BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046192
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 11/115 (9%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L V+DS + ++ +L+ + YQ V +G +A+ FL L D LII+D
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPD-----------LIISD 58
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125
MP M GY L R +K L+ IPV++++ + P + R LE GA++F KP +
Sbjct: 59 VLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCK 113
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 13/118 (11%)
Query: 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLII 68
+L DD +R +++RLL+ + ++V V+ + L+ + ED + +I
Sbjct: 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA--EED---------YDAVI 63
Query: 69 TDYCMPGMTGYDLLRKIK--ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
D MPGM G D+L++++ +++ ++ PVV++S++ P I C + GA F KPV
Sbjct: 64 VDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 121
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 11/118 (9%)
Query: 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVN 65
+L VDDS R++I+ L Y+ V + G +A E L D +++V+
Sbjct: 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-----DANADTKVL--- 55
Query: 66 LIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
ITD+ MP M G DL++K++ + K+IP++++++E + + L+ G + +KP
Sbjct: 56 --ITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 11/118 (9%)
Query: 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVN 65
+L VDDS R++I+ L Y+ V + G +A E L D +++V+
Sbjct: 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-----DANADTKVL--- 55
Query: 66 LIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
ITD+ MP M G DL++K++ + K+IP++++++E + + L+ G + +KP
Sbjct: 56 --ITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKP 111
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
VL VDDS + RK++ LK Y+V ++G ALE L D LI+ D
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPD-----------LIVLD 53
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
MP M G+ +L+K++E K IPV++++++ + L GA + KP
Sbjct: 54 IMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
Query: 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVN 65
+L VDDS R++I+ L Y+ V + G +A E L D +++V+
Sbjct: 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-----DANADTKVL--- 55
Query: 66 LIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
IT + MP M G DL++K++ + K+IP++++++E + + L+ G + +KP
Sbjct: 56 --ITAWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNS 59
M + + +L VDD R++++ LL+ + T D G AL L + D
Sbjct: 5 MEAILNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFD----- 59
Query: 60 QVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119
++TD+ MPGM G DLL+ I+ LK +PV+++++E +I + G +
Sbjct: 60 ------FVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGY 113
Query: 120 FLKPVQLA 127
+KP A
Sbjct: 114 IVKPFTAA 121
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLII 68
++ ++D + +LIE+ ++ + ++ A G AL +L +D+ + L++
Sbjct: 7 IVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYL--FGDDKSGRVSAGRAQLVL 64
Query: 69 TDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
D +P TG D+L+ +KE+ + PVVI+++ + I RC + GA + KPV
Sbjct: 65 LDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPV 120
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
VL VDDS + RK++ LK Y+V ++G ALE L D LI+
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPD-----------LIVLX 53
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
MP M G+ +L+K++E K IPV++++++ + L GA + KP
Sbjct: 54 IMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
+D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 2 SDKELKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 50
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 51 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
Query: 124 VQLA 127
A
Sbjct: 111 FTAA 114
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 3 MVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQV 61
M +D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 MRSDKELKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QA 49
Query: 62 IQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +
Sbjct: 50 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 109
Query: 122 KPVQLA 127
KP A
Sbjct: 110 KPFTAA 115
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD I+R+L+ L + YQ + G AL L N ++++++D
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS-------KN----HIDIVLSD 59
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQL 126
MP M GY L ++I++ +PV+ +++ + RCLE G + KPV L
Sbjct: 60 VNMPNMDGYRLTQRIRQLGLT--LPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 113
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD I+R+L+ L + YQ + G AL L N ++++++D
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-------SKN----HIDIVLSD 180
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQL 126
MP M GY L ++I++ +PV+ +++ + RCLE G + KPV L
Sbjct: 181 VNMPNMDGYRLTQRIRQLG--LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 234
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 49
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+I+D+ MP M G +LL+ I+ ++ +PV++++SE I + GA + +K
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVK 109
Query: 123 PVQLA 127
P A
Sbjct: 110 PFTAA 114
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD + +L+E L Y+V+ G AL D +I+ D
Sbjct: 5 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPD-----------IILLD 53
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
MPGM G+ + RK+K+ + + IPVV++++ + + LE GA +F KP+
Sbjct: 54 VMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+L VDD + +L+E L Y+V+ G AL D +I+
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPD-----------IILL 51
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
D MPGM G+ + RK+K+ + + IPVV++++ + + LE GA +F KP+
Sbjct: 52 DVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 49
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
