Query 046192
Match_columns 187
No_of_seqs 149 out of 1530
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 09:34:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2197 CitB Response regulato 99.9 4.4E-27 9.5E-32 177.4 11.9 165 9-186 1-169 (211)
2 COG4566 TtrR Response regulato 99.9 4E-27 8.6E-32 169.3 10.8 160 8-186 4-163 (202)
3 COG0745 OmpR Response regulato 99.9 2.1E-25 4.6E-30 169.9 13.1 120 9-141 1-120 (229)
4 PRK10840 transcriptional regul 99.9 1.2E-23 2.6E-28 159.2 12.0 164 8-186 3-171 (216)
5 COG2204 AtoC Response regulato 99.9 3.4E-23 7.4E-28 169.6 15.2 166 8-186 4-179 (464)
6 COG4753 Response regulator con 99.9 8E-23 1.7E-27 167.3 14.2 121 9-142 2-125 (475)
7 PRK10046 dpiA two-component re 99.9 1.8E-21 3.9E-26 148.3 14.5 165 7-186 3-183 (225)
8 PF00072 Response_reg: Respons 99.9 7.5E-21 1.6E-25 129.1 15.2 111 11-134 1-112 (112)
9 PRK09483 response regulator; P 99.9 1.6E-21 3.5E-26 146.7 12.1 165 9-186 2-169 (217)
10 COG4565 CitB Response regulato 99.9 5.3E-21 1.1E-25 140.3 14.3 120 9-141 1-122 (224)
11 PRK11475 DNA-binding transcrip 99.9 2.9E-21 6.3E-26 145.2 9.5 147 20-186 2-155 (207)
12 PRK10100 DNA-binding transcrip 99.9 4E-21 8.8E-26 145.4 10.1 164 5-186 7-176 (216)
13 COG3437 Response regulator con 99.8 2.8E-20 6E-25 146.1 13.2 125 2-137 8-133 (360)
14 PRK15411 rcsA colanic acid cap 99.8 2.8E-20 6.1E-25 140.1 12.7 151 10-186 2-158 (207)
15 PRK09958 DNA-binding transcrip 99.8 2.7E-20 5.8E-25 138.8 12.5 162 10-186 2-164 (204)
16 PRK09935 transcriptional regul 99.8 3.6E-20 7.8E-25 138.3 12.4 166 8-186 3-170 (210)
17 PRK11083 DNA-binding response 99.8 5.7E-20 1.2E-24 138.9 13.5 165 9-186 4-179 (228)
18 PLN03029 type-a response regul 99.8 4.6E-19 9.9E-24 134.9 17.1 139 1-139 1-148 (222)
19 TIGR02154 PhoB phosphate regul 99.8 1.1E-19 2.4E-24 137.0 13.3 167 9-186 3-179 (226)
20 PRK10336 DNA-binding transcrip 99.8 1.4E-19 3.1E-24 136.1 13.5 165 9-186 1-174 (219)
21 PRK10643 DNA-binding transcrip 99.8 5.4E-19 1.2E-23 133.1 14.2 164 10-186 2-173 (222)
22 TIGR03787 marine_sort_RR prote 99.8 5.8E-19 1.3E-23 133.7 14.4 164 10-186 2-181 (227)
23 PRK10651 transcriptional regul 99.8 2.9E-19 6.2E-24 133.7 12.4 170 4-186 2-176 (216)
24 PRK09836 DNA-binding transcrip 99.8 3.9E-19 8.5E-24 134.8 13.3 157 10-179 2-164 (227)
25 CHL00148 orf27 Ycf27; Reviewed 99.8 4.1E-19 8.9E-24 135.5 13.3 169 4-186 2-186 (240)
26 PRK10430 DNA-binding transcrip 99.8 3.2E-19 6.9E-24 137.1 12.0 118 9-137 2-121 (239)
27 PRK10360 DNA-binding transcrip 99.8 3.3E-19 7.2E-24 132.1 11.1 155 9-186 2-158 (196)
28 PRK10161 transcriptional regul 99.8 9E-19 2E-23 133.0 13.4 121 9-140 3-123 (229)
29 PRK10403 transcriptional regul 99.8 1.2E-18 2.5E-23 130.2 12.6 169 5-186 3-174 (215)
30 COG4567 Response regulator con 99.8 2.6E-18 5.7E-23 119.4 13.0 120 5-137 6-125 (182)
31 TIGR01387 cztR_silR_copR heavy 99.8 1.6E-18 3.5E-23 130.1 12.1 157 11-180 1-162 (218)
32 COG3706 PleD Response regulato 99.8 5E-18 1.1E-22 138.4 15.2 125 7-142 131-255 (435)
33 PRK10955 DNA-binding transcrip 99.8 7.7E-18 1.7E-22 127.8 15.0 160 9-183 2-174 (232)
34 COG0784 CheY FOG: CheY-like re 99.8 2.3E-17 5.1E-22 114.6 16.0 120 6-137 3-124 (130)
35 PRK10816 DNA-binding transcrip 99.8 2.4E-17 5.2E-22 124.6 16.2 118 10-140 2-119 (223)
36 PRK09468 ompR osmolarity respo 99.8 3.4E-17 7.3E-22 125.2 16.6 123 5-140 2-124 (239)
37 PRK15369 two component system 99.8 5.7E-18 1.2E-22 125.7 12.0 166 8-186 3-170 (211)
38 PRK11517 transcriptional regul 99.8 2.1E-17 4.5E-22 124.7 14.9 158 10-181 2-163 (223)
39 PRK10529 DNA-binding transcrip 99.8 4E-17 8.7E-22 123.5 16.2 118 9-140 2-119 (225)
40 PRK10710 DNA-binding transcrip 99.8 2E-17 4.2E-22 126.2 13.5 165 8-186 10-185 (240)
41 PRK11173 two-component respons 99.8 6.4E-17 1.4E-21 123.6 16.2 118 9-140 4-121 (237)
42 PRK09390 fixJ response regulat 99.8 1.9E-17 4.2E-22 122.2 12.4 160 8-186 3-162 (202)
43 PRK10766 DNA-binding transcrip 99.7 1.4E-16 3.1E-21 120.1 16.3 117 9-139 3-119 (221)
44 PRK15479 transcriptional regul 99.7 5.5E-17 1.2E-21 122.0 13.8 159 10-181 2-164 (221)
45 PRK10701 DNA-binding transcrip 99.7 2.5E-16 5.4E-21 120.5 16.2 118 9-140 2-119 (240)
46 COG3947 Response regulator con 99.7 2.9E-17 6.2E-22 125.8 10.7 117 9-140 1-117 (361)
47 PRK15115 response regulator Gl 99.7 7.4E-17 1.6E-21 134.3 14.2 122 5-139 2-123 (444)
48 PRK13856 two-component respons 99.7 3E-16 6.4E-21 120.4 16.0 118 9-140 2-120 (241)
49 PRK11107 hybrid sensory histid 99.7 2.4E-16 5.1E-21 141.4 16.3 122 8-140 667-788 (919)
50 PRK10841 hybrid sensory kinase 99.7 2.7E-16 5.9E-21 141.0 16.6 120 7-139 800-919 (924)
51 PRK10365 transcriptional regul 99.7 2.7E-16 5.9E-21 130.8 15.5 122 5-139 2-123 (441)
52 PRK10923 glnG nitrogen regulat 99.7 2.6E-16 5.6E-21 132.0 15.3 119 8-139 3-121 (469)
53 TIGR02875 spore_0_A sporulatio 99.7 7.2E-16 1.6E-20 119.9 16.0 121 8-139 2-124 (262)
54 PRK11466 hybrid sensory histid 99.7 5.5E-16 1.2E-20 139.1 16.1 121 8-140 681-801 (914)
55 PRK14084 two-component respons 99.7 1.4E-15 3E-20 117.1 15.2 117 9-140 1-119 (246)
56 PRK15347 two component system 99.7 1E-15 2.3E-20 137.3 16.3 120 8-138 690-811 (921)
57 KOG0519 Sensory transduction h 99.7 6.1E-16 1.3E-20 136.2 13.9 119 8-137 666-784 (786)
58 PRK11361 acetoacetate metaboli 99.7 1.8E-15 3.8E-20 126.5 16.1 119 8-139 4-122 (457)
59 TIGR02956 TMAO_torS TMAO reduc 99.7 1.2E-15 2.6E-20 137.6 15.8 121 8-139 702-823 (968)
60 PRK09581 pleD response regulat 99.7 8E-16 1.7E-20 127.6 13.3 120 7-138 154-273 (457)
61 PRK11091 aerobic respiration c 99.7 2.3E-15 5E-20 133.2 15.9 122 7-140 524-646 (779)
62 TIGR02915 PEP_resp_reg putativ 99.7 3.5E-15 7.5E-20 124.4 14.9 114 11-139 1-119 (445)
63 PRK11697 putative two-componen 99.7 5.8E-15 1.3E-19 112.9 14.6 115 9-139 2-118 (238)
64 PRK09959 hybrid sensory histid 99.7 4.4E-15 9.5E-20 136.7 16.3 118 8-138 958-1075(1197)
65 TIGR01818 ntrC nitrogen regula 99.6 5E-15 1.1E-19 124.0 15.2 116 11-139 1-116 (463)
66 PRK10610 chemotaxis regulatory 99.6 4.7E-14 1E-18 95.9 16.6 124 5-139 2-126 (129)
67 PRK09581 pleD response regulat 99.6 1.7E-14 3.6E-19 119.7 16.4 120 9-139 3-122 (457)
68 PRK13435 response regulator; P 99.6 2.8E-14 6E-19 101.2 14.5 117 8-141 5-123 (145)
69 COG3707 AmiR Response regulato 99.6 1.9E-15 4E-20 109.8 7.8 125 5-143 2-127 (194)
70 PRK13558 bacterio-opsin activa 99.6 1.5E-14 3.2E-19 126.1 14.8 121 6-139 5-127 (665)
71 PRK12555 chemotaxis-specific m 99.6 5.9E-14 1.3E-18 113.2 15.0 116 9-138 1-129 (337)
72 PRK00742 chemotaxis-specific m 99.6 1.9E-13 4.1E-18 110.9 15.7 104 8-125 3-110 (354)
73 COG2201 CheB Chemotaxis respon 99.5 9.9E-13 2.2E-17 104.6 12.4 103 9-125 2-108 (350)
74 PRK13837 two-component VirA-li 99.5 1.6E-12 3.4E-17 116.1 15.2 118 8-139 697-814 (828)
75 PRK09191 two-component respons 99.5 3.9E-12 8.4E-17 98.6 15.3 116 8-139 137-254 (261)
76 cd00156 REC Signal receiver do 99.5 5E-12 1.1E-16 82.5 13.2 112 12-136 1-112 (113)
77 PRK13557 histidine kinase; Pro 99.4 6E-12 1.3E-16 106.5 14.9 120 8-139 415-535 (540)
78 PRK10693 response regulator of 99.4 8.7E-12 1.9E-16 99.2 11.8 89 37-138 2-91 (303)
79 COG3279 LytT Response regulato 99.3 6.2E-11 1.3E-15 91.4 11.2 115 9-138 2-118 (244)
80 PRK15029 arginine decarboxylas 99.3 1E-10 2.2E-15 102.2 12.9 115 10-137 2-131 (755)
81 PRK11107 hybrid sensory histid 98.7 3.6E-07 7.8E-12 82.5 14.0 115 8-137 536-650 (919)
82 PF06490 FleQ: Flagellar regul 98.4 4.3E-06 9.4E-11 56.5 9.9 107 10-137 1-108 (109)
83 COG3706 PleD Response regulato 98.2 3.1E-06 6.8E-11 69.9 6.0 93 33-140 13-105 (435)
84 smart00448 REC cheY-homologous 97.9 0.00017 3.8E-09 39.7 7.6 53 10-73 2-54 (55)
85 cd02071 MM_CoA_mut_B12_BD meth 97.9 0.0012 2.5E-08 45.5 13.0 107 15-134 10-121 (122)
86 PF03709 OKR_DC_1_N: Orn/Lys/A 97.7 0.00041 8.8E-09 47.3 8.5 104 21-137 6-112 (115)
87 PRK02261 methylaspartate mutas 97.7 0.0059 1.3E-07 43.0 14.2 119 8-138 3-135 (137)
88 TIGR00640 acid_CoA_mut_C methy 97.4 0.0096 2.1E-07 41.6 12.7 110 15-137 13-127 (132)
89 cd02067 B12-binding B12 bindin 97.2 0.012 2.7E-07 40.0 11.1 95 15-122 10-109 (119)
90 TIGR01501 MthylAspMutase methy 96.6 0.15 3.1E-06 35.8 12.8 106 19-137 16-132 (134)
91 TIGR03815 CpaE_hom_Actino heli 96.5 0.024 5.2E-07 45.5 8.9 66 64-137 20-86 (322)
92 PRK15399 lysine decarboxylase 96.5 0.062 1.3E-06 47.7 11.9 114 10-138 2-122 (713)
93 cd02070 corrinoid_protein_B12- 96.4 0.099 2.1E-06 39.2 11.4 102 8-123 82-192 (201)
94 COG2185 Sbm Methylmalonyl-CoA 96.3 0.18 3.9E-06 35.5 11.4 117 7-136 11-136 (143)
95 PRK15400 lysine decarboxylase 96.3 0.084 1.8E-06 46.9 11.5 98 10-122 2-105 (714)
96 cd02069 methionine_synthase_B1 96.1 0.12 2.6E-06 39.2 10.5 104 7-123 87-202 (213)
97 PRK10618 phosphotransfer inter 95.9 0.011 2.4E-07 53.9 4.8 48 8-72 689-736 (894)
98 PRK15320 transcriptional activ 95.9 0.028 6.1E-07 41.7 5.8 156 10-186 3-185 (251)
99 cd02072 Glm_B12_BD B12 binding 95.5 0.52 1.1E-05 32.7 12.5 104 17-133 12-126 (128)
100 PF02310 B12-binding: B12 bind 95.4 0.41 8.8E-06 32.3 9.9 94 16-123 12-112 (121)
101 TIGR02370 pyl_corrinoid methyl 95.2 0.35 7.7E-06 36.1 9.9 94 15-122 95-193 (197)
102 COG4999 Uncharacterized domain 95.1 0.18 3.8E-06 34.4 7.0 108 8-132 11-120 (140)
103 PF07688 KaiA: KaiA domain; I 95.0 0.33 7.1E-06 37.5 9.1 115 9-140 1-120 (283)
104 PRK10558 alpha-dehydro-beta-de 94.9 0.52 1.1E-05 36.7 10.4 100 22-133 8-110 (256)
105 cd02068 radical_SAM_B12_BD B12 94.7 0.88 1.9E-05 31.2 10.2 109 18-139 2-113 (127)
106 cd04728 ThiG Thiazole synthase 94.6 1 2.2E-05 34.8 11.0 112 9-139 94-226 (248)
107 PRK00208 thiG thiazole synthas 94.5 1.1 2.4E-05 34.7 10.9 112 9-139 94-226 (250)
108 PRK10128 2-keto-3-deoxy-L-rham 94.4 0.83 1.8E-05 35.9 10.5 94 23-128 8-103 (267)
109 PF10087 DUF2325: Uncharacteri 94.3 0.9 2E-05 29.7 9.1 90 10-112 1-93 (97)
110 PRK09426 methylmalonyl-CoA mut 94.3 1.1 2.4E-05 40.1 12.1 118 8-138 582-708 (714)
111 PRK05718 keto-hydroxyglutarate 94.2 1.7 3.7E-05 32.9 11.4 97 24-134 8-105 (212)
112 TIGR03239 GarL 2-dehydro-3-deo 94.2 1.2 2.6E-05 34.6 10.8 93 24-128 3-97 (249)
113 TIGR02311 HpaI 2,4-dihydroxyhe 93.2 1.9 4.1E-05 33.5 10.4 102 24-137 3-107 (249)
114 PRK05749 3-deoxy-D-manno-octul 93.2 2.3 5E-05 35.3 11.7 112 8-139 262-388 (425)
115 PRK06552 keto-hydroxyglutarate 92.8 3.3 7.3E-05 31.3 11.0 95 26-133 8-105 (213)
116 TIGR01182 eda Entner-Doudoroff 92.3 3.1 6.6E-05 31.3 10.1 61 69-133 37-97 (204)
117 PRK15201 fimbriae regulatory p 92.3 0.078 1.7E-06 38.8 1.5 86 93-186 69-154 (198)
118 COG0512 PabA Anthranilate/para 91.6 1.2 2.7E-05 32.9 7.1 89 9-112 2-91 (191)
119 PRK09140 2-dehydro-3-deoxy-6-p 91.3 5 0.00011 30.2 10.4 96 26-134 5-101 (206)
120 PF05690 ThiG: Thiazole biosyn 91.2 5.1 0.00011 30.8 10.2 100 25-139 116-226 (247)
121 TIGR02026 BchE magnesium-proto 91.1 5.1 0.00011 34.4 11.5 110 17-140 21-139 (497)
122 PF02254 TrkA_N: TrkA-N domain 91.1 3.2 6.9E-05 27.6 10.8 93 9-121 22-115 (116)
123 PLN02871 UDP-sulfoquinovose:DA 91.1 4 8.6E-05 34.5 10.8 108 8-139 290-400 (465)
124 COG3967 DltE Short-chain dehyd 90.3 3.5 7.5E-05 31.3 8.4 81 8-101 5-86 (245)
125 PRK06015 keto-hydroxyglutarate 89.7 6.2 0.00013 29.6 9.5 61 69-133 33-93 (201)
126 PRK03659 glutathione-regulated 89.4 5.7 0.00012 34.9 10.6 55 63-122 464-518 (601)
127 PF01081 Aldolase: KDPG and KH 89.0 4.4 9.6E-05 30.3 8.3 64 66-133 34-97 (196)
128 COG2022 ThiG Uncharacterized e 88.8 8.9 0.00019 29.5 9.7 100 25-139 123-233 (262)
129 PF01408 GFO_IDH_MocA: Oxidore 88.7 5.3 0.00012 26.6 9.8 106 9-138 1-111 (120)
130 PRK01130 N-acetylmannosamine-6 88.6 8.7 0.00019 29.0 10.9 85 22-121 108-201 (221)
131 TIGR03088 stp2 sugar transfera 88.3 7.3 0.00016 31.4 10.0 108 8-139 229-338 (374)
132 PRK10669 putative cation:proto 88.0 12 0.00026 32.5 11.6 55 63-123 481-535 (558)
133 PRK15484 lipopolysaccharide 1, 87.9 14 0.0003 30.3 12.8 110 8-139 224-344 (380)
134 PRK07114 keto-hydroxyglutarate 87.8 10 0.00023 28.9 11.0 98 24-133 8-108 (222)
135 KOG4175 Tryptophan synthase al 87.3 2.5 5.5E-05 31.7 5.9 45 93-137 95-145 (268)
136 cd03823 GT1_ExpE7_like This fa 87.0 13 0.00028 29.1 10.6 67 64-139 263-329 (359)
137 PRK03562 glutathione-regulated 86.9 8.5 0.00018 34.0 10.1 92 8-119 423-515 (621)
138 PRK12704 phosphodiesterase; Pr 86.9 1.4 3E-05 38.1 5.1 45 94-138 250-296 (520)
139 CHL00162 thiG thiamin biosynth 86.7 13 0.00029 29.0 12.5 102 24-140 129-241 (267)
140 PRK13111 trpA tryptophan synth 86.7 3.2 7E-05 32.4 6.7 59 78-138 76-140 (258)
141 TIGR00262 trpA tryptophan synt 86.4 3.9 8.4E-05 31.9 7.0 60 77-138 73-138 (256)
142 smart00052 EAL Putative diguan 86.1 6.4 0.00014 29.5 8.1 92 23-126 137-239 (241)
143 TIGR03151 enACPred_II putative 85.9 15 0.00033 29.4 10.3 83 24-121 101-189 (307)
144 COG3836 HpcH 2,4-dihydroxyhept 85.9 14 0.00031 28.5 10.6 94 23-128 7-102 (255)
145 PRK15427 colanic acid biosynth 85.8 19 0.00041 29.9 12.6 108 8-138 253-369 (406)
146 cd04724 Tryptophan_synthase_al 85.8 4.8 0.0001 31.0 7.2 59 77-138 63-127 (242)
147 cd01948 EAL EAL domain. This d 85.5 5.8 0.00012 29.7 7.5 91 24-126 137-238 (240)
148 PRK14098 glycogen synthase; Pr 85.5 17 0.00038 31.1 11.1 112 8-138 336-450 (489)
149 PRK11359 cyclic-di-GMP phospho 84.7 14 0.00031 33.1 10.7 101 24-136 683-794 (799)
150 PRK03958 tRNA 2'-O-methylase; 84.7 14 0.00029 27.2 9.5 78 9-101 32-111 (176)
151 cd04962 GT1_like_5 This family 84.5 15 0.00033 29.3 10.0 107 9-139 228-336 (371)
152 PRK10060 RNase II stability mo 84.2 16 0.00035 32.5 10.7 102 22-135 544-656 (663)
153 PRK00043 thiE thiamine-phospha 84.2 15 0.00032 27.3 12.0 56 63-121 124-187 (212)
154 TIGR00566 trpG_papA glutamine 84.1 5.1 0.00011 29.5 6.5 77 11-101 2-80 (188)
155 PRK05458 guanosine 5'-monophos 83.9 4.4 9.5E-05 32.8 6.4 54 64-120 112-166 (326)
156 PRK14329 (dimethylallyl)adenos 83.5 14 0.0003 31.5 9.6 98 17-139 36-141 (467)
157 TIGR01305 GMP_reduct_1 guanosi 82.8 20 0.00044 29.2 9.6 56 63-121 121-177 (343)
158 PRK06774 para-aminobenzoate sy 82.5 3.7 8E-05 30.3 5.2 85 11-111 2-88 (191)
159 PF01729 QRPTase_C: Quinolinat 82.4 13 0.00029 27.0 7.9 95 10-120 52-153 (169)
160 cd03813 GT1_like_3 This family 82.3 28 0.00061 29.5 11.1 108 8-139 324-442 (475)
161 PRK05096 guanosine 5'-monophos 82.2 11 0.00024 30.7 7.9 54 63-119 122-176 (346)
162 PF01993 MTD: methylene-5,6,7, 82.2 3.9 8.5E-05 31.5 5.1 60 62-125 58-117 (276)
163 PRK09490 metH B12-dependent me 82.2 18 0.0004 34.7 10.4 102 8-123 751-865 (1229)
164 PLN02335 anthranilate synthase 82.1 5.8 0.00013 30.1 6.2 82 6-101 16-99 (222)
165 cd04723 HisA_HisF Phosphoribos 81.8 15 0.00032 28.1 8.4 53 66-121 162-217 (233)
166 PRK06843 inosine 5-monophospha 81.7 6.4 0.00014 32.9 6.7 55 63-120 165-220 (404)
167 PRK00994 F420-dependent methyl 81.5 23 0.00049 27.4 9.2 60 62-125 59-118 (277)
168 cd00452 KDPG_aldolase KDPG and 81.5 19 0.00041 26.5 9.6 79 26-121 91-170 (190)
169 TIGR02082 metH 5-methyltetrahy 81.5 25 0.00053 33.7 11.0 104 8-124 732-847 (1178)
170 TIGR01579 MiaB-like-C MiaB-lik 81.1 26 0.00057 29.2 10.3 95 18-137 10-108 (414)
171 COG2200 Rtn c-di-GMP phosphodi 80.7 24 0.00053 27.3 10.1 114 8-133 121-249 (256)
172 cd02065 B12-binding_like B12 b 80.7 14 0.00031 24.6 8.5 74 15-100 10-87 (125)
173 PRK09922 UDP-D-galactose:(gluc 80.6 28 0.00061 28.0 10.5 68 64-140 258-325 (359)
174 PRK15490 Vi polysaccharide bio 80.6 40 0.00086 29.7 12.6 102 8-133 429-532 (578)
175 PRK13125 trpA tryptophan synth 80.5 24 0.00052 27.1 11.4 89 20-122 117-214 (244)
176 PRK04302 triosephosphate isome 80.3 23 0.0005 26.8 12.1 41 80-122 162-202 (223)
177 PRK05670 anthranilate synthase 79.9 7.4 0.00016 28.6 6.0 30 11-40 2-31 (189)
178 PF03602 Cons_hypoth95: Conser 79.8 21 0.00046 26.2 8.4 71 9-88 66-140 (183)
179 PRK07428 nicotinate-nucleotide 79.7 19 0.00041 28.7 8.5 94 10-119 168-268 (288)
180 cd03804 GT1_wbaZ_like This fam 79.4 26 0.00056 27.9 9.5 105 9-139 222-326 (351)
181 TIGR01306 GMP_reduct_2 guanosi 79.4 32 0.00069 27.9 11.3 55 64-121 109-164 (321)
182 cd03819 GT1_WavL_like This fam 79.3 29 0.00063 27.3 12.0 109 8-138 216-329 (355)
183 COG1927 Mtd Coenzyme F420-depe 79.3 25 0.00055 26.7 9.4 57 63-123 60-116 (277)
184 PF00196 GerE: Bacterial regul 79.2 0.13 2.8E-06 30.2 -3.0 23 164-186 2-24 (58)
185 TIGR01334 modD putative molybd 78.9 18 0.00039 28.6 8.1 94 10-119 158-260 (277)
186 PRK11840 bifunctional sulfur c 78.7 34 0.00073 27.8 10.8 117 9-140 168-301 (326)
187 TIGR01303 IMP_DH_rel_1 IMP deh 78.7 13 0.00028 31.9 7.7 55 62-119 236-291 (475)
188 PF03060 NMO: Nitronate monoox 78.4 34 0.00074 27.7 10.2 82 24-120 128-217 (330)
189 PRK13719 conjugal transfer tra 78.0 0.27 5.8E-06 37.2 -2.2 23 164-186 142-164 (217)
190 PRK06895 putative anthranilate 77.8 13 0.00029 27.3 6.8 31 9-39 2-32 (190)
191 PLN02591 tryptophan synthase 77.8 11 0.00024 29.3 6.5 59 77-138 65-129 (250)
192 PF03328 HpcH_HpaI: HpcH/HpaI 77.7 28 0.0006 26.2 10.2 87 38-136 7-106 (221)
193 PRK05637 anthranilate synthase 77.7 16 0.00035 27.5 7.3 32 9-40 2-33 (208)
194 PF01729 QRPTase_C: Quinolinat 77.4 16 0.00034 26.6 6.9 58 77-138 65-123 (169)
195 TIGR01302 IMP_dehydrog inosine 77.4 9.5 0.00021 32.3 6.6 54 63-119 236-290 (450)
196 cd04949 GT1_gtfA_like This fam 77.0 37 0.00079 27.3 10.6 67 65-140 280-346 (372)
197 PRK08007 para-aminobenzoate sy 76.9 7.2 0.00016 28.7 5.1 77 11-101 2-80 (187)
198 PRK07896 nicotinate-nucleotide 76.6 30 0.00065 27.6 8.8 94 10-119 172-271 (289)
199 PRK00278 trpC indole-3-glycero 76.5 34 0.00074 26.7 12.9 91 18-121 146-239 (260)
200 cd03795 GT1_like_4 This family 76.3 35 0.00077 26.8 12.2 111 8-140 218-333 (357)
201 PRK14326 (dimethylallyl)adenos 76.3 50 0.0011 28.5 10.8 99 16-139 25-131 (502)
202 PF03102 NeuB: NeuB family; I 76.1 29 0.00063 26.8 8.4 103 20-139 57-170 (241)
203 cd04729 NanE N-acetylmannosami 76.0 31 0.00067 25.9 10.0 84 24-122 114-206 (219)
204 PLN02274 inosine-5'-monophosph 75.9 17 0.00037 31.3 7.8 56 63-121 260-316 (505)
205 cd03820 GT1_amsD_like This fam 75.8 34 0.00073 26.3 11.8 109 8-139 209-319 (348)
206 COG1908 FrhD Coenzyme F420-red 75.8 8.4 0.00018 26.4 4.6 56 67-123 4-61 (132)
207 PRK14331 (dimethylallyl)adenos 75.7 45 0.00097 28.1 10.2 98 17-138 13-117 (437)
208 PF00563 EAL: EAL domain; Int 75.6 4.6 0.0001 30.2 3.9 84 22-118 138-227 (236)
209 PRK07649 para-aminobenzoate/an 75.4 5.3 0.00011 29.7 4.1 77 11-101 2-80 (195)
210 PRK05703 flhF flagellar biosyn 75.4 48 0.001 27.9 11.2 103 8-121 251-364 (424)
211 PRK04148 hypothetical protein; 75.2 4.8 0.0001 28.2 3.6 56 9-77 18-73 (134)
212 PRK00748 1-(5-phosphoribosyl)- 75.0 28 0.0006 26.3 8.2 53 66-121 163-219 (233)
213 cd05212 NAD_bind_m-THF_DH_Cycl 74.5 22 0.00047 25.0 6.8 56 7-75 27-83 (140)
214 TIGR00642 mmCoA_mut_beta methy 74.4 58 0.0013 29.0 10.7 96 21-133 512-612 (619)
215 COG1737 RpiR Transcriptional r 74.4 40 0.00088 26.5 9.6 85 9-108 133-219 (281)
216 COG0159 TrpA Tryptophan syntha 74.0 16 0.00035 28.7 6.5 52 77-130 80-137 (265)
217 PF00534 Glycos_transf_1: Glyc 73.8 28 0.00061 24.4 10.0 110 7-140 46-159 (172)
218 CHL00200 trpA tryptophan synth 73.4 16 0.00034 28.7 6.4 58 78-138 79-142 (263)
219 PF04321 RmlD_sub_bind: RmlD s 73.3 12 0.00026 29.4 5.9 54 9-73 1-61 (286)
220 cd03818 GT1_ExpC_like This fam 72.9 50 0.0011 26.9 10.8 66 64-139 301-366 (396)
221 cd04951 GT1_WbdM_like This fam 72.3 46 0.00099 26.2 9.7 105 8-138 219-325 (360)
222 cd00381 IMPDH IMPDH: The catal 71.9 27 0.00058 28.3 7.6 56 63-121 106-162 (325)
223 PRK12376 putative translaldola 71.8 44 0.00095 25.8 8.7 92 25-123 105-200 (236)
224 PRK12724 flagellar biosynthesi 71.8 61 0.0013 27.4 10.8 101 9-122 253-368 (432)
225 PRK05567 inosine 5'-monophosph 71.6 21 0.00047 30.5 7.4 55 63-120 240-295 (486)
226 PRK13587 1-(5-phosphoribosyl)- 71.5 42 0.00091 25.7 8.3 54 65-121 164-220 (234)
227 cd03812 GT1_CapH_like This fam 71.3 49 0.0011 26.1 10.0 109 8-141 223-333 (358)
228 COG5012 Predicted cobalamin bi 71.2 32 0.0007 26.3 7.4 90 20-123 120-214 (227)
229 cd04730 NPD_like 2-Nitropropan 71.1 42 0.00091 25.3 11.5 56 64-122 123-185 (236)
230 TIGR00343 pyridoxal 5'-phospha 71.0 9.7 0.00021 30.2 4.7 60 77-139 184-250 (287)
231 PF00977 His_biosynth: Histidi 70.9 30 0.00064 26.4 7.4 53 66-121 164-219 (229)
232 cd03801 GT1_YqgM_like This fam 70.9 46 0.001 25.6 11.5 67 64-140 276-342 (374)
233 PRK11829 biofilm formation reg 70.9 44 0.00096 29.5 9.4 104 21-133 541-652 (660)
234 TIGR02134 transald_staph trans 70.8 46 0.001 25.7 8.3 89 26-121 106-198 (236)
235 TIGR03449 mycothiol_MshA UDP-N 70.8 56 0.0012 26.6 11.5 108 9-139 253-368 (405)
236 COG0157 NadC Nicotinate-nucleo 70.7 30 0.00064 27.4 7.3 70 64-136 158-229 (280)
237 cd04727 pdxS PdxS is a subunit 70.5 12 0.00026 29.6 5.1 59 77-138 181-246 (283)
238 TIGR00693 thiE thiamine-phosph 70.5 39 0.00085 24.7 9.5 56 63-121 116-179 (196)
239 PRK01362 putative translaldola 70.4 45 0.00097 25.3 8.5 85 26-122 95-185 (214)
240 cd05014 SIS_Kpsf KpsF-like pro 70.1 30 0.00065 23.2 7.4 88 17-123 11-99 (128)
241 CHL00101 trpG anthranilate syn 69.9 19 0.00041 26.5 6.0 31 11-41 2-32 (190)
242 COG2771 CsgD DNA-binding HTH d 69.9 0.5 1.1E-05 27.9 -2.1 22 165-186 4-25 (65)
243 PRK13566 anthranilate synthase 69.9 20 0.00044 32.4 7.0 88 7-112 525-615 (720)
244 TIGR00734 hisAF_rel hisA/hisF 69.8 27 0.00059 26.5 6.9 54 65-121 156-212 (221)
245 PLN02775 Probable dihydrodipic 69.8 55 0.0012 26.1 11.9 107 6-128 9-140 (286)
246 PRK04128 1-(5-phosphoribosyl)- 69.7 34 0.00073 26.1 7.4 51 66-121 159-210 (228)
247 PRK11889 flhF flagellar biosyn 69.6 69 0.0015 27.1 11.3 106 8-122 269-385 (436)
248 PF01596 Methyltransf_3: O-met 69.5 42 0.00092 25.2 7.8 58 8-72 70-130 (205)
249 PRK13870 transcriptional regul 69.4 0.61 1.3E-05 35.8 -2.2 23 164-186 172-194 (234)
250 PRK08385 nicotinate-nucleotide 69.3 55 0.0012 25.9 10.7 95 10-119 156-256 (278)
251 PRK04180 pyridoxal biosynthesi 69.0 14 0.00029 29.4 5.1 61 77-140 190-257 (293)
252 COG3684 LacD Tagatose-1,6-bisp 69.0 15 0.00032 28.8 5.2 57 64-122 200-263 (306)
253 PF00478 IMPDH: IMP dehydrogen 68.8 21 0.00046 29.3 6.4 56 63-121 120-176 (352)
254 PRK13125 trpA tryptophan synth 68.6 52 0.0011 25.3 8.9 56 80-138 64-127 (244)
255 PF03808 Glyco_tran_WecB: Glyc 68.5 42 0.00091 24.3 8.9 78 7-100 47-133 (172)
256 PF07652 Flavi_DEAD: Flaviviru 68.5 36 0.00078 24.3 6.7 90 7-103 32-136 (148)
257 PRK07807 inosine 5-monophospha 68.5 22 0.00047 30.5 6.7 55 62-119 238-293 (479)
258 PLN02949 transferase, transfer 68.4 75 0.0016 27.1 10.2 110 8-138 303-421 (463)
259 cd05844 GT1_like_7 Glycosyltra 68.3 58 0.0013 25.8 11.3 109 8-139 219-336 (367)
260 PRK14099 glycogen synthase; Pr 68.0 74 0.0016 27.2 9.9 67 64-136 370-441 (485)
261 PRK10188 DNA-binding transcrip 67.8 0.66 1.4E-05 35.7 -2.3 23 164-186 178-200 (240)
262 cd01573 modD_like ModD; Quinol 67.8 58 0.0013 25.6 8.8 95 11-121 155-257 (272)
263 TIGR01761 thiaz-red thiazoliny 67.2 58 0.0013 26.6 8.7 47 93-139 64-114 (343)
264 cd00331 IGPS Indole-3-glycerol 67.0 49 0.0011 24.7 7.8 67 66-135 48-116 (217)
265 cd01836 FeeA_FeeB_like SGNH_hy 66.9 41 0.00089 24.2 7.3 85 8-102 2-115 (191)
266 PRK09776 putative diguanylate 66.7 49 0.0011 31.0 9.2 99 23-133 978-1087(1092)
267 PF14097 SpoVAE: Stage V sporu 66.3 49 0.0011 24.2 9.5 84 11-103 3-95 (180)
268 cd04726 KGPDC_HPS 3-Keto-L-gul 65.9 50 0.0011 24.2 11.6 85 21-121 92-185 (202)
269 PRK07428 nicotinate-nucleotide 65.9 43 0.00093 26.7 7.5 55 79-136 183-237 (288)
270 PRK00955 hypothetical protein; 65.8 85 0.0018 28.0 9.8 109 15-139 26-180 (620)
271 COG2070 Dioxygenases related t 65.6 73 0.0016 26.0 9.6 81 24-118 119-209 (336)
272 PLN02591 tryptophan synthase 65.6 62 0.0014 25.2 11.5 99 11-123 110-219 (250)
273 PRK06731 flhF flagellar biosyn 65.3 66 0.0014 25.3 10.4 105 9-122 104-220 (270)
274 PTZ00314 inosine-5'-monophosph 65.2 25 0.00054 30.3 6.5 55 63-120 253-308 (495)
275 PRK13561 putative diguanylate 65.2 50 0.0011 29.1 8.6 102 22-132 537-646 (651)
276 TIGR00007 phosphoribosylformim 65.1 57 0.0012 24.6 11.2 53 66-121 162-217 (230)
277 PRK09016 quinolinate phosphori 65.0 40 0.00087 27.0 7.1 54 79-136 196-249 (296)
278 PRK03372 ppnK inorganic polyph 65.0 72 0.0016 25.7 11.6 109 9-140 6-129 (306)
279 PRK06978 nicotinate-nucleotide 64.9 23 0.0005 28.3 5.8 69 64-136 176-246 (294)
280 PLN02316 synthase/transferase 64.7 1.3E+02 0.0029 28.6 11.4 70 64-139 920-998 (1036)
281 PRK07896 nicotinate-nucleotide 64.7 42 0.00092 26.7 7.2 69 64-136 170-240 (289)
282 PRK06096 molybdenum transport 64.6 47 0.001 26.4 7.4 94 10-119 159-261 (284)
283 PRK14974 cell division protein 64.6 77 0.0017 25.9 11.3 102 8-122 168-287 (336)
284 KOG2550 IMP dehydrogenase/GMP 64.2 31 0.00066 29.0 6.4 55 61-118 261-316 (503)
285 PRK08857 para-aminobenzoate sy 64.1 25 0.00053 26.0 5.6 29 11-39 2-30 (193)
286 PRK03708 ppnK inorganic polyph 64.0 71 0.0015 25.2 10.4 107 10-140 2-113 (277)
287 cd04726 KGPDC_HPS 3-Keto-L-gul 63.3 44 0.00095 24.5 6.9 11 78-88 40-50 (202)
288 COG0300 DltE Short-chain dehyd 63.3 72 0.0016 25.1 9.2 87 6-100 4-91 (265)
289 KOG1562 Spermidine synthase [A 62.9 56 0.0012 26.3 7.4 63 10-83 147-215 (337)
290 PRK08745 ribulose-phosphate 3- 62.8 59 0.0013 24.8 7.5 58 63-120 132-197 (223)
291 PF02662 FlpD: Methyl-viologen 62.7 29 0.00062 23.8 5.3 46 76-122 12-59 (124)
292 PRK06172 short chain dehydroge 62.7 64 0.0014 24.3 8.2 34 6-39 5-38 (253)
293 PRK02645 ppnK inorganic polyph 62.5 79 0.0017 25.3 10.3 106 9-139 4-115 (305)
294 PRK08005 epimerase; Validated 62.3 31 0.00067 26.1 5.8 56 63-121 128-190 (210)
295 PF00290 Trp_syntA: Tryptophan 62.0 21 0.00045 28.0 5.0 54 77-132 73-132 (259)
296 TIGR00696 wecB_tagA_cpsF bacte 62.0 60 0.0013 23.8 8.0 70 7-89 47-124 (177)
297 TIGR00089 RNA modification enz 62.0 89 0.0019 26.2 9.2 95 17-137 12-113 (429)
298 cd00331 IGPS Indole-3-glycerol 61.9 65 0.0014 24.1 12.3 80 29-121 118-200 (217)
299 PRK14723 flhF flagellar biosyn 61.9 1.3E+02 0.0028 27.6 10.6 102 9-121 216-330 (767)
300 PRK07455 keto-hydroxyglutarate 61.6 62 0.0014 23.8 7.8 66 38-119 112-177 (187)
301 cd01572 QPRTase Quinolinate ph 61.5 43 0.00092 26.3 6.7 54 80-136 170-223 (268)
302 PRK14325 (dimethylallyl)adenos 61.2 1E+02 0.0022 26.0 10.4 99 14-137 13-119 (444)
303 cd01568 QPRTase_NadC Quinolina 61.1 57 0.0012 25.6 7.4 54 80-136 169-222 (269)
304 PRK12825 fabG 3-ketoacyl-(acyl 61.0 65 0.0014 23.8 8.1 30 8-37 6-35 (249)
305 PF10727 Rossmann-like: Rossma 60.9 52 0.0011 22.7 7.3 110 7-119 9-123 (127)
306 PRK14333 (dimethylallyl)adenos 60.8 82 0.0018 26.7 8.8 99 15-138 17-123 (448)
307 PF01380 SIS: SIS domain SIS d 60.4 46 0.001 22.2 6.1 99 10-127 7-109 (131)
308 PRK05653 fabG 3-ketoacyl-(acyl 60.3 67 0.0015 23.8 8.1 32 9-40 6-37 (246)
309 PRK07454 short chain dehydroge 60.2 69 0.0015 23.9 8.4 34 7-40 5-38 (241)
310 cd03799 GT1_amsK_like This is 59.9 82 0.0018 24.6 10.3 110 8-140 210-328 (355)
311 PRK06096 molybdenum transport 59.7 52 0.0011 26.2 6.9 53 80-136 178-230 (284)
312 TIGR01163 rpe ribulose-phospha 59.6 68 0.0015 23.6 9.8 56 77-135 43-99 (210)
313 COG0621 MiaB 2-methylthioadeni 59.6 56 0.0012 27.7 7.4 100 16-139 14-117 (437)
314 PF02581 TMP-TENI: Thiamine mo 59.6 65 0.0014 23.4 9.4 68 37-120 101-175 (180)
315 cd06533 Glyco_transf_WecG_TagA 59.3 65 0.0014 23.3 8.9 78 7-100 45-131 (171)
316 PRK09722 allulose-6-phosphate 58.5 68 0.0015 24.6 7.2 59 63-121 130-196 (229)
317 TIGR00078 nadC nicotinate-nucl 58.5 67 0.0014 25.2 7.3 54 80-136 166-219 (265)
318 PF01113 DapB_N: Dihydrodipico 58.4 55 0.0012 22.2 6.2 30 9-38 1-31 (124)
319 PRK12744 short chain dehydroge 58.3 79 0.0017 23.9 9.6 37 1-37 1-37 (257)
320 TIGR00262 trpA tryptophan synt 58.3 87 0.0019 24.4 11.2 43 78-123 186-228 (256)
321 PRK14332 (dimethylallyl)adenos 58.2 1.2E+02 0.0025 25.8 10.2 99 16-139 22-128 (449)
322 PRK08385 nicotinate-nucleotide 58.2 41 0.00089 26.7 6.1 69 66-138 157-225 (278)
323 KOG3111 D-ribulose-5-phosphate 58.2 78 0.0017 23.8 8.2 101 22-137 102-217 (224)
324 cd03806 GT1_ALG11_like This fa 57.9 1.1E+02 0.0024 25.5 10.8 111 8-139 273-392 (419)
325 PRK07067 sorbitol dehydrogenas 57.8 80 0.0017 23.8 9.8 43 5-47 3-45 (257)
326 PRK08072 nicotinate-nucleotide 57.8 94 0.002 24.6 10.5 92 9-119 159-257 (277)
327 COG0036 Rpe Pentose-5-phosphat 57.7 69 0.0015 24.5 6.9 59 63-121 131-196 (220)
328 PRK08072 nicotinate-nucleotide 57.6 64 0.0014 25.5 7.1 70 64-136 158-229 (277)
329 cd03807 GT1_WbnK_like This fam 57.6 87 0.0019 24.2 10.7 64 64-139 269-332 (365)
330 cd00956 Transaldolase_FSA Tran 57.5 80 0.0017 23.8 7.9 50 74-123 136-186 (211)
331 PRK07765 para-aminobenzoate sy 57.5 58 0.0012 24.5 6.7 31 9-39 1-31 (214)
332 PRK01911 ppnK inorganic polyph 57.4 98 0.0021 24.7 11.2 58 63-140 64-121 (292)
333 COG4122 Predicted O-methyltran 57.3 75 0.0016 24.2 7.2 59 8-75 84-144 (219)
334 PRK06559 nicotinate-nucleotide 56.9 64 0.0014 25.8 7.0 71 64-137 167-239 (290)
335 COG1184 GCD2 Translation initi 56.7 32 0.0007 27.6 5.3 61 32-103 120-180 (301)
336 COG2247 LytB Putative cell wal 56.6 1.1E+02 0.0023 24.9 8.2 30 8-37 76-105 (337)
337 KOG1467 Translation initiation 56.1 63 0.0014 27.8 7.0 80 6-102 383-470 (556)
338 PRK14077 pnk inorganic polypho 56.1 1E+02 0.0022 24.5 10.2 106 10-140 12-121 (287)
339 PRK01231 ppnK inorganic polyph 56.1 1E+02 0.0022 24.6 11.1 106 10-140 6-119 (295)
340 COG2909 MalT ATP-dependent tra 56.1 1.7 3.6E-05 39.4 -2.1 22 165-186 831-852 (894)
341 PRK10537 voltage-gated potassi 56.0 1.1E+02 0.0024 25.5 8.6 106 8-121 240-355 (393)
342 PRK14722 flhF flagellar biosyn 55.8 1.2E+02 0.0026 25.2 10.3 90 9-109 168-263 (374)
343 TIGR01334 modD putative molybd 55.6 76 0.0016 25.1 7.2 54 80-137 177-230 (277)
344 cd03802 GT1_AviGT4_like This f 55.5 96 0.0021 24.1 10.7 64 64-138 244-307 (335)
345 PRK04885 ppnK inorganic polyph 55.4 1E+02 0.0022 24.2 9.5 58 64-140 36-94 (265)
346 PRK07239 bifunctional uroporph 55.3 1.1E+02 0.0024 25.1 8.6 152 8-178 142-319 (381)
347 PRK12653 fructose-6-phosphate 55.3 92 0.002 23.7 7.8 49 74-123 138-188 (220)
348 TIGR03569 NeuB_NnaB N-acetylne 55.2 1.1E+02 0.0025 24.8 9.7 102 20-138 77-191 (329)
349 cd03798 GT1_wlbH_like This fam 55.2 96 0.0021 23.9 10.3 67 64-140 279-345 (377)
350 TIGR02095 glgA glycogen/starch 54.9 1.3E+02 0.0028 25.4 10.6 107 9-138 321-436 (473)
351 PRK02155 ppnK NAD(+)/NADH kina 54.5 1.1E+02 0.0024 24.4 11.2 107 10-140 7-120 (291)
352 PRK05867 short chain dehydroge 54.4 92 0.002 23.5 8.4 43 4-46 5-47 (253)
353 COG0673 MviM Predicted dehydro 54.3 1.1E+02 0.0024 24.3 9.9 108 8-138 3-116 (342)
354 PRK07478 short chain dehydroge 54.1 92 0.002 23.4 8.1 35 5-39 3-37 (254)
355 PRK05848 nicotinate-nucleotide 53.9 58 0.0013 25.7 6.3 55 79-136 169-223 (273)
356 cd01840 SGNH_hydrolase_yrhL_li 53.8 73 0.0016 22.1 7.7 83 11-102 2-88 (150)
357 cd04731 HisF The cyclase subun 53.7 97 0.0021 23.6 8.5 53 66-121 44-99 (243)
358 TIGR01037 pyrD_sub1_fam dihydr 53.6 59 0.0013 25.7 6.5 54 80-136 224-283 (300)
359 PRK13585 1-(5-phosphoribosyl)- 53.6 73 0.0016 24.2 6.8 53 66-121 166-221 (241)
360 PF01008 IF-2B: Initiation fac 53.2 72 0.0016 24.9 6.9 80 7-102 132-219 (282)
361 PRK11557 putative DNA-binding 53.0 1.1E+02 0.0023 23.8 9.8 80 14-108 136-217 (278)
362 TIGR00735 hisF imidazoleglycer 52.9 1E+02 0.0023 23.7 7.7 70 39-121 30-102 (254)
363 PRK07109 short chain dehydroge 52.7 1.2E+02 0.0026 24.3 8.6 45 1-45 1-45 (334)
364 PRK06849 hypothetical protein; 52.5 1.3E+02 0.0028 24.7 10.5 37 7-43 3-39 (389)
365 PRK06139 short chain dehydroge 52.5 1.2E+02 0.0026 24.4 8.5 42 5-46 4-45 (330)
366 PF01959 DHQS: 3-dehydroquinat 52.5 59 0.0013 26.7 6.2 71 64-138 97-169 (354)
367 PF05991 NYN_YacP: YacP-like N 52.4 86 0.0019 22.6 7.5 60 75-141 76-135 (166)
368 TIGR00736 nifR3_rel_arch TIM-b 52.1 1.1E+02 0.0023 23.6 11.3 57 62-120 160-218 (231)
369 PRK12655 fructose-6-phosphate 52.1 1E+02 0.0023 23.4 7.7 49 74-123 138-188 (220)
370 PRK12481 2-deoxy-D-gluconate 3 52.0 1E+02 0.0022 23.3 10.6 88 1-101 1-91 (251)
371 PRK12656 fructose-6-phosphate 52.0 1.1E+02 0.0023 23.5 8.5 49 74-123 140-190 (222)
372 PRK12826 3-ketoacyl-(acyl-carr 52.0 97 0.0021 23.1 9.7 32 8-39 6-37 (251)
373 PRK12726 flagellar biosynthesi 51.9 1.4E+02 0.0031 25.0 11.3 108 8-122 234-351 (407)
374 TIGR00064 ftsY signal recognit 51.4 1.2E+02 0.0026 23.9 10.8 106 8-121 100-224 (272)
375 TIGR03471 HpnJ hopanoid biosyn 51.4 71 0.0015 27.2 7.0 59 63-124 68-128 (472)
376 COG0107 HisF Imidazoleglycerol 51.3 97 0.0021 24.0 6.8 69 38-119 29-100 (256)
377 cd04732 HisA HisA. Phosphorib 51.2 1E+02 0.0022 23.1 11.3 53 66-121 163-218 (234)
378 TIGR00511 ribulose_e2b2 ribose 50.9 1.3E+02 0.0028 24.1 8.0 79 7-102 140-226 (301)
379 cd03805 GT1_ALG2_like This fam 50.8 1.3E+02 0.0028 24.2 11.4 108 8-139 245-364 (392)
380 PRK06935 2-deoxy-D-gluconate 3 50.7 1.1E+02 0.0023 23.2 10.0 84 5-101 12-99 (258)
381 PF09936 Methyltrn_RNA_4: SAM- 50.6 1E+02 0.0022 22.9 6.6 102 10-125 44-161 (185)
382 PRK06552 keto-hydroxyglutarate 50.5 1.1E+02 0.0023 23.2 8.4 80 22-119 99-180 (213)
383 PRK11059 regulatory protein Cs 50.4 1.1E+02 0.0023 27.2 8.1 94 20-125 534-638 (640)
384 PRK01372 ddl D-alanine--D-alan 50.2 52 0.0011 25.9 5.7 40 20-70 24-63 (304)
385 PRK07764 DNA polymerase III su 49.9 71 0.0015 29.5 7.0 74 62-139 119-194 (824)
386 PRK06106 nicotinate-nucleotide 49.9 1.1E+02 0.0024 24.3 7.3 55 79-136 181-235 (281)
387 PRK07062 short chain dehydroge 49.7 1.1E+02 0.0024 23.1 9.3 33 7-39 7-39 (265)
388 PRK05742 nicotinate-nucleotide 49.6 92 0.002 24.7 6.8 53 80-136 178-230 (277)
389 PRK01033 imidazole glycerol ph 49.6 1.2E+02 0.0026 23.5 8.5 57 66-125 169-230 (258)
390 PRK12829 short chain dehydroge 49.6 1.1E+02 0.0024 23.0 7.6 41 7-47 10-50 (264)
391 PF00218 IGPS: Indole-3-glycer 49.4 1.3E+02 0.0027 23.6 9.6 88 22-122 148-238 (254)
392 PRK07523 gluconate 5-dehydroge 49.3 1.1E+02 0.0024 23.0 9.5 34 7-40 9-42 (255)
393 cd01844 SGNH_hydrolase_like_6 49.3 41 0.0009 24.0 4.6 40 62-103 56-103 (177)
394 TIGR03765 ICE_PFL_4695 integra 49.3 78 0.0017 21.2 8.0 70 10-101 26-101 (105)
395 PRK07107 inosine 5-monophospha 49.3 1.3E+02 0.0028 26.1 8.1 56 63-121 254-311 (502)
396 cd08556 GDPD Glycerophosphodie 49.2 95 0.0021 22.1 8.0 39 78-121 149-187 (189)
397 PRK05848 nicotinate-nucleotide 49.1 1.3E+02 0.0029 23.7 10.0 95 10-120 154-255 (273)
398 PRK13695 putative NTPase; Prov 48.8 97 0.0021 22.1 7.2 73 63-136 96-171 (174)
399 PF08415 NRPS: Nonribosomal pe 48.7 32 0.0007 20.0 3.2 28 75-102 3-32 (58)
400 PRK09496 trkA potassium transp 48.6 1.6E+02 0.0035 24.6 9.0 55 63-120 65-122 (453)
401 CHL00200 trpA tryptophan synth 48.5 1.3E+02 0.0028 23.6 10.8 98 11-123 123-232 (263)
402 COG2089 SpsE Sialic acid synth 48.5 1.5E+02 0.0032 24.2 9.3 105 17-138 88-203 (347)
403 COG4981 Enoyl reductase domain 48.3 93 0.002 27.3 6.9 81 50-137 85-172 (717)
404 PF03932 CutC: CutC family; I 48.3 1.2E+02 0.0025 22.9 8.1 93 15-120 96-197 (201)
405 PRK13143 hisH imidazole glycer 48.1 74 0.0016 23.6 5.9 33 9-41 1-33 (200)
406 TIGR03061 pip_yhgE_Nterm YhgE/ 48.1 69 0.0015 22.8 5.6 43 7-50 42-94 (164)
407 PRK08649 inosine 5-monophospha 48.0 1.6E+02 0.0035 24.4 10.2 55 62-121 153-214 (368)
408 PRK06124 gluconate 5-dehydroge 47.7 1.2E+02 0.0026 22.8 8.2 85 6-100 9-95 (256)
409 cd03808 GT1_cap1E_like This fa 47.7 1.3E+02 0.0027 23.1 10.8 66 64-139 264-329 (359)
410 PRK08883 ribulose-phosphate 3- 47.6 1.2E+02 0.0027 23.0 9.1 58 63-121 128-194 (220)
411 PF04131 NanE: Putative N-acet 47.6 1.2E+02 0.0025 22.7 10.4 84 22-121 82-172 (192)
412 PRK14183 bifunctional 5,10-met 47.6 1.4E+02 0.0031 23.7 8.3 74 7-87 32-114 (281)
413 COG0134 TrpC Indole-3-glycerol 47.3 1.4E+02 0.003 23.4 11.2 88 22-122 146-236 (254)
414 PRK03378 ppnK inorganic polyph 47.3 1.4E+02 0.0031 23.7 10.9 110 9-140 6-120 (292)
415 PRK10551 phage resistance prot 47.3 1.9E+02 0.0041 25.1 9.9 98 24-133 402-510 (518)
416 COG1184 GCD2 Translation initi 47.3 1.5E+02 0.0032 23.9 8.4 78 8-102 145-230 (301)
417 PLN02275 transferase, transfer 47.3 1.5E+02 0.0033 24.0 11.5 104 8-136 261-370 (371)
418 PF11072 DUF2859: Protein of u 47.2 1E+02 0.0022 21.9 7.8 70 10-100 64-138 (142)
419 PRK14182 bifunctional 5,10-met 47.1 1.5E+02 0.0032 23.7 8.5 74 7-87 31-113 (282)
420 cd01573 modD_like ModD; Quinol 47.0 1.2E+02 0.0027 23.8 7.2 54 79-136 171-224 (272)
421 TIGR01859 fruc_bis_ald_ fructo 46.9 1.4E+02 0.003 23.7 7.5 69 38-121 152-229 (282)
422 cd00564 TMP_TenI Thiamine mono 46.8 1.1E+02 0.0023 22.0 9.4 55 63-121 115-177 (196)
423 TIGR02918 accessory Sec system 46.8 1.9E+02 0.0041 24.9 11.9 105 8-137 350-465 (500)
424 TIGR01232 lacD tagatose 1,6-di 46.5 55 0.0012 26.5 5.1 44 79-122 227-276 (325)
425 PLN02939 transferase, transfer 46.5 2.6E+02 0.0057 26.5 10.7 69 64-138 857-930 (977)
426 PRK04841 transcriptional regul 46.2 2.9 6.3E-05 38.2 -2.3 22 165-186 838-859 (903)
427 PRK15482 transcriptional regul 46.1 1.4E+02 0.0031 23.3 10.4 84 11-108 140-224 (285)
428 PRK11596 cyclic-di-GMP phospho 45.3 1.4E+02 0.003 22.9 9.4 96 26-133 147-252 (255)
429 TIGR03020 EpsA transcriptional 45.0 2.8 6.1E-05 32.5 -2.2 24 163-186 188-211 (247)
430 PRK08085 gluconate 5-dehydroge 44.9 1.3E+02 0.0029 22.6 9.4 86 7-101 8-94 (254)
431 PRK08535 translation initiatio 44.8 1.6E+02 0.0035 23.6 8.5 79 7-102 145-231 (310)
432 cd00532 MGS-like MGS-like doma 44.8 91 0.002 20.7 6.5 33 14-46 7-39 (112)
433 TIGR02855 spore_yabG sporulati 44.8 1.6E+02 0.0034 23.4 10.9 102 8-123 104-226 (283)
434 TIGR00512 salvage_mtnA S-methy 44.7 1.7E+02 0.0037 23.8 8.4 82 7-103 179-269 (331)
435 PRK06543 nicotinate-nucleotide 44.7 1.3E+02 0.0029 23.9 7.0 56 79-137 180-235 (281)
436 cd03794 GT1_wbuB_like This fam 44.6 1.5E+02 0.0032 23.1 10.4 67 64-139 295-365 (394)
437 COG3010 NanE Putative N-acetyl 44.6 1.4E+02 0.003 22.8 9.3 67 38-122 134-209 (229)
438 TIGR02470 sucr_synth sucrose s 44.5 89 0.0019 28.7 6.7 62 66-137 646-707 (784)
439 PRK11572 copper homeostasis pr 44.5 1.5E+02 0.0033 23.1 9.0 92 16-121 98-197 (248)
440 TIGR00875 fsa_talC_mipB fructo 44.4 1.4E+02 0.003 22.6 8.4 84 27-123 96-186 (213)
441 PRK03692 putative UDP-N-acetyl 44.3 1.5E+02 0.0032 23.0 8.8 76 7-98 104-187 (243)
442 cd06296 PBP1_CatR_like Ligand- 44.1 1.4E+02 0.003 22.5 7.4 16 22-37 19-34 (270)
443 PRK14328 (dimethylallyl)adenos 44.1 2E+02 0.0042 24.3 10.3 98 17-138 14-120 (439)
444 PRK02083 imidazole glycerol ph 44.0 1.5E+02 0.0032 22.8 10.3 65 66-133 170-244 (253)
445 PRK00654 glgA glycogen synthas 43.8 2E+02 0.0043 24.3 10.7 108 8-138 311-427 (466)
446 COG0421 SpeE Spermidine syntha 43.7 1.6E+02 0.0036 23.3 9.0 70 9-90 101-181 (282)
447 TIGR03499 FlhF flagellar biosy 43.7 1.1E+02 0.0023 24.1 6.5 53 9-71 225-280 (282)
448 COG1748 LYS9 Saccharopine dehy 43.6 2E+02 0.0042 24.1 9.3 92 9-117 2-94 (389)
449 COG1091 RfbD dTDP-4-dehydrorha 43.5 83 0.0018 25.0 5.7 54 10-75 2-62 (281)
450 PRK13306 ulaD 3-keto-L-gulonat 43.5 1.4E+02 0.0031 22.5 7.7 43 66-113 58-100 (216)
451 PRK11543 gutQ D-arabinose 5-ph 43.4 1.7E+02 0.0036 23.3 7.7 78 14-106 50-129 (321)
452 cd08563 GDPD_TtGDE_like Glycer 43.4 1.4E+02 0.003 22.4 8.0 37 80-121 191-227 (230)
453 PLN02501 digalactosyldiacylgly 43.4 2.7E+02 0.0058 25.7 10.1 105 8-139 577-681 (794)
454 cd08562 GDPD_EcUgpQ_like Glyce 43.3 1.4E+02 0.003 22.3 9.1 37 80-121 190-226 (229)
455 PRK14337 (dimethylallyl)adenos 43.1 2.1E+02 0.0045 24.3 10.3 96 16-137 15-118 (446)
456 PRK05993 short chain dehydroge 43.1 1.1E+02 0.0023 23.6 6.4 32 9-40 5-36 (277)
457 PRK02649 ppnK inorganic polyph 42.9 1.8E+02 0.0038 23.4 10.5 100 21-140 19-125 (305)
458 cd06292 PBP1_LacI_like_10 Liga 42.7 1.5E+02 0.0031 22.4 7.8 16 22-37 19-34 (273)
459 COG1105 FruK Fructose-1-phosph 42.7 1.8E+02 0.0039 23.5 7.9 66 63-134 129-194 (310)
460 PF04131 NanE: Putative N-acet 42.7 1.4E+02 0.0031 22.3 7.1 68 32-117 45-114 (192)
461 TIGR01815 TrpE-clade3 anthrani 42.7 1.5E+02 0.0033 26.9 7.9 33 7-39 515-547 (717)
462 PRK04161 tagatose 1,6-diphosph 42.6 74 0.0016 25.9 5.3 43 80-122 229-277 (329)
463 PRK02290 3-dehydroquinate synt 42.4 1E+02 0.0022 25.3 6.0 69 65-138 90-160 (344)
464 TIGR02472 sucr_P_syn_N sucrose 42.3 1.3E+02 0.0028 25.1 7.1 65 65-139 342-406 (439)
465 PRK13146 hisH imidazole glycer 42.2 99 0.0022 23.1 5.8 35 9-43 2-38 (209)
466 PLN02366 spermidine synthase 42.0 1.8E+02 0.0039 23.3 10.1 71 9-90 116-197 (308)
467 COG1954 GlpP Glycerol-3-phosph 42.0 1.4E+02 0.003 22.0 10.2 103 10-119 26-170 (181)
468 cd00429 RPE Ribulose-5-phospha 41.9 1.4E+02 0.003 21.9 7.7 57 64-121 128-193 (211)
469 PRK12723 flagellar biosynthesi 41.8 2.1E+02 0.0045 23.9 10.9 104 8-122 206-321 (388)
470 PRK00726 murG undecaprenyldiph 41.8 1.8E+02 0.0039 23.2 12.6 66 64-139 253-324 (357)
471 PRK08335 translation initiatio 41.7 1.8E+02 0.0038 23.1 8.5 79 7-102 134-220 (275)
472 TIGR01574 miaB-methiolase tRNA 41.6 2.1E+02 0.0047 24.1 8.8 95 18-137 13-116 (438)
473 PRK12399 tagatose 1,6-diphosph 41.6 77 0.0017 25.7 5.2 43 80-122 227-275 (324)
474 TIGR00524 eIF-2B_rel eIF-2B al 41.6 1.8E+02 0.0039 23.3 7.5 81 7-102 151-240 (303)
475 PRK14336 (dimethylallyl)adenos 41.4 2.1E+02 0.0046 24.0 9.6 92 17-133 14-113 (418)
476 TIGR03541 reg_near_HchA LuxR f 41.4 3.5 7.6E-05 31.5 -2.2 24 163-186 169-192 (232)
477 cd04740 DHOD_1B_like Dihydroor 41.3 73 0.0016 25.1 5.2 38 79-119 220-257 (296)
478 PRK07003 DNA polymerase III su 41.3 79 0.0017 29.1 5.8 74 62-139 118-193 (830)
479 PRK13111 trpA tryptophan synth 41.3 1.7E+02 0.0037 22.8 11.3 98 11-123 121-229 (258)
480 COG0107 HisF Imidazoleglycerol 41.2 1.1E+02 0.0025 23.6 5.9 65 66-133 172-246 (256)
481 TIGR00308 TRM1 tRNA(guanine-26 41.2 2.1E+02 0.0045 23.8 9.5 78 9-103 70-149 (374)
482 smart00115 CASc Caspase, inter 41.1 1.6E+02 0.0035 22.5 8.5 53 19-75 30-84 (241)
483 cd01743 GATase1_Anthranilate_S 41.1 1.1E+02 0.0025 22.1 5.9 29 11-39 1-29 (184)
484 PF05582 Peptidase_U57: YabG p 41.1 1.8E+02 0.004 23.1 10.7 102 8-123 105-227 (287)
485 PRK14949 DNA polymerase III su 41.0 97 0.0021 29.0 6.4 74 62-139 118-193 (944)
486 TIGR01163 rpe ribulose-phospha 40.9 1.4E+02 0.0031 21.8 7.2 57 64-121 127-192 (210)
487 cd03825 GT1_wcfI_like This fam 40.9 1.8E+02 0.0038 22.8 7.5 75 9-99 1-82 (365)
488 PRK09522 bifunctional glutamin 40.9 63 0.0014 28.2 5.1 31 9-39 2-32 (531)
489 PRK05581 ribulose-phosphate 3- 40.8 1.5E+02 0.0032 22.0 10.1 58 64-121 132-197 (220)
490 PLN02522 ATP citrate (pro-S)-l 40.6 2.7E+02 0.0058 24.9 12.0 116 9-140 168-317 (608)
491 cd03811 GT1_WabH_like This fam 40.6 1.6E+02 0.0035 22.4 10.3 65 64-138 264-328 (353)
492 PRK06512 thiamine-phosphate py 40.1 74 0.0016 24.2 4.9 53 63-119 131-189 (221)
493 cd00032 CASc Caspase, interleu 40.1 1.7E+02 0.0036 22.4 7.0 52 19-75 32-85 (243)
494 PRK14188 bifunctional 5,10-met 39.8 2E+02 0.0043 23.1 8.6 74 7-87 33-115 (296)
495 PRK10307 putative glycosyl tra 39.8 2.1E+02 0.0045 23.4 12.9 108 8-139 259-373 (412)
496 PRK14171 bifunctional 5,10-met 39.7 2E+02 0.0042 23.0 8.2 74 7-87 33-115 (288)
497 TIGR01125 MiaB-like tRNA modif 39.6 2.3E+02 0.0049 23.8 9.4 92 17-135 12-108 (430)
498 COG1609 PurR Transcriptional r 39.5 2E+02 0.0044 23.1 8.2 21 19-39 75-95 (333)
499 COG0313 Predicted methyltransf 39.3 1.9E+02 0.0042 22.9 8.1 84 9-103 31-116 (275)
500 PF14606 Lipase_GDSL_3: GDSL-l 39.2 32 0.00069 25.3 2.6 59 31-102 32-102 (178)
No 1
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.95 E-value=4.4e-27 Score=177.45 Aligned_cols=165 Identities=22% Similarity=0.367 Sum_probs=135.1
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCC-ceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSS-YQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~-~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++|+|+||||.++..+..+|+..+ ++|+. +.++.++++.+. ..+||++++|+.||+++|+++++.|+
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~-----------~~~pdvvl~Dl~mP~~~G~e~~~~l~ 69 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR-----------ELKPDVVLLDLSMPGMDGLEALKQLR 69 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh-----------hcCCCEEEEcCCCCCCChHHHHHHHH
Confidence 479999999999999999998775 77765 777999999974 44566999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccccc-cccccccc-h
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRK-GLEEIDSA-D 164 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~ 164 (187)
+..| +++|+++|...+..++..+++.||++|+.|+.+++++..+++.+..|..+.+........... ........ .
