BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046189
         (139 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C37|A Chain A, X-ray Structure Of The Putative Zn-dependent Peptidase
           Q74d82 At The Resolution 1.7 A. Northeast Structural
           Genomics Consortium Target Gsr143a
 pdb|3C37|B Chain B, X-ray Structure Of The Putative Zn-dependent Peptidase
           Q74d82 At The Resolution 1.7 A. Northeast Structural
           Genomics Consortium Target Gsr143a
          Length = 253

 Score = 27.3 bits (59), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 49  SPNSKPVPEGHVPVYVG------DEMERFVVSAELLNHPVFVGLLNKSAQEYGY 96
           S N+  +P G V V+ G      +E E   V A  +NH V      +  QEYGY
Sbjct: 73  SVNAFAIPGGRVYVHTGLLKAADNETELAGVLAHEINHAVARHGTRQXTQEYGY 126


>pdb|2ZKT|A Chain A, Structure Of Ph0037 Protein From Pyrococcus Horikoshii
 pdb|2ZKT|B Chain B, Structure Of Ph0037 Protein From Pyrococcus Horikoshii
          Length = 412

 Score = 25.4 bits (54), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 55  VPEGHVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERV 114
            PEG    Y  +EM +   + ELL    FV L  K     G++ K  L+      + ER 
Sbjct: 268 TPEGATGEYNTNEMAKAKKAVELLKDYDFVFLHFKPTDAAGHDNKPKLK----AELIERA 323

Query: 115 VESLRLGLESRDLQDLLSSVSDEY 138
              +   L+  DL++++ +++ ++
Sbjct: 324 DRMIGYILDHVDLEEVVIAITGDH 347


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,092,275
Number of Sequences: 62578
Number of extensions: 98612
Number of successful extensions: 276
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 4
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)