Query 046189
Match_columns 139
No_of_seqs 156 out of 654
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 16:38:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046189.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046189hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nn7a_ d.42.1.2 (A:) Potassiu 74.1 0.56 4.1E-05 31.2 1.4 59 60-122 2-62 (105)
2 d3kvta_ d.42.1.2 (A:) akv3.1 v 63.8 1.1 8.2E-05 29.4 1.1 59 59-122 3-65 (103)
3 d1y6ia2 a.261.1.1 (A:83-233) M 58.0 0.4 2.9E-05 34.6 -2.2 31 53-85 118-148 (151)
4 d1t1da_ d.42.1.2 (A:) Shaker p 50.3 4 0.00029 26.5 2.1 57 60-121 3-63 (100)
5 d1unda_ a.14.1.1 (A:) Advillin 43.1 4.9 0.00036 22.3 1.4 18 77-94 1-18 (36)
6 d2bkfa1 d.15.2.2 (A:1-85) Next 35.4 49 0.0036 21.0 6.2 54 59-114 6-68 (85)
7 d1af7a1 a.58.1.1 (A:11-91) Che 32.2 7.8 0.00057 23.6 1.2 58 78-135 12-80 (81)
8 d1vi7a2 d.58.11.2 (A:138-208) 29.8 48 0.0035 19.1 5.6 55 68-122 2-62 (71)
9 d2c35b2 d.230.1.1 (B:1-77) N-t 27.9 23 0.0017 21.3 2.9 36 69-104 9-46 (77)
10 d1qusa_ d.2.1.6 (A:) 36 kDa so 24.6 18 0.0013 28.2 2.3 47 75-121 13-59 (322)
11 d1owxa_ d.58.7.1 (A:) Lupus LA 24.1 24 0.0017 22.3 2.6 15 52-66 4-18 (113)
12 d3buxb3 d.93.1.1 (B:264-351) C 23.9 38 0.0028 21.8 3.5 38 56-95 36-74 (88)
13 d1yu5x1 a.14.1.1 (X:10-76) Vil 22.8 15 0.0011 22.7 1.3 20 75-94 30-49 (67)
No 1
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=74.09 E-value=0.56 Score=31.16 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=41.8
Q ss_pred eEEEEcCCceEEEEecCCc-CcHHHHHHHhhhhhhcCc-ccCCeEEecCcHHHHHHHHHHHHcCC
Q 046189 60 VPVYVGDEMERFVVSAELL-NHPVFVGLLNKSAQEYGY-EQKGVLRIPCHVVVFERVVESLRLGL 122 (139)
Q Consensus 60 ~~VyVG~e~~RfvVp~~yL-nhP~F~~LL~~aeeEfG~-~~~G~L~IPC~~~~Fe~vl~~l~~~~ 122 (139)
+.+-||. ++|.+..+-| ++|.. +|.+......+ +.+|.+-|..+...|++||..++.|.
T Consensus 2 I~LNVGG--~~f~t~~~TL~~~p~s--~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~ 62 (105)
T d1nn7a_ 2 IVLNVSG--TRFQTWQDTLERYPDT--LLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK 62 (105)
T ss_dssp EEEEETT--EEEEECHHHHHTSCSS--STTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEECC--EEEEEeHHHHhcCCCC--CccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCc
Confidence 5677886 5899987655 44431 12233333333 46899999999999999999999984
No 2
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=63.79 E-value=1.1 Score=29.39 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=41.7
Q ss_pred eeEEEEcCCceEEEEecCCcC-cH--HHHHHHhhhhhhcCcc-cCCeEEecCcHHHHHHHHHHHHcCC
Q 046189 59 HVPVYVGDEMERFVVSAELLN-HP--VFVGLLNKSAQEYGYE-QKGVLRIPCHVVVFERVVESLRLGL 122 (139)
Q Consensus 59 ~~~VyVG~e~~RfvVp~~yLn-hP--~F~~LL~~aeeEfG~~-~~G~L~IPC~~~~Fe~vl~~l~~~~ 122 (139)
.+.+=||. ++|.+..+-|. .| .|..+ +.....+. .+|.+-|.-+...|++||..++.|.