II+D+ MP M G +LL+ I+ +++ +PV+++++E I + GA + +K
Sbjct: 50 GFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 123 PVQLA 127
P A
Sbjct: 110 PFTAA 114
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
II+D+ MP M G +LL+ I+ +++ +PV+++++E I + GA + +KP
Sbjct: 50 FGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQV 64
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGGY 51
Query: 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 52 GFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPF 111
Query: 125 QLA 127
A
Sbjct: 112 TAA 114
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
+D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 2 SDKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 50
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 51 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
Query: 124 VQLA 127
A
Sbjct: 111 FTAA 114
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 49
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +K
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 123 PVQLA 127
P A
Sbjct: 110 PFTAA 114
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 49
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +K
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVK 109
Query: 123 PVQLA 127
P A
Sbjct: 110 PFTAA 114
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFL----GLLNEDEQTNSQVIQV 64
+L V+DS D +RLL+ + +G++AL+FL N D VI
Sbjct: 9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVI-- 66
Query: 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
+ D +PG G ++L++IK+ LK IPVVIM++ + P I C + +KP+
Sbjct: 67 ---LLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPL 123
Query: 125 QL 126
++
Sbjct: 124 EI 125
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 49
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +K
Sbjct: 50 GYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 123 PVQLA 127
P A
Sbjct: 110 PFTAA 114
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQV 64
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGGY 50
Query: 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 51 GFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
Query: 125 QLA 127
A
Sbjct: 111 TAA 113
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
II D+ MP M G +LL+ I+ +++ +PV+++++E I + GA + +KP
Sbjct: 50 FGFIICDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 49
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +K
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 123 P 123
P
Sbjct: 110 P 110
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++E + + GA + +KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++ I + GA + +KP
Sbjct: 50 YGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 13/137 (9%)
Query: 5 TDSQF----HVLAVDDSIIDRKLIE-RLLKTSSYQVTAVDSGNKALEFL--GLLNEDEQT 57
+D +F VL VDD+ I RK+ +L K +V DSG +AL + GL +EQ
Sbjct: 54 SDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQG 113
Query: 58 NSQVIQVNLIITDYCMPGMTGYDL---LRKIKESASLKDIPVVIMSSENIPSRINR-CLE 113
+ + + I D MP M GY+ +RK+++S ++ P++ +S + S R ++
Sbjct: 114 SVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVR-TPIIAVSGHDPGSEEARETIQ 172
Query: 114 EGAEEFFLKPV-QLADV 129
G + F K + QLA+V
Sbjct: 173 AGMDAFLDKSLNQLANV 189
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 49
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+I+D+ MP M G +LL+ I+ ++ +PV++++ E I + GA + +K
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVK 109
Query: 123 PVQLA 127
P A
Sbjct: 110 PFTAA 114
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 49
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+I+D+ MP M G +LL+ I+ ++ +PV++++ E I + GA + +K
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVK 109
Query: 123 PVQLA 127
P A
Sbjct: 110 PFTAA 114
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++ I + GA + +KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 4 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 52
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+I+D+ MP M G +LL+ I+ ++ +PV++++++ I + GA + +K
Sbjct: 53 GYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVK 112
Query: 123 PVQLA 127
P A
Sbjct: 113 PFTAA 117
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++ I + GA + +KP
Sbjct: 50 YGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 3 MVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQV 61
M +D + L V D R+++ LLK + V + G AL L Q
Sbjct: 1 MRSDKELKFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QA 49
Query: 62 IQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +
Sbjct: 50 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 109
Query: 122 KPVQLA 127
KP A
Sbjct: 110 KPFTAA 115
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 58/95 (61%), Gaps = 6/95 (6%)
Query: 11 VLAVDDSIIDRKLIERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLII 68
+L V+DS D +L++ +LKTS+ +++ + G A+ FL + E NS + NLI+
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQ--QQGEYENSP--RPNLIL 66
Query: 69 TDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSEN 103
D +P G ++L +IK++ LK IPVV++++ +
Sbjct: 67 LDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSH 101
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 8 QFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNL 66
+ L VDD+ R+++ LLK + V + G AL L Q
Sbjct: 1 ELKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGGYGF 49
Query: 67 IITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQL 126
+I+D+ MP M G +LL+ I+ ++ +PV++ ++E I + GA + +KP
Sbjct: 50 VISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTA 109
Query: 127 A 127
A
Sbjct: 110 A 110
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++ +E I + GA + +KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++ +E I + GA + +KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 4 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 52
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+I+D+ MP M G +LL+ I+ ++ +PV++++++ I + GA + +K
