHhcCHHHHHHHhCCCchHHHHHcCC
Confidence 44444433333 354 589999999999999999766653
No 424
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=28.83 E-value=69 Score=26.13 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHh-CCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVT-GLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~va-gVSe~TIRkrYKEL~e~ 315 (510)
..+.++.||++.+ |++..|+....+.|.+.
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 66 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGK 66 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHC
Confidence 4468999999999 59999999999998774
No 425
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=28.81 E-value=86 Score=27.28 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=27.7
Q ss_pred cCCCCCHHHHHHHh-CCCHHHHHHHHHHHHHh
Q 046187 285 EDKRKTQAEICKVT-GLTEVTLRKVYKELLEN 315 (510)
Q Consensus 285 ~g~~~t~keIa~va-gVSe~TIRkrYKEL~e~ 315 (510)
..-+.+..|+++.+ +||..++..++++|.+.
T Consensus 36 ~~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~ 67 (131)
T 4a5n_A 36 IDGKKRFNEFRRICPSITQRMLTLQLRELEAD 67 (131)
T ss_dssp TTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred hcCCcCHHHHHHHhcccCHHHHHHHHHHHHHC
Confidence 34578999999999 99999999999999875
No 426
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=28.72 E-value=54 Score=28.81 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
|..||+-+-++ .|+ ..|+.+||+.+|||.+||=..|+
T Consensus 15 Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~t~Y~~F~ 52 (210)
T 3vib_A 15 LMLAALETFYR-KGIARTSLNEIAQAAGVTRDALYWHFK 52 (210)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHHCcCHHHHHHHCC
Confidence 44444433332 475 58999999999999999976653
No 427
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=28.67 E-value=30 Score=30.46 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
|..|++-+..+ .|+ ..|+.+||+.+|||.+||=..|+.
T Consensus 22 Il~aA~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~s 60 (218)
T 3gzi_A 22 LILAARNLFIE-RPYAQVSIREIASLAGTDPGLIRYYFGS 60 (218)
T ss_dssp HHHHHHHHHHT-SCCSCCCHHHHHHHHTSCTHHHHHHHSS
T ss_pred HHHHHHHHHHH-CCCCcCCHHHHHHHhCCCHHHHHHHcCC
Confidence 44444433332 466 589999999999999999877753
No 428
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=28.64 E-value=1.3e+02 Score=25.03 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=27.4
Q ss_pred hcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 188 EAQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 188 ~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.++ +.++.||+..+++++..+.+.++.|.+.
T Consensus 51 ~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 51 SAS-DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 344 8999999999999999999999998775
No 429
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=28.64 E-value=58 Score=28.83 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.+.|.+|||+.+|++...+.|.+++|++.
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 190 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEE 190 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999875
No 430
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=28.63 E-value=62 Score=27.24 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
.-|..+.-||-.. ...++++.+||+.+|+|+.++.+.+++.
T Consensus 11 ~~i~~~~~~i~~~-~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 11 ITIHSILDWIEDN-LESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHHHTT-TTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444455443 3446899999999999999999888875
No 431
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=28.61 E-value=25 Score=31.97 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
-|..|++-+..+ .|+ ..|+++||+.+|||..||-..|+
T Consensus 48 ~Il~aA~~lf~e-~G~~~~t~~~IA~~aGvs~~tlY~~F~ 86 (236)
T 3q0w_A 48 AILATAENLLED-RPLADISVDDLAKGAGISRPTFYFYFP 86 (236)
T ss_dssp HHHHHHHHHHHH-SCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHhCCcHHHHHHHCC
Confidence 355555544443 476 79999999999999999976664
No 432
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=28.50 E-value=30 Score=30.04 Aligned_cols=47 Identities=19% Similarity=0.161 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~e~l~~L 319 (510)
.|..|++-+..+ .|+ ..|+++||+.+|||..||-..|+.-.+.+..+
T Consensus 11 ~Il~aA~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~ 58 (195)
T 2dg7_A 11 RLKRAALELYSE-HGYDNVTVTDIAERAGLTRRSYFRYFPDKREVLFGG 58 (195)
T ss_dssp HHHHHHHHHHHH-SCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGGGTTT
T ss_pred HHHHHHHHHHHh-cCccccCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 344444444433 465 58999999999999999987766544443333
No 433
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=28.45 E-value=67 Score=28.12 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=20.7
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHH
Q 046187 285 EDK-RKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 285 ~g~-~~t~keIa~vagVSe~TIRkrY 309 (510)
.|+ ..|+.+||+.+|||.+||=..|
T Consensus 28 ~Gy~~ts~~~IA~~agvs~gtlY~yF 53 (205)
T 1rkt_A 28 KGFELTTMKDVVEESGFSRGGVYLYF 53 (205)
T ss_dssp HCSTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred cCcccCCHHHHHHHHCCCcchhhhhC
Confidence 476 6899999999999999995433
No 434
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=28.38 E-value=60 Score=29.08 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.|.|..|||+.+|++...+.|.+++|++.
