Query 046189
Match_columns 139
No_of_seqs 156 out of 654
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 16:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 75.3 12 0.0004 25.7 6.8 63 57-122 5-72 (107)
2 2nz0_B Potassium voltage-gated 65.7 8.1 0.00028 28.4 4.4 63 56-122 33-97 (140)
3 1s1g_A Potassium voltage-gated 65.3 5.5 0.00019 28.6 3.4 63 56-122 11-75 (124)
4 2vkp_A BTB/POZ domain-containi 55.3 26 0.00088 22.7 5.1 59 60-122 11-74 (109)
5 2vpk_A Myoneurin; transcriptio 53.6 38 0.0013 22.3 5.9 63 60-131 25-95 (116)
6 1r29_A B-cell lymphoma 6 prote 52.3 43 0.0015 22.4 6.1 57 60-122 32-92 (127)
7 3drx_A BTB/POZ domain-containi 45.5 28 0.00096 27.2 4.7 64 56-122 10-78 (202)
8 1und_A Advillin, P92; actin bi 42.5 11 0.00037 22.2 1.4 19 76-94 1-19 (37)
9 3ga1_A Nucleus accumbens-assoc 34.4 88 0.003 21.0 5.4 63 60-131 36-105 (129)
10 1y6i_A Mg-chelatase cofactor G 32.2 4.1 0.00014 32.9 -2.2 30 53-84 200-229 (233)
11 3kvt_A Potassium channel prote 30.6 17 0.00059 25.5 1.1 60 58-122 5-68 (115)
12 3b84_A Zinc finger and BTB dom 30.1 1.2E+02 0.0041 20.0 5.9 63 60-131 27-95 (119)
13 1vd2_A Protein kinase C, IOTA 29.2 51 0.0017 22.5 3.3 42 59-104 6-49 (89)
14 2xko_C PIPX, global nitrogen r 29.0 5.9 0.0002 27.8 -1.5 14 76-89 5-18 (89)
15 2if5_A Zinc finger and BTB dom 28.7 1.2E+02 0.0043 19.8 6.6 67 60-131 28-100 (120)
16 1nn7_A Potassium channel KV4.2 28.0 33 0.0011 23.5 2.2 59 60-122 2-62 (105)
17 3htm_A Speckle-type POZ protei 25.3 1.3E+02 0.0043 20.8 5.0 58 60-122 37-97 (172)
18 1buo_A POZ domain, protein (pr 24.2 1.6E+02 0.0054 19.4 6.2 62 60-131 31-98 (121)
19 2q81_A MIZ-1 protein; BTB/POZ 23.6 1.2E+02 0.0042 20.0 4.5 62 60-131 30-97 (119)
20 1z3x_A Putative cytidyltransfe 23.2 5.1 0.00017 32.5 -3.2 29 53-83 208-236 (238)
21 1yu8_X Villin; alpha helix, 3- 21.2 37 0.0012 22.3 1.3 21 75-95 30-50 (67)
22 2ns5_A Partitioning-defective 20.6 79 0.0027 21.6 2.9 33 59-94 4-36 (85)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=75.35 E-value=12 Score=25.71 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=46.1
Q ss_pred CCeeEEEEcCCceEEEEecCCcC-cH--HHHHHHhhhhhhcC--cccCCeEEecCcHHHHHHHHHHHHcCC
Q 046189 57 EGHVPVYVGDEMERFVVSAELLN-HP--VFVGLLNKSAQEYG--YEQKGVLRIPCHVVVFERVVESLRLGL 122 (139)
Q Consensus 57 kG~~~VyVG~e~~RfvVp~~yLn-hP--~F~~LL~~aeeEfG--~~~~G~L~IPC~~~~Fe~vl~~l~~~~ 122 (139)
...+.+-||. ++|.+..+-|. +| .|..|...- .++. .+.+|.+-|..+...|++||..++.+.