T Consensus 70 ~~~p--~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
T COG2197 70 ARGP--DIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSSAEAPLAE 147 (211)
T ss_pred HHCC--CCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHHHhhcccccccccccC
Confidence 8877 889999999999999999999999999999999999999999999997543322111100000 00001111 4
Q ss_pred hhhhhcccccccCCCCCCCccC
Q 046192 165 RTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 165 ~~~~~e~~~l~l~~~g~~~~ei 186 (187)
.++.||.+|+.++++|+|||||
T Consensus 148 ~LT~RE~eVL~lla~G~snkeI 169 (211)
T COG2197 148 LLTPRELEVLRLLAEGLSNKEI 169 (211)
T ss_pred CCCHHHHHHHHHHHCCCCHHHH
Confidence 6999999999999999999998
No 2
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.95 E-value=4e-27 Score=169.28 Aligned_cols=160 Identities=21% Similarity=0.285 Sum_probs=138.5
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
...|.|||||..+|+.+..+|+..||.+.++.++.+++......+|+ |+|+|..||+++|.++.+.|.+
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pG-----------clllDvrMPg~sGlelq~~L~~ 72 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPG-----------CLLLDVRMPGMSGLELQDRLAE 72 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCC-----------eEEEecCCCCCchHHHHHHHHh
Confidence 46789999999999999999999999999999999999886555555 9999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccccccccccccchhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRKGLEEIDSADRTR 167 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (187)
.++ ..|||++|++.|.....+|++.||-|||.|||+...|.+++++.+............... -......++
T Consensus 73 ~~~--~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~~~------~~~~l~tLT 144 (202)
T COG4566 73 RGI--RLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQAA------IRARLATLT 144 (202)
T ss_pred cCC--CCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHhcC
Confidence 987 999999999999999999999999999999999999999999998775433222111111 123446689
Q ss_pred hhcccccccCCCCCCCccC
Q 046192 168 TRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 168 ~~e~~~l~l~~~g~~~~ei 186 (187)
+||++|+...-.|+.||+|
T Consensus 145 ~RERqVl~~vV~G~~NKqI 163 (202)
T COG4566 145 PRERQVLDLVVRGLMNKQI 163 (202)
T ss_pred HHHHHHHHHHHcCcccHHH
Confidence 9999999999999999997
No 3
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.93 E-value=2.1e-25 Score=169.89 Aligned_cols=120 Identities=21% Similarity=0.396 Sum_probs=111.3
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++||||||++..+..+...|++.||.|..+.++.++++.+. .. ||+||+|+.+|+++|+++|+++|+.
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-----------~~-~dlviLD~~lP~~dG~~~~~~iR~~ 68 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR-----------EQ-PDLVLLDLMLPDLDGLELCRRLRAK 68 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------cC-CCEEEEECCCCCCCHHHHHHHHHhh
Confidence 38999999999999999999999999999999999999994 34 6799999999999999999999965
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
....+|||++|+.++......++++|||||+.|||++.||...++.++++..
T Consensus 69 -~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 69 -KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred -cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 3348899999999999999999999999999999999999999999998754
No 4
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.91 E-value=1.2e-23 Score=159.23 Aligned_cols=164 Identities=21% Similarity=0.292 Sum_probs=132.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc-e-EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC---CCHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY-Q-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG---MTGYDLL 82 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~-~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~---~~g~~~~ 82 (187)
+++|+|+||++..+..+...|+..++ . +..+.++.+++..+. ...||++++|+.+|+ .+|.+++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-----------~~~~DlvllD~~l~~~~~~~g~~~~ 71 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLP-----------KLDAHVLITDLSMPGDKYGDGITLI 71 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-----------hCCCCEEEEeCcCCCCCCCCHHHHH
Confidence 47999999999999999999987654 4 456899999999884 344679999999999 5999999
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCcccccccccccccc
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRKGLEEIDS 162 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (187)
+.+++..+ .+|||++++..+......+++.|+++|+.||.+.++|..+++.+..|....+........... .....
T Consensus 72 ~~l~~~~~--~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~~~~~~~~~--~~~~~ 147 (216)
T PRK10840 72 KYIKRHFP--SLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKIS--AGGYG 147 (216)
T ss_pred HHHHHHCC--CCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHHHHHHHHhc--cCCCc
Confidence 99998766 899999999999999999999999999999999999999999999886543221100000000 00011
Q ss_pred chhhhhhcccccccCCCCCCCccC
Q 046192 163 ADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 163 ~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
...+++||.++|.++.+|+|++||
T Consensus 148 ~~~Lt~rE~evl~~~~~G~s~~eI 171 (216)
T PRK10840 148 DKRLSPKESEVLRLFAEGFLVTEI 171 (216)
T ss_pred cccCCHHHHHHHHHHHCCCCHHHH
Confidence 245999999999999999999997
No 5
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.91 E-value=3.4e-23 Score=169.63 Aligned_cols=166 Identities=23% Similarity=0.369 Sum_probs=133.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+||||||++..+..+...|+..||.|..+.++.+|++.+. ...+|+|++|+.||+++|+++++.+++
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~-----------~~~~~lvl~Di~mp~~~Gl~ll~~i~~ 72 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALS-----------ESPFDLVLLDIRMPGMDGLELLKEIKS 72 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-----------cCCCCEEEEecCCCCCchHHHHHHHHh
Confidence 457999999999999999999999999999999999999994 335789999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccC----------CCccccccccc
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKE----------PNNINNKRKGL 157 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~ 157 (187)
..+ ++|||++|++.+.+.+..|++.||.||+.|||++++|...+++++......... .....-.+..+
T Consensus 73 ~~~--~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am 150 (464)
T COG2204 73 RDP--DLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAM 150 (464)
T ss_pred hCC--CCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHH
Confidence 987 999999999999999999999999999999999999999999999764322111 11111112223
Q ss_pred cccccchhhhhhcccccccCCCCCCCccC
Q 046192 158 EEIDSADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 158 ~~~~~~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
+++.............+-++++..|+||+
T Consensus 151 ~~l~~~i~kvA~s~a~VLI~GESGtGKEl 179 (464)
T COG2204 151 QQLRRLIAKVAPSDASVLITGESGTGKEL 179 (464)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHH
Confidence 33333333344455566778888888875
No 6
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.90 E-value=8e-23 Score=167.28 Aligned_cols=121 Identities=30% Similarity=0.539 Sum_probs=111.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHH--hCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLK--TSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~--~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
.+||||||++.+|++|..++. +.|+.++. |.+|.+|++.+ ...+||+||.|+.||+++|+++++.+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli-----------~e~~pDiviTDI~MP~mdGLdLI~~i 70 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELI-----------QETQPDIVITDINMPGMDGLDLIKAI 70 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHH-----------HhcCCCEEEEecCCCCCcHHHHHHHH
Confidence 799999999999999999995 45887775 89999999999 55567799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
++..| ++.+|++|++++-+++.+|++.|+.|||+||++.++|.+++.++......
T Consensus 71 ke~~p--~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~ 125 (475)
T COG4753 71 KEQSP--DTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEE 125 (475)
T ss_pred HHhCC--CceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHH
Confidence 99987 99999999999999999999999999999999999999999999877544
No 7
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.88 E-value=1.8e-21 Score=148.33 Aligned_cols=165 Identities=11% Similarity=0.173 Sum_probs=127.2
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhC-Cce-EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTS-SYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~-~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
.+++|+|+||++..+..+...|+.. ++. +..+.++.++++.+.. ..||+|++|+.+|+.+|+++++.
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~-----------~~pdlvllD~~mp~~~gle~~~~ 71 (225)
T PRK10046 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-----------FKPGLILLDNYLPDGRGINLLHE 71 (225)
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-----------cCCCEEEEeCCCCCCcHHHHHHH
Confidence 3689999999999999999999864 675 5569999999999944 44669999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCc---c-c----cccc-
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNN---I-N----NKRK- 155 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~---~-~----~~~~- 155 (187)
+++..+ ..|||++|+..+......+++.||++|+.||++.++|..+++++..+.......... . . ....
T Consensus 72 l~~~~~--~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (225)
T PRK10046 72 LVQAHY--PGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARG 149 (225)
T ss_pred HHhcCC--CCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHHHhccCccCHHHHHHHHhhcccc
Confidence 998765 689999999999999999999999999999999999999999987765432111000 0 0 0000
Q ss_pred -ccccc-ccchhhhhhcccccccCCCC---CCCccC
Q 046192 156 -GLEEI-DSADRTRTRLNDTIDINNDG---LPDLEI 186 (187)
Q Consensus 156 -~~~~~-~~~~~~~~~e~~~l~l~~~g---~~~~ei 186 (187)
..... .....++.+ +|+.++.+| +|++||
T Consensus 150 ~~~~~~~~~~~~Lt~r--~Vl~~~~~g~~g~s~~eI 183 (225)
T PRK10046 150 EPKDELPTGIDPLTLN--AVRKLFKEPGVQHTAETV 183 (225)
T ss_pred cccccCCCCCCHHHHH--HHHHHHHcCCCCcCHHHH
Confidence 00000 112346665 899999995 788887
No 8
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.87 E-value=7.5e-21 Score=129.07 Aligned_cols=111 Identities=32% Similarity=0.573 Sum_probs=103.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCc-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhc
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSY-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESA 89 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 89 (187)
|||+||++..+..+...|+..|+ .+..+.++.++++.+. ...||++++|+.+++.+|.++++.|+...
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~-----------~~~~d~iiid~~~~~~~~~~~~~~i~~~~ 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK-----------KHPPDLIIIDLELPDGDGLELLEQIRQIN 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH-----------HSTESEEEEESSSSSSBHHHHHHHHHHHT
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc-----------ccCceEEEEEeeecccccccccccccccc
Confidence 79999999999999999998899 8889999999999994 44567999999999999999999999988
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHH
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKP 134 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~ 134 (187)
+ .+|+|++++..+.....++++.|+++|+.||++.++|..+++
T Consensus 70 ~--~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 70 P--SIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp T--TSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred c--cccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 6 999999999999999999999999999999999999988764
No 9
>PRK09483 response regulator; Provisional
Probab=99.87 E-value=1.6e-21 Score=146.72 Aligned_cols=165 Identities=19% Similarity=0.238 Sum_probs=132.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTS-SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++|+|+||++..+..+...|... ++.+. .+.++.+++..+. ...||++++|+.+|+.+|.++++.++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvi~d~~~~~~~g~~~~~~l~ 70 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR-----------TNAVDVVLMDMNMPGIGGLEATRKIL 70 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 68999999999999999999874 78776 5889999998884 34577999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCcccccc-ccccccccchh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKR-KGLEEIDSADR 165 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 165 (187)
+..+ .+|+|+++...+......++..|+++|+.||++.++|..+++.+..+............... ...........
T Consensus 71 ~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (217)
T PRK09483 71 RYTP--DVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPATENPFAS 148 (217)
T ss_pred HHCC--CCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHhhcccCCCccccc
Confidence 8776 89999999999999999999999999999999999999999999988543221100000000 00001112345
Q ss_pred hhhhcccccccCCCCCCCccC
Q 046192 166 TRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 166 ~~~~e~~~l~l~~~g~~~~ei 186 (187)
++.+|.+++.++.+|.|++||
T Consensus 149 Lt~rE~~vl~~~~~G~~~~~I 169 (217)
T PRK09483 149 LSERELQIMLMITKGQKVNEI 169 (217)
T ss_pred cCHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999987
No 10
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.87 E-value=5.3e-21 Score=140.27 Aligned_cols=120 Identities=18% Similarity=0.359 Sum_probs=109.1
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhC-CceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTS-SYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~-~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++|||||||+.+.+.-+.++++. ||.++. +.++++|...+...+|| +|++|+-||+.+|++++..++
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pD-----------LILLDiYmPd~~Gi~lL~~ir 69 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPD-----------LILLDIYMPDGNGIELLPELR 69 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhCCC-----------EEEEeeccCCCccHHHHHHHH
Confidence 58999999999999999999875 788876 89999999999665554 999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
..+. .+-||++|+.++.+.+.+|++.|+.|||+|||..++|..++.+-.+...
T Consensus 70 ~~~~--~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 70 SQHY--PVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred hcCC--CCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 9886 8899999999999999999999999999999999999999887776643
No 11
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.85 E-value=2.9e-21 Score=145.19 Aligned_cols=147 Identities=14% Similarity=0.175 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhC---CceEEEeCCHHHHHHHHhccCcccccccccccccEEE---EeccCCCCCHHHHHHHHHhhcCCCC
Q 046192 20 DRKLIERLLKTS---SYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLII---TDYCMPGMTGYDLLRKIKESASLKD 93 (187)
Q Consensus 20 ~~~~l~~~l~~~---~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi---~d~~~~~~~g~~~~~~l~~~~~~~~ 93 (187)
.|.++..+|... ++.+..+.++.++++.+ ...+||++| +|+.||+++|+++++.+++..| .
T Consensus 2 ~r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~-----------~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~ 68 (207)
T PRK11475 2 SSIGIESLFRKFPGNPYKLHTFSSQSSFQDAM-----------SRISFSAVIFSLSAMRSERREGLSCLTELAIKFP--R 68 (207)
T ss_pred chHHHHHHHhcCCCCeeEEEEeCCHHHHHHHh-----------ccCCCCEEEeeccccCCCCCCHHHHHHHHHHHCC--C
Confidence 477889999652 45556789999999988 334567998 6788899999999999999887 8
Q ss_pred CcEEEEeCCCChhHHHHHH-HhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccccccccccccchhhhhhccc
Q 046192 94 IPVVIMSSENIPSRINRCL-EEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRKGLEEIDSADRTRTRLND 172 (187)
Q Consensus 94 ~~iI~ls~~~~~~~~~~a~-~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 172 (187)
+|||++|...+......++ +.||++|+.||.+.++|..+++.+.+|..+........ . .......+++||.+
T Consensus 69 ~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~~~~----~---~~~~~~~LT~RE~e 141 (207)
T PRK11475 69 MRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRLNNQ----W---YINQSRMLSPTERE 141 (207)
T ss_pred CCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHHHHH----h---hccCcCCCCHHHHH
Confidence 9999999987776666665 79999999999999999999999999865432211100 0 00112359999999
Q ss_pred ccccCCCCCCCccC
Q 046192 173 TIDINNDGLPDLEI 186 (187)
Q Consensus 173 ~l~l~~~g~~~~ei 186 (187)
||.++.+|+|||||
T Consensus 142 VL~ll~~G~snkeI 155 (207)
T PRK11475 142 ILRFMSRGYSMPQI 155 (207)
T ss_pred HHHHHHCCCCHHHH
Confidence 99999999999997
No 12
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.85 E-value=4e-21 Score=145.38 Aligned_cols=164 Identities=11% Similarity=0.117 Sum_probs=123.1
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceE-EEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH-
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQV-TAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL- 82 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~- 82 (187)
.+...+++++||+|..+..+..+|+. ++.+ ..+.++.+++..+ . +||+|++|+.+|+.+|++++
T Consensus 7 ~~~~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~-----------~--~~DvvllDi~~p~~~G~~~~~ 72 (216)
T PRK10100 7 SSHGHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDI-----------S--SGSIILLDMMEADKKLIHYWQ 72 (216)
T ss_pred cccCceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccC-----------C--CCCEEEEECCCCCccHHHHHH
Confidence 45567899999999999999999984 4444 4577888887764 1 26799999999999999987
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHH--hCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCcccccccc-ccc
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLE--EGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRKG-LEE 159 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~--~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (187)
+.++...| +++||++|...+ ....++. .||.+|+.|+.+.++|.++++.+..|..+.............. ...
T Consensus 73 ~~i~~~~p--~~~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~~~~~l~~~~~~~~~ 148 (216)
T PRK10100 73 DTLSRKNN--NIKILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRY 148 (216)
T ss_pred HHHHHhCC--CCcEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHHHHHHHHHhhccccc
Confidence 56887776 899999999865 4445555 4999999999999999999999999976543221100000000 000
Q ss_pred -cccchhhhhhcccccccCCCCCCCccC
Q 046192 160 -IDSADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 160 -~~~~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
......++.+|.+++.+..+|+|++||
T Consensus 149 ~~~~~~~Lt~rE~~Vl~l~~~G~s~~eI 176 (216)
T PRK10100 149 NSTESALLTHREKEILNKLRIGASNNEI 176 (216)
T ss_pred CCCccCCCCHHHHHHHHHHHcCCCHHHH
Confidence 001234899999999999999999997
No 13
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.84 E-value=2.8e-20 Score=146.06 Aligned_cols=125 Identities=29% Similarity=0.481 Sum_probs=111.8
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHH
Q 046192 2 GMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDL 81 (187)
Q Consensus 2 ~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 81 (187)
+++..++++|+++||++..+..++.+|+..||.+..+.+|+++++.. ...++|++++|++||+++|.++
T Consensus 8 ~~~~~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~-----------~~~~~dlvllD~~mp~mdg~ev 76 (360)
T COG3437 8 KNEPDEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLL-----------QEEPPDLVLLDVRMPEMDGAEV 76 (360)
T ss_pred CCCCcccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHh-----------cccCCceEEeeccCCCccHHHH
Confidence 34566789999999999999999999999999999999999999988 3445779999999999999999
Q ss_pred HHHHHh-hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 82 LRKIKE-SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 82 ~~~l~~-~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
+.+|+. ......+||+++|+..+.+...+++..||++|+.||+++.+|...+....
T Consensus 77 ~~~lk~~~p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 77 LNKLKAMSPSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred HHHHHhcCCcccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999 44445789999999999999999999999999999999999988875443
No 14
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.84 E-value=2.8e-20 Score=140.09 Aligned_cols=151 Identities=7% Similarity=0.019 Sum_probs=120.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCC--ceE-EEeCCHHHHHHHHhccCcccccccccccccEEEEecc--CCCCCHHHHHHH
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSS--YQV-TAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC--MPGMTGYDLLRK 84 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~--~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~~~~~ 84 (187)
.|+|+||++.++..++.+|+..+ +.+ ..+.++.+++..+. ...||++++|+. +++.+|.++++.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-----------~~~pDlvLlDl~~~l~~~~g~~~i~~ 70 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-----------SLRPSVVFINEDCFIHDASNSQRIKQ 70 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-----------ccCCCEEEEeCcccCCCCChHHHHHH
Confidence 68999999999999999998655 334 35899999999884 334679999966 888899999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCc-eeeCCCChHHHHHHHHHHhhhhhhhccCCCccccccccccccccc
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEE-FFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRKGLEEIDSA 163 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~-yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (187)
|++..| ++++|++|+..+..... ++..|+.. |+.|+.++++|..+++.+..|..+..... . ..+
T Consensus 71 i~~~~p--~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~----~------~~~-- 135 (207)
T PRK15411 71 IINQHP--NTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTITSFL----N------LPT-- 135 (207)
T ss_pred HHHHCC--CCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCccc----c------CCc--
Confidence 999887 89999999887665543 55556555 88999999999999999998865432110 0 001
Q ss_pred hhhhhhcccccccCCCCCCCccC
Q 046192 164 DRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
..+++||.++|.++++|+|+|||
T Consensus 136 ~~LT~RE~eVL~lla~G~snkeI 158 (207)
T PRK15411 136 LSLSRTESSMLRMWMAGQGTIQI 158 (207)
T ss_pred ccCCHHHHHHHHHHHcCCCHHHH
Confidence 24999999999999999999997
No 15
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.84 E-value=2.7e-20 Score=138.78 Aligned_cols=162 Identities=17% Similarity=0.230 Sum_probs=131.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
+|+++||++..+..+...|+..|+.+. .+.++.++++.+. ...||++++|..+|+.+|.++++.+++.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 70 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-----------TLKPDIVIIDVDIPGVNGIQVLETLRKR 70 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-----------ccCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 789999999999999999988899887 5899999999884 3356799999999999999999999987
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccccccccccccchhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRKGLEEIDSADRTRT 168 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (187)
.+ ..|+|++++..+......+++.|+++|+.||++.++|...++.+.++....+..... ..+...........++.
T Consensus 71 ~~--~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lt~ 146 (204)
T PRK09958 71 QY--SGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNR--FVGSLTSDQQKLDSLSK 146 (204)
T ss_pred CC--CCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcccCHHHHH--HHHhccCCCcccccCCH
Confidence 65 789999999999999999999999999999999999999999998774432111000 00000111112235889
Q ss_pred hcccccccCCCCCCCccC
Q 046192 169 RLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 169 ~e~~~l~l~~~g~~~~ei 186 (187)
+|.+++.++..|.+++||
T Consensus 147 ~E~~vl~~l~~g~~~~~I 164 (204)
T PRK09958 147 QEISVMRYILDGKDNNDI 164 (204)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 999999999999999887
No 16
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.84 E-value=3.6e-20 Score=138.35 Aligned_cols=166 Identities=25% Similarity=0.308 Sum_probs=131.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTS-SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
+.+|+++||++..+..+...|... ++.+. .+.++.+++..+. ...||++++|..+|+.+|.++++.+
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~dlvild~~l~~~~g~~~~~~l 71 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR-----------TRPVDLIIMDIDLPGTDGFTFLKRI 71 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 578999999999999999999876 57765 5788899988873 3457799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccccccccccccchh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRKGLEEIDSADR 165 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (187)
+...+ .+|+|++++..+......++..|+++|+.||++.++|..+++.+..+..........................
T Consensus 72 ~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (210)
T PRK09935 72 KQIQS--TVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTDTV 149 (210)
T ss_pred HHhCC--CCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCceeCHHHHHHHHhcccccCcccccc
Confidence 98765 7999999999999999999999999999999999999999999888753211110000000000011112345
Q ss_pred hhhhcccccccCCCCCCCccC
Q 046192 166 TRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 166 ~~~~e~~~l~l~~~g~~~~ei 186 (187)
++.+|.+++.++.+|+|++||
T Consensus 150 lt~re~~vl~~l~~g~s~~eI 170 (210)
T PRK09935 150 LSNREVTILRYLVSGLSNKEI 170 (210)
T ss_pred CCHHHHHHHHHHHcCCCHHHH
Confidence 899999999999999999987
No 17
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.84 E-value=5.7e-20 Score=138.91 Aligned_cols=165 Identities=16% Similarity=0.212 Sum_probs=130.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|+.+|+.+|+++++.+++.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvl~d~~~~~~~g~~~~~~l~~~ 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR-----------QQPPDLVILDVGLPDISGFELCRQLLAF 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 68999999999999999999988999888999999988873 3456799999999999999999999987
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccc--ccc--cc---ccccc
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNIN--NKR--KG---LEEID 161 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~--~~~--~~---~~~~~ 161 (187)
.+ .+|+|++++..+......+++.|+++|+.||++.++|..+++.+.++............ ... .. .....
T Consensus 73 ~~--~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (228)
T PRK11083 73 HP--ALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVKKFAAPSPVIRIGHFELDEPAARISYFG 150 (228)
T ss_pred CC--CCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCccccccCCCceeEECCEEEecCccEEEECC
Confidence 65 89999999998888899999999999999999999999999988876433111100000 000 00 00011
Q ss_pred cchhhhhhcccccccCCCC----CCCccC
Q 046192 162 SADRTRTRLNDTIDINNDG----LPDLEI 186 (187)
Q Consensus 162 ~~~~~~~~e~~~l~l~~~g----~~~~ei 186 (187)
....++.+|.++|.++.+| +|++||
T Consensus 151 ~~~~Lt~~E~~il~~l~~~~~~~~s~~~i 179 (228)
T PRK11083 151 TPLTLTRYEFLLLKTLLLSPGRVFSRQQL 179 (228)
T ss_pred EEeecCHHHHHHHHHHHhCCCceECHHHH
Confidence 2245899999999999986 787766
No 18
>PLN03029 type-a response regulator protein; Provisional
Probab=99.83 E-value=4.6e-19 Score=134.94 Aligned_cols=139 Identities=78% Similarity=1.222 Sum_probs=116.8
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccc--------c-ccccccccEEEEec
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQ--------T-NSQVIQVNLIITDY 71 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~--------~-~~~~~~~dlvi~d~ 71 (187)
|.|....+++||+|||++..+..+...|+..||.+..+.++.++++.+....+|.. . ......+|+||+|+
T Consensus 1 ~~~~~~~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~ 80 (222)
T PLN03029 1 MGITTESQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDY 80 (222)
T ss_pred CCCCCCCCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcC
Confidence 77778888999999999999999999999999999999999999998864432200 0 00123578999999
Q ss_pred cCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 72 CMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 72 ~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.||+++|+++++.+++......+|+|++++........++++.|+++|+.||++..+|...+..+.+.
T Consensus 81 ~mp~~~G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~ 148 (222)
T PLN03029 81 CMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKT 148 (222)
T ss_pred CCCCCCHHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999986543479999999999999999999999999999999999998777665544
No 19
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.83 E-value=1.1e-19 Score=137.00 Aligned_cols=167 Identities=18% Similarity=0.304 Sum_probs=128.6
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+++||++..+..+...|+..|+.+..+.++.+++..+. ...||++++|..+|+.+|+++++.++..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~d~vi~d~~~~~~~g~~~~~~l~~~ 71 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN-----------ERGPDLILLDWMLPGTSGIELCRRLRRR 71 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH-----------hcCCCEEEEECCCCCCcHHHHHHHHHcc
Confidence 58999999999999999999988999988999999999884 3456799999999999999999999976
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCcc------cccccccccccc
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNI------NNKRKGLEEIDS 162 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 162 (187)
.+.+.+|+|++++..+......+++.|+++|+.||++.++|...++.+.++........... .........-..
T Consensus 72 ~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (226)
T TIGR02154 72 PETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRIRPQLSDEVIEVGDLSLDPVAHRVFRGGQ 151 (226)
T ss_pred ccCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcccccccccCceEECCEEEEcCccEEEECCE
Confidence 43347899999999999999999999999999999999999999999887643211110000 000000000111
Q ss_pred chhhhhhcccccccCCC----CCCCccC
Q 046192 163 ADRTRTRLNDTIDINND----GLPDLEI 186 (187)
Q Consensus 163 ~~~~~~~e~~~l~l~~~----g~~~~ei 186 (187)
...++.+|.+++.++.. |+|+++|
T Consensus 152 ~~~Lt~~E~~il~~l~~~~~~~~s~~~i 179 (226)
T TIGR02154 152 PLSLGPTEFRLLHFFMTHPERVYSREQL 179 (226)
T ss_pred EEEcCHHHHHHHHHHHhCCCceEcHHHH
Confidence 23589999999999887 4555443
No 20
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.83 E-value=1.4e-19 Score=136.06 Aligned_cols=165 Identities=20% Similarity=0.310 Sum_probs=128.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++|+++||++..+..+...|+..|+.+..+.++.+++..+. ...||++++|..+|+.+|.++++.+++.
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvild~~l~~~~g~~~~~~i~~~ 69 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-----------SAPYDAVILDLTLPGMDGRDILREWREK 69 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------hCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 37999999999999999999988999888999999988873 3357799999999999999999999987
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCC--c---cccccccccccccc
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPN--N---INNKRKGLEEIDSA 163 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~ 163 (187)
.+ .+|+|++++..+......++..||++|+.||++.++|...++.+.+.......... . ..............
T Consensus 70 ~~--~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (219)
T PRK10336 70 GQ--REPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEP 147 (219)
T ss_pred CC--CCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhccccCCCCceeECCEEEEcccCEEEECCEE
Confidence 65 88999999999999999999999999999999999999999888764321110000 0 00000000001122
Q ss_pred hhhhhhcccccccCCCC----CCCccC
Q 046192 164 DRTRTRLNDTIDINNDG----LPDLEI 186 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~g----~~~~ei 186 (187)
..++.+|.+++.++..| .|+++|
T Consensus 148 ~~Lt~~E~~il~~l~~~~~~~~s~~~i 174 (219)
T PRK10336 148 LTLKPKEFALLELLMRNAGRVLPRKLI 174 (219)
T ss_pred EecCHHHHHHHHHHHhCCCccCcHHHH
Confidence 34889999999999988 777765
No 21
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.82 E-value=5.4e-19 Score=133.05 Aligned_cols=164 Identities=18% Similarity=0.260 Sum_probs=127.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhc
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESA 89 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 89 (187)
+|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|..+|+.+|+++++.++...
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~d~illd~~~~~~~g~~~~~~l~~~~ 70 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLE-----------SGHYSLVVLDLGLPDEDGLHLLRRWRQKK 70 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-----------hCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 7999999999999999999988998888999999998883 34567999999999999999999999876
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCcccccc-----ccccccccch
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKR-----KGLEEIDSAD 164 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 164 (187)
+ ..|+|++++..+......+++.|+++|+.||++.++|...++.+.++............... .....-....
T Consensus 71 ~--~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (222)
T PRK10643 71 Y--TLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQGQGENELQVGNLTLNLGRQQVWLDGQEL 148 (222)
T ss_pred C--CCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhccccCCceEECCEEEEcCCCEEEECCEEE
Confidence 5 78999999999999999999999999999999999999999888866432211111000000 0000011223
Q ss_pred hhhhhcccccccCC--CCCCC-ccC
Q 046192 165 RTRTRLNDTIDINN--DGLPD-LEI 186 (187)
Q Consensus 165 ~~~~~e~~~l~l~~--~g~~~-~ei 186 (187)
.++.+|.+++.++. .|.+. +|+
T Consensus 149 ~Lt~~E~~il~~l~~~~g~~~~~~~ 173 (222)
T PRK10643 149 ILTPKEFALLSRLMLKAGSPVHREI 173 (222)
T ss_pred ecCHHHHHHHHHHHhCCCceEcHHH
Confidence 58889999998754 77763 544
No 22
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.82 E-value=5.8e-19 Score=133.74 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=128.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHHHHHh
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIKE 87 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~~ 87 (187)
+|+++||++..+..+...|+..||.+..+.++.+++..+. ...||++++|..+|+ .+|+++++.+++
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvild~~l~~~~~~g~~~~~~i~~ 70 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR-----------QRLPDLAIIDIGLGEEIDGGFMLCQDLRS 70 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH-----------hCCCCEEEEECCCCCCCCCHHHHHHHHHh
Confidence 6899999999999999999988999988999999999883 345679999999998 589999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccC-C-Ccccc---c-----cccc
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKE-P-NNINN---K-----RKGL 157 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~-~-~~~~~---~-----~~~~ 157 (187)
..+ ++|+|++++..+......+++.||++|+.||++.++|...++.+.++....... . ..... . ....
T Consensus 71 ~~~--~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (227)
T TIGR03787 71 LSA--TLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRAEALQKPQKQDDLITRGPLTLDSDRMTV 148 (227)
T ss_pred cCC--CCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhhccccccccceEEECCEEEEcccCEE
Confidence 765 789999999999999999999999999999999999999999988764321110 0 00000 0 0000
Q ss_pred cccccchhhhhhcccccccCCC--CC--CCccC
Q 046192 158 EEIDSADRTRTRLNDTIDINND--GL--PDLEI 186 (187)
Q Consensus 158 ~~~~~~~~~~~~e~~~l~l~~~--g~--~~~ei 186 (187)
..-.....++.+|.++|.++.. |. |+++|
T Consensus 149 ~~~~~~~~Lt~~E~~il~~l~~~~g~v~s~~~i 181 (227)
T TIGR03787 149 FWQDQPIDLTVTEFWMVHALAKHPGHVKSRQQL 181 (227)
T ss_pred EECCEEecCCHHHHHHHHHHHhCCCccccHHHH
Confidence 0011224589999999999998 64 76665
No 23
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.81 E-value=2.9e-19 Score=133.75 Aligned_cols=170 Identities=22% Similarity=0.356 Sum_probs=132.4
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHH
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTS-SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDL 81 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 81 (187)
++....+|+++++++..+..+...|... ++.+. .+.++.+++..+. ...||++++|..+++.+|.++
T Consensus 2 ~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~dlvl~d~~l~~~~~~~~ 70 (216)
T PRK10651 2 SNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-----------SLDPDLILLDLNMPGMNGLET 70 (216)
T ss_pred CCCcceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH-----------hCCCCEEEEeCCCCCCcHHHH
Confidence 4556789999999999999999999764 56554 5889999999883 345779999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCcc-c-ccccc-cc
Q 046192 82 LRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNI-N-NKRKG-LE 158 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~-~-~~~~~-~~ 158 (187)
++.+++..+ ..|+++++...+......+++.|+++|+.||++..+|...++.+..+........... . ..... ..
T Consensus 71 ~~~l~~~~~--~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (216)
T PRK10651 71 LDKLREKSL--SGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRAT 148 (216)
T ss_pred HHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHHhhcccCc
Confidence 999998765 7899999999899999999999999999999999999999999987743211100000 0 00000 00
Q ss_pred ccccchhhhhhcccccccCCCCCCCccC
Q 046192 159 EIDSADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 159 ~~~~~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
.......++.+|.+++.++.+|+++++|
T Consensus 149 ~~~~~~~Lt~rE~~vl~~l~~g~~~~~i 176 (216)
T PRK10651 149 TERDVNQLTPRERDILKLIAQGLPNKMI 176 (216)
T ss_pred cccccccCCHHHHHHHHHHHcCCCHHHH
Confidence 0111234899999999999999999986
No 24
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.81 E-value=3.9e-19 Score=134.78 Aligned_cols=157 Identities=17% Similarity=0.308 Sum_probs=123.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhc
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESA 89 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 89 (187)
+|++++|++..+..+...|+..|+.+..+.++.++++.+. ...||++++|..+|+.+|+++++.+++..
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-----------~~~~dlvild~~~~~~~g~~~~~~lr~~~ 70 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-----------TGDYDLIILDIMLPDVNGWDIVRMLRSAN 70 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------hCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 7999999999999999999988998888999999998873 34577999999999999999999999876
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCC-Cccccc-----cccccccccc
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEP-NNINNK-----RKGLEEIDSA 163 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~ 163 (187)
+ .+|+|++++..+......+++.|+++|+.||++.++|...++.+.+......... ...... ......-...
T Consensus 71 ~--~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (227)
T PRK09836 71 K--GMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTR 148 (227)
T ss_pred C--CCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcccccCCCCcEEEcCEEEEcccCEEEECCEE
Confidence 5 8999999999999999999999999999999999999999988876532111110 000000 0001111223
Q ss_pred hhhhhhcccccccCCC
Q 046192 164 DRTRTRLNDTIDINND 179 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~ 179 (187)
-.++.+|.+++.++..
T Consensus 149 i~Lt~~E~~ll~~l~~ 164 (227)
T PRK09836 149 ITLTSKEFTLLEFFLR 164 (227)
T ss_pred EecCHHHHHHHHHHHh
Confidence 3478888888887775
No 25
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.81 E-value=4.1e-19 Score=135.45 Aligned_cols=169 Identities=22% Similarity=0.348 Sum_probs=130.5
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
+..++++|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|+.+|+.+|+++++
T Consensus 2 ~~~~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~-----------~~~~d~illd~~~~~~~g~~~~~ 70 (240)
T CHL00148 2 MENSKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR-----------KEQPDLVILDVMMPKLDGYGVCQ 70 (240)
T ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHH
Confidence 4556789999999999999999999988999888899999998873 34577999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccC----CCcccc---c---
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKE----PNNINN---K--- 153 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~----~~~~~~---~--- 153 (187)
.+++. + ++|+|++++..+......+++.|+++|+.||++.++|...++.+.++....... ...... .
T Consensus 71 ~l~~~-~--~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (240)
T CHL00148 71 EIRKE-S--DVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRTNKKSFSSKIPNSSIIRIGFLKID 147 (240)
T ss_pred HHHhc-C--CCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhccccccccccCCCceEEECCEEEE
Confidence 99974 4 799999999999999999999999999999999999999998887664321100 000000 0
Q ss_pred --cccccccccchhhhhhcccccccCCC----CCCCccC
Q 046192 154 --RKGLEEIDSADRTRTRLNDTIDINND----GLPDLEI 186 (187)
Q Consensus 154 --~~~~~~~~~~~~~~~~e~~~l~l~~~----g~~~~ei 186 (187)
......-.....++.+|.+++.++.. |+|++||
T Consensus 148 ~~~~~~~~~~~~~~Lt~~E~~il~~l~~~~~~~~s~~~i 186 (240)
T CHL00148 148 LNKKQVYKNNERIRLTGMEFSLLELLISKSGEIFSRATI 186 (240)
T ss_pred cCCCEEEECCEEEEcCHHHHHHHHHHHHCCCEEEcHHHH
Confidence 00000111223488899999988853 6787765
No 26
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.81 E-value=3.2e-19 Score=137.10 Aligned_cols=118 Identities=24% Similarity=0.343 Sum_probs=103.2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTS-SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++|||+||++..+..+...|... ++.+. .+.++.+++..+.. ....||+|++|+.+|+++|+++++.++
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~DlvilD~~~p~~~G~eli~~l~ 72 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFN---------SDTPIDLILLDIYMQQENGLDLLPVLH 72 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---------cCCCCCEEEEecCCCCCCcHHHHHHHH
Confidence 68999999999999999999764 67655 57889999887732 123478999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
+..+ .+|||++|+..+......+++.|+++|+.||++.++|..++....
T Consensus 73 ~~~~--~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~ 121 (239)
T PRK10430 73 EAGC--KSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 (239)
T ss_pred hhCC--CCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 8776 899999999999999999999999999999999999999998743
No 27
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.81 E-value=3.3e-19 Score=132.08 Aligned_cols=155 Identities=23% Similarity=0.306 Sum_probs=124.9
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhC-Cce-EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTS-SYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~-~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++|+|+||++..+..+...|... ++. +..+.++.+++..+. ...||+|++|..+|+.+|.++++.++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~dlvi~d~~~~~~~g~~~~~~l~ 70 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP-----------GRGVQVCICDISMPDISGLELLSQLP 70 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHc
Confidence 58999999999999999999754 565 456899999999883 34567999999999999999999886
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccccccccccccchhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRKGLEEIDSADRT 166 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (187)
. ..|+|++++..+......+++.|+++|+.||++.+++..+++.+.++......... ... .. .....+
T Consensus 71 ~-----~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~--~~~---~~--~~~~~L 138 (196)
T PRK10360 71 K-----GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIA--IKL---AS--GRQDPL 138 (196)
T ss_pred c-----CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCeeeCHHHH--HHH---Hh--ccccCC
Confidence 3 67899999999999999999999999999999999999999999987432111000 000 00 112358
Q ss_pred hhhcccccccCCCCCCCccC
Q 046192 167 RTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 167 ~~~e~~~l~l~~~g~~~~ei 186 (187)
+++|.+++.++.+|+++++|
T Consensus 139 t~~E~~il~~l~~g~~~~~I 158 (196)
T PRK10360 139 TKRERQVAEKLAQGMAVKEI 158 (196)
T ss_pred CHHHHHHHHHHHCCCCHHHH
Confidence 88999999999999999886
No 28
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.80 E-value=9e-19 Score=132.95 Aligned_cols=121 Identities=24% Similarity=0.427 Sum_probs=108.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+++||++..+..+...|+..|+.+..+.++.+++..+. ...||++++|..+|+.+|.++++.+++.
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-----------~~~~dlvild~~l~~~~g~~~~~~l~~~ 71 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-----------EPWPDLILLDWMLPGGSGIQFIKHLKRE 71 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------ccCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 58999999999999999999988999999999999999884 3456799999999999999999999986
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
...+.+|+|++++..+......+++.|+++|+.||++.++|...++.+.++.
T Consensus 72 ~~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 123 (229)
T PRK10161 72 SMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 (229)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 4334789999999999999999999999999999999999999999888763
No 29
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.80 E-value=1.2e-18 Score=130.22 Aligned_cols=169 Identities=22% Similarity=0.325 Sum_probs=131.0
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHh-CCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKT-SSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~-~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
.....+|+++++++..+..+...|.. .++.+. .+.++.+++..+. ...||++++|..+++.+|.+++
T Consensus 3 ~~~~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~dlvi~d~~~~~~~~~~~~ 71 (215)
T PRK10403 3 EATPFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN-----------RLDPDVILLDLNMKGMSGLDTL 71 (215)
T ss_pred CceeEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-----------hcCCCEEEEecCCCCCcHHHHH
Confidence 34468999999999999999999975 467765 5889999988873 3457799999999999999999
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccccc-cccccc
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRK-GLEEID 161 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 161 (187)
+.+++..+ ..|+++++...+......+++.|+++|+.||++.++|..+++.+..+................ ......
T Consensus 72 ~~l~~~~~--~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (215)
T PRK10403 72 NALRRDGV--TAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEED 149 (215)
T ss_pred HHHHHhCC--CCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHHHhhhccCCCCc
Confidence 99998765 789999998888889999999999999999999999999999887764321110000000000 000111
Q ss_pred cchhhhhhcccccccCCCCCCCccC
Q 046192 162 SADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 162 ~~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
....++.+|.+++.+..+|.|++||
T Consensus 150 ~~~~Lt~~e~~vl~~~~~g~s~~~i 174 (215)
T PRK10403 150 PFSVLTERELDVLHELAQGLSNKQI 174 (215)
T ss_pred ccccCCHHHHHHHHHHHCCCCHHHH
Confidence 2245899999999999999999987
No 30
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.80 E-value=2.6e-18 Score=119.45 Aligned_cols=120 Identities=16% Similarity=0.237 Sum_probs=108.7
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
.....+.||+|||..+...|.+.+++-||.|..+.+.++++..+. ..+|...++|+.+.+.+|+.+++.
T Consensus 6 ~~pd~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar-----------t~~PayAvvDlkL~~gsGL~~i~~ 74 (182)
T COG4567 6 IGPDKSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR-----------TAPPAYAVVDLKLGDGSGLAVIEA 74 (182)
T ss_pred cCCCceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh-----------cCCCceEEEEeeecCCCchHHHHH
Confidence 333347899999999999999999999999999999999999994 445669999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
|++..+ +..+|++|.+.+-..+.+|.+.||.+||.||-+.+++..++.+-.
T Consensus 75 lr~~~~--d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~~ 125 (182)
T COG4567 75 LRERRA--DMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRRE 125 (182)
T ss_pred HHhcCC--cceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhcC
Confidence 999987 999999999999999999999999999999999999887765544
No 31
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.79 E-value=1.6e-18 Score=130.13 Aligned_cols=157 Identities=19% Similarity=0.311 Sum_probs=124.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcC
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESAS 90 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 90 (187)
|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|..+|+.+|.++++.+++..+
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~ 69 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL-----------KDDYDLIILDVMLPGMDGWQILQTLRRSGK 69 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHccCC
Confidence 589999999999999999988998888999999999883 345779999999999999999999998765
Q ss_pred CCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccc-----cccccccccchh
Q 046192 91 LKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNK-----RKGLEEIDSADR 165 (187)
Q Consensus 91 ~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 165 (187)
.+|+|++++..+......++..|+++|+.||++.+++...++.+.++.............. ......-.....
T Consensus 70 --~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (218)
T TIGR01387 70 --QTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSHSLNSTVLEIADLRMDSVRHRVSRGNIRIT 147 (218)
T ss_pred --CCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccccCCCCeEEECCEEEEcccCEEEECCEEEe
Confidence 8999999999999999999999999999999999999999998887654322111100000 000001112235
Q ss_pred hhhhcccccccCCCC
Q 046192 166 TRTRLNDTIDINNDG 180 (187)
Q Consensus 166 ~~~~e~~~l~l~~~g 180 (187)
++.+|.+++.++..+
T Consensus 148 Lt~~E~~il~~l~~~ 162 (218)
T TIGR01387 148 LTRKEFQLLWLLMRR 162 (218)
T ss_pred CCHHHHHHHHHHHhC
Confidence 888999999988877
No 32
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.79 E-value=5e-18 Score=138.42 Aligned_cols=125 Identities=23% Similarity=0.467 Sum_probs=115.2
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
...+||++||+...+..++.+|...||.+..+.++.+|+..+.. .+||+|++|+.||++||++++..+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e-----------~~~dlil~d~~mp~~dg~el~~~lr 199 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE-----------LPPDLVLLDANMPDMDGLELCTRLR 199 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc-----------CCCcEEEEecCCCccCHHHHHHHHh
Confidence 45899999999999999999999999999999999999999943 4677999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
.......+|+|++++.++......||+.|++||+.||++..++...+++.++...+
T Consensus 200 ~~~~t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 200 QLERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred cccccccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 98877789999999999999999999999999999999999998888888877553
No 33
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.78 E-value=7.7e-18 Score=127.76 Aligned_cols=160 Identities=19% Similarity=0.298 Sum_probs=125.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+++||++..+..+...|+..|+.+..+.++.+++..+. ..||++++|+.+|+.+|.++++.+++.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~------------~~~d~vl~d~~~~~~~g~~~~~~l~~~ 69 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD------------DSIDLLLLDVMMPKKNGIDTLKELRQT 69 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh------------cCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 48999999999999999999988999888999999998772 147799999999999999999999986
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCC---cc-----cccc--cccc
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPN---NI-----NNKR--KGLE 158 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~---~~-----~~~~--~~~~ 158 (187)
. ..|+|++++..+......+++.|+++|+.||++.++|...++.+.++......... .. .... ....
T Consensus 70 ~---~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (232)
T PRK10955 70 H---QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALSLNPGRQ 146 (232)
T ss_pred C---CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhccccccccccccCCCceEEECCEEEecCCC
Confidence 4 38999999998888899999999999999999999999999988876432111100 00 0000 0000
Q ss_pred c---cccchhhhhhcccccccCCCCCCC
Q 046192 159 E---IDSADRTRTRLNDTIDINNDGLPD 183 (187)
Q Consensus 159 ~---~~~~~~~~~~e~~~l~l~~~g~~~ 183 (187)
. -.....++.+|.++|.++..|.+.
T Consensus 147 ~~~~~~~~~~Lt~~E~~~l~~l~~~~~~ 174 (232)
T PRK10955 147 EASFDGQTLELTGTEFTLLYLLAQHLGQ 174 (232)
T ss_pred EEEECCEEecCCHHHHHHHHHHHhCCCc
Confidence 0 011235899999999999988764
No 34
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.78 E-value=2.3e-17 Score=114.56 Aligned_cols=120 Identities=35% Similarity=0.626 Sum_probs=101.9
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHH-HHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGN-KALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
.+..+||++||++..+..+...|...|+.+..+.++. ++++.+...+ .||++++|+.||+++|+++++.
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~----------~~dlii~D~~mp~~~G~~~~~~ 72 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP----------QPDLILLDINMPGMDGIELLRR 72 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC----------CCCEEEEeCCCCCCCHHHHHHH
Confidence 3568999999999999999999999999999999996 9999994321 3779999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHH-HHHHHHHHh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLAD-VNKLKPHLM 137 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~-l~~~i~~~~ 137 (187)
+++..+ .+|++++|+.........+++.|+++|+.||+...+ |...+....
T Consensus 73 l~~~~~--~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 73 LRARGP--NIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred HHhCCC--CCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHH
Confidence 999743 778888888877776777899999999999977776 666665433
No 35
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.77 E-value=2.4e-17 Score=124.64 Aligned_cols=118 Identities=22% Similarity=0.391 Sum_probs=108.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhc
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESA 89 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 89 (187)
+|+++||++..+..+...|+..|+.+..+.++.+++..+. ...||++++|..+|+.+|+++++.+++..
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-----------~~~~dlvild~~l~~~~g~~l~~~lr~~~ 70 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-----------EHLPDIAIVDLGLPDEDGLSLIRRWRSND 70 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------hCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999998883 34577999999999999999999999876
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+ ++|+|++++..+......+++.||++|+.||++..+|...++.+.++.
T Consensus 71 ~--~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 71 V--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred C--CCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 5 899999999999999999999999999999999999999998887653
No 36
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.77 E-value=3.4e-17 Score=125.17 Aligned_cols=123 Identities=20% Similarity=0.412 Sum_probs=111.1
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
+.+..+||++||++..+..+...|+..|+.+..+.++.+++..+ ....||+|++|..+|+.+|+++++.
T Consensus 2 ~~~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~ 70 (239)
T PRK09468 2 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLL-----------TRESFHLMVLDLMLPGEDGLSICRR 70 (239)
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHH
Confidence 34457899999999999999999999999999999999999888 3445779999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+++..+ .+|+|++++..+......+++.|+++|+.||++.++|...++.+.++.
T Consensus 71 lr~~~~--~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 71 LRSQNN--PTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred HHhcCC--CCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 998765 899999999999999999999999999999999999999999887653
No 37
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.77 E-value=5.7e-18 Score=125.74 Aligned_cols=166 Identities=17% Similarity=0.253 Sum_probs=128.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTS-SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
..+|+++++++..+..+...|... ++.+. .+.++.+++..+ ....||++++|..+++.+|.++++.+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~~~~~~~~l 71 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNAC-----------RQLEPDIVILDLGLPGMNGLDVIPQL 71 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 378999999999999999999765 46654 578888888877 33457799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccccccccccccchh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRKGLEEIDSADR 165 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (187)
++..+ ..|+|++++..+......+++.|+++|+.||++..+|...+..+..+..........................
T Consensus 72 ~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
T PRK15369 72 HQRWP--AMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADDTNPPL 149 (211)
T ss_pred HHHCC--CCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCceeCHHHHHHHHHHhccCCCCcccC
Confidence 98765 7899999999999999999999999999999999999999998877643211000000000000000112234
Q ss_pred hhhhcccccccCCCCCCCccC
Q 046192 166 TRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 166 ~~~~e~~~l~l~~~g~~~~ei 186 (187)
++.+|.+++.+..+|.+++||
T Consensus 150 lt~~e~~vl~l~~~g~~~~~I 170 (211)
T PRK15369 150 LTPRERQILKLITEGYTNRDI 170 (211)
T ss_pred CCHHHHHHHHHHHCCCCHHHH
Confidence 888999999999999999886
No 38
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.77 E-value=2.1e-17 Score=124.69 Aligned_cols=158 Identities=16% Similarity=0.294 Sum_probs=123.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhc
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESA 89 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 89 (187)
+|+++||++..+..+...|+..|+.+..+.++.+++..+. ...||++++|..+|+.+|+++++.+++.
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~-----------~~~~dlvi~d~~~~~~~g~~~~~~l~~~- 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-----------KDDYALIILDIMLPGMDGWQILQTLRTA- 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------cCCCCEEEEECCCCCCCHHHHHHHHHcC-
Confidence 7999999999999999999988998888999999998883 3457799999999999999999999874
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCC-c---cccccccccccccchh
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPN-N---INNKRKGLEEIDSADR 165 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 165 (187)
+ .+|+|++++..+......+++.|+++|+.||++.++|...++.+.++......... . ..........-.....
T Consensus 70 ~--~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (223)
T PRK11517 70 K--QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISIT 147 (223)
T ss_pred C--CCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccccCcCCeEEECCEEEEcCCCEEEECCEEEe
Confidence 3 78999999999999999999999999999999999999999888765322111000 0 0000000011112235
Q ss_pred hhhhcccccccCCCCC
Q 046192 166 TRTRLNDTIDINNDGL 181 (187)
Q Consensus 166 ~~~~e~~~l~l~~~g~ 181 (187)
++.+|.+++.++..+.
T Consensus 148 Lt~~E~~il~~l~~~~ 163 (223)
T PRK11517 148 LTRKEFQLLWLLASRA 163 (223)
T ss_pred CCHHHHHHHHHHHhCC
Confidence 8889999988887753
No 39
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.77 E-value=4e-17 Score=123.47 Aligned_cols=118 Identities=22% Similarity=0.379 Sum_probs=106.6
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|+.+|+.+|.++++.+++.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-----------~~~~dlvild~~l~~~~g~~~~~~lr~~ 70 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-----------TRKPDLIILDLGLPDGDGIEFIRDLRQW 70 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 58999999999999999999989999988999999988773 3457799999999999999999999974
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+ .+|+|++++..+......+++.|+++|+.||++.++|...++.+.++.
T Consensus 71 -~--~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 71 -S--AIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred -C--CCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 3 789999999999999999999999999999999999999998887653
No 40
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.76 E-value=2e-17 Score=126.15 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=126.5
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+|+++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|..+|+.+|.++++.++.
T Consensus 10 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvl~d~~~~~~~g~~~~~~l~~ 78 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR-----------QTPPDLILLDLMLPGTDGLTLCREIRR 78 (240)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 458999999999999999999988999888999999999883 345779999999999999999999986
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCC--Cccccc-----ccccccc
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEP--NNINNK-----RKGLEEI 160 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~ 160 (187)
. + .+|++++++..+......+++.|+++|+.||++.++|...++.+.++........ ...... .......
T Consensus 79 ~-~--~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (240)
T PRK10710 79 F-S--DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDESRFQASWR 155 (240)
T ss_pred c-C--CCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhccccCCCccceEeCCEEEEcCceEEEEC
Confidence 3 3 7899999999888888999999999999999999999999888876532211100 000000 0000011
Q ss_pred ccchhhhhhcccccccCCC----CCCCccC
Q 046192 161 DSADRTRTRLNDTIDINND----GLPDLEI 186 (187)
Q Consensus 161 ~~~~~~~~~e~~~l~l~~~----g~~~~ei 186 (187)
.....++.+|.+++.++.. ++|..+|
T Consensus 156 ~~~~~Lt~~e~~il~~l~~~~~~~~s~~~i 185 (240)
T PRK10710 156 GKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 (240)
T ss_pred CEEeecCHHHHHHHHHHHhCCCceEcHHHH
Confidence 1223588899999998876 5665554
No 41
>PRK11173 two-component response regulator; Provisional
Probab=99.76 E-value=6.4e-17 Score=123.62 Aligned_cols=118 Identities=22% Similarity=0.450 Sum_probs=107.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+||++||++..+..+...|+..|+.+..+.++.+++..+ ....||+|++|..+|+.+|+++++.+++.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr~~ 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL-----------SENDINLVIMDINLPGKNGLLLARELREQ 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hhCCCCEEEEcCCCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999988 34457799999999999999999999974
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+ .+|+|++++..+......+++.|+++|+.||++.++|...++.+++..
T Consensus 73 -~--~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 73 -A--NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred -C--CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 3 789999999999888999999999999999999999998888887653
No 42
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.75 E-value=1.9e-17 Score=122.22 Aligned_cols=160 Identities=23% Similarity=0.303 Sum_probs=129.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+|+++++++..+..+...|...|+.+..+.++.+++..+ ....||++++|..+++.+|+++++.+++
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~ii~d~~~~~~~~~~~~~~l~~ 71 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDAL-----------PGLRFGCVVTDVRMPGIDGIELLRRLKA 71 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHh-----------ccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 47899999999999999999988899998899999998887 3445779999999999999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccccccccccccchhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRKGLEEIDSADRTR 167 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (187)
..+ .+|+|++++..+......+++.|+.+|+.||++..++...++.+..+......... ... ........++
T Consensus 72 ~~~--~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~~~~~~~~~----~~~--~~~~~~~~l~ 143 (202)
T PRK09390 72 RGS--PLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQAPEAAKSEA----VAA--DIRARIASLS 143 (202)
T ss_pred cCC--CCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhhhhcccchh----HHH--HHHHHHHhhh
Confidence 765 89999999999999999999999999999999999999888887765332111000 000 0011234577
Q ss_pred hhcccccccCCCCCCCccC
Q 046192 168 TRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 168 ~~e~~~l~l~~~g~~~~ei 186 (187)
.++.+++.+...|.++++|
T Consensus 144 ~~e~~vl~~~~~~~~~~~i 162 (202)
T PRK09390 144 ERERQVMDGLVAGLSNKVI 162 (202)
T ss_pred hhHHHHHHHHHccCchHHH
Confidence 8899999998889988875
No 43
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.74 E-value=1.4e-16 Score=120.14 Aligned_cols=117 Identities=25% Similarity=0.446 Sum_probs=106.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+++||++..+..+...|...|+.+..+.++.++++.+ ....||++++|..+|+.+|.++++.+++.
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr~~ 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIM-----------QNQHVDLILLDINLPGEDGLMLTRELRSR 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 5899999999999999999998999999999999999888 33457799999999999999999999974
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+ .+|+|++++..+......+++.||++|+.||++..+|...+..+.+.
T Consensus 72 -~--~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r 119 (221)
T PRK10766 72 -S--TVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWR 119 (221)
T ss_pred -C--CCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhh
Confidence 3 78999999999999999999999999999999999999988887765
No 44
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.74 E-value=5.5e-17 Score=122.00 Aligned_cols=159 Identities=18% Similarity=0.311 Sum_probs=124.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhc
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESA 89 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 89 (187)
+|+++|+++..+..+...|...|+.+..+.++.++...+. ...||++++|..+|+.+|.++++.++...
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~d~vild~~~~~~~~~~~~~~i~~~~ 70 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ-----------SEMYALAVLDINMPGMDGLEVLQRLRKRG 70 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------hCCCCEEEEeCCCCCCcHHHHHHHHHhcC
Confidence 7899999999999999999888998888999999988773 34577999999999999999999999876
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCcccccc---cc-ccccccchh
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKR---KG-LEEIDSADR 165 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~ 165 (187)
+ +.|+|++++..+......+++.|+++|+.||++..++...++.+..+............... .. ...-.....
T Consensus 71 ~--~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (221)
T PRK15479 71 Q--TLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQVQEVQQLGELIFHDEGYFLLQGQPLA 148 (221)
T ss_pred C--CCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhccCcCccEEECCEEEccCCeEEECCEEEe
Confidence 5 78999999998899999999999999999999999999999888765432211111100000 00 000011235
Q ss_pred hhhhcccccccCCCCC
Q 046192 166 TRTRLNDTIDINNDGL 181 (187)
Q Consensus 166 ~~~~e~~~l~l~~~g~ 181 (187)
++++|.+++.++..|.
T Consensus 149 Lt~~E~~il~~l~~~~ 164 (221)
T PRK15479 149 LTPREQALLTVLMYRR 164 (221)
T ss_pred cCHHHHHHHHHHHhCC
Confidence 8999999998887754
No 45
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.73 E-value=2.5e-16 Score=120.52 Aligned_cols=118 Identities=22% Similarity=0.259 Sum_probs=106.1
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+||++||++..+..+...|+..|+.+..+.++.+++..+. ...||++++|..+|+.+|+++++.+++.
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-----------~~~~dlvild~~l~~~~g~~~~~~ir~~ 70 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL-----------REQPDLVLLDIMLPGKDGMTICRDLRPK 70 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh-----------hCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 48999999999999999999999999999999999999883 3456799999999999999999999984
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
. ..|+|++++..+......+++.|+++|+.||++..+|...++.+.+..
T Consensus 71 ~---~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 71 W---QGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred C---CCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 3 679999999888888889999999999999999999999998877653
No 46
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.73 E-value=2.9e-17 Score=125.76 Aligned_cols=117 Identities=22% Similarity=0.421 Sum_probs=106.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++|+||||+......|..+|++.|..+..|+...+++..+...+| |++++|+.||+++|++|+++++..
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kp-----------DLifldI~mp~~ngiefaeQvr~i 69 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKP-----------DLIFLDIVMPYMNGIEFAEQVRDI 69 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcCC-----------CEEEEEeecCCccHHHHHHHHHHh
Confidence 478999999999999999999999888889999999999965554 599999999999999999999998
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.+ .+|||++|++ .++...++...+.||+.||++++.|.+++.+..+..
T Consensus 70 ~~--~v~iifIssh--~eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 70 ES--AVPIIFISSH--AEYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred hc--cCcEEEEecc--hhhhhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 86 9999999996 778888898999999999999999999999888653
No 47
>PRK15115 response regulator GlrR; Provisional
Probab=99.73 E-value=7.4e-17 Score=134.35 Aligned_cols=122 Identities=27% Similarity=0.407 Sum_probs=110.7
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
.....+||||||++..+..+...|+..|+.+..+.++.+++..+. ...||+||+|..+|+++|+++++.
T Consensus 2 ~~~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~-----------~~~~dlvilD~~lp~~~g~~ll~~ 70 (444)
T PRK15115 2 SRKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN-----------REKVDLVISDLRMDEMDGMQLFAE 70 (444)
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------cCCCCEEEEcCCCCCCCHHHHHHH
Confidence 344689999999999999999999999999999999999999884 345679999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+++..+ .+|||++++..+......+++.|+++|+.||++.++|...+..+...
T Consensus 71 l~~~~~--~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 71 IQKVQP--GMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred HHhcCC--CCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 998766 89999999999999999999999999999999999999999887764
No 48
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.73 E-value=3e-16 Score=120.38 Aligned_cols=118 Identities=25% Similarity=0.391 Sum_probs=104.2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+||++||++..+..+...|+..||.+..+.++.+++..+. ...||++++|..+|+.+|+++++.++..
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvi~d~~l~~~~g~~l~~~i~~~ 70 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA-----------SETVDVVVVDLNLGREDGLEIVRSLATK 70 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-----------hCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 38999999999999999999989999999999999998883 3456799999999999999999999874
Q ss_pred cCCCCCcEEEEeCC-CChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 89 ASLKDIPVVIMSSE-NIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 89 ~~~~~~~iI~ls~~-~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+ .+|+|++++. .+......+++.||++|+.||++.++|...++.+.+..