Sbjct: 53 GYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVK 112
Query: 123 PVQLA 127
P A
Sbjct: 113 PFTAA 117
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++ I + GA + +KP
Sbjct: 50 YGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++ I + GA + +KP
Sbjct: 50 YGFVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 4 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 52
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+I+D+ MP M G +LL+ I+ ++ +PV+++++ I + GA + +K
Sbjct: 53 GYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVK 112
Query: 123 PVQLA 127
P A
Sbjct: 113 PFTAA 117
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 8 QFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNL 66
+ L VDD+ R++ LLK + V + G AL L Q
Sbjct: 1 ELKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKL-----------QAGGYGF 49
Query: 67 IITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQL 126
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 50 VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTA 109
Query: 127 A 127
A
Sbjct: 110 A 110
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 49
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+I+ + MP M G +LL+ I+ ++ +PV+++++E I + GA + +K
Sbjct: 50 GYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 123 PVQLA 127
P A
Sbjct: 110 PFTAA 114
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
+D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 SDKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+ + MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 50 YGFVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 11 VLAVDDSIIDRKLIERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLII 68
+L V+DS D +L++ +LKTS+ +++ + G A FL + E NS + NLI+
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAXAFLQ--QQGEYENSP--RPNLIL 66
Query: 69 TDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSEN 103
D +P G ++L +IK++ LK IPVV++++ +
Sbjct: 67 LDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSH 101
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+L V+D + R L++ + G ALE LG D L+I
Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPD-----------LMIC 57
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
D MP M G LL I+ PV+++S+ + I + L G E+ LKPV+ D+
Sbjct: 58 DIAMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK--DL 113
Query: 130 NKLK 133
N+L+
Sbjct: 114 NRLR 117
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVI 62
+ D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 4 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAG 52
Query: 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+I+D+ MP M G +LL+ I+ ++ +PV+++++ I + GA + +K
Sbjct: 53 GYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVK 112
Query: 123 PVQLA 127
P A
Sbjct: 113 PFTAA 117
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+ + MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 50 YGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
V VDD R ++ER L + T ++GN+ L L D ++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD-----------VLLSD 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
MPGM G LL++IK+ + +PV+IM++ + ++GA ++ KP
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
V VDD R ++ER L + T ++GN+ L L D ++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD-----------VLLSD 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
MPGM G LL++IK+ + +PV+IM++ + ++GA ++ KP
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQV 64
D + L VD R+++ LLK + V + G AL L Q
Sbjct: 1 DKELKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGGY 49
Query: 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 50 GFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 109
Query: 125 QLA 127
A
Sbjct: 110 TAA 112
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
V VDD R ++ER L + T ++GN+ L L D ++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD-----------VLLSD 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
MPGM G LL++IK+ + +PV+IM++ + ++GA ++ KP
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L +DD + R+ + L+ S+++V +G + L+ E EQ + L+I D
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIF----ESEQPD-------LVICD 56
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125
P + G +L+R+I+++AS + P++++S + S L GA ++ +KP++
Sbjct: 57 LRXPQIDGLELIRRIRQTAS--ETPIIVLSGAGVXSDAVEALRLGAADYLIKPLE 109
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L +DD + R+ + L+ S+++V +G + L+ E EQ + L+I D
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIF----ESEQPD-------LVICD 56
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125
P + G +L+R+I+++AS + P++++S + S L GA ++ +KP++
Sbjct: 57 LRXPQIDGLELIRRIRQTAS--ETPIIVLSGAGVMSDAVEALRLGAADYLIKPLE 109
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+L V+D R+++ +L+ + +Q + + A+ LNE +LI+
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAV---NQLNEP--------WPDLILL 52
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
D+ +PG +G ++ +K + +DIPVV++++ R LE GA+++ KP ++
Sbjct: 53 DWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKEL 112
Query: 130 NKLKPHLMKGIS 141
+M+ IS
Sbjct: 113 VARIKAVMRRIS 124
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQV--NLII 68
VL VDD + + + R L +G+++++F + Q +Q +Q+ +I+
Sbjct: 19 VLLVDDQAMIGEAVRRGL-----------AGHESIDF-HFCADPHQAIAQAVQIKPTVIL 66
Query: 69 TDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK-PVQLA 127
D MPG+ G L+R+ + + +DIP++++S++ P + GA ++ +K P +
Sbjct: 67 QDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVKLPDNIE 126
Query: 128 DVNKLKPH 135
V +++ H
Sbjct: 127 LVARIRYH 134
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+L V+D R+++ +L+ + +Q + + A+ LNE +LI+
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAV---NQLNEP--------WPDLILL 52
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
D+ +PG +G ++ +K + +DIPVV++++ R LE GA+++ KP ++
Sbjct: 53 DWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKEL 112