T Consensus 5 ~~~v~LNVGG--~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 5 SKWVRLNVGG--TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CCEEEEEETT--EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CCEEEEEECC--EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 3478889995 69999866554 44 566665432 2332 335789999999999999999999884
No 2
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=65.73 E-value=8.1 Score=28.37 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=45.0
Q ss_pred CCCeeEEEEcCCceEEEEecCCc-CcHHHHHHHhhhhhhcCcc-cCCeEEecCcHHHHHHHHHHHHcCC
Q 046189 56 PEGHVPVYVGDEMERFVVSAELL-NHPVFVGLLNKSAQEYGYE-QKGVLRIPCHVVVFERVVESLRLGL 122 (139)
Q Consensus 56 pkG~~~VyVG~e~~RfvVp~~yL-nhP~F~~LL~~aeeEfG~~-~~G~L~IPC~~~~Fe~vl~~l~~~~ 122 (139)
....+.+-||. .||.+..+-| ++|. .+|..+....-++ .+|.+-|..+...|++||..++.|.
T Consensus 33 ~~~~V~LNVGG--~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~ 97 (140)
T 2nz0_B 33 QDELIVLNVSG--RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 97 (140)
T ss_dssp CCCEEEEEETT--EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSS
T ss_pred CCCEEEEEECC--EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCC
Confidence 45678889996 6899885544 3332 2344444333343 5799999999999999999999984
No 3
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=65.34 E-value=5.5 Score=28.60 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=44.7
Q ss_pred CCCeeEEEEcCCceEEEEecCCc-CcHHHHHHHhhhhhhcCcc-cCCeEEecCcHHHHHHHHHHHHcCC
Q 046189 56 PEGHVPVYVGDEMERFVVSAELL-NHPVFVGLLNKSAQEYGYE-QKGVLRIPCHVVVFERVVESLRLGL 122 (139)
Q Consensus 56 pkG~~~VyVG~e~~RfvVp~~yL-nhP~F~~LL~~aeeEfG~~-~~G~L~IPC~~~~Fe~vl~~l~~~~ 122 (139)
....+.+-||. .||.+..+-| ++|. .+|..++...-++ .+|.+-|..+...|++||..++.|.
T Consensus 11 ~~~~V~LNVGG--~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~ 75 (124)
T 1s1g_A 11 QDELIVLNVSG--RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 75 (124)
T ss_dssp -CCEEEEEETT--EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEeCC--EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCC
Confidence 45678889996 6899986554 3332 2344444333343 5799999999999999999999984
No 4
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=55.26 E-value=26 Score=22.74 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=42.3
Q ss_pred eEEEEcC--CceEEEEecCCc--CcHHHHHHHhhhhhhcCcccCCeEEec-CcHHHHHHHHHHHHcCC
Q 046189 60 VPVYVGD--EMERFVVSAELL--NHPVFVGLLNKSAQEYGYEQKGVLRIP-CHVVVFERVVESLRLGL 122 (139)
Q Consensus 60 ~~VyVG~--e~~RfvVp~~yL--nhP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~l~~~~ 122 (139)
+.+.||+ +.++|-+.-..| ..|.|+.++...-.| .. ..+.|| .+...|+.+|..+=.+.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e---~~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAE---VK-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCccc---CC-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 4566775 347888887777 589999999754333 22 678997 69999999999888774
No 5
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=53.62 E-value=38 Score=22.32 Aligned_cols=63 Identities=13% Similarity=0.266 Sum_probs=45.6
Q ss_pred eEEEEcCCceEEEEecCCc--CcHHHHHHHhhhhhhcCcccCCeEEec---CcHHHHHHHHHHHHcCCC---hHHHHHHH
Q 046189 60 VPVYVGDEMERFVVSAELL--NHPVFVGLLNKSAQEYGYEQKGVLRIP---CHVVVFERVVESLRLGLE---SRDLQDLL 131 (139)
Q Consensus 60 ~~VyVG~e~~RfvVp~~yL--nhP~F~~LL~~aeeEfG~~~~G~L~IP---C~~~~Fe~vl~~l~~~~~---~~~~~~L~ 131 (139)
+.+.||+ ++|-+.-..| ..|.|+.++... .++.+.|+ .+...|+.++..+=.+.- .+++.+|+
T Consensus 25 v~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~~v~~ll 95 (116)
T 2vpk_A 25 CTIVIGE--FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIH 95 (116)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTTTHHHHH
T ss_pred EEEEECC--EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 4567775 5788877776 579999998764 35678887 799999999998887743 24444444
No 6
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=52.28 E-value=43 Score=22.42 Aligned_cols=57 Identities=16% Similarity=0.291 Sum_probs=44.2
Q ss_pred eEEEEcCCceEEEEecCCc--CcHHHHHHHhhhhhhcCcccCCeEEe-c-CcHHHHHHHHHHHHcCC
Q 046189 60 VPVYVGDEMERFVVSAELL--NHPVFVGLLNKSAQEYGYEQKGVLRI-P-CHVVVFERVVESLRLGL 122 (139)
Q Consensus 60 ~~VyVG~e~~RfvVp~~yL--nhP~F~~LL~~aeeEfG~~~~G~L~I-P-C~~~~Fe~vl~~l~~~~ 122 (139)
+.+.||+ +.|-+.-..| ..|.|+.++...-.| ....+.| + .+...|+.+|..+=.+.