T Consensus 71 -~--~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 71 -S--DVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred -C--CCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 2 7899999985 46677789999999999999999999999998877653
No 49
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.72 E-value=2.4e-16 Score=141.37 Aligned_cols=122 Identities=27% Similarity=0.441 Sum_probs=111.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
.++||||||++..+..+...|+..|+.+..+.++.++++.+ ....||+|++|+.||+++|+++++.|++
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~-----------~~~~~dlil~D~~mp~~~g~~~~~~lr~ 735 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQA-----------KQRPFDLILMDIQMPGMDGIRACELIRQ 735 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 57899999999999999999999999999999999999998 4446779999999999999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.....++|||++|+..+......+++.|+++|+.||++..+|...+++.....
T Consensus 736 ~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 788 (919)
T PRK11107 736 LPHNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGP 788 (919)
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcccc
Confidence 64444899999999999999999999999999999999999999998887653
No 50
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.72 E-value=2.7e-16 Score=141.03 Aligned_cols=120 Identities=28% Similarity=0.532 Sum_probs=110.5
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
...+|||+||++..+..+...|+..||.+..+.++.++++.+ ....||+|++|+.||+++|+++++.++
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l-----------~~~~~DlVl~D~~mP~mdG~el~~~ir 868 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-----------SKNHIDIVLTDVNMPNMDGYRLTQRLR 868 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HhCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999999999 444577999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+..+ .+|||++|+....+....+++.|+++|+.||++.++|...+.+....
T Consensus 869 ~~~~--~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~ 919 (924)
T PRK10841 869 QLGL--TLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 919 (924)
T ss_pred hcCC--CCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 9765 89999999999999999999999999999999999999998877654
No 51
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.72 E-value=2.7e-16 Score=130.77 Aligned_cols=122 Identities=27% Similarity=0.453 Sum_probs=110.5
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
....++|+||||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.+|+++|+++++.
T Consensus 2 ~~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~DlvilD~~m~~~~G~~~~~~ 70 (441)
T PRK10365 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR-----------EQVFDLVLCDVRMAEMDGIATLKE 70 (441)
T ss_pred CCCcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHH
Confidence 345689999999999999999999999999999999999999883 345779999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+++..+ .+|+|++|+..+......+++.|+.+|+.||++.++|...+..+...
T Consensus 71 ir~~~~--~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 71 IKALNP--AIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred HHhhCC--CCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 998765 89999999999999999999999999999999999999998887654
No 52
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.72 E-value=2.6e-16 Score=131.96 Aligned_cols=119 Identities=28% Similarity=0.437 Sum_probs=109.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
+.+||||||++..+..+...|+..||.+..+.++.+++..+. ...||+|++|..+|+++|+++++.++.
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~-----------~~~~DlvllD~~lp~~dgl~~l~~ir~ 71 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA-----------SKTPDVLLSDIRMPGMDGLALLKQIKQ 71 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-----------cCCCCEEEECCCCCCCCHHHHHHHHHh
Confidence 368999999999999999999999999999999999999984 345779999999999999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
..+ .+|+|++++..+......+++.|+++|+.||++.+++...+.++...
T Consensus 72 ~~~--~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 72 RHP--MLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred hCC--CCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 765 89999999999999999999999999999999999999998887764
No 53
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.71 E-value=7.2e-16 Score=119.87 Aligned_cols=121 Identities=23% Similarity=0.345 Sum_probs=106.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTS-SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
+++||++||++..+..+...|... ++.+. .+.++.+++..+. ...||+|++|+.||+++|+++++.+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~-----------~~~~DlvllD~~mp~~dG~~~l~~i 70 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIK-----------EQQPDVVVLDIIMPHLDGIGVLEKL 70 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 478999999999999999999764 55555 5899999999984 3456799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
++..+...+|+|++++..+......+++.|+++|+.||++.++|...++++..+
T Consensus 71 ~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 71 NEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred HhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 987653348999999999999999999999999999999999999999888755
No 54
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.70 E-value=5.5e-16 Score=139.12 Aligned_cols=121 Identities=21% Similarity=0.304 Sum_probs=110.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+|||+||++..+..+...|+..|+.|..+.++.++++.+.. ..+||+|++|+.||+++|+++++.+++
T Consensus 681 ~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~----------~~~~Dlvl~D~~mp~~~G~~~~~~lr~ 750 (914)
T PRK11466 681 GLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN----------SEPFAAALVDFDLPDYDGITLARQLAQ 750 (914)
T ss_pred CcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc----------CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999999999999998732 235789999999999999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
..+ ++|+|++++.........+++.|+++|+.||++.++|..++.++..+.
T Consensus 751 ~~~--~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 751 QYP--SLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred hCC--CCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 766 899999999999999999999999999999999999999999988664
No 55
>PRK14084 two-component response regulator; Provisional
Probab=99.69 E-value=1.4e-15 Score=117.05 Aligned_cols=117 Identities=19% Similarity=0.323 Sum_probs=100.1
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCC-c-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSS-Y-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~-~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++|+|+||++..+..+...|...+ + .+..+.++.+++..+. ...||++++|+.||+++|+++++.++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~-----------~~~~dlv~lDi~m~~~~G~~~~~~i~ 69 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALL-----------INQYDIIFLDINLMDESGIELAAKIQ 69 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 479999999999999999998765 4 4556899999999883 34577999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+..+ ..++|++++.. ....++++.|+.+|+.||++.++|..+++++..+.
T Consensus 70 ~~~~--~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 70 KMKE--PPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred hcCC--CCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 8765 67788888763 46789999999999999999999999999887553
No 56
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.69 E-value=1e-15 Score=137.33 Aligned_cols=120 Identities=28% Similarity=0.486 Sum_probs=108.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
.++||||||++..+..+...|+..|+.+..+.++.++++.+ ....||+|++|+.||+++|+++++.+|+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~-----------~~~~~dlil~D~~mp~~~G~~~~~~ir~ 758 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELG-----------RQHRFDLVLMDIRMPGLDGLETTQLWRD 758 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 46899999999999999999999999999999999999998 4446779999999999999999999997
Q ss_pred hcC--CCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 88 SAS--LKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 88 ~~~--~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
... .+.+|||++|+..+......+++.|+++|+.||++.++|..++.++..
T Consensus 759 ~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 759 DPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred chhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 421 137899999999999999999999999999999999999999887654
No 57
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.68 E-value=6.1e-16 Score=136.16 Aligned_cols=119 Identities=31% Similarity=0.540 Sum_probs=109.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+||++||++..+......|++.|.++..+.+|.+++..+. ..+.||+|++|++||.+||++..+.||+
T Consensus 666 g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~----------~~~~y~~ifmD~qMP~mDG~e~~~~irk 735 (786)
T KOG0519|consen 666 GPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK----------PPHSYDVIFMDLQMPEMDGYEATREIRK 735 (786)
T ss_pred CCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC----------CCCcccEEEEEcCCcccchHHHHHHHHH
Confidence 578999999999999999999999999999889999999984 2357999999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
... .++|||.+|+..+.....++++.|.|+|+.||++.+.+...+.+.+
T Consensus 736 ~~~-~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 736 KER-WHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred hhc-CCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 764 4899999999999999999999999999999999999988887765
No 58
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.68 E-value=1.8e-15 Score=126.48 Aligned_cols=119 Identities=21% Similarity=0.410 Sum_probs=108.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+|||+||++..+..+...|...||.+..+.++.+++..+. ...||+|++|..+|+++|+++++.+++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~dlillD~~~p~~~g~~ll~~i~~ 72 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA-----------DIHPDVVLMDIRMPEMDGIKALKEMRS 72 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 568999999999999999999999999999999999999884 345779999999999999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
..+ .+|+|++++..+......+++.|+++|+.||++.++|...+..+...
T Consensus 73 ~~~--~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 73 HET--RTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred cCC--CCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 765 89999999999999999999999999999999999999888876643
No 59
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.68 E-value=1.2e-15 Score=137.62 Aligned_cols=121 Identities=22% Similarity=0.383 Sum_probs=110.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+||||||++..+..+...|+..||.|..+.++.++++.+. ...||+|++|+.||+++|+++++.+++
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvl~D~~mp~~~g~~~~~~ir~ 770 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFH-----------QHAFDLALLDINLPDGDGVTLLQQLRA 770 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-----------CCCCCEEEECCCCCCCCHHHHHHHHHh
Confidence 357999999999999999999999999999999999999993 446789999999999999999999998
Q ss_pred hcCCCC-CcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 88 SASLKD-IPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 88 ~~~~~~-~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
..+... +|||++|+.........+++.|+++|+.||++.++|...+..+..+
T Consensus 771 ~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 771 IYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred CccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 765323 8999999999999999999999999999999999999999988754
No 60
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.68 E-value=8e-16 Score=127.59 Aligned_cols=120 Identities=18% Similarity=0.350 Sum_probs=105.4
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
...+||++||++..+..+...|.. .+.+..+.++.+++..+ ....||+|++|+.||+++|+++++.++
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~-----------~~~~~d~vi~d~~~p~~~g~~l~~~i~ 221 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNA-----------AETNYDLVIVSANFENYDPLRLCSQLR 221 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhc-----------ccCCCCEEEecCCCCCchHhHHHHHHH
Confidence 467899999999999999999965 46677789999999987 444577999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+....+.+|+|++|++.+..+...+++.||++|+.||+++++|...+.....
T Consensus 222 ~~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~ 273 (457)
T PRK09581 222 SKERTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIR 273 (457)
T ss_pred hccccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHH
Confidence 7543348999999999999999999999999999999999999888776544
No 61
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.67 E-value=2.3e-15 Score=133.21 Aligned_cols=122 Identities=20% Similarity=0.408 Sum_probs=106.7
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
...+|||+||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||+++|+++++.|+
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~-----------~~~~Dlvl~D~~mp~~~G~e~~~~ir 592 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFD-----------PDEYDLVLLDIQLPDMTGLDIARELR 592 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-----------cCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 3578999999999999999999999999999999999999983 44577999999999999999999999
Q ss_pred hhcCCCC-CcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 87 ESASLKD-IPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 87 ~~~~~~~-~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+..+... +|+|++++... .....+++.|+++|+.||++.++|...++++....
T Consensus 593 ~~~~~~~~~~ii~~ta~~~-~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 593 ERYPREDLPPLVALTANVL-KDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred hccccCCCCcEEEEECCch-HhHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccc
Confidence 8764235 48888888765 44678999999999999999999999999888654
No 62
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.66 E-value=3.5e-15 Score=124.39 Aligned_cols=114 Identities=17% Similarity=0.305 Sum_probs=103.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-----CCHHHHHHHH
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-----MTGYDLLRKI 85 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-----~~g~~~~~~l 85 (187)
|||+||++..+..+...+ .||.+..+.++.++++.+.. ..||+|++|+.+|+ ++|+++++.+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~-----------~~~dlvllD~~mp~~~~~~~~g~~~l~~i 67 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR-----------HEPAVVTLDLGLPPDADGASEGLAALQQI 67 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh-----------CCCCEEEEeCCCCCCcCCCCCHHHHHHHH
Confidence 589999999999999888 68999999999999999943 45679999999996 7999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
++..+ .+|||++|+..+.+....+++.|+++|+.||++.++|..+++.+...
T Consensus 68 ~~~~~--~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 68 LAIAP--DTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred HhhCC--CCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 98876 89999999999999999999999999999999999999888777653
No 63
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.65 E-value=5.8e-15 Score=112.91 Aligned_cols=115 Identities=21% Similarity=0.350 Sum_probs=96.5
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCC-ceE-EEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSS-YQV-TAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~-~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++|+|+||++..+..+...|+..+ +.+ ..+.++.+++..+. ...||++++|+.+|+++|+++++.++
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~dlv~lDi~~~~~~G~~~~~~l~ 70 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIH-----------RLKPDVVFLDIQMPRISGLELVGMLD 70 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHhc
Confidence 699999999999999999998877 443 35789999998883 33577999999999999999999986
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.. + ..++|++|+. .+....+++.|+.+|+.||++.++|..++.++...
T Consensus 71 ~~-~--~~~ii~vt~~--~~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 71 PE-H--MPYIVFVTAF--DEYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred cc-C--CCEEEEEecc--HHHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 42 2 4567778775 35778999999999999999999999999888754
No 64
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.65 E-value=4.4e-15 Score=136.71 Aligned_cols=118 Identities=27% Similarity=0.468 Sum_probs=108.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+||||||++..+..+...|+..|+.+..+.++.++++.+ ....||+|++|+.||+++|+++++.+++
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlil~D~~mp~~~g~~~~~~i~~ 1026 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV-----------SMQHYDLLITDVNMPNMDGFELTRKLRE 1026 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHh-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 46899999999999999999999999999999999999998 4445779999999999999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
..+ .+|+|++|+..+......+++.|+++|+.||++.++|...++++..
T Consensus 1027 ~~~--~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1027 QNS--SLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred cCC--CCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 765 8999999999999999999999999999999999999998887654
No 65
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.65 E-value=5e-15 Score=123.97 Aligned_cols=116 Identities=30% Similarity=0.448 Sum_probs=106.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcC
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESAS 90 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 90 (187)
|||+||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|..+|+++|+++++.+++..+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~DlVllD~~~p~~~g~~ll~~l~~~~~ 69 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA-----------RGQPDLLITDVRMPGEDGLDLLPQIKKRHP 69 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-----------cCCCCEEEEcCCCCCCCHHHHHHHHHHhCC
Confidence 589999999999999999989999999999999999883 345779999999999999999999998765
Q ss_pred CCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 91 LKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 91 ~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+|+|++++..+......+++.|+++|+.||++.++|...+.++...
T Consensus 70 --~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 70 --QLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred --CCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999887654
No 66
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.64 E-value=4.7e-14 Score=95.86 Aligned_cols=124 Identities=26% Similarity=0.494 Sum_probs=106.2
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCce-EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
..+.++++++++++.....+...|...|+. +..+.++.+++..+. ...+|++++|..+++.+|+++++
T Consensus 2 ~~~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~di~l~d~~~~~~~~~~~~~ 70 (129)
T PRK10610 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-----------AGGFGFVISDWNMPNMDGLELLK 70 (129)
T ss_pred CcccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh-----------ccCCCEEEEcCCCCCCCHHHHHH
Confidence 345579999999999999999999888874 667889999988873 34577999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+++....+.+|+++++...+......+++.|+++|+.||++.+++...++++...
T Consensus 71 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 71 TIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred HHHhCCCcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99986533478999999888888999999999999999999999999888877643
No 67
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.63 E-value=1.7e-14 Score=119.69 Aligned_cols=120 Identities=31% Similarity=0.481 Sum_probs=108.0
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+++++++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.+|+.+|.++++.+++.
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvi~d~~~~~~~g~~l~~~i~~~ 71 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE-----------REQPDIILLDVMMPGMDGFEVCRRLKSD 71 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh-----------hcCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 48999999999999999999888999999999999999984 3456799999999999999999999985
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+...+|+|++++..+......+++.|+++|+.||++.++|..+++.+...
T Consensus 72 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 72 PATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 433478999999999999999999999999999999999999988887654
No 68
>PRK13435 response regulator; Provisional
Probab=99.62 E-value=2.8e-14 Score=101.16 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=99.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCC-CCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l 85 (187)
+++|+++++++.....+...|+..|+.+. .++++.++++.+. ...||++++|..++ +.+|.++++.+
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~dliivd~~~~~~~~~~~~~~~l 73 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGR-----------RRQPDVALVDVHLADGPTGVEVARRL 73 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhh-----------hcCCCEEEEeeecCCCCcHHHHHHHH
Confidence 58999999999999999999998888877 5889999988873 33577999999998 48999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
+.. + .+|+|++++..+ ...++..|+++|+.||++.++|...++++..+..
T Consensus 74 ~~~-~--~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 74 SAD-G--GVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred HhC-C--CCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 764 3 789999987643 2467789999999999999999999998876643
No 69
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.61 E-value=1.9e-15 Score=109.76 Aligned_cols=125 Identities=22% Similarity=0.294 Sum_probs=101.4
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
+....+||+++|++..+..+..-|...||.++. +.++-++.+..... .||+|++|+.+|..+-.+-.-
T Consensus 2 ~~~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~-----------~pDvVildie~p~rd~~e~~~ 70 (194)
T COG3707 2 AAMLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERL-----------QPDVVILDIEMPRRDIIEALL 70 (194)
T ss_pred CccccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhc-----------CCCEEEEecCCCCccHHHHHH
Confidence 345689999999999999999999999997775 67888888887544 456999999999998333222
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKE 143 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~ 143 (187)
.. ..++ ..|||++++++++..+..+++.|+.+|+.||+++..|.-.+.-..+.....
T Consensus 71 ~~-~~~~--~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~~ 127 (194)
T COG3707 71 LA-SENV--ARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEER 127 (194)
T ss_pred Hh-hcCC--CCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHHH
Confidence 22 2233 789999999999999999999999999999999999988887777665443
No 70
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.61 E-value=1.5e-14 Score=126.07 Aligned_cols=121 Identities=16% Similarity=0.161 Sum_probs=104.8
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
.+.++||++||++..+..+...|...||.+..+.++.+++..+. ...||+|++|+.+|+++|+++++.+
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~-----------~~~~Dlvl~d~~lp~~~g~~~l~~l 73 (665)
T PRK13558 5 APTRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE-----------AGEIDCVVADHEPDGFDGLALLEAV 73 (665)
T ss_pred CcceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh-----------ccCCCEEEEeccCCCCcHHHHHHHH
Confidence 44589999999999999999999888999989999999999883 3457799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChH--HHHHHHHHHhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLA--DVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~--~l~~~i~~~~~~ 139 (187)
+...+ .+|||++++..+......++..|+.+|+.||.+.. .+...++....+
T Consensus 74 ~~~~~--~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 74 RQTTA--VPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred HhcCC--CCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 98766 89999999999999999999999999999997643 555555555544
No 71
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.59 E-value=5.9e-14 Score=113.15 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=95.5
Q ss_pred eEEEEEeCCHHHHHHHHHHHH-hCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLK-TSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~-~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++||++||++..+..+...|. ..++.+. .+.++.++++.+. ...||+|++|+.+|+++|+++++.++
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~-----------~~~pDlVllD~~mp~~~G~e~l~~l~ 69 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA-----------AQPPDVILMDLEMPRMDGVEATRRIM 69 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-----------ccCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 379999999999999999995 5578776 5899999999984 34567999999999999999999998
Q ss_pred hhcCCCCCcEEEEeCCCC--hhHHHHHHHhCCCceeeCCC---------ChHHHHHHHHHHhh
Q 046192 87 ESASLKDIPVVIMSSENI--PSRINRCLEEGAEEFFLKPV---------QLADVNKLKPHLMK 138 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~--~~~~~~a~~~ga~~yl~kP~---------~~~~l~~~i~~~~~ 138 (187)
... .+|++++++... .....++++.|+++|+.||+ ..+++...++.+..
T Consensus 70 ~~~---~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 70 AER---PCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred HHC---CCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 854 589999987643 55677899999999999999 44556666655553
No 72
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.56 E-value=1.9e-13 Score=110.92 Aligned_cols=104 Identities=36% Similarity=0.458 Sum_probs=89.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTS-SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
+++||++||++..+..+...|... ++.+. .+.++.+++..+. ...||+|++|+.+|+++|+++++.+
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~-----------~~~~DlVllD~~mp~~dgle~l~~i 71 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIK-----------KLNPDVITLDVEMPVMDGLDALEKI 71 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-----------hhCCCEEEEeCCCCCCChHHHHHHH
Confidence 379999999999999999999876 77777 6899999999883 4457799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCC--ChhHHHHHHHhCCCceeeCCCC
Q 046192 86 KESASLKDIPVVIMSSEN--IPSRINRCLEEGAEEFFLKPVQ 125 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~--~~~~~~~a~~~ga~~yl~kP~~ 125 (187)
++.. .+|+|++++.. .......+++.|+++|+.||++
T Consensus 72 ~~~~---~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 72 MRLR---PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred HHhC---CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 9875 38999998753 3466778999999999999995
No 73
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.47 E-value=9.9e-13 Score=104.63 Aligned_cols=103 Identities=35% Similarity=0.505 Sum_probs=90.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCC-ceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSS-YQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~-~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
+|||+|||.+..|..++++|...+ ++++ .+.++.++++.+...+|| +|.+|+.||.+||+++++.+.
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PD-----------Vi~ld~emp~mdgl~~l~~im 70 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPD-----------VITLDVEMPVMDGLEALRKIM 70 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCC-----------EEEEecccccccHHHHHHHHh
Confidence 699999999999999999999887 5555 589999999999776665 999999999999999999998
Q ss_pred hhcCCCCCcEEEEeCCC--ChhHHHHHHHhCCCceeeCCCC
Q 046192 87 ESASLKDIPVVIMSSEN--IPSRINRCLEEGAEEFFLKPVQ 125 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~--~~~~~~~a~~~ga~~yl~kP~~ 125 (187)
+.. .+|||++++-. ..+...++++.||-||+.||..
T Consensus 71 ~~~---p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 71 RLR---PLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cCC---CCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 874 78999998753 3677888999999999999984
No 74
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.47 E-value=1.6e-12 Score=116.06 Aligned_cols=118 Identities=12% Similarity=0.108 Sum_probs=105.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+|+++||++..+..+...|...||.+..+.++.+++..+... ..+||+|++ .+|+++|.++++.++.
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~---------~~~~DlVll--~~~~~~g~~l~~~l~~ 765 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKG---------PERFDLVLV--DDRLLDEEQAAAALHA 765 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC---------CCCceEEEE--CCCCCCHHHHHHHHHh
Confidence 35899999999999999999999999999999999999988431 124789999 7899999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
..+ .+|||++++..+......++..| ++|+.||++..+|..+++...+.
T Consensus 766 ~~~--~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 766 AAP--TLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred hCC--CCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 776 89999999999999999999999 99999999999999999888764
No 75
>PRK09191 two-component response regulator; Provisional
Probab=99.46 E-value=3.9e-12 Score=98.56 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=97.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l 85 (187)
..+|+++||++..+..+...|+..|+.+. .+.++.++++.+. ...||+|++|..+|+ .+|+++++.+
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~-----------~~~~dlvi~d~~~~~~~~g~e~l~~l 205 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK-----------KTRPGLILADIQLADGSSGIDAVNDI 205 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh-----------ccCCCEEEEecCCCCCCCHHHHHHHH
Confidence 46899999999999999999988888887 5789999998883 345779999999995 7999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
++.. ++|+|++++..+... .+...|+.+|+.||++.++|...++++...
T Consensus 206 ~~~~---~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 206 LKTF---DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred HHhC---CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 8764 789999998765443 344567889999999999999999887654
No 76
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.45 E-value=5e-12 Score=82.48 Aligned_cols=112 Identities=32% Similarity=0.598 Sum_probs=97.8
Q ss_pred EEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCC
Q 046192 12 LAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASL 91 (187)
Q Consensus 12 livd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~ 91 (187)
+++++++..+..+...+...|+.+..+.+..+++..+. ...+|++++|..+++.+|.++++.++...+
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ii~~~~~~~~~~~~~~~~l~~~~~- 68 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA-----------EEKPDLILLDIMMPGMDGLELLRRIRKRGP- 68 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHH-----------hCCCCEEEEecCCCCCchHHHHHHHHHhCC-
Confidence 47899999999999999888988888889999988873 335779999999999999999999998754
Q ss_pred CCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 92 KDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 92 ~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
..|+++++...+......+++.|+.+|+.||++..++...++.+
T Consensus 69 -~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 69 -DIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred -CCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 78999999887788888999999999999999999988877643
No 77
>PRK13557 histidine kinase; Provisional
Probab=99.42 E-value=6e-12 Score=106.51 Aligned_cols=120 Identities=25% Similarity=0.334 Sum_probs=107.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CCHHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MTGYDLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~ 86 (187)
..+|+++++++..+..+...|+..||.+..+.++.+++..+.. ...||++++|..+++ .+|+++++.++
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~----------~~~~d~vi~d~~~~~~~~~~~~~~~l~ 484 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDS----------HPEVDLLFTDLIMPGGMNGVMLAREAR 484 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhc----------CCCceEEEEeccCCCCCCHHHHHHHHH
Confidence 4589999999999999999999889999999999999998732 224779999999997 89999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+..+ ..|+|++++..+......++..|+.+|+.||++.++|...++.+..+
T Consensus 485 ~~~~--~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 485 RRQP--KIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred HhCC--CCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 8766 78999999998888888899999999999999999999999887764
No 78
>PRK10693 response regulator of RpoS; Provisional
Probab=99.37 E-value=8.7e-12 Score=99.19 Aligned_cols=89 Identities=28% Similarity=0.520 Sum_probs=77.6
Q ss_pred EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCC
Q 046192 37 AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGA 116 (187)
Q Consensus 37 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga 116 (187)
.+.++.++++.+.. ..||+|++|..+|+++|+++++.+++..+ .+|+|++++..+.....++++.|+
T Consensus 2 ~a~~g~~al~~l~~-----------~~pDlVL~D~~mp~~~Gle~~~~ir~~~~--~ipiI~lt~~~~~~~~~~al~~Ga 68 (303)
T PRK10693 2 LAANGVDALELLGG-----------FTPDLIICDLAMPRMNGIEFVEHLRNRGD--QTPVLVISATENMADIAKALRLGV 68 (303)
T ss_pred EeCCHHHHHHHHhc-----------CCCCEEEEeCCCCCCCHHHHHHHHHhcCC--CCcEEEEECCCCHHHHHHHHHCCC
Confidence 36788899988843 45679999999999999999999998765 799999999999999999999999
Q ss_pred CceeeCCC-ChHHHHHHHHHHhh
Q 046192 117 EEFFLKPV-QLADVNKLKPHLMK 138 (187)
Q Consensus 117 ~~yl~kP~-~~~~l~~~i~~~~~ 138 (187)
++|+.||+ +.+++...+.....
T Consensus 69 ~dyl~KP~~~~~~L~~~i~~~l~ 91 (303)
T PRK10693 69 QDVLLKPVKDLNRLREMVFACLY 91 (303)
T ss_pred cEEEECCCCcHHHHHHHHHHHhh
Confidence 99999999 48888888776654
No 79
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.27 E-value=6.2e-11 Score=91.42 Aligned_cols=115 Identities=24% Similarity=0.454 Sum_probs=97.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCC-ceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSS-YQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~-~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++|+++||++..++.+..++.... +.+. .+.++.++++.+... .+|++++|+.+|+++|+++...++
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~fldI~~~~~~G~ela~~i~ 70 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL-----------RPDLVFLDIAMPDINGIELAARIR 70 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc-----------CCCeEEEeeccCccchHHHHHHhc
Confidence 689999999999999999998432 3333 578888999988544 566999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
...+ ..+|++++++ .+++..+++..|.||+.||++.++|...+.....
T Consensus 71 ~~~~--~~~Ivfvt~~--~~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~ 118 (244)
T COG3279 71 KGDP--RPAIVFVTAH--DEYAVAAFEVEALDYLLKPISEERLAKTLERLRR 118 (244)
T ss_pred ccCC--CCeEEEEEeh--HHHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHH
Confidence 9755 7788888886 7888889999999999999999999988886554
No 80
>PRK15029 arginine decarboxylase; Provisional
Probab=99.26 E-value=1e-10 Score=102.18 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=90.4
Q ss_pred EEEEEeCCHH--------HHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH--
Q 046192 10 HVLAVDDSII--------DRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-- 79 (187)
Q Consensus 10 ~ilivd~~~~--------~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-- 79 (187)
+||||||+.. .+..+...|+..||+|..+.++.+++..+.. ...||+||+|+.+|+++|+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~----------~~~~DlVLLD~~LPd~dG~~~ 71 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS----------NEAIDCLMFSYQMEHPDEHQN 71 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh----------cCCCcEEEEECCCCCCccchh
Confidence 7999999996 6999999999999999999999999999942 1357799999999999997
Q ss_pred --HHHHHHHhhcCCCCCcEEEEeCCCC--hhHHHHHHHhCCCceeeCCCChHHH-HHHHHHHh
Q 046192 80 --DLLRKIKESASLKDIPVVIMSSENI--PSRINRCLEEGAEEFFLKPVQLADV-NKLKPHLM 137 (187)
Q Consensus 80 --~~~~~l~~~~~~~~~~iI~ls~~~~--~~~~~~a~~~ga~~yl~kP~~~~~l-~~~i~~~~ 137 (187)
+++++||+..+ ++|||++|+..+ ...-...+ --+++|+.+.-+..++ ...+....
T Consensus 72 ~~ell~~IR~~~~--~iPIIlLTar~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (755)
T PRK15029 72 VRQLIGKLHERQQ--NVPVFLLGDREKALAAMDRDLL-ELVDEFAWILEDTADFIAGRAVAAM 131 (755)
T ss_pred HHHHHHHHHhhCC--CCCEEEEEcCCcccccCCHHHH-HhhheEEEecCCCHHHHHHHHHHHH
Confidence 89999998665 899999999875 33333322 3467888887666665 33344443
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.71 E-value=3.6e-07 Score=82.49 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=92.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+|+++|+++..+..+...|...|+.+..+.++.+ + ....||++++|..+|+..+...+.....
T Consensus 536 g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l-----------~~~~~d~il~~~~~~~~~~~~~~~~~~~ 600 (919)
T PRK11107 536 GKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----L-----------PEAHYDILLLGLPVTFREPLTMLHERLA 600 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----h-----------ccCCCCEEEecccCCCCCCHHHHHHHHH
Confidence 468999999999999999999999999998888777 3 2345789999999998776654444333
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.......++++++...+......+.+.|+++|+.||++..++...+....
T Consensus 601 ~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 601 KAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred hhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 33333567888888888888999999999999999999999988876544
No 82
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=98.43 E-value=4.3e-06 Score=56.55 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=76.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCccccccccccccc-EEEEeccCCCCCHHHHHHHHHhh
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVN-LIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~d-lvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
||||||||...+..+..+|+-.|..+..+++.+. .... ....++ ++++....+ ...+.++.+.+.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~-----------~~~~~~~~~v~~g~~~--~~~~~l~~l~~~ 66 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQAD-----------WSSPWEACAVILGSCS--KLAELLKELLKW 66 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhh-----------hhcCCcEEEEEecCch--hHHHHHHHHHhh
Confidence 6899999999999999999999988888765443 2222 122333 334433333 556788888888
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.+ .+||+++........... +-+-+..|++..+|.+++++..
T Consensus 67 ~~--~~Pvlllg~~~~~~~~~n-----vvg~Le~Pl~Y~qLt~~L~~cQ 108 (109)
T PF06490_consen 67 AP--HIPVLLLGEHDSPEELPN-----VVGELEEPLNYPQLTDALHRCQ 108 (109)
T ss_pred CC--CCCEEEECCCCccccccC-----eeEecCCCCCHHHHHHHHHHhc
Confidence 87 999999998765511211 4556888999999999988753
No 83
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.20 E-value=3.1e-06 Score=69.85 Aligned_cols=93 Identities=27% Similarity=0.406 Sum_probs=79.7
Q ss_pred ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHH
Q 046192 33 YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCL 112 (187)
Q Consensus 33 ~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~ 112 (187)
++|..+..+.+++..+ .+..+|.+++|..||+++|+++++.+++... ++++++...+........
T Consensus 13 ~~v~~a~~g~~~l~~~-----------~~~~~~~~lld~~m~~~~~~~~~~~lk~~~~----~~v~~t~~~~~~~~~~~~ 77 (435)
T COG3706 13 KEVATAKKGLIALAIL-----------LDHKPDYKLLDVMMPGMDGFELCRRLKAEPA----TVVMVTALDDSAPRVRGL 77 (435)
T ss_pred hhhhhccchHHHHHHH-----------hcCCCCeEEeecccCCcCchhHHHHHhcCCc----ceEEEEecCCCCcchhHH
Confidence 4566688899999988 5556779999999999999999999998643 388888888888899999
Q ss_pred HhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 113 EEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 113 ~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.+|+++++.||.+...+......+.+..
T Consensus 78 ~~~~~~~l~~~~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 78 KAGADDFLTKPVNDSQLFLRAKSLVRLK 105 (435)
T ss_pred hhhhhhhccCCCChHHHHHhhhhhccch
Confidence 9999999999999999888877777664
No 84
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.87 E-value=0.00017 Score=39.71 Aligned_cols=53 Identities=36% Similarity=0.576 Sum_probs=45.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccC
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM 73 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~ 73 (187)
+++++++++.....+...+...|+.+..+.+..++...+. ...+|++++|..+
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~vi~~~~~ 54 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK-----------EEKPDLILLDIMM 54 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH-----------hcCCCEEEEeccC
Confidence 6899999999999999999888999888899999888873 3356799998754
No 85
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=97.86 E-value=0.0012 Score=45.51 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=76.6
Q ss_pred eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCCC--CHHHHHHHHHhhc
Q 046192 15 DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM--TGYDLLRKIKESA 89 (187)
Q Consensus 15 d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~--~g~~~~~~l~~~~ 89 (187)
|.|..-...+..+|+..||+|... .+.++..+.+... .+|+|.+...++.. ...++++.+++..
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~-----------~~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQE-----------DVDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-----------CCCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 566666677777888899999873 4567777887444 45599998877642 3456788888875
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHH
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKP 134 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~ 134 (187)
+ ....+++......+...++.+.|+++|+-.-.+.++....++
T Consensus 79 ~--~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 A--GDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred C--CCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 5 334455665556677888899999999998888877766553
No 86
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=97.71 E-value=0.00041 Score=47.34 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=78.8
Q ss_pred HHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHHHHHhhcCCCCCcEEE
Q 046192 21 RKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIKESASLKDIPVVI 98 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~~~~~~~~~~iI~ 98 (187)
...+...|+..|+.|+.+.+.++++..+.. ...+++|++++. ++ ....++++.++..+. ++||.+
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~----------~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~--~iPVFl 72 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIES----------FTDIAAVVISWD-GEEEDEAQELLDKIRERNF--GIPVFL 72 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHC----------TTTEEEEEEECH-HHHHHHHHHHHHHHHHHST--T-EEEE
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHh----------CCCeeEEEEEcc-cccchhHHHHHHHHHHhCC--CCCEEE
Confidence 456788888889999999999999999852 345789999987 22 245679999999987 999999
Q ss_pred EeCCCChhHHHHHHHhCCCceeeCCCChHHH-HHHHHHHh
Q 046192 99 MSSENIPSRINRCLEEGAEEFFLKPVQLADV-NKLKPHLM 137 (187)
Q Consensus 99 ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l-~~~i~~~~ 137 (187)
++.....+.+....-..+++|+...-+..++ ...+....
T Consensus 73 ~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa 112 (115)
T PF03709_consen 73 LAERDTTEDLPAEVLGEVDGFIWLFEDTAEFIARRIEAAA 112 (115)
T ss_dssp EESCCHHHCCCHHHHCCESEEEETTTTTHHHHHHHHHHHH
T ss_pred EecCCCcccCCHHHHhhccEEEEecCCCHHHHHHHHHHHH
Confidence 9997766666666667788998887666665 45555444
No 87
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=97.67 E-value=0.0059 Score=42.97 Aligned_cols=119 Identities=13% Similarity=0.104 Sum_probs=85.8
Q ss_pred ceEEEEE----eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCCC--CH
Q 046192 8 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM--TG 78 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~--~g 78 (187)
..+|++. |.|..=...+..+|+..||+|+.. -+.++..+.+... .+|+|.+...+... ..
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~-----------~~d~V~lS~~~~~~~~~~ 71 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET-----------DADAILVSSLYGHGEIDC 71 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-----------CCCEEEEcCccccCHHHH
Confidence 4677777 777777788888889999999873 4567888888544 45599999877653 35
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCC-----CChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSE-----NIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~-----~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.++++.+++..+ .+++|++-..- ...+....+.+.|++.++....+.+++...++...+
T Consensus 72 ~~~~~~L~~~~~-~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 72 RGLREKCIEAGL-GDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred HHHHHHHHhcCC-CCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 568888888754 25555443322 134556788899999999888889888888776654
No 88
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=97.45 E-value=0.0096 Score=41.60 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=77.6
Q ss_pred eCCHHHHHHHHHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C-CHHHHHHHHHhhc
Q 046192 15 DDSIIDRKLIERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M-TGYDLLRKIKESA 89 (187)
Q Consensus 15 d~~~~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~-~g~~~~~~l~~~~ 89 (187)
|-|..-...+...|+..||+|.. ..+.++..+..... .+|+|.+...+.. + .-.++++.|++.+
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~-----------~adii~iSsl~~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEA-----------DVHVVGVSSLAGGHLTLVPALRKELDKLG 81 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc-----------CCCEEEEcCchhhhHHHHHHHHHHHHhcC
Confidence 55566667788888989999986 45778888888544 4558888776643 2 2345777888765
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
. ....|++......+......++|+++|+..-.+..+....+....
T Consensus 82 ~--~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 82 R--PDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred C--CCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 4 233455555445666788999999999998888888777665533
No 89
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=97.22 E-value=0.012 Score=40.03 Aligned_cols=95 Identities=17% Similarity=0.265 Sum_probs=64.7
Q ss_pred eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHHHHHhhc
Q 046192 15 DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIKESA 89 (187)
Q Consensus 15 d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~~~~ 89 (187)
|.|..=...+..+|+..||+|... .+.++..+.+...+ ||+|.+...+.. ....++++.+++..
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~-----------pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED-----------ADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC-----------CCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 556666678888899999999762 35667778885544 559999887554 34667888898875
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
+ ++++|+ +...........+...|+|.|+..
T Consensus 79 ~-~~~~i~-vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 79 L-DDIPVL-VGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred C-CCCeEE-EECCCCChhHHHHHHcCCeEEECC
Confidence 4 245544 554444444457888999777654
No 90
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=96.57 E-value=0.15 Score=35.76 Aligned_cols=106 Identities=10% Similarity=0.076 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC--HHHHHHHHHhhcCCCC
Q 046192 19 IDRKLIERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT--GYDLLRKIKESASLKD 93 (187)
Q Consensus 19 ~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~--g~~~~~~l~~~~~~~~ 93 (187)
.=...+...|+..||+|.. ..+.++.++.+...+ +|+|-+...+...- .-++.+.+++.+. .
T Consensus 16 iGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~-----------adiVglS~l~~~~~~~~~~~~~~l~~~gl--~ 82 (134)
T TIGR01501 16 VGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK-----------ADAILVSSLYGHGEIDCKGLRQKCDEAGL--E 82 (134)
T ss_pred HhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC-----------CCEEEEecccccCHHHHHHHHHHHHHCCC--C
Confidence 3346678888889999986 467888888885444 55999888775432 4457788888764 2
Q ss_pred CcEEEEeCC---CChh---HHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 94 IPVVIMSSE---NIPS---RINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 94 ~~iI~ls~~---~~~~---~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
-+.+++... ...+ ...++.+.|++..+.....++++...+++.+
T Consensus 83 ~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 83 GILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred CCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 344556553 1122 2446889999999988888888888777654
No 91
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=96.48 E-value=0.024 Score=45.53 Aligned_cols=66 Identities=18% Similarity=0.078 Sum_probs=46.6
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEE-EeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVI-MSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~-ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
..+|++|..+- -..+....| ....+++ ..+..+.+.+..+++.|+.+|+.+|++..+|.+.+.++.
T Consensus 20 ~~~v~~~~~~~-------~~~~~~~~p-~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 20 APLVLVDADMA-------EACAAAGLP-RRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCeEEECchhh-------hHHHhccCC-CCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 34899986431 111222222 2444554 445667999999999999999999999999999998874
No 92
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=96.48 E-value=0.062 Score=47.66 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=74.2
Q ss_pred EEEEEeCCH-H-----HHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 10 HVLAVDDSI-I-----DRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 10 ~ilivd~~~-~-----~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
+|++|+++. . ....|.+.|++.||.|..+.+..++...+. . ....++|+++.+.. ...+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~---~~~~~~ 68 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIE-H---------NPRICGVIFDWDEY---SLDLCS 68 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh-c---------ccceeEEEEecccc---hHHHHH
Confidence 677787764 1 145677777888999999999999999885 2 23477999996433 355899
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCC-hHHHHHHHHHHhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ-LADVNKLKPHLMK 138 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~-~~~l~~~i~~~~~ 138 (187)
.+++.+. .+||.++........+....-.-+++|+-...+ .+.+...+.+..+
T Consensus 69 ~~~~~~~--~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~ 122 (713)
T PRK15399 69 DINQLNE--YLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTN 122 (713)
T ss_pred HHHHhCC--CCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHH
Confidence 9999886 999999987543333333333345566554333 2333333444443
No 93
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=96.44 E-value=0.099 Score=39.15 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=72.0
Q ss_pred ceEEEEE----eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCCC--CH
Q 046192 8 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM--TG 78 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~--~g 78 (187)
..+|++. |-|..=...+..+|+..||+|... .+.++..+.+... .||+|.+...+... ..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~-----------~~d~v~lS~~~~~~~~~~ 150 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEH-----------KPDILGLSALMTTTMGGM 150 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-----------CCCEEEEeccccccHHHH
Confidence 4577777 777777788889999999999853 3567888888544 45599999877652 45
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
.++++.+++..+..+++|++=...-+.+ -+-..|||.|-.-.
T Consensus 151 ~~~i~~lr~~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~da 192 (201)
T cd02070 151 KEVIEALKEAGLRDKVKVMVGGAPVNQE---FADEIGADGYAEDA 192 (201)
T ss_pred HHHHHHHHHCCCCcCCeEEEECCcCCHH---HHHHcCCcEEECCH
Confidence 5688899987654466666555544443 45667999887643
No 94
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=96.33 E-value=0.18 Score=35.54 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=81.0
Q ss_pred CceEEEE----EeCCHHHHHHHHHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CC
Q 046192 7 SQFHVLA----VDDSIIDRKLIERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MT 77 (187)
Q Consensus 7 ~~~~ili----vd~~~~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~ 77 (187)
.++||++ .|.|..-...+.+.|+..||+|.. ..+.+|+....- ....|+|.+...-.+ ..
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~-----------~~dv~vIgvSsl~g~h~~l 79 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAV-----------EEDVDVIGVSSLDGGHLTL 79 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHH-----------hcCCCEEEEEeccchHHHH
Confidence 3566665 477777889999999999999986 678889888873 334567777654433 23
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
..++.+.+|+.+. .++. ++....-..+......+.|++.++.--.+..+...-+...
T Consensus 80 ~~~lve~lre~G~-~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~ 136 (143)
T COG2185 80 VPGLVEALREAGV-EDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTR 136 (143)
T ss_pred HHHHHHHHHHhCC-cceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHH
Confidence 5567788888774 2232 3555555666677788899999998877777655444433
No 95
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=96.25 E-value=0.084 Score=46.86 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=66.8
Q ss_pred EEEEEeCCH------HHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 10 HVLAVDDSI------IDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 10 ~ilivd~~~------~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
+|++|+++. .....|...|++.||.|..+.+..++...+. . ....++|+++.+. ....+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~---~~~~~~~ 68 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIE-N---------NARLCGVIFDWDK---YNLELCE 68 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-c---------ccceeEEEEecch---hhHHHHH
Confidence 567776662 1245677778888999999999999999875 2 2347799999543 2255899
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
.+++.+. .+||.++........+....-.-+++|+-.
T Consensus 69 ~~~~~~~--~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (714)
T PRK15400 69 EISKMNE--NLPLYAFANTYSTLDVSLNDLRLQVSFFEY 105 (714)
T ss_pred HHHHhCC--CCCEEEEccccccccCChHHhhhccceeee
Confidence 9998876 999999987543333333333334555543
No 96
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=96.14 E-value=0.12 Score=39.18 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=72.4
Q ss_pred CceEEEEE----eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCCC--C
Q 046192 7 SQFHVLAV----DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM--T 77 (187)
Q Consensus 7 ~~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~--~ 77 (187)
+..+|++. |.|..=...+..+|+..||+|... -..++..+.+...+ ||+|.+...++.. .
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~-----------~~~V~lS~~~~~~~~~ 155 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK-----------ADIIGLSGLLVPSLDE 155 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC-----------CCEEEEccchhccHHH
Confidence 34677777 777777788888889999999873 35777888885444 5599999887652 3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHH---HHHhCCCceeeCC
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINR---CLEEGAEEFFLKP 123 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~---a~~~ga~~yl~kP 123 (187)
..++++.+++.++ +++|++=...-+.+.... +-..|||.|-.-.
T Consensus 156 ~~~~i~~L~~~~~--~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 156 MVEVAEEMNRRGI--KIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred HHHHHHHHHhcCC--CCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 4568888988754 777776555544444432 2346998886644
No 97
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.94 E-value=0.011 Score=53.85 Aligned_cols=48 Identities=23% Similarity=0.162 Sum_probs=40.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEecc
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC 72 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~ 72 (187)
..+||++||++..+..+...|+..|+.|..+.++ . ....||+|++|.+
T Consensus 689 g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~-----------~~~~~Dlvl~D~~ 736 (894)
T PRK10618 689 GVTVLLDITSEEVRKIVTRQLENWGATCITPDER------L-----------ISQEYDIFLTDNP 736 (894)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------c-----------cCCCCCEEEECCC
Confidence 4689999999999999999999999999887642 1 2335889999988
No 98
>PRK15320 transcriptional activator SprB; Provisional
Probab=95.87 E-value=0.028 Score=41.74 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=85.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 10 HVLAVDDSIIDRKLIERLLKTS--SYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~--~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
.|.|-++.=..--.+..++++. +..|..|.+....+..+.. .|| ..+|+.++ | ..-+=+...+++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~-~p~----------a~lil~l~-p-~eh~~lf~~l~~ 69 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD-MPD----------AGLILALN-P-HEHVYLFHALLT 69 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh-CCC----------ceEEEeeC-c-hhHHHHHHHHHH
Confidence 4566666666666788888763 4566678888888877732 222 24444443 2 233345666777
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh--------------hhhhcc-----CCC
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG--------------ISKEIK-----EPN 148 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~--------------~~~~~~-----~~~ 148 (187)
..+ +-||+++++.---....-.--.|+-+|++|. ||...++.-... .++-.. ...
T Consensus 70 ~l~--~~~v~vv~d~l~~~dr~vl~~~g~~~~~l~~----el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (251)
T PRK15320 70 RLQ--NRKVLVVADRLYYIDRCVLQYFGVMDYVLKD----ELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAG 143 (251)
T ss_pred HcC--CCceEEEecceeehhhhhhhhhcchhHHHHH----HHHHHhcccccccCCcHHHHHHhcCccccccceeeeccCC
Confidence 665 8899999986322222222234666677653 222222211110 000000 000
Q ss_pred c------cccccccccccccchhhhhhcccccccCCCCCCCccC
Q 046192 149 N------INNKRKGLEEIDSADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 149 ~------~~~~~~~~~~~~~~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
+ .+.....+..++ ..++.+|.+|+.++++|.|++||
T Consensus 144 ~~~~~~~~~~~~~~~~~~~--~~LSdREIEVL~LLAkG~SNKEI 185 (251)
T PRK15320 144 ETPEEVLFNINQYAWWNLP--PGVTQAKYALLILLSSGHPAIEL 185 (251)
T ss_pred CChHHHhhhccceeeecCC--CCCCHHHHHHHHHHHcCCCHHHH
Confidence 0 001111222233 35899999999999999999997
No 99
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=95.48 E-value=0.52 Score=32.69 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC--CHHHHHHHHHhhcCC
Q 046192 17 SIIDRKLIERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM--TGYDLLRKIKESASL 91 (187)
Q Consensus 17 ~~~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~--~g~~~~~~l~~~~~~ 91 (187)
|..=...+...|+..||+|.- ..+.++.++..... .+|+|.+..-+... ..-++.+.+++...
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~-----------~adiVglS~L~t~~~~~~~~~~~~l~~~gl- 79 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET-----------DADAILVSSLYGHGEIDCKGLREKCDEAGL- 79 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-----------CCCEEEEeccccCCHHHHHHHHHHHHHCCC-
Confidence 334446778888989999986 45778888888544 45599888877653 34568888888754
Q ss_pred CCCcEEEEeCCC--C----hhHHHHHHHhCCCceeeCCCChHHHHHHH
Q 046192 92 KDIPVVIMSSEN--I----PSRINRCLEEGAEEFFLKPVQLADVNKLK 133 (187)
Q Consensus 92 ~~~~iI~ls~~~--~----~~~~~~a~~~ga~~yl~kP~~~~~l~~~i 133 (187)
.++||+ +.... . .+...++.+.|++..+....+++++...+
T Consensus 80 ~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l 126 (128)
T cd02072 80 KDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADL 126 (128)
T ss_pred CCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHH
Confidence 344444 44431 1 33456688999999998877787776554
No 100
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=95.35 E-value=0.41 Score=32.31 Aligned_cols=94 Identities=16% Similarity=0.201 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEec-cCCCC-CHHHHHHHHHhhcC
Q 046192 16 DSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY-CMPGM-TGYDLLRKIKESAS 90 (187)
Q Consensus 16 ~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~-~~~~~-~g~~~~~~l~~~~~ 90 (187)
-++.-...+..+|++.|+++... .+.++..+.+...+ ||+|.+.. ..+.. ...++++.+++..|
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~-----------pd~V~iS~~~~~~~~~~~~l~~~~k~~~p 80 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER-----------PDVVGISVSMTPNLPEAKRLARAIKERNP 80 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT-----------CSEEEEEESSSTHHHHHHHHHHHHHTTCT
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC-----------CcEEEEEccCcCcHHHHHHHHHHHHhcCC
Confidence 45677889999999999988764 34567777775444 55999988 44443 45678888888765
Q ss_pred CCCCcEEEEeCCCChhHHHHHHH--hCCCceeeCC
Q 046192 91 LKDIPVVIMSSENIPSRINRCLE--EGAEEFFLKP 123 (187)
Q Consensus 91 ~~~~~iI~ls~~~~~~~~~~a~~--~ga~~yl~kP 123 (187)
++++++=... -...-...++ .|+|..+.-+
T Consensus 81 --~~~iv~GG~~-~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 81 --NIPIVVGGPH-ATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp --TSEEEEEESS-SGHHHHHHHHHHHTSEEEEEET
T ss_pred --CCEEEEECCc-hhcChHHHhccCcCcceecCCC
Confidence 6666544433 3333344454 5766555443
No 101
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=95.20 E-value=0.35 Score=36.08 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=62.4
Q ss_pred eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCCC--CHHHHHHHHHhhc
Q 046192 15 DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM--TGYDLLRKIKESA 89 (187)
Q Consensus 15 d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~--~g~~~~~~l~~~~ 89 (187)
|.|..=...+..+|+..||+|... ...++..+.+...+ ||+|.+...++.. .-.++++.+++.+
T Consensus 95 d~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~-----------pd~v~lS~~~~~~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 95 DVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK-----------PLMLTGSALMTTTMYGQKDINDKLKEEG 163 (197)
T ss_pred chhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC-----------CCEEEEccccccCHHHHHHHHHHHHHcC
Confidence 344555567777788899999863 45677888885554 5599999877652 3446888888875
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
..++++|++=...-+.+ -+-..|||.|-.-
T Consensus 164 ~~~~v~i~vGG~~~~~~---~~~~~gad~~~~d 193 (197)
T TIGR02370 164 YRDSVKFMVGGAPVTQD---WADKIGADVYGEN 193 (197)
T ss_pred CCCCCEEEEEChhcCHH---HHHHhCCcEEeCC
Confidence 43356666544444333 3457799988653
No 102
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=95.11 E-value=0.18 Score=34.39 Aligned_cols=108 Identities=10% Similarity=0.123 Sum_probs=72.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH-HHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR-KIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~-~l~ 86 (187)
.-+.+.|+.+-.......++|.+.+.+|+.-.+..+. -...+|++++.+-.+--+...+.+ ++.
T Consensus 11 gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~l---------------p~~hYD~~Ll~vavtfr~n~tm~~~~l~ 75 (140)
T COG4999 11 GKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSAL---------------PPAHYDMMLLGVAVTFRENLTMQHERLA 75 (140)
T ss_pred cceeEEecCccHHHHHHHHHHhcCCceEEeccccccc---------------ChhhhceeeecccccccCCchHHHHHHH
Confidence 3578899999999999999999999888765443332 223578999999777644433222 222
Q ss_pred hhcCCCCCcEEEEeCCC-ChhHHHHHHHhCCCceeeCCCChHHHHHH
Q 046192 87 ESASLKDIPVVIMSSEN-IPSRINRCLEEGAEEFFLKPVQLADVNKL 132 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~-~~~~~~~a~~~ga~~yl~kP~~~~~l~~~ 132 (187)
+... -+-.+++.-.+ ....+....+.|+-++++||++..+|.-.
T Consensus 76 ~Al~--mtd~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlpt 120 (140)
T COG4999 76 KALS--MTDFVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPT 120 (140)
T ss_pred HHHh--hhcceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHH
Confidence 2221 33344444333 34456667888999999999999877653
No 103
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=95.01 E-value=0.33 Score=37.52 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=70.9
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++|.+.-.++.....+.+.|...-|.+..+.++++.++.+.. .+..+||+|+... ..-..+...+.+.
T Consensus 1 LsI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~---------~~e~iDCLvle~~---~~~~~~~~~L~e~ 68 (283)
T PF07688_consen 1 LSICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQ---------HREQIDCLVLEQS---PLLPPLFNQLYEQ 68 (283)
T ss_dssp EEEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCC---------TTTT-SEEEEETT---STTHHHHHHHHHC
T ss_pred CeEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHh---------chhccCEEEEecC---CCcHHHHHHHHHc
Confidence 357788888999999999998877999999999999999965 3346999999974 3455688889888
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCcee-----eCCCChHHHHHHHHHHhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFF-----LKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl-----~kP~~~~~l~~~i~~~~~~~ 140 (187)
+- -+|+|++.+..... ..-..|...|- ...-..+++-..+.+++.+.
T Consensus 69 g~--LLPaVil~~~~s~~---~~~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrF 120 (283)
T PF07688_consen 69 GI--LLPAVILGSSESAS---TTSESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRF 120 (283)
T ss_dssp T------EEEES---S-----TTS--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHH
T ss_pred Cc--cccEEEEecCcccc---cCCCCCceeeehHheEccHHHHHHHHHHHHHHHHHH
Confidence 76 78999987732211 11123333342 22334566666666666554
No 104
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=94.94 E-value=0.52 Score=36.74 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=66.9
Q ss_pred HHHHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 046192 22 KLIERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIM 99 (187)
Q Consensus 22 ~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~l 99 (187)
..+++.|.... +-++.........+.+ ....||.|++|......+--++...++......-.|++-+
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~-----------a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRv 76 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVL-----------GLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRV 76 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHH-----------HhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEEC
Confidence 34666676533 2233333344666666 4456899999999998888888887777654334556656
Q ss_pred eCCCChhHHHHHHHhCCCceeeCCCCh-HHHHHHH
Q 046192 100 SSENIPSRINRCLEEGAEEFFLKPVQL-ADVNKLK 133 (187)
Q Consensus 100 s~~~~~~~~~~a~~~ga~~yl~kP~~~-~~l~~~i 133 (187)
.+ .+...+.++++.|+++.+.--++. ++...++
T Consensus 77 p~-~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v 110 (256)
T PRK10558 77 PT-NEPVIIKRLLDIGFYNFLIPFVETAEEARRAV 110 (256)
T ss_pred CC-CCHHHHHHHhCCCCCeeeecCcCCHHHHHHHH
Confidence 55 478899999999999998765554 3333333
No 105
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=94.72 E-value=0.88 Score=31.17 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC-CHHHHHHHHHhhcCCCCC
Q 046192 18 IIDRKLIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM-TGYDLLRKIKESASLKDI 94 (187)
Q Consensus 18 ~~~~~~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~~ 94 (187)
|.....+...+.+.|+.+.. ....++.++.+.. ...||+|.+....+.. ...++++.+|+..| +.
T Consensus 2 plgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~----------~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p--~~ 69 (127)
T cd02068 2 PLGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKE----------LLKPDVVGISLMTSAIYEALELAKIAKEVLP--NV 69 (127)
T ss_pred cchHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHH----------hcCCCEEEEeeccccHHHHHHHHHHHHHHCC--CC
Confidence 34556788888888877655 3455566666632 1356799999866653 46679999999876 66
Q ss_pred cEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 95 PVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 95 ~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+|++=..... ......+.....||+.+---...+.+.++.+..+
T Consensus 70 ~iv~GG~~~t-~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~g 113 (127)
T cd02068 70 IVVVGGPHAT-FFPEEILEEPGVDFVVIGEGEETFLKLLEELEEG 113 (127)
T ss_pred EEEECCcchh-hCHHHHhcCCCCCEEEECCcHHHHHHHHHHHHcC
Confidence 6665443322 1112213334456877754445566666665544
No 106
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.64 E-value=1 Score=34.82 Aligned_cols=112 Identities=19% Similarity=0.193 Sum_probs=70.6
Q ss_pred eEEEEEeCCHHHHHHHHHHH------HhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCC-------
Q 046192 9 FHVLAVDDSIIDRKLIERLL------KTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP------- 74 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l------~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~------- 74 (187)
+++=|+.|+......+...+ -+.||.+. .|.+.....+.+....|+ +| +|
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~-----------~v-----mPlg~pIGs 157 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCA-----------AV-----MPLGSPIGS 157 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCC-----------Ee-----CCCCcCCCC
Confidence 45556665543333333333 23599888 565555555555444443 55 33
Q ss_pred --CCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee-----CCCChHHHHHHHHHHhhh
Q 046192 75 --GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL-----KPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 75 --~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~-----kP~~~~~l~~~i~~~~~~ 139 (187)
+..-.++++.+++. . ++|||+=..-...+.+..+++.|+++.+. |.-++.....+.......
T Consensus 158 g~Gi~~~~~I~~I~e~-~--~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 158 GQGLLNPYNLRIIIER-A--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred CCCCCCHHHHHHHHHh-C--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 12226788888886 3 78999888888999999999999999864 444566665555554433
No 107
>PRK00208 thiG thiazole synthase; Reviewed
Probab=94.52 E-value=1.1 Score=34.66 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=70.6
Q ss_pred eEEEEEeCCHHHHHHHHHHH------HhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCC-------
Q 046192 9 FHVLAVDDSIIDRKLIERLL------KTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP------- 74 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l------~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~------- 74 (187)
+++=|+.|+......+...+ -+.||.+. .|.+.-...+.+....|+ +| +|
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~-----------~v-----mPlg~pIGs 157 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCA-----------AV-----MPLGAPIGS 157 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCC-----------Ee-----CCCCcCCCC
Confidence 55556665543332222222 23599888 565555555555444443 55 33
Q ss_pred --CCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee-----CCCChHHHHHHHHHHhhh
Q 046192 75 --GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL-----KPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 75 --~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~-----kP~~~~~l~~~i~~~~~~ 139 (187)
+..-.++++.+++. . ++|||+=..-...+.+..+++.|+++.+. |.-++..+..........
T Consensus 158 g~gi~~~~~i~~i~e~-~--~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 158 GLGLLNPYNLRIIIEQ-A--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred CCCCCCHHHHHHHHHh-c--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 12225788888886 3 78999988889999999999999999764 444566665555554433
No 108
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=94.45 E-value=0.83 Score=35.87 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=64.4
Q ss_pred HHHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEe
Q 046192 23 LIERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMS 100 (187)
Q Consensus 23 ~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls 100 (187)
.+++.|.... +-.+.........+.+ ....||.|++|..-...+--++...++........|++-+.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~-----------a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIA-----------ATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHH-----------HHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 4666665432 2233333445666666 34458999999999988877777777776543345555554
Q ss_pred CCCChhHHHHHHHhCCCceeeCCCChHH
Q 046192 101 SENIPSRINRCLEEGAEEFFLKPVQLAD 128 (187)
Q Consensus 101 ~~~~~~~~~~a~~~ga~~yl~kP~~~~~ 128 (187)
..+...+.++++.||++.+.--++..+
T Consensus 77 -~~~~~~i~r~LD~GA~GIivP~V~sae 103 (267)
T PRK10128 77 -EGSKPLIKQVLDIGAQTLLIPMVDTAE 103 (267)
T ss_pred -CCCHHHHHHHhCCCCCeeEecCcCCHH
Confidence 457889999999999999987766544
No 109
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.34 E-value=0.9 Score=29.69 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=55.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEe--CCHH-HHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAV--DSGN-KALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~--~~~~-~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
+||||+.++.....++..+++.|+..... ..+. .....+.. .-...|+||+=++.-.-+....++..-
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~---------~i~~aD~VIv~t~~vsH~~~~~vk~~a 71 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPS---------KIKKADLVIVFTDYVSHNAMWKVKKAA 71 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHH---------hcCCCCEEEEEeCCcChHHHHHHHHHH
Confidence 58999998888899999999999877776 2111 11111211 123467888877666655555555554
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHH
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCL 112 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~ 112 (187)
+.. +.|+++..+.+ ...+.+++
T Consensus 72 kk~---~ip~~~~~~~~-~~~l~~~l 93 (97)
T PF10087_consen 72 KKY---GIPIIYSRSRG-VSSLERAL 93 (97)
T ss_pred HHc---CCcEEEECCCC-HHHHHHHH
Confidence 433 78998776443 33444443
No 110
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=94.28 E-value=1.1 Score=40.06 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=77.4
Q ss_pred ceEEEEE----eCCHHHHHHHHHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C-CH
Q 046192 8 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M-TG 78 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~-~g 78 (187)
..+|++. |.|..-...+...|+..||+|.. ..+.++..+..... .+|+|++...+.. . ..
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~-----------~a~ivvlcs~d~~~~e~~ 650 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEN-----------DVHVVGVSSLAAGHKTLV 650 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHc-----------CCCEEEEeccchhhHHHH
Confidence 3455533 33455556777888888999964 34677888887443 4558887765544 2 35
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
-.+++.|++.+. .+++ |++......+....+.+.|+++|+..-.+..++...+.+.+.
T Consensus 651 ~~l~~~Lk~~G~-~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 651 PALIEALKKLGR-EDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred HHHHHHHHhcCC-CCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 578888888753 1233 345544234445677889999999988888887766666553
No 111
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.20 E-value=1.7 Score=32.91 Aligned_cols=97 Identities=14% Similarity=0.228 Sum_probs=63.4
Q ss_pred HHHHHHhCCc-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 24 IERLLKTSSY-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 24 l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
+...|.+.+. -|....+.++++...+..... -++ ++++.+...++.+.++.+++..| + -+|....-
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~--------Gi~--~iEitl~~~~~~~~I~~l~~~~p--~-~~IGAGTV 74 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAG--------GLP--VLEVTLRTPAALEAIRLIAKEVP--E-ALIGAGTV 74 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHc--------CCC--EEEEecCCccHHHHHHHHHHHCC--C-CEEEEeec
Confidence 4455566663 444567888888877654331 233 44555666689999999998775 4 34555666
Q ss_pred CChhHHHHHHHhCCCceeeCCCChHHHHHHHH
Q 046192 103 NIPSRINRCLEEGAEEFFLKPVQLADVNKLKP 134 (187)
Q Consensus 103 ~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~ 134 (187)
.+.+....++++||+-.++ |.-..++.+..+
T Consensus 75 l~~~~a~~a~~aGA~Fivs-P~~~~~vi~~a~ 105 (212)
T PRK05718 75 LNPEQLAQAIEAGAQFIVS-PGLTPPLLKAAQ 105 (212)
T ss_pred cCHHHHHHHHHcCCCEEEC-CCCCHHHHHHHH
Confidence 7789999999999984444 544445554433
No 112
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=94.19 E-value=1.2 Score=34.59 Aligned_cols=93 Identities=17% Similarity=0.133 Sum_probs=63.4
Q ss_pred HHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeC
Q 046192 24 IERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 24 l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
+++.|.... +-++.........+.+ ....||.|++|..-...+--++...++......-.|++-+.+
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~-----------a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVL-----------GLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHH-----------HhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 445554432 3333333445666666 445689999999999888888888887765433456666655
Q ss_pred CCChhHHHHHHHhCCCceeeCCCChHH
Q 046192 102 ENIPSRINRCLEEGAEEFFLKPVQLAD 128 (187)
Q Consensus 102 ~~~~~~~~~a~~~ga~~yl~kP~~~~~ 128 (187)
.+...+.++++.|+++.+.--++..+
T Consensus 72 -~~~~~i~r~LD~Ga~gIivP~v~tae 97 (249)
T TIGR03239 72 -NEPVIIKRLLDIGFYNFLIPFVESAE 97 (249)
T ss_pred -CCHHHHHHHhcCCCCEEEecCcCCHH
Confidence 57889999999999999886555443
No 113
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=93.19 E-value=1.9 Score=33.47 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=65.4
Q ss_pred HHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeC
Q 046192 24 IERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 24 l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
+++.|..-. +-++.........+.+ ....+|.|++|..-...+.-++...++........+++-+.+
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~-----------~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~ 71 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEIC-----------AGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAI 71 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHH-----------HhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCC
Confidence 445554422 2333333445566666 344588999999988888888888777753322455555544
Q ss_pred CCChhHHHHHHHhCCCceeeC-CCChHHHHHHHHHHh
Q 046192 102 ENIPSRINRCLEEGAEEFFLK-PVQLADVNKLKPHLM 137 (187)
Q Consensus 102 ~~~~~~~~~a~~~ga~~yl~k-P~~~~~l~~~i~~~~ 137 (187)
.+...+..+++.|+++.+.- --+.++...+++.+.