Query: 130 NKLKPHLMKGIS 141
+M+ IS
Sbjct: 113 VARIKAVMRRIS 124
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+ + MP M G +LL+ I+ ++ +PV+++ +E I + GA + +KP
Sbjct: 50 YGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VDD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+ + MP M G +LL+ I+ ++ +PV+++ +E I + GA + +KP
Sbjct: 50 YGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNL---I 67
+L VDD + +E +L+ + Y+V SG +AL Q I NL +
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEAL--------------QQIYKNLPDAL 52
Query: 68 ITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125
I D +PG+ GY L +++++ K +P++ ++++ S E GA ++ KP +
Sbjct: 53 ICDVLLPGIDGYTLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFE 110
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L V + + + LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ MP M G +LL+ I+ ++ +PV+++++E I + GA + +KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+L VDD +++ +L+ + + G +AL T + ++ +L++
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQAL-----------TAVRELRPDLVLL 55
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125
D +PGM G D+ R ++ + +P+V+++++ + LE GA+++ +KP +
Sbjct: 56 DLMLPGMNGIDVCRVLRADSG---VPIVMLTAKTDTVDVVLGLESGADDYIMKPFK 108
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
V VDD R ++ER L + T ++GN+ L L D ++++
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD-----------VLLSX 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
MPGM G LL++IK+ + +PV+IM++ + ++GA ++ KP
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
V VDD + R+ + LL+++ ++V D + LE + + Q ++ D
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLE-----------HRRPEQHGCLVLD 55
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSE-NIPSRINRCLEEGAEEFFLKPVQ 125
MPGM+G +L ++ +A IP+V +++ +IP + R ++ GA EF KP +
Sbjct: 56 MRMPGMSGIELQEQL--TAISDGIPIVFITAHGDIPMTV-RAMKAGAIEFLPKPFE 108
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 17/116 (14%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
VL V+DS L ++ +K Y + V++G A++F+ E++ Q LII D
Sbjct: 7 VLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFI------ERSKPQ-----LIILD 55
Query: 71 YCMPGMTGYDLLRKIKESASLKDIP--VVIMSSENIPSRINRCLEEGAEEFFLKPV 124
+P M+G D+L I ++ DIP V+I ++ +++GAE+F KP+
Sbjct: 56 LKLPDMSGEDVLDWINQN----DIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPI 107
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 53 EDEQTNSQVIQVN-----LIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSR 107
E E +S V Q+N LI+ ++ +PG +G ++ +K + +DIPVV++++
Sbjct: 31 EAEDYDSAVNQLNEPWPDLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEED 90
Query: 108 INRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141
R LE GA+++ KP ++ +M+ IS
Sbjct: 91 RVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 62 IQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121
I+ +I+ D MPG+ G LL + + + +DIP++++S++ P+ + GA ++ +
Sbjct: 62 IKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLV 121
Query: 122 K-PVQLADVNKLKPH 135
K P + V +++ H
Sbjct: 122 KLPDAIELVARIRYH 136
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L +DD + I+ LL+ +V S + L E NS ++++ITD
Sbjct: 6 ILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIF-----TENCNS----IDVVITD 56
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVN 130
MP ++G D+LR+IK+ + V+I++ ++EGA E+ KPV D++
Sbjct: 57 MKMPKLSGMDILREIKKITP--HMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLS 114
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
VL V+D+ ++ KL LL+ Y+ G AL ++ + +LI+ D
Sbjct: 4 VLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSI-----------ARENKPDLILMD 52
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQL 126
+P ++G ++ + +KE L IPVV +++ + R E G E + KP+ +
Sbjct: 53 IQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISV 108
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
V +DD RK +++ L+ + + V++ S +AL GL + ++I+D
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALA--GLSAD---------FAGIVISD 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSE-NIPSRINRCLEEGAEEFFLKP 123
MPGM G L RKI A D+P+++++ +IP + +++GA +F KP
Sbjct: 55 IRMPGMDGLALFRKIL--ALDPDLPMILVTGHGDIPMAVQ-AIQDGAYDFIAKP 105
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
V +DD RK +++ L+ + + V++ S +AL GL + ++I+D
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALA--GLSAD---------FAGIVISD 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSE-NIPSRINRCLEEGAEEFFLKP 123
MPGM G L RKI A D+P+++++ +IP + +++GA +F KP
Sbjct: 55 IRMPGMDGLALFRKIL--ALDPDLPMILVTGHGDIPMAVQ-AIQDGAYDFIAKP 105
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQ 63
D + L VD R+++ LLK + V + G AL L Q
Sbjct: 1 ADKELKFLVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGG 49
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
+I+D+ P G +LL+ I+ + +PV+ +++E I + GA + +KP
Sbjct: 50 YGFVISDWNXPNXDGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKP 109
Query: 124 VQLA 127
A
Sbjct: 110 FTAA 113
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 62/115 (53%), Gaps = 18/115 (15%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD ++E L+ Y+V GN+A+E + + +Q +LI+ D
Sbjct: 5 ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-----------EELQPDLILLD 53
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRC--LEEGAEEFFLKP 123
+P G ++ R++++ D+P++++++++ S I++ LE GA+++ KP
Sbjct: 54 IMLPNKDGVEVCREVRKKY---DMPIIMLTAKD--SEIDKVIGLEIGADDYVTKP 103
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
V VDD R ++ +L + + + + DSG + ++ L ++ S V+ + D
Sbjct: 10 VXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLL------KKGFSGVV-----LLD 58
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
PG G+D +R I +++ + I +V ++++N P L+E ++ KP
Sbjct: 59 IXXPGXDGWDTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYITKP 111
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 62/115 (53%), Gaps = 18/115 (15%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD ++E L+ Y+V GN+A+E + + +Q +LI+ D