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999874
No 435
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=28.29 E-value=41 Score=24.88 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrY 309 (510)
..++++++|+.+||+..||.+..
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e 39 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWE 39 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 36799999999999999997643
No 436
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=28.29 E-value=61 Score=28.37 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
-|..||+-+-++ .|+ ..|+++||+.+|||.+||=..|+
T Consensus 11 ~Il~aA~~lf~~-~G~~~ts~~~IA~~aGvs~gtlY~~F~ 49 (197)
T 2gen_A 11 EILQAALACFSE-HGVDATTIEMIRDRSGASIGSLYHHFG 49 (197)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHCCCHHHHHHHTC
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHHCCChHHHHHHCC
Confidence 344444443333 476 68899999999999999976653
No 437
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=28.28 E-value=37 Score=24.91 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 291 QAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 291 ~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
..+||..+||+..||++..+...+.
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~~~~~ 52 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQCESNL 52 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999886654443
No 438
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=28.27 E-value=36 Score=29.26 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
.-|..|++-+..+ .|+ ..|+++||+.+|||..||=..|+.-
T Consensus 17 ~~Il~aA~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 58 (191)
T 4aci_A 17 QEILEGARRCFAE-HGYEGATVRRLEEATGKSRGAIFHHFGDK 58 (191)
T ss_dssp HHHHHHHHHHHHH-HHHHHCCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHH-hCcccCCHHHHHHHHCCCchHHHHHCCCH
Confidence 3444455544433 355 5899999999999999998777543
No 439
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=28.26 E-value=56 Score=28.56 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=21.6
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 285 EDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 285 ~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
.|+ ..|+.+||+.+|||.+||=..|+
T Consensus 25 ~G~~~~t~~~Ia~~Agvs~gt~Y~yF~ 51 (204)
T 3anp_C 25 RGFQETTATEIAKAAHVSRGTFFNYYP 51 (204)
T ss_dssp HCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred cCcccccHHHHHHHcCCchHHHHHHcC
Confidence 476 58999999999999999965553
No 440
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=28.20 E-value=74 Score=24.76 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=21.1
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHH
Q 046187 285 EDKRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 285 ~g~~~t~keIa~vagVSe~TIRkrY 309 (510)
....+++.++|+.+||+..||.+..
T Consensus 23 ~~~glsq~~lA~~~gis~~~is~~e 47 (91)
T 1x57_A 23 QSKGLTQKDLATKINEKPQVIADYE 47 (91)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3467899999999999999997654
No 441
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=28.10 E-value=44 Score=26.95 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYK 310 (510)
...+|+.++|+.+|||..||.+..+
T Consensus 35 ~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 35 DRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3578999999999999999986543
No 442
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.06 E-value=72 Score=25.12 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEALQL 222 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i 222 (510)
...|++|||..++++...+........+.|..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999998887777766666653
No 443
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=28.02 E-value=49 Score=32.84 Aligned_cols=29 Identities=10% Similarity=0.267 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLE 314 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e 314 (510)
+..++.+++|+.++||+.||++..+.|.+
T Consensus 17 ~~~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 17 GEFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44689999999999999999999999987
No 444
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=27.76 E-value=7.9 Score=34.18 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
...+.+|||+.+|+|+.||++++......+..