T Consensus 32 v~l~v~~--~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 32 VVIVVSR--EQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred EEEEECC--EEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 5667775 5787777777 689999999865444 4678999 4 78999999999987764
No 7
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=45.53 E-value=28 Score=27.25 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=46.1
Q ss_pred CCCeeEEEEcCCceEEEEecCCcC-cH--HHHHHHhhhhhhcC--cccCCeEEecCcHHHHHHHHHHHHcCC
Q 046189 56 PEGHVPVYVGDEMERFVVSAELLN-HP--VFVGLLNKSAQEYG--YEQKGVLRIPCHVVVFERVVESLRLGL 122 (139)
Q Consensus 56 pkG~~~VyVG~e~~RfvVp~~yLn-hP--~F~~LL~~aeeEfG--~~~~G~L~IPC~~~~Fe~vl~~l~~~~ 122 (139)
+...+.+-||. .||.+..+-|. +| .|..|...- .++. .+.+|.+-|..+...|++||..++.+.
T Consensus 10 ~~~~V~LNVGG--~~F~Tt~sTL~r~PdS~L~~lfs~~-~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~ 78 (202)
T 3drx_A 10 VSKWVRLNVGG--TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 78 (202)
T ss_dssp CCCEEEEEETT--EEEEEETTGGGSCTTSSTHHHHSCC-CC----BCTTCCEEECSCSTTHHHHHHHHHHSC
T ss_pred CCCEEEEEECC--EEEEEeHHHHhCCCcchHHHHhcCc-cccCcccCCCccEEecCChHHHHHHHHHhcCCc
Confidence 44578899995 69999976664 45 455554321 1232 345799999999999999999999884
No 8
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=42.55 E-value=11 Score=22.22 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=17.0
Q ss_pred CCcCcHHHHHHHhhhhhhc
Q 046189 76 ELLNHPVFVGLLNKSAQEY 94 (139)
Q Consensus 76 ~yLnhP~F~~LL~~aeeEf 94 (139)
.||+.-.|+.++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999987
No 9
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=34.41 E-value=88 Score=21.01 Aligned_cols=63 Identities=24% Similarity=0.363 Sum_probs=45.6
Q ss_pred eEEEEcCCceEEEEecCCcC--cHHHHHHHhhhhhhcCcccCCeEEec--CcHHHHHHHHHHHHcCC---ChHHHHHHH
Q 046189 60 VPVYVGDEMERFVVSAELLN--HPVFVGLLNKSAQEYGYEQKGVLRIP--CHVVVFERVVESLRLGL---ESRDLQDLL 131 (139)
Q Consensus 60 ~~VyVG~e~~RfvVp~~yLn--hP~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~l~~~~---~~~~~~~L~ 131 (139)
+.+.||+ ++|-+.-..|. .|.|++++... ....+.|| .+...|+.+|..+=.+. +.+++.+|+
T Consensus 36 v~l~v~~--~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~~~~ll 105 (129)
T 3ga1_A 36 VSVVVKG--HAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLM 105 (129)
T ss_dssp EEEEETT--EEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTTHHHHH
T ss_pred eEEEECC--EEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHHHHHHH
Confidence 5667774 57777755554 68999988765 45789996 89999999999887663 234555544
No 10
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=32.17 E-value=4.1 Score=32.93 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=19.9
Q ss_pred CCCCCCeeEEEEcCCceEEEEecCCcCcHHHH
Q 046189 53 KPVPEGHVPVYVGDEMERFVVSAELLNHPVFV 84 (139)
Q Consensus 53 ~~vpkG~~~VyVG~e~~RfvVp~~yLnhP~F~ 84 (139)
...|+||+|+.-.--.-| +=..+|+||.|.