Sbjct: 5 ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-----------EELQPDLILLD 53
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRC--LEEGAEEFFLKP 123
+P G ++ R++++ D+P++++++++ S I++ LE GA+++ KP
Sbjct: 54 IMLPNKDGVEVCREVRKKY---DMPIIMLTAKD--SEIDKVIGLEIGADDYVTKP 103
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 11/132 (8%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+L V+D R+++ +L+ + +Q + + A+ LNE +LI+
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAV---NQLNEP--------WPDLILL 52
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
+ +PG +G ++ +K + +DIPVV++++ R LE GA++ KP ++
Sbjct: 53 AWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKEL 112
Query: 130 NKLKPHLMKGIS 141
+M+ IS
Sbjct: 113 VARIKAVMRRIS 124
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 11/132 (8%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+L V+D R+++ +L+ + +Q + + A+ LNE +LI+
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAV---NQLNEP--------WPDLILL 52
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
+ +PG +G ++ ++ + +DIPVV++++ R LE GA++ KP ++
Sbjct: 53 AWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKEL 112
Query: 130 NKLKPHLMKGIS 141
+M+ IS
Sbjct: 113 VARIKAVMRRIS 124
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 9 FHVLAVDDSIIDRKLIERLLKTSSYQV--TAVDSGNKALEFLGLLNEDEQTNSQVIQVNL 66
F+VL VDDS+ K + ++ + + + TA D +++ ++ N + V L
Sbjct: 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKY-----KNHYPNIDI--VTL 89
Query: 67 IITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQL 126
IT MP M G L I E K+ V+++S+ + CL +GA+ F +KP+
Sbjct: 90 XIT---MPKMDGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDR 144
Query: 127 ADV 129
A V
Sbjct: 145 AKV 147
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
H+L V+D ++ R ++ + + Y V G + + L + +NL+I
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-----------INLVIM 53
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRC--LEEGAEEFFLKP 123
D +PG G L R+++E A+ V +M + +++ LE GA+++ KP
Sbjct: 54 DINLPGKNGLLLARELREQAN-----VALMFLTGRDNEVDKILGLEIGADDYITKP 104
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 11 VLAVDDSIIDRKLIERLL--KTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLII 68
VL V+D+ D LI R+L K Q+ VD+G KAL Q + +LII
Sbjct: 8 VLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKAL-----------YQVQQAKYDLII 56
Query: 69 TDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGA 116
D +P G+++ +++ + + P+VI++ R +C GA
Sbjct: 57 LDIGLPIANGFEVXSAVRKPGANQHTPIVILTDNVSDDRAKQCXAAGA 104
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD IER+LK +QV +G D + ++ D
Sbjct: 9 ILVVDDDQAMAAAIERVLKRDHWQVEIAHNGF-----------DAGIKLSTFEPAIMTLD 57
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
MP + G D++R ++++ + + P +++ S +++ + + EGA+++ KP
Sbjct: 58 LSMPKLDGLDVIRSLRQN-KVANQPKILVVSGLDKAKLQQAVTEGADDYLEKP 109
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 63/116 (54%), Gaps = 19/116 (16%)
Query: 27 LLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86
LL+ ++ T V G AL E ++ + ++++ D +PGM+G D+ ++++
Sbjct: 23 LLRKEGFEATVVTDGPAALA------EFDRAGA-----DIVLLDLMLPGMSGTDVCKQLR 71
Query: 87 ESASLKDIPVVIMSSENIPSRINRC--LEEGAEEFFLKPVQLAD-VNKLKPHLMKG 139
+S +PV+++++ + S I++ LE GA+++ KP + + +++ L +G
Sbjct: 72 ARSS---VPVIMVTARD--SEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
H+L V+D ++ R ++ + + Y V G + + L + +NL+I
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILSEYD-----------INLVIX 53
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
D +PG G L R+++E A++ + +N +I LE GA+++ KP
Sbjct: 54 DINLPGKNGLLLARELREQANVA--LXFLTGRDNEVDKI-LGLEIGADDYITKP 104
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
+LIIT+ MP ++G DL +K++ IPV+ +S + L+ G +F KPV
Sbjct: 54 HLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPV 113
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
VL +D++ + R + + LL +VT V S + L + +E + ++ D
Sbjct: 10 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS--HEHK----------VVFMD 57
Query: 71 YCMPGMTGYDLLRKIKE--SASLKDIPVVIMSSENI-PSRINRCLEEGAEEFFLKPVQLA 127
CMPG+ Y + +I E + P+++ S N S +C+ G + LKPV L
Sbjct: 58 VCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLD 117
Query: 128 DV 129
++
Sbjct: 118 NI 119
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
H++ V+D + + ++ Y V+ SG L E Q S V+LI+
Sbjct: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAG-------LREIXQNQS----VDLILL 52
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRC--LEEGAEEFFLKPVQLA 127
D +P G L R ++E +++ I V S RI+R LE GA+++ KP++L
Sbjct: 53 DINLPDENGLXLTRALRERSTVGIILVTGRSD-----RIDRIVGLEXGADDYVTKPLELR 107
Query: 128 DV 129
++
Sbjct: 108 EL 109
>pdb|3CNB|A Chain A, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|B Chain B, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|C Chain C, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
Length = 143
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 60 QVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119
++ ++++ D M GM G+ + +IK + + +I V+ M+ ++R + GAE
Sbjct: 51 HTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETC 110
Query: 120 FLKPVQLADVNK 131
F KP+ + K
Sbjct: 111 FGKPLNFTLLEK 122
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLII 68
VL VDD+ R +++ ++ + Y+V +G +A+E L D ++
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPD-----------IVT 52
Query: 69 TDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125
D MP M G D +++I + + +++ S+ + + ++ GA++F +KP Q
Sbjct: 53 MDITMPEMNGIDAIKEIMKIDP--NAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 107
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLII 68
VL VDD+ R +++ ++ + Y+V +G +A+E L D ++
Sbjct: 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPD-----------IVT 51
Query: 69 TDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125
D MP M G D +++I + + +++ S+ + + ++ GA++F +KP Q
Sbjct: 52 MDITMPEMNGIDAIKEIMKIDP--NAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 106