T Consensus 3 rI~LNVGG--~~F~t~~~tL~~~~~s~l~~~---~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~ 65 (103)
T d3kvta_ 3 RVIINVGG--IRHETYKATLKKIPATRLSRL---TEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGK 65 (103)
T ss_dssp EEEEEETT--EEEEEEHHHHTTSCSSTTTTC---CTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEEECC--EEEEEeHHHHhhCccchhHHH---HcCCCccCCCCCcEEecCCHHHHHHHHHHHccCC
Confidence 46677886 69999877665 23 22222 22222333 5789999999999999999999984
No 3
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=57.98 E-value=0.4 Score=34.62 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=19.6
Q ss_pred CCCCCCeeEEEEcCCceEEEEecCCcCcHHHHH
Q 046189 53 KPVPEGHVPVYVGDEMERFVVSAELLNHPVFVG 85 (139)
Q Consensus 53 ~~vpkG~~~VyVG~e~~RfvVp~~yLnhP~F~~ 85 (139)
...|+||+|+.-.--.-| +--..|+||.|.+
T Consensus 118 l~AP~GHLP~~~~lrG~~--~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 118 LSAPQGHLPLLNQLRGVR--VAESLYRHPVWSQ 148 (151)
T ss_dssp TTSCTTCCSCCCCTTCTH--HHHHHHTSTHHHH
T ss_pred CCCCCCCCCccchhhhHH--HHHHHHcCcchhh
Confidence 358999999854211011 3345889999864
No 4
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=50.31 E-value=4 Score=26.53 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=38.2
Q ss_pred eEEEEcCCceEEEEecCCcCc-H--HHHHHHhhhhhhcCc-ccCCeEEecCcHHHHHHHHHHHHcC
Q 046189 60 VPVYVGDEMERFVVSAELLNH-P--VFVGLLNKSAQEYGY-EQKGVLRIPCHVVVFERVVESLRLG 121 (139)
Q Consensus 60 ~~VyVG~e~~RfvVp~~yLnh-P--~F~~LL~~aeeEfG~-~~~G~L~IPC~~~~Fe~vl~~l~~~ 121 (139)
+.+-||. ++|.+..+-|.. | .+..|... .-.+ +.+|.+-|.-+...|++||..++.+
T Consensus 3 I~LNVGG--~~f~t~~~tL~~~p~s~l~~l~~~---~~~~~~~~g~~FiDRdp~~F~~IL~flR~~ 63 (100)
T d1t1da_ 3 VVINVSG--LRFETQLKTLNQFPDTLLGNPQKR---NRYYDPLRNEYFFDRNRPSFDAILYFYQSG 63 (100)
T ss_dssp EEEEETT--EEEEEEHHHHHTSTTSTTTCHHHH---GGGEETTTTEEEECSCSTTHHHHHHHHHTT
T ss_pred EEEEECC--EEEEEeHHHHhhCCCchhHHHHhC---CCcCCCCCCeEEEecCHHHHHHHHHHHhcC
Confidence 4567886 689988554432 3 22222221 1112 3579999999999999999999974
No 5
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.07 E-value=4.9 Score=22.26 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=16.6
Q ss_pred CcCcHHHHHHHhhhhhhc
Q 046189 77 LLNHPVFVGLLNKSAQEY 94 (139)
Q Consensus 77 yLnhP~F~~LL~~aeeEf 94 (139)
||+.-.|+.++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 899999999999999887
No 6
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.41 E-value=49 Score=20.96 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=38.6
Q ss_pred eeEEEEcCCceEEEEecCCcCcHHHHHHHhhhhhhcCcc---------cCCeEEecCcHHHHHHH
Q 046189 59 HVPVYVGDEMERFVVSAELLNHPVFVGLLNKSAQEYGYE---------QKGVLRIPCHVVVFERV 114 (139)
Q Consensus 59 ~~~VyVG~e~~RfvVp~~yLnhP~F~~LL~~aeeEfG~~---------~~G~L~IPC~~~~Fe~v 114 (139)
-|-|..|++..||.|+.. +++.|.+|..+-+.-||.+ .+-.++|.|+.++=|.+
T Consensus 6 tvKvtf~~dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~~ 68 (85)
T d2bkfa1 6 TLNVTFKNEIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEAL 68 (85)
T ss_dssp EEEEEETTEEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHH
T ss_pred EEEEEECCceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHHH
Confidence 344556778899998533 3677899999998888853 23458899998765543
No 7
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=32.16 E-value=7.8 Score=23.55 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=42.3
Q ss_pred cCcHHHHHHHhhhhhhcCccc-C----------CeEEecCcHHHHHHHHHHHHcCCChHHHHHHHHhhh
Q 046189 78 LNHPVFVGLLNKSAQEYGYEQ-K----------GVLRIPCHVVVFERVVESLRLGLESRDLQDLLSSVS 135 (139)
Q Consensus 78 LnhP~F~~LL~~aeeEfG~~~-~----------G~L~IPC~~~~Fe~vl~~l~~~~~~~~~~~L~~~~~ 135 (139)
|+.+.|..+.+...+..|..= + ....--+....|+.-+..|+++.+....++|++.|+
T Consensus 12 lsd~~f~~~~~~i~~~~Gi~l~~~K~~~l~~RL~~rm~~~g~~s~~~Y~~~L~~~~~~~e~~~li~~lT 80 (81)
T d1af7a1 12 LSDAHFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQAFINALT 80 (81)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHTCCCHHHHHHHHHHCTTCTHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCHHHHHHHHHHhc
Confidence 678899999999999988862 1 112233556678888888888765567888988774
No 8
>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.78 E-value=48 Score=19.06 Aligned_cols=55 Identities=15% Similarity=0.223 Sum_probs=38.5
Q ss_pred ceEEEEecCCcCcHHHHHHHhhhh-----hhcCcccCCeEEec-CcHHHHHHHHHHHHcCC
Q 046189 68 MERFVVSAELLNHPVFVGLLNKSA-----QEYGYEQKGVLRIP-CHVVVFERVVESLRLGL 122 (139)
Q Consensus 68 ~~RfvVp~~yLnhP~F~~LL~~ae-----eEfG~~~~G~L~IP-C~~~~Fe~vl~~l~~~~ 122 (139)
+.+|.+..+|=....++.+|++.. ++||-.-.=.+.|| -.+..|..-|.-+.+|.
T Consensus 2 ~t~~~l~~dY~~~~~v~~~L~~~~~~i~~~~y~~~V~l~v~vp~~~~~~f~~~l~d~t~G~ 62 (71)
T d1vi7a2 2 LTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGS 62 (71)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHTTCEEEEEEESSSEEEEEEECSSTHHHHHHHHHHHHTTC
T ss_pred ceEEEEEeccccHHHHHHHHHHCCCEEEeeeeccEEEEEEEECHHHHHHHHHHHHHhCCCc
Confidence 468999999999999999999873 35554322234444 35777877777666663
No 9
>d2c35b2 d.230.1.1 (B:1-77) N-terminal, heterodimerisation domain of RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.92 E-value=23 Score=21.26 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=27.4
Q ss_pred eEEEEecCCcCcHHHHHHHhhhhhhcCcc--cCCeEEe
Q 046189 69 ERFVVSAELLNHPVFVGLLNKSAQEYGYE--QKGVLRI 104 (139)
Q Consensus 69 ~RfvVp~~yLnhP~F~~LL~~aeeEfG~~--~~G~L~I 104 (139)
....||.++|+.+.-+.|.++..+.|.-. +++++.|
T Consensus 9 d~v~i~P~~~~~~~~~~i~~~L~~~~egk~~~~~G~~i 46 (77)
T d2c35b2 9 HEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVI 46 (77)
T ss_dssp EEEEECGGGCCSCHHHHHHHHHHHHHTTCEETTTEEEE
T ss_pred EEEEECHHHhCccHHHHHHHHHHHHhCCEEeCCCCEEE
Confidence 35679999999999999999998876332 4555554
No 10
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=24.60 E-value=18 Score=28.19 Aligned_cols=47 Identities=13% Similarity=0.293 Sum_probs=31.4
Q ss_pred cCCcCcHHHHHHHhhhhhhcCcccCCeEEecCcHHHHHHHHHHHHcC
Q 046189 75 AELLNHPVFVGLLNKSAQEYGYEQKGVLRIPCHVVVFERVVESLRLG 121 (139)
Q Consensus 75 ~~yLnhP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~l~~~ 121 (139)
-+|.+||.++.++++..+++||+.+-...+==.+.....++...++.