T Consensus 150 ~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 150 GDLTHRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998877776654
No 445
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=27.60 E-value=62 Score=29.31 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=27.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
..+.++||+.+++|+.||+...+.|++.++.
T Consensus 164 g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 164 GLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 3788999999999999999999999988864
No 446
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=27.58 E-value=46 Score=25.57 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYK 310 (510)
..+|++++|+.+||+..||.+..+
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 468999999999999999986544
No 447
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=27.52 E-value=46 Score=28.13 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++++++||+.++++..|+....+.|.+.
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 84 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKK 84 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 57999999999999999999999888764
No 448
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=27.50 E-value=21 Score=32.19 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
..++|+++||+.+|+|..|+.+..++|.+.
T Consensus 162 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 191 (213)
T 1o5l_A 162 TLPVTLEELSRLFGCARPALSRVFQELERE 191 (213)
T ss_dssp ------------------------------
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 357889999999999999999999998764
No 449
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=27.47 E-value=23 Score=28.28 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=13.8
Q ss_pred CCCCCCCCCCcccccCCCCccccccccceec
Q 046187 2 KCPYCSAAQGRCATTSTGRSITECGSCGRVI 32 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd~~~VC~~CG~Vl 32 (510)
.|-+|+...+-.--...|..-++|..||+-+
T Consensus 10 ~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~ 40 (71)
T 2kae_A 10 QCSNCSVTETIRWRNIRSKEGIQCNACFIYQ 40 (71)
T ss_dssp CCSSSCCSCCSSCCCCSSSSCCCSSHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCCccchHHHHHH
Confidence 4666666444332210011115666666644
No 450
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=27.44 E-value=1e+02 Score=25.29 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=28.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Q 046187 192 PRTLQEISIAANVPQKEIGKYIKILGEALQLS 223 (510)
Q Consensus 192 PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i~ 223 (510)
+.++.||+..+++++..+.+.++.|.+ .++-
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~Le~-~Glv 75 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVLRN-LGLV 75 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHHHH-HCSE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH-CCCE
Confidence 689999999999999999999999988 7753
No 451
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.44 E-value=66 Score=26.52 Aligned_cols=31 Identities=23% Similarity=0.067 Sum_probs=26.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Q 046187 193 RTLQEISIAANVPQKEIGKYIKILGEALQLS 223 (510)
Q Consensus 193 rTLkEIa~vt~VskkeIgr~yk~L~k~L~i~ 223 (510)
.+.+|||+.++++...+...+..+.+.|+..
T Consensus 50 ~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 50 FLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4789999999999999988888888887753
No 452
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=27.43 E-value=49 Score=33.39 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=27.5
Q ss_pred cCCCCCHHHHHHHh--CCCHHHHHHHHHHHHHh
Q 046187 285 EDKRKTQAEICKVT--GLTEVTLRKVYKELLEN 315 (510)
Q Consensus 285 ~g~~~t~keIa~va--gVSe~TIRkrYKEL~e~ 315 (510)
.+.+++.+++++.+ +||+.|||+-+.+|.+.
T Consensus 33 ~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~ 65 (338)
T 1stz_A 33 NKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYL 65 (338)
T ss_dssp HCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHT
T ss_pred cCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 36789999999999 99999999999988764
No 453
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=27.42 E-value=25 Score=31.67 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=16.7
Q ss_pred CCCCCCCCCCcccccCCCC--ccccccccce
Q 046187 2 KCPYCSAAQGRCATTSTGR--SITECGSCGR 30 (510)
Q Consensus 2 ~Cp~C~~~~~~i~D~~~Gd--~~~VC~~CG~ 30 (510)
.||.||..... . ...|+ ...+|..||.