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD R L+ + YQ +G +AL+ + D L++ D
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD-----------LVLLD 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
+PGM G ++L+++K ++I V+IM++ I E GA F KP + ++
Sbjct: 55 MKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 111
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD R L+ + YQ +G +AL+ + D L++ D
Sbjct: 8 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD-----------LVLLD 56
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
+PGM G ++L+++K ++I V+IM++ I E GA F KP + ++
Sbjct: 57 MKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 113
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 8 QFHVLAVDDSIIDRKLIERLLKTSSYQ--VTAVDSGNKALEFLGLLNEDEQTNSQVIQVN 65
+ V+ DD + R+ + R L S V D G ALE + + + V
Sbjct: 15 KVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELI---------KAHLPDVA 65
Query: 66 LIITDYCMPGMTGYDLLRKIKESASLKDIP--VVIMSSENIPSRINRCLEEGAEEFFLK 122
L+ DY MPGM G + ++ ++P V+++S+ + P+ + + L++GA F LK
Sbjct: 66 LL--DYRMPGMDGAQVAAAVRS----YELPTRVLLISAHDEPAIVYQALQQGAAGFLLK 118
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 2 GMVTDSQFHV-----LAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDE 55
G TD+ V +A D+++I L E +L+ Y++ G +A+E L D
Sbjct: 3 GPTTDADAAVPRRVLIAEDEALIRMDLAE-MLREEGYEIVGEAGDGQEAVELAELHKPD- 60
Query: 56 QTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEG 115
L+I D MP G D +I AS + P+V++++ + + R + G
Sbjct: 61 ----------LVIMDVKMPRRDGIDAASEI---ASKRIAPIVVLTAFSQRDLVERARDAG 107
Query: 116 AEEFFLKPVQLADV 129
A + +KP ++D+
Sbjct: 108 AMAYLVKPFSISDL 121
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLII 68
+VL ++D + R L+E L +V + + G +A + LL+E N+++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYK---LLSEK--------HFNVVL 49
Query: 69 TDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLAD 128
+P + G ++L+ IKE + ++ +VI I + + ++ GA +F KP L +
Sbjct: 50 LXLLLPDVNGLEILKWIKERSPETEV-IVITGHGTIKTAVE-AMKMGAYDFLTKPCMLEE 107
Query: 129 V 129
+
Sbjct: 108 I 108
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD R L+ + YQ +G +AL+ + D L++ D
Sbjct: 6 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD-----------LVLLD 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
+PGM G ++L+++K ++I V+IM++ I E GA F KP + ++
Sbjct: 55 MKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 111
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD R L+ + YQ +G +AL+ + D L++ D
Sbjct: 4 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD-----------LVLLD 52
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
+PGM G ++L+++K ++I V+IM++ I E GA F KP + ++
Sbjct: 53 MKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 109
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+L VDD R L+ + YQ +G +AL+ + D L++
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD-----------LVLL 53
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
D +PGM G ++L+++K ++I V+IM++ I E GA F KP + ++
Sbjct: 54 DMKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEI 111
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNL 66
S + +L VDDS + L+ Y+ SG + LE L D L
Sbjct: 2 SLYTILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPPD-----------L 50
Query: 67 IITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENI-PSRINRCLEEGA--EEFFLKP 123
++ D G++ L +IK + +DIPV+ ++++ + P N E G+ E++ LKP
Sbjct: 51 VLLDIXXEPXDGWETLERIKTDPATRDIPVLXLTAKPLTPEEAN---EYGSYIEDYILKP 107
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
+L+I D + G +L K+K S LK++P++++ S I L GA+++ KP
Sbjct: 48 DLVILDXDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPF 107
Query: 125 QLAD-VNKLKPHL 136
D +++++ HL
Sbjct: 108 NRNDLLSRIEIHL 120
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
+LI+ D +P G D++++++++++L P++++++ + R L GA+++ +KP
Sbjct: 83 DLILLDLGLPDFDGGDVVQRLRKNSAL---PIIVLTARDTVEEKVRLLGLGADDYLIKPF 139
Query: 125 Q 125
Sbjct: 140 H 140
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 2 GMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQV 61
G T + VL VDD +L+ LK ++V +G +AL+ ++
Sbjct: 17 GENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALD-----------RARE 65
Query: 62 IQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121
+ + +I D PG G+ +LR+++ A D P + +++ + L G +++
Sbjct: 66 TRPDAVILDVXXPGXDGFGVLRRLR--ADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT 123
Query: 122 KPVQLADV 129
KP L +V
Sbjct: 124 KPFSLEEV 131
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 16/117 (13%)
Query: 24 IERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83
+ER L+ S ++V G +AL ++ + + I+ D MP + G ++
Sbjct: 23 LERGLRLSGFEVATAVDGAEALR-----------SATENRPDAIVLDINMPVLDGVSVVT 71
Query: 84 KIKESASLKDIPVVIMSSE-NIPSRINRCLEEGAEEFFLKPVQLAD-VNKLKPHLMK 138
++ A D+PV ++S+ ++ R+ LE GA+++ +KP LA+ V ++K L +
Sbjct: 72 ALR--AMDNDVPVCVLSARSSVDDRVA-GLEAGADDYLVKPFVLAELVARVKALLRR 125
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 7 SQFHVLAVDDSIIDRKLIERLLKT-SSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQV 64
S ++V+ VDD+ + R I +KT ++V A +G +AL+ L Q N V
Sbjct: 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLA-----AQPN-----V 61
Query: 65 NLIITDYCMPGMTGYDLLR--KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+LI+ D MP M G + LR K+K A + + V +S R E GA+ K
Sbjct: 62 DLILLDIEMPVMDGMEFLRHAKLKTRAKICMLSSVAVSGS---PHAARARELGADGVVAK 118
Query: 123 P 123
P
Sbjct: 119 P 119
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 18/116 (15%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+L VDD +I+ + Y+V +G +AL EQ ++ Q ++II
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAL---------EQFEAE--QPDIIIL 51
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRC--LEEGAEEFFLKP 123
D +P + G ++ + I++++S +P++++S+++ S ++ LE GA+++ KP
Sbjct: 52 DLMLPEIDGLEVAKTIRKTSS---VPILMLSAKD--SEFDKVIGLELGADDYVTKP 102
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD R L+ + YQ +G +AL+ + D L++ D
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD-----------LVLLD 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