T Consensus 72 -~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 72 -GDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATR 107 (249)
T ss_pred -CCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 46678999999999998654 445666555554443
No 114
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=93.17 E-value=2.3 Score=35.27 Aligned_cols=112 Identities=14% Similarity=0.062 Sum_probs=66.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEE---------------EeCCHHHHHHHHhccCcccccccccccccEEEEecc
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVT---------------AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC 72 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~---------------~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~ 72 (187)
..+++|+.+++.....+.+.+++.|+... ...+..+....+. ..|++++--.
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~-------------~aDi~~v~~S 328 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA-------------IADIAFVGGS 328 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH-------------hCCEEEECCC
Confidence 46778888888765677777777665322 2222334444442 2457666433
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 73 MPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 73 ~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.....|..+++.+.. .+|||.-....+.....+.+. ..+++..|-+.++|.+.+..++..
T Consensus 329 ~~e~~g~~~lEAma~-----G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~~ 388 (425)
T PRK05749 329 LVKRGGHNPLEPAAF-----GVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLTD 388 (425)
T ss_pred cCCCCCCCHHHHHHh-----CCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhcC
Confidence 323345556666654 778986433233333333332 235777788999999999888764
No 115
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.77 E-value=3.3 Score=31.33 Aligned_cols=95 Identities=14% Similarity=0.123 Sum_probs=63.0
Q ss_pred HHHHhCCc-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCC--cEEEEeCC
Q 046192 26 RLLKTSSY-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDI--PVVIMSSE 102 (187)
Q Consensus 26 ~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~--~iI~ls~~ 102 (187)
+.|.+.+. -|....+.+++....+..... .+=++.+.+..-++++.++.+++..+ +- -+|-...-
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~~~----------Gi~~iEit~~~~~a~~~i~~l~~~~~--~~p~~~vGaGTV 75 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVIKG----------GIKAIEVTYTNPFASEVIKELVELYK--DDPEVLIGAGTV 75 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHC----------CCCEEEEECCCccHHHHHHHHHHHcC--CCCCeEEeeeeC
Confidence 45555553 344466777777766544321 15566777777778999999988763 22 24456666
Q ss_pred CChhHHHHHHHhCCCceeeCCCChHHHHHHH
Q 046192 103 NIPSRINRCLEEGAEEFFLKPVQLADVNKLK 133 (187)
Q Consensus 103 ~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i 133 (187)
.+.+.+..+.++||+ |+.-|.-..++.+..
T Consensus 76 ~~~~~~~~a~~aGA~-FivsP~~~~~v~~~~ 105 (213)
T PRK06552 76 LDAVTARLAILAGAQ-FIVSPSFNRETAKIC 105 (213)
T ss_pred CCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 789999999999998 666676666665553
No 116
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=92.34 E-value=3.1 Score=31.34 Aligned_cols=61 Identities=15% Similarity=0.324 Sum_probs=41.5
Q ss_pred EeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHH
Q 046192 69 TDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLK 133 (187)
Q Consensus 69 ~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i 133 (187)
+.+.+...+..+.++.+++..+ ++ +|-...-.+.+.+..+.++||+ |+.-|....++.+..
T Consensus 37 iEit~~t~~a~~~i~~l~~~~~--~~-~vGAGTVl~~~~a~~a~~aGA~-FivsP~~~~~v~~~~ 97 (204)
T TIGR01182 37 LEVTLRTPVALDAIRLLRKEVP--DA-LIGAGTVLNPEQLRQAVDAGAQ-FIVSPGLTPELAKHA 97 (204)
T ss_pred EEEeCCCccHHHHHHHHHHHCC--CC-EEEEEeCCCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 3344444567788889988765 43 4445666789999999999998 556666665655543
No 117
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=92.25 E-value=0.078 Score=38.76 Aligned_cols=86 Identities=8% Similarity=0.033 Sum_probs=50.4
Q ss_pred CCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccccccccccccchhhhhhccc
Q 046192 93 DIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRKGLEEIDSADRTRTRLND 172 (187)
Q Consensus 93 ~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 172 (187)
+..||++...+......+. -.-..-|+.+.-+.+++.....-++....-...-+...-. -.....+++||.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~-~~~~~~~iyr~d~v~~i~~k~~~il~~~al~~~~~~~~~~-------~~~~~~LSpRErE 140 (198)
T PRK15201 69 QLRVIICNKCDKEKLMFRP-CLYMLPHIYREDDVEEITRKMILILHKRALRHSVPSGICH-------YCTTRHFSVTERH 140 (198)
T ss_pred eeEEEEeccccchhhhhch-hHhhcchhhccccHHHHHHHHHHHHHHHHHHhhCCchhcc-------ccCCCCCCHHHHH
Confidence 5567766665544443222 1234567777778888776665555332211111110101 1122348999999
Q ss_pred ccccCCCCCCCccC
Q 046192 173 TIDINNDGLPDLEI 186 (187)
Q Consensus 173 ~l~l~~~g~~~~ei 186 (187)
|+.++++|+|++||
T Consensus 141 VLrLLAqGkTnKEI 154 (198)
T PRK15201 141 LLKLIASGYHLSET 154 (198)
T ss_pred HHHHHHCCCCHHHH
Confidence 99999999999997
No 118
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=91.57 E-value=1.2 Score=32.94 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=55.2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC-CHHHHHHHHHh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM-TGYDLLRKIKE 87 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~-~g~~~~~~l~~ 87 (187)
.+||+||+...+-.-|.++|.+.|.++....+.......+...+ ||.|++.---..- +.-...+.|++
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~-----------pd~iviSPGPG~P~d~G~~~~~i~~ 70 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALK-----------PDAIVISPGPGTPKDAGISLELIRR 70 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcC-----------CCEEEEcCCCCChHHcchHHHHHHH
Confidence 57999999999999999999999988877655433333443333 4588887532211 11123333443
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHH
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCL 112 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~ 112 (187)
.. .++||+-+.-. ...+..++
T Consensus 71 ~~--~~~PiLGVCLG--HQai~~~f 91 (191)
T COG0512 71 FA--GRIPILGVCLG--HQAIAEAF 91 (191)
T ss_pred hc--CCCCEEEECcc--HHHHHHHh
Confidence 32 27899887753 33444444
No 119
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=91.29 E-value=5 Score=30.18 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=58.2
Q ss_pred HHHHhCCc-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 046192 26 RLLKTSSY-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENI 104 (187)
Q Consensus 26 ~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~ 104 (187)
+.|.+.+. -|....+.+++.+.++..... - +=++.+.+...++.+.++.+++..+ ..-+|-...--+
T Consensus 5 ~~l~~~~~~~v~r~~~~~~~~~~~~a~~~g--------G--i~~iEvt~~~~~~~~~i~~l~~~~~--~~~~iGaGTV~~ 72 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALIEA--------G--FRAIEIPLNSPDPFDSIAALVKALG--DRALIGAGTVLS 72 (206)
T ss_pred hHHHhCCEEEEEeCCCHHHHHHHHHHHHHC--------C--CCEEEEeCCCccHHHHHHHHHHHcC--CCcEEeEEecCC
Confidence 44444442 333345666666655433221 1 3355565666678888888888764 323444555667
Q ss_pred hhHHHHHHHhCCCceeeCCCChHHHHHHHH
Q 046192 105 PSRINRCLEEGAEEFFLKPVQLADVNKLKP 134 (187)
Q Consensus 105 ~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~ 134 (187)
.+.+..+.++||+ |+.-|....++.+..+
T Consensus 73 ~~~~~~a~~aGA~-fivsp~~~~~v~~~~~ 101 (206)
T PRK09140 73 PEQVDRLADAGGR-LIVTPNTDPEVIRRAV 101 (206)
T ss_pred HHHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 8899999999996 5555766666655544
No 120
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=91.18 E-value=5.1 Score=30.84 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=61.4
Q ss_pred HHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH-----HHHHHHHHhhcCCCCCcEEE
Q 046192 25 ERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG-----YDLLRKIKESASLKDIPVVI 98 (187)
Q Consensus 25 ~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g-----~~~~~~l~~~~~~~~~~iI~ 98 (187)
.+.|-+.||.|.. +++..-..+.+...-. -.++-+-.|=++| ...++.|++.. ++|||+
T Consensus 116 ae~Lv~eGF~VlPY~~~D~v~akrL~d~Gc------------aavMPlgsPIGSg~Gi~n~~~l~~i~~~~---~vPvIv 180 (247)
T PF05690_consen 116 AEILVKEGFVVLPYCTDDPVLAKRLEDAGC------------AAVMPLGSPIGSGRGIQNPYNLRIIIERA---DVPVIV 180 (247)
T ss_dssp HHHHHHTT-EEEEEE-S-HHHHHHHHHTT-------------SEBEEBSSSTTT---SSTHHHHHHHHHHG---SSSBEE
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHCCC------------CEEEecccccccCcCCCCHHHHHHHHHhc---CCcEEE
Confidence 4455678999987 4444444445433222 3445555553333 35778888765 899999
Q ss_pred EeCCCChhHHHHHHHhCCCceeeC-----CCChHHHHHHHHHHhhh
Q 046192 99 MSSENIPSRINRCLEEGAEEFFLK-----PVQLADVNKLKPHLMKG 139 (187)
Q Consensus 99 ls~~~~~~~~~~a~~~ga~~yl~k-----P~~~~~l~~~i~~~~~~ 139 (187)
=..-..+..+..|++.|+++.|.- --++....++.+.....
T Consensus 181 DAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 181 DAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp ES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHH
Confidence 888899999999999999998764 44677776666666544
No 121
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=91.09 E-value=5.1 Score=34.35 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhCC-ceEEEeC------CHHHHHHHHhccCcccccccccccccEEEEeccCCCC-CHHHHHHHHHhh
Q 046192 17 SIIDRKLIERLLKTSS-YQVTAVD------SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM-TGYDLLRKIKES 88 (187)
Q Consensus 17 ~~~~~~~l~~~l~~~~-~~v~~~~------~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~-~g~~~~~~l~~~ 88 (187)
.|.....+...|++.| ++|.... +.++..+.+... .||+|.+....+.. ...++++.+|+.
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~-----------~pdvVgis~~t~~~~~a~~~~~~~k~~ 89 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH-----------CPDLVLITAITPAIYIACETLKFARER 89 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc-----------CcCEEEEecCcccHHHHHHHHHHHHHH
Confidence 5777889999998889 5776642 233444555333 45699998766654 356788889988
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHH-hCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLE-EGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~-~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.| +.+||+ .+..-.....+++. ...-||+..--....+.+.++.+..+.
T Consensus 90 ~P--~~~iV~-GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~g~ 139 (497)
T TIGR02026 90 LP--NAIIVL-GGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALENHN 139 (497)
T ss_pred CC--CCEEEE-cCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHcCC
Confidence 76 666664 33322222334443 344578888766666777777776553
No 122
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.09 E-value=3.2 Score=27.57 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=58.6
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
.+|+++|.++...+.+ ...|+.+... .+..+.++.+.. ...+.+++...-. .....++..+++
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~i-----------~~a~~vv~~~~~d-~~n~~~~~~~r~ 85 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAGI-----------EKADAVVILTDDD-EENLLIALLARE 85 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTTG-----------GCESEEEEESSSH-HHHHHHHHHHHH
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcCc-----------cccCEEEEccCCH-HHHHHHHHHHHH
Confidence 5788888888764433 3345655553 344555666533 3455888877522 445567778888
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..+ ..++++... +........+.|++..+.
T Consensus 86 ~~~--~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 86 LNP--DIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp HTT--TSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred HCC--CCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 776 677776665 467777778889986653
No 123
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=91.06 E-value=4 Score=34.45 Aligned_cols=108 Identities=16% Similarity=0.255 Sum_probs=68.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+++|+++.+. ++.+.+..+.........-+.++....+. ..|++++-.. ...-|..+++.+..
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~-------------~aDv~V~pS~-~E~~g~~vlEAmA~ 354 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYA-------------SGDVFVMPSE-SETLGFVVLEAMAS 354 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHH-------------HCCEEEECCc-ccccCcHHHHHHHc
Confidence 467788887664 34555555443333333444566666663 2457775432 34446667777654
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHh---CCCceeeCCCChHHHHHHHHHHhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEE---GAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~---ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+|||...... ..+.... |-.+++..|-+.+++.+++..++..
T Consensus 355 -----G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 355 -----GVPVVAARAGG----IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD 400 (465)
T ss_pred -----CCCEEEcCCCC----cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 78898544332 2334455 8889999999999999999888754
No 124
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=90.27 E-value=3.5 Score=31.28 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=62.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~l~ 86 (187)
.-+|||=+.-.=....+.+.|.+.|-+|..|.-.++.++.....+|+ +--.++|. .+.++. ++.++++
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~---------~~t~v~Dv--~d~~~~~~lvewLk 73 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPE---------IHTEVCDV--ADRDSRRELVEWLK 73 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcc---------hheeeecc--cchhhHHHHHHHHH
Confidence 45788888888888889999999999999999889999988877775 33555665 344444 5999999
Q ss_pred hhcCCCCCcEEEEeC
Q 046192 87 ESASLKDIPVVIMSS 101 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~ 101 (187)
+.+| ++-|++=-+
T Consensus 74 k~~P--~lNvliNNA 86 (245)
T COG3967 74 KEYP--NLNVLINNA 86 (245)
T ss_pred hhCC--chheeeecc
Confidence 9998 887776433
No 125
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.70 E-value=6.2 Score=29.65 Aligned_cols=61 Identities=10% Similarity=0.200 Sum_probs=40.8
Q ss_pred EeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHH
Q 046192 69 TDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLK 133 (187)
Q Consensus 69 ~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i 133 (187)
+++.+..-++++.++.+++..+ + -+|-...-.+.+...++.++||+ |+.-|.-..++.+..
T Consensus 33 iEit~~tp~a~~~I~~l~~~~~--~-~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~~a 93 (201)
T PRK06015 33 IEITLRTPAALDAIRAVAAEVE--E-AIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLAAA 93 (201)
T ss_pred EEEeCCCccHHHHHHHHHHHCC--C-CEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 3444444557777888887664 3 34556666788999999999998 666666666655543
No 126
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.38 E-value=5.7 Score=34.93 Aligned_cols=55 Identities=9% Similarity=0.166 Sum_probs=38.7
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
+.+++++-..-+ .+...++...|+..| +.+|++-+. +.+......+.|++..+.-
T Consensus 464 ~A~~vv~~~~d~-~~n~~i~~~~r~~~p--~~~IiaRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 464 KAEAIVITCNEP-EDTMKIVELCQQHFP--HLHILARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred cCCEEEEEeCCH-HHHHHHHHHHHHHCC--CCeEEEEeC--CHHHHHHHHhCCCCEEEcc
Confidence 456777776543 334567788888876 888876554 5788888899999866543
No 127
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=88.95 E-value=4.4 Score=30.27 Aligned_cols=64 Identities=11% Similarity=0.213 Sum_probs=40.9
Q ss_pred EEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHH
Q 046192 66 LIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLK 133 (187)
Q Consensus 66 lvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i 133 (187)
+=++++.+...++.+.++.+++..| ++ +|-...-.+.+.+..|.++||+ |+.-|.-.+++.+..
T Consensus 34 i~~iEiT~~t~~a~~~I~~l~~~~p--~~-~vGAGTV~~~e~a~~a~~aGA~-FivSP~~~~~v~~~~ 97 (196)
T PF01081_consen 34 IRAIEITLRTPNALEAIEALRKEFP--DL-LVGAGTVLTAEQAEAAIAAGAQ-FIVSPGFDPEVIEYA 97 (196)
T ss_dssp --EEEEETTSTTHHHHHHHHHHHHT--TS-EEEEES--SHHHHHHHHHHT-S-EEEESS--HHHHHHH
T ss_pred CCEEEEecCCccHHHHHHHHHHHCC--CC-eeEEEeccCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 4455666666678889999988875 53 5556777889999999999998 555555555554443
No 128
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=88.82 E-value=8.9 Score=29.50 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=65.1
Q ss_pred HHHHHhCCceEEEe-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH-----HHHHHHHHhhcCCCCCcEEE
Q 046192 25 ERLLKTSSYQVTAV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG-----YDLLRKIKESASLKDIPVVI 98 (187)
Q Consensus 25 ~~~l~~~~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g-----~~~~~~l~~~~~~~~~~iI~ 98 (187)
.+.|-+.||.|..+ ++..-..+.+...-. ..++-+.-|=++| ...++.|++.. ++|||+
T Consensus 123 ae~Lv~eGF~VlPY~~dD~v~arrLee~Gc------------aavMPl~aPIGSg~G~~n~~~l~iiie~a---~VPviV 187 (262)
T COG2022 123 AEQLVKEGFVVLPYTTDDPVLARRLEEAGC------------AAVMPLGAPIGSGLGLQNPYNLEIIIEEA---DVPVIV 187 (262)
T ss_pred HHHHHhCCCEEeeccCCCHHHHHHHHhcCc------------eEeccccccccCCcCcCCHHHHHHHHHhC---CCCEEE
Confidence 44555679988874 333334444433222 4555555554443 35677787765 899999
Q ss_pred EeCCCChhHHHHHHHhCCCceeeC-----CCChHHHHHHHHHHhhh
Q 046192 99 MSSENIPSRINRCLEEGAEEFFLK-----PVQLADVNKLKPHLMKG 139 (187)
Q Consensus 99 ls~~~~~~~~~~a~~~ga~~yl~k-----P~~~~~l~~~i~~~~~~ 139 (187)
=..-..+..+..+++.|+|+.+.- --++....++.......
T Consensus 188 DAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~A 233 (262)
T COG2022 188 DAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVEA 233 (262)
T ss_pred eCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHHH
Confidence 998899999999999999998764 23455555555555433
No 129
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=88.67 E-value=5.3 Score=26.57 Aligned_cols=106 Identities=19% Similarity=0.309 Sum_probs=62.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHh-CCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKT-SSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~-~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
+||.+|+--...+..+..+... .++.+.. +....+..+..... ..+. +.-| .+.+-
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~----------~~~~-~~~~-----------~~~ll 58 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK----------YGIP-VYTD-----------LEELL 58 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TTSE-EESS-----------HHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH----------hccc-chhH-----------HHHHH
Confidence 4788888877777777777766 4566664 44444333333211 1112 2222 23333
Q ss_pred h-hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHHhh
Q 046192 87 E-SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHLMK 138 (187)
Q Consensus 87 ~-~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~~~ 138 (187)
+ ..+ +.-+|........+.+..+++.|.+=|+-||+ +.+++.+.++...+
T Consensus 59 ~~~~~--D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 59 ADEDV--DAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp HHTTE--SEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HhhcC--CEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 3 222 33333334445677889999999999999999 67777666655543
No 130
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=88.63 E-value=8.7 Score=28.96 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=55.0
Q ss_pred HHHHHHHHh-CCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEecc-------CCCCCHHHHHHHHHhhcCCC
Q 046192 22 KLIERLLKT-SSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC-------MPGMTGYDLLRKIKESASLK 92 (187)
Q Consensus 22 ~~l~~~l~~-~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~-------~~~~~g~~~~~~l~~~~~~~ 92 (187)
..+.+..++ .+..+.. +.+.+++.... ...+|++.+... .......++++.+++..
T Consensus 108 ~~~i~~~~~~~~i~vi~~v~t~ee~~~a~------------~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--- 172 (221)
T PRK01130 108 AELVKRIKEYPGQLLMADCSTLEEGLAAQ------------KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--- 172 (221)
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHH------------HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---
Confidence 344445555 5554443 56666664433 223667755321 11233577888888754
Q ss_pred CCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 93 DIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 93 ~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
++|++....-.+.+.+..++..||++.+.
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 68999888888899999999999998754
No 131
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=88.34 E-value=7.3 Score=31.42 Aligned_cols=108 Identities=10% Similarity=0.210 Sum_probs=66.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
..+++++++.+. ...+...++..+. .+.......+..+.+. ..|++++-. ....-|..+++.+
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-------------~adi~v~pS-~~Eg~~~~~lEAm 293 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQ-------------ALDLFVLPS-LAEGISNTILEAM 293 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHH-------------hcCEEEecc-ccccCchHHHHHH
Confidence 467788877654 3556666666553 2333233334444442 245666532 2344566777777
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.. .+|+|+..... ..+.+..|..+++..|-+.+++.+.+..++..
T Consensus 294 a~-----G~Pvv~s~~~g----~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 294 AS-----GLPVIATAVGG----NPELVQHGVTGALVPPGDAVALARALQPYVSD 338 (374)
T ss_pred Hc-----CCCEEEcCCCC----cHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 64 77897633322 34455677889999999999999999888753
No 132
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.99 E-value=12 Score=32.50 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=33.8
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
..|.+++-..-+.. -..++..+|+..+ +.+++.-+. +.+......+.|+|. +..|
T Consensus 481 ~a~~viv~~~~~~~-~~~iv~~~~~~~~--~~~iiar~~--~~~~~~~l~~~Gad~-vv~p 535 (558)
T PRK10669 481 CARWLLLTIPNGYE-AGEIVASAREKRP--DIEIIARAH--YDDEVAYITERGANQ-VVMG 535 (558)
T ss_pred ccCEEEEEcCChHH-HHHHHHHHHHHCC--CCeEEEEEC--CHHHHHHHHHcCCCE-EECh
Confidence 46677776543322 2245566777765 778887665 455666667889884 4444
No 133
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=87.89 E-value=14 Score=30.32 Aligned_cols=110 Identities=11% Similarity=0.155 Sum_probs=64.5
Q ss_pred ceEEEEEeCCHH--------HHHHHHHHHHhCCceEEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC
Q 046192 8 QFHVLAVDDSII--------DRKLIERLLKTSSYQVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT 77 (187)
Q Consensus 8 ~~~ilivd~~~~--------~~~~l~~~l~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~ 77 (187)
.++.+|+++.+. ....+.+.....+..+... -+.++....+. ..|++++-......-
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~-------------~aDv~v~pS~~~E~f 290 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYP-------------LADLVVVPSQVEEAF 290 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH-------------hCCEEEeCCCCcccc
Confidence 456677765331 2233444444444334332 23455555552 246877755444444
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce-eeCCCChHHHHHHHHHHhhh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF-FLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y-l~kP~~~~~l~~~i~~~~~~ 139 (187)
|..+++.+.. .+|||...... ..+.+..|.++| +..|.+.+++.+.+..++..
T Consensus 291 ~~~~lEAma~-----G~PVI~s~~gg----~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 291 CMVAVEAMAA-----GKPVLASTKGG----ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred ccHHHHHHHc-----CCCEEEeCCCC----cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 5566666654 78888654432 334456678888 56788999999999888864
No 134
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.78 E-value=10 Score=28.89 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=58.6
Q ss_pred HHHHHHhCC-ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCc--EEEEe
Q 046192 24 IERLLKTSS-YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIP--VVIMS 100 (187)
Q Consensus 24 l~~~l~~~~-~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~--iI~ls 100 (187)
+.+.|.+.+ .-|....+.+++...++..... - +=++++.+..-++.+.++.+++.... ..| +|-..
T Consensus 8 ~~~~l~~~~vi~Vvr~~~~~~a~~~~~al~~g--------G--i~~iEiT~~tp~a~~~i~~l~~~~~~-~~p~~~vGaG 76 (222)
T PRK07114 8 VLTAMKATGMVPVFYHADVEVAKKVIKACYDG--------G--ARVFEFTNRGDFAHEVFAELVKYAAK-ELPGMILGVG 76 (222)
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHC--------C--CCEEEEeCCCCcHHHHHHHHHHHHHh-hCCCeEEeeE
Confidence 334455555 3344466777777766543221 1 44556666666777888877643211 112 44456
Q ss_pred CCCChhHHHHHHHhCCCceeeCCCChHHHHHHH
Q 046192 101 SENIPSRINRCLEEGAEEFFLKPVQLADVNKLK 133 (187)
Q Consensus 101 ~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i 133 (187)
.-.+.+.+..+.++||+ |+.-|.-..++.+..
T Consensus 77 TVl~~e~a~~a~~aGA~-FiVsP~~~~~v~~~~ 108 (222)
T PRK07114 77 SIVDAATAALYIQLGAN-FIVTPLFNPDIAKVC 108 (222)
T ss_pred eCcCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 66789999999999998 555566665655543
No 135
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=87.27 E-value=2.5 Score=31.70 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=35.5
Q ss_pred CCcEEEEeC------CCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 93 DIPVVIMSS------ENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 93 ~~~iI~ls~------~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.+|||+++= +....++..+.++||++|+.-.+.++|-...-+.+.
T Consensus 95 t~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~ 145 (268)
T KOG4175|consen 95 TCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEAR 145 (268)
T ss_pred ccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHH
Confidence 689999874 467889999999999999999888888555444333
No 136
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=86.99 E-value=13 Score=29.07 Aligned_cols=67 Identities=10% Similarity=0.266 Sum_probs=47.1
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.|++++-.......|..+++.+.. .+|+|..... ...+.+..|..+++.+|.+.+++.+++..++..
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a~-----G~Pvi~~~~~----~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALAA-----GVPVIASDIG----GMAELVRDGVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHHC-----CCCEEECCCC----CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhC
Confidence 457776544345567777777764 6788753322 244556667789999999999999999998874
No 137
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.89 E-value=8.5 Score=34.05 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=54.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
.+.+.++|.|+...+.+++ .|+.+.. -.+..+.++.. .-...+++++-.+-+.. -..++...|
T Consensus 423 g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~a-----------gi~~A~~vvv~~~d~~~-n~~i~~~ar 486 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESA-----------GAAKAEVLINAIDDPQT-SLQLVELVK 486 (621)
T ss_pred CCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhc-----------CCCcCCEEEEEeCCHHH-HHHHHHHHH
Confidence 3456666666655443332 3554443 23333444444 22345688877754433 356777888
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
+.+| +.++++-+. +........+.||+..
T Consensus 487 ~~~p--~~~iiaRa~--d~~~~~~L~~~Gad~v 515 (621)
T PRK03562 487 EHFP--HLQIIARAR--DVDHYIRLRQAGVEKP 515 (621)
T ss_pred HhCC--CCeEEEEEC--CHHHHHHHHHCCCCEE
Confidence 8877 888776554 5677778888999855
No 138
>PRK12704 phosphodiesterase; Provisional
Probab=86.87 E-value=1.4 Score=38.06 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=37.5
Q ss_pred CcEEEEeCCCChh--HHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 94 IPVVIMSSENIPS--RINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 94 ~~iI~ls~~~~~~--~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+.+|++|+.++.. ....+++.++.|+..||+..+++...++.-+.
T Consensus 250 p~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 250 PEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 3578888877666 88999999999999999999999877766553
No 139
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=86.73 E-value=13 Score=28.97 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=69.1
Q ss_pred HHHHHHhCCceEEEe-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC--H---HHHHHHHHhhcCCCCCcEE
Q 046192 24 IERLLKTSSYQVTAV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT--G---YDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 24 l~~~l~~~~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~--g---~~~~~~l~~~~~~~~~~iI 97 (187)
-.+.|-+.||.|..+ ++..-..+.+...-. ..++-+-.|=.+ | ...++.|++.. ++|||
T Consensus 129 Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc------------~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~---~vpVi 193 (267)
T CHL00162 129 AAEFLVKKGFTVLPYINADPMLAKHLEDIGC------------ATVMPLGSPIGSGQGLQNLLNLQIIIENA---KIPVI 193 (267)
T ss_pred HHHHHHHCCCEEeecCCCCHHHHHHHHHcCC------------eEEeeccCcccCCCCCCCHHHHHHHHHcC---CCcEE
Confidence 345556789999873 443444445433222 445555445333 2 35677787753 79999
Q ss_pred EEeCCCChhHHHHHHHhCCCcee-----eCCCChHHHHHHHHHHhhhh
Q 046192 98 IMSSENIPSRINRCLEEGAEEFF-----LKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 98 ~ls~~~~~~~~~~a~~~ga~~yl-----~kP~~~~~l~~~i~~~~~~~ 140 (187)
+=+.-...+.+..+++.|+++.+ .|--++.++..+++......
T Consensus 194 vdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AG 241 (267)
T CHL00162 194 IDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAG 241 (267)
T ss_pred EeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHH
Confidence 99988999999999999999875 45567888888887777554
No 140
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=86.66 E-value=3.2 Score=32.41 Aligned_cols=59 Identities=20% Similarity=0.419 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCC------CChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSE------NIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~------~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.+++++.+|+..+ ++|+++++=. ........+.++|+++.+.-...+++.......+.+
T Consensus 76 ~~~~~~~~r~~~~--~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 76 VFELVREIREKDP--TIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred HHHHHHHHHhcCC--CCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4667777775544 7898887733 445678899999999999987777777666655543
No 141
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=86.43 E-value=3.9 Score=31.89 Aligned_cols=60 Identities=20% Similarity=0.447 Sum_probs=42.2
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeCCCC------hhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 77 TGYDLLRKIKESASLKDIPVVIMSSENI------PSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~ls~~~~------~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+.+++++.+|+..+ ++|++.++-... ......+.++|+++.+.-....++....+..+.+
T Consensus 73 ~~~~~v~~ir~~~~--~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~ 138 (256)
T TIGR00262 73 KCFELLKKVRQKHP--NIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKK 138 (256)
T ss_pred HHHHHHHHHHhcCC--CCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHH
Confidence 34566777776533 778776665544 6778889999999999887777776666555543
No 142
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=86.09 E-value=6.4 Score=29.49 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=57.2
Q ss_pred HHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-----CCHHHHHHHHHhhcCCCCCc
Q 046192 23 LIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-----MTGYDLLRKIKESASLKDIP 95 (187)
Q Consensus 23 ~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-----~~g~~~~~~l~~~~~~~~~~ 95 (187)
..-..|+..|+.+.. +..+...+..+... +||.|-+|..+.. .....+++.+.......+++
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l-----------~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 205 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRL-----------PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ 205 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhC-----------CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe
Confidence 344556678887775 56666667777433 4669999975432 12334555554443212444
Q ss_pred EEEEeCCCChhHHHHHHHhCCC---c-eeeCCCCh
Q 046192 96 VVIMSSENIPSRINRCLEEGAE---E-FFLKPVQL 126 (187)
Q Consensus 96 iI~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~ 126 (187)
+ +...-.+.+....+.+.|++ + |+.||...
T Consensus 206 v-ia~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 206 V-VAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred E-EEecCCCHHHHHHHHHcCCCEEeeceeccCCCC
Confidence 4 46666788888899999986 3 46788654
No 143
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=85.94 E-value=15 Score=29.40 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=57.5
Q ss_pred HHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-----CCHHHHHHHHHhhcCCCCCcEE
Q 046192 24 IERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-----MTGYDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 24 l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-----~~g~~~~~~l~~~~~~~~~~iI 97 (187)
+...++..|..+.. +.+.+++..... ..+|.|++.-.-.+ ..-+.+++.+++.. ++|||
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~------------~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~---~iPvi 165 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK------------AGADAVIAEGMESGGHIGELTTMALVPQVVDAV---SIPVI 165 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH------------cCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh---CCCEE
Confidence 55556666765554 677776655442 23678887543222 23578888888754 68999
Q ss_pred EEeCCCChhHHHHHHHhCCCceee
Q 046192 98 IMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 98 ~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.-..-.+...+..++..||++...
T Consensus 166 aaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 166 AAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred EECCCCCHHHHHHHHHcCCCEeec
Confidence 988888999999999999998543
No 144
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=85.88 E-value=14 Score=28.49 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=67.7
Q ss_pred HHHHHHHhCCceE--EEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEe
Q 046192 23 LIERLLKTSSYQV--TAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMS 100 (187)
Q Consensus 23 ~l~~~l~~~~~~v--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls 100 (187)
.+++.|......+ +..-...-..+.+ ...-||-+++|..-...+.-.++..|+...+-...|||-..
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~-----------A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p 75 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEIL-----------ATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPP 75 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHH-----------HhcCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCC
Confidence 4566665433333 3333333455555 45569999999999999999999999887765577887766
Q ss_pred CCCChhHHHHHHHhCCCceeeCCCChHH
Q 046192 101 SENIPSRINRCLEEGAEEFFLKPVQLAD 128 (187)
Q Consensus 101 ~~~~~~~~~~a~~~ga~~yl~kP~~~~~ 128 (187)
. .+...+.++++.||...|..=++..+
T Consensus 76 ~-g~~~~Ikq~LD~GAqtlliPmV~s~e 102 (255)
T COG3836 76 V-GDPVMIKQLLDIGAQTLLIPMVDTAE 102 (255)
T ss_pred C-CCHHHHHHHHccccceeeeeccCCHH
Confidence 5 46889999999999999987666544
No 145
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=85.83 E-value=19 Score=29.88 Aligned_cols=108 Identities=10% Similarity=0.129 Sum_probs=69.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCC-----CCCH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-----GMTG 78 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-----~~~g 78 (187)
..+..|+++.+. +..+.+..++.|. .|.. .-+.++..+.+. ..|++++-.... ..-+
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~-------------~aDv~v~pS~~~~~g~~Eg~p 318 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLD-------------DADVFLLPSVTGADGDMEGIP 318 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHH-------------hCCEEEECCccCCCCCccCcc
Confidence 467778887664 4567777766553 2333 234456656653 245777644321 2234
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
..+++.+.. .+|||..... -..+.+..|.++++..|-+.+++.+++..++.
T Consensus 319 ~~llEAma~-----G~PVI~t~~~----g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 319 VALMEAMAV-----GIPVVSTLHS----GIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred HHHHHHHhC-----CCCEEEeCCC----CchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 556777654 7789754332 24456677889999999999999999999886
No 146
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=85.76 E-value=4.8 Score=31.02 Aligned_cols=59 Identities=15% Similarity=0.336 Sum_probs=41.3
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeCCCC------hhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 77 TGYDLLRKIKESASLKDIPVVIMSSENI------PSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~ls~~~~------~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.++++++.+|+.. ++|+++++-... ...+..+.++|+++.+.-....+++...++.+.+
T Consensus 63 ~~~~~~~~vr~~~---~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~ 127 (242)
T cd04724 63 DVLELVKEIRKKN---TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKE 127 (242)
T ss_pred HHHHHHHHHhhcC---CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 3566777777653 678877766443 6678888999999999866666666666555554
No 147
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=85.52 E-value=5.8 Score=29.74 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=57.1
Q ss_pred HHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-----CCHHHHHHHHHhhcCCCCCcE
Q 046192 24 IERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-----MTGYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 24 l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-----~~g~~~~~~l~~~~~~~~~~i 96 (187)
.-..++..|+.+.. +..+...++.+.... ||.|-+|..... .....+++.+.......++++
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~-----------~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v 205 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRLP-----------VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKV 205 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC-----------CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeE
Confidence 44445667988876 566777777775444 559999975432 123445555544332124444
Q ss_pred EEEeCCCChhHHHHHHHhCCC---c-eeeCCCCh
Q 046192 97 VIMSSENIPSRINRCLEEGAE---E-FFLKPVQL 126 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~ 126 (187)
| .+.-.+......+.+.|++ + |+.+|.+.
T Consensus 206 i-a~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 206 V-AEGVETEEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred E-EEecCCHHHHHHHHHcCCCeeeeceeccCCCC
Confidence 4 6666788889999999985 3 46677654
No 148
>PRK14098 glycogen synthase; Provisional
Probab=85.51 E-value=17 Score=31.06 Aligned_cols=112 Identities=8% Similarity=0.014 Sum_probs=63.7
Q ss_pred ceEEEEEeCCH-HHHHHHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 8 QFHVLAVDDSI-IDRKLIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 8 ~~~ilivd~~~-~~~~~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
..+++|+++-+ .....++++.++.+-.|.. .-+..++...+. ..|++++-. ....-|+..++.
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a-------------~aDi~l~PS-~~E~~Gl~~lEA 401 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA-------------GLDMLLMPG-KIESCGMLQMFA 401 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH-------------hCCEEEeCC-CCCCchHHHHHH
Confidence 45667777543 3455666666554422322 233344444442 256777543 234567767777
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
++. .+|+|+.......+.+......+.++|+..|.+.+.|..++.+++.
T Consensus 402 ma~-----G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 402 MSY-----GTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred HhC-----CCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 664 5556654433333333222223678999999999999999887653
No 149
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=84.72 E-value=14 Score=33.15 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=67.6
Q ss_pred HHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-----CCHHHHHHHHHhhcCCCCCcE
Q 046192 24 IERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-----MTGYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 24 l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-----~~g~~~~~~l~~~~~~~~~~i 96 (187)
.-..|+..|+.+.. +.++...+..+... +||.|=+|-..-. .....+++.+.......++.+
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l-----------~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 751 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRLVSL-----------PVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHhhC-----------CCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeE
Confidence 34456778988876 67888888888444 4669998875421 223445666544332124444
Q ss_pred EEEeCCCChhHHHHHHHhCCC---c-eeeCCCChHHHHHHHHHH
Q 046192 97 VIMSSENIPSRINRCLEEGAE---E-FFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~~~l~~~i~~~ 136 (187)
| ...-.+.+....+.+.|++ + |+.||...++|...++..
T Consensus 752 i-a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 752 V-AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred E-EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 4 5566788888888999987 3 588999999988866543
No 150
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=84.65 E-value=14 Score=27.19 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=55.2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
-++.|+.+++..++.++++++.+| |.|....+.+++++..+. ....+.++..+....+ ....||
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~---------~G~vvhLtmyga~~~~-----~~~~ir 97 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKD---------GGIVVHLTMYGENIQD-----VEPEIR 97 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHh---------CCcEEEEEEecCCccc-----hHHHHH
Confidence 367899999999999999999886 788889999999998851 2245667777777755 344554
Q ss_pred hhcCCCCCcEEEEeC
Q 046192 87 ESASLKDIPVVIMSS 101 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~ 101 (187)
+.... .-|++++-.
T Consensus 98 ~~~~~-~~p~LIvvG 111 (176)
T PRK03958 98 EAHRK-GEPLLIVVG 111 (176)
T ss_pred Hhhcc-CCcEEEEEc
Confidence 42211 335555544
No 151
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=84.49 E-value=15 Score=29.29 Aligned_cols=107 Identities=19% Similarity=0.253 Sum_probs=64.2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
.+++++++.+. ...+.+.....+. .+......++..+.+. ..|++++-.. .+.-|..+++.+.
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-------------~~d~~v~ps~-~E~~~~~~~EAma 292 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLS-------------IADLFLLPSE-KESFGLAALEAMA 292 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHH-------------hcCEEEeCCC-cCCCccHHHHHHH
Confidence 55666665543 2345555544432 2433333333333331 2457666543 3455677777776
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
. .+|+|..... ...+.+..|..+|+.+|-+.+++...+..++..
T Consensus 293 ~-----g~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~ 336 (371)
T cd04962 293 C-----GVPVVASNAG----GIPEVVKHGETGFLVDVGDVEAMAEYALSLLED 336 (371)
T ss_pred c-----CCCEEEeCCC----CchhhhcCCCceEEcCCCCHHHHHHHHHHHHhC
Confidence 4 7788864332 245566778889999999999999988887753
No 152
>PRK10060 RNase II stability modulator; Provisional
Probab=84.25 E-value=16 Score=32.48 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=67.2
Q ss_pred HHHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCC-----CCCHHHHHHHHHhhcCCCCC
Q 046192 22 KLIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-----GMTGYDLLRKIKESASLKDI 94 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-----~~~g~~~~~~l~~~~~~~~~ 94 (187)
...-..|++.|+.+.. +.++...+..+.. -++|.|=+|-..- +.....+++.+-.....-++
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~-----------l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~ 612 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLAR-----------FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNL 612 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHHh-----------CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCC
Confidence 3445666778988876 7888888898844 4566888886332 23344566655443321245
Q ss_pred cEEEEeCCCChhHHHHHHHhCCC---c-eeeCCCChHHHHHHHHH
Q 046192 95 PVVIMSSENIPSRINRCLEEGAE---E-FFLKPVQLADVNKLKPH 135 (187)
Q Consensus 95 ~iI~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~~~l~~~i~~ 135 (187)
.+| ...-.+.+....+...|++ + |+.||...+++...++.
T Consensus 613 ~vi-AeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 613 QVI-AEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred cEE-EecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 554 4455677778888889986 3 47899999888776543
No 153
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=84.22 E-value=15 Score=27.25 Aligned_cols=56 Identities=25% Similarity=0.427 Sum_probs=42.0
Q ss_pred cccEEEEeccCCCC--------CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGM--------TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~--------~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|.|.+..-.|.. .|++.++.+++..+ .+||++...- +.+.+..++..|++++..
T Consensus 124 gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 124 GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG--DIPIVAIGGI-TPENAPEVLEAGADGVAV 187 (212)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 46788876544432 35888999988653 5899877766 678899999999998864
No 154
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=84.11 E-value=5.1 Score=29.52 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=45.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEe-cc-CCCCCHHHHHHHHHhh
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD-YC-MPGMTGYDLLRKIKES 88 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d-~~-~~~~~g~~~~~~l~~~ 88 (187)
||+||..-.+-..+.+.|...|+.+....+....++.+.... ||.||+- -. .|..++.+ ...++..
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~-----------~d~iilsgGpg~p~~~~~~-~~~i~~~ 69 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALL-----------PLLIVISPGPCTPNEAGIS-LEAIRHF 69 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcC-----------CCEEEEcCCCCChhhcchh-HHHHHHh
Confidence 799999999999999999988988877553322233332223 4555552 11 11112221 3444443
Q ss_pred cCCCCCcEEEEeC
Q 046192 89 ASLKDIPVVIMSS 101 (187)
Q Consensus 89 ~~~~~~~iI~ls~ 101 (187)
. .+.||+-+.-
T Consensus 70 ~--~~~PvLGIC~ 80 (188)
T TIGR00566 70 A--GKLPILGVCL 80 (188)
T ss_pred c--cCCCEEEECH
Confidence 2 2789988775
No 155
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=83.93 E-value=4.4 Score=32.81 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=41.9
Q ss_pred ccEEEEeccCCCCC-HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 64 VNLIITDYCMPGMT-GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 64 ~dlvi~d~~~~~~~-g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
+|++.+|...++.+ ..+++++|++..| ++|||. .+-.+.+.+..+.++|++...
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p--~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLP--ETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCC--CCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 48999999997654 5568999998765 677665 233478899999999999854
No 156
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=83.53 E-value=14 Score=31.49 Aligned_cols=98 Identities=16% Similarity=0.303 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC----HHHHH---HHHHhhc
Q 046192 17 SIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT----GYDLL---RKIKESA 89 (187)
Q Consensus 17 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~----g~~~~---~~l~~~~ 89 (187)
+....+.+...|.+.||.+.. .....|+|+++....-.+ ....+ +.+++.+
T Consensus 36 N~~dse~~~~~l~~~G~~~~~----------------------~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~ 93 (467)
T PRK14329 36 NFADSEIVASILQMAGYNTTE----------------------NLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKN 93 (467)
T ss_pred cHHHHHHHHHHHHHCcCEECC----------------------CcccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhC
Confidence 444556667777667765532 112367999999776533 22233 4445555
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHh-CCCceeeCCCChHHHHHHHHHHhhh
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEE-GAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~-ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
| +.+|++........ -.+.++. +.-|++..+-....+.+.+..+..+
T Consensus 94 p--~~~ivvgGc~a~~~-~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~~ 141 (467)
T PRK14329 94 P--KLIVGVLGCMAERL-KDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEEG 141 (467)
T ss_pred C--CcEEEEECChhcCc-HHHHHhcCCCceEEECCCCHHHHHHHHHHHhcC
Confidence 4 66666554443322 2233343 4368888888888888887776543
No 157
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=82.82 E-value=20 Score=29.16 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=43.5
Q ss_pred cccEEEEeccCCCC-CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGM-TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|+|++|..-... .-++.+++||+..| + +.|+-..-.+.+.+..++.+|||....
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p--~-~~viaGNV~T~e~a~~Li~aGAD~ikV 177 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFP--E-HTIMAGNVVTGEMVEELILSGADIVKV 177 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCC--C-CeEEEecccCHHHHHHHHHcCCCEEEE
Confidence 48899999977654 35678999998764 4 455566677899999999999998753
No 158
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=82.48 E-value=3.7 Score=30.30 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=49.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEecc-C-CCCCHHHHHHHHHhh
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC-M-PGMTGYDLLRKIKES 88 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~-~-~~~~g~~~~~~l~~~ 88 (187)
||+||..-.+-..|.++|...|+.+..+.+..-.++.+.... ||.||+.-- + |..++. ....++..
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~-----------~~~iilsgGP~~~~~~~~-~~~~i~~~ 69 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLA-----------PSHLVISPGPCTPNEAGI-SLAVIRHF 69 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcC-----------CCeEEEcCCCCChHhCCC-chHHHHHh
Confidence 799999999999999999998988877654322223333233 445555432 1 112222 22233322
Q ss_pred cCCCCCcEEEEeCCCChhHHHHH
Q 046192 89 ASLKDIPVVIMSSENIPSRINRC 111 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a 111 (187)
. ...||+-+.-. ...+..+
T Consensus 70 ~--~~~PiLGIC~G--~Qlla~~ 88 (191)
T PRK06774 70 A--DKLPILGVCLG--HQALGQA 88 (191)
T ss_pred c--CCCCEEEECHH--HHHHHHH
Confidence 2 27899888753 3444444
No 159
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=82.39 E-value=13 Score=27.00 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=60.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--ceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 10 HVLAVDDSIIDRKLIERLLKT----SS--YQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~----~~--~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
.++|-|+|-.....+...+++ .+ ..+. .+.+.+++.+.+. ..+|+|.+|-..| .+--+++
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~------------~g~d~I~lD~~~~-~~~~~~v 118 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALE------------AGADIIMLDNMSP-EDLKEAV 118 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH------------TT-SEEEEES-CH-HHHHHHH
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH------------hCCCEEEecCcCH-HHHHHHH
Confidence 467777776665555555532 23 2243 4788889888874 2377999997655 2333455
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
+.++...+ . ..|.++..-+.+.+.+....|+|.+-
T Consensus 119 ~~l~~~~~--~-v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 119 EELRELNP--R-VKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp HHHHHHTT--T-SEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred HHHhhcCC--c-EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 55656654 3 67778888889999999999987653
No 160
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=82.31 E-value=28 Score=29.47 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=65.5
Q ss_pred ceEEEEEeCC---HHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 8 QFHVLAVDDS---IIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 8 ~~~ilivd~~---~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
..+.+|+++. +...+.+.+..++.|. .|.... ..+..+.+. ..|++++-.. ...-|..++
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~-------------~aDv~vlpS~-~Eg~p~~vl 388 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP-------------KLDVLVLTSI-SEGQPLVIL 388 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH-------------hCCEEEeCch-hhcCChHHH
Confidence 4666777643 3445556666665553 233332 333333331 3557776543 345567777
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHh------CCCceeeCCCChHHHHHHHHHHhhh
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEE------GAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~------ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+.+.. .+|+|. |... ...+.... |..+++..|.+.+++.+++..++..
T Consensus 389 EAma~-----G~PVVa-td~g---~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~ 442 (475)
T cd03813 389 EAMAA-----GIPVVA-TDVG---SCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKD 442 (475)
T ss_pred HHHHc-----CCCEEE-CCCC---ChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC
Confidence 77765 778876 3322 23334444 6789999999999999999988764
No 161
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=82.19 E-value=11 Score=30.68 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=42.8
Q ss_pred cccEEEEeccCCCCC-HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 63 QVNLIITDYCMPGMT-GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~-g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
.+|+|++|....... -++.+++||+..| +++ |+..+-.+.+-+...+.+|||..
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~~P--~~~-vIaGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREAWP--DKT-ICAGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHhCC--CCc-EEEecccCHHHHHHHHHcCCCEE
Confidence 588999999776543 5678999999876 666 44677778888999999999964
No 162
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=82.18 E-value=3.9 Score=31.49 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=41.8
Q ss_pred ccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCC
Q 046192 62 IQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125 (187)
Q Consensus 62 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~ 125 (187)
..||++|+=.-.+...|..-.+.+.... +.|.|++++..... ..++++..-.+|++-+.+
T Consensus 58 ~~pdf~I~isPN~~~PGP~~ARE~l~~~---~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 58 WDPDFVIVISPNAAAPGPTKAREMLSAK---GIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp H--SEEEEE-S-TTSHHHHHHHHHHHHS---SS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred hCCCEEEEECCCCCCCCcHHHHHHHHhC---CCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 3466988888778888998888877654 89999999976555 467888888889766554
No 163
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=82.16 E-value=18 Score=34.68 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=67.7
Q ss_pred ceEEEEE----eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C-CH
Q 046192 8 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M-TG 78 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~-~g 78 (187)
..+|++. |-|..=...+.-+|+..||+|+-. -..++.++.+... .+|+|.+..-+.. + .-
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~-----------~~diVgLS~L~t~s~~~m 819 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEE-----------NADIIGLSGLITPSLDEM 819 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh-----------CCCEEEEcCcchhhHHHH
Confidence 4677776 666666677777778889999873 3567777777444 4559999887754 3 34
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhH----HHHHHHhCCCceeeCC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSR----INRCLEEGAEEFFLKP 123 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~----~~~a~~~ga~~yl~kP 123 (187)
.++++.+++.+. ++||++=.+..+... +...+ .|++.|..-.
T Consensus 820 ~~~i~~L~~~g~--~v~v~vGGa~~s~~~ta~~i~~~y-~gad~y~~DA 865 (1229)
T PRK09490 820 VHVAKEMERQGF--TIPLLIGGATTSKAHTAVKIAPNY-SGPVVYVTDA 865 (1229)
T ss_pred HHHHHHHHhcCC--CCeEEEEeeccchhhhhhhhhhcc-cCCcEEecCH
Confidence 568899998865 788887666544333 11112 2777776543
No 164
>PLN02335 anthranilate synthase
Probab=82.09 E-value=5.8 Score=30.15 Aligned_cols=82 Identities=10% Similarity=0.023 Sum_probs=47.6
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEec-cC-CCCCHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY-CM-PGMTGYDLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~-~~-~~~~g~~~~~ 83 (187)
.++.+||+||..--+-..+.+.|++.|+.+..+......++.+... .||.||+-- -+ |...+ ...+
T Consensus 16 ~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~-----------~~d~iVisgGPg~p~d~~-~~~~ 83 (222)
T PLN02335 16 KQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRK-----------NPRGVLISPGPGTPQDSG-ISLQ 83 (222)
T ss_pred CccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhc-----------CCCEEEEcCCCCChhhcc-chHH
Confidence 4467899999877778889999999998777754321112222222 244555543 22 21122 2344
Q ss_pred HHHhhcCCCCCcEEEEeC
Q 046192 84 KIKESASLKDIPVVIMSS 101 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~ 101 (187)
.+++... ..|++-+.-
T Consensus 84 ~~~~~~~--~~PiLGICl 99 (222)
T PLN02335 84 TVLELGP--LVPLFGVCM 99 (222)
T ss_pred HHHHhCC--CCCEEEecH
Confidence 4554433 789987764
No 165
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=81.79 E-value=15 Score=28.14 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=42.8
Q ss_pred EEEEeccCCCC---CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 66 LIITDYCMPGM---TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 66 lvi~d~~~~~~---~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
++++|+...+. .-.++++.+.+.. .+|+++-..-.+.+.+.+++..|++..+.
T Consensus 162 li~~di~~~G~~~g~~~~~~~~i~~~~---~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 162 LIVLDIDRVGSGQGPDLELLERLAARA---DIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred EEEEEcCccccCCCcCHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 99999976552 2356778887753 78999999899999999999999998765
No 166
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=81.72 E-value=6.4 Score=32.86 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=43.0
Q ss_pred cccEEEEeccCCC-CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 63 QVNLIITDYCMPG-MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 63 ~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
.+|+|++|...+. ..-.++++++++..| ++++| +..-.+.+....+.++||+...
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p--~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYP--NLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCC--CCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 4779999998875 456688999998776 66644 5555678899999999998754
No 167
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=81.51 E-value=23 Score=27.45 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=45.0
Q ss_pred ccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCC
Q 046192 62 IQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125 (187)
Q Consensus 62 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~ 125 (187)
..||++|+=.-.|...|..-.+.+.+.. ++|.|++++....... ++++..-.+|++-+.+
T Consensus 59 ~~pDf~i~isPN~a~PGP~~ARE~l~~~---~iP~IvI~D~p~~K~~-d~l~~~g~GYIivk~D 118 (277)
T PRK00994 59 WKPDFVIVISPNPAAPGPKKAREILKAA---GIPCIVIGDAPGKKVK-DAMEEQGLGYIIVKAD 118 (277)
T ss_pred hCCCEEEEECCCCCCCCchHHHHHHHhc---CCCEEEEcCCCccchH-HHHHhcCCcEEEEecC
Confidence 4567888877777788888778777654 7899999998766644 7888877888765543
No 168
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=81.48 E-value=19 Score=26.52 Aligned_cols=79 Identities=8% Similarity=0.074 Sum_probs=54.5
Q ss_pred HHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 046192 26 RLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENI 104 (187)
Q Consensus 26 ~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~ 104 (187)
+..+..+..+. .+.+.+++.+.+. ..+|.+-++- .+. .|.++++.++...+ ++|++.+..- +
T Consensus 91 ~~~~~~~~~~i~gv~t~~e~~~A~~------------~Gad~i~~~p-~~~-~g~~~~~~l~~~~~--~~p~~a~GGI-~ 153 (190)
T cd00452 91 KAANRAGIPLLPGVATPTEIMQALE------------LGADIVKLFP-AEA-VGPAYIKALKGPFP--QVRFMPTGGV-S 153 (190)
T ss_pred HHHHHcCCcEECCcCCHHHHHHHHH------------CCCCEEEEcC-Ccc-cCHHHHHHHHhhCC--CCeEEEeCCC-C
Confidence 33333454333 4778888877763 2366887743 233 38999999987655 6888877776 7
Q ss_pred hhHHHHHHHhCCCceee
Q 046192 105 PSRINRCLEEGAEEFFL 121 (187)
Q Consensus 105 ~~~~~~a~~~ga~~yl~ 121 (187)
.+.+.+.+..|++....
T Consensus 154 ~~n~~~~~~~G~~~v~v 170 (190)
T cd00452 154 LDNAAEWLAAGVVAVGG 170 (190)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 89999999999887644
No 169
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=81.47 E-value=25 Score=33.75 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=69.7
Q ss_pred ceEEEEE----eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C-CH
Q 046192 8 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M-TG 78 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~-~g 78 (187)
..+|++. |-|..=...+.-+|+..||+|+-. -..++.++.+... .+|+|-+..-+.. + .-
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~-----------~~diVgLS~Lmt~t~~~m 800 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDH-----------NADVIGLSGLITPSLDEM 800 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh-----------CCCEEEEcCcccccHHHH
Confidence 4577766 556666666777778889999873 3567777887544 4559999887754 3 34
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHH---HHhCCCceeeCCC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRC---LEEGAEEFFLKPV 124 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a---~~~ga~~yl~kP~ 124 (187)
.++++.+++.+. .+||++=.+..+..+...- .-.|++.|..-.+
T Consensus 801 ~~vi~~L~~~g~--~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~ 847 (1178)
T TIGR02082 801 KEVAEEMNRRGI--TIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDAS 847 (1178)
T ss_pred HHHHHHHHhcCC--CceEEEeccccchhHHHhhhhhhccCCeEEecCHH
Confidence 568899998865 7888877666555555331 2338877765433
No 170
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=81.08 E-value=26 Score=29.16 Aligned_cols=95 Identities=12% Similarity=0.165 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC----CHHHHHHHHHhhcCCCC
Q 046192 18 IIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM----TGYDLLRKIKESASLKD 93 (187)
Q Consensus 18 ~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~----~g~~~~~~l~~~~~~~~ 93 (187)
....+.+...|...||..+.. ...+|+|+++....-. ...+.++.+++.+| +
T Consensus 10 ~~ds~~~~~~l~~~g~~~~~~----------------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p--~ 65 (414)
T TIGR01579 10 QYESESLKNQLIQKGYEVVPD----------------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNP--T 65 (414)
T ss_pred HHHHHHHHHHHHHCcCEECCC----------------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCC--C
Confidence 344566777777778765321 1236799999876553 36788888888765 6
Q ss_pred CcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 94 IPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 94 ~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.+||+-..... ..-.++......|++..+-....+.+.+....
T Consensus 66 ~~vvvgGc~a~-~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~~ 108 (414)
T TIGR01579 66 AKIIVTGCYAQ-SNPKELADLKDVDLVLGNKEKDKINKLLSLGL 108 (414)
T ss_pred cEEEEECCccc-cCHHHHhcCCCCcEEECCCCHHHHHHHHHHHh
Confidence 66665444332 22223344555678888877777777766543
No 171
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=80.70 E-value=24 Score=27.32 Aligned_cols=114 Identities=16% Similarity=0.264 Sum_probs=70.8
Q ss_pred ceEEEEEeCCHH----HHHHHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-----C
Q 046192 8 QFHVLAVDDSII----DRKLIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-----M 76 (187)
Q Consensus 8 ~~~ilivd~~~~----~~~~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-----~ 76 (187)
++.+-|-+.... ....+-+.|++.|+.+.. +.+|-..+..+... +||.|=+|-..-. .
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l-----------~~d~iKID~~fi~~i~~~~ 189 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRL-----------PPDILKIDRSFVRDLETDA 189 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhC-----------CCCeEEECHHHHhhcccCc
Confidence 344445554431 233345555678887776 89999999999544 5568888875432 2
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCC---c-eeeCCCChHHHHHHH
Q 046192 77 TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAE---E-FFLKPVQLADVNKLK 133 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~~~l~~~i 133 (187)
....+++.|-.....-++.+|+ -.-.+.+......+.|++ + |+.||...+++...+
T Consensus 190 ~~~~iv~~iv~la~~l~~~vva-EGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~ 249 (256)
T COG2200 190 RDQAIVRAIVALAHKLGLTVVA-EGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALL 249 (256)
T ss_pred chHHHHHHHHHHHHHCCCEEEE-eecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHH
Confidence 3335666665544322444443 334567778888889987 3 578899887765554
No 172
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=80.65 E-value=14 Score=24.63 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=50.4
Q ss_pred eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCCC-CHHHHHHHHHhhcC
Q 046192 15 DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM-TGYDLLRKIKESAS 90 (187)
Q Consensus 15 d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~-~g~~~~~~l~~~~~ 90 (187)
+.++.-...+...++..|+++... ...++..+.+.. ..||+|.+....... .....+..+++..+
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~-----------~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p 78 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE-----------EDADVVGLSALSTTHMEAMKLVIEALKELG 78 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH-----------cCCCEEEEecchHhHHHHHHHHHHHHHhcC
Confidence 667777788889999999988864 355666666643 356699999877653 45666777777654
Q ss_pred CCCCcEEEEe
Q 046192 91 LKDIPVVIMS 100 (187)
Q Consensus 91 ~~~~~iI~ls 100 (187)
. ++++++=.
T Consensus 79 ~-~~~ivvGG 87 (125)
T cd02065 79 I-DIPVVVGG 87 (125)
T ss_pred C-CCeEEEeC
Confidence 2 55555443
No 173
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=80.62 E-value=28 Score=28.03 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=46.7
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.|++++-.. ...-|..+++.+.. .+|||....... ..+.+..|.++++..|.+.+++.+++..++...
T Consensus 258 ~d~~v~~s~-~Egf~~~~lEAma~-----G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 258 VSALLLTSK-FEGFPMTLLEAMSY-----GIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CcEEEECCc-ccCcChHHHHHHHc-----CCCEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 356665432 23447777777765 788975431222 334566788999999999999999999988664
No 174
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=80.55 E-value=40 Score=29.67 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=64.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
..+.+|+++.+. +..+....+..|. .|......++....+. ..|++++-. ....-|..+++.+
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~La-------------aADVfVlPS-~~EGfp~vlLEAM 493 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQ-------------KMNVFILFS-RYEGLPNVLIEAQ 493 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHH-------------hCCEEEEcc-cccCccHHHHHHH
Confidence 567888887664 4556666666553 3444444344444442 246777643 3455677788877
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHH
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLK 133 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i 133 (187)
.. .+|||....... .+.+..|.++|+..|.+...+.+.+
T Consensus 494 A~-----GlPVVATdvGG~----~EiV~dG~nG~LVp~~D~~aLa~ai 532 (578)
T PRK15490 494 MV-----GVPVISTPAGGS----AECFIEGVSGFILDDAQTVNLDQAC 532 (578)
T ss_pred Hh-----CCCEEEeCCCCc----HHHcccCCcEEEECCCChhhHHHHH
Confidence 65 788985544332 3455689999999998877766554
No 175
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=80.49 E-value=24 Score=27.14 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCCC------CHHHHHHHHHhhcC
Q 046192 20 DRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM------TGYDLLRKIKESAS 90 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~------~g~~~~~~l~~~~~ 90 (187)
....+...+++.|..+..+ .+..+.++.+....+ .++++ ...|+. +..+.++++|+..+
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~-----------~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~ 184 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSP-----------LFIYY-GLRPATGVPLPVSVERNIKRVRNLVG 184 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC-----------CEEEE-EeCCCCCCCchHHHHHHHHHHHHhcC
Confidence 3445666677788766553 233455555533322 36666 444442 22346777777654
Q ss_pred CCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 91 LKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 91 ~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
..|+++=..-.+.+.+..+.+.|||+++.=
T Consensus 185 --~~~i~v~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 185 --NKYLVVGFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred --CCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 466553333347888888899999999875
No 176
>PRK04302 triosephosphate isomerase; Provisional
Probab=80.33 E-value=23 Score=26.80 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
++++.+++... ++||+.=.+-.+.+.+..+...|+++.+.=
T Consensus 162 ~~~~~ir~~~~--~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 162 DAVEAVKKVNP--DVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHHhccC--CCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 45666776433 689998888888999999999999998754
No 177
>PRK05670 anthranilate synthase component II; Provisional
Probab=79.87 E-value=7.4 Score=28.61 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=25.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCC
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDS 40 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~ 40 (187)
|||+|....+-..+.+.|.+.|+.+.....
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~ 31 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRN 31 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEEC
Confidence 799999999999999999999987776543
No 178
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=79.83 E-value=21 Score=26.22 Aligned_cols=71 Identities=18% Similarity=0.111 Sum_probs=45.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCce--EE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH-HHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQ--VT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG-YDLLRK 84 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~--v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g-~~~~~~ 84 (187)
-+|+.||.++.....+++-++..+.. +. ...+...++..... ....+|+|++|---..... .++++.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------~~~~fDiIflDPPY~~~~~~~~~l~~ 136 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------KGEKFDIIFLDPPYAKGLYYEELLEL 136 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH---------CTS-EEEEEE--STTSCHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc---------cCCCceEEEECCCcccchHHHHHHHH
Confidence 47999999999999999999887632 33 35666666655521 2356999999954333443 567777
Q ss_pred HHhh
Q 046192 85 IKES 88 (187)
Q Consensus 85 l~~~ 88 (187)
+.+.
T Consensus 137 l~~~ 140 (183)
T PF03602_consen 137 LAEN 140 (183)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 7653
No 179
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.70 E-value=19 Score=28.66 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--ceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 10 HVLAVDDSIIDRKLIERLLK----TSS--YQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~----~~~--~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
.|||-|+|-.+...+...+. ..+ ..+.. +.+.+|+.+.+. ..+|+|.+|-.-| .+--+.+
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~------------~GaD~I~LDn~~~-e~l~~av 234 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALE------------YGADIIMLDNMPV-DLMQQAV 234 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHH------------cCCCEEEECCCCH-HHHHHHH
Confidence 57777877666544555443 233 33443 789999988873 2367999993322 2222234
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
+.+++..+ ++| +..+..-+.+.+.+....|+|..