T Consensus 200 l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred CCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 358999999864211111 556789999884
No 11
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=30.57 E-value=17 Score=25.54 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=40.9
Q ss_pred CeeEEEEcCCceEEEEecCCcC-cHH--HHHHHhhhhhhcCcc-cCCeEEecCcHHHHHHHHHHHHcCC
Q 046189 58 GHVPVYVGDEMERFVVSAELLN-HPV--FVGLLNKSAQEYGYE-QKGVLRIPCHVVVFERVVESLRLGL 122 (139)
Q Consensus 58 G~~~VyVG~e~~RfvVp~~yLn-hP~--F~~LL~~aeeEfG~~-~~G~L~IPC~~~~Fe~vl~~l~~~~ 122 (139)
..|.+-||. .||....+-|. +|. +..|.. .-..++ ..|..-|.-+...|++||..++.|.
T Consensus 5 ~~V~LNVGG--~~f~T~~~TL~~~P~s~L~~l~~---~~~~~~~~~g~~FiDRdp~~F~~ILnylR~G~ 68 (115)
T 3kvt_A 5 NRVIINVGG--IRHETYKATLKKIPATRLSRLTE---GMLNYDPVLNEYFFDRHPGVFAQIINYYRSGK 68 (115)
T ss_dssp CEEEEEETT--EEEEEEHHHHTTSCSSTTTTCCT---TSTTEETTTTEEEECSCTTTHHHHHHHHHHSC
T ss_pred CEEEEEECC--EEEEecHHHHhcCCCccHHHHhc---CCCCCCCCCCcEEEecChHHHHHHHHHhcCCC
Confidence 467888995 68998854443 331 222221 112343 5799999999999999999999873
No 12
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=30.06 E-value=1.2e+02 Score=20.03 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=44.6
Q ss_pred eEEEEcCCceEEEEecCCc--CcHHHHHHHhhhhhhcCcccCCeEEec-CcHHHHHHHHHHHHcCCC---hHHHHHHH
Q 046189 60 VPVYVGDEMERFVVSAELL--NHPVFVGLLNKSAQEYGYEQKGVLRIP-CHVVVFERVVESLRLGLE---SRDLQDLL 131 (139)
Q Consensus 60 ~~VyVG~e~~RfvVp~~yL--nhP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~l~~~~~---~~~~~~L~ 131 (139)
+.+.||+ ++|-+.-..| ..|.|+.++.... .+.+.|| .+...|+.+|..+=.+.- .+++.+|+
T Consensus 27 v~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~~-------~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll 95 (119)
T 3b84_A 27 ATLDVGG--LVFKAHWSVLACCSHFFQSLYGDGS-------GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVL 95 (119)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTTTT-------CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHH
T ss_pred eEEEECC--EEEEeeHHHHhhcCHHHHHHHCCCC-------CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence 4566775 5777776666 4799999987631 5679998 678899999998887742 34455444
No 13
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=29.21 E-value=51 Score=22.53 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=30.3
Q ss_pred eeEE--EEcCCceEEEEecCCcCcHHHHHHHhhhhhhcCcccCCeEEe
Q 046189 59 HVPV--YVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYEQKGVLRI 104 (139)
Q Consensus 59 ~~~V--yVG~e~~RfvVp~~yLnhP~F~~LL~~aeeEfG~~~~G~L~I 104 (139)
.+.| |-+++-.|+-||. ...|+.|.++-.+-|++..+.++++
T Consensus 6 ~vkvK~~~~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp CEEEEEESSSCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred eEEEEEEeCCeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 3444 4444567888887 4689999999999999875555555