+PGM G ++ +++K ++I V+IM++ I E GA F KP + ++
Sbjct: 55 MKIPGMDGIEIAKRMK--VIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 111
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD R L+ + YQ +G +AL+ + D L++ D
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD-----------LVLLD 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
+PGM G ++L+++K ++I V+IM++ E GA F KP + ++
Sbjct: 55 MKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEI 111
>pdb|3HDV|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|D Chain D, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
Length = 136
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
VL VDD+ ++R+ + LK+ D +A +L ++ L ITD
Sbjct: 10 VLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQK----------RIGLXITD 59
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVN 130
+G DL+R I+ S + ++++S + G +F LKPV L +
Sbjct: 60 LRXQPESGLDLIRTIRASER-AALSIIVVSGDTDVEEAVDVXHLGVVDFLLKPVDLGKLL 118
Query: 131 KL 132
+L
Sbjct: 119 EL 120
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD L++ L+ S Y V G +AL+ ++ + +LI+ D
Sbjct: 6 ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALK-----------KAETEKPDLIVLD 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVN 130
+P + G ++ +++++ + P++++++++ LE GA+++ KP +VN
Sbjct: 55 VMLPKLDGIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVN 112
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVN 65
+ +L V+D+ +++++I+R+L + + G +A + + ++ S+ N
Sbjct: 1 TSVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKV------KELTSKGENYN 54
Query: 66 LIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125
+I D MP + G + I+ P+V +++ S I CLE G F KP++
Sbjct: 55 MIFMDVQMPKVDGLLSTKMIRRDLGYTS-PIVALTAFADDSNIKECLESGMNGFLSKPIK 113
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
+LII D +P G + +R +++ ++ +PV+++S+ + S L+ GA+++ KP
Sbjct: 47 DLIILDLGLPDGDGIEFIRDLRQWSA---VPVIVLSARSEESDKIAALDAGADDYLSKPF 103
Query: 125 QLADVN 130
+ ++
Sbjct: 104 GIGELQ 109
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+L V+D+ +++++I+R+L + + G +A + + ++ S+ N+I
Sbjct: 4 ILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKV------KELTSKGENYNMIFM 57
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125
D MP + G + I+ P+V +++ S I CLE G F KP++
Sbjct: 58 DVQMPKVDGLLSTKMIRRDLGYTS-PIVALTAFADDSNIKECLESGMNGFLSKPIK 112
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query: 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVN 65
D H+ VDD RK + +L + + V S L F + ++
Sbjct: 3 DYTVHI--VDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAF-----------APDVRNG 49
Query: 66 LIITDYCMPGMTGYDLLRKIKESASLK-DIP-VVIMSSENIPSRINRCLEEGAEEFFLKP 123
+++TD MP M+G +LLR + + LK +IP +VI ++P + ++ GA +F KP
Sbjct: 50 VLVTDLRMPDMSGVELLRNLGD---LKINIPSIVITGHGDVPMAV-EAMKAGAVDFIEKP 105
Query: 124 VQ 125
+
Sbjct: 106 FE 107
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 59/113 (52%), Gaps = 14/113 (12%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
++A D +++ + +++ + +++ A D+G A++ + E+ N N++I
Sbjct: 7 IIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLI------EEYNP-----NVVIL 55
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
D MPGMTG ++L +I++ +I V+I+++ P + + + + LK
Sbjct: 56 DIEMPGMTGLEVLAEIRKKHL--NIKVIIVTTFKRPGYFEKAVVNDVDAYVLK 106
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 7 SQFHVLAVDDSIIDRKLIERLLKT-SSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQV 64
S ++V+ VDD+ + R I +KT ++V A +G +AL+ L Q N V
Sbjct: 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLA-----AQPN-----V 61
Query: 65 NLIITDYCMPGMTGYDLLR--KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122
+LI+ + MP M G + LR K+K A + + V +S R E GA+ K
Sbjct: 62 DLILLNIEMPVMDGMEFLRHAKLKTRAKICMLASVAVSGS---PHAARARELGADGVVAK 118
Query: 123 P 123
P
Sbjct: 119 P 119
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L VDD R L+ + YQ +G +AL+ + D L++
Sbjct: 6 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD-----------LVLLX 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
+PGM G ++L+++K ++I V+IM++ I E GA F KP + ++
Sbjct: 55 MKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 111
>pdb|2GKG|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot
pdb|2I6F|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|B Chain B, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|C Chain C, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
Length = 127
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 75 GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
G GY + K+K+ LK++P+VI+ + + ++ +R L+ A+E+ KPV
Sbjct: 62 GQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQ-HRKLKAHADEYVAKPV 110
>pdb|2NT4|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot (H92f Mutant)
Length = 127
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 75 GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
G GY + K+K+ LK++P+VI+ + + ++ R L+ A+E+ KPV
Sbjct: 62 GQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQF-RKLKAHADEYVAKPV 110
>pdb|2JK1|A Chain A, Crystal Structure Of The Wild-Type Hupr Receiver Domain
pdb|2VUI|B Chain B, Crystal Structure Of The Hupr Receiver Domain In
Inhibitory Phospho-State
Length = 139
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
V +II D MPG TG D L +++E + + ++I + S + + G +F KP
Sbjct: 45 VQVIICDQRMPGRTGVDFLTEVRERWP-ETVRIIITGYTDSASMMAAINDAGIHQFLTKP 103
Query: 124 VQ 125
Sbjct: 104 WH 105
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 61/116 (52%), Gaps = 18/116 (15%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+L VDD +I+ + Y+V +G +AL EQ ++ Q ++II
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAL---------EQFEAE--QPDIIIL 51
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRC--LEEGAEEFFLKP 123
+P + G ++ + I++++S +P++++S+++ S ++ LE GA+++ KP
Sbjct: 52 XLMLPEIDGLEVAKTIRKTSS---VPILMLSAKD--SEFDKVIGLELGADDYVTKP 102
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 37/146 (25%)