T Consensus 5 ~C~~CG~~~~~-~-~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 5 FCSQCGGEVIL-R-IPEGDTLPRYICPKCHT 33 (189)
T ss_dssp BCTTTCCBCEE-E-CCTTCSSCEEEETTTTE
T ss_pred cCchhCCcccc-c-cccCCCCcceECCCCCC
Confidence 59999984322 2 12331 1369999994
No 454
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=27.42 E-value=20 Score=31.09 Aligned_cols=31 Identities=6% Similarity=0.019 Sum_probs=24.2
Q ss_pred CC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 046187 286 DK-RKTQAEICKVTGLTEVTLRKVYKELLENW 316 (510)
Q Consensus 286 g~-~~t~keIa~vagVSe~TIRkrYKEL~e~l 316 (510)
|+ ..|+++||+.+|||..||-..|+.-.+.+
T Consensus 37 G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~ 68 (203)
T 3mnl_A 37 GYEAVQMRAVADRADVAVGTLYRYFPSKVHLL 68 (203)
T ss_dssp HHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred CCccCCHHHHHHHcCCChhHHHHHcCCHHHHH
Confidence 54 58999999999999999987765443333
No 455
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=27.42 E-value=13 Score=36.13 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKE 311 (510)
.+.|++|||+.+|||..|+++++..
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3578999999999999999988854
No 456
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=27.33 E-value=46 Score=28.93 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 270 PISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 270 P~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
-.-|..|++-+...-.|+ ..|+++||+.+|||.+||-..|+
T Consensus 26 r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 67 (212)
T 3nxc_A 26 REEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFP 67 (212)
T ss_dssp HHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCC
Confidence 344555544422222464 69999999999999999965553
No 457
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=27.31 E-value=1.9e+02 Score=24.84 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=27.1
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 285 EDKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 285 ~g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+...++++||+.++++..|+....+.|.+.
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~ 73 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQLEEK 73 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 4567889999999999999999999888763
No 458
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=27.30 E-value=40 Score=30.36 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELL 313 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~ 313 (510)
|..|++-+..+ .|+ ..|+++||+.+||+..||-..|+.-.
T Consensus 45 Il~aA~~lf~~-~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK~ 85 (225)
T 2id3_A 45 VLLAAGDALAA-DGFDALDLGEIARRAGVGKTTVYRRWGTPG 85 (225)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 33444433333 465 59999999999999999988775433
No 459
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=27.22 E-value=27 Score=30.50 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 270 PISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 270 P~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
-.-|..|++-+..+ .|+ ..|+++||+.+|||.+||=..|+.
T Consensus 11 r~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~s 52 (193)
T 2dg8_A 11 RERILAATLDLIAE-EGIARVSHRRIAQRAGVPLGSMTYHFTG 52 (193)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCTHHHHHHCSS
T ss_pred HHHHHHHHHHHHHH-hChhhccHHHHHHHhCCCchhhheeCCC
Confidence 34555555555544 465 689999999999999999766643
No 460
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=27.13 E-value=71 Score=23.35 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=23.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhc
Q 046187 193 RTLQEISIAANVPQKEIGKYIKILGEALQ 221 (510)
Q Consensus 193 rTLkEIa~vt~VskkeIgr~yk~L~k~L~ 221 (510)
.+.+|||..++++...+.+.+....+.|.
T Consensus 32 ~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 32 LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 68999999999999887777666666554
No 461
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=27.10 E-value=95 Score=26.92 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.+++++|++.++++..||....+.|.+.
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 7899999999999999999999998774
No 462
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=27.08 E-value=48 Score=27.78 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
...++++||+.++++..|+....+.|.+.
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 80 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQE 80 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999888764
No 463
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=27.05 E-value=84 Score=25.61 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 176 ALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKI 215 (510)
Q Consensus 176 aVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~ 215 (510)
.+..++-||. .....+.++.|||+.++++...|.+.|+.
T Consensus 8 ~i~~~~~~i~-~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 8 KLTEAVSLME-ANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHHH-TCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3445555554 23355799999999999999998877663
No 464
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=27.04 E-value=64 Score=28.92 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
+.++++++||+.++++..||....+.|.+.
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 84 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKN 84 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 457999999999999999999999888763
No 465
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=26.94 E-value=43 Score=30.01 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYK 310 (510)
-|..|++-+.++ .|+ ..|+++||+.+|||.+||-..|+
T Consensus 39 ~Il~aA~~lf~~-~G~~~~t~~~IA~~AGvs~~tlY~~F~ 77 (221)
T 3g7r_A 39 RLLGTATRIFYA-EGIHSVGIDRITAEAQVTRATLYRHFS 77 (221)
T ss_dssp HHHHHHHHHHHH-HCSTTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 344444444443 475 58999999999999999976654
No 466
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=26.79 E-value=33 Score=30.71 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
-|..|++-+-.+ .|+ ..|+++||+.+|||.+||-..|+.