No 14
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=29.02 E-value=5.9 Score=27.82 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=10.6
Q ss_pred CCcCcHHHHHHHhh
Q 046189 76 ELLNHPVFVGLLNK 89 (139)
Q Consensus 76 ~yLnhP~F~~LL~~ 89 (139)
.|||||.|.-|-.-
T Consensus 5 ~YLNHPtFGlLy~V 18 (89)
T 2xko_C 5 NYLNHPTFGLLYQI 18 (89)
T ss_dssp CEEEETTTEEEEEE
T ss_pred ccccCCccchhhee
Confidence 59999999766543
No 15
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=28.73 E-value=1.2e+02 Score=19.76 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=45.6
Q ss_pred eEEEEcCCceEEEEecCCc--CcHHHHHHHhhhhhhcCcccCCeEEec-CcHHHHHHHHHHHHcCCC---hHHHHHHH
Q 046189 60 VPVYVGDEMERFVVSAELL--NHPVFVGLLNKSAQEYGYEQKGVLRIP-CHVVVFERVVESLRLGLE---SRDLQDLL 131 (139)
Q Consensus 60 ~~VyVG~e~~RfvVp~~yL--nhP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~l~~~~~---~~~~~~L~ 131 (139)
+.+.||+ ++|-+.-..| ..|.|+.++...-.| .....+.|+ .+...|+.++..+=.+.- .+++.+|+
T Consensus 28 v~l~v~~--~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~~~ll 100 (120)
T 2if5_A 28 VVILVEG--REFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDIL 100 (120)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGHHHHH
T ss_pred eEEEECC--EEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence 4566774 5787776666 479999998753222 345678998 689999999998887743 34555544
No 16
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=28.04 E-value=33 Score=23.53 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=39.0
Q ss_pred eEEEEcCCceEEEEecCCc-CcHHHHHHHhhhhhhcCcc-cCCeEEecCcHHHHHHHHHHHHcCC
Q 046189 60 VPVYVGDEMERFVVSAELL-NHPVFVGLLNKSAQEYGYE-QKGVLRIPCHVVVFERVVESLRLGL 122 (139)
Q Consensus 60 ~~VyVG~e~~RfvVp~~yL-nhP~F~~LL~~aeeEfG~~-~~G~L~IPC~~~~Fe~vl~~l~~~~ 122 (139)
+.+-||. .+|.+..+-| ++|. .+|..++...-++ .+|.+-|..+...|++||..++.|.
T Consensus 2 V~LNVGG--~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~g~ 62 (105)
T 1nn7_A 2 IVLNVSG--TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK 62 (105)
T ss_dssp EEEEETT--EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEECC--EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHhcCC
Confidence 4566885 5788775433 2331 1233333332333 5799999999999999999999984
No 17
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=25.31 E-value=1.3e+02 Score=20.77 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=43.2
Q ss_pred eEEEEcCCceEEEEecCCc--CcHHHHHHHhhhhhhcCcccCCeEEec-CcHHHHHHHHHHHHcCC
Q 046189 60 VPVYVGDEMERFVVSAELL--NHPVFVGLLNKSAQEYGYEQKGVLRIP-CHVVVFERVVESLRLGL 122 (139)
Q Consensus 60 ~~VyVG~e~~RfvVp~~yL--nhP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~l~~~~ 122 (139)
+.+.||+ ++|-+.-..| ..|.|+.++...-.| .....+.|| .+...|+.+|..+-.+.