Query: 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNL 66
S+ +L V+D+ I+ + + ++K + +D N +E + +N +L
Sbjct: 7 SKPKILLVEDNKINIMVAKSMMKQLGH---TMDIANNGVEAITAINSS--------SYDL 55
Query: 67 IITDYCMP---GMTGYDLLRKIKESASLKD-----------------------IPVVIMS 100
++ D CMP G+ L+R +E+ + +P++ M+
Sbjct: 56 VLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMT 115
Query: 101 SENIPSRINRCLEEGAEEFFLKPVQL 126
+ + C G + F KPV L
Sbjct: 116 ANTLAESSEECYANGMDSFISKPVTL 141
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 22/126 (17%)
Query: 4 VTDSQFHVLAVDDSIIDRKLIERL------LKTSSYQVTAVDSGNKALEFLGLLNEDEQT 57
+TD VL VDDS R +++ + +K + +++ KA+E
Sbjct: 21 MTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE----------- 69
Query: 58 NSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAE 117
++ ++I D MP + G + L+ I + A + I V ++ E I L GA
Sbjct: 70 ----LKPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIE-ALRNGAV 124
Query: 118 EFFLKP 123
+F KP
Sbjct: 125 DFITKP 130
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 50 LLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRIN 109
L ED + + V ++ D +P +GY++ R IKE+ + V++++ + +
Sbjct: 32 LTGEDFLNDEEAFHV--VVLDVXLPDYSGYEICRXIKETRP--ETWVILLTLLSDDESVL 87
Query: 110 RCLEEGAEEFFLKP----VQLADVNKLKPHLMKGI 140
+ E GA+++ KP + LA V + KG+
Sbjct: 88 KGFEAGADDYVTKPFNPEILLARVKRFLEREKKGL 122
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVN 65
D H+ VDD RK + +L + + V S L F + ++
Sbjct: 3 DYTVHI--VDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAF-----------APDVRNG 49
Query: 66 LIITDYCMPGMTGYDLLRKIKESASLK-DIP-VVIMSSENIPSRINRCLEEGAEEFFLKP 123
+++T MP M+G +LLR + + LK +IP +VI ++P + ++ GA +F KP
Sbjct: 50 VLVTXLRMPDMSGVELLRNLGD---LKINIPSIVITGHGDVPMAV-EAMKAGAVDFIEKP 105
Query: 124 VQ 125
+
Sbjct: 106 FE 107
>pdb|2NT3|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs (Y102a Mutant)
Length = 127
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 75 GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124
G GY + K+K+ LK++P+VI+ + + ++ +R L+ A+E KPV
Sbjct: 62 GQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQ-HRKLKAHADEAVAKPV 110
>pdb|3NHM|A Chain A, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
pdb|3NHM|B Chain B, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
Length = 133
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
VL V++S R+ + RLL + + T G L+ + +++I+D
Sbjct: 7 VLIVENSWTXRETL-RLLLSGEFDCTTAADGASGLQ-----------QALAHPPDVLISD 54
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125
G GY L + +LK IPV+ +S P + + + +KPV+
Sbjct: 55 VNXDGXDGYALCGHFRSEPTLKHIPVIFVSG-YAPRTEGPADQPVPDAYLVKPVK 108
>pdb|2VUH|B Chain B, Crystal Structure Of The D55e Mutant Of The Hupr Receiver
Domain
Length = 139
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
V +II + MPG TG D L +++E + + ++I + S + + G +F KP
Sbjct: 45 VQVIICEQRMPGRTGVDFLTEVRERWP-ETVRIIITGYTDSASMMAAINDAGIHQFLTKP 103
Query: 124 VQ 125
Sbjct: 104 WH 105
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123
++++ D +P +GY++ R IKE+ + V++++ + + + E GA+++ KP
Sbjct: 45 HVVVLDVXLPDYSGYEICRXIKETRP--ETWVILLTLLSDDESVLKGFEAGADDYVTKP 101
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+VL ++D + R L+E L +V + + G +A + LL+E N+++
Sbjct: 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYK---LLSEK--------HFNVVLL 50
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
D +P + G ++L+ IKE + ++ +VI I + + ++ GA +F KP L ++
Sbjct: 51 DLLLPDVNGLEILKWIKERSPETEV-IVITGHGTIKTAVE-AMKMGAYDFLTKPCMLEEI 108
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L V+D R+ + ++ +V + G + GL D +IITD
Sbjct: 10 ILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPD-----------VIITD 58
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125
P + G + L +IK + + V+ SE + +E G F KP++
Sbjct: 59 IRXPKLGGLEXLDRIKAGGAKPYVIVISAFSEX--KYFIKAIELGVHLFLPKPIE 111
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
VL V+D+ + R ++ ++ + +QV + +A +L N + ++ I D
Sbjct: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYL---------NEHI--PDIAIVD 51
Query: 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADV 129
+P G L+R+ + + +P++++++ L GA+++ KP + +V
Sbjct: 52 LGLPDEDGLSLIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEV 108
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
NARL
Length = 215
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 72 CMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNK 131
MPGM G + L K++E + I V+ S N + L+ GA+ + LK ++ D+ K
Sbjct: 60 NMPGMNGLETLDKLREKSLSGRI--VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLK 117
>pdb|3LUA|A Chain A, Crystal Structure Of A Signal Receiver Domain Of Two
Component Signal Transduction (Histidine Kinase) From
Clostridium Thermocellum
Length = 140
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 63 QVNLIITDYCMP-GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121
+ LII D P G ++L I+ ++ + PV+I + + P + L+ ++ L
Sbjct: 50 SITLIIXDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYIL 109
Query: 122 KP 123
KP
Sbjct: 110 KP 111
>pdb|2RDM|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
Length = 132
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70
+L DD I E L + + VTAV SG KA+E L ++ ++TD
Sbjct: 8 ILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEXL----------KSGAAIDGVVTD 57
Query: 71 --YCMPGMTGYDLLRKIKE 87
+C P G+ + R +E
Sbjct: 58 IRFCQP-PDGWQVARVARE 75
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69
+L VDD R+L++ L+ Y++ ++G +AL+ N D L+I
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYD-----------LVIL 51
Query: 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSS 101
D MPG++G ++ +I++ KD ++++++
Sbjct: 52 DIEMPGISGLEVAGEIRKKK--KDAKIILLTA 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,524,598
Number of Sequences: 62578
Number of extensions: 150662
Number of successful extensions: 622
Number of sequences better than 100.0: 145
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 147
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)