T Consensus 9 ~Il~aA~~lf~~-~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 48 (228)
T 3nnr_A 9 KILLSSLELFND-KGERNITTNHIAAHLAISPGNLYYHFRN 48 (228)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-hChhhcCHHHHHHHhCCCCccchhcCCC
Confidence 455555544443 476 589999999999999999766643
No 467
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=26.74 E-value=5.1 Score=34.63 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=25.0
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 286 DKRK-TQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~-t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
|.++ +.+++|+.+|||..|||++|+.|...
T Consensus 32 G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~ 62 (126)
T 3ic7_A 32 EGRIPSVREYASIVEVNANTVMRSYEYLQSQ 62 (126)
T ss_dssp TSEECCTTTTTTCC-CCSGGGHHHHHHHHTT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4556 68899999999999999999999864
No 468
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=26.72 E-value=32 Score=26.19 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 046187 286 DKRKTQAEICKVTGLTEVTLRKV 308 (510)
Q Consensus 286 g~~~t~keIa~vagVSe~TIRkr 308 (510)
...+|++++|+.+|||..||.+.
T Consensus 22 ~~gltq~elA~~~gvs~~tis~~ 44 (73)
T 3fmy_A 22 KLSLTQKEASEIFGGGVNAFSRY 44 (73)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHH
Confidence 35789999999999999999864
No 469
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=26.66 E-value=62 Score=28.29 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHH
Q 046187 272 SISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 272 sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrY 309 (510)
-|..||+-+-++ .|+ ..|+.+||+.+|||.+||=..|
T Consensus 14 ~Il~aA~~lf~~-~G~~~~s~~~Ia~~Agvskgt~Y~yF 51 (197)
T 2f07_A 14 KILQAAIEVISE-KGLDKASISDIVKKAGTAQGTFYLYF 51 (197)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHH-hCcccCCHHHHHHHhCCCchHHHHhC
Confidence 344444444333 475 5899999999999999996554
No 470
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=26.63 E-value=76 Score=28.04 Aligned_cols=38 Identities=21% Similarity=0.045 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHH
Q 046187 271 ISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 271 ~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrY 309 (510)
.-|..||+-+-++ .|+ ..|+++||+.+|||.+||=..|
T Consensus 14 ~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvskgtlY~~F 52 (219)
T 2w53_A 14 EGILDAAEACFHE-HGVARTTLEMIGARAGYTRGAVYWHF 52 (219)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCchHHhhcC
Confidence 4455555544433 476 5899999999999999995443
No 471
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=26.60 E-value=54 Score=24.91 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKV 308 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkr 308 (510)
..+|++++|+.+||+..||.+.
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~ 44 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGI 44 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHH
Confidence 4567778888888887777654
No 472
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=32.53 E-value=14 Score=29.51 Aligned_cols=41 Identities=5% Similarity=0.152 Sum_probs=34.6
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHhc
Q 046187 181 ALVQAIREAQE-PRTLQEISIAANVPQKEIGKYIKILGEALQ 221 (510)
Q Consensus 181 CLYIACR~~~~-PrTLkEIa~vt~VskkeIgr~yk~L~k~L~ 221 (510)
-|..+|++.|. +.||.-||..++-+..+|...|+.|.+.+.
T Consensus 24 ~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 24 VILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMKLFE 65 (70)
Confidence 37788998877 899999999888888899999988877664
No 473
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=26.52 E-value=55 Score=27.38 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=26.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
..++.+|++.++++..||...++.|.+.
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 7899999999999999999999999886
No 474
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=26.52 E-value=70 Score=27.49 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHh-CCCHHHHHHHHHHHHHh
Q 046187 286 DKRKTQAEICKVT-GLTEVTLRKVYKELLEN 315 (510)
Q Consensus 286 g~~~t~keIa~va-gVSe~TIRkrYKEL~e~ 315 (510)
.-+.++.||++.+ |++..|+....+.|.+.