T Consensus 235 ~~~~~~~~--~i~-leAsGGIt~~ni~~ya~tGvD~I 268 (288)
T PRK07428 235 QLIRQQNP--RVK-IEASGNITLETIRAVAETGVDYI 268 (288)
T ss_pred HHHHhcCC--CeE-EEEECCCCHHHHHHHHHcCCCEE
Confidence 44444333 555 44555567888888889998865
No 180
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=79.42 E-value=26 Score=27.92 Aligned_cols=105 Identities=7% Similarity=0.057 Sum_probs=64.2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+++|+++.+... .+.+.+ ..+..+...-+.++..+.+. ..|++++-.. ..-|..+++.+..
T Consensus 222 ~~l~ivG~g~~~~-~l~~~~-~~~V~~~g~~~~~~~~~~~~-------------~ad~~v~ps~--e~~g~~~~Eama~- 283 (351)
T cd03804 222 KRLVVIGDGPELD-RLRAKA-GPNVTFLGRVSDEELRDLYA-------------RARAFLFPAE--EDFGIVPVEAMAS- 283 (351)
T ss_pred CcEEEEECChhHH-HHHhhc-CCCEEEecCCCHHHHHHHHH-------------hCCEEEECCc--CCCCchHHHHHHc-
Confidence 5677888776532 333311 12233333445666666663 2457665544 4445666666654
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+|||........ +.+..|..+++..|-+.+++.+.+..+...
T Consensus 284 ----G~Pvi~~~~~~~~----e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 284 ----GTPVIAYGKGGAL----ETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred ----CCCEEEeCCCCCc----ceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 7889876543322 334556778999999999999999888764
No 181
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=79.36 E-value=32 Score=27.87 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=43.1
Q ss_pred ccEEEEeccCCCC-CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 64 VNLIITDYCMPGM-TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 64 ~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.|+|++|..-... ..++.++++++.. ..|.|+...-.+.+.+..++++||+....
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~---p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHL---PDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhC---CCCEEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 6899999966553 4567888998865 34667677677899999999999998753
No 182
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=79.27 E-value=29 Score=27.35 Aligned_cols=109 Identities=14% Similarity=0.189 Sum_probs=64.1
Q ss_pred ceEEEEEeCCHH---HHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 8 QFHVLAVDDSII---DRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 8 ~~~ilivd~~~~---~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
..++.++++.+. ..+.+.+.+...+. .|......++..+.+. ..|++++-...+...|..++
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~-------------~ad~~i~ps~~~e~~~~~l~ 282 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA-------------LADIVVSASTEPEAFGRTAV 282 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH-------------hCCEEEecCCCCCCCchHHH
Confidence 456677765543 23333444444332 2444433444444442 24577665434556677777
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+.+.. .+|+|+..... ..+.+..|..+++..|.+.+++..++..+..
T Consensus 283 EA~a~-----G~PvI~~~~~~----~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 283 EAQAM-----GRPVIASDHGG----ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred HHHhc-----CCCEEEcCCCC----cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 77764 77887543322 3445566778999999999999999865553
No 183
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=79.25 E-value=25 Score=26.65 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=42.0
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
.||+|+.=--.|...|..-.+.+.+.. +.|.|++++.. ...+.+.++....+|++-+
T Consensus 60 ~pDfvi~isPNpaaPGP~kARE~l~~s---~~PaiiigDaP-g~~vkdeleeqGlGYIivk 116 (277)
T COG1927 60 NPDFVIYISPNPAAPGPKKAREILSDS---DVPAIIIGDAP-GLKVKDELEEQGLGYIIVK 116 (277)
T ss_pred CCCEEEEeCCCCCCCCchHHHHHHhhc---CCCEEEecCCc-cchhHHHHHhcCCeEEEec
Confidence 455998888888888998888887754 88999999876 4455566666566675443
No 184
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=79.19 E-value=0.13 Score=30.24 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=18.7
Q ss_pred hhhhhhcccccccCCCCCCCccC
Q 046192 164 DRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
..++.+|.+++.++..|.+++||
T Consensus 2 ~~LT~~E~~vl~~l~~G~~~~eI 24 (58)
T PF00196_consen 2 PSLTERELEVLRLLAQGMSNKEI 24 (58)
T ss_dssp GSS-HHHHHHHHHHHTTS-HHHH
T ss_pred CccCHHHHHHHHHHHhcCCcchh
Confidence 45789999999999999999886
No 185
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=78.93 E-value=18 Score=28.64 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=57.9
Q ss_pred EEEEEeCCHHHHH---HHHHHHH----hCC-ceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHH
Q 046192 10 HVLAVDDSIIDRK---LIERLLK----TSS-YQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYD 80 (187)
Q Consensus 10 ~ilivd~~~~~~~---~l~~~l~----~~~-~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~ 80 (187)
.|||-|+|..+.. .+...++ ..+ ..+. .+.+.+++.+.+.. .+|+|++|- ++..+-.+
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~------------GaDiI~lDn-~~~e~l~~ 224 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA------------SPDILQLDK-FTPQQLHH 224 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc------------CcCEEEECC-CCHHHHHH
Confidence 4567777665543 3444443 222 2343 47899999888732 367999993 33333444
Q ss_pred HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 81 LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
.++.++...+ -..+-.+..-+.+.+.+....|+|-+
T Consensus 225 ~v~~l~~~~~---~~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 225 LHERLKFFDH---IPTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred HHHHHhccCC---CEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 5555543332 23566777888888888888998764
No 186
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=78.71 E-value=34 Score=27.77 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=72.0
Q ss_pred eEEEEEeCCHHHHHHHHHHHH------hCCceE-EEeCCHHHHHHHHhccCcccccccccccccEEEEeccCC-----CC
Q 046192 9 FHVLAVDDSIIDRKLIERLLK------TSSYQV-TAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-----GM 76 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~------~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-----~~ 76 (187)
+++=|+.|+......+...++ +.||.+ ..|.+.....+.+....| +.+.-+--| +.
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~------------~avmPl~~pIGsg~gv 235 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGA------------VAVMPLGAPIGSGLGI 235 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCC------------EEEeeccccccCCCCC
Confidence 455566665554443333332 348888 445444444444433332 333332111 12
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee-----CCCChHHHHHHHHHHhhhh
Q 046192 77 TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL-----KPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~-----kP~~~~~l~~~i~~~~~~~ 140 (187)
.-.+.++.+.+. + .+|||+=+.-...+.+..|++.|+++.+. |--++....++++....+.
T Consensus 236 ~~p~~i~~~~e~-~--~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aG 301 (326)
T PRK11840 236 QNPYTIRLIVEG-A--TVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAG 301 (326)
T ss_pred CCHHHHHHHHHc-C--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHH
Confidence 344677777775 2 79999888889999999999999998764 5557777777777766553
No 187
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=78.71 E-value=13 Score=31.86 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=43.1
Q ss_pred ccccEEEEeccCCCC-CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 62 IQVNLIITDYCMPGM-TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 62 ~~~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
...|.|++|...+.. .-.+++++|++..+ ++|||+ ..-.+.+....+.++||+..
T Consensus 236 aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~--~~~vi~-g~~~t~~~~~~l~~~G~d~i 291 (475)
T TIGR01303 236 AGVDVLVIDTAHGHQVKMISAIKAVRALDL--GVPIVA-GNVVSAEGVRDLLEAGANII 291 (475)
T ss_pred hCCCEEEEeCCCCCcHHHHHHHHHHHHHCC--CCeEEE-eccCCHHHHHHHHHhCCCEE
Confidence 347799999988554 34568899998776 788876 55678899999999999864
No 188
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=78.39 E-value=34 Score=27.65 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=53.4
Q ss_pred HHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCC-CC------CHHHHHHHHHhhcCCCCCc
Q 046192 24 IERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GM------TGYDLLRKIKESASLKDIP 95 (187)
Q Consensus 24 l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~------~g~~~~~~l~~~~~~~~~~ 95 (187)
+.+.++..|..+.. +.+..++...... -+|.|++--.-. +. +-+.++..+++.. ++|
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~------------G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~---~iP 192 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA------------GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV---DIP 192 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT------------T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc------------CCCEEEEeccccCCCCCccccceeeHHHHHhhhc---CCc
Confidence 44567777866654 8999998776632 366777764322 21 2466778888765 689
Q ss_pred EEEEeCCCChhHHHHHHHhCCCcee
Q 046192 96 VVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 96 iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
||.-..-.+...+..++..||++..
T Consensus 193 ViaAGGI~dg~~iaaal~lGA~gV~ 217 (330)
T PF03060_consen 193 VIAAGGIADGRGIAAALALGADGVQ 217 (330)
T ss_dssp EEEESS--SHHHHHHHHHCT-SEEE
T ss_pred EEEecCcCCHHHHHHHHHcCCCEee
Confidence 9998888899999999999999865
No 189
>PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional
Probab=78.04 E-value=0.27 Score=37.19 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=21.4
Q ss_pred hhhhhhcccccccCCCCCCCccC
Q 046192 164 DRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
..+++||.+|+.++++|+|++||
T Consensus 142 ~~LS~RE~eVL~Lia~G~SnkEI 164 (217)
T PRK13719 142 NKVTKYQNDVFILYSFGFSHEYI 164 (217)
T ss_pred CCCCHHHHHHHHHHHCCCCHHHH
Confidence 46899999999999999999987
No 190
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=77.82 E-value=13 Score=27.31 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=26.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
+||||||....+-..+.+.|++.|+.+..+.
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 4899999999999999999999997776654
No 191
>PLN02591 tryptophan synthase
Probab=77.80 E-value=11 Score=29.34 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=43.1
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeCC------CChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 77 TGYDLLRKIKESASLKDIPVVIMSSE------NIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~ls~~------~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+.+++++.+|+. . ++|+++++=. .-.....++.++|+++.|.-....++.......+.+
T Consensus 65 ~~~~~~~~~r~~-~--~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 65 SVISMLKEVAPQ-L--SCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHhcC-C--CCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 456777777753 3 7898877643 335567888999999999998888887766666544
No 192
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=77.70 E-value=28 Score=26.23 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=51.1
Q ss_pred eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC---------CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHH
Q 046192 38 VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG---------MTGYDLLRKIKESASLKDIPVVIMSSENIPSRI 108 (187)
Q Consensus 38 ~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~---------~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~ 108 (187)
-.+....++.+ ....+|.|++|+.-.. .+-.+++..++..... ...+++=....+....
T Consensus 7 p~~~~~~~~~a-----------~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~-~~~~~VRvn~~~~~~~ 74 (221)
T PF03328_consen 7 PANSPKMLEKA-----------AASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAA-GSEIIVRVNSLDSPHI 74 (221)
T ss_dssp ESTSHHHHHHH-----------HTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTS-SSEEEEE-SSTTCHHH
T ss_pred eCCCHHHHHHH-----------HhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccc-cccceecCCCCCcchh
Confidence 34555666666 3445779999998765 4445666666653321 2334433333455566
Q ss_pred HH---HHHhCCCceeeCCC-ChHHHHHHHHHH
Q 046192 109 NR---CLEEGAEEFFLKPV-QLADVNKLKPHL 136 (187)
Q Consensus 109 ~~---a~~~ga~~yl~kP~-~~~~l~~~i~~~ 136 (187)
.+ ++..|+++.+..=+ +.+++..+.+.+
T Consensus 75 ~~Dl~~l~~g~~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 75 ERDLEALDAGADGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp HHHHHHHHTTSSEEEETT--SHHHHHHHHHHH
T ss_pred hhhhhhcccCCCeeeccccCcHHHHHHHHHHH
Confidence 66 99999999876544 455555554443
No 193
>PRK05637 anthranilate synthase component II; Provisional
Probab=77.70 E-value=16 Score=27.48 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=27.3
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCC
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDS 40 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~ 40 (187)
-+|++||...-+-..+.+.|+..|+.+..+..
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~ 33 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRN 33 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeC
Confidence 47999999999999999999999987777654
No 194
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=77.44 E-value=16 Score=26.62 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhhcCCCCCc-EEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 77 TGYDLLRKIKESASLKDIP-VVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~-iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+-.+.++.+++..| ..+ |.+ ...+.+...+|++.|++...+..++++++.++++.+..
T Consensus 65 ~i~~av~~~~~~~~--~~~~I~V--Ev~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~ 123 (169)
T PF01729_consen 65 GIEEAVKAARQAAP--EKKKIEV--EVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRE 123 (169)
T ss_dssp SHHHHHHHHHHHST--TTSEEEE--EESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC--CCceEEE--EcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhh
Confidence 34678889999876 444 443 33458889999999999999999999999999887643
No 195
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=77.43 E-value=9.5 Score=32.31 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=42.9
Q ss_pred cccEEEEeccCCC-CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 63 QVNLIITDYCMPG-MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 63 ~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
.+|++.+|....+ ....+.++++++..| ++||++ ..-.+.+.+..+.++||+..
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~--~~~vi~-G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYP--DLDIIA-GNVATAEQAKALIDAGADGL 290 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCC--CCCEEE-EeCCCHHHHHHHHHhCCCEE
Confidence 4789999996654 456778999998765 788876 55667899999999999876
No 196
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=76.98 E-value=37 Score=27.26 Aligned_cols=67 Identities=12% Similarity=0.229 Sum_probs=45.3
Q ss_pred cEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 65 dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
|+++.-. ....-|..+++.+.. .+|+|....... ..+.+..|..+|+..|-+.+++..++..++...
T Consensus 280 d~~v~~S-~~Eg~~~~~lEAma~-----G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 280 QLSLLTS-QSEGFGLSLMEALSH-----GLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred hEEEecc-cccccChHHHHHHhC-----CCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcCH
Confidence 3444433 344556777777654 788886543211 234456788999999999999999999988653
No 197
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=76.86 E-value=7.2 Score=28.73 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=45.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccC--CCCCHHHHHHHHHhh
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM--PGMTGYDLLRKIKES 88 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~--~~~~g~~~~~~l~~~ 88 (187)
||+||+.-.+-..+.+.|...|..+..+.+.+..++.+... .||.||+.--- |...+. ....++..
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~-----------~~d~iils~GPg~p~~~~~-~~~~~~~~ 69 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDAL-----------KPQKIVISPGPCTPDEAGI-SLDVIRHY 69 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc-----------CCCEEEEcCCCCChHHCCc-cHHHHHHh
Confidence 89999999999999999998888777765443223333222 34466665422 212222 22233332
Q ss_pred cCCCCCcEEEEeC
Q 046192 89 ASLKDIPVVIMSS 101 (187)
Q Consensus 89 ~~~~~~~iI~ls~ 101 (187)
. ...|++-+.-
T Consensus 70 ~--~~~PiLGICl 80 (187)
T PRK08007 70 A--GRLPILGVCL 80 (187)
T ss_pred c--CCCCEEEECH
Confidence 2 2789887764
No 198
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.64 E-value=30 Score=27.56 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=56.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC-ceE-EEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 10 HVLAVDDSIIDRKLIERLLKT----SS-YQV-TAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~----~~-~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
.|+|-|+|-.....+...+++ .+ ..+ +.+.+.+++.+.+. ..+|+|.+|- |+-.+--+.++
T Consensus 172 ~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~------------~gaDiI~LDn-m~~e~vk~av~ 238 (289)
T PRK07896 172 AALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLA------------EGAELVLLDN-FPVWQTQEAVQ 238 (289)
T ss_pred eeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHH------------cCCCEEEeCC-CCHHHHHHHHH
Confidence 467777775554444444432 22 233 34789999988873 2367999993 32222223333
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
.++...+ + ..+..|..-+.+.+.+....|+|.+
T Consensus 239 ~~~~~~~--~-v~ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 239 RRDARAP--T-VLLESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred HHhccCC--C-EEEEEECCCCHHHHHHHHhcCCCEE
Confidence 3443332 3 3566777778888988889998754
No 199
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=76.50 E-value=34 Score=26.67 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEecc-CCC-CCHHHHHHHHHhhcCCCCC
Q 046192 18 IIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC-MPG-MTGYDLLRKIKESASLKDI 94 (187)
Q Consensus 18 ~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~-~~~-~~g~~~~~~l~~~~~~~~~ 94 (187)
+.....+....+..|..+.. +.+.+++..... . .+|++-+.-. +.. ...++....+....| ...
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~-~-----------gadiIgin~rdl~~~~~d~~~~~~l~~~~p-~~~ 212 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALK-L-----------GAPLIGINNRNLKTFEVDLETTERLAPLIP-SDR 212 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-c-----------CCCEEEECCCCcccccCCHHHHHHHHHhCC-CCC
Confidence 43444555555667876654 788888755442 2 3456665421 101 112566666666544 245
Q ss_pred cEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 95 PVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 95 ~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
++|..+.-.+.+.+..+...|+++++.
T Consensus 213 ~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 213 LVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred EEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 888888888999999999999999764
No 200
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=76.35 E-value=35 Score=26.78 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=64.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCC--ceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccC-CCCCHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSS--YQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM-PGMTGYDLL 82 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~--~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~ 82 (187)
..+++++++.+.. ..+.+..+..+ -.|.. .-+.++..+.+. ..|++++-... ...-|..++
T Consensus 218 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~-------------~ad~~i~ps~~~~e~~g~~~~ 283 (357)
T cd03795 218 DAPLVIVGEGPLE-AELEALAAALGLLDRVRFLGRLDDEEKAALLA-------------ACDVFVFPSVERSEAFGIVLL 283 (357)
T ss_pred CcEEEEEeCChhH-HHHHHHHHhcCCcceEEEcCCCCHHHHHHHHH-------------hCCEEEeCCcccccccchHHH
Confidence 3567777766543 34555554333 12332 333444555552 23466653322 245577777
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+.+.. .+|+|........+.... .|..+++..|-+.+++.+++..++...
T Consensus 284 Ea~~~-----g~Pvi~~~~~~~~~~i~~---~~~~g~~~~~~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 284 EAMAF-----GKPVISTEIGTGGSYVNL---HGVTGLVVPPGDPAALAEAIRRLLEDP 333 (357)
T ss_pred HHHHc-----CCCEEecCCCCchhHHhh---CCCceEEeCCCCHHHHHHHHHHHHHCH
Confidence 77765 778886433333333322 377889999999999999999998653
No 201
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=76.35 E-value=50 Score=28.49 Aligned_cols=99 Identities=11% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH----H---HHHHHHHhh
Q 046192 16 DSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG----Y---DLLRKIKES 88 (187)
Q Consensus 16 ~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g----~---~~~~~l~~~ 88 (187)
-+....+.+...|...||.++.. ....|+++++...--.+. . ..++.+++.
T Consensus 25 ~N~~dse~~~~~L~~~G~~~~~~----------------------~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~~ 82 (502)
T PRK14326 25 MNVHDSERLAGLLEAAGYVRAAE----------------------GQDADVVVFNTCAVRENADNRLYGNLGHLAPVKRA 82 (502)
T ss_pred CcHHHHHHHHHHHHHCCCEECCC----------------------cCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHHh
Confidence 45566677888888778766431 113579999997754433 2 444555665
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHH-hCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLE-EGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~-~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.| +.+|++-...... .-.+.++ ...-|++..+.....+...+..+..+
T Consensus 83 ~p--~~~VvvgGc~a~~-~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~~~~ 131 (502)
T PRK14326 83 NP--GMQIAVGGCLAQK-DRDTILKRAPWVDVVFGTHNIGSLPTLLERARHN 131 (502)
T ss_pred CC--CCEEEEECccccc-CHHHHHhhCCCCeEEECCCCHHHHHHHHHHHhhC
Confidence 55 6666655443322 2223332 23345788887877777777766543
No 202
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=76.09 E-value=29 Score=26.83 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 046192 20 DRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIM 99 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~l 99 (187)
.-..|.+..+..|.......-..++++.+.... +-.+-+...+.+-+.+++.+.+. +.|||+-
T Consensus 57 ~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~-------------~~~~KIaS~dl~n~~lL~~~A~t----gkPvIlS 119 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFFSTPFDEESVDFLEELG-------------VPAYKIASGDLTNLPLLEYIAKT----GKPVILS 119 (241)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT--------------SEEEE-GGGTT-HHHHHHHHTT-----S-EEEE
T ss_pred HHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcC-------------CCEEEeccccccCHHHHHHHHHh----CCcEEEE
Confidence 345567777778987777666677777774432 44555566677888999999874 7799999
Q ss_pred eCCCChhHHHHHHH----hCCCcee------eCCCChHHH-HHHHHHHhhh
Q 046192 100 SSENIPSRINRCLE----EGAEEFF------LKPVQLADV-NKLKPHLMKG 139 (187)
Q Consensus 100 s~~~~~~~~~~a~~----~ga~~yl------~kP~~~~~l-~~~i~~~~~~ 139 (187)
|+.++.+.+.+|.+ .|..++. ..|..++++ +.++..+.+.
T Consensus 120 TG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~ 170 (241)
T PF03102_consen 120 TGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKER 170 (241)
T ss_dssp -TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHh
Confidence 99888887776653 4554432 226666666 4555555543
No 203
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=75.97 E-value=31 Score=25.92 Aligned_cols=84 Identities=18% Similarity=0.321 Sum_probs=53.7
Q ss_pred HHHHHHhCC-ceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEecc-------CCCCCHHHHHHHHHhhcCCCCC
Q 046192 24 IERLLKTSS-YQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC-------MPGMTGYDLLRKIKESASLKDI 94 (187)
Q Consensus 24 l~~~l~~~~-~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~-------~~~~~g~~~~~~l~~~~~~~~~ 94 (187)
+.+.+++.+ ..+. .+.+.+++..... ..+|.+.+... ......++.++.+++.. ++
T Consensus 114 ~i~~~~~~g~~~iiv~v~t~~ea~~a~~------------~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~---~i 178 (219)
T cd04729 114 LIKRIHEEYNCLLMADISTLEEALNAAK------------LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GI 178 (219)
T ss_pred HHHHHHHHhCCeEEEECCCHHHHHHHHH------------cCCCEEEccCccccccccCCCCCCHHHHHHHHHhc---CC
Confidence 333333444 4433 3567777655442 23566654321 11234568888888754 68
Q ss_pred cEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 95 PVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 95 ~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
|++....-.+.+.+.+++..||++.+.-
T Consensus 179 pvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 179 PVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred CEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 9998888888999999999999987653
No 204
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=75.92 E-value=17 Score=31.33 Aligned_cols=56 Identities=11% Similarity=0.253 Sum_probs=40.5
Q ss_pred cccEEEEeccCCC-CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPG-MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..|+|.+|..-.. ..-++.+++||+..| +.+|| ..+-.+.+....+.++|||....
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p--~~~vi-~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYP--ELDVI-GGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCC--CCcEE-EecCCCHHHHHHHHHcCcCEEEE
Confidence 4779999995322 223488999998765 66665 44456788899999999998743
No 205
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=75.79 E-value=34 Score=26.29 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=63.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
.++++++++.+. ...+.......+. .+......++....+. ..|+++.-... ..-|..+++.+
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-------------~ad~~i~ps~~-e~~~~~~~Ea~ 273 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYA-------------KASIFVLTSRF-EGFPMVLLEAM 273 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHH-------------hCCEEEeCccc-cccCHHHHHHH
Confidence 456666665543 2334444444432 2333333344444442 24577765544 34466677777
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.. .+|+|+........ .....|..+++.++.+.+++.+.+..++..
T Consensus 274 a~-----G~Pvi~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~ 319 (348)
T cd03820 274 AF-----GLPVISFDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLMED 319 (348)
T ss_pred Hc-----CCCEEEecCCCchH---hhhccCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 64 77887543322222 334555688999999999999999998754
No 206
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=75.75 E-value=8.4 Score=26.39 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=37.0
Q ss_pred EEEeccCCCCCHHHHHHHHHhhcCCCCCcEEE--EeCCCChhHHHHHHHhCCCceeeCC
Q 046192 67 IITDYCMPGMTGYDLLRKIKESASLKDIPVVI--MSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 67 vi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~--ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
|..-.++..-.+.++....+-..| +++.||- ++.+-+.+.+.+|++-|||+.+.--
T Consensus 4 i~F~C~wcsygaaDlag~~rmqyp-~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~G 61 (132)
T COG1908 4 IAFACNWCSYGAADLAGTSRMQYP-PNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAG 61 (132)
T ss_pred EEEEcccccccchhhhccccccCC-CceEEEEeeccCccCHHHHHHHHHcCCCeEEEec
Confidence 333334444444555555555555 3566654 5788899999999999999977653
No 207
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=75.71 E-value=45 Score=28.10 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC----HHHHH---HHHHhhc
Q 046192 17 SIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT----GYDLL---RKIKESA 89 (187)
Q Consensus 17 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~----g~~~~---~~l~~~~ 89 (187)
+....+.+...|.+.||.++.- ....|+++++....-.. ....+ +.+++.+
T Consensus 13 N~~ds~~~~~~l~~~G~~~~~~----------------------~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~ 70 (437)
T PRK14331 13 NFNDSEKIKGILQTLGYEPADD----------------------WEEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKN 70 (437)
T ss_pred cHHHHHHHHHHHHHCcCEECCC----------------------cccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhC
Confidence 4445566777777777755331 11357999999776433 23333 4555555
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
| +.+|++..................-|++..+-....+.+.+..+..
T Consensus 71 p--~~~ivv~Gc~a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~~~ 117 (437)
T PRK14331 71 P--NALIGVCGCLAQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQAKA 117 (437)
T ss_pred C--CCEEEEEcchhcCChHHHHhcCCCCcEEECCCCHHHHHHHHHHHhc
Confidence 5 6666655433222111111123344788888778787777766543
No 208
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=75.56 E-value=4.6 Score=30.19 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC----CCHHHHHHHHHhhcCCCCCc
Q 046192 22 KLIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG----MTGYDLLRKIKESASLKDIP 95 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~----~~g~~~~~~l~~~~~~~~~~ 95 (187)
..+.. ++..|+.+.. +..+...+..+... +||.|-+|..+.. .....+++.+.......+..
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~~l-----------~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 205 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLASL-----------PPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIK 205 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHHHH-----------CGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhhhc-----------ccccceeecccccccchhhHHHHHHHHHHHhhccccc
Confidence 44444 6678987765 65666666666443 4569999987652 22334555443332211444
Q ss_pred EEEEeCCCChhHHHHHHHhCCCc
Q 046192 96 VVIMSSENIPSRINRCLEEGAEE 118 (187)
Q Consensus 96 iI~ls~~~~~~~~~~a~~~ga~~ 118 (187)
+ +...-.+.+....+.+.|++.
T Consensus 206 v-ia~gVe~~~~~~~l~~~G~~~ 227 (236)
T PF00563_consen 206 V-IAEGVESEEQLELLKELGVDY 227 (236)
T ss_dssp E-EEECE-SHHHHHHHHHTTESE
T ss_pred c-ceeecCCHHHHHHHHHcCCCE
Confidence 4 466667888899999999873
No 209
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=75.44 E-value=5.3 Score=29.73 Aligned_cols=77 Identities=10% Similarity=0.089 Sum_probs=46.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHHHHHhh
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIKES 88 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~~~ 88 (187)
||+||++-.+-..+.+.|++.|+.+..........+.+... .||.||+----.. ..+. ....++..
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~-----------~~d~iIlsgGP~~p~~~~~-~~~~i~~~ 69 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM-----------KPDFLMISPGPCSPNEAGI-SMEVIRYF 69 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC-----------CCCEEEECCCCCChHhCCC-chHHHHHh
Confidence 79999999999999999999998887765443233333222 3556666542211 1111 22333322
Q ss_pred cCCCCCcEEEEeC
Q 046192 89 ASLKDIPVVIMSS 101 (187)
Q Consensus 89 ~~~~~~~iI~ls~ 101 (187)
. ...|++-+.-
T Consensus 70 ~--~~~PvLGICl 80 (195)
T PRK07649 70 A--GKIPIFGVCL 80 (195)
T ss_pred c--CCCCEEEEcH
Confidence 2 2788887764
No 210
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=75.44 E-value=48 Score=27.90 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=54.5
Q ss_pred ceEEEEEeCCHHHH---HHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C--CHHHH
Q 046192 8 QFHVLAVDDSIIDR---KLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M--TGYDL 81 (187)
Q Consensus 8 ~~~ilivd~~~~~~---~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~--~g~~~ 81 (187)
..+|.+++-|+... +.+..+-+..|+.+..+.+..+....+... ..+|+||+|..--. . ...+.
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~----------~~~DlVlIDt~G~~~~d~~~~~~ 320 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL----------RDCDVILIDTAGRSQRDKRLIEE 320 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh----------CCCCEEEEeCCCCCCCCHHHHHH
Confidence 46889999888532 234444444566666666776666666422 24789999974221 1 12222
Q ss_pred HHHHHh-hcCCCCCcEEEEeCCCChhHHHHHH----HhCCCceee
Q 046192 82 LRKIKE-SASLKDIPVVIMSSENIPSRINRCL----EEGAEEFFL 121 (187)
Q Consensus 82 ~~~l~~-~~~~~~~~iI~ls~~~~~~~~~~a~----~~ga~~yl~ 121 (187)
+..+.. ... +.-.++++++........++. ..+.+.++.
T Consensus 321 L~~ll~~~~~-~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~ 364 (424)
T PRK05703 321 LKALIEFSGE-PIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIF 364 (424)
T ss_pred HHHHHhccCC-CCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 333322 211 123466677765555544433 235555543
No 211
>PRK04148 hypothetical protein; Provisional
Probab=75.15 E-value=4.8 Score=28.17 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=29.9
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT 77 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~ 77 (187)
.+++.|+-- +...+...|.+.|++|+.+....++.+.+. ....+.+.-|+--|+.+
T Consensus 18 ~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-----------~~~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 18 KKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAK-----------KLGLNAFVDDLFNPNLE 73 (134)
T ss_pred CEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HhCCeEEECcCCCCCHH
Confidence 345555544 333355555556666666665555555552 22234666666555544
No 212
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=75.04 E-value=28 Score=26.30 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=40.8
Q ss_pred EEEEeccCCC-CCH--HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhC-CCceee
Q 046192 66 LIITDYCMPG-MTG--YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEG-AEEFFL 121 (187)
Q Consensus 66 lvi~d~~~~~-~~g--~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~g-a~~yl~ 121 (187)
+++.+..-.+ ..| +++++.+++.. ..|+|.-..-.+.+.+.++++.| +++.+.
T Consensus 163 ii~~~~~~~g~~~G~d~~~i~~l~~~~---~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 163 IIYTDISRDGTLSGPNVEATRELAAAV---PIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred EEEeeecCcCCcCCCCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 7777775443 234 67888888754 68999988888999999999988 888765
No 213
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=74.51 E-value=22 Score=25.02 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=41.6
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHH-HHHHHHhccCcccccccccccccEEEEeccCCC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGN-KALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG 75 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~ 75 (187)
...+|+|++.......-+..+|.+.|..+..+.+.. +..+.+ ...|+|+.-..-+.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v-------------~~ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKV-------------HDADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHH-------------hhCCEEEEecCCCC
Confidence 456899999999999999999999999998886221 222222 13469999887664
No 214
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=74.45 E-value=58 Score=28.99 Aligned_cols=96 Identities=5% Similarity=0.054 Sum_probs=62.2
Q ss_pred HHHHHHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHHHHHhhcCCCCCc
Q 046192 21 RKLIERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIKESASLKDIP 95 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~~~~~~~~~~ 95 (187)
......+|..-||++.. +.+.+++.+..... ..+++++...-.. ..+.++++.||.... .
T Consensus 512 a~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~s-----------ga~i~viCssD~~Y~~~a~~~~~al~~ag~----~ 576 (619)
T TIGR00642 512 EGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKA-----------GAQVAVLCSSDKVYAQQGLEVAKALKAAGA----K 576 (619)
T ss_pred HHHHHhHHhcCceeeccCCCCCCHHHHHHHHHhc-----------CCCEEEEeCCCcchHHHHHHHHHHHHhCCC----C
Confidence 34455666666788774 46677777777433 3446666654433 457789999988753 3
Q ss_pred EEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHH
Q 046192 96 VVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLK 133 (187)
Q Consensus 96 iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i 133 (187)
.|++...... ..+...+|+|+||.--.+.-+.+..+
T Consensus 577 ~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~L~~~ 612 (619)
T TIGR00642 577 ALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDTLSST 612 (619)
T ss_pred EEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHHHHHH
Confidence 6667776543 43477899999998877765544433
No 215
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=74.39 E-value=40 Score=26.51 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=58.0
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~ 86 (187)
+-++-+.....+...+...|...|..+....+.......+....|+ -|++-+...+ .+-.+.++..+
T Consensus 133 I~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~-----------Dv~i~iS~sG~t~e~i~~a~~ak 201 (281)
T COG1737 133 IYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPG-----------DVVIAISFSGYTREIVEAAELAK 201 (281)
T ss_pred EEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCC-----------CEEEEEeCCCCcHHHHHHHHHHH
Confidence 4455567778888899999999998888887777666556555443 3333444443 45667777777
Q ss_pred hhcCCCCCcEEEEeCCCChhHH
Q 046192 87 ESASLKDIPVVIMSSENIPSRI 108 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~ 108 (187)
+. +.|+|.+|+.......
T Consensus 202 ~~----ga~vIaiT~~~~spla 219 (281)
T COG1737 202 ER----GAKVIAITDSADSPLA 219 (281)
T ss_pred HC----CCcEEEEcCCCCCchh
Confidence 65 6799999998554443
No 216
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=74.05 E-value=16 Score=28.69 Aligned_cols=52 Identities=17% Similarity=0.411 Sum_probs=36.6
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeCC------CChhHHHHHHHhCCCceeeCCCChHHHH
Q 046192 77 TGYDLLRKIKESASLKDIPVVIMSSE------NIPSRINRCLEEGAEEFFLKPVQLADVN 130 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~ls~~------~~~~~~~~a~~~ga~~yl~kP~~~~~l~ 130 (187)
+-+++++.+|+.++ .+|+++++=+ ........+.+.|+++.|.-.+.+++-.
T Consensus 80 ~~lel~~~~r~~~~--~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~ 137 (265)
T COG0159 80 DTLELVEEIRAKGV--KVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESD 137 (265)
T ss_pred HHHHHHHHHHhcCC--CCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHH
Confidence 35567777887665 8899988743 3345577888999999888755555433
No 217
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=73.75 E-value=28 Score=24.40 Aligned_cols=110 Identities=13% Similarity=0.264 Sum_probs=66.0
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSY--QVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
..+.++|+++.+... .+....+..+. .+... ...++..+.+.. .|+++.=... ..-|..++
T Consensus 46 ~~~~l~i~G~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~-------------~di~v~~s~~-e~~~~~~~ 110 (172)
T PF00534_consen 46 PNYKLVIVGDGEYKK-ELKNLIEKLNLKENIIFLGYVPDDELDELYKS-------------SDIFVSPSRN-EGFGLSLL 110 (172)
T ss_dssp TTEEEEEESHCCHHH-HHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH-------------TSEEEE-BSS-BSS-HHHH
T ss_pred CCeEEEEEccccccc-cccccccccccccccccccccccccccccccc-------------ceeccccccc-cccccccc
Confidence 346777777443333 34444444332 23333 233455555532 3466665555 55666777
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+.+.. .+|+|+.. .....+.+..+..+++..|.+.+++...+..++...
T Consensus 111 Ea~~~-----g~pvI~~~----~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 111 EAMAC-----GCPVIASD----IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp HHHHT-----T-EEEEES----STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ccccc-----ccceeecc----ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 77765 66777433 333456667788999999999999999999998764
No 218
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=73.38 E-value=16 Score=28.70 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCC------CChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSE------NIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~------~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.+++++.+|+. + .+|+++++=. .-......+.++|+++.+.-....++..+....+.+
T Consensus 79 ~~~~~~~~r~~-~--~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~ 142 (263)
T CHL00200 79 ILSILSEVNGE-I--KAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNL 142 (263)
T ss_pred HHHHHHHHhcC-C--CCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHH
Confidence 46677777753 3 7898877643 346678899999999999987777776666555543
No 219
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=73.29 E-value=12 Score=29.42 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=37.1
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeC-------CHHHHHHHHhccCcccccccccccccEEEEeccC
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVD-------SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM 73 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~-------~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~ 73 (187)
+||||++.+-.....+.+.|...|+.+.... +.++..+.+...+ ||+||--.-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~-----------pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK-----------PDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH-------------SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC-----------CCeEecccee
Confidence 4899999999999999999998888777652 4455556664444 5577766543
No 220
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=72.90 E-value=50 Score=26.95 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=45.3
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.|+.++- ..+..-|..+++.+.. .+|||..... ...+.+..|.++++..|.+++++.+.+..++..
T Consensus 301 adv~v~~-s~~e~~~~~llEAmA~-----G~PVIas~~~----g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~ 366 (396)
T cd03818 301 SDVHVYL-TYPFVLSWSLLEAMAC-----GCLVVGSDTA----PVREVITDGENGLLVDFFDPDALAAAVIELLDD 366 (396)
T ss_pred CcEEEEc-CcccccchHHHHHHHC-----CCCEEEcCCC----CchhhcccCCceEEcCCCCHHHHHHHHHHHHhC
Confidence 3455542 3355556667777654 7788864332 234556678889999999999999999988865
No 221
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=72.29 E-value=46 Score=26.18 Aligned_cols=105 Identities=12% Similarity=0.234 Sum_probs=59.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
..+++++++.+.. ..+.+.++..+ ..+.......+....+. ..|++++-... ..-|..+++.+
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-------------~ad~~v~~s~~-e~~~~~~~Ea~ 283 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYN-------------AADLFVLSSAW-EGFGLVVAEAM 283 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHH-------------hhceEEecccc-cCCChHHHHHH
Confidence 4667777766543 34555555443 22333333334334442 24576664433 34466777777
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.. .+|+|+.-.....+ .+.. .+++..|.+.+++.+.+..++.
T Consensus 284 a~-----G~PvI~~~~~~~~e----~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 284 AC-----ELPVVATDAGGVRE----VVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred Hc-----CCCEEEecCCChhh----EecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 64 67887532222222 2221 5678889999999999988874
No 222
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=71.91 E-value=27 Score=28.26 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=41.2
Q ss_pred cccEEEEeccCCC-CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPG-MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|+|.+|..... ....++++.+++..| ++||++ ..-.+.+.+..+.++||+....
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p--~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYP--NVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCC--CceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 4779999885543 235678889988765 577765 4556788899999999997653
No 223
>PRK12376 putative translaldolase; Provisional
Probab=71.79 E-value=44 Score=25.79 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=53.7
Q ss_pred HHHHHhCCceEE--EeCCHHHHHHHHhccCcccccccccccccEEEEec-cCCCCCHHHHHHHHHhhcCC-CCCcEEEEe
Q 046192 25 ERLLKTSSYQVT--AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY-CMPGMTGYDLLRKIKESASL-KDIPVVIMS 100 (187)
Q Consensus 25 ~~~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~-~~~~~~g~~~~~~l~~~~~~-~~~~iI~ls 100 (187)
.+.|.+.|+.+. .+.+..+++..+.....+ ...+=-.++.. .-.+.||..+++.+++.... .++.|+ .+
T Consensus 105 i~~L~~~GI~vn~T~vfs~~Qa~~a~~A~ag~------ga~yispfvgR~dd~g~D~~~~i~~i~~i~~~~~~tkIL-aA 177 (236)
T PRK12376 105 IKKLSADGVKLNVTAIFTIEQVKEVVDALTPG------VPAIVSVFAGRIADTGVDPVPLMKEALAICHSKPGVELL-WA 177 (236)
T ss_pred HHHHHHCCCeEEEeeecCHHHHHHHHHHhcCC------CCeEEEEecchhhhcCCCcHHHHHHHHHHHHhCCCcEEE-EE
Confidence 345566676554 377888886544332110 01111222222 23467899988887754421 245554 55
Q ss_pred CCCChhHHHHHHHhCCCceeeCC
Q 046192 101 SENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 101 ~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
+..+...+.++...|++..-..|
T Consensus 178 SiR~~~~v~~a~~~Gad~vTvp~ 200 (236)
T PRK12376 178 SPREVYNIIQADQLGCDIITVTP 200 (236)
T ss_pred ecCCHHHHHHHHHcCCCEEEcCH
Confidence 66688999999999999765544
No 224
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.78 E-value=61 Score=27.44 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=52.9
Q ss_pred eEEEEEeCCHHHHH---HHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC--HHHHHH
Q 046192 9 FHVLAVDDSIIDRK---LIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT--GYDLLR 83 (187)
Q Consensus 9 ~~ilivd~~~~~~~---~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~--g~~~~~ 83 (187)
.+|++++-|+.... .+....+..|..+..+.+..++.+.+. ...+|+|++|. ++.. ..+.++
T Consensus 253 ~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-----------~~~~D~VLIDT--aGr~~rd~~~l~ 319 (432)
T PRK12724 253 KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-----------RDGSELILIDT--AGYSHRNLEQLE 319 (432)
T ss_pred CeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-----------hCCCCEEEEeC--CCCCccCHHHHH
Confidence 57888888873332 233333444555555545555666552 23578999997 3321 122333
Q ss_pred HHHh----hcCC-CCCcEEEEeCCCChhHHHHHHH----hCCCcee-eC
Q 046192 84 KIKE----SASL-KDIPVVIMSSENIPSRINRCLE----EGAEEFF-LK 122 (187)
Q Consensus 84 ~l~~----~~~~-~~~~iI~ls~~~~~~~~~~a~~----~ga~~yl-~k 122 (187)
.+.+ ..+. +.-.++++++....+...++.+ .|.++.+ +|
T Consensus 320 eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 320 RMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred HHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEc
Confidence 3322 2111 1345777777766655555543 4566664 44
No 225
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=71.60 E-value=21 Score=30.52 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=42.4
Q ss_pred cccEEEEeccCCC-CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 63 QVNLIITDYCMPG-MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 63 ~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
.+|++++|..... ..-++.++.+++..| ++|+++ ..-.+.+.+..+.++||+..-
T Consensus 240 gvdvivvD~a~g~~~~vl~~i~~i~~~~p--~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 240 GVDVLVVDTAHGHSEGVLDRVREIKAKYP--DVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHhhCC--CCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 4679999975433 456678889988765 788775 777789999999999998763
No 226
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=71.55 E-value=42 Score=25.71 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=43.3
Q ss_pred cEEEEeccCCCC-C--HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 65 NLIITDYCMPGM-T--GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 65 dlvi~d~~~~~~-~--g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+++.|+...++ . .+++++.+.+.. ++|+++-..-.+.+.+.++++.|+++.+.
T Consensus 164 ~ii~tdi~~dGt~~G~~~~li~~l~~~~---~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 164 GIIYTDIAKDGKMSGPNFELTGQLVKAT---TIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred EEEEecccCcCCCCccCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 399999976653 3 356778887753 78999998889999999999999998875
No 227
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=71.26 E-value=49 Score=26.08 Aligned_cols=109 Identities=13% Similarity=0.097 Sum_probs=61.5
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
..++.++++.+.. ..+...++..+. .+......++..+.+. ..|++++-... ..-|..+++.+
T Consensus 223 ~~~l~ivG~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-------------~adi~v~ps~~-E~~~~~~lEAm 287 (358)
T cd03812 223 NAKLLLVGDGELE-EEIKKKVKELGLEDKVIFLGVRNDVPELLQ-------------AMDVFLFPSLY-EGLPLVLIEAQ 287 (358)
T ss_pred CeEEEEEeCCchH-HHHHHHHHhcCCCCcEEEecccCCHHHHHH-------------hcCEEEecccc-cCCCHHHHHHH
Confidence 4677777765532 345555544432 2333222333334432 24576654432 44577777777
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
.. .+|||........+ .+.. ..+|+..+-+++++.+++..++....
T Consensus 288 a~-----G~PvI~s~~~~~~~----~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 288 AS-----GLPCILSDTITKEV----DLTD-LVKFLSLDESPEIWAEEILKLKSEDR 333 (358)
T ss_pred Hh-----CCCEEEEcCCchhh----hhcc-CccEEeCCCCHHHHHHHHHHHHhCcc
Confidence 65 78898654433332 2333 23577777678999999999987644
No 228
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=71.23 E-value=32 Score=26.27 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CCHH-HHHHHHHhhcCCCCC
Q 046192 20 DRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MTGY-DLLRKIKESASLKDI 94 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~-~~~~~l~~~~~~~~~ 94 (187)
=...+...|+..||+++-. ...++.++.....+| |+|-...-|.. +.+. ++.+.|++.+- .-
T Consensus 120 Gk~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~-----------d~v~~SalMTttm~~~~~viE~L~eeGi--Rd 186 (227)
T COG5012 120 GKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKP-----------DLVSMSALMTTTMIGMKDVIELLKEEGI--RD 186 (227)
T ss_pred HHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHHcCC-----------cEEechHHHHHHHHHHHHHHHHHHHcCC--cc
Confidence 3466777888889999863 356678888855555 48888776653 3443 58888998876 56
Q ss_pred cEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 95 PVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 95 ~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
|+++..... +-...-+-+.|||.|---+
T Consensus 187 ~v~v~vGGA-pvtq~~a~~iGAD~~~~dA 214 (227)
T COG5012 187 KVIVMVGGA-PVTQDWADKIGADAYAEDA 214 (227)
T ss_pred CeEEeecCc-cccHHHHHHhCCCccCcCH
Confidence 777664432 2222334567899887654
No 229
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=71.11 E-value=42 Score=25.29 Aligned_cols=56 Identities=18% Similarity=0.348 Sum_probs=40.3
Q ss_pred ccEEEEeccCCC-------CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 64 VNLIITDYCMPG-------MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 64 ~dlvi~d~~~~~-------~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
+|.++++..-++ ....++++.+++.. ++||++...-.+.+.+.+++..|+++...-
T Consensus 123 ad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~---~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 123 ADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV---DIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred CCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh---CCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 567777543221 13567888888754 689998888777788999999999987543
No 230
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=71.02 E-value=9.7 Score=30.15 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhhcCCCCCcEE--EEeCCCChhHHHHHHHhCCCcee-----eCCCChHHHHHHHHHHhhh
Q 046192 77 TGYDLLRKIKESASLKDIPVV--IMSSENIPSRINRCLEEGAEEFF-----LKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI--~ls~~~~~~~~~~a~~~ga~~yl-----~kP~~~~~l~~~i~~~~~~ 139 (187)
.++++++.+++.. .+||+ ....-.+++.+..+++.|+++++ .|.-++.+....+......
T Consensus 184 ~~~elLkei~~~~---~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKLG---KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHhC---CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 5888999998854 68998 55666689999999999999874 3444666665555555544
No 231
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=70.90 E-value=30 Score=26.37 Aligned_cols=53 Identities=25% Similarity=0.472 Sum_probs=41.8
Q ss_pred EEEEeccCCC-CCH--HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 66 LIITDYCMPG-MTG--YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 66 lvi~d~~~~~-~~g--~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+++.|+.--+ +.| +++++.+++.. +.|+|.-..-.+.+.+.++.+.|+++.+.
T Consensus 164 ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 164 IILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred EEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 9999998776 333 46778887765 78999998888999999999999988765
No 232
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=70.87 E-value=46 Score=25.64 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=44.6
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.|+++.-... +..|..+++.+.. ++|+|...... ..+.+..+-.+++..+.+.+++.+.+..++...
T Consensus 276 ~di~i~~~~~-~~~~~~~~Ea~~~-----g~pvI~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 276 ADVFVLPSLY-EGFGLVLLEAMAA-----GLPVVASDVGG----IPEVVEDGETGLLVPPGDPEALAEAILRLLDDP 342 (374)
T ss_pred cCEEEecchh-ccccchHHHHHHc-----CCcEEEeCCCC----hhHHhcCCcceEEeCCCCHHHHHHHHHHHHcCh
Confidence 4576655444 4455667776654 77887544332 233345577889999999999999999887653
No 233
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=70.87 E-value=44 Score=29.48 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=62.3
Q ss_pred HHHHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CC-HHHHHHHHHhhcCCCCCcE
Q 046192 21 RKLIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MT-GYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~-g~~~~~~l~~~~~~~~~~i 96 (187)
....-..|++.|+.+.. +.++...+..+... ..-++|.|=+|-.+-. .. .-.+++.+......-++.+
T Consensus 541 ~~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~--------~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~v 612 (660)
T PRK11829 541 ALRLLRELQGLGLLIALDDFGIGYSSLRYLNHL--------KSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRV 612 (660)
T ss_pred HHHHHHHHHhCCCEEEEECCCCchhhHHHHhcc--------CCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeE
Confidence 34455566778988776 77888888888440 0045668888853321 11 1123333332221114444
Q ss_pred EEEeCCCChhHHHHHHHhCCC---c-eeeCCCChHHHHHHH
Q 046192 97 VIMSSENIPSRINRCLEEGAE---E-FFLKPVQLADVNKLK 133 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~~~l~~~i 133 (187)
| ...-.+.+....+.+.|++ + |+.||.+..++....
T Consensus 613 i-aegVEt~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 613 M-AEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred E-EecCCCHHHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 4 4555678888888899985 3 588999988875543
No 234
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=70.84 E-value=46 Score=25.68 Aligned_cols=89 Identities=9% Similarity=0.064 Sum_probs=51.6
Q ss_pred HHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEec-cCCCCCHHHHHHHHHhhcCC-CCCcEEEEeC
Q 046192 26 RLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY-CMPGMTGYDLLRKIKESASL-KDIPVVIMSS 101 (187)
Q Consensus 26 ~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~-~~~~~~g~~~~~~l~~~~~~-~~~~iI~ls~ 101 (187)
+.|...|+.+.. +.+..+++........+ ...+=-.++.. .--+.||..+++.+++.... .++.|+ .++
T Consensus 106 ~~L~~~GI~vn~T~vfs~~Qa~~aa~A~~aG------~a~yispfvgR~dd~g~D~~~~i~~i~~i~~~~~~tkIL-aAS 178 (236)
T TIGR02134 106 QKLSADGITLNVTALTTIEQVEKVCQSFTDG------VPGIVSVFAGRIADTGVDPEPHMREALEIVAQKPGVELL-WAS 178 (236)
T ss_pred HHHHHCCCcEEeehcCCHHHHHHHHHHHhCC------CCeEEEEecchhhhcCCCcHHHHHHHHHHHHhCCCcEEE-EEc
Confidence 345566765543 67777777643211111 01122222222 24468999999988665422 255555 555
Q ss_pred CCChhHHHHHHHhCCCceee
Q 046192 102 ENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 102 ~~~~~~~~~a~~~ga~~yl~ 121 (187)
-.+...+.++...|++.+-.
T Consensus 179 ~R~~~~v~~a~~~Gad~vTv 198 (236)
T TIGR02134 179 PRELFNIIQADRIGCDIITC 198 (236)
T ss_pred cCCHHHHHHHHHcCCCEEEC
Confidence 66889999999999997443
No 235
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=70.81 E-value=56 Score=26.60 Aligned_cols=108 Identities=11% Similarity=0.130 Sum_probs=67.4
Q ss_pred eEEEEEeCC---H-HHHHHHHHHHHhCCc--eEEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHH
Q 046192 9 FHVLAVDDS---I-IDRKLIERLLKTSSY--QVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYD 80 (187)
Q Consensus 9 ~~ilivd~~---~-~~~~~l~~~l~~~~~--~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~ 80 (187)
.+++++++. . .....+....+..+. .|... -+.++..+.+. ..|+.++-.. ...-|..
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~-------------~ad~~v~ps~-~E~~g~~ 318 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYR-------------AADVVAVPSY-NESFGLV 318 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHH-------------hCCEEEECCC-CCCcChH
Confidence 667777641 1 334556666665553 24332 23455555552 2457666533 3455667
Q ss_pred HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 81 LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+++.+.. .+|||...... ..+.+..|..+++..|-+.+++.+++.+++..
T Consensus 319 ~lEAma~-----G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~ 368 (405)
T TIGR03449 319 AMEAQAC-----GTPVVAARVGG----LPVAVADGETGLLVDGHDPADWADALARLLDD 368 (405)
T ss_pred HHHHHHc-----CCCEEEecCCC----cHhhhccCCceEECCCCCHHHHHHHHHHHHhC
Confidence 7777764 78898655433 23445678888999999999999999888764
No 236
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=70.72 E-value=30 Score=27.41 Aligned_cols=70 Identities=11% Similarity=0.151 Sum_probs=50.4
Q ss_pred ccEEEEecc-CCC-CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 64 VNLIITDYC-MPG-MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 64 ~dlvi~d~~-~~~-~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
.|.+++--+ ..- .+--+.+++.|+..| .++.|-+ ...+.+...+|+++|+|-.++-.++++++.+++..+
T Consensus 158 sDavliKDNHia~~g~i~~Av~~aR~~~~--~~~kIEV-Evesle~~~eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 158 SDAVLIKDNHIAAAGSITEAVRRARAAAP--FTKKIEV-EVESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred cceEEehhhHHHHhccHHHHHHHHHHhCC--CCceEEE-EcCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 345554433 322 234457888888765 5554433 345789999999999999999999999999998886
No 237
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=70.49 E-value=12 Score=29.63 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=41.5
Q ss_pred CHHHHHHHHHhhcCCCCCcEE--EEeCCCChhHHHHHHHhCCCceee-----CCCChHHHHHHHHHHhh
Q 046192 77 TGYDLLRKIKESASLKDIPVV--IMSSENIPSRINRCLEEGAEEFFL-----KPVQLADVNKLKPHLMK 138 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI--~ls~~~~~~~~~~a~~~ga~~yl~-----kP~~~~~l~~~i~~~~~ 138 (187)
.++++++.+.+.. .+||| ....-.+++.+..+++.|+++++. +.-++.+....+...+.
T Consensus 181 ~d~elLk~l~~~~---~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 181 APYELVKETAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred CCHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 4778899988864 68997 566666899999999999998753 22345555444444443
No 238
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=70.45 E-value=39 Score=24.68 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=40.1
Q ss_pred cccEEEEeccCCC--------CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPG--------MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~--------~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|.+.++--.+. ..|++.++.+.+..+ .+||+++..- +.+.+..+...|++++..
T Consensus 116 g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~--~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 116 GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI--DIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 4678887654431 237888888877654 6898877665 578888999999987643
No 239
>PRK01362 putative translaldolase; Provisional
Probab=70.43 E-value=45 Score=25.31 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=50.9
Q ss_pred HHHHhCCceEE--EeCCHHHHHHHHhccCcccccccccccccEE---EEeccCCCCCHHHHHHHHHhhcCCCC-CcEEEE
Q 046192 26 RLLKTSSYQVT--AVDSGNKALEFLGLLNEDEQTNSQVIQVNLI---ITDYCMPGMTGYDLLRKIKESASLKD-IPVVIM 99 (187)
Q Consensus 26 ~~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlv---i~d~~~~~~~g~~~~~~l~~~~~~~~-~~iI~l 99 (187)
+.|.+.|+.+. .+.+..+++..... ..+.| +=-+.-.+.+|+++++.+.+.....+ -.-|+.
T Consensus 95 ~~L~~~Gi~v~~T~vfs~~Qa~~Aa~a------------Ga~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila 162 (214)
T PRK01362 95 KALSKEGIKTNVTLIFSANQALLAAKA------------GATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA 162 (214)
T ss_pred HHHHHCCCceEEeeecCHHHHHHHHhc------------CCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 34555665444 36677777666532 12222 22223346789998888766542112 345556
Q ss_pred eCCCChhHHHHHHHhCCCceeeC
Q 046192 100 SSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 100 s~~~~~~~~~~a~~~ga~~yl~k 122 (187)
++..+...+.++...|++.+-.-
T Consensus 163 AS~r~~~~v~~~~~~G~d~iTi~ 185 (214)
T PRK01362 163 ASVRHPMHVLEAALAGADIATIP 185 (214)
T ss_pred eecCCHHHHHHHHHcCCCEEecC
Confidence 66678999999999999955443
No 240
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=70.06 E-value=30 Score=23.18 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEE-EeccCCCCCHHHHHHHHHhhcCCCCCc
Q 046192 17 SIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLII-TDYCMPGMTGYDLLRKIKESASLKDIP 95 (187)
Q Consensus 17 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi-~d~~~~~~~g~~~~~~l~~~~~~~~~~ 95 (187)
.......+...+...|..+....+.......+.... +-|++| +...-...+-.+.++..++. +.|
T Consensus 11 S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~----------~~d~vi~iS~sG~t~~~~~~~~~a~~~----g~~ 76 (128)
T cd05014 11 SGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVT----------PGDVVIAISNSGETDELLNLLPHLKRR----GAP 76 (128)
T ss_pred hHHHHHHHHHHhhcCCCceEEcccchhhccccCcCC----------CCCEEEEEeCCCCCHHHHHHHHHHHHC----CCe
Confidence 344556677777777876766654432222222111 223443 33322234566777777764 679
Q ss_pred EEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 96 VVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 96 iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
+|.+|+..+..... .++..+.-|
T Consensus 77 vi~iT~~~~s~la~-----~ad~~l~~~ 99 (128)
T cd05014 77 IIAITGNPNSTLAK-----LSDVVLDLP 99 (128)
T ss_pred EEEEeCCCCCchhh-----hCCEEEECC
Confidence 99999976654442 355555554
No 241
>CHL00101 trpG anthranilate synthase component 2
Probab=69.94 E-value=19 Score=26.51 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=26.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCH
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSG 41 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~ 41 (187)
|||+|..-.+-..+.+.|+..|+.+..+...
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~ 32 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRND 32 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECC
Confidence 8999999999999999999999878776543
No 242
>COG2771 CsgD DNA-binding HTH domain-containing proteins [Transcription]
Probab=69.92 E-value=0.5 Score=27.93 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.9
Q ss_pred hhhhhcccccccCCCCCCCccC
Q 046192 165 RTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 165 ~~~~~e~~~l~l~~~g~~~~ei 186 (187)
.++.+|.+++.+...|.|++||
T Consensus 4 ~Lt~rE~~v~~l~~~G~s~~ei 25 (65)
T COG2771 4 DLTPREREILRLVAQGKSNKEI 25 (65)
T ss_pred cCCHHHHHHHHHHHCCCCHHHH
Confidence 4788999999999999999886
No 243
>PRK13566 anthranilate synthase; Provisional
Probab=69.91 E-value=20 Score=32.37 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=53.2
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccC--C-CCCHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM--P-GMTGYDLLR 83 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~--~-~~~g~~~~~ 83 (187)
...+|+|||........+.+.|++.|+.|..+..... .+.+.. ..+|.||+---- | +..-.++++
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~-----------~~~DgVVLsgGpgsp~d~~~~~lI~ 592 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR-----------VNPDLVVLSPGPGRPSDFDCKATID 592 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh-----------cCCCEEEECCCCCChhhCCcHHHHH
Confidence 4579999999988889999999999988887654321 122211 235677763211 1 112334444
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHH
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCL 112 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~ 112 (187)
...+ .+.||+-+.-. ...+..++
T Consensus 593 ~a~~----~~iPILGIClG--~QlLa~al 615 (720)
T PRK13566 593 AALA----RNLPIFGVCLG--LQAIVEAF 615 (720)
T ss_pred HHHH----CCCcEEEEehh--HHHHHHHc
Confidence 4433 27899887753 44444443
No 244
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=69.84 E-value=27 Score=26.49 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=43.4
Q ss_pred cEEEEeccCCCC-C--HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 65 NLIITDYCMPGM-T--GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 65 dlvi~d~~~~~~-~--g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+++.|+.-.+. . .+++++.+.+.. ..|+++-..-.+.+.+.++...|+++.+.
T Consensus 156 ~ii~tdI~~dGt~~G~d~eli~~i~~~~---~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 156 GLIVLDIHSVGTMKGPNLELLTKTLELS---EHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred EEEEEECCccccCCCCCHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 488899977552 3 467888888763 78999888888999999999999998765
No 245
>PLN02775 Probable dihydrodipicolinate reductase
Probab=69.82 E-value=55 Score=26.08 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCC------------------------HHHHHHHHhccCccccccccc
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDS------------------------GNKALEFLGLLNEDEQTNSQV 61 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~------------------------~~~a~~~l~~~~~~~~~~~~~ 61 (187)
.+.++|++..-.-.....+...+.+.++.++.+.+ .++.+..+ ..
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~-----------~~ 77 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSV-----------KA 77 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHh-----------hc
Confidence 34589999999998888888777667777765322 11111111 11
Q ss_pred ccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHh-CCCceeeCCCChHH
Q 046192 62 IQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEE-GAEEFFLKPVQLAD 128 (187)
Q Consensus 62 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~-ga~~yl~kP~~~~~ 128 (187)
..+|+|++|+..|...- +.++...+. .+|+|+=|..-+.+...+..+. +.--++.-+|+..-
T Consensus 78 ~~~~~VvIDFT~P~a~~-~~~~~~~~~----g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiGv 140 (286)
T PLN02775 78 EYPNLIVVDYTLPDAVN-DNAELYCKN----GLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQV 140 (286)
T ss_pred cCCCEEEEECCChHHHH-HHHHHHHHC----CCCEEEECCCCCHHHHHHHHhcCCccEEEECcccHHH
Confidence 24779999999886432 334444332 5677776665555555444443 44445666666443
No 246
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=69.75 E-value=34 Score=26.15 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=40.2
Q ss_pred EEEEeccCCC-CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 66 LIITDYCMPG-MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 66 lvi~d~~~~~-~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+++.|+.-.+ +.|++ .+.+..+ +.|+|.-..-.+.+...++...|+++.+.
T Consensus 159 ii~t~i~~dGt~~G~d---~l~~~~~--~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 159 FIYTSIERDGTLTGIE---EIERFWG--DEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred EEEEeccchhcccCHH---HHHHhcC--CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 8999998877 47877 4433323 78999999889999999999999998654
No 247
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=69.56 E-value=69 Score=27.11 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=56.0
Q ss_pred ceEEEEEeCCHHH---HHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH-
Q 046192 8 QFHVLAVDDSIID---RKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR- 83 (187)
Q Consensus 8 ~~~ilivd~~~~~---~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~- 83 (187)
..+|.+++-|+.. .+.+...-+..|+.+..+.+..+....+...+. ...+|+||+|..--...-.+.++
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~-------~~~~DvVLIDTaGRs~kd~~lm~E 341 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE-------EARVDYILIDTAGKNYRASETVEE 341 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh-------ccCCCEEEEeCccccCcCHHHHHH
Confidence 3578888888753 334444444567777777777666665533211 12478999998432222223333
Q ss_pred ---HHHhhcCCCCCcEEEEeCCCChhH---HHHHH-HhCCCceeeC
Q 046192 84 ---KIKESASLKDIPVVIMSSENIPSR---INRCL-EEGAEEFFLK 122 (187)
Q Consensus 84 ---~l~~~~~~~~~~iI~ls~~~~~~~---~~~a~-~~ga~~yl~k 122 (187)
.++...| +-.++++++...... +...| ..|.+++|.-
T Consensus 342 L~~~lk~~~P--devlLVLsATtk~~d~~~i~~~F~~~~idglI~T 385 (436)
T PRK11889 342 MIETMGQVEP--DYICLTLSASMKSKDMIEIITNFKDIHIDGIVFT 385 (436)
T ss_pred HHHHHhhcCC--CeEEEEECCccChHHHHHHHHHhcCCCCCEEEEE
Confidence 3333333 444566665433322 33333 3466777543
No 248
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=69.51 E-value=42 Score=25.18 Aligned_cols=58 Identities=7% Similarity=0.043 Sum_probs=42.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEE-eCCHHHHHHHHhccCcccccccccccccEEEEecc
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC 72 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~ 72 (187)
.-+|.-+|-++...+..+..++..|+ .+.. ..+..+.+..+.... ...+||+|++|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-------~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG-------EEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT-------TTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc-------CCCceeEEEEccc
Confidence 46899999999999999999998775 4443 566777776663221 1247999999985
No 249
>PRK13870 transcriptional regulator TraR; Provisional
Probab=69.40 E-value=0.61 Score=35.83 Aligned_cols=23 Identities=13% Similarity=-0.064 Sum_probs=21.3
Q ss_pred hhhhhhcccccccCCCCCCCccC
Q 046192 164 DRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
..+++||.|+|.+.++|+|..||
T Consensus 172 ~~LT~RE~E~L~W~A~GKT~~EI 194 (234)
T PRK13870 172 AWLDPKEATYLRWIAVGKTMEEI 194 (234)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHH
Confidence 46999999999999999999987
No 250
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.30 E-value=55 Score=25.93 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=60.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC-ceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 10 HVLAVDDSIIDRKLIERLLKT----SS-YQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~----~~-~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
.|||-|+|..+. .+...++. .+ ..+. .+.+.+++.+.+. ..+|+|.+|-..|. +--+.++
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~------------agaDiI~LDn~~~e-~l~~~v~ 221 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK------------AGADIIMLDNMTPE-EIREVIE 221 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH------------cCcCEEEECCCCHH-HHHHHHH
Confidence 378888887665 56666643 12 2343 3789999988874 23679999975432 2223444
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
.++..+. .....+..|..-+.+.+.+....|+|.+
T Consensus 222 ~l~~~~~-~~~~~leaSGGI~~~ni~~yA~tGvD~I 256 (278)
T PRK08385 222 ALKREGL-RERVKIEVSGGITPENIEEYAKLDVDVI 256 (278)
T ss_pred HHHhcCc-CCCEEEEEECCCCHHHHHHHHHcCCCEE
Confidence 4554431 1223566677778888888889998854
No 251
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=69.04 E-value=14 Score=29.45 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhhcCCCCCcEE--EEeCCCChhHHHHHHHhCCCceee-----CCCChHHHHHHHHHHhhhh
Q 046192 77 TGYDLLRKIKESASLKDIPVV--IMSSENIPSRINRCLEEGAEEFFL-----KPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI--~ls~~~~~~~~~~a~~~ga~~yl~-----kP~~~~~l~~~i~~~~~~~ 140 (187)
.++++++.+++.. .+||+ ....-.+++.+..+++.|+++++. +.-++.+....+.......