T Consensus 37 v~l~v~~--~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~~l~~~Yt~~ 97 (172)
T 3htm_A 37 CCLCVAG--QEFQAHKAILAARSPVFSAMFEHEMEE---SKKNRVEINDVEPEVFKEMMCFIYTGK 97 (172)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHSCCCG---GGTTEEEECSSCHHHHHHHHHHHHHSC
T ss_pred eEEEECC--EEEEeeHHHHHHcCHHHHHHHccCccc---cCCCeEEecCCCHHHHHHHHHHHhCCC
Confidence 5677775 5788887777 469999999853111 235788997 78999999999888764
No 18
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=24.22 E-value=1.6e+02 Score=19.43 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=44.2
Q ss_pred eEEEEcCCceEEEEecCCc--CcHHHHHHHhhhhhhcCcccCCeEEec-CcHHHHHHHHHHHHcCCC---hHHHHHHH
Q 046189 60 VPVYVGDEMERFVVSAELL--NHPVFVGLLNKSAQEYGYEQKGVLRIP-CHVVVFERVVESLRLGLE---SRDLQDLL 131 (139)
Q Consensus 60 ~~VyVG~e~~RfvVp~~yL--nhP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~l~~~~~---~~~~~~L~ 131 (139)
+.+.||+ ++|-+.-..| ..|.|++++.. ....+.|+ .+...|+.++..+=.+.- .+++.+|+
T Consensus 31 v~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll 98 (121)
T 1buo_A 31 VVIMVDS--QEFHAHRTVLACTSKMFEILFHR--------NSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLL 98 (121)
T ss_dssp EEEEESS--CEEEECHHHHHHHCHHHHHHTTS--------CCSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHH
T ss_pred EEEEECC--EEEehhHHHHhhcCHHHHHHHcC--------CCcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHHHHHH
Confidence 4566775 4777776665 57899998864 24578888 789999999998887743 34555444
No 19
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=23.56 E-value=1.2e+02 Score=20.01 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=43.4
Q ss_pred eEEEEcCCceEEEEecCCc--CcHHHHHHHhhhhhhcCcccCCeEEecC-cHHHHHHHHHHHHcCCC---hHHHHHHH
Q 046189 60 VPVYVGDEMERFVVSAELL--NHPVFVGLLNKSAQEYGYEQKGVLRIPC-HVVVFERVVESLRLGLE---SRDLQDLL 131 (139)
Q Consensus 60 ~~VyVG~e~~RfvVp~~yL--nhP~F~~LL~~aeeEfG~~~~G~L~IPC-~~~~Fe~vl~~l~~~~~---~~~~~~L~ 131 (139)
+.+.||+ ++|-+.-..| ..|.|++++.. +...+.|+- +...|+.+|..+=.+.- .+++.+|+
T Consensus 30 v~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~~~ll 97 (119)
T 2q81_A 30 CTFVVDG--VHFKAHKAVLAACSEYFKMLFVD--------QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVL 97 (119)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHH--------CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTHHHHH
T ss_pred eEEEECC--EEEehhHHHHHHcCHHHHHHHcC--------CCCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence 4566775 5788877776 47999999975 234677774 78899999998887743 24444444
No 20
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=23.15 E-value=5.1 Score=32.47 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=18.6
Q ss_pred CCCCCCeeEEEEcCCceEEEEecCCcCcHHH
Q 046189 53 KPVPEGHVPVYVGDEMERFVVSAELLNHPVF 83 (139)
Q Consensus 53 ~~vpkG~~~VyVG~e~~RfvVp~~yLnhP~F 83 (139)
...|+||+|+.-.- +=.-+=..+|+||.|
T Consensus 208 l~AP~GHLP~~~~l--rGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 208 LSAPRGHLPLTNQL--RGVQVLNALLNHPAW 236 (238)
T ss_dssp TTSCTTCCSCCCCT--TCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCccc--ccHHHHHHHHcCccc
Confidence 36899999986421 111144678888876
No 21
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=21.18 E-value=37 Score=22.33 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=18.7
Q ss_pred cCCcCcHHHHHHHhhhhhhcC
Q 046189 75 AELLNHPVFVGLLNKSAQEYG 95 (139)
Q Consensus 75 ~~yLnhP~F~~LL~~aeeEfG 95 (139)
-.||+.-.|+.++.++.+||-
T Consensus 30 E~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 30 ENHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGGSCHHHHHHHHSSCHHHHH
T ss_pred HhcCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999973
No 22
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=20.56 E-value=79 Score=21.62 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=23.8
Q ss_pred eeEEEEcCCceEEEEecCCcCcHHHHHHHhhhhhhc
Q 046189 59 HVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEY 94 (139)
Q Consensus 59 ~~~VyVG~e~~RfvVp~~yLnhP~F~~LL~~aeeEf 94 (139)
-+.|.+|. .|++||-.- +.-....|.++|-.-|
T Consensus 4 KvtV~fg~--~~vvVPC~d-g~~tV~~L~~~A~~RY 36 (85)
T 2ns5_A 4 KVTVCFGR--TRVDVPCGD-GRMKVFSLIQQAVTRY 36 (85)
T ss_dssp EEEEEETT--EEEEEEESS-SCCCHHHHHHHHHHHH
T ss_pred EEEEEECC--EEEEEECCC-CcccHHHHHHHHHHHH
Confidence 47899995 699999765 3445577888776544
Done!