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~ 76 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQD 76 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 3478999999999 79999999999999874
No 475
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=26.45 E-value=77 Score=27.76 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrY 309 (510)
|..||+-+-++ .|+ ..|+.+||+.+|||..||=..|
T Consensus 14 Il~aA~~lf~~-~G~~~~s~~~IA~~aGvsk~tlY~~F 50 (203)
T 3cdl_A 14 IVQAAIAEFGD-RGFEITSMDRIAARAEVSKRTVYNHF 50 (203)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHTTS
T ss_pred HHHHHHHHHHH-cCchhcCHHHHHHHhCCCHHHHHHHC
Confidence 44444433332 476 5899999999999999996544
No 476
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=26.44 E-value=22 Score=31.70 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=22.4
Q ss_pred CC-CCCHHHHHHHhCCCHHHHHHHHHHH
Q 046187 286 DK-RKTQAEICKVTGLTEVTLRKVYKEL 312 (510)
Q Consensus 286 g~-~~t~keIa~vagVSe~TIRkrYKEL 312 (510)
|+ ..|+++||+.+||+.+|+=..|+.-
T Consensus 37 g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K 64 (185)
T 3o60_A 37 TFESISIKDLCEQARVSRATFYRHHKEI 64 (185)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHCSST
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 54 6899999999999999997766533
No 477
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.35 E-value=29 Score=34.94 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCccc---cc------CCCCccccccccceec
Q 046187 1 MKCPYCSAAQGRCA---TT------STGRSITECGSCGRVI 32 (510)
Q Consensus 1 m~Cp~C~~~~~~i~---D~------~~Gd~~~VC~~CG~Vl 32 (510)
++||+|+.....-+ |. ..+....+|..||.-+
T Consensus 223 ~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 223 IKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp TSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred cCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 47999999543221 21 1333458999999877
No 478
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=26.23 E-value=49 Score=25.17 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrY 309 (510)
..+|++++|+.+||+..||.+.-
T Consensus 26 ~gltq~elA~~~gis~~~is~~e 48 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTE 48 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 46899999999999999998643
No 479
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=26.15 E-value=84 Score=26.57 Aligned_cols=29 Identities=3% Similarity=0.165 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++++++|++.++++..||....+.|.+.
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999988875
No 480
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=26.11 E-value=56 Score=24.68 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrY 309 (510)
..++++++|+.+||+..||.+..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e 44 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIE 44 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 46889999999999999987543
No 481
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=26.11 E-value=69 Score=25.36 Aligned_cols=28 Identities=11% Similarity=0.206 Sum_probs=19.6
Q ss_pred CCHHHHHHHhCCCHHHHHH----HHHHHHHHh
Q 046187 193 RTLQEISIAANVPQKEIGK----YIKILGEAL 220 (510)
Q Consensus 193 rTLkEIa~vt~VskkeIgr----~yk~L~k~L 220 (510)
.+++|||..++++...+.. +.++|++.|
T Consensus 54 ~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 54 WSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999866544 444455444
No 482
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=26.11 E-value=29 Score=29.88 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=25.8
Q ss_pred CC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 286 DK-RKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 286 g~-~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
|+ ..|+++||+.+|||.+||-..|+.-.+.+..
T Consensus 24 G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~ 57 (186)
T 2jj7_A 24 GYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYE 57 (186)
T ss_dssp HHHHCCHHHHHHHHTSCHHHHHHHHSSHHHHHHH
T ss_pred CCccCCHHHHHHHhCCChhhhhhhcCCHHHHHHH
Confidence 54 5899999999999999999888654444433
No 483
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=26.03 E-value=84 Score=26.07 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
.++++.+|++.++++..||....+.|.+.
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 37899999999999999999999998875
No 484
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=25.98 E-value=65 Score=29.79 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
|..|++-+..+ .|+ ..|+++||+.+|||..||-..|+.-.+.+..