T Consensus 190 ~~~elL~ei~~~~---~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~ 257 (293)
T PRK04180 190 APYELVKEVAELG---RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHY 257 (293)
T ss_pred CCHHHHHHHHHhC---CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc
Confidence 5778889888854 68998 566666899999999999998743 3346666666655555443
No 252
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=69.02 E-value=15 Score=28.82 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=38.3
Q ss_pred ccEEEEeccCCC---CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHH----HHHhCCCceeeC
Q 046192 64 VNLIITDYCMPG---MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINR----CLEEGAEEFFLK 122 (187)
Q Consensus 64 ~dlvi~d~~~~~---~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~----a~~~ga~~yl~k 122 (187)
.|++=+. +|. +.--+.+..+.+.....++|.|++|+..+.....+ |+++||+++|.-
T Consensus 200 advlKve--vPvyveGe~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~G 263 (306)
T COG3684 200 ADVLKVE--VPVYVEGEQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAG 263 (306)
T ss_pred CceEEee--cceeccCccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEec
Confidence 4544444 443 22345666666655445899999999888776544 778999999864
No 253
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=68.80 E-value=21 Score=29.25 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=40.5
Q ss_pred cccEEEEeccCCCC-CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGM-TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..|++++|...... .-.+.++.+++..| ++||| ..+-.+.+-....+++||+....
T Consensus 120 gvD~ivID~a~g~s~~~~~~ik~ik~~~~--~~~vi-aGNV~T~e~a~~L~~aGad~vkV 176 (352)
T PF00478_consen 120 GVDVIVIDSAHGHSEHVIDMIKKIKKKFP--DVPVI-AGNVVTYEGAKDLIDAGADAVKV 176 (352)
T ss_dssp T-SEEEEE-SSTTSHHHHHHHHHHHHHST--TSEEE-EEEE-SHHHHHHHHHTT-SEEEE
T ss_pred CCCEEEccccCccHHHHHHHHHHHHHhCC--CceEE-ecccCCHHHHHHHHHcCCCEEEE
Confidence 47899999876553 35678999999887 78777 55566788888999999997543
No 254
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=68.57 E-value=52 Score=25.31 Aligned_cols=56 Identities=16% Similarity=0.416 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCCCCCcEEEEe-----CCCChhHHHHHHHhCCCceeeC--CCC-hHHHHHHHHHHhh
Q 046192 80 DLLRKIKESASLKDIPVVIMS-----SENIPSRINRCLEEGAEEFFLK--PVQ-LADVNKLKPHLMK 138 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls-----~~~~~~~~~~a~~~ga~~yl~k--P~~-~~~l~~~i~~~~~ 138 (187)
++++.+|+. . +.|+++++ .......+..+.+.|++.++.. |++ .+++.+.+..+.+
T Consensus 64 ~~v~~vr~~-~--~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~ 127 (244)
T PRK13125 64 PLLEEVRKD-V--SVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKN 127 (244)
T ss_pred HHHHHHhcc-C--CCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHH
Confidence 466667653 2 77886553 2234555778889999999886 343 3555555544443
No 255
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=68.54 E-value=42 Score=24.27 Aligned_cols=78 Identities=6% Similarity=0.076 Sum_probs=52.9
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhC--CceEEEeCC-------HHHHHHHHhccCcccccccccccccEEEEeccCCCCC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTS--SYQVTAVDS-------GNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT 77 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~--~~~v~~~~~-------~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~ 77 (187)
...+|.++...+...+.+...|++. |..++.+.+ .++.++.+ ....+|+|++-.-.|...
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I-----------~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRI-----------NASGPDIVFVGLGAPKQE 115 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHH-----------HHcCCCEEEEECCCCHHH
Confidence 3578999999999999999999765 566665433 23344455 334567999999888765
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEe
Q 046192 78 GYDLLRKIKESASLKDIPVVIMS 100 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls 100 (187)
.++...+... +.++++..
T Consensus 116 --~~~~~~~~~l---~~~v~i~v 133 (172)
T PF03808_consen 116 --RWIARHRQRL---PAGVIIGV 133 (172)
T ss_pred --HHHHHHHHHC---CCCEEEEE
Confidence 4677777665 34444443
No 256
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=68.52 E-value=36 Score=24.26 Aligned_cols=90 Identities=19% Similarity=0.179 Sum_probs=49.7
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEE--------------eCCHHHHHHHHhccCcccccccccccccEEEEecc
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTA--------------VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC 72 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~--------------~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~ 72 (187)
...|+||+..-..+.+.+.+.|+..++.+.. +-+..-....+. +|. ....||+||+|-.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~--~p~-----~~~~yd~II~DEc 104 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLL--NPC-----RLKNYDVIIMDEC 104 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHH--TSS-----CTTS-SEEEECTT
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhc--Ccc-----cccCccEEEEecc
Confidence 4689999999999999999999865433321 111222333332 243 5567999999974
Q ss_pred CC-CCCHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 046192 73 MP-GMTGYDLLRKIKESASLKDIPVVIMSSEN 103 (187)
Q Consensus 73 ~~-~~~g~~~~~~l~~~~~~~~~~iI~ls~~~ 103 (187)
-- +...+.+...++.........+|.+|+-.
T Consensus 105 H~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 105 HFTDPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp T--SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred ccCCHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 43 33333333344433322246788888753
No 257
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.45 E-value=22 Score=30.52 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=41.5
Q ss_pred ccccEEEEeccCCC-CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 62 IQVNLIITDYCMPG-MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 62 ~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
...|.|++|..... ..-.+++++||+..| +++|+ ..+-.+.+....+.++|||..
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p--~~~v~-agnv~t~~~a~~l~~aGad~v 293 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDP--GVPIV-AGNVVTAEGTRDLVEAGADIV 293 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCC--CCeEE-eeccCCHHHHHHHHHcCCCEE
Confidence 34679999986544 556779999999876 66554 346667888999999999864
No 258
>PLN02949 transferase, transferring glycosyl groups
Probab=68.40 E-value=75 Score=27.08 Aligned_cols=110 Identities=9% Similarity=0.007 Sum_probs=64.5
Q ss_pred ceEEEEEeCC-----HHHHHHHHHHHHhCCc--eEEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 8 QFHVLAVDDS-----IIDRKLIERLLKTSSY--QVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 8 ~~~ilivd~~-----~~~~~~l~~~l~~~~~--~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
..+..|+++- ......+++..++.|. .|... -+.++..+.+.. .++.+ -......-|
T Consensus 303 ~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~-------------a~~~v-~~s~~E~FG 368 (463)
T PLN02949 303 RPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGG-------------AVAGL-HSMIDEHFG 368 (463)
T ss_pred CcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHh-------------CcEEE-eCCccCCCC
Confidence 4677888763 2334567776666552 24433 234555555522 23555 345566778
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+-+++.+.. .+|+|..........+..-...|..+|+.. +.+++.+++.+++.
T Consensus 369 ivvlEAMA~-----G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~~~la~ai~~ll~ 421 (463)
T PLN02949 369 ISVVEYMAA-----GAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TVEEYADAILEVLR 421 (463)
T ss_pred hHHHHHHHc-----CCcEEEeCCCCCcceeeecCCCCcccccCC--CHHHHHHHHHHHHh
Confidence 888888764 677887654432212211112256677763 78999999998886
No 259
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=68.29 E-value=58 Score=25.82 Aligned_cols=109 Identities=15% Similarity=0.217 Sum_probs=66.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCC--ceEEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCC-----CCCH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSS--YQVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-----GMTG 78 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~--~~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-----~~~g 78 (187)
..+++++++.+.. ..+....+..| ..+... -+.++....+. ..|++++-.... ..-|
T Consensus 219 ~~~l~ivG~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~-------------~ad~~v~ps~~~~~~~~E~~~ 284 (367)
T cd05844 219 EVRLVIIGDGPLL-AALEALARALGLGGRVTFLGAQPHAEVRELMR-------------RARIFLQPSVTAPSGDAEGLP 284 (367)
T ss_pred CeEEEEEeCchHH-HHHHHHHHHcCCCCeEEECCCCCHHHHHHHHH-------------hCCEEEECcccCCCCCccCCc
Confidence 4677888876543 44666665533 233332 23455555552 245666543321 2346
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
..+++.+.. .+|||...... ..+.+..|..+++..|-+.+++.+++..++..
T Consensus 285 ~~~~EA~a~-----G~PvI~s~~~~----~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 285 VVLLEAQAS-----GVPVVATRHGG----IPEAVEDGETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred hHHHHHHHc-----CCCEEEeCCCC----chhheecCCeeEEECCCCHHHHHHHHHHHHcC
Confidence 777777764 77888543322 33445567788999999999999999988764
No 260
>PRK14099 glycogen synthase; Provisional
Probab=68.03 E-value=74 Score=27.22 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=40.1
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHH----hC-CCceeeCCCChHHHHHHHHHH
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLE----EG-AEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~----~g-a~~yl~kP~~~~~l~~~i~~~ 136 (187)
.|++++=. ....-|+..++.++. .+|.|+.....-.+.+...-. .| .++|+..|.+.++|.+++.++
T Consensus 370 aDifv~PS-~~E~fGl~~lEAma~-----G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a 441 (485)
T PRK14099 370 ADALLVPS-RFEPCGLTQLCALRY-----GAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKT 441 (485)
T ss_pred CCEEEECC-ccCCCcHHHHHHHHC-----CCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHH
Confidence 46777743 345667777777765 444444332222232221100 11 578999999999999998874
No 261
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=67.84 E-value=0.66 Score=35.74 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=21.4
Q ss_pred hhhhhhcccccccCCCCCCCccC
Q 046192 164 DRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
..++.||.++|.+.++|+|++||
T Consensus 178 ~~LT~rE~evl~~~a~G~t~~eI 200 (240)
T PRK10188 178 MNFSKREKEILKWTAEGKTSAEI 200 (240)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHH
Confidence 36999999999999999999987
No 262
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=67.80 E-value=58 Score=25.63 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=57.0
Q ss_pred EEEEeCCHHHHHHH--HHHHH----hCC-ceE-EEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 11 VLAVDDSIIDRKLI--ERLLK----TSS-YQV-TAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 11 ilivd~~~~~~~~l--~~~l~----~~~-~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
|+|-|+|..+.... .+.++ ..+ ..+ +.+.+.+++.+.+. ..+|.|.+|-..|. +--++.
T Consensus 155 vlikdnH~~~~g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~------------~gaD~I~ld~~~p~-~l~~~~ 221 (272)
T cd01573 155 ILVFAEHRAFLGGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAE------------AGADILQLDKFSPE-ELAELV 221 (272)
T ss_pred eEeehhHHHHhCCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHH------------cCCCEEEECCCCHH-HHHHHH
Confidence 77877775544332 22221 122 223 34788888887762 23669999965553 222345
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+.++...+ ++|+++... -+.+.+.+....|++.+..
T Consensus 222 ~~~~~~~~--~i~i~AsGG-I~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 222 PKLRSLAP--PVLLAAAGG-INIENAAAYAAAGADILVT 257 (272)
T ss_pred HHHhccCC--CceEEEECC-CCHHHHHHHHHcCCcEEEE
Confidence 55554333 677765554 4788899999999998743
No 263
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=67.19 E-value=58 Score=26.61 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=34.3
Q ss_pred CCcEEEEeC----CCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 93 DIPVVIMSS----ENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 93 ~~~iI~ls~----~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+.-+|.+.. ....+.+..|+++|.+=++-||+..++..+.++.+.+.
T Consensus 64 Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~ 114 (343)
T TIGR01761 64 DIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQ 114 (343)
T ss_pred CEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHc
Confidence 555555522 35678899999999999999999977776666555543
No 264
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=67.01 E-value=49 Score=24.74 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=43.1
Q ss_pred EEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee--CCCChHHHHHHHHH
Q 046192 66 LIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL--KPVQLADVNKLKPH 135 (187)
Q Consensus 66 lvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~--kP~~~~~l~~~i~~ 135 (187)
+-++|....-...++.++.+++.. ++||++-.--.+...+..+.+.||+..++ .-++.+.+.+.++.
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~v---~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREAV---SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHhc---CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 444555444445678888888753 78999765445566788999999999872 22333444444443
No 265
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=66.92 E-value=41 Score=24.20 Aligned_cols=85 Identities=13% Similarity=0.159 Sum_probs=46.7
Q ss_pred ceEEEEEeCCHHHHH-----------HHHHHHHhC---CceEEE-eC---CHHHHHHHHhccCcccccccccccccEEEE
Q 046192 8 QFHVLAVDDSIIDRK-----------LIERLLKTS---SYQVTA-VD---SGNKALEFLGLLNEDEQTNSQVIQVNLIIT 69 (187)
Q Consensus 8 ~~~ilivd~~~~~~~-----------~l~~~l~~~---~~~v~~-~~---~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~ 69 (187)
+++|++++|.-.... .+.+.|.+. ++.+.. .. +..+.++.+... ...+||+|++
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~~--------~~~~pd~Vii 73 (191)
T cd01836 2 PLRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAPL--------PETRFDVAVI 73 (191)
T ss_pred CeEEEEEeccccccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHhc--------ccCCCCEEEE
Confidence 467777777665442 255555442 344433 22 334445554321 3346889999
Q ss_pred eccCCCC-----------CHHHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 70 DYCMPGM-----------TGYDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 70 d~~~~~~-----------~g~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
-+-..+. +-.++++.+++..+ +.+|++++..
T Consensus 74 ~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~--~~~iiv~~~p 115 (191)
T cd01836 74 SIGVNDVTHLTSIARWRKQLAELVDALRAKFP--GARVVVTAVP 115 (191)
T ss_pred EecccCcCCCCCHHHHHHHHHHHHHHHHhhCC--CCEEEEECCC
Confidence 5543331 12246677777655 7888887653
No 266
>PRK09776 putative diguanylate cyclase; Provisional
Probab=66.68 E-value=49 Score=30.99 Aligned_cols=99 Identities=12% Similarity=0.163 Sum_probs=63.2
Q ss_pred HHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-----CCHHHHHHHHHhhcCCCCCc
Q 046192 23 LIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-----MTGYDLLRKIKESASLKDIP 95 (187)
Q Consensus 23 ~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-----~~g~~~~~~l~~~~~~~~~~ 95 (187)
..-+.|++.|+.+.. +.++...+..+.. -++|.|=+|...-. ...-.+++.+......-++.
T Consensus 978 ~~~~~l~~~G~~~~lddfg~g~~~~~~l~~-----------~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 1046 (1092)
T PRK09776 978 RLVQKLRLAGCRVVLSDFGRGLSSFNYLKA-----------FMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMK 1046 (1092)
T ss_pred HHHHHHHHCCcEEEEcCCCCCchHHHHHHh-----------CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCc
Confidence 344556778988876 6777778888844 35669999964421 22344566554433212444
Q ss_pred EEEEeCCCChhHHHHHHHhCCC---c-eeeCCCChHHHHHHH
Q 046192 96 VVIMSSENIPSRINRCLEEGAE---E-FFLKPVQLADVNKLK 133 (187)
Q Consensus 96 iI~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~~~l~~~i 133 (187)
+| ...-.+.+....+.+.|++ + |+.||...+++....
T Consensus 1047 ~i-aegVEt~~~~~~l~~~g~~~~QG~~~~~P~~~~~~~~~~ 1087 (1092)
T PRK09776 1047 TI-AGPVELPLVLDTLSGIGVDLAYGYAIARPQPLDLLLNSS 1087 (1092)
T ss_pred EE-ecccCCHHHHHHHHHcCCCEEeccccCCCCcHHHHHhhh
Confidence 44 4445677778888899985 3 589999888776543
No 267
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=66.26 E-value=49 Score=24.19 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=54.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeC-------CHHHHHHHHhccCcccccccccccccEEEEeccCC--CCCHHHH
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVD-------SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP--GMTGYDL 81 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~-------~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~--~~~g~~~ 81 (187)
||+=|-|...+..++..-+..|-+|...+ ++++.++.+.....| |=+|++|-.-. ...|-+.
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~D---------PV~VMfDD~G~~g~G~GE~A 73 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHD---------PVLVMFDDKGFIGEGPGEQA 73 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCC---------CEEEEEeCCCCCCCCccHHH
Confidence 45666777777888888788888888743 788999999665444 55777776433 2456677
Q ss_pred HHHHHhhcCCCCCcEEEEeCCC
Q 046192 82 LRKIKESASLKDIPVVIMSSEN 103 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~ls~~~ 103 (187)
++.+-.+....-+-+|.+++..
T Consensus 74 l~~v~~h~~IeVLG~iAVASnT 95 (180)
T PF14097_consen 74 LEYVANHPDIEVLGAIAVASNT 95 (180)
T ss_pred HHHHHcCCCceEEEEEEEEecC
Confidence 7777665422233455555543
No 268
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=65.91 E-value=50 Score=24.18 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCCceEE----EeCCHHHHHHHHhccCcccccccccccccEEEEecc----CC-CCCHHHHHHHHHhhcCC
Q 046192 21 RKLIERLLKTSSYQVT----AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC----MP-GMTGYDLLRKIKESASL 91 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~----~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~----~~-~~~g~~~~~~l~~~~~~ 91 (187)
...+.+..+..|..+. .+.+..+..+.+ ....|.+.+... .. ...+.+.++.+++. +
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~------------~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~- 157 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLL------------KLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-L- 157 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH------------HCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-c-
Confidence 3445555566665443 345667776633 224567777421 11 23456777777764 2
Q ss_pred CCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 92 KDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 92 ~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
++|+++...- +.+.+.++++.||+.++.
T Consensus 158 -~~~i~~~GGI-~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 158 -GVKVAVAGGI-TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred -CCCEEEECCc-CHHHHHHHHhcCCCEEEE
Confidence 7888877665 588899999999998754
No 269
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.90 E-value=43 Score=26.68 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
.+.++.+|+..+ ....|.+.. .+.+.+.+|.+.|+|...+-+++++++.++++.+
T Consensus 183 ~~av~~~r~~~~--~~~~I~VEv-~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 183 GEAITRIRQRIP--YPLTIEVET-ETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred HHHHHHHHHhCC--CCCEEEEEC-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 356667777654 223344443 4788899999999998889999999999988765
No 270
>PRK00955 hypothetical protein; Provisional
Probab=65.75 E-value=85 Score=27.97 Aligned_cols=109 Identities=20% Similarity=0.308 Sum_probs=64.0
Q ss_pred eCCHHHHHHHHHHHHhCCceEEEeCCH----HHHHHHHhccCcccccccccccccEEEE------e--------------
Q 046192 15 DDSIIDRKLIERLLKTSSYQVTAVDSG----NKALEFLGLLNEDEQTNSQVIQVNLIIT------D-------------- 70 (187)
Q Consensus 15 d~~~~~~~~l~~~l~~~~~~v~~~~~~----~~a~~~l~~~~~~~~~~~~~~~~dlvi~------d-------------- 70 (187)
|-.+.-...+.++|+..||.|...... .+.+..+ .+ |.++.. |
T Consensus 26 dhp~fg~a~i~r~L~~~G~~v~ii~qp~~~~~~~~~~~--g~-----------P~l~~~vs~g~~dsmv~~yt~~~~~r~ 92 (620)
T PRK00955 26 DHPSFGTAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKL--GK-----------PRLFFLVSAGNMDSMVNHYTASKKLRS 92 (620)
T ss_pred cCCccHHHHHHHHHHHCCCEEEEecCCCcCChHHHHhh--CC-----------CcEEEEeccccHHHHHhhcchhhhccc
Confidence 444455688899999999999875432 2222222 23 446654 1
Q ss_pred --ccCCC--------CCHHHHHHHHHhhcCCCCCcEEEEeCCCCh------hHHHH------HHHhCCCceeeCCCChHH
Q 046192 71 --YCMPG--------MTGYDLLRKIKESASLKDIPVVIMSSENIP------SRINR------CLEEGAEEFFLKPVQLAD 128 (187)
Q Consensus 71 --~~~~~--------~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~------~~~~~------a~~~ga~~yl~kP~~~~~ 128 (187)
.-.|+ -..+..++.+++..| ++|||+=....+. +++.. ....+| ||++.---...
T Consensus 93 ~d~ytpgg~~~~rpdra~i~y~~~ik~~~p--~~~IvlGG~eaS~rr~~hyd~w~~~~~~siL~d~~a-D~vv~GeGE~t 169 (620)
T PRK00955 93 KDAYSPGGKMGLRPDRATIVYCNKIKEAYP--DVPIIIGGIEASLRRFAHYDYWSDKVRRSILIDSGA-DLLVYGMGEKP 169 (620)
T ss_pred ccccCCCCccCCCcchHHHHHHHHHHHHCC--CCcEEeCChhhhccccccchhhhhhhhHHHhhccCC-CEEEECCcHHH
Confidence 11122 123445788888876 8888764433222 22222 334555 78888777777
Q ss_pred HHHHHHHHhhh
Q 046192 129 VNKLKPHLMKG 139 (187)
Q Consensus 129 l~~~i~~~~~~ 139 (187)
+.+.++.+..+
T Consensus 170 ~~eL~~~L~~g 180 (620)
T PRK00955 170 IVEIARRLKAG 180 (620)
T ss_pred HHHHHHHHHcC
Confidence 88888877655
No 271
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=65.62 E-value=73 Score=25.96 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=56.4
Q ss_pred HHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEecc-CCCCCH--------HHHHHHHHhhcCCCC
Q 046192 24 IERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC-MPGMTG--------YDLLRKIKESASLKD 93 (187)
Q Consensus 24 l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~-~~~~~g--------~~~~~~l~~~~~~~~ 93 (187)
....+...|..+. .+.+..++.... +...|.+|..-. -.+..| +.++.++++... .
T Consensus 119 ~i~~~~~~g~~v~~~v~~~~~A~~~~------------~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~--~ 184 (336)
T COG2070 119 FVARLKAAGIKVIHSVITVREALKAE------------RAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVD--G 184 (336)
T ss_pred HHHHHHHcCCeEEEEeCCHHHHHHHH------------hCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhc--C
Confidence 3344444564444 467777776654 234667777665 333334 678888888763 2
Q ss_pred CcEEEEeCCCChhHHHHHHHhCCCc
Q 046192 94 IPVVIMSSENIPSRINRCLEEGAEE 118 (187)
Q Consensus 94 ~~iI~ls~~~~~~~~~~a~~~ga~~ 118 (187)
+|||.-..-.+...+..|+..||++
T Consensus 185 iPViAAGGI~dg~~i~AAlalGA~g 209 (336)
T COG2070 185 IPVIAAGGIADGRGIAAALALGADG 209 (336)
T ss_pred CCEEEecCccChHHHHHHHHhccHH
Confidence 8999999999999999999999986
No 272
>PLN02591 tryptophan synthase
Probab=65.58 E-value=62 Score=25.16 Aligned_cols=99 Identities=13% Similarity=0.205 Sum_probs=62.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEE-e-CCH-HHHHHHHhccCcccccccccccccEE-EEec-cCCC------CCHH
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTA-V-DSG-NKALEFLGLLNEDEQTNSQVIQVNLI-ITDY-CMPG------MTGY 79 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~-~-~~~-~~a~~~l~~~~~~~~~~~~~~~~dlv-i~d~-~~~~------~~g~ 79 (187)
++|.|=...-...+...+++.|+..+. + ++. ++-+..+....++ .| ++.. -..+ .+..
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~g-----------FIY~Vs~~GvTG~~~~~~~~~~ 178 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEG-----------FVYLVSSTGVTGARASVSGRVE 178 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCC-----------cEEEeeCCCCcCCCcCCchhHH
Confidence 566666666667777788888865554 3 333 4455666444433 33 2221 1111 1234
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
++++.+|+. . ++|+++=..-.+.+.+.++...|||+.+.-.
T Consensus 179 ~~i~~vk~~-~--~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 179 SLLQELKEV-T--DKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHhc-C--CCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 567888874 3 8899876666778999999999999998864
No 273
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=65.32 E-value=66 Score=25.33 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=53.3
Q ss_pred eEEEEEeCCHH---HHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 9 FHVLAVDDSII---DRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 9 ~~ilivd~~~~---~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
.++.+++-|+. ....+....+..++.+..+.+..+..+.+...+ ....+|+||+|.--......+.++.+
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~-------~~~~~D~ViIDt~Gr~~~~~~~l~el 176 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK-------EEARVDYILIDTAGKNYRASETVEEM 176 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH-------hcCCCCEEEEECCCCCcCCHHHHHHH
Confidence 46777776654 334445555556777777666655544443221 12357899999854332222333333
Q ss_pred Hh----hcCCCCCcEEEEeCCCChhHHHHHH----HhCCCcee-eC
Q 046192 86 KE----SASLKDIPVVIMSSENIPSRINRCL----EEGAEEFF-LK 122 (187)
Q Consensus 86 ~~----~~~~~~~~iI~ls~~~~~~~~~~a~----~~ga~~yl-~k 122 (187)
++ ..| +..++++++........... ..+.++.+ +|
T Consensus 177 ~~~~~~~~~--~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TK 220 (270)
T PRK06731 177 IETMGQVEP--DYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 220 (270)
T ss_pred HHHHhhhCC--CeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEe
Confidence 32 222 33466666554443332222 23556654 44
No 274
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=65.20 E-value=25 Score=30.26 Aligned_cols=55 Identities=13% Similarity=0.308 Sum_probs=40.7
Q ss_pred cccEEEEeccCCCC-CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 63 QVNLIITDYCMPGM-TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 63 ~~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
..|+|.+|..-... ..++.+++|++..| +++|++ ..-.+.+.+..+.++||+...
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~--~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYP--HVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCC--CceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 47799999853322 34688999998765 666654 455678889999999999763
No 275
>PRK13561 putative diguanylate cyclase; Provisional
Probab=65.15 E-value=50 Score=29.13 Aligned_cols=102 Identities=14% Similarity=0.196 Sum_probs=61.7
Q ss_pred HHHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHHHHHhhcCCCCCcEE
Q 046192 22 KLIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~~~~~~~~~~iI 97 (187)
...-..|++.|+.+.. +.++-..+..+... ..-++|.|=+|-..-. .+.-.+++.+-.....-++.+|
T Consensus 537 ~~~~~~l~~~G~~i~lddfG~g~ssl~~L~~l--------~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~vi 608 (651)
T PRK13561 537 VAILRPLRNAGVRVALDDFGMGYAGLRQLQHM--------KSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVI 608 (651)
T ss_pred HHHHHHHHHCCCEEEEECCCCCcccHHHHhhc--------CCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEE
Confidence 3445566778987776 66666666666321 1135778888853211 1122455555444331244444
Q ss_pred EEeCCCChhHHHHHHHhCCC---c-eeeCCCChHHHHHH
Q 046192 98 IMSSENIPSRINRCLEEGAE---E-FFLKPVQLADVNKL 132 (187)
Q Consensus 98 ~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~~~l~~~ 132 (187)
...-.+.+....+.+.|++ + |+.||...+++.+.
T Consensus 609 -AegVE~~~~~~~l~~~g~d~~QG~~~~~P~~~~~~~~~ 646 (651)
T PRK13561 609 -AEGVETEAQRDWLLKAGVGIAQGFLFARALPIEIFEER 646 (651)
T ss_pred -EecCCCHHHHHHHHhcCCCEEeCCcccCCCCHHHHHHH
Confidence 4455678888888899986 3 58999999887543
No 276
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=65.06 E-value=57 Score=24.56 Aligned_cols=53 Identities=17% Similarity=0.350 Sum_probs=40.4
Q ss_pred EEEEeccCCCC-CH--HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 66 LIITDYCMPGM-TG--YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 66 lvi~d~~~~~~-~g--~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+++.|..-.+. .| +++++.+++.. +.|+++-..-.+.+.+.+++..|+++.+.
T Consensus 162 ii~~~~~~~g~~~g~~~~~i~~i~~~~---~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 162 IIYTDISRDGTLSGPNFELTKELVKAV---NVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred EEEEeecCCCCcCCCCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 77777755432 22 57788887753 78999888888999999999999998765
No 277
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=65.05 E-value=40 Score=26.99 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
.+.++.+++..| ..+|.+=.. +.+.+.++.++|+|-..+-.++++++.++++.+
T Consensus 196 ~~av~~~r~~~~--~~kIeVEv~--sleea~ea~~~gaDiI~LDn~s~e~~~~av~~~ 249 (296)
T PRK09016 196 RQAVEKAFWLHP--DVPVEVEVE--NLDELDQALKAGADIIMLDNFTTEQMREAVKRT 249 (296)
T ss_pred HHHHHHHHHhCC--CCCEEEEeC--CHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Confidence 356777777665 567655444 589999999999999999999999999998854
No 278
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.99 E-value=72 Score=25.65 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=61.1
Q ss_pred eEEEEEeCC--HH---HHHHHHHHHHhCCceEEEeCCHHHHHHH-Hhcc---------CcccccccccccccEEEEeccC
Q 046192 9 FHVLAVDDS--II---DRKLIERLLKTSSYQVTAVDSGNKALEF-LGLL---------NEDEQTNSQVIQVNLIITDYCM 73 (187)
Q Consensus 9 ~~ilivd~~--~~---~~~~l~~~l~~~~~~v~~~~~~~~a~~~-l~~~---------~~~~~~~~~~~~~dlvi~d~~~ 73 (187)
.+|.|+-.. +. ....+...|...|+.+.........+.. .... .+. ......+|++++
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~vi~---- 78 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDAD---PDAADGCELVLV---- 78 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccch---hhcccCCCEEEE----
Confidence 357777432 22 3456666677778887765433222110 0000 000 001123566665
Q ss_pred CCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 74 PGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 74 ~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
-|+|| .+++..+.... .++||+-+.. |=.+|+.- ++++++...++++.++.
T Consensus 79 lGGDG-T~L~aar~~~~-~~~PilGIN~-------------G~lGFL~~-~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 79 LGGDG-TILRAAELARA-ADVPVLGVNL-------------GHVGFLAE-AEAEDLDEAVERVVDRD 129 (306)
T ss_pred EcCCH-HHHHHHHHhcc-CCCcEEEEec-------------CCCceecc-CCHHHHHHHHHHHHcCC
Confidence 25777 45566555433 3789886654 44578874 67899999999999874
No 279
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.86 E-value=23 Score=28.26 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=49.0
Q ss_pred ccEEEEeccC-CCCCH-HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 64 VNLIITDYCM-PGMTG-YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 64 ~dlvi~d~~~-~~~~g-~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
.|.|++--+. .-..| -+.++.+++..+ ..+|. ....+.+.+.+|+++|||-.++-.++++++.+++..+
T Consensus 176 sD~vLIkdNHi~~~G~i~~av~~~r~~~~--~~kIe--VEvetleea~eA~~aGaDiImLDnmspe~l~~av~~~ 246 (294)
T PRK06978 176 YDGILIKENHIAAAGGVGAALDAAFALNA--GVPVQ--IEVETLAQLETALAHGAQSVLLDNFTLDMMREAVRVT 246 (294)
T ss_pred CceEEEeHHHHHHhCCHHHHHHHHHHhCC--CCcEE--EEcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 4555554433 22223 357888887654 45543 3345699999999999999999999999999988755
No 280
>PLN02316 synthase/transferase
Probab=64.75 E-value=1.3e+02 Score=28.61 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=46.7
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHH---------HhCCCceeeCCCChHHHHHHHH
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCL---------EEGAEEFFLKPVQLADVNKLKP 134 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~---------~~ga~~yl~kP~~~~~l~~~i~ 134 (187)
.|++++=- .....|+..++.++. .+|+|+-....-.+.+...- ..+.++|+..|.+++.|..++.
T Consensus 920 ADiflmPS-~~EP~GLvqLEAMa~-----GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~ 993 (1036)
T PLN02316 920 ADFILVPS-IFEPCGLTQLTAMRY-----GSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALN 993 (1036)
T ss_pred CcEEEeCC-cccCccHHHHHHHHc-----CCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHH
Confidence 56777653 455678888888775 55566544444444443210 1147899999999999999988
Q ss_pred HHhhh
Q 046192 135 HLMKG 139 (187)
Q Consensus 135 ~~~~~ 139 (187)
+++..
T Consensus 994 raL~~ 998 (1036)
T PLN02316 994 RAISA 998 (1036)
T ss_pred HHHhh
Confidence 88764
No 281
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.74 E-value=42 Score=26.74 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=49.4
Q ss_pred ccEEEEeccCCC-C-CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 64 VNLIITDYCMPG-M-TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 64 ~dlvi~d~~~~~-~-~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
.|.|++.-+.-. . +-.+.++..|+..| ..+|.+-.. +.+.+.+|++.|+|-..+-.++++++..++..+
T Consensus 170 sd~ilIkdNHi~~~G~i~~ai~~~r~~~~--~~kIeVEv~--tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~~ 240 (289)
T PRK07896 170 GDAALIKDNHVAAAGSVVAALRAVRAAAP--DLPCEVEVD--SLEQLDEVLAEGAELVLLDNFPVWQTQEAVQRR 240 (289)
T ss_pred cceeeecHHHHHHhCcHHHHHHHHHHhCC--CCCEEEEcC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 455555443211 1 33467778887765 577666554 577999999999999999999999999998754
No 282
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=64.62 E-value=47 Score=26.42 Aligned_cols=94 Identities=11% Similarity=0.104 Sum_probs=55.8
Q ss_pred EEEEEeCCHHHHH---HHHHHH----HhCC-ceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHH
Q 046192 10 HVLAVDDSIIDRK---LIERLL----KTSS-YQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYD 80 (187)
Q Consensus 10 ~ilivd~~~~~~~---~l~~~l----~~~~-~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~ 80 (187)
.|||-|+|-.+.. .+...+ +..+ ..+. .+.+.+++.+.+.. .+|+|++|-..| .+--+
T Consensus 159 ~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a------------gaDiI~LDn~~~-e~l~~ 225 (284)
T PRK06096 159 TILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA------------QPDVLQLDKFSP-QQATE 225 (284)
T ss_pred hhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc------------CCCEEEECCCCH-HHHHH
Confidence 3566666654443 233333 2222 2343 47899999998842 367999984332 23333
Q ss_pred HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 81 LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
..+.+++..+ + ..+-.+..-+.+.+.+....|+|-+
T Consensus 226 av~~~~~~~~--~-~~leaSGGI~~~ni~~yA~tGvD~I 261 (284)
T PRK06096 226 IAQIAPSLAP--H-CTLSLAGGINLNTLKNYADCGIRLF 261 (284)
T ss_pred HHHHhhccCC--C-eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4444443322 2 3566777888888988888998754
No 283
>PRK14974 cell division protein FtsY; Provisional
Probab=64.61 E-value=77 Score=25.85 Aligned_cols=102 Identities=15% Similarity=0.204 Sum_probs=50.6
Q ss_pred ceEEEEEeCCH---HHHHHHHHHHHhCCceEEEeCCHH-------HHHHHHhccCcccccccccccccEEEEeccCCCCC
Q 046192 8 QFHVLAVDDSI---IDRKLIERLLKTSSYQVTAVDSGN-------KALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT 77 (187)
Q Consensus 8 ~~~ilivd~~~---~~~~~l~~~l~~~~~~v~~~~~~~-------~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~ 77 (187)
..+|++++.|. ...+.+.......|..+.....+. ++++.. ....+|+||+|..--...
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~-----------~~~~~DvVLIDTaGr~~~ 236 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA-----------KARGIDVVLIDTAGRMHT 236 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH-----------HhCCCCEEEEECCCccCC
Confidence 35777787774 333445555555665554432221 222232 223478999998532222
Q ss_pred HHHHHHHHHh----hcCCCCCcEEEEeCCCChhHH--HHHH--HhCCCceeeC
Q 046192 78 GYDLLRKIKE----SASLKDIPVVIMSSENIPSRI--NRCL--EEGAEEFFLK 122 (187)
Q Consensus 78 g~~~~~~l~~----~~~~~~~~iI~ls~~~~~~~~--~~a~--~~ga~~yl~k 122 (187)
-.+++..|+. ..| +..++++++....+.. ...| ..|.++.+.-
T Consensus 237 ~~~lm~eL~~i~~~~~p--d~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlT 287 (336)
T PRK14974 237 DANLMDELKKIVRVTKP--DLVIFVGDALAGNDAVEQAREFNEAVGIDGVILT 287 (336)
T ss_pred cHHHHHHHHHHHHhhCC--ceEEEeeccccchhHHHHHHHHHhcCCCCEEEEe
Confidence 3344444433 233 5556666554433333 2333 2577777543
No 284
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=64.16 E-value=31 Score=29.02 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=40.9
Q ss_pred cccccEEEEeccCCC-CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCc
Q 046192 61 VIQVNLIITDYCMPG-MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEE 118 (187)
Q Consensus 61 ~~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~ 118 (187)
....|+|++|..-.+ .--+++++++++..| ++.|| -.+....+.+...+.+|||+
T Consensus 261 ~aGvdvviLDSSqGnS~~qiemik~iK~~yP--~l~Vi-aGNVVT~~qa~nLI~aGaDg 316 (503)
T KOG2550|consen 261 QAGVDVVILDSSQGNSIYQLEMIKYIKETYP--DLQII-AGNVVTKEQAANLIAAGADG 316 (503)
T ss_pred hcCCcEEEEecCCCcchhHHHHHHHHHhhCC--Cceee-ccceeeHHHHHHHHHccCce
Confidence 345789999987654 346789999999987 77776 33334566777888999986
No 285
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=64.09 E-value=25 Score=25.96 Aligned_cols=29 Identities=17% Similarity=0.048 Sum_probs=25.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
||+||..-.+-..+.+.|.+.|+.+..+.
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~ 30 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVR 30 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEE
Confidence 79999999999999999999998777654
No 286
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.00 E-value=71 Score=25.23 Aligned_cols=107 Identities=22% Similarity=0.228 Sum_probs=57.9
Q ss_pred EEEEEeCC--H---HHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 10 HVLAVDDS--I---IDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 10 ~ilivd~~--~---~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
||.|+-.. + .....+...|+..|+++.......+....... +.. .......+|++++= |+|| .+++.
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~--~~~-~~~~~~~~d~vi~i----GGDG-TlL~a 73 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSE--EDV-LPLEEMDVDFIIAI----GGDG-TILRI 73 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccc--ccc-ccccccCCCEEEEE----eCcH-HHHHH
Confidence 56666322 2 23455666666778887765332221110000 000 00011246666653 5677 45566
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
++ ... .++||+.+... -.+|+. .++++++...+..+.++.
T Consensus 74 ~~-~~~-~~~pi~gIn~G-------------~lGFl~-~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 74 EH-KTK-KDIPILGINMG-------------TLGFLT-EVEPEETFFALSRLLEGD 113 (277)
T ss_pred HH-hcC-CCCeEEEEeCC-------------CCCccc-cCCHHHHHHHHHHHHcCC
Confidence 66 332 37898887753 235555 677889999999998873
No 287
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=63.30 E-value=44 Score=24.52 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=5.0
Q ss_pred HHHHHHHHHhh
Q 046192 78 GYDLLRKIKES 88 (187)
Q Consensus 78 g~~~~~~l~~~ 88 (187)
|.+.++.+++.
T Consensus 40 g~~~i~~i~~~ 50 (202)
T cd04726 40 GMEAVRALREA 50 (202)
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 288
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=63.28 E-value=72 Score=25.10 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=54.5
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHH-HHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYD-LLRK 84 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~-~~~~ 84 (187)
....+++|-+...=....+.+.|.+.|+.++.+.-..+-+..+...-- ......+-++.+++.+.+..+ +...
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~------~~~~v~v~vi~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELE------DKTGVEVEVIPADLSDPEALERLEDE 77 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHH------HhhCceEEEEECcCCChhHHHHHHHH
Confidence 345688999999999999999999999999876655554444432111 122334555555556656555 4556
Q ss_pred HHhhcCCCCCcEEEEe
Q 046192 85 IKESASLKDIPVVIMS 100 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls 100 (187)
++.... .+-+++-.
T Consensus 78 l~~~~~--~IdvLVNN 91 (265)
T COG0300 78 LKERGG--PIDVLVNN 91 (265)
T ss_pred HHhcCC--cccEEEEC
Confidence 666533 45555443
No 289
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=62.92 E-value=56 Score=26.32 Aligned_cols=63 Identities=24% Similarity=0.228 Sum_probs=45.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCc---eEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 10 HVLAVDDSIIDRKLIERLLKT--SSY---QVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~--~~~---~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
.|+++|-+..+.+.=..++.+ .|| +|.. ..+|...++.+ ..+++|+||+|..-|-+.+..+..
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~-----------~~~~~dVii~dssdpvgpa~~lf~ 215 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL-----------KENPFDVIITDSSDPVGPACALFQ 215 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh-----------ccCCceEEEEecCCccchHHHHHH
Confidence 467888888777777777754 243 3432 45888887777 566899999999999888776443
No 290
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=62.85 E-value=59 Score=24.82 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=38.1
Q ss_pred cccEEEEeccCCCCCHHHHH-------HHHHhhcCCCCC-cEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 63 QVNLIITDYCMPGMTGYDLL-------RKIKESASLKDI-PVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~-------~~l~~~~~~~~~-~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
..|.|++=..-||..|-.++ +.+++..+.... ..|-+...-+.+.+..+..+||+-++
T Consensus 132 ~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V 197 (223)
T PRK08745 132 ELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFV 197 (223)
T ss_pred hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEE
Confidence 46788888888886665443 344443221122 34567777788999999999999554
No 291
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=62.73 E-value=29 Score=23.83 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhhcCCCCCcEEE--EeCCCChhHHHHHHHhCCCceeeC
Q 046192 76 MTGYDLLRKIKESASLKDIPVVI--MSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 76 ~~g~~~~~~l~~~~~~~~~~iI~--ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
-.+.++....+...| +++.+|- .++.-++..+..||+.|||+.+.-
T Consensus 12 y~aad~ag~~~~~~p-~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~ 59 (124)
T PF02662_consen 12 YAAADLAGVSRLQYP-PNVRIIRVPCSGRVDPEFILRAFEKGADGVLVA 59 (124)
T ss_pred HHHHHHHhhccCCCC-CCeEEEEccCCCccCHHHHHHHHHcCCCEEEEe
Confidence 344555555555554 3455544 467789999999999999999873
No 292
>PRK06172 short chain dehydrogenase; Provisional
Probab=62.70 E-value=64 Score=24.29 Aligned_cols=34 Identities=12% Similarity=-0.057 Sum_probs=27.9
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
....+++|.+...-....+...|.+.|+.|..+.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~ 38 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVAD 38 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 3456899999999999999999988888887653
No 293
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.48 E-value=79 Score=25.31 Aligned_cols=106 Identities=21% Similarity=0.251 Sum_probs=54.3
Q ss_pred eEEEEEeC--CHH---HHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 9 FHVLAVDD--SII---DRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 9 ~~ilivd~--~~~---~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
.+|+++-. .+. ....+.+.|++.|+++.......+... ......+ ....+|++++= |+|| .+++
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~-~~~~~~~-----~~~~~d~vi~~----GGDG-T~l~ 72 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNP-YPVFLAS-----ASELIDLAIVL----GGDG-TVLA 72 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhcc-ccchhhc-----cccCcCEEEEE----CCcH-HHHH
Confidence 35666533 222 334556667777888776443222111 0000000 12246777763 5666 4555
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCC-hHHHHHHHHHHhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ-LADVNKLKPHLMKG 139 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~-~~~l~~~i~~~~~~ 139 (187)
.++.... .+.|++.+.. .|-.+|+.-... ..+ ...++++..+
T Consensus 73 ~~~~~~~-~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~g 115 (305)
T PRK02645 73 AARHLAP-HDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQED 115 (305)
T ss_pred HHHHhcc-CCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHcC
Confidence 5554332 3788887765 134467775421 333 5677777776
No 294
>PRK08005 epimerase; Validated
Probab=62.28 E-value=31 Score=26.10 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=39.1
Q ss_pred cccEEEEeccCCCCCHHHHHH----HHH---hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMTGYDLLR----KIK---ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~----~l~---~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..|.|++=..-||..|-.+.. +++ +..+ ... |-+-..-+.+.+..+.++||+.++.
T Consensus 128 ~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~--~~~-I~VDGGI~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 128 QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFP--AAE-CWADGGITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcc--cCC-EEEECCCCHHHHHHHHHCCCCEEEE
Confidence 467888888889877665443 444 4332 222 6677777889999999999996654
No 295
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=62.00 E-value=21 Score=27.98 Aligned_cols=54 Identities=20% Similarity=0.453 Sum_probs=37.7
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeCC------CChhHHHHHHHhCCCceeeCCCChHHHHHH
Q 046192 77 TGYDLLRKIKESASLKDIPVVIMSSE------NIPSRINRCLEEGAEEFFLKPVQLADVNKL 132 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~ls~~------~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~ 132 (187)
+.+++++.+|+..+ ++|+++++=. .-.....++-++|+++.|.-.+..++-...
T Consensus 73 ~~~~~~~~ir~~~~--~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~ 132 (259)
T PF00290_consen 73 KIFELVKEIRKKEP--DIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEEL 132 (259)
T ss_dssp HHHHHHHHHHHHCT--SSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHH
T ss_pred HHHHHHHHHhccCC--CCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHH
Confidence 35677888885555 8999998853 334567788899999999986655554333
No 296
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=61.99 E-value=60 Score=23.76 Aligned_cols=70 Identities=7% Similarity=0.042 Sum_probs=46.9
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhC--CceEEEeC---CH---HHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTS--SYQVTAVD---SG---NKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~--~~~v~~~~---~~---~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
...+|.++...+.+.+.+.+.|++. |..+.... +. ++.++.+ ....+|+|++-.-.|...-
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I-----------~~s~~dil~VglG~PkQE~ 115 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKI-----------ARSGAGIVFVGLGCPKQEI 115 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHH-----------HHcCCCEEEEEcCCcHhHH
Confidence 3478999999999999999999764 45555431 11 2234555 3345679999999988763
Q ss_pred HHHHHHHHhhc
Q 046192 79 YDLLRKIKESA 89 (187)
Q Consensus 79 ~~~~~~l~~~~ 89 (187)
++...+...
T Consensus 116 --~~~~~~~~~ 124 (177)
T TIGR00696 116 --WMRNHRHLK 124 (177)
T ss_pred --HHHHhHHhC
Confidence 455555543
No 297
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=61.98 E-value=89 Score=26.17 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC----CCHHHHHHHHHhhcCCC
Q 046192 17 SIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG----MTGYDLLRKIKESASLK 92 (187)
Q Consensus 17 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~----~~g~~~~~~l~~~~~~~ 92 (187)
+....+.+...|...||.++.. ...+|+|+++...-- ....+.++.+++.++
T Consensus 12 N~~ds~~~~~~l~~~g~~~~~~----------------------~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~-- 67 (429)
T TIGR00089 12 NEADSEIMAGLLKEAGYEVTDD----------------------PEEADVIIINTCAVREKAEQKVRSRLGELAKLKK-- 67 (429)
T ss_pred cHHHHHHHHHHHHHCcCEECCC----------------------cccCCEEEEecceeechHHHHHHHHHHHHHHhCc--
Confidence 3445567777787778765421 123679999843322 245677777777654
Q ss_pred CC-cEEEEeCCCChhHHHHHH-Hh-CCCceeeCCCChHHHHHHHHHHh
Q 046192 93 DI-PVVIMSSENIPSRINRCL-EE-GAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 93 ~~-~iI~ls~~~~~~~~~~a~-~~-ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.. +||+-...... .-.+++ .. +++ ++.-+-....+.+.+....
T Consensus 68 ~~~~vvvgGc~a~~-~~ee~~~~~~~vd-~vvg~~~~~~~~~~l~~~~ 113 (429)
T TIGR00089 68 KNAKIVVAGCLAQR-EGEELLKRIPEVD-IVLGPQNKERIPEAIESAE 113 (429)
T ss_pred CCCEEEEECccccc-CHHHHHhhCCCCC-EEECCCCHHHHHHHHHHHh
Confidence 33 44443333222 222222 23 454 5666666666766666554
No 298
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=61.87 E-value=65 Score=24.07 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=51.7
Q ss_pred HhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHHHHHhhcCCCCCcEEEEeCCCCh
Q 046192 29 KTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIKESASLKDIPVVIMSSENIP 105 (187)
Q Consensus 29 ~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~ 105 (187)
...|..+.. +.+.+++.+... ..+|.+.+.-.-.. ..+++.++.+++..+ .+.|++....-.+.
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~------------~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia~gGI~s~ 184 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALA------------LGAKIIGINNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTP 184 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHH------------cCCCEEEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEEEcCCCCH
Confidence 445765543 566666544442 23556665521111 234577788877542 26799988888888
Q ss_pred hHHHHHHHhCCCceee
Q 046192 106 SRINRCLEEGAEEFFL 121 (187)
Q Consensus 106 ~~~~~a~~~ga~~yl~ 121 (187)
+.+.++...|+++.+.
T Consensus 185 edi~~~~~~Ga~gviv 200 (217)
T cd00331 185 EDVKRLAEAGADAVLI 200 (217)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999998764
No 299
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.86 E-value=1.3e+02 Score=27.59 Aligned_cols=102 Identities=7% Similarity=0.024 Sum_probs=56.3
Q ss_pred eEEEEEeCCHHH---HHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccC--C-CCCHHHHH
Q 046192 9 FHVLAVDDSIID---RKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM--P-GMTGYDLL 82 (187)
Q Consensus 9 ~~ilivd~~~~~---~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~--~-~~~g~~~~ 82 (187)
.+|.++.-|... .+.+..+-+..|..+..+.+..+..+.+... ..+|+||+|.-- + +..-.+.+
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~----------~~~D~VLIDTAGRs~~d~~l~eel 285 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL----------GDKHLVLIDTVGMSQRDRNVSEQI 285 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh----------cCCCEEEEeCCCCCccCHHHHHHH
Confidence 477787777643 2445555555676666667777776666432 246899999843 1 11223333
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhH---HHHHHHh----CCCceee
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSR---INRCLEE----GAEEFFL 121 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~---~~~a~~~----ga~~yl~ 121 (187)
..+..... +.-.++++++....+. +...|+. +.+++|.
T Consensus 286 ~~l~~~~~-p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIl 330 (767)
T PRK14723 286 AMLCGVGR-PVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCII 330 (767)
T ss_pred HHHhccCC-CCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEE
Confidence 34333222 2445676766544433 3355553 5666643
No 300
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.59 E-value=62 Score=23.81 Aligned_cols=66 Identities=9% Similarity=0.177 Sum_probs=0.0
Q ss_pred eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCC
Q 046192 38 VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAE 117 (187)
Q Consensus 38 ~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~ 117 (187)
+.+..++.+.. ...+|.+-+ +..+..-|.+.++.++...+ ++|++.+..- +.+.+...++.|++
T Consensus 112 ~~t~~e~~~A~------------~~Gadyv~~-Fpt~~~~G~~~l~~~~~~~~--~ipvvaiGGI-~~~n~~~~l~aGa~ 175 (187)
T PRK07455 112 ALTPTEIVTAW------------QAGASCVKV-FPVQAVGGADYIKSLQGPLG--HIPLIPTGGV-TLENAQAFIQAGAI 175 (187)
T ss_pred cCCHHHHHHHH------------HCCCCEEEE-CcCCcccCHHHHHHHHhhCC--CCcEEEeCCC-CHHHHHHHHHCCCe
Q ss_pred ce
Q 046192 118 EF 119 (187)
Q Consensus 118 ~y 119 (187)
..
T Consensus 176 ~v 177 (187)
T PRK07455 176 AV 177 (187)
T ss_pred EE
No 301
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=61.50 E-value=43 Score=26.33 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=40.1
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
..++.+|+..+ ....|.++.+ +.+...+|.+.|+|...+-|+.++++..++..+
T Consensus 170 ~~v~~~r~~~~--~~~~Igvev~-s~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 170 EAVRRARAAAP--FTLKIEVEVE-TLEQLKEALEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred HHHHHHHHhCC--CCCeEEEEEC-CHHHHHHHHHcCCCEEEECCcCHHHHHHHHHHc
Confidence 35677777654 2345556654 568888999999988889999999988887654
No 302
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=61.20 E-value=1e+02 Score=26.04 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=57.8
Q ss_pred EeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH----HHH---HHHHH
Q 046192 14 VDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG----YDL---LRKIK 86 (187)
Q Consensus 14 vd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g----~~~---~~~l~ 86 (187)
+--+....+.+...|.+.||.++.- ....|+++++...--.+. ... ++.++
T Consensus 13 C~~N~~ds~~~~~~l~~~g~~~~~~----------------------~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k 70 (444)
T PRK14325 13 CQMNEYDSSKMADLLGAEGYELTDD----------------------PEEADLILLNTCSIREKAQEKVFSELGRWRKLK 70 (444)
T ss_pred CCCcHHHHHHHHHHHHHCcCEECCC----------------------cCCCCEEEEEcceeeehHHHHHHHHHHHHHHHH
Confidence 3456666778888888888876531 113579999987654332 222 34445
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHH-hCCCceeeCCCChHHHHHHHHHHh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLE-EGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~-~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
+..| ..+||+-...... ...++++ ...-||+..+-....+.+.+..+.
T Consensus 71 ~~~p--~~~vvvgGc~as~-~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~ 119 (444)
T PRK14325 71 EKNP--DLIIGVGGCVAQQ-EGEEILKRAPYVDIVFGPQTLHRLPEMIARAR 119 (444)
T ss_pred HhCC--CCEEEEECchhcc-CHHHHHhhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 6555 6666655443322 2233333 344567887777777777776653
No 303
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=61.10 E-value=57 Score=25.61 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=40.1
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
..++.+|+..+ .-..|.++.. +.+...++...|+|...+-|+.++.+...++.+
T Consensus 169 ~~v~~~r~~~~--~~~~I~vev~-t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 169 EAVKRARAAAP--FEKKIEVEVE-TLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred HHHHHHHHhCC--CCCeEEEecC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35677887654 2334555554 678888999999998889999999988877654
No 304
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.01 E-value=65 Score=23.85 Aligned_cols=30 Identities=13% Similarity=-0.051 Sum_probs=25.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEE
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTA 37 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~ 37 (187)
+.+|||.+........+...|.+.|+.+..
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~~ 35 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGADVVV 35 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEE
Confidence 458999999999999999999888988655
No 305
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=60.88 E-value=52 Score=22.68 Aligned_cols=110 Identities=11% Similarity=0.089 Sum_probs=56.7
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCH-HHHHHHHhccCccccc---ccccccccEEEEeccCCCCCHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSG-NKALEFLGLLNEDEQT---NSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~-~~a~~~l~~~~~~~~~---~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
.+++|-||+.-. +...|...|.+.|+.|..+.+- .+..+.+...-++..+ ...-...|++++-. |+..--+++
T Consensus 9 ~~l~I~iIGaGr-VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iav--pDdaI~~va 85 (127)
T PF10727_consen 9 ARLKIGIIGAGR-VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAV--PDDAIAEVA 85 (127)
T ss_dssp ---EEEEECTSC-CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S---CCHHHHHH
T ss_pred CccEEEEECCCH-HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEe--chHHHHHHH
Confidence 468888888844 4556888888889988875433 3333333221111000 01234678999876 444455688
Q ss_pred HHHHhhcCCCCCcEEEEe-CCCChhHHHHHHHhCCCce
Q 046192 83 RKIKESASLKDIPVVIMS-SENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls-~~~~~~~~~~a~~~ga~~y 119 (187)
+.|.....+..-++++-+ .....+....+.+.|+.-+
T Consensus 86 ~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~ 123 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVA 123 (127)
T ss_dssp HHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEE
T ss_pred HHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEE
Confidence 888876322234566644 4456666666777777544
No 306
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=60.83 E-value=82 Score=26.66 Aligned_cols=99 Identities=15% Similarity=0.239 Sum_probs=55.8
Q ss_pred eCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC----HHHHHHHH---Hh
Q 046192 15 DDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT----GYDLLRKI---KE 87 (187)
Q Consensus 15 d~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~----g~~~~~~l---~~ 87 (187)
--+....+.+...|.+.||.++. +. ...|++|++...--.+ .+..+..+ ++
T Consensus 17 ~~N~~ds~~~~~~l~~~G~~~~~--~~--------------------~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~ 74 (448)
T PRK14333 17 QMNKADSERMAGILEDMGYQWAE--DE--------------------LQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKH 74 (448)
T ss_pred CCcHHHHHHHHHHHHHCcCEECC--Cc--------------------ccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHh
Confidence 34566667788888888886643 11 1256999998654322 23333333 33
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHH-hCCCceeeCCCChHHHHHHHHHHhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLE-EGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~-~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
..| +.+|++....... .-...++ ...-|++..+-+...+.+.+..+..
T Consensus 75 ~~p--~~~vvv~Gc~a~~-~~~~~~~~~p~vD~v~g~~~~~~~~~ll~~~~~ 123 (448)
T PRK14333 75 KNP--DLTLVVAGCVAQQ-EGESLLRRVPELDLVMGPQHANRLEDLLEQVDA 123 (448)
T ss_pred cCC--CCEEEEECccCcc-CHHHHHhcCCCCCEEECCCCHHHHHHHHHHHhc
Confidence 333 6666655544332 2223332 3334677788777777777766554
No 307
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=60.44 E-value=46 Score=22.16 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=53.2
Q ss_pred EEEEEeCCH--HHHHHHHHHHHhCCceEEEeCCHHHHHHH-HhccCccccccccccccc-EEEEeccCCCCCHHHHHHHH
Q 046192 10 HVLAVDDSI--IDRKLIERLLKTSSYQVTAVDSGNKALEF-LGLLNEDEQTNSQVIQVN-LIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 10 ~ilivd~~~--~~~~~l~~~l~~~~~~v~~~~~~~~a~~~-l~~~~~~~~~~~~~~~~d-lvi~d~~~~~~~g~~~~~~l 85 (187)
+|.++.--. .....+...|.+.+..+.......+.... +....++ | ++++...-...+-.+.++.+
T Consensus 7 ~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------d~vi~is~sg~~~~~~~~~~~a 76 (131)
T PF01380_consen 7 RIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPD----------DLVIIISYSGETRELIELLRFA 76 (131)
T ss_dssp EEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTT----------EEEEEEESSSTTHHHHHHHHHH
T ss_pred EEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhccccccc----------ceeEeeeccccchhhhhhhHHH
Confidence 555555444 34455666666666556665555554333 4333322 3 44444322223455677766
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChH
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLA 127 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~ 127 (187)
++. +.|+|.+|+..+...... +|..+.-|...+
T Consensus 77 k~~----g~~vi~iT~~~~~~l~~~-----ad~~l~~~~~~~ 109 (131)
T PF01380_consen 77 KER----GAPVILITSNSESPLARL-----ADIVLYIPTGEE 109 (131)
T ss_dssp HHT----TSEEEEEESSTTSHHHHH-----SSEEEEEESSCG
T ss_pred Hhc----CCeEEEEeCCCCCchhhh-----CCEEEEecCCCc
Confidence 664 678999998766554432 344455554443
No 308
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=60.29 E-value=67 Score=23.76 Aligned_cols=32 Identities=22% Similarity=0.052 Sum_probs=26.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCC
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDS 40 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~ 40 (187)
.+|+|.+...-....+.+.|.+.|+.|..+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 58999999999999999888888988876543
No 309
>PRK07454 short chain dehydrogenase; Provisional
Probab=60.24 E-value=69 Score=23.88 Aligned_cols=34 Identities=15% Similarity=0.027 Sum_probs=26.9
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDS 40 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~ 40 (187)
.+.+++|.....-....+...|.+.|+.|..+..
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 3457899998888888888888888888877543
No 310
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=59.88 E-value=82 Score=24.63 Aligned_cols=110 Identities=17% Similarity=0.249 Sum_probs=63.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCC-----CCCH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-----GMTG 78 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-----~~~g 78 (187)
.+++.++.+.+.. ..+...++..+. .|.. .-+.++....+. ..|+++.-...+ ..-|
T Consensus 210 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~-------------~adi~l~~s~~~~~~~~e~~~ 275 (355)
T cd03799 210 DFRLDIVGDGPLR-DELEALIAELGLEDRVTLLGAKSQEEVRELLR-------------AADLFVLPSVTAADGDREGLP 275 (355)
T ss_pred CeEEEEEECCccH-HHHHHHHHHcCCCCeEEECCcCChHHHHHHHH-------------hCCEEEecceecCCCCccCcc
Confidence 4566666655432 344444444321 2222 233455555552 245666654432 3346
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
..+++.+.. .+|+|.... . ...+.+..+..+++..|-+.+++.+.+..++...
T Consensus 276 ~~~~Ea~a~-----G~Pvi~~~~-~---~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 276 VVLMEAMAM-----GLPVISTDV-S---GIPELVEDGETGLLVPPGDPEALADAIERLLDDP 328 (355)
T ss_pred HHHHHHHHc-----CCCEEecCC-C---CcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 667776654 778875322 2 2334566677889999999999999998887653
No 311
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=59.71 E-value=52 Score=26.17 Aligned_cols=53 Identities=9% Similarity=0.196 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
+.++.+|+..+ ..+|. ....+.+.+.+++++|+|-.++..++++++.+++..+
T Consensus 178 ~av~~~r~~~~--~~kIe--VEv~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~ 230 (284)
T PRK06096 178 GAINQLRRHAP--EKKIV--VEADTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIA 230 (284)
T ss_pred HHHHHHHHhCC--CCCEE--EECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 46777777665 45543 3335799999999999999999999999999998765
No 312
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=59.64 E-value=68 Score=23.58 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhhcCCCCCcEEE-EeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHH
Q 046192 77 TGYDLLRKIKESASLKDIPVVI-MSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPH 135 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~-ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~ 135 (187)
.+++.++.+++. + ..|+.+ +..+...+.+..+.+.|+++.+......++....++.
T Consensus 43 ~~~~~v~~i~~~-~--~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~ 99 (210)
T TIGR01163 43 FGPPVLEALRKY-T--DLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQL 99 (210)
T ss_pred cCHHHHHHHHhc-C--CCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHH
Confidence 578888999864 2 456533 4445567778888899999877765444444444433
No 313
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.64 E-value=56 Score=27.73 Aligned_cols=100 Identities=12% Similarity=0.219 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC----CHHHHHHHHHhhcCC
Q 046192 16 DSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM----TGYDLLRKIKESASL 91 (187)
Q Consensus 16 ~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~----~g~~~~~~l~~~~~~ 91 (187)
-+....+.+...|...||. ..+.+. ...|++|++...--. ..+..+..+++..|
T Consensus 14 ~N~~DSe~m~~~L~~~G~~-~~~~~~--------------------~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p- 71 (437)
T COG0621 14 MNLYDSERMAGLLEAAGYE-ELVEDP--------------------EEADVVIINTCAVREKAEQKVRSAIGELKKLKP- 71 (437)
T ss_pred ccHHHHHHHHHHHHHcCCc-cccCCc--------------------ccCCEEEEecCeeeehHHHHHHHHHHHHHHhCC-
Confidence 3455566777888777774 112211 135799999865432 34455666666654
Q ss_pred CCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 92 KDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 92 ~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+..|++..-....+ -....+..-.|.+.=|-+...+.++++....+
T Consensus 72 -~~~iiVtGC~aq~~-~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~ 117 (437)
T COG0621 72 -DAKIIVTGCLAQAE-EEILERAPEVDIVLGPQNKERLPEAIEKALRG 117 (437)
T ss_pred -CCEEEEeCCccccC-HHHHhhCCCceEEECCccHHHHHHHHHHHhhc
Confidence 66677665554444 22223344467888899999998888888754
No 314
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=59.63 E-value=65 Score=23.36 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=46.8
Q ss_pred EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC-------CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHH
Q 046192 37 AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM-------TGYDLLRKIKESASLKDIPVVIMSSENIPSRIN 109 (187)
Q Consensus 37 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~-------~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~ 109 (187)
.+.+.+++.+.. ...+|.+++.--.|.. -|++.++++.+.. .+||+.+..- +.+.+.