T Consensus 13 ~dya~~p~v~~Fi~~la~~~G~s~~~l~~~f~~~k~~~~vi~~~~~q 59 (322)
T d1qusa_ 13 GDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQ 59 (322)
T ss_dssp STTTTCHHHHHHHHHHHHHHCCCHHHHHHHHTTCCCCHHHHHHHHCC
T ss_pred CCcccCHHHHHHHHHHHHHhCCCHHHHHHHHHhCcccHHHHHHHhcc
Confidence 57999999999999999999998532212112344445556555544
No 11
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.07 E-value=24 Score=22.31 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.9
Q ss_pred CCCCCCCeeEEEEcC
Q 046189 52 SKPVPEGHVPVYVGD 66 (139)
Q Consensus 52 ~~~vpkG~~~VyVG~ 66 (139)
....|+|++-+|||.
T Consensus 4 ~~~~~~g~~~~fvgn 18 (113)
T d1owxa_ 4 SLEEKIGCLLKFSGD 18 (113)
T ss_dssp CCSCCCCCEEEEEES
T ss_pred CcCCCCCCeEEEECC
Confidence 457899999999994
No 12
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.89 E-value=38 Score=21.77 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=28.5
Q ss_pred CCCeeEE-EEcCCceEEEEecCCcCcHHHHHHHhhhhhhcC
Q 046189 56 PEGHVPV-YVGDEMERFVVSAELLNHPVFVGLLNKSAQEYG 95 (139)
Q Consensus 56 pkG~~~V-yVG~e~~RfvVp~~yLnhP~F~~LL~~aeeEfG 95 (139)
.-|.-++ ||-.+. =++-+--.|.|++|+|++-..|-|=
T Consensus 36 rlGQWAIGyvt~dg--~IlQTIp~nk~L~qaLidG~reGfy 74 (88)
T d3buxb3 36 RLGQWAIGYVTADG--NILQTIPHNKPLFQALIDGFREGFY 74 (88)
T ss_dssp STTSEEEEEECTTS--CEEEECCSSCCHHHHHHHHHHHTSS
T ss_pred cccceeeeeeccCC--ceeeeccCccHHHHHHHhcccceeE
Confidence 4466666 887653 3566777899999999999988653
No 13
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=22.82 E-value=15 Score=22.67 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=18.3
Q ss_pred cCCcCcHHHHHHHhhhhhhc
Q 046189 75 AELLNHPVFVGLLNKSAQEY 94 (139)
Q Consensus 75 ~~yLnhP~F~~LL~~aeeEf 94 (139)
-.||++-.|+.++.++.+||
T Consensus 30 E~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 30 ENHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGGSCHHHHHHHHSSCHHHH
T ss_pred HhhCCHHHHHHHHCcCHHHH
Confidence 37999999999999999987
Done!