T Consensus 53 Il~AA~~lf~e-~G~~~~Ti~~IA~~AGvs~~t~Y~yF~sKe~Ll~a 98 (260)
T 2of7_A 53 IRAATYGLIRQ-QGYEATTVEQIAERAEVSPSTVLRYFPTREDIVLT 98 (260)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHTS
T ss_pred HHHHHHHHHHH-hCcccccHHHHHHHhCCChHHHHHHcCCHHHHHHh
Confidence 44444444433 365 5899999999999999998777654444433
No 485
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=25.92 E-value=92 Score=27.36 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=27.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLENWDD 318 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~l~~ 318 (510)
..+.++|++.+++|+.||+...+.+++.++.
T Consensus 157 g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~ 187 (208)
T 1yio_A 157 GLMNKQIAGELGIAEVTVKVHRHNIMQKLNV 187 (208)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 4688999999999999999988888888764
No 486
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=25.89 E-value=35 Score=30.04 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKE 311 (510)
Q Consensus 273 IAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKE 311 (510)
|..|++-+..+ .|+ ..|+++||+.+|||..||=..|+.
T Consensus 8 Il~aA~~lf~~-~G~~~~s~~~IA~~Agvs~~t~Y~~F~s 46 (212)
T 3rh2_A 8 IIQASLELFNE-HGERTITTNHIAAHLDISPGNLYYHFRN 46 (212)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 44444444333 476 489999999999999999766643
No 487
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=25.89 E-value=85 Score=26.62 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIK 214 (510)
Q Consensus 172 Rs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk 214 (510)
..++.+..|++-+-.+.-=...|+++|+..+||++..|-+.|.
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 51 (195)
T 3ppb_A 9 TKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFP 51 (195)
T ss_dssp CHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 4456777777777766433568999999999998766665543
No 488
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=25.79 E-value=1e+02 Score=25.03 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 189 AQEPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 189 ~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
.|.+.+..||++.++++...+.+.++.|...
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5656899999999999999999999998764
No 489
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=25.78 E-value=1.5e+02 Score=22.96 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCCcchhhhHHHHHhhcCCCHHHHHHHHHHHH
Q 046187 193 RTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLATHIGE 257 (510)
Q Consensus 193 rTLkEIa~vt~VskkeIgr~yk~L~k~L~i~~pv~~~~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~ 257 (510)
.|..|++..++++...|.+. ..-.... ..+.+.++|..|+++..+......+..
T Consensus 28 ltq~elA~~~gis~~~is~~---------E~G~~~p--~~~~l~~ia~~l~v~~~~~~l~~~~~~ 81 (86)
T 3eus_A 28 LTQADLAERLDKPQSFVAKV---------ETRERRL--DVIEFAKWMAACEGLDVVSEIVATIAE 81 (86)
T ss_dssp CCHHHHHHHTTCCHHHHHHH---------HTTSSCC--BHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHHH---------HCCCCCC--CHHHHHHHHHHcCCCcHHHHHHHHHHh
No 490
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=25.77 E-value=68 Score=26.44 Aligned_cols=28 Identities=7% Similarity=0.122 Sum_probs=25.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 046187 288 RKTQAEICKVTGLTEVTLRKVYKELLEN 315 (510)
Q Consensus 288 ~~t~keIa~vagVSe~TIRkrYKEL~e~ 315 (510)
++++++|++.++++..||....+.|.+.
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le~~ 77 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLERD 77 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 6899999999999999999999998874
No 491
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=25.77 E-value=57 Score=25.62 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 287 KRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 287 ~~~t~keIa~vagVSe~TIRkrYK 310 (510)
..+++.++|+.+||+..||.+..+
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 467899999999999999986543
No 492
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=25.71 E-value=83 Score=27.22 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 172 RSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIK 214 (510)
Q Consensus 172 Rs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk 214 (510)
..++.|..|++=+..+.-=...|+++|+..+||++..|-+.|.