T Consensus 101 S~h~~~e~~~a~------------~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlGGI-~~~~i~ 164 (180)
T PF02581_consen 101 SCHSLEEAREAE------------ELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALGGI-TPENIP 164 (180)
T ss_dssp EESSHHHHHHHH------------HCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEESS---TTTHH
T ss_pred ecCcHHHHHHhh------------hcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC---CCCEEEEcCC-CHHHHH
Confidence 478888854443 2346788888765432 3888888888765 6899999886 567788
Q ss_pred HHHHhCCCcee
Q 046192 110 RCLEEGAEEFF 120 (187)
Q Consensus 110 ~a~~~ga~~yl 120 (187)
.+.+.|+++.-
T Consensus 165 ~l~~~Ga~gvA 175 (180)
T PF02581_consen 165 ELREAGADGVA 175 (180)
T ss_dssp HHHHTT-SEEE
T ss_pred HHHHcCCCEEE
Confidence 89999998864
No 315
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=59.26 E-value=65 Score=23.27 Aligned_cols=78 Identities=10% Similarity=0.162 Sum_probs=51.4
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhC--CceEEEeC-------CHHHHHHHHhccCcccccccccccccEEEEeccCCCCC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTS--SYQVTAVD-------SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT 77 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~--~~~v~~~~-------~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~ 77 (187)
...+|.++...+...+.+.+.|++. |..++... ...+.++.+ ....||+|++-.-.|...
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I-----------~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERI-----------NASGADILFVGLGAPKQE 113 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHH-----------HHcCCCEEEEECCCCHHH
Confidence 3578999999999999998888764 56655421 122235566 334566999999888766
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEe
Q 046192 78 GYDLLRKIKESASLKDIPVVIMS 100 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls 100 (187)
.++...+... +.++++..
T Consensus 114 --~~~~~~~~~l---~~~v~~~v 131 (171)
T cd06533 114 --LWIARHKDRL---PVPVAIGV 131 (171)
T ss_pred --HHHHHHHHHC---CCCEEEEe
Confidence 3566666654 34555443
No 316
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=58.54 E-value=68 Score=24.60 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=37.4
Q ss_pred cccEEEEeccCCCCCHHHHHH-------HHHhhcCCCCCcE-EEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMTGYDLLR-------KIKESASLKDIPV-VIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~-------~l~~~~~~~~~~i-I~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..|.|++=..-||..|-.+.. .+|+.....+..+ |-+-..-+.+.+..+.++||+.++.
T Consensus 130 ~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~ 196 (229)
T PRK09722 130 LLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIV 196 (229)
T ss_pred hcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 367777777789877665543 3333221113334 4455556788899999999996653
No 317
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=58.52 E-value=67 Score=25.21 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=39.8
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
..++.+|+..+ ....|.++.+ +.+.+.+|.+.|+|...+-|+.++.+.+.++.+
T Consensus 166 ~av~~~r~~~~--~~~~Igvev~-t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 166 KAVKRARAAAP--FALKIEVEVE-SLEEAEEAAEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred HHHHHHHHhCC--CCCeEEEEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35667777654 2334555554 678888999999997779999999998887764
No 318
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=58.42 E-value=55 Score=22.18 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=21.6
Q ss_pred eEEEEEeCCHHHHHHHHHHHHh-CCceEEEe
Q 046192 9 FHVLAVDDSIIDRKLIERLLKT-SSYQVTAV 38 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~-~~~~v~~~ 38 (187)
+||.|+.-.-.....+.+.+.. .++++..+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~ 31 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGA 31 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEE
Confidence 4888999866666667776655 67877763
No 319
>PRK12744 short chain dehydrogenase; Provisional
Probab=58.34 E-value=79 Score=23.92 Aligned_cols=37 Identities=22% Similarity=0.033 Sum_probs=28.5
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEE
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTA 37 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~ 37 (187)
|+++.....+++|.....-....+.+.|.+.|+.+..
T Consensus 1 ~~~~~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~ 37 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVA 37 (257)
T ss_pred CCCCCCCCcEEEEECCCchHHHHHHHHHHHCCCcEEE
Confidence 5544444568999999999999999999888887443
No 320
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=58.26 E-value=87 Score=24.38 Aligned_cols=43 Identities=16% Similarity=0.395 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
-.+.++.+|+.. +.||++=..-.+.+.+..+...|||+++.-.
T Consensus 186 ~~~~i~~lr~~~---~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAYS---AKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhhc---CCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 456777777753 5687654444568899999999999998864
No 321
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=58.24 E-value=1.2e+02 Score=25.84 Aligned_cols=99 Identities=11% Similarity=0.219 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH----H---HHHHHHhh
Q 046192 16 DSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY----D---LLRKIKES 88 (187)
Q Consensus 16 ~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~----~---~~~~l~~~ 88 (187)
-+....+.+...|...||.++. + ....|+|+++...--...- . .++.+++.
T Consensus 22 ~N~~dse~~~~~l~~~G~~~~~--~--------------------~~~ADvviiNTC~v~~~a~~~~~~~i~~~~~~k~~ 79 (449)
T PRK14332 22 MNEYDSGIVSSLMRDAEYSTSN--D--------------------PENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKKR 79 (449)
T ss_pred CCHHHHHHHHHHHHHCcCEECC--C--------------------cccCCEEEEEccCeechHHHHHHHHHHHHHHHHHh
Confidence 3555566777777777875532 1 1236799999976543322 2 23444555
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHH-HhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCL-EEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~-~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+| +.+|++...... ..-...+ ....-|++.-+-....+.+.+..+..+
T Consensus 80 ~p--~~~ivv~GC~a~-~~~e~l~~~~~~vD~vvg~~~~~~i~~ll~~~~~~ 128 (449)
T PRK14332 80 NP--NLVIGVLGCMAQ-NLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRNG 128 (449)
T ss_pred CC--CCEEEEECcccc-cchHHHhhccCCceEEECCCCHHHHHHHHHHHhcC
Confidence 44 555555443322 1222222 222267888888888888888776543
No 322
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.18 E-value=41 Score=26.65 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=47.7
Q ss_pred EEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 66 LIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 66 lvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
++|-|-+..-..-.+.++.+|+..+ ..+|.+ ...+.+.+.+|.++|+|-..+-.++++++.+++..+..
T Consensus 157 vLikdnHi~~~~i~~av~~~r~~~~--~~kIeV--Ev~~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~ 225 (278)
T PRK08385 157 ILIKDNHLALVPLEEAIRRAKEFSV--YKVVEV--EVESLEDALKAAKAGADIIMLDNMTPEEIREVIEALKR 225 (278)
T ss_pred EEEccCHHHHHHHHHHHHHHHHhCC--CCcEEE--EeCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHh
Confidence 3444444332322246677777655 566443 33478999999999999888999999999999887643
No 323
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=58.18 E-value=78 Score=23.82 Aligned_cols=101 Identities=18% Similarity=0.232 Sum_probs=62.6
Q ss_pred HHHHHHHHhCCceEEEeC---CHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH-------HHHhhcCC
Q 046192 22 KLIERLLKTSSYQVTAVD---SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR-------KIKESASL 91 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~-------~l~~~~~~ 91 (187)
..+.+.+++.|..+..+- +.-+.++.. ....|++++-.--|+..|-.|.+ +||+.+|
T Consensus 102 ~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~------------~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp- 168 (224)
T KOG3111|consen 102 AELVEKIREKGMKVGLALKPGTPVEDLEPL------------AEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYP- 168 (224)
T ss_pred HHHHHHHHHcCCeeeEEeCCCCcHHHHHHh------------hccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCC-
Confidence 455666666776665532 222222222 23578999999999988776654 6777665
Q ss_pred CCCcEEEEeCCCChhHHHHHHHhCCCceee-----CCCChHHHHHHHHHHh
Q 046192 92 KDIPVVIMSSENIPSRINRCLEEGAEEFFL-----KPVQLADVNKLKPHLM 137 (187)
Q Consensus 92 ~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~-----kP~~~~~l~~~i~~~~ 137 (187)
+ ..|=+-..-..+.+-.+.++||+..+. +--++.++...++...
T Consensus 169 -~-l~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v 217 (224)
T KOG3111|consen 169 -N-LDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSV 217 (224)
T ss_pred -C-ceEEecCCcCcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHH
Confidence 3 345466666788888999999986543 2335666555554443
No 324
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=57.94 E-value=1.1e+02 Score=25.47 Aligned_cols=111 Identities=11% Similarity=0.064 Sum_probs=66.2
Q ss_pred ceEEEEEeCCH-----HHHHHHHHHHHhCCc--eEEEeC--CHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 8 QFHVLAVDDSI-----IDRKLIERLLKTSSY--QVTAVD--SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 8 ~~~ilivd~~~-----~~~~~l~~~l~~~~~--~v~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
..+++|+++.+ ...+.|.+..+..+. .|.... +.++..+.+. ..|+++. ......-|
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~-------------~adv~v~-~s~~E~Fg 338 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELS-------------TASIGLH-TMWNEHFG 338 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHH-------------hCeEEEE-CCccCCcc
Confidence 47888888752 345566666665553 344332 3556666663 2346665 33345558
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+.+++.+.. .+|+|..........+..-...|..+++.. +++++.+++..++..
T Consensus 339 i~~lEAMa~-----G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~ 392 (419)
T cd03806 339 IGVVEYMAA-----GLIPLAHASGGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSL 392 (419)
T ss_pred cHHHHHHHc-----CCcEEEEcCCCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHhC
Confidence 888888765 667776543322222211111577888863 899999999988864
No 325
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=57.82 E-value=80 Score=23.84 Aligned_cols=43 Identities=7% Similarity=-0.106 Sum_probs=31.7
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEF 47 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~ 47 (187)
.....+++|.....-....+...|.+.|+.|..+....+..+.
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~ 45 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARL 45 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 3344578999999999999999998889988876444443333
No 326
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.76 E-value=94 Score=24.61 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=58.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHH----hCC--ceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLK----TSS--YQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDL 81 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~----~~~--~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 81 (187)
-.|||-|+|-.+...+...+. ..+ ..+. .+.+.+++.+... ..+|.+.+|- -|.+.
T Consensus 159 d~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~------------~gaDyI~lD~-----~~~e~ 221 (277)
T PRK08072 159 DGVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVA------------AGADIIMFDN-----RTPDE 221 (277)
T ss_pred ceEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH------------cCCCEEEECC-----CCHHH
Confidence 367888888776655555553 233 2333 4788888877762 2467998872 45566
Q ss_pred HHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 82 LRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
++++.+... ..+|+ ..+..-+.+.+.+....|++..
T Consensus 222 l~~~~~~~~-~~i~i-~AiGGIt~~ni~~~a~~Gvd~I 257 (277)
T PRK08072 222 IREFVKLVP-SAIVT-EASGGITLENLPAYGGTGVDYI 257 (277)
T ss_pred HHHHHHhcC-CCceE-EEECCCCHHHHHHHHHcCCCEE
Confidence 777666432 12333 3444568888999999999875
No 327
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=57.65 E-value=69 Score=24.46 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=40.3
Q ss_pred cccEEEEeccCCCCCHHHHH----HHH---HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMTGYDLL----RKI---KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~----~~l---~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..|+|++=..-||..|-.++ +++ |+......-..|-+-..-+.+.+..+..+||+-|+.
T Consensus 131 ~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~Va 196 (220)
T COG0036 131 DVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVA 196 (220)
T ss_pred hCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 47899999999987665433 333 433321123456677778899999999999997654
No 328
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.64 E-value=64 Score=25.54 Aligned_cols=70 Identities=6% Similarity=0.105 Sum_probs=47.0
Q ss_pred ccEEEEeccC-CCCC-HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 64 VNLIITDYCM-PGMT-GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 64 ~dlvi~d~~~-~~~~-g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
.|.|++.-+. .-.. -.+.++..|+..+ ...+|-++.+ +.+.+.+|.+.|+|.....++.++.+..+++.+
T Consensus 158 ~d~vlikdnHi~~~g~~~~~v~~aR~~~~--~~~~Igvsv~-tleea~~A~~~gaDyI~lD~~~~e~l~~~~~~~ 229 (277)
T PRK08072 158 YDGVMIKDNHIAFCGSITKAVTSVREKLG--HMVKIEVETE-TEEQVREAVAAGADIIMFDNRTPDEIREFVKLV 229 (277)
T ss_pred CceEEEchhHHHhhCCHHHHHHHHHHhCC--CCCEEEEEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhc
Confidence 4555554432 2222 2346667777654 3456667765 677888999999998888899999888877644
No 329
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=57.58 E-value=87 Score=24.20 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=40.9
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.|++++-... ..-|..+++.+.. .+|+|+....... +.+.. .+++.++-+.+++.+.+..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~a~-----g~PvI~~~~~~~~----e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAMAC-----GLPVVATDVGDNA----ELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHHhc-----CCCEEEcCCCChH----HHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 4577665444 3445667777654 7788763332222 22222 67899998999999999888764
No 330
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=57.54 E-value=80 Score=23.78 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHhhcCCCCC-cEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 74 PGMTGYDLLRKIKESASLKDI-PVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 74 ~~~~g~~~~~~l~~~~~~~~~-~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
.+.+|.++++.+.+.....+. .-|+..+-.+...+.++..+|++.+-.-|
T Consensus 136 ~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~ 186 (211)
T cd00956 136 LGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPP 186 (211)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCH
Confidence 357899988887665432232 24446666788999999999999765544
No 331
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=57.50 E-value=58 Score=24.54 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=25.9
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
+||+++|........+.+.|...|+.+..+.
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~ 31 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWR 31 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEE
Confidence 3789999999888889999998898777654
No 332
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.35 E-value=98 Score=24.69 Aligned_cols=58 Identities=21% Similarity=0.429 Sum_probs=39.9
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.+|++++ -|+|| .+++..+.... .++||+-+-. |--+|+. +++++++.++++++.++.
T Consensus 64 ~~dlvi~----lGGDG-T~L~aa~~~~~-~~~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 64 SADMVIS----IGGDG-TFLRTATYVGN-SNIPILGINT-------------GRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCCEEEE----ECCcH-HHHHHHHHhcC-CCCCEEEEec-------------CCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 4567665 25677 56666665443 3789886654 3346766 678899999999999874
No 333
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=57.28 E-value=75 Score=24.23 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=41.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG 75 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~ 75 (187)
.-++.-+|-++.....-++.+++.|. .+...-. .++++.+... ...+||+|++|..=+.
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~--------~~~~fDliFIDadK~~ 144 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRL--------LDGSFDLVFIDADKAD 144 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhc--------cCCCccEEEEeCChhh
Confidence 45899999999999999999998874 3444332 4455555331 2357999999985443
No 334
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.87 E-value=64 Score=25.77 Aligned_cols=71 Identities=10% Similarity=0.088 Sum_probs=48.5
Q ss_pred ccEEEEeccCCCC--CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 64 VNLIITDYCMPGM--TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 64 ~dlvi~d~~~~~~--~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.|.|++--+.-.. +-.+.++..|+..++ ..+|.+ ...+.+.+.+|.++|||-.++-.++++++.+++..+.
T Consensus 167 sD~iLIkdNHi~~~g~i~~av~~~r~~~~~-~~kIeV--Ev~tleea~~a~~agaDiImLDnmspe~l~~av~~~~ 239 (290)
T PRK06559 167 SDAIMLKDNHIAAVGSVQKAIAQARAYAPF-VKMVEV--EVESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLIA 239 (290)
T ss_pred cceEEEcHHHHHhhccHHHHHHHHHHhCCC-CCeEEE--ECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhc
Confidence 4555554433222 224567777776652 234433 3357899999999999999999999999999987553
No 335
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=56.73 E-value=32 Score=27.55 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=42.9
Q ss_pred CceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 046192 32 SYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSEN 103 (187)
Q Consensus 32 ~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~ 103 (187)
|-.+.+......+++.+....+ ....+.+++.+.. |...|..+.+.|++. ++++.++.+..
T Consensus 120 g~~IlTh~~S~~v~~~l~~A~~------~~k~~~V~VtESR-P~~eG~~~ak~L~~~----gI~~~~I~Dsa 180 (301)
T COG1184 120 GDVILTHSFSKTVLEVLKTAAD------RGKRFKVIVTESR-PRGEGRIMAKELRQS----GIPVTVIVDSA 180 (301)
T ss_pred CCEEEEecCcHHHHHHHHHhhh------cCCceEEEEEcCC-CcchHHHHHHHHHHc----CCceEEEechH
Confidence 4445555566777777765554 3345788888865 778899999999986 56777777653
No 336
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=56.60 E-value=1.1e+02 Score=24.92 Aligned_cols=30 Identities=23% Similarity=0.129 Sum_probs=26.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEE
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTA 37 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~ 37 (187)
+-.|+||+....+....+..|+..|+.|..
T Consensus 76 pd~VLIIGGp~AVs~~yE~~Lks~GitV~R 105 (337)
T COG2247 76 PDLVLIIGGPIAVSPNYENALKSLGITVKR 105 (337)
T ss_pred CceEEEECCCCcCChhHHHHHHhCCcEEEE
Confidence 357999999999999999999999987765
No 337
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=56.14 E-value=63 Score=27.78 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=46.5
Q ss_pred CCceEEEEEeCCHHHH-HHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-----
Q 046192 6 DSQFHVLAVDDSIIDR-KLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY----- 79 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~-~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~----- 79 (187)
...+||++||+.|... ..+.+.|...|+.|..+.-. ++.++- ...+-|++....--.+|.
T Consensus 383 ~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~--a~syim------------~evtkvfLGahailsNG~vysR~ 448 (556)
T KOG1467|consen 383 GKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLIN--AASYIM------------LEVTKVFLGAHAILSNGAVYSRV 448 (556)
T ss_pred CcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEeh--hHHHHH------------HhcceeeechhhhhcCcchhhhc
Confidence 3468999999999876 44555666678777654221 222221 123467776654333332
Q ss_pred --HHHHHHHhhcCCCCCcEEEEeCC
Q 046192 80 --DLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 80 --~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
..+... .+.. ++|||++...
T Consensus 449 GTa~valv-Ana~--nVPVlVCCE~ 470 (556)
T KOG1467|consen 449 GTACVALV-ANAF--NVPVLVCCEA 470 (556)
T ss_pred chHHHHHH-hccc--CCCEEEEech
Confidence 333333 3333 8999999875
No 338
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.11 E-value=1e+02 Score=24.52 Aligned_cols=106 Identities=15% Similarity=0.237 Sum_probs=59.1
Q ss_pred EEEEEeCC-HHHH---HHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 10 HVLAVDDS-IIDR---KLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 10 ~ilivd~~-~~~~---~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
+|.|+-.. .... ..+...|++.|+.+.........+.... .... .....+|++|+ -|+|| .+++..
T Consensus 12 ~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~----~~~~~~Dlvi~----iGGDG-T~L~aa 81 (287)
T PRK14077 12 KIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPG-YGLD----ELFKISDFLIS----LGGDG-TLISLC 81 (287)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccc-cchh----hcccCCCEEEE----ECCCH-HHHHHH
Confidence 47776443 2222 3445556667877776443322221000 0000 01124667665 35677 466666
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+.... .++||+-+.. |-.+|+. +++++++...++++.++.
T Consensus 82 ~~~~~-~~~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 82 RKAAE-YDKFVLGIHA-------------GHLGFLT-DITVDEAEKFFQAFFQGE 121 (287)
T ss_pred HHhcC-CCCcEEEEeC-------------CCcccCC-cCCHHHHHHHHHHHHcCC
Confidence 65442 3789887654 3456766 678899999999998873
No 339
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.10 E-value=1e+02 Score=24.58 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=58.8
Q ss_pred EEEEEeC--CHH---HHHHHHHHHHhCCceEEEeCCHHHHHHH--HhccC-cccccccccccccEEEEeccCCCCCHHHH
Q 046192 10 HVLAVDD--SII---DRKLIERLLKTSSYQVTAVDSGNKALEF--LGLLN-EDEQTNSQVIQVNLIITDYCMPGMTGYDL 81 (187)
Q Consensus 10 ~ilivd~--~~~---~~~~l~~~l~~~~~~v~~~~~~~~a~~~--l~~~~-~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 81 (187)
+|.|+-. .+. ....+.+.|++.|+++.......+.+.. ..... .+ ....+|+|++= |.|| .+
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~-----~~~~~d~vi~~----GGDG-t~ 75 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKL-----LGEVCDLVIVV----GGDG-SL 75 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhh-----cccCCCEEEEE----eCcH-HH
Confidence 5777633 232 3445666677778887765432221110 00000 00 11236676652 5666 34
Q ss_pred HHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 82 LRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
++..+.... .++||+-+.. |=.+|+. .++++++..++++++++.
T Consensus 76 l~~~~~~~~-~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 76 LGAARALAR-HNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGH 119 (295)
T ss_pred HHHHHHhcC-CCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCC
Confidence 455544332 3789887664 3446774 678999999999999874
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.08 E-value=1.7 Score=39.36 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.5
Q ss_pred hhhhhcccccccCCCCCCCccC
Q 046192 165 RTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 165 ~~~~~e~~~l~l~~~g~~~~ei 186 (187)
.++.||.+|+.+++.|+||+||
T Consensus 831 ~Ls~RE~eVL~Lia~G~SN~eI 852 (894)
T COG2909 831 PLSQRELEVLGLIAQGLSNEEI 852 (894)
T ss_pred CccHHHHHHHHHHHccCCHHHH
Confidence 4899999999999999999997
No 341
>PRK10537 voltage-gated potassium channel; Provisional
Probab=55.98 E-value=1.1e+02 Score=25.48 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=53.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHhc------cCc-ccccc--cccccccEEEEeccCCCCC
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAV-DSGNKALEFLGL------LNE-DEQTN--SQVIQVNLIITDYCMPGMT 77 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~-~~~~~a~~~l~~------~~~-~~~~~--~~~~~~dlvi~d~~~~~~~ 77 (187)
+-+++|++-.+.-+...+. |.+.|+.++.. .+..+ +.... .+| |++++ ..-...+.+++-..-. .+
T Consensus 240 k~HvII~G~g~lg~~v~~~-L~~~g~~vvVId~d~~~--~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD-~~ 315 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLG-LRQRGQAVTVIVPLGLE--HRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDND-AD 315 (393)
T ss_pred CCeEEEECCChHHHHHHHH-HHHCCCCEEEEECchhh--hhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCCh-HH
Confidence 4578888888877665444 55556555443 22111 11100 000 00000 1122344555543222 22
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
-...+...|+.+| +.++++... +.+......+.|++..+.
T Consensus 316 Nl~ivL~ar~l~p--~~kIIa~v~--~~~~~~~L~~~GaD~VIs 355 (393)
T PRK10537 316 NAFVVLAAKEMSS--DVKTVAAVN--DSKNLEKIKRVHPDMIFS 355 (393)
T ss_pred HHHHHHHHHHhCC--CCcEEEEEC--CHHHHHHHHhcCCCEEEC
Confidence 3345556777765 778887666 356677777889876544
No 342
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=55.82 E-value=1.2e+02 Score=25.21 Aligned_cols=90 Identities=12% Similarity=0.108 Sum_probs=48.2
Q ss_pred eEEEEEeCCHH---HHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccC-CCCCH--HHHH
Q 046192 9 FHVLAVDDSII---DRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM-PGMTG--YDLL 82 (187)
Q Consensus 9 ~~ilivd~~~~---~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~-~~~~g--~~~~ 82 (187)
.+|.++..|.. ..+.+..+-+..|..+..+.+..+....+... ...|+|++|.-- ...+. .+.+
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l----------~~~DlVLIDTaG~~~~d~~l~e~L 237 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL----------RNKHMVLIDTIGMSQRDRTVSDQI 237 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh----------cCCCEEEEcCCCCCcccHHHHHHH
Confidence 46777776665 33555555556677677666665555544321 236799999842 22222 2333
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHH
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRIN 109 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~ 109 (187)
..+..... +.-.++++++....+...
T Consensus 238 a~L~~~~~-~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 238 AMLHGADT-PVQRLLLLNATSHGDTLN 263 (374)
T ss_pred HHHhccCC-CCeEEEEecCccChHHHH
Confidence 33433221 123377777765554443
No 343
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=55.58 E-value=76 Score=25.15 Aligned_cols=54 Identities=11% Similarity=0.232 Sum_probs=43.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
+.++.+|+..+ ..+|.+ .-.+.+.+.++.++|++-.++..++++++.+.++.+.
T Consensus 177 ~av~~~r~~~~--~~kIeV--Ev~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l~ 230 (277)
T TIGR01334 177 GAIGRLKQTAP--ERKITV--EADTIEQALTVLQASPDILQLDKFTPQQLHHLHERLK 230 (277)
T ss_pred HHHHHHHHhCC--CCCEEE--ECCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHh
Confidence 57778887665 455443 3347899999999999999999999999999988763
No 344
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=55.54 E-value=96 Score=24.08 Aligned_cols=64 Identities=9% Similarity=0.233 Sum_probs=43.9
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.|++++-.......|..+++.+.. .+|+|...... ..+.+..|..+++..+ .+++.+++..+..
T Consensus 244 ~d~~v~ps~~~E~~~~~~lEAma~-----G~PvI~~~~~~----~~e~i~~~~~g~l~~~--~~~l~~~l~~l~~ 307 (335)
T cd03802 244 ARALLFPILWEEPFGLVMIEAMAC-----GTPVIAFRRGA----VPEVVEDGVTGFLVDS--VEELAAAVARADR 307 (335)
T ss_pred CcEEEeCCcccCCcchHHHHHHhc-----CCCEEEeCCCC----chhheeCCCcEEEeCC--HHHHHHHHHHHhc
Confidence 457777655556667777777764 67888544332 2345567778899887 8888888887743
No 345
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.44 E-value=1e+02 Score=24.24 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=40.1
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCC-CCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASL-KDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~-~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+|++++ -|+|| .+++..+..... .++|++-+.. |-.+|+. .++++++.+.++++.++.
T Consensus 36 ~Dlvi~----iGGDG-T~L~a~~~~~~~~~~iPilGIN~-------------G~lGFL~-~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 36 PDIVIS----VGGDG-TLLSAFHRYENQLDKVRFVGVHT-------------GHLGFYT-DWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCEEEE----ECCcH-HHHHHHHHhcccCCCCeEEEEeC-------------CCceecc-cCCHHHHHHHHHHHHcCC
Confidence 456665 25677 566776664421 3788876553 5567888 678899999999999873
No 346
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=55.33 E-value=1.1e+02 Score=25.05 Aligned_cols=152 Identities=6% Similarity=-0.006 Sum_probs=74.7
Q ss_pred ceEEEEEeCC----HHHHHHHHHHHHhCCceEEEeCC--------H---HHHHHHHhccCcccccccccccccEEEEecc
Q 046192 8 QFHVLAVDDS----IIDRKLIERLLKTSSYQVTAVDS--------G---NKALEFLGLLNEDEQTNSQVIQVNLIITDYC 72 (187)
Q Consensus 8 ~~~ilivd~~----~~~~~~l~~~l~~~~~~v~~~~~--------~---~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~ 72 (187)
.-+|++.-.. ...+..+.+.|++.|..|..+.. . .+....+ ....+|+|++--.
T Consensus 142 g~~vli~~~~~~~~~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l-----------~~~~~d~v~FtS~ 210 (381)
T PRK07239 142 GKRIAVQLHGATDEWEPLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAI-----------ASRGLDAVTFTSA 210 (381)
T ss_pred CCEEEEEcCCCccccCchHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHH-----------HcCCccEEEEcCH
Confidence 3467775322 01256788888888865554221 1 2333444 2335677776531
Q ss_pred CCCCCHHH-HHHHHHhhc--------CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhh
Q 046192 73 MPGMTGYD-LLRKIKESA--------SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKE 143 (187)
Q Consensus 73 ~~~~~g~~-~~~~l~~~~--------~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~ 143 (187)
++.+ |++.+.... ....+.++.++. .....+-+.|...++.+.++.+.|.+.+.....+....
T Consensus 211 ----stv~~f~~~l~~~~~~~~~~~~~~~~~~i~aIGp----~Ta~al~~~G~~~~vp~~~t~~~Lv~~i~~~~~~~~~~ 282 (381)
T PRK07239 211 ----PAVAALLERAREMGLLDQLLAALRTDVLAACVGP----VTAAPLVRAGVPTSAPERMRLGALARHITEELPLRRAR 282 (381)
T ss_pred ----HHHHHHHHHHHHcCChHHHHHhhccCCEEEEECH----HHHHHHHHcCCCccCCCCCCHHHHHHHHHHHhhhhcCc
Confidence 2222 444443211 001344544443 34445556676556677778888988887777665421
Q ss_pred ccC--CCccccccccccccccchhhhhhcccccccCC
Q 046192 144 IKE--PNNINNKRKGLEEIDSADRTRTRLNDTIDINN 178 (187)
Q Consensus 144 ~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~l~l~~ 178 (187)
... ....+........-...-.++.+|.++|.++.
T Consensus 283 ~~~~~~~~l~~~~~~l~~~~~~i~Lt~~E~~lL~~L~ 319 (381)
T PRK07239 283 TLRAAGHVLEIRGHAVVVDGEVKPLSPAPMALLRALA 319 (381)
T ss_pred eEEECCEEEECCCCEEEECCEEEEcCHHHHHHHHHHH
Confidence 111 11111111111111222346777777776654
No 347
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=55.29 E-value=92 Score=23.74 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHhhcCC--CCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 74 PGMTGYDLLRKIKESASL--KDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 74 ~~~~g~~~~~~l~~~~~~--~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
.+.+|+.+++.+++.... .++ -|+.++..+...+.+++..|++.+-.-|
T Consensus 138 ~g~dg~~~i~~i~~~~~~~~~~t-kILaAS~r~~~~v~~~~~~G~d~vTip~ 188 (220)
T PRK12653 138 QGGSGIQTVTDLQQLLKMHAPQA-KVLAASFKTPRQALDCLLAGCESITLPL 188 (220)
T ss_pred cCCChHHHHHHHHHHHHhcCCCc-EEEEEecCCHHHHHHHHHcCCCEEECCH
Confidence 467899988887665421 134 4445566678888889999998665543
No 348
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=55.18 E-value=1.1e+02 Score=24.81 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 046192 20 DRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIM 99 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~l 99 (187)
....|.+..++.|..+....-..+.++.+.... +=++-+-..++.-+.+++.+.+. +.|||+=
T Consensus 77 ~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~-------------v~~~KIaS~~~~n~pLL~~~A~~----gkPvilS 139 (329)
T TIGR03569 77 DHRELKEYCESKGIEFLSTPFDLESADFLEDLG-------------VPRFKIPSGEITNAPLLKKIARF----GKPVILS 139 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC-------------CCEEEECcccccCHHHHHHHHhc----CCcEEEE
Confidence 445566666677887777666677777774332 33555666667778999998875 6799998
Q ss_pred eCCCChhHHHHHHH----hCCC--ceee------CCCChHHH-HHHHHHHhh
Q 046192 100 SSENIPSRINRCLE----EGAE--EFFL------KPVQLADV-NKLKPHLMK 138 (187)
Q Consensus 100 s~~~~~~~~~~a~~----~ga~--~yl~------kP~~~~~l-~~~i~~~~~ 138 (187)
|..++.+.+..|.+ .|.. ++++ .|...+.+ +.++..+.+
T Consensus 140 tGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~ 191 (329)
T TIGR03569 140 TGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKE 191 (329)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHH
Confidence 88888777766653 3543 2433 36656555 445544443
No 349
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=55.17 E-value=96 Score=23.94 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=43.6
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.|+++.-... +.-|..+++.+.. ++|+|+.... ...+.+..+..+++.+|.+.+++..++..+....
T Consensus 279 ad~~i~~~~~-~~~~~~~~Ea~~~-----G~pvI~~~~~----~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 279 ADVFVLPSLR-EGFGLVLLEAMAC-----GLPVVATDVG----GIPEIITDGENGLLVPPGDPEALAEAILRLLADP 345 (377)
T ss_pred cCeeecchhh-ccCChHHHHHHhc-----CCCEEEecCC----ChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCc
Confidence 3455543322 3445566666654 7788753322 2334566677789999999999999999888653
No 350
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=54.86 E-value=1.3e+02 Score=25.36 Aligned_cols=107 Identities=7% Similarity=0.061 Sum_probs=59.8
Q ss_pred eEEEEEeCC-HHHHHHHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 9 FHVLAVDDS-IIDRKLIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 9 ~~ilivd~~-~~~~~~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
.+++|+++- +.....+.++..+.+..+.. ..+.+.....+. ..|++++-.. ....|+..++.+
T Consensus 321 ~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~aDv~l~pS~-~E~~gl~~lEAm 386 (473)
T TIGR02095 321 GQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYA-------------GADFILMPSR-FEPCGLTQLYAM 386 (473)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH-------------hCCEEEeCCC-cCCcHHHHHHHH
Confidence 566666655 34445555555444433332 223333333331 2457766432 345566666666
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhC------CCceeeCCCChHHHHHHHHHHhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEG------AEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~g------a~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.. .+|+|+.....-.+ ....| .++++..|.++++|..++.+++.
T Consensus 387 a~-----G~pvI~s~~gg~~e----~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 387 RY-----GTVPIVRRTGGLAD----TVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred HC-----CCCeEEccCCCccc----eEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 54 66776543322222 22333 78899999999999999988776
No 351
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=54.47 E-value=1.1e+02 Score=24.37 Aligned_cols=107 Identities=16% Similarity=0.266 Sum_probs=59.7
Q ss_pred EEEEEeC--CHHHH---HHHHHHHHhCCceEEEeCCHHHHHHHHh--ccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 10 HVLAVDD--SIIDR---KLIERLLKTSSYQVTAVDSGNKALEFLG--LLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 10 ~ilivd~--~~~~~---~~l~~~l~~~~~~v~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
+|.|+-. .+... ..+.+.|+..|+++.............. ..... .....+|++|+= |+|| .++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~----~~~~~~d~vi~~----GGDG-t~l 77 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPE----EIGARADLAVVL----GGDG-TML 77 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChh----HhccCCCEEEEE----CCcH-HHH
Confidence 4776633 33333 4555556667887766433222111000 00000 011246777763 5676 466
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+.++.... .++|++-+.. |=-+|+. .++++++...+.++.++.
T Consensus 78 ~~~~~~~~-~~~pilGIn~-------------G~lGFL~-~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 78 GIGRQLAP-YGVPLIGINH-------------GRLGFIT-DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred HHHHHhcC-CCCCEEEEcC-------------CCccccc-cCCHHHHHHHHHHHHcCC
Confidence 66665432 3788886653 4446877 788899999999998874
No 352
>PRK05867 short chain dehydrogenase; Provisional
Probab=54.41 E-value=92 Score=23.48 Aligned_cols=43 Identities=19% Similarity=-0.018 Sum_probs=31.0
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHH
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALE 46 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~ 46 (187)
+.....+++|.+...-....+...|.+.|+.|..+....+.++
T Consensus 5 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~ 47 (253)
T PRK05867 5 FDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALE 47 (253)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 3334467889999888888999999888998877544333333
No 353
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=54.32 E-value=1.1e+02 Score=24.31 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=59.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCC--ceEEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSS--YQVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~--~~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
++||.||+-...........+...+ +.+..+ .+.+.+.+..... .+.-..-| .+
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~-----------~~~~~~~~-----------~~ 60 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF-----------GIAKAYTD-----------LE 60 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc-----------CCCcccCC-----------HH
Confidence 4899999987666655555665543 355543 3333333333211 11111111 22
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLMK 138 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~~ 138 (187)
.+-+... -+.-+|........+.+.+|+++|.+=++-||+. .++..+.++...+
T Consensus 61 ~ll~~~~-iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 61 ELLADPD-IDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred HHhcCCC-CCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 3322210 1343444445567888999999999999999985 5555544444443
No 354
>PRK07478 short chain dehydrogenase; Provisional
Probab=54.15 E-value=92 Score=23.45 Aligned_cols=35 Identities=9% Similarity=-0.073 Sum_probs=27.8
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
.....+++|.....-....+...|.+.|+.|....
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~ 37 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGA 37 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 33445889999998888999999988898887653
No 355
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.90 E-value=58 Score=25.70 Aligned_cols=55 Identities=4% Similarity=0.161 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
.+.++.+|+..|. ..+| ....++.+.+..|.++|+|-..+-.++++++.++++.+
T Consensus 169 ~~~v~~~k~~~p~-~~~I--~VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 169 KEFIQHARKNIPF-TAKI--EIECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred HHHHHHHHHhCCC-CceE--EEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4577888876541 1333 34555899999999999998888999999999998764
No 356
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=53.78 E-value=73 Score=22.14 Aligned_cols=83 Identities=13% Similarity=0.203 Sum_probs=46.5
Q ss_pred EEEEeCCHHHH--HHHHHHHHhCCceEE--EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 11 VLAVDDSIIDR--KLIERLLKTSSYQVT--AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 11 ilivd~~~~~~--~~l~~~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
|++++|.-... ..+.+.+- +..+. .-.+..+++..+..... ....+|+|++-+-..+..-.+-++.+.
T Consensus 2 v~~~GDSv~~~~~~~~~~~~p--~~~i~a~~g~~~~~~~~~l~~~~~------~~~~~d~vvi~lGtNd~~~~~nl~~ii 73 (150)
T cd01840 2 ITAIGDSVMLDSSPALQEIFP--NIQIDAKVGRQMSEAPDLIRQLKD------SGKLRKTVVIGLGTNGPFTKDQLDELL 73 (150)
T ss_pred eeEEeehHHHchHHHHHHHCC--CCEEEeeecccHHHHHHHHHHHHH------cCCCCCeEEEEecCCCCCCHHHHHHHH
Confidence 56777777665 34444432 23332 23455666666643221 234578999988777754444445454
Q ss_pred hhcCCCCCcEEEEeCC
Q 046192 87 ESASLKDIPVVIMSSE 102 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~ 102 (187)
+..+ ++.+|++++..
T Consensus 74 ~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 74 DALG-PDRQVYLVNPH 88 (150)
T ss_pred HHcC-CCCEEEEEECC
Confidence 4433 25778877764
No 357
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=53.68 E-value=97 Score=23.57 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=40.4
Q ss_pred EEEEeccCCC---CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 66 LIITDYCMPG---MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 66 lvi~d~~~~~---~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
++++|+.-.+ ..-+++++.+++.. .+|+++-..-.+.+.+..++..|++..+.
T Consensus 44 i~i~d~~~~~~~~~~~~~~i~~i~~~~---~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 44 LVFLDITASSEGRETMLDVVERVAEEV---FIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred EEEEcCCcccccCcccHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 7788887432 22456788888764 68999999888999999999999886643
No 358
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=53.62 E-value=59 Score=25.69 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=37.9
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCc------eeeCCCChHHHHHHHHHH
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEE------FFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~------yl~kP~~~~~l~~~i~~~ 136 (187)
+.+..+++.. ++|||....-.+.+.+.+++..||+. ++.+|.-..++.+-+...
T Consensus 224 ~~v~~i~~~~---~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~ 283 (300)
T TIGR01037 224 RMVYDVYKMV---DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAF 283 (300)
T ss_pred HHHHHHHhcC---CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHH
Confidence 5667777653 68999999999999999999999886 455563333333333333
No 359
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.59 E-value=73 Score=24.19 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=38.9
Q ss_pred EEEEeccCC---CCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 66 LIITDYCMP---GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 66 lvi~d~~~~---~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+++.|+... ....+++++.+.+.. ++|+++...-.+.+.+.+.+..|+++.+.
T Consensus 166 i~~~~~~~~g~~~g~~~~~i~~i~~~~---~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 166 ILFTNVDVEGLLEGVNTEPVKELVDSV---DIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred EEEEeecCCCCcCCCCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 666666432 223567788888754 68999998888888888999999987543
No 360
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=53.15 E-value=72 Score=24.92 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=43.9
Q ss_pred CceEEEEEeCCHHHHH-HHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC-------CH
Q 046192 7 SQFHVLAVDDSIIDRK-LIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM-------TG 78 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~-~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~-------~g 78 (187)
..++|.++|..|.... .+...|...|+.|....+..-+ ..+. + ..|.|++..+.--. .|
T Consensus 132 ~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~~~~-~~m~-----------~-~vd~VliGad~v~~nG~v~nk~G 198 (282)
T PF01008_consen 132 KKFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDSAVG-YVMP-----------R-DVDKVLIGADAVLANGGVVNKVG 198 (282)
T ss_dssp EEEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GGGHH-HHHH-----------C-TESEEEEE-SEEETTS-EEEETT
T ss_pred CeEEEEEccCCcchhhhhHHHHhhhcceeEEEEechHHH-HHHH-----------H-hCCeeEEeeeEEecCCCEeehhh
Confidence 4678999999886543 4666677788888877664432 3331 1 36677777654322 34
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
-..+..+-+.. +.|+++++..
T Consensus 199 t~~~a~~Ak~~---~vPv~v~~~~ 219 (282)
T PF01008_consen 199 TLQLALAAKEF---NVPVYVLAES 219 (282)
T ss_dssp HHHHHHHHHHT---T-EEEEE--G
T ss_pred HHHHHHHHHhh---CCCEEEEccc
Confidence 44444444443 8999999874
No 361
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=52.99 E-value=1.1e+02 Score=23.82 Aligned_cols=80 Identities=10% Similarity=-0.016 Sum_probs=46.3
Q ss_pred EeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHHHHHhhcCC
Q 046192 14 VDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIKESASL 91 (187)
Q Consensus 14 vd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~~~~~~ 91 (187)
.+........+...|...|..+....+.......+....+ -|++| =+..++ .+-.+.++..++.
T Consensus 136 ~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~----------~Dv~I-~iS~sg~~~~~~~~~~~ak~~--- 201 (278)
T PRK11557 136 IGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSP----------DDLLL-AISYSGERRELNLAADEALRV--- 201 (278)
T ss_pred cChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCC----------CCEEE-EEcCCCCCHHHHHHHHHHHHc---
Confidence 3444455667777777778777666565554444433332 24433 233344 3345667766664
Q ss_pred CCCcEEEEeCCCChhHH
Q 046192 92 KDIPVVIMSSENIPSRI 108 (187)
Q Consensus 92 ~~~~iI~ls~~~~~~~~ 108 (187)
+.+||.+|+.......
T Consensus 202 -ga~iI~IT~~~~s~la 217 (278)
T PRK11557 202 -GAKVLAITGFTPNALQ 217 (278)
T ss_pred -CCCEEEEcCCCCCchH
Confidence 7899999997554433
No 362
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=52.93 E-value=1e+02 Score=23.72 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=49.5
Q ss_pred CCHHHHHHHHhccCcccccccccccccEEEEeccCCC---CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhC
Q 046192 39 DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG---MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEG 115 (187)
Q Consensus 39 ~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~---~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~g 115 (187)
.+..+..+.+..... -.+.++|+.-.+ ..-+++++.+++.. .+|+++-..-.+.+.+.+++..|
T Consensus 30 ~dp~~~a~~~~~~G~----------~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~---~~pv~~~GGi~s~~d~~~~~~~G 96 (254)
T TIGR00735 30 GDPVELAQRYDEEGA----------DELVFLDITASSEGRTTMIDVVERTAETV---FIPLTVGGGIKSIEDVDKLLRAG 96 (254)
T ss_pred CCHHHHHHHHHHcCC----------CEEEEEcCCcccccChhhHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcC
Confidence 356666666643221 128888987553 23456677777753 68999998989999999999999
Q ss_pred CCceee
Q 046192 116 AEEFFL 121 (187)
Q Consensus 116 a~~yl~ 121 (187)
++..+.
T Consensus 97 a~~viv 102 (254)
T TIGR00735 97 ADKVSI 102 (254)
T ss_pred CCEEEE
Confidence 987764
No 363
>PRK07109 short chain dehydrogenase; Provisional
Probab=52.68 E-value=1.2e+02 Score=24.34 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=32.4
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHH
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKAL 45 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~ 45 (187)
|+|......+|+|.....-+...+...|.+.|+.|..+....+.+
T Consensus 1 ~~~~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l 45 (334)
T PRK07109 1 MMLKPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGL 45 (334)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 544444556889999988888899888888898887654333333
No 364
>PRK06849 hypothetical protein; Provisional
Probab=52.55 E-value=1.3e+02 Score=24.69 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=30.0
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNK 43 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~ 43 (187)
.+.+|||.+...-..-.+.+.|.+.|+.|+.+.+...
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3579999999988778888999989999988755443
No 365
>PRK06139 short chain dehydrogenase; Provisional
Probab=52.53 E-value=1.2e+02 Score=24.35 Aligned_cols=42 Identities=10% Similarity=-0.027 Sum_probs=31.1
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALE 46 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~ 46 (187)
.....+++|.....-+...+...|.+.|+.|+.+....+.++
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~ 45 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQ 45 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 344568899999888888899988888998887544444433
No 366
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=52.48 E-value=59 Score=26.71 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=47.3
Q ss_pred ccEEEEeccCCCC-CHHHHHHHHHhhcCCCCCcEEEE-eCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 64 VNLIITDYCMPGM-TGYDLLRKIKESASLKDIPVVIM-SSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 64 ~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~~~iI~l-s~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.+.++++..-+.. .-=.++..+... ...++.. .+..+...+...++.|+++.+++|-++.++......+-.
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~~~----~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQGS----STKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhcCC----CceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 4567777654443 332355554432 4455543 444566777888899999999999999999888766655
No 367
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=52.43 E-value=86 Score=22.60 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 75 GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 75 ~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
+.++-++++.+-.........|.++|+ |......++..||. .++.++|..-+........
T Consensus 76 ~~tAD~~Ie~~v~~~~~~~~~v~VVTS--D~~iq~~~~~~GA~-----~iss~ef~~~l~~~~~~~~ 135 (166)
T PF05991_consen 76 GETADDYIERLVRELKNRPRQVTVVTS--DREIQRAARGRGAK-----RISSEEFLRELKAAKREIR 135 (166)
T ss_pred CCCHHHHHHHHHHHhccCCCeEEEEeC--CHHHHHHHhhCCCE-----EEcHHHHHHHHHHHHHHHH
Confidence 456667777766555422467888887 57777777877865 5678888877777766544
No 368
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=52.10 E-value=1.1e+02 Score=23.58 Aligned_cols=57 Identities=23% Similarity=0.199 Sum_probs=45.1
Q ss_pred ccccEEEEeccCCCC--CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 62 IQVNLIITDYCMPGM--TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 62 ~~~dlvi~d~~~~~~--~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
.-.|.+.+|...++. -.++.++.+++..+ .+|||...+-.+.+.+.+.+..||++.-
T Consensus 160 aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~--~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 160 DGFDGIHVDAMYPGKPYADMDLLKILSEEFN--DKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred cCCCEEEEeeCCCCCchhhHHHHHHHHHhcC--CCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 346788888766664 35788899988653 5899999888899999999999999764
No 369
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=52.08 E-value=1e+02 Score=23.45 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHhhcCC--CCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 74 PGMTGYDLLRKIKESASL--KDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 74 ~~~~g~~~~~~l~~~~~~--~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
.+.+|+.+++.+.+.... .++ -|+.++..+...+.+++..|++.+-.-|
T Consensus 138 ~g~dg~~~i~~~~~~~~~~~~~t-kILaAS~r~~~~v~~~~~~G~d~vTip~ 188 (220)
T PRK12655 138 QGGDGIRMVQELQTLLEMHAPES-MVLAASFKTPRQALDCLLAGCQSITLPL 188 (220)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCc-EEEEEecCCHHHHHHHHHcCCCEEECCH
Confidence 467899988887664421 134 4445566678888889999998665543
No 370
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=52.05 E-value=1e+02 Score=23.32 Aligned_cols=88 Identities=8% Similarity=-0.005 Sum_probs=50.9
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCC-H-HHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDS-G-NKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~-~-~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
|.|+..+..+++|.....-....+...|.+.|+.|..+.. . .+..+.+... ..++..+..++.+.+.
T Consensus 1 ~~~~~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~ 69 (251)
T PRK12481 1 MQLFDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEAL-----------GRKFHFITADLIQQKD 69 (251)
T ss_pred CCCcccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHc-----------CCeEEEEEeCCCCHHH
Confidence 4444445568899999999999999999889998876532 2 2222333211 1124344444444433
Q ss_pred H-HHHHHHHhhcCCCCCcEEEEeC
Q 046192 79 Y-DLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 79 ~-~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
+ .+++.+.+... .+-+++...
T Consensus 70 ~~~~~~~~~~~~g--~iD~lv~~a 91 (251)
T PRK12481 70 IDSIVSQAVEVMG--HIDILINNA 91 (251)
T ss_pred HHHHHHHHHHHcC--CCCEEEECC
Confidence 3 45666555433 455666543
No 371
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=52.04 E-value=1.1e+02 Score=23.48 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHhhcCC--CCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 74 PGMTGYDLLRKIKESASL--KDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 74 ~~~~g~~~~~~l~~~~~~--~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
.+.||.++++.+...... .++ -|+.++..+...+.++...|++..-.-|
T Consensus 140 ~g~D~~~~i~~i~~~~~~~~~~t-kILaAS~r~~~~v~~a~~~G~d~vTvp~ 190 (222)
T PRK12656 140 LNIDSNAVIGQLAEAIDRENSDS-KILAASFKNVAQVNKAFALGAQAVTAGP 190 (222)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCC-EEEEEecCCHHHHHHHHHcCCCEEecCH
Confidence 457888877765543311 134 4456666789999999999998665544
No 372
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=52.00 E-value=97 Score=23.05 Aligned_cols=32 Identities=19% Similarity=0.045 Sum_probs=26.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
..+|+|.+........+...|...|+.|..+.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~ 37 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVD 37 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 45789999888888888888887898887654
No 373
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.90 E-value=1.4e+02 Score=25.03 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=56.9
Q ss_pred ceEEEEEeCCHHH---HHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 8 QFHVLAVDDSIID---RKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 8 ~~~ilivd~~~~~---~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
..+|.+++-|+.. .+.+..+-+..++.+..+.+..+....+...+. ...+|+||+|.---....-+.+..
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~-------~~~~D~VLIDTAGr~~~d~~~l~E 306 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY-------VNCVDHILIDTVGRNYLAEESVSE 306 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh-------cCCCCEEEEECCCCCccCHHHHHH
Confidence 3578888888753 334555555566666666777776665533211 124789999985332222334444
Q ss_pred HHhhcC--CCCCcEEEEeCCCChhHHHHHH----HhCCCcee-eC
Q 046192 85 IKESAS--LKDIPVVIMSSENIPSRINRCL----EEGAEEFF-LK 122 (187)
Q Consensus 85 l~~~~~--~~~~~iI~ls~~~~~~~~~~a~----~~ga~~yl-~k 122 (187)
++.... .++..++++++..........+ ..+.++++ +|
T Consensus 307 L~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TK 351 (407)
T PRK12726 307 ISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITK 351 (407)
T ss_pred HHHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEc
Confidence 433211 1133345555544444444443 24566665 44
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=51.40 E-value=1.2e+02 Score=23.85 Aligned_cols=106 Identities=11% Similarity=0.150 Sum_probs=50.7
Q ss_pred ceEEEEEeCCHHHH---HHHHHHHHhCCceEEEeCC---HHH-HHHHHhccCcccccccccccccEEEEeccCCCCCHHH
Q 046192 8 QFHVLAVDDSIIDR---KLIERLLKTSSYQVTAVDS---GNK-ALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYD 80 (187)
Q Consensus 8 ~~~ilivd~~~~~~---~~l~~~l~~~~~~v~~~~~---~~~-a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~ 80 (187)
..+|++++-|+... +.+..+.+..|..+..... ... ....+... ....+|+||+|.---...-..
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~--------~~~~~D~ViIDT~G~~~~d~~ 171 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA--------KARNIDVVLIDTAGRLQNKVN 171 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH--------HHCCCCEEEEeCCCCCcchHH
Confidence 46899999886322 3445555566655543322 211 12222111 223588999998533322223
Q ss_pred HHHHHHh---hcC-----CCCCcEEEEeCCCChhHHHHHH----HhCCCceee
Q 046192 81 LLRKIKE---SAS-----LKDIPVVIMSSENIPSRINRCL----EEGAEEFFL 121 (187)
Q Consensus 81 ~~~~l~~---~~~-----~~~~~iI~ls~~~~~~~~~~a~----~~ga~~yl~ 121 (187)
+++.+++ ... .++-.++++.+....+....+. ..+.++.+.
T Consensus 172 ~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 172 LMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred HHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEE
Confidence 3333322 110 0245567777655443333222 245666643
No 375
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=51.40 E-value=71 Score=27.15 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=39.4
Q ss_pred cccEEEEeccCCCC-CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHH-hCCCceeeCCC
Q 046192 63 QVNLIITDYCMPGM-TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLE-EGAEEFFLKPV 124 (187)
Q Consensus 63 ~~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~-~ga~~yl~kP~ 124 (187)
.||+|.+....+.. ...++++.+|+..| +++||+-..+... ...+++. ...-||+...-
T Consensus 68 ~~Dlv~is~~t~~~~~~~~ia~~iK~~~p--~~~vv~GG~h~t~-~pe~~l~~~~~vD~Vv~GE 128 (472)
T TIGR03471 68 DYDLVVLHTSTPSFPSDVKTAEALKEQNP--ATKIGFVGAHVAV-LPEKTLKQGPAIDFVCRRE 128 (472)
T ss_pred CCCEEEEECCCcchHHHHHHHHHHHHhCC--CCEEEEECCCccc-CHHHHHhcCCCeeEEEeCc
Confidence 36799998877764 57889999999876 7777655544322 2334444 34567888763
No 376
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=51.30 E-value=97 Score=24.02 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=48.3
Q ss_pred eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC---HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHh
Q 046192 38 VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT---GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEE 114 (187)
Q Consensus 38 ~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~---g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ 114 (187)
+.+.-++.+.....-.|| ++++|+.-.... -++++++..+.- .+|+-+=..-.+.+.+.+.+++
T Consensus 29 ~GDpVelA~~Y~e~GADE----------lvFlDItAs~~gr~~~~~vv~r~A~~v---fiPltVGGGI~s~eD~~~ll~a 95 (256)
T COG0107 29 AGDPVELAKRYNEEGADE----------LVFLDITASSEGRETMLDVVERVAEQV---FIPLTVGGGIRSVEDARKLLRA 95 (256)
T ss_pred cCChHHHHHHHHHcCCCe----------EEEEecccccccchhHHHHHHHHHhhc---eeeeEecCCcCCHHHHHHHHHc
Confidence 556667766665555543 999999776433 455555555432 6777766666788999999999
Q ss_pred CCCce
Q 046192 115 GAEEF 119 (187)
Q Consensus 115 ga~~y 119 (187)
|||-.
T Consensus 96 GADKV 100 (256)
T COG0107 96 GADKV 100 (256)
T ss_pred CCCee
Confidence 99965
No 377
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=51.25 E-value=1e+02 Score=23.14 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=39.1
Q ss_pred EEEEeccCCC---CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 66 LIITDYCMPG---MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 66 lvi~d~~~~~---~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+++.+....+ ...+++++.+++.. .+|++.-..-.+.+.+.+++..|+++.+.
T Consensus 163 iii~~~~~~g~~~g~~~~~i~~i~~~~---~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 163 IIYTDISRDGTLSGPNFELYKELAAAT---GIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred EEEEeecCCCccCCCCHHHHHHHHHhc---CCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 5666664332 12357788887754 68999888888888899999999998754
No 378
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=50.90 E-value=1.3e+02 Score=24.11 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=50.1
Q ss_pred CceEEEEEeCCHHHH-HHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccC--CCC-----CH
Q 046192 7 SQFHVLAVDDSIIDR-KLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM--PGM-----TG 78 (187)
Q Consensus 7 ~~~~ilivd~~~~~~-~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~--~~~-----~g 78 (187)
.+++|.+.|..|... ..+...|.+.|+.++...+..-+. .+. .+|.|++..+. .++ -|
T Consensus 140 ~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~-~m~-------------~vd~VivGad~v~~nG~v~nkiG 205 (301)
T TIGR00511 140 KDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRY-FMK-------------EVDHVVVGADAITANGALINKIG 205 (301)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHH-HHH-------------hCCEEEECccEEecCCCEEEHHh
Confidence 468899999988754 456777888898888776543332 231 25677775533 322 34
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
--.+..+-+.. ++|+++++..
T Consensus 206 T~~lA~~Ak~~---~vPv~V~a~~ 226 (301)
T TIGR00511 206 TSQLALAAREA---RVPFMVAAET 226 (301)
T ss_pred HHHHHHHHHHh---CCCEEEEccc
Confidence 44455554443 7999998764
No 379
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=50.79 E-value=1.3e+02 Score=24.17 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=62.1
Q ss_pred ceEEEEEeCCHH-------HHHHHHHHHHh-CCc--eEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC
Q 046192 8 QFHVLAVDDSII-------DRKLIERLLKT-SSY--QVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG 75 (187)
Q Consensus 8 ~~~ilivd~~~~-------~~~~l~~~l~~-~~~--~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~ 75 (187)
..+++++++.+. ....+....++ .+. .|.. .-+..+....+. ..|++++-... .
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~-------------~ad~~l~~s~~-E 310 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLS-------------SARALLYTPSN-E 310 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHh-------------hCeEEEECCCc-C
Confidence 567777776432 23556666655 432 2333 333444444442 24577764332 3
Q ss_pred CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 76 MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 76 ~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.-|..+++.+.. .+|+|........ +.+..|..+|+..| +.+++.+.+..++..
T Consensus 311 ~~g~~~lEAma~-----G~PvI~s~~~~~~----e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~ 364 (392)
T cd03805 311 HFGIVPLEAMYA-----GKPVIACNSGGPL----ETVVDGETGFLCEP-TPEEFAEAMLKLAND 364 (392)
T ss_pred CCCchHHHHHHc-----CCCEEEECCCCcH----HHhccCCceEEeCC-CHHHHHHHHHHHHhC
Confidence 345566666553 7889865433322 33455677888876 899999888887754
No 380
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=50.69 E-value=1.1e+02 Score=23.18 Aligned_cols=84 Identities=5% Similarity=0.006 Sum_probs=49.6
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHH---HHHHHHhccCcccccccccccccEEEEeccCCCCCHH-H
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGN---KALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-D 80 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~---~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~ 80 (187)
.....++||.+...-....+.+.|.+.|+.|..+.... ++.+.+... . .++..+..++.+.+.+ .
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~D~~~~~~i~~ 80 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE---------G--RKVTFVQVDLTKPESAEK 80 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc---------C--CceEEEEcCCCCHHHHHH
Confidence 33456899999999999999999988898877643222 222222111 1 1233444444444433 3
Q ss_pred HHHHHHhhcCCCCCcEEEEeC
Q 046192 81 LLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~ 101 (187)
+++.+.+..+ .+.+++...
T Consensus 81 ~~~~~~~~~g--~id~li~~a 99 (258)
T PRK06935 81 VVKEALEEFG--KIDILVNNA 99 (258)
T ss_pred HHHHHHHHcC--CCCEEEECC
Confidence 6666666543 566666544
No 381
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=50.64 E-value=1e+02 Score=22.86 Aligned_cols=102 Identities=24% Similarity=0.289 Sum_probs=49.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CC------------c-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccC-
Q 046192 10 HVLAVDDSIIDRKLIERLLKT--SS------------Y-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM- 73 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~--~~------------~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~- 73 (187)
+-.||..-+..++...+++.- .| + .+..+++.+++++.+... ....|-+|..+...
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~--------~G~~P~~v~TsAr~~ 115 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEE--------EGKRPLLVATSARKY 115 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHH--------HSS--EEEE--SS--
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHH--------hCCCCEEEEecCcCC
Confidence 446777777777777777742 11 2 255689999999988653 33467799999983
Q ss_pred CCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCC
Q 046192 74 PGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ 125 (187)
Q Consensus 74 ~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~ 125 (187)
++.-.+.-+++.-... +-|++++-.-. -....+.+ ...||++.|+.
T Consensus 116 ~~~is~~~lr~~l~~~---~~P~LllFGTG-wGL~~ev~--~~~D~iLePI~ 161 (185)
T PF09936_consen 116 PNTISYAELRRMLEEE---DRPVLLLFGTG-WGLAPEVM--EQCDYILEPIR 161 (185)
T ss_dssp SS-B-HHHHHHHHHH-----S-EEEEE--T-T---HHHH--TT-SEEB--TT
T ss_pred CCCcCHHHHHHHHhcc---CCeEEEEecCC-CCCCHHHH--HhcCeeEcccc
Confidence 4444555444433222 55666664421 22333333 34579999985
No 382
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.50 E-value=1.1e+02 Score=23.17 Aligned_cols=80 Identities=10% Similarity=0.184 Sum_probs=55.2
Q ss_pred HHHHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCC-CCCHHHHHHHHHhhcCCCCCcEEEE
Q 046192 22 KLIERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GMTGYDLLRKIKESASLKDIPVVIM 99 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l~~~~~~~~~~iI~l 99 (187)
..+.+...+.|.-+. .+.+..|+.+.+. ..+|+|=+ .| +.-|.+.++.++...+ ++|++.+
T Consensus 99 ~~v~~~~~~~~i~~iPG~~T~~E~~~A~~------------~Gad~vkl---FPa~~~G~~~ik~l~~~~p--~ip~~at 161 (213)
T PRK06552 99 RETAKICNLYQIPYLPGCMTVTEIVTALE------------AGSEIVKL---FPGSTLGPSFIKAIKGPLP--QVNVMVT 161 (213)
T ss_pred HHHHHHHHHcCCCEECCcCCHHHHHHHHH------------cCCCEEEE---CCcccCCHHHHHHHhhhCC--CCEEEEE
Confidence 344445555665444 3778888877763 23556665 33 3457899999988765 8998855
Q ss_pred eCCCChhHHHHHHHhCCCce
Q 046192 100 SSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 100 s~~~~~~~~~~a~~~ga~~y 119 (187)
.. -+.+.+.+.+..|++.+
T Consensus 162 GG-I~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 162 GG-VNLDNVKDWFAAGADAV 180 (213)
T ss_pred CC-CCHHHHHHHHHCCCcEE
Confidence 55 57899999999998865
No 383
>PRK11059 regulatory protein CsrD; Provisional
Probab=50.39 E-value=1.1e+02 Score=27.17 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCC-----CCCHHHHHHHHHhhcCCC
Q 046192 20 DRKLIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-----GMTGYDLLRKIKESASLK 92 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-----~~~g~~~~~~l~~~~~~~ 92 (187)
....+-..|++.|+.+.. +..+...+..+... ++|.|=+|-..- +.....+++.+.......
T Consensus 534 ~~~~~l~~L~~~G~~iaiddfG~g~~s~~~L~~l-----------~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~ 602 (640)
T PRK11059 534 RLRPVLRMLRGLGCRLAVDQAGLTVVSTSYIKEL-----------NVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGT 602 (640)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCcccHHHHHhC-----------CCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHC
Confidence 344555666778987776 66777777888443 566888886432 122333455444433212
Q ss_pred CCcEEEEeCCCChhHHHHHHHhCCCc----eeeCCCC
Q 046192 93 DIPVVIMSSENIPSRINRCLEEGAEE----FFLKPVQ 125 (187)
Q Consensus 93 ~~~iI~ls~~~~~~~~~~a~~~ga~~----yl~kP~~ 125 (187)
++.+| ...-.+.+....+.+.|++. |+.||..