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 46 (185)
T 2yve_A 4 SKKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFP 46 (185)
T ss_dssp CHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHHhCc
Confidence 3456677776666655444468999999999998877766644
No 493
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=25.69 E-value=72 Score=23.26 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHhC--CCHHHHHHHH
Q 046187 286 DKRKTQAEICKVTG--LTEVTLRKVY 309 (510)
Q Consensus 286 g~~~t~keIa~vag--VSe~TIRkrY 309 (510)
...+|++++|+.+| |+..||.+.-
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e 44 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYE 44 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHH
Confidence 35689999999999 9999997643
No 494
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=25.56 E-value=40 Score=29.37 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046187 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYK 310 (510)
Q Consensus 273 IAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYK 310 (510)
|..|++-+-.+ .|+..|+++||+.+|||.+||=..|+
T Consensus 21 Il~aA~~lf~~-~G~~~s~~~Ia~~agvs~~t~Y~~F~ 57 (199)
T 2rek_A 21 IIEAAAAEVAR-HGADASLEEIARRAGVGSATLHRHFP 57 (199)
T ss_dssp HHHHHHHHHHH-HGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHhCCchHHHHHHCC
Confidence 33344433332 35578999999999999999976664
No 495
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=25.55 E-value=1e+02 Score=24.01 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046187 191 EPRTLQEISIAANVPQKEIGKYIKILGEA 219 (510)
Q Consensus 191 ~PrTLkEIa~vt~VskkeIgr~yk~L~k~ 219 (510)
-+.++.||++.+++++..+.+.++.|.+.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999888663
No 496
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=25.53 E-value=60 Score=25.71 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=27.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Q 046187 192 PRTLQEISIAANVPQKEIGKYIKILGEALQLS 223 (510)
Q Consensus 192 PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i~ 223 (510)
..+.+|||..++++...+...+..+.+.|+..
T Consensus 44 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 44 GYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp TCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 35788999999999999998888888888753
No 497
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=25.46 E-value=42 Score=30.48 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q 046187 270 PISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKVYKELLENWD 317 (510)
Q Consensus 270 P~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkrYKEL~e~l~ 317 (510)
..-|..|++-+..+ .|+ ..|+++||+.+||+..||=..|+.-.+.+.
T Consensus 4 r~~Il~aA~~l~~~-~G~~~~s~~~IA~~aGvs~~tlY~hf~~K~~Ll~ 51 (209)
T 3bqy_A 4 RARTVQTALDLLNE-SGLDTLTMRRLAQAMDVQAGALYRYFAAKQDLLT 51 (209)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCcccCCHHHHHHHhCCCcchHHhhcCCHHHHHH
Confidence 44566666666654 465 589999999999999999877754333333
No 498
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=25.35 E-value=38 Score=29.01 Aligned_cols=38 Identities=11% Similarity=0.050 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHH
Q 046187 270 PISISAAAIYLACQLEDK-RKTQAEICKVTGLTEVTLRKV 308 (510)
Q Consensus 270 P~sIAAAaIYlAarl~g~-~~t~keIa~vagVSe~TIRkr 308 (510)
-.-|..|++-+..+ .|+ ..|+++||+.+|||.+||=..
T Consensus 14 r~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~t~Y~~ 52 (199)
T 3on2_A 14 RRVLLARAESTLEK-DGVDGLSLRQLAREAGVSHAAPSKH 52 (199)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHHTC-----CCCS
T ss_pred HHHHHHHHHHHHHh-cChhhhhHHHHHHHhCCChHHHHHH
Confidence 34566666655554 476 589999999999999998433
No 499
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=25.31 E-value=34 Score=28.12 Aligned_cols=20 Identities=5% Similarity=0.177 Sum_probs=18.0
Q ss_pred CCHHHHHHHhCCCHHHHHHH
Q 046187 289 KTQAEICKVTGLTEVTLRKV 308 (510)
Q Consensus 289 ~t~keIa~vagVSe~TIRkr 308 (510)
.+|+.||+..||+++||.+.
T Consensus 25 ~gQ~~vAe~~GvdeStISR~ 44 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRW 44 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHH
T ss_pred HhhHHHHHHhCCCHHHHhhh
Confidence 47999999999999999874
No 500
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=25.06 E-value=42 Score=28.85 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHH
Q 046187 273 ISAAAIYLACQLEDKRKTQAEICKVTGLTEVTL 305 (510)
Q Consensus 273 IAAAaIYlAarl~g~~~t~keIa~vagVSe~TI 305 (510)
|..|++-+..+.-=...|+++||+.+|||.+||
T Consensus 8 Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~ 40 (189)
T 3geu_A 8 IIDNAITLFSEKGYDGTTLDDIAKSVNIKKASL 40 (189)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHH
Done!