T Consensus 603 ~i~vi-AegVEt~~~~~~l~~lGvd~~QG~~~~~P~~ 638 (640)
T PRK11059 603 ETQVF-ATGVESREEWQTLQELGVSGGQGDFFAESQP 638 (640)
T ss_pred CCeEE-EEEeCCHHHHHHHHHhCCCeeecCccCCCcC
Confidence 45555 44556788888888999863 5777754
No 384
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=50.24 E-value=52 Score=25.86 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEe
Q 046192 20 DRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITD 70 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d 70 (187)
....+.+.|++.|+.+.......+.+..+.. ..+|+|+.-
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~-----------~~~D~v~~~ 63 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKE-----------LGFDRVFNA 63 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhcc-----------CCCCEEEEe
Confidence 5567888888899999887666666666632 346688864
No 385
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=49.90 E-value=71 Score=29.49 Aligned_cols=74 Identities=14% Similarity=0.300 Sum_probs=47.7
Q ss_pred ccccEEEEe-ccCCCCCHHH-HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 62 IQVNLIITD-YCMPGMTGYD-LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 62 ~~~dlvi~d-~~~~~~~g~~-~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
..+.++|+| .++-...+.+ |++.|.+ .+ .++.+|+++.. .+.+...++.-..-|-.++++.+++...+..+++.
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEE-pP-~~~~fIl~tt~--~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEE-PP-EHLKFIFATTE--PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhC-CC-CCeEEEEEeCC--hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 356788888 3444445555 4555544 32 36667777743 33455566666777888888999998888777643
No 386
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.87 E-value=1.1e+02 Score=24.27 Aligned_cols=55 Identities=9% Similarity=0.208 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
.+.++.+|+..+. ..+|.+=.. +.+.+.+|.+.|+|-.++-.++++++.+++..+
T Consensus 181 ~~ai~~~r~~~~~-~~kIeVEv~--tleea~ea~~~gaDiI~LDn~s~e~l~~av~~~ 235 (281)
T PRK06106 181 REAIRRARAGVGH-LVKIEVEVD--TLDQLEEALELGVDAVLLDNMTPDTLREAVAIV 235 (281)
T ss_pred HHHHHHHHHhCCC-CCcEEEEeC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHh
Confidence 3577777776642 355655554 688999999999999999999999999998855
No 387
>PRK07062 short chain dehydrogenase; Provisional
Probab=49.65 E-value=1.1e+02 Score=23.13 Aligned_cols=33 Identities=12% Similarity=-0.093 Sum_probs=27.0
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
...+++|.....-....+...|.+.|+.|..+.
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~ 39 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICG 39 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEe
Confidence 346789999998888899999988898887654
No 388
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.57 E-value=92 Score=24.66 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=38.8
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
..++..|+..+ ..+ |.+.. .+.+.+.+|.+.|+|....-+++++++.++++.+
T Consensus 178 ~av~~~r~~~~--~~~-I~VEv-~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~ 230 (277)
T PRK05742 178 QAVAAAHRIAP--GKP-VEVEV-ESLDELRQALAAGADIVMLDELSLDDMREAVRLT 230 (277)
T ss_pred HHHHHHHHhCC--CCe-EEEEe-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 34566676543 444 43444 3588899999999998889999999998887654
No 389
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=49.56 E-value=1.2e+02 Score=23.48 Aligned_cols=57 Identities=16% Similarity=0.301 Sum_probs=42.0
Q ss_pred EEEEeccCCC-CC--HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHH-HhCCCcee-eCCCC
Q 046192 66 LIITDYCMPG-MT--GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCL-EEGAEEFF-LKPVQ 125 (187)
Q Consensus 66 lvi~d~~~~~-~~--g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~-~~ga~~yl-~kP~~ 125 (187)
+++.|+.-.+ .. -+++++.+++.. .+|+|.-..-.+.+.+.+++ ..|+++.+ .+.+.
T Consensus 169 ii~~~i~~~G~~~G~d~~~i~~~~~~~---~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~ 230 (258)
T PRK01033 169 ILLNSIDRDGTMKGYDLELLKSFRNAL---KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFV 230 (258)
T ss_pred EEEEccCCCCCcCCCCHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceee
Confidence 7888776543 22 356778887753 79999999999999999998 79998764 34443
No 390
>PRK12829 short chain dehydrogenase; Provisional
Probab=49.56 E-value=1.1e+02 Score=23.02 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=31.1
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEF 47 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~ 47 (187)
+..++||.+...-....+...|.+.|+.|..+....+..+.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~ 50 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAA 50 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 44789999999999999999998889888775443333333
No 391
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=49.41 E-value=1.3e+02 Score=23.59 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCC-CCC-HHHHHHHHHhhcCCCCCcEEE
Q 046192 22 KLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GMT-GYDLLRKIKESASLKDIPVVI 98 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~-g~~~~~~l~~~~~~~~~~iI~ 98 (187)
..+...-...|.++.. +.+.+++-..+.. ..+++-++-.-- ... -.+....+....| .+..+|.
T Consensus 148 ~~l~~~a~~lGle~lVEVh~~~El~~al~~------------~a~iiGINnRdL~tf~vd~~~~~~l~~~ip-~~~~~is 214 (254)
T PF00218_consen 148 EELLELAHSLGLEALVEVHNEEELERALEA------------GADIIGINNRDLKTFEVDLNRTEELAPLIP-KDVIVIS 214 (254)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHT------------T-SEEEEESBCTTTCCBHTHHHHHHHCHSH-TTSEEEE
T ss_pred HHHHHHHHHcCCCeEEEECCHHHHHHHHHc------------CCCEEEEeCccccCcccChHHHHHHHhhCc-cceeEEe
Confidence 4455555668987765 8999888776632 244766665433 322 3455556665554 2455666
Q ss_pred EeCCCChhHHHHHHHhCCCceeeC
Q 046192 99 MSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 99 ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
-++-.+.+.+......|+++++.-
T Consensus 215 eSGI~~~~d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 215 ESGIKTPEDARRLARAGADAVLVG 238 (254)
T ss_dssp ESS-SSHHHHHHHCTTT-SEEEES
T ss_pred ecCCCCHHHHHHHHHCCCCEEEEC
Confidence 666678899999999999999874
No 392
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=49.34 E-value=1.1e+02 Score=23.00 Aligned_cols=34 Identities=12% Similarity=-0.065 Sum_probs=27.9
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDS 40 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~ 40 (187)
...++||.+...-....+...|.+.|+.|.....
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r 42 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGR 42 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeC
Confidence 3468999999999999999988888998887543
No 393
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=49.34 E-value=41 Score=24.00 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=27.8
Q ss_pred ccccEEEEeccCCCCC-HH-------HHHHHHHhhcCCCCCcEEEEeCCC
Q 046192 62 IQVNLIITDYCMPGMT-GY-------DLLRKIKESASLKDIPVVIMSSEN 103 (187)
Q Consensus 62 ~~~dlvi~d~~~~~~~-g~-------~~~~~l~~~~~~~~~~iI~ls~~~ 103 (187)
..||+|++.+-..+.. +. .+++.+++..| ..||++++...
T Consensus 56 ~~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~p--~~~iil~~~~~ 103 (177)
T cd01844 56 VPADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHP--DTPILLVSPRY 103 (177)
T ss_pred cCCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHCc--CCCEEEEecCC
Confidence 3577999988666543 22 45677788776 88999888643
No 394
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=49.32 E-value=78 Score=21.16 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=44.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---C---CceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 10 HVLAVDDSIIDRKLIERLLKT---S---SYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~---~---~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
-+.+|+||+.++..|++--.+ . |+ |+.+.+ .++++.+...-| ++.+--.+|-++.+
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~AvGl-VVnV~t-~~~l~~Lr~lap----------------gl~l~P~sgddLa~ 87 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGAVGL-VVNVET-AAALQRLRALAP----------------GLPLLPVSGDDLAE 87 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCCeEE-EEecCC-HHHHHHHHHHcC----------------CCcccCCCHHHHHH
Confidence 468999999999999876543 3 33 333444 445555544333 34455678989999
Q ss_pred HHHhhcCCCCCcEEEEeC
Q 046192 84 KIKESASLKDIPVVIMSS 101 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~ 101 (187)
++.-. +-|+++...
T Consensus 88 rL~l~----hYPvLit~t 101 (105)
T TIGR03765 88 RLGLR----HYPVLITAT 101 (105)
T ss_pred HhCCC----cccEEEecC
Confidence 98543 668886543
No 395
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=49.31 E-value=1.3e+02 Score=26.11 Aligned_cols=56 Identities=18% Similarity=0.093 Sum_probs=37.8
Q ss_pred cccEEEEeccCCCCC--HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMT--GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~--g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|++.+| ..++.+ -.+.++++++..+ ..-.|....-.+.+.+..++.+||+....
T Consensus 254 Gvd~i~vd-~a~g~~~~~~~~i~~ir~~~~--~~~~V~aGnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 254 GADVLCID-SSEGYSEWQKRTLDWIREKYG--DSVKVGAGNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred CCCeEeec-CcccccHHHHHHHHHHHHhCC--CCceEEeccccCHHHHHHHHHcCCCEEEE
Confidence 48899999 444443 3678889998754 21223344445678888999999987533
No 396
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=49.18 E-value=95 Score=22.12 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..++++.+++. +.++.+.+.. +.+....++..|+++.++
T Consensus 149 ~~~~i~~~~~~----g~~v~~wtvn-~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 149 TPELVRAAHAA----GLKVYVWTVN-DPEDARRLLALGVDGIIT 187 (189)
T ss_pred CHHHHHHHHHc----CCEEEEEcCC-CHHHHHHHHHCCCCEEec
Confidence 35677777774 6788888764 678888889999988764
No 397
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.06 E-value=1.3e+02 Score=23.74 Aligned_cols=95 Identities=9% Similarity=0.150 Sum_probs=56.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCc--eEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 10 HVLAVDDSIIDRKLIERLLKT----SSY--QVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~----~~~--~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
.|+|-|+|..+...+...+++ .++ .+. .+.+.+++.+.+.. .+|+|.+|-.-| .+--+.+
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~------------GaDiI~LDn~~~-e~l~~~v 220 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA------------GADIVMCDNMSV-EEIKEVV 220 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc------------CCCEEEECCCCH-HHHHHHH
Confidence 466777776666556665542 332 343 38899999988842 367999875311 1111222
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
+.++...+ ++ .+..+..-+.+.+.+....|+|.+.
T Consensus 221 ~~~~~~~~--~~-~ieAsGgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 221 AYRNANYP--HV-LLEASGNITLENINAYAKSGVDAIS 255 (273)
T ss_pred HHhhccCC--Ce-EEEEECCCCHHHHHHHHHcCCCEEE
Confidence 22222222 33 4556666789999999999998653
No 398
>PRK13695 putative NTPase; Provisional
Probab=48.79 E-value=97 Score=22.10 Aligned_cols=73 Identities=11% Similarity=0.116 Sum_probs=37.1
Q ss_pred cccEEEEeccCCC-CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCc--eeeCCCChHHHHHHHHHH
Q 046192 63 QVNLIITDYCMPG-MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEE--FFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 63 ~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~--yl~kP~~~~~l~~~i~~~ 136 (187)
.++++++|--.+. .-+..+.+.+..... ...|+|+++...........+..-.+. |-..|-+-+++...+...
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~-~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLD-SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHh-CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 4779999963221 112334455544432 367888777754333333333332333 334566666665555443
No 399
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=48.67 E-value=32 Score=19.96 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHhh--cCCCCCcEEEEeCC
Q 046192 75 GMTGYDLLRKIKES--ASLKDIPVVIMSSE 102 (187)
Q Consensus 75 ~~~g~~~~~~l~~~--~~~~~~~iI~ls~~ 102 (187)
..+|.++++++.+. ......|||+.+.-
T Consensus 3 ~~sGv~vlRel~r~~~~~~~~~PVVFTS~L 32 (58)
T PF08415_consen 3 SFSGVEVLRELARRGGGRAAVMPVVFTSML 32 (58)
T ss_pred cccHHHHHHHHHHhcCCCCCcCCEEEeCCC
Confidence 35799999999777 23346799876654
No 400
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=48.65 E-value=1.6e+02 Score=24.57 Aligned_cols=55 Identities=7% Similarity=-0.035 Sum_probs=28.0
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHH---HHhCCCcee
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRC---LEEGAEEFF 120 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a---~~~ga~~yl 120 (187)
.+|.+++-..-... ...++...++..+ ...+|+.+........... .+.|++..+
T Consensus 65 ~a~~vi~~~~~~~~-n~~~~~~~r~~~~--~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi 122 (453)
T PRK09496 65 DADLLIAVTDSDET-NMVACQIAKSLFG--APTTIARVRNPEYAEYDKLFSKEALGIDLLI 122 (453)
T ss_pred cCCEEEEecCChHH-HHHHHHHHHHhcC--CCeEEEEECCccccchhhhhhhhcCCccEEE
Confidence 56777776543222 2334555666544 6667766544332122222 356877443
No 401
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=48.53 E-value=1.3e+02 Score=23.56 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=58.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC---------H
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT---------G 78 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~---------g 78 (187)
++|.|-.......+...+++.|..... -++..+-++.+.....+ .|.+=. .++.. -
T Consensus 123 viipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~g-----------FIY~vS-~~GvTG~~~~~~~~~ 190 (263)
T CHL00200 123 LIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPG-----------CIYLVS-TTGVTGLKTELDKKL 190 (263)
T ss_pred EEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCC-----------cEEEEc-CCCCCCCCccccHHH
Confidence 344444444555666777777754443 23445666665433222 333211 33322 2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
.++++++|+.. +.|+.+=-.-++.+.+.++...|||+.+.-.
T Consensus 191 ~~~i~~ir~~t---~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMT---NKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 35677777743 7888874445568889999999999998764
No 402
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=48.53 E-value=1.5e+02 Score=24.22 Aligned_cols=105 Identities=16% Similarity=0.242 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcE
Q 046192 17 SIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 17 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 96 (187)
+..+...|....+..|..+...+-...+...+...+|. ..-+-.+..+-+.+++.+.+. +-|+
T Consensus 88 p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~-------------ayKIaS~E~~~~plik~iA~~----~kPi 150 (347)
T COG2089 88 PLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPP-------------AYKIASGEINDLPLIKYIAKK----GKPI 150 (347)
T ss_pred CHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCC-------------eEEecCccccChHHHHHHHhc----CCCE
Confidence 34555667777777887777666667777887665543 334445566778899998875 4599
Q ss_pred EEEeCCCChhHHHHHH----HhCCCcee-eC-----CCChHHH-HHHHHHHhh
Q 046192 97 VIMSSENIPSRINRCL----EEGAEEFF-LK-----PVQLADV-NKLKPHLMK 138 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~----~~ga~~yl-~k-----P~~~~~l-~~~i~~~~~ 138 (187)
|+-|+..+.+.+.+|+ +.|.-+++ ++ |...++. +..+..+..
T Consensus 151 IlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~ 203 (347)
T COG2089 151 ILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAE 203 (347)
T ss_pred EEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHH
Confidence 9988888777776665 45666553 33 5555554 344444443
No 403
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=48.31 E-value=93 Score=27.33 Aligned_cols=81 Identities=20% Similarity=0.207 Sum_probs=56.9
Q ss_pred ccCcccccccccccccEEEEeccCCC--CCHHHHHHHHHhhcCCCCCcEEEEeCC-CChhHHHH----HHHhCCCceeeC
Q 046192 50 LLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIKESASLKDIPVVIMSSE-NIPSRINR----CLEEGAEEFFLK 122 (187)
Q Consensus 50 ~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~~~~~~~~~~iI~ls~~-~~~~~~~~----a~~~ga~~yl~k 122 (187)
...|+ ....|+.+++|--|-. ..|-.++++.|..+. .+.-+++++. .+.+.+.+ ....|......|
T Consensus 85 ~lepG-----~t~qfN~ifldpylw~~qig~krLv~kara~G~--~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fK 157 (717)
T COG4981 85 LLEPG-----RTAQFNSIFLDPYLWKLQIGGKRLVQKARASGA--PIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFK 157 (717)
T ss_pred ccCCC-----ccceeeEEEechHHhhhcCChHHHHHHHHhcCC--CcceEEEecCCCcHHHHHHHHHHHhhcCceeEEec
Confidence 34566 6668999999987764 568889999999875 5666666654 33444333 344477777899
Q ss_pred CCChHHHHHHHHHHh
Q 046192 123 PVQLADVNKLKPHLM 137 (187)
Q Consensus 123 P~~~~~l~~~i~~~~ 137 (187)
|-+.+++..+++-..
T Consensus 158 PGtIeqI~svi~IAk 172 (717)
T COG4981 158 PGTIEQIRSVIRIAK 172 (717)
T ss_pred CCcHHHHHHHHHHHh
Confidence 999988877775443
No 404
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=48.28 E-value=1.2e+02 Score=22.87 Aligned_cols=93 Identities=23% Similarity=0.313 Sum_probs=58.7
Q ss_pred eCCHHHHHHHHHHHHhC-CceEEE------eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CCHHHHHHHHH
Q 046192 15 DDSIIDRKLIERLLKTS-SYQVTA------VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MTGYDLLRKIK 86 (187)
Q Consensus 15 d~~~~~~~~l~~~l~~~-~~~v~~------~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~ 86 (187)
+|.......+.++++.. ++.++. +.+..++++.+.. ..++-|+..-.-+. .+|++.++.+.
T Consensus 96 ~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~-----------lG~~rVLTSGg~~~a~~g~~~L~~lv 164 (201)
T PF03932_consen 96 EDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIE-----------LGFDRVLTSGGAPTALEGIENLKELV 164 (201)
T ss_dssp TTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHH-----------HT-SEEEESTTSSSTTTCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHh-----------cCCCEEECCCCCCCHHHHHHHHHHHH
Confidence 45556667777777643 566654 4678888888843 35778888877654 68999998887
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHH-hCCCcee
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLE-EGAEEFF 120 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~-~ga~~yl 120 (187)
+... ...-|+..+.-..+.+....+ .|+..|-
T Consensus 165 ~~a~--~~i~Im~GgGv~~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 165 EQAK--GRIEIMPGGGVRAENVPELVEETGVREIH 197 (201)
T ss_dssp HHHT--TSSEEEEESS--TTTHHHHHHHHT-SEEE
T ss_pred HHcC--CCcEEEecCCCCHHHHHHHHHhhCCeEEe
Confidence 6653 323455565556666666665 7877764
No 405
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=48.13 E-value=74 Score=23.57 Aligned_cols=33 Identities=9% Similarity=0.222 Sum_probs=27.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSG 41 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~ 41 (187)
++|+|+|-.--....+.+.|+..|+.+....+.
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDP 33 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCH
Confidence 378999999888899999999999888877643
No 406
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=48.05 E-value=69 Score=22.77 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=29.1
Q ss_pred CceEEEEEeCCHHH---------HHHHHHHHHhCC-ceEEEeCCHHHHHHHHhc
Q 046192 7 SQFHVLAVDDSIID---------RKLIERLLKTSS-YQVTAVDSGNKALEFLGL 50 (187)
Q Consensus 7 ~~~~ilivd~~~~~---------~~~l~~~l~~~~-~~v~~~~~~~~a~~~l~~ 50 (187)
.++.|.|+|.|.-. ...+.+.|...+ +.+.. .+.+++.+.+..
T Consensus 42 ~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~ 94 (164)
T TIGR03061 42 DNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLAD 94 (164)
T ss_pred CCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHc
Confidence 46888999888764 455666665543 55443 488889888843
No 407
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=47.98 E-value=1.6e+02 Score=24.39 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=37.6
Q ss_pred ccccEEEEeccC-------CCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 62 IQVNLIITDYCM-------PGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 62 ~~~dlvi~d~~~-------~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..+|+|.++... +..+...+.+.+++. ++|||. ..-.+.+.+..+++.|||....
T Consensus 153 aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~----~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 153 AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL----DVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC----CCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 346799997542 112455666666652 688876 5666788899999999998744
No 408
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=47.75 E-value=1.2e+02 Score=22.83 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=48.6
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH-hccCcccccccccccccEEEEeccCCCCCH-HHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFL-GLLNEDEQTNSQVIQVNLIITDYCMPGMTG-YDLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l-~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g-~~~~~ 83 (187)
.+..+++|.+...-....+...|.+.|+.|..+....+.++.+ ...+. ....+..+.+|+ .+.+. ..+++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dl--~~~~~~~~~~~ 80 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA------AGGAAEALAFDI--ADEEAVAAAFA 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh------cCCceEEEEccC--CCHHHHHHHHH
Confidence 3457899999999999999999988898888754333322222 11110 111244555555 33332 34666
Q ss_pred HHHhhcCCCCCcEEEEe
Q 046192 84 KIKESASLKDIPVVIMS 100 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls 100 (187)
.+..... .+-+++..
T Consensus 81 ~~~~~~~--~id~vi~~ 95 (256)
T PRK06124 81 RIDAEHG--RLDILVNN 95 (256)
T ss_pred HHHHhcC--CCCEEEEC
Confidence 6665443 44455544
No 409
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=47.68 E-value=1.3e+02 Score=23.14 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=43.3
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.|++++-... ..-|..+++.+.. .+|+|...... ..+.+..|..+++..+.+.+++.+.+..+...
T Consensus 264 adi~i~ps~~-e~~~~~~~Ea~~~-----G~Pvi~s~~~~----~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 264 ADVFVLPSYR-EGLPRVLLEAMAM-----GRPVIATDVPG----CREAVIDGVNGFLVPPGDAEALADAIERLIED 329 (359)
T ss_pred ccEEEecCcc-cCcchHHHHHHHc-----CCCEEEecCCC----chhhhhcCcceEEECCCCHHHHHHHHHHHHhC
Confidence 4566654333 3446667777654 77888643322 23445557788999998999999999887654
No 410
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=47.61 E-value=1.2e+02 Score=22.97 Aligned_cols=58 Identities=29% Similarity=0.432 Sum_probs=36.6
Q ss_pred cccEEEEeccCCCCCH-------HHHHHHHHhhcCC--CCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMTG-------YDLLRKIKESASL--KDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g-------~~~~~~l~~~~~~--~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..|.|++=..-|+..| ++-++++++.... .+.||.+ ...-+.+.+....++||+.++.
T Consensus 128 ~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v-dGGI~~eni~~l~~aGAd~vVv 194 (220)
T PRK08883 128 KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI-DGGVKVDNIREIAEAGADMFVA 194 (220)
T ss_pred hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCCCEEEE
Confidence 3667777677777555 3445555554321 1355655 4445688999999999997643
No 411
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=47.60 E-value=1.2e+02 Score=22.71 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEecc------CCCCCHHHHHHHHHhhcCCCCC
Q 046192 22 KLIERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC------MPGMTGYDLLRKIKESASLKDI 94 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~------~~~~~g~~~~~~l~~~~~~~~~ 94 (187)
..+-..++..+..+. -+++.+++...... .+|+|=.-+. .+....+++++.+.+. ..
T Consensus 82 ~~li~~i~~~~~l~MADist~ee~~~A~~~------------G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~----~~ 145 (192)
T PF04131_consen 82 EELIREIKEKYQLVMADISTLEEAINAAEL------------GFDIIGTTLSGYTPYTKGDGPDFELVRELVQA----DV 145 (192)
T ss_dssp HHHHHHHHHCTSEEEEE-SSHHHHHHHHHT------------T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT----TS
T ss_pred HHHHHHHHHhCcEEeeecCCHHHHHHHHHc------------CCCEEEcccccCCCCCCCCCCCHHHHHHHHhC----CC
Confidence 344444455442222 37899999887632 3666654431 1123467899999874 67
Q ss_pred cEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 95 PVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 95 ~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
|+|.=....+++.+.++++.||+..+.
T Consensus 146 pvIaEGri~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 146 PVIAEGRIHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp EEEEESS--SHHHHHHHHHTT-SEEEE
T ss_pred cEeecCCCCCHHHHHHHHhcCCeEEEE
Confidence 888888888999999999999998765
No 412
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.59 E-value=1.4e+02 Score=23.71 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=52.3
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHh---CCceEEEe-----CCHHHHHHHHhccCcccccccccccccEEEEeccCC-CCC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKT---SSYQVTAV-----DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GMT 77 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~---~~~~v~~~-----~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~ 77 (187)
..+-++.++|++.+....+...+. .|+.+... .+.++.++.+...+.| ..+|-+++-.-+| +.+
T Consensus 32 P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D-------~~V~GIlvq~PlP~~i~ 104 (281)
T PRK14183 32 PGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNN-------PNIDGILVQLPLPKHID 104 (281)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC-------CccCeEEEeCCCCCCCC
Confidence 457789999999999888877754 57665442 2556788888776554 4578889888887 466
Q ss_pred HHHHHHHHHh
Q 046192 78 GYDLLRKIKE 87 (187)
Q Consensus 78 g~~~~~~l~~ 87 (187)
-..+++.|..
T Consensus 105 ~~~i~~~I~p 114 (281)
T PRK14183 105 TTKILEAIDP 114 (281)
T ss_pred HHHHHhccCc
Confidence 6666666544
No 413
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=47.34 E-value=1.4e+02 Score=23.43 Aligned_cols=88 Identities=16% Similarity=0.224 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEec-cCCCC-CHHHHHHHHHhhcCCCCCcEEE
Q 046192 22 KLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY-CMPGM-TGYDLLRKIKESASLKDIPVVI 98 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~-~~~~~-~g~~~~~~l~~~~~~~~~~iI~ 98 (187)
..+...-+..|.++.+ +.+.+++-..+. .. ..+|=++- ++... -.++....|....| .+..+|.
T Consensus 146 ~el~~~A~~LGm~~LVEVh~~eEl~rAl~-~g-----------a~iIGINnRdL~tf~vdl~~t~~la~~~p-~~~~~Is 212 (254)
T COG0134 146 EELVDRAHELGMEVLVEVHNEEELERALK-LG-----------AKIIGINNRDLTTLEVDLETTEKLAPLIP-KDVILIS 212 (254)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHHHh-CC-----------CCEEEEeCCCcchheecHHHHHHHHhhCC-CCcEEEe
Confidence 3455555667987765 889888887774 22 22444443 22222 23345556665554 2444555
Q ss_pred EeCCCChhHHHHHHHhCCCceeeC
Q 046192 99 MSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 99 ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
-|+-.+.+.+......|+++||.=
T Consensus 213 ESGI~~~~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 213 ESGISTPEDVRRLAKAGADAFLVG 236 (254)
T ss_pred cCCCCCHHHHHHHHHcCCCEEEec
Confidence 566678899999999999999874
No 414
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.34 E-value=1.4e+02 Score=23.71 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=60.0
Q ss_pred eEEEEEeC--CHHH---HHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 9 FHVLAVDD--SIID---RKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 9 ~~ilivd~--~~~~---~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
.+|.|+-. .+.. ...+...|++.|+.+.........+. ....... +.......+|++++ -|+|| .+++
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~vi~----lGGDG-T~L~ 78 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQ-LKNVKTG-TLAEIGQQADLAIV----VGGDG-NMLG 78 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcC-ccccccc-chhhcCCCCCEEEE----ECCcH-HHHH
Confidence 45777733 2333 34566666677887776443322211 0000000 00001124566665 25677 5666
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
..+.... .++||+-+-. |=-+|+. .++++++..+++++.++.
T Consensus 79 aa~~~~~-~~~Pilgin~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 79 AARVLAR-YDIKVIGINR-------------GNLGFLT-DLDPDNALQQLSDVLEGH 120 (292)
T ss_pred HHHHhcC-CCCeEEEEEC-------------CCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 6665443 2678886654 3346766 678899999999998874
No 415
>PRK10551 phage resistance protein; Provisional
Probab=47.32 E-value=1.9e+02 Score=25.06 Aligned_cols=98 Identities=15% Similarity=0.230 Sum_probs=61.0
Q ss_pred HHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCC----CC-CHHHHHHHHHhhcCCCCCcE
Q 046192 24 IERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP----GM-TGYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 24 l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~----~~-~g~~~~~~l~~~~~~~~~~i 96 (187)
.-+.|++.|+.+.. +.++...+..+.. -++|.+=+|-..- .. ..-.+++.+......-++.+
T Consensus 402 ~l~~Lr~~G~~ialDDFGtg~ssl~~L~~-----------l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~v 470 (518)
T PRK10551 402 LFAWLHSQGIEIAIDDFGTGHSALIYLER-----------FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLT 470 (518)
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHh-----------CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEE
Confidence 33556788988876 7788888888844 4566888885322 11 12234454443332113333
Q ss_pred EEEeCCCChhHHHHHHHhCCC---c-eeeCCCChHHHHHHH
Q 046192 97 VIMSSENIPSRINRCLEEGAE---E-FFLKPVQLADVNKLK 133 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~~~l~~~i 133 (187)
| ...-.+.+....+.+.|++ + |+.||...+++...+
T Consensus 471 V-AEGVEt~~q~~~L~~~Gv~~~QGy~f~kP~~~~~~~~~l 510 (518)
T PRK10551 471 V-AEGVETPEQARWLRERGVNFLQGYWISRPLPLEDFVRWL 510 (518)
T ss_pred E-EEeCCcHHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHH
Confidence 3 4455677777777888875 3 468999998887655
No 416
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=47.26 E-value=1.5e+02 Score=23.86 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=50.6
Q ss_pred ceEEEEEeCCHHHH-HHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC-------HH
Q 046192 8 QFHVLAVDDSIIDR-KLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT-------GY 79 (187)
Q Consensus 8 ~~~ilivd~~~~~~-~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~-------g~ 79 (187)
.++|.+.|+.|..- ..+.+.|++.|..++...+..-..-.- .+|.|++..+.-..| |-
T Consensus 145 ~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~--------------~vd~VivGad~I~~nG~lvnkiGT 210 (301)
T COG1184 145 RFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMS--------------RVDKVLVGADAILANGALVNKIGT 210 (301)
T ss_pred ceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHHH--------------hCCEEEECccceecCCcEEeccch
Confidence 47899999998765 667788888898887766554332221 356777776655444 43
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCC
Q 046192 80 DLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
..+...-+.. ..|+++++..
T Consensus 211 ~~lA~~A~e~---~~Pf~v~aes 230 (301)
T COG1184 211 SPLALAAREL---RVPFYVVAES 230 (301)
T ss_pred HHHHHHHHHh---CCCEEEEeee
Confidence 4444433333 7899988864
No 417
>PLN02275 transferase, transferring glycosyl groups
Probab=47.25 E-value=1.5e+02 Score=24.00 Aligned_cols=104 Identities=11% Similarity=0.117 Sum_probs=63.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCce-EEEe---CCHHHHHHHHhccCcccccccccccccEEEEec-cC-CCCCHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY-CM-PGMTGYDL 81 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~-v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~-~~-~~~~g~~~ 81 (187)
.++.+|++|-+. ++.+++..++.|.. +... -..++.-..+. ..|+.++=. .. ...-+..+
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~-------------~aDv~v~~~~s~~~e~~p~~l 326 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLG-------------SADLGVSLHTSSSGLDLPMKV 326 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHH-------------hCCEEEEeccccccccccHHH
Confidence 578899998775 56777887776642 3332 23455555552 245766411 11 11224556
Q ss_pred HHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 82 LRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
++.+.. .+|||...... ..+..+.|.++|+.. +.++|.+++..+
T Consensus 327 lEAmA~-----G~PVVa~~~gg----~~eiv~~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 327 VDMFGC-----GLPVCAVSYSC----IGELVKDGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred HHHHHC-----CCCEEEecCCC----hHHHccCCCCeEEEC--CHHHHHHHHHHh
Confidence 666554 78998754322 445667888999985 578888877665
No 418
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=47.19 E-value=1e+02 Score=21.85 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=44.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---CC-ce-EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 10 HVLAVDDSIIDRKLIERLLKT---SS-YQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~---~~-~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
-+.||+||+.++..|++-..+ .+ .- |+.+.+ .++++.+...-| .+.+--.+|-++.++
T Consensus 64 plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~t-~~~L~~Lr~lap----------------gl~l~P~sgddLA~r 126 (142)
T PF11072_consen 64 PLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVAT-EAALQRLRQLAP----------------GLPLLPVSGDDLARR 126 (142)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecCC-HHHHHHHHHHcC----------------CCeecCCCHHHHHHH
Confidence 468999999999999876643 33 11 333444 455566544333 334445689899998
Q ss_pred HHhhcCCCCCcEEEEe
Q 046192 85 IKESASLKDIPVVIMS 100 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls 100 (187)
+.-. +-|+++..
T Consensus 127 L~l~----HYPvLIt~ 138 (142)
T PF11072_consen 127 LGLS----HYPVLITA 138 (142)
T ss_pred hCCC----cccEEeec
Confidence 8533 66887654
No 419
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.09 E-value=1.5e+02 Score=23.67 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=53.3
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHh---CCceEEE--e---CCHHHHHHHHhccCcccccccccccccEEEEeccCC-CCC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKT---SSYQVTA--V---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GMT 77 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~---~~~~v~~--~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~ 77 (187)
+.+-++.++|++.+....+...+. .|+.+.. . .+.++.++.+...+.| ..+|=+++-.-+| +.+
T Consensus 31 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d-------~~V~GIivqlPLp~~i~ 103 (282)
T PRK14182 31 TGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNAD-------PAVHGILVQLPLPKHVD 103 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC-------CCCCEEEEeCCCCCCCC
Confidence 457889999999999888887754 5765554 2 2566777888766544 4588999998888 467
Q ss_pred HHHHHHHHHh
Q 046192 78 GYDLLRKIKE 87 (187)
Q Consensus 78 g~~~~~~l~~ 87 (187)
-..+++.|..
T Consensus 104 ~~~i~~~I~p 113 (282)
T PRK14182 104 ERAVLDAISP 113 (282)
T ss_pred HHHHHhccCc
Confidence 6666666644
No 420
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=47.02 E-value=1.2e+02 Score=23.82 Aligned_cols=54 Identities=17% Similarity=0.304 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
.+.++.+|+..+ .. .|.++.+ +.+.+.+|.+.|++....-|+.++.+...++.+
T Consensus 171 ~~av~~~R~~~~--~~-~IgVev~-t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~ 224 (272)
T cd01573 171 LKALARLRATAP--EK-KIVVEVD-SLEEALAAAEAGADILQLDKFSPEELAELVPKL 224 (272)
T ss_pred HHHHHHHHHhCC--CC-eEEEEcC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 456777787654 44 3445544 577888899999998888999999887666544
No 421
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=46.88 E-value=1.4e+02 Score=23.71 Aligned_cols=69 Identities=20% Similarity=0.391 Sum_probs=46.1
Q ss_pred eCCHHHHHHHHhccCcccccccccccccEEEEec--------cCCCCCHHHHHHHHHhhcCCCCCcEEEEeC-CCChhHH
Q 046192 38 VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY--------CMPGMTGYDLLRKIKESASLKDIPVVIMSS-ENIPSRI 108 (187)
Q Consensus 38 ~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~--------~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~-~~~~~~~ 108 (187)
+++.+++.+..... .+|.+-+.+ .-|. =+++.++.|++.. ++|+++... .-+.+.+
T Consensus 152 ~t~~eea~~f~~~t-----------gvD~Lavs~Gt~hg~~~~~~~-l~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i 216 (282)
T TIGR01859 152 LADPDEAEQFVKET-----------GVDYLAAAIGTSHGKYKGEPG-LDFERLKEIKELT---NIPLVLHGASGIPEEQI 216 (282)
T ss_pred cCCHHHHHHHHHHH-----------CcCEEeeccCccccccCCCCc-cCHHHHHHHHHHh---CCCEEEECCCCCCHHHH
Confidence 44677777776322 355666442 1122 3588999998865 689988863 3467788
Q ss_pred HHHHHhCCCceee
Q 046192 109 NRCLEEGAEEFFL 121 (187)
Q Consensus 109 ~~a~~~ga~~yl~ 121 (187)
.++++.|++..=.
T Consensus 217 ~~~i~~Gi~kiNv 229 (282)
T TIGR01859 217 KKAIKLGIAKINI 229 (282)
T ss_pred HHHHHcCCCEEEE
Confidence 8999999987633
No 422
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=46.81 E-value=1.1e+02 Score=21.99 Aligned_cols=55 Identities=27% Similarity=0.417 Sum_probs=39.9
Q ss_pred cccEEEEeccCCC--------CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPG--------MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~--------~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|.+++....|. ..+.+.++.+++. . ++|+++...- +.+.+..+...|++++..
T Consensus 115 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 115 GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-V--EIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-C--CCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 3778888754332 3467888888765 2 7899888765 578888999999998743
No 423
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=46.80 E-value=1.9e+02 Score=24.93 Aligned_cols=105 Identities=5% Similarity=0.124 Sum_probs=59.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
..+..|+++.+. +..+.++.+..+. .|..... .+..+.+. ..|++++- .....-|+.+++.+
T Consensus 350 ~~~l~i~G~G~~-~~~l~~~i~~~~l~~~V~f~G~-~~~~~~~~-------------~adv~v~p-S~~Egfgl~~lEAm 413 (500)
T TIGR02918 350 ELTFDIYGEGGE-KQKLQKIINENQAQDYIHLKGH-RNLSEVYK-------------DYELYLSA-STSEGFGLTLMEAV 413 (500)
T ss_pred CeEEEEEECchh-HHHHHHHHHHcCCCCeEEEcCC-CCHHHHHH-------------hCCEEEEc-CccccccHHHHHHH
Confidence 456667776664 3456666655442 2322221 12222221 23465553 34455677777777
Q ss_pred HhhcCCCCCcEEEEeCC-CChhHHHHHHHhCCCceeeCC----CC----hHHHHHHHHHHh
Q 046192 86 KESASLKDIPVVIMSSE-NIPSRINRCLEEGAEEFFLKP----VQ----LADVNKLKPHLM 137 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~-~~~~~~~~a~~~ga~~yl~kP----~~----~~~l~~~i~~~~ 137 (187)
.. .+|||..... .. .+.+..|.++|+..+ -+ .++|.+++..++
T Consensus 414 a~-----G~PVI~~dv~~G~----~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll 465 (500)
T TIGR02918 414 GS-----GLGMIGFDVNYGN----PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF 465 (500)
T ss_pred Hh-----CCCEEEecCCCCC----HHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh
Confidence 64 7889865432 22 344567899999973 22 677777777776
No 424
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=46.52 E-value=55 Score=26.54 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHH----HHHhCC--CceeeC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINR----CLEEGA--EEFFLK 122 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~----a~~~ga--~~yl~k 122 (187)
-+.++.+++.....++|+|++|+..+.+...+ |.++|+ ++||+=
T Consensus 227 ~eA~~~f~eq~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~G 276 (325)
T TIGR01232 227 EEAAQHFKDQDAATHLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLCG 276 (325)
T ss_pred HHHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEee
Confidence 36777777644334899999999988887665 556788 688763
No 425
>PLN02939 transferase, transferring glycosyl groups
Probab=46.52 E-value=2.6e+02 Score=26.49 Aligned_cols=69 Identities=7% Similarity=0.029 Sum_probs=44.6
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHH-----HHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRC-----LEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a-----~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.|++++--. ...-|+..++.++. .+|+|+.....-.+.+... ...|.++|+..|.+++.|..++.+++.
T Consensus 857 ADIFLmPSr-~EPfGLvqLEAMAy-----GtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 857 SDMFIIPSM-FEPCGLTQMIAMRY-----GSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFN 930 (977)
T ss_pred CCEEEECCC-ccCCcHHHHHHHHC-----CCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHH
Confidence 567777443 35667777777765 5556654433333333211 123688999999999999988888765
No 426
>PRK04841 transcriptional regulator MalT; Provisional
Probab=46.17 E-value=2.9 Score=38.21 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=15.9
Q ss_pred hhhhhcccccccCCCCCCCccC
Q 046192 165 RTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 165 ~~~~~e~~~l~l~~~g~~~~ei 186 (187)
.++.+|.+|+.+..+|+||+||
T Consensus 838 ~lt~~e~~v~~~~~~g~~~~~i 859 (903)
T PRK04841 838 PLTQREWQVLGLIYSGYSNEQI 859 (903)
T ss_pred CCCHHHHHHHHHHHcCCCHHHH
Confidence 4677777777777777777776
No 427
>PRK15482 transcriptional regulator MurR; Provisional
Probab=46.10 E-value=1.4e+02 Score=23.28 Aligned_cols=84 Identities=11% Similarity=0.045 Sum_probs=48.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccE-EEEeccCCCCCHHHHHHHHHhhc
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNL-IITDYCMPGMTGYDLLRKIKESA 89 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dl-vi~d~~~~~~~g~~~~~~l~~~~ 89 (187)
|+=++........+...|...|+.+....+............+ -|+ +++...-...+-.++++..++.
T Consensus 140 i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~----------~Dv~i~iS~sg~t~~~~~~~~~a~~~- 208 (285)
T PRK15482 140 ITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKK----------GDVQIAISYSGSKKEIVLCAEAARKQ- 208 (285)
T ss_pred EEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCC----------CCEEEEEeCCCCCHHHHHHHHHHHHC-
Confidence 3334445666777777777788877765555443333322222 234 3444432234566677777764
Q ss_pred CCCCCcEEEEeCCCChhHH
Q 046192 90 SLKDIPVVIMSSENIPSRI 108 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~ 108 (187)
+.++|.+|+.......
T Consensus 209 ---g~~iI~IT~~~~s~la 224 (285)
T PRK15482 209 ---GATVIAITSLADSPLR 224 (285)
T ss_pred ---CCEEEEEeCCCCCchH
Confidence 6799999997655443
No 428
>PRK11596 cyclic-di-GMP phosphodiesterase; Provisional
Probab=45.30 E-value=1.4e+02 Score=22.87 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=56.2
Q ss_pred HHHHhCC-ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccC----C-CCCHHHHHHHHHhhcCCCCCcEEEE
Q 046192 26 RLLKTSS-YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM----P-GMTGYDLLRKIKESASLKDIPVVIM 99 (187)
Q Consensus 26 ~~l~~~~-~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~----~-~~~g~~~~~~l~~~~~~~~~~iI~l 99 (187)
..|.+.| +-+..+.++...+..+. ..+||.|=+|-.+ . +..+..+++.+-......+.. ++.
T Consensus 147 ~~l~~~~~laLDDfG~g~s~l~~L~-----------~l~~d~IKiD~~~i~~i~~~~~~~~~~~~lv~~a~~~~~~-viA 214 (255)
T PRK11596 147 ASMCEFGPLWLDDFGTGMANFSALS-----------EVRYDYIKVARELFIMLRQSEEGRNLFSQLLHLMNRYCRG-VIV 214 (255)
T ss_pred HHHHHcCCEEEecCCCCHHHHHHHH-----------hCCCCEEEECHHHHHhhhcChhhHHHHHHHHHHHHHcCCe-EEE
Confidence 4444555 22223666767777774 3456688888532 1 223444444332221111333 445
Q ss_pred eCCCChhHHHHHHHhCCC---c-eeeCCCChHHHHHHH
Q 046192 100 SSENIPSRINRCLEEGAE---E-FFLKPVQLADVNKLK 133 (187)
Q Consensus 100 s~~~~~~~~~~a~~~ga~---~-yl~kP~~~~~l~~~i 133 (187)
..-.+.+....+.+.|++ + |+.||...+++...+
T Consensus 215 eGVEt~eq~~~l~~lG~d~~QGy~~~~P~~~~~~~~l~ 252 (255)
T PRK11596 215 EGVETPEEWRDVQRSPAFAAQGYFLSRPAPFETLETLP 252 (255)
T ss_pred EeCCCHHHHHHHHHCCCCEeecCccCCCCCHHHHHHHH
Confidence 666788888899999987 4 578899888875543
No 429
>TIGR03020 EpsA transcriptional regulator EpsA. Proteins in this family include a C-terminal LuxR transcriptional regulator domain (pfam00196). These proteins are positioned proximal to either EpsH-containing exopolysaccharide biosynthesis operons of the Methylobacillus type, or the associated PEP-CTERM-containing genes.
Probab=44.99 E-value=2.8 Score=32.53 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.7
Q ss_pred chhhhhhcccccccCCCCCCCccC
Q 046192 163 ADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 163 ~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
...++.+|.+++.+..+|+|++||
T Consensus 188 ~~~LT~RE~evl~l~a~G~s~~eI 211 (247)
T TIGR03020 188 AGLITAREAEILAWVRDGKTNEEI 211 (247)
T ss_pred ccCCCHHHHHHHHHHHCCCCHHHH
Confidence 456899999999999999999987
No 430
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=44.93 E-value=1.3e+02 Score=22.57 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=49.0
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRKI 85 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~l 85 (187)
...++||.+...-....+...|.+.|+.+..+....+....+...- ......+..+..++.+.+.+ .++..+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l-------~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKL-------RQEGIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHH-------HhcCCeEEEEecCCCCHHHHHHHHHHH
Confidence 4457899998888888899889888988877554333332221110 00112244444555554443 356666
Q ss_pred HhhcCCCCCcEEEEeC
Q 046192 86 KESASLKDIPVVIMSS 101 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~ 101 (187)
.+... .+.+++...
T Consensus 81 ~~~~~--~id~vi~~a 94 (254)
T PRK08085 81 EKDIG--PIDVLINNA 94 (254)
T ss_pred HHhcC--CCCEEEECC
Confidence 55443 556666654
No 431
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=44.85 E-value=1.6e+02 Score=23.60 Aligned_cols=79 Identities=13% Similarity=0.223 Sum_probs=50.5
Q ss_pred CceEEEEEeCCHHHH-HHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccC--CC-----CCH
Q 046192 7 SQFHVLAVDDSIIDR-KLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM--PG-----MTG 78 (187)
Q Consensus 7 ~~~~ilivd~~~~~~-~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~--~~-----~~g 78 (187)
.+++|.+.|..|... ..+.+.|.+.|+.+....+..-+. .+. .+|.|++..+. .+ ..|
T Consensus 145 k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~-~m~-------------~vd~VivGAd~v~~nG~v~nkiG 210 (310)
T PRK08535 145 KDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRY-FMK-------------DVDKVVVGADAITANGAVINKIG 210 (310)
T ss_pred CeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHH-HHH-------------hCCEEEECccEEecCCCEEeHHh
Confidence 468899999998743 556777888898888766543332 221 25677775533 22 235
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
--.+..+-+.+ ++|+++++..
T Consensus 211 T~~~A~~Ak~~---~vPv~V~a~~ 231 (310)
T PRK08535 211 TSQIALAAHEA---RVPFMVAAET 231 (310)
T ss_pred HHHHHHHHHHh---CCCEEEeccc
Confidence 55555555544 8899998764
No 432
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=44.81 E-value=91 Score=20.65 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=19.6
Q ss_pred EeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHH
Q 046192 14 VDDSIIDRKLIERLLKTSSYQVTAVDSGNKALE 46 (187)
Q Consensus 14 vd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~ 46 (187)
-|.+......+...|...||.+.......+.++
T Consensus 7 ~d~~K~~~~~~a~~l~~~G~~i~AT~gTa~~L~ 39 (112)
T cd00532 7 SDHVKAMLVDLAPKLSSDGFPLFATGGTSRVLA 39 (112)
T ss_pred EcccHHHHHHHHHHHHHCCCEEEECcHHHHHHH
Confidence 344445555666777778998876544444443
No 433
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=44.80 E-value=1.6e+02 Score=23.41 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=59.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEE--e---CCHHHHHHHHhccCcccccccccccccEEEEeccC---C-----
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTA--V---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM---P----- 74 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~--~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~---~----- 74 (187)
+-+||=+|.|+.....=-+.-++.|..+.. + .-++.....+...+|| ++++--+- .
T Consensus 104 PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PD-----------IlViTGHD~~~K~~~d~ 172 (283)
T TIGR02855 104 PGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPD-----------ILVITGHDAYSKNKGNY 172 (283)
T ss_pred CCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCC-----------EEEEeCchhhhcCCCCh
Confidence 568999999998776655555677765554 2 3344555666555554 77775422 1
Q ss_pred -CCC----HHHHH---HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 75 -GMT----GYDLL---RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 75 -~~~----g~~~~---~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
+.+ .--|+ +..|+--| +.-=+++-+..-.......+++||+ |-+.|
T Consensus 173 ~dl~~YrnSkyFVeaVk~aR~y~~--~~D~LVIFAGACQS~yEall~AGAN-FASSP 226 (283)
T TIGR02855 173 MDLNAYRHSKYFVETVREARKYVP--SLDQLVIFAGACQSHFESLIRAGAN-FASSP 226 (283)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCC--CcccEEEEcchhHHHHHHHHHcCcc-ccCCc
Confidence 111 22244 44454443 4433344444567777888999987 54544
No 434
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=44.71 E-value=1.7e+02 Score=23.84 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=50.1
Q ss_pred CceEEEEEeCCHHHHH--HHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC-------C
Q 046192 7 SQFHVLAVDDSIIDRK--LIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM-------T 77 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~--~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~-------~ 77 (187)
...+|.+.|..|...- .....|.+.|+.+....+..-+ ..+ ....+|.|++..+---. -
T Consensus 179 ~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~-~~m-----------~~~~vd~VivGAd~v~~nG~v~nki 246 (331)
T TIGR00512 179 RLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAA-HLM-----------KHGEVDAVIVGADRIAANGDTANKI 246 (331)
T ss_pred CceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHH-HHh-----------cccCCCEEEEcccEEecCCCEeehh
Confidence 4588999999987553 2367788889888876654333 222 22347788876543222 2
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCC
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSEN 103 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~ 103 (187)
|--.+..+-+.+ ++|+++++...
T Consensus 247 GT~~lA~~Ak~~---~vPfyV~a~~~ 269 (331)
T TIGR00512 247 GTYQLAVLAKHH---GVPFYVAAPTS 269 (331)
T ss_pred hHHHHHHHHHHh---CCCEEEecccc
Confidence 333444443433 78999987643
No 435
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.68 E-value=1.3e+02 Score=23.86 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.+.++.+|+..|. ..+|.+ ...+.+.+.++.++|+|-.++-.++++++.+++..+-
T Consensus 180 ~~av~~~r~~~~~-~~kIeV--Ev~slee~~ea~~~gaDiImLDn~s~e~l~~av~~~~ 235 (281)
T PRK06543 180 TEALRHVRAQLGH-TTHVEV--EVDRLDQIEPVLAAGVDTIMLDNFSLDDLREGVELVD 235 (281)
T ss_pred HHHHHHHHHhCCC-CCcEEE--EeCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHhC
Confidence 4567777776541 244443 3346889999999999999999999999999987553
No 436
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=44.62 E-value=1.5e+02 Score=23.07 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=41.5
Q ss_pred ccEEEEeccCCCC----CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 64 VNLIITDYCMPGM----TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 64 ~dlvi~d~~~~~~----~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.|++++-....+. .+..+++.+.. .+|+|........+ .+..+-.+++..+-+.+++.+.+..++..
T Consensus 295 ~di~i~~~~~~~~~~~~~p~~~~Ea~~~-----G~pvi~~~~~~~~~----~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 295 ADVGLVPLKPGPAFEGVSPSKLFEYMAA-----GKPVLASVDGESAE----LVEEAGAGLVVPPGDPEALAAAILELLDD 365 (394)
T ss_pred hCeeEEeccCcccccccCchHHHHHHHC-----CCcEEEecCCCchh----hhccCCcceEeCCCCHHHHHHHHHHHHhC
Confidence 4566655443322 13335565543 77888655443333 23344667899998999999999998844
No 437
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=44.59 E-value=1.4e+02 Score=22.75 Aligned_cols=67 Identities=15% Similarity=0.348 Sum_probs=49.5
Q ss_pred eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC---------CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHH
Q 046192 38 VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG---------MTGYDLLRKIKESASLKDIPVVIMSSENIPSRI 108 (187)
Q Consensus 38 ~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~---------~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~ 108 (187)
+++.++++.... ..+|+| ...|.+ ..-+++++.+.+. ..++|.=..+..++.+
T Consensus 134 ~St~ee~l~a~~------------~G~D~I--GTTLsGYT~~~~~~~~pDf~lvk~l~~~----~~~vIAEGr~~tP~~A 195 (229)
T COG3010 134 CSTFEEGLNAHK------------LGFDII--GTTLSGYTGYTEKPTEPDFQLVKQLSDA----GCRVIAEGRYNTPEQA 195 (229)
T ss_pred cCCHHHHHHHHH------------cCCcEE--ecccccccCCCCCCCCCcHHHHHHHHhC----CCeEEeeCCCCCHHHH
Confidence 788888876652 235544 444443 3457889998873 7789998999999999
Q ss_pred HHHHHhCCCceeeC
Q 046192 109 NRCLEEGAEEFFLK 122 (187)
Q Consensus 109 ~~a~~~ga~~yl~k 122 (187)
..+++.||+..+.=
T Consensus 196 k~a~~~Ga~aVvVG 209 (229)
T COG3010 196 KKAIEIGADAVVVG 209 (229)
T ss_pred HHHHHhCCeEEEEC
Confidence 99999999987643
No 438
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=44.53 E-value=89 Score=28.71 Aligned_cols=62 Identities=10% Similarity=0.218 Sum_probs=45.5
Q ss_pred EEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 66 LIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 66 lvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
++++ ......-|+.+++.+.. .+|+|...... ..+.+..|.++|+..|.+++++.+++.+++
T Consensus 646 VfV~-PS~~EpFGLvvLEAMAc-----GlPVVAT~~GG----~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll 707 (784)
T TIGR02470 646 IFVQ-PALYEAFGLTVLEAMTC-----GLPTFATRFGG----PLEIIQDGVSGFHIDPYHGEEAAEKIVDFF 707 (784)
T ss_pred EEEE-CCcccCCCHHHHHHHHc-----CCCEEEcCCCC----HHHHhcCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 5444 34556778888888875 78898644332 334556799999999999999999988775
No 439
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=44.49 E-value=1.5e+02 Score=23.11 Aligned_cols=92 Identities=18% Similarity=0.283 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHhC-CceEEE------eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CCHHHHHHHHHh
Q 046192 16 DSIIDRKLIERLLKTS-SYQVTA------VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MTGYDLLRKIKE 87 (187)
Q Consensus 16 ~~~~~~~~l~~~l~~~-~~~v~~------~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~~ 87 (187)
|.......++.+++.. +..++. +.+..++++.+.. ..++=|+..-.-+. .+|.+.++.+.+
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~-----------lG~~rILTSGg~~~a~~g~~~L~~lv~ 166 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLAD-----------LGVARILTSGQQQDAEQGLSLIMELIA 166 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHH-----------cCCCEEECCCCCCCHHHHHHHHHHHHH
Confidence 4456677777777654 344432 4678888888843 34667887766654 678999998877
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
... . .+|+..+.-..+.+......|+..|-.
T Consensus 167 ~a~--~-~~Im~GgGV~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 167 ASD--G-PIIMAGAGVRLSNLHKFLDAGVREVHS 197 (248)
T ss_pred hcC--C-CEEEeCCCCCHHHHHHHHHcCCCEEee
Confidence 653 3 457777777777777777899988864
No 440
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=44.37 E-value=1.4e+02 Score=22.63 Aligned_cols=84 Identities=20% Similarity=0.135 Sum_probs=50.7
Q ss_pred HHHhCCceEE--EeCCHHHHHHHHhccCcccccccccccccEEEE---eccCCCCCHHHHHHHHHhhcCC--CCCcEEEE
Q 046192 27 LLKTSSYQVT--AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT---DYCMPGMTGYDLLRKIKESASL--KDIPVVIM 99 (187)
Q Consensus 27 ~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~---d~~~~~~~g~~~~~~l~~~~~~--~~~~iI~l 99 (187)
.|+..|+.+. .+.+..+++...... .+.|-. -+.-.+.+|+++++.+.+.... .+++ |+.
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG------------a~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tk-Ila 162 (213)
T TIGR00875 96 ILKKEGIKTNVTLVFSAAQALLAAKAG------------ATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTE-VIA 162 (213)
T ss_pred HHHHCCCceeEEEecCHHHHHHHHHcC------------CCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCE-EEE
Confidence 4555665443 366777776665321 222211 1122356899988887665311 2566 456
Q ss_pred eCCCChhHHHHHHHhCCCceeeCC
Q 046192 100 SSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 100 s~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
++..+...+.++...|++.+-..|
T Consensus 163 AS~r~~~~v~~~~~~G~d~vTip~ 186 (213)
T TIGR00875 163 ASVRHPRHVLEAALIGADIATMPL 186 (213)
T ss_pred eccCCHHHHHHHHHcCCCEEEcCH
Confidence 666788999999999999766544
No 441
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=44.34 E-value=1.5e+02 Score=22.97 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=49.8
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHh-CCceEEEeC----CH---HHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKT-SSYQVTAVD----SG---NKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~-~~~~v~~~~----~~---~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
...+|.+++..+...+.+.+.|++ .|..+..+. +. ++.++.+ ....+|+|++-.-.|...-
T Consensus 104 ~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I-----------~~s~~dil~VglG~PkQE~ 172 (243)
T PRK03692 104 EGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERI-----------HASGAKIVTVAMGSPKQEI 172 (243)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHH-----------HhcCCCEEEEECCCcHHHH
Confidence 347899999999999999998865 355554422 22 2234555 3445779999999998664
Q ss_pred HHHHHHHHhhcCCCCCcEEE
Q 046192 79 YDLLRKIKESASLKDIPVVI 98 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ 98 (187)
++...+... ..++++
T Consensus 173 --~~~~~~~~~---~~~v~~ 187 (243)
T PRK03692 173 --FMRDCRLVY---PDALYM 187 (243)
T ss_pred --HHHHHHHhC---CCCEEE
Confidence 456665543 345543
No 442
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.10 E-value=1.4e+02 Score=22.49 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=8.9
Q ss_pred HHHHHHHHhCCceEEE
Q 046192 22 KLIERLLKTSSYQVTA 37 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~~ 37 (187)
..+...+++.||.+..
T Consensus 19 ~gi~~~~~~~g~~~~~ 34 (270)
T cd06296 19 RGVEEAAAAAGYDVVL 34 (270)
T ss_pred HHHHHHHHHcCCeEEE
Confidence 4444555556666654
No 443
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.10 E-value=2e+02 Score=24.30 Aligned_cols=98 Identities=12% Similarity=0.175 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH----H---HHHHHHHhhc
Q 046192 17 SIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG----Y---DLLRKIKESA 89 (187)
Q Consensus 17 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g----~---~~~~~l~~~~ 89 (187)
+....+.+...|...||.++.- ....|+++++....-... . ..++.+++.+
T Consensus 14 N~~ds~~~~~~l~~~G~~~~~~----------------------~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~ 71 (439)
T PRK14328 14 NEEDSEKLAGMLKSMGYERTEN----------------------REEADIIIFNTCCVRENAENKVFGNLGELKKLKEKN 71 (439)
T ss_pred CHHHHHHHHHHHHHCcCEECCC----------------------cCcCCEEEEecccEechHHHHHHHHHHHHHHHHhhC
Confidence 4455667777887778766431 123679999987654332 2 2233444444
Q ss_pred CCCCCcEEEEeCCCChh-HHHHHH-HhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 90 SLKDIPVVIMSSENIPS-RINRCL-EEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~-~~~~a~-~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+ ..+||+........ ...+.. ...-.|++..+-....+...+..+..
T Consensus 72 ~--~~~vvv~GC~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~~ 120 (439)
T PRK14328 72 P--NLIIGVCGCMMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVKE 120 (439)
T ss_pred C--CCEEEEECchhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHhc
Confidence 4 55566555543331 111222 24345577788888888777776653
No 444
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=44.00 E-value=1.5e+02 Score=22.82 Aligned_cols=65 Identities=12% Similarity=0.282 Sum_probs=43.1
Q ss_pred EEEEeccCC---CCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHh-CCCceee------CCCChHHHHHHH
Q 046192 66 LIITDYCMP---GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEE-GAEEFFL------KPVQLADVNKLK 133 (187)
Q Consensus 66 lvi~d~~~~---~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~-ga~~yl~------kP~~~~~l~~~i 133 (187)
+++.++.-. ..--+++++.+++.. +.|+|.-..-.+.+.+.++++. |+++.+. .-++..++...+
T Consensus 170 ii~~~i~~~g~~~g~d~~~i~~~~~~~---~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~ 244 (253)
T PRK02083 170 ILLTSMDRDGTKNGYDLELTRAVSDAV---NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYL 244 (253)
T ss_pred EEEcCCcCCCCCCCcCHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHH
Confidence 566554321 122356778887754 7899999988899999999975 9987665 344555554443
No 445
>PRK00654 glgA glycogen synthase; Provisional
Probab=43.76 E-value=2e+02 Score=24.29 Aligned_cols=108 Identities=7% Similarity=0.027 Sum_probs=61.8
Q ss_pred ceEEEEEeCC-HHHHHHHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 8 QFHVLAVDDS-IIDRKLIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 8 ~~~ilivd~~-~~~~~~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
..+++|+++. +.....+.++.++.+..+.. ..+.+..-..+. ..|++++-. ....-|+..++.
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~-------------~aDv~v~PS-~~E~~gl~~lEA 376 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA-------------GADMFLMPS-RFEPCGLTQLYA 376 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh-------------hCCEEEeCC-CCCCchHHHHHH
Confidence 4566777664 34455666666555533332 222222223331 245777643 345667777777
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhC------CCceeeCCCChHHHHHHHHHHhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEG------AEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~g------a~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+.. .+|+|+.....-.+ ....| .++++..|.++++|..++.+++.
T Consensus 377 ma~-----G~p~V~~~~gG~~e----~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 377 LRY-----GTLPIVRRTGGLAD----TVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred HHC-----CCCEEEeCCCCccc----eeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 654 56666543322222 22233 77899999999999999888764
No 446
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=43.72 E-value=1.6e+02 Score=23.32 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=45.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCC---c--eEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC-----C
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSS---Y--QVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM-----T 77 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~---~--~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~-----~ 77 (187)
-++.+||=|+.+.+.-++.|.... + ++.. ..+|.+.++.. . ..+|+||+|..-|.. .
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-----------~-~~fDvIi~D~tdp~gp~~~Lf 168 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-----------E-EKFDVIIVDSTDPVGPAEALF 168 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-----------C-CcCCEEEEcCCCCCCcccccC
Confidence 467788888888888888875432 1 2222 45555554443 2 269999999988832 2
Q ss_pred HHHHHHHHHhhcC
Q 046192 78 GYDLLRKIKESAS 90 (187)
Q Consensus 78 g~~~~~~l~~~~~ 90 (187)
-.++.+.+++...
T Consensus 169 t~eFy~~~~~~L~ 181 (282)
T COG0421 169 TEEFYEGCRRALK 181 (282)
T ss_pred CHHHHHHHHHhcC
Confidence 3477888877654
No 447
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=43.70 E-value=1.1e+02 Score=24.14 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=27.0
Q ss_pred eEEEEEeCCHHH---HHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEec
Q 046192 9 FHVLAVDDSIID---RKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY 71 (187)
Q Consensus 9 ~~ilivd~~~~~---~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~ 71 (187)
.+|.+++-|+.. .+.+..+-...|+.+..+.+..+....+... ..+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~----------~~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL----------RDKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc----------cCCCEEEEeC
Confidence 467777766632 2233333333455555555555555555322 1356787775
No 448
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=43.57 E-value=2e+02 Score=24.14 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=46.0
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCC-ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSS-YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~-~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
.+|||++. --+...+.+.|.+.+ ++|+.+.-..+....+.... ......+.+|.. +.-.+.+.|++
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~----d~~al~~li~~ 68 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAA----DVDALVALIKD 68 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--------cccceeEEeccc----ChHHHHHHHhc
Confidence 47888888 555556666666665 78877654444434332111 113445555542 22233344443
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCC
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAE 117 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~ 117 (187)
. ++-|-++....+...+..|++.|++
T Consensus 69 ~----d~VIn~~p~~~~~~i~ka~i~~gv~ 94 (389)
T COG1748 69 F----DLVINAAPPFVDLTILKACIKTGVD 94 (389)
T ss_pred C----CEEEEeCCchhhHHHHHHHHHhCCC
Confidence 2 2223333333445555566666665
No 449
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=43.55 E-value=83 Score=25.01 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=38.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEe-------CCHHHHHHHHhccCcccccccccccccEEEEeccCCC
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAV-------DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG 75 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~-------~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~ 75 (187)
+|||.+..-.....|.+.|. .++++... .+.+...+.+...+ ||+||--.-...
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~-----------PDvVIn~AAyt~ 62 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETR-----------PDVVINAAAYTA 62 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhhC-----------CCEEEECccccc
Confidence 48999999999999999997 45666643 35666777775444 458886665444
No 450
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=43.47 E-value=1.4e+02 Score=22.50 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=20.0
Q ss_pred EEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHH
Q 046192 66 LIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLE 113 (187)
Q Consensus 66 lvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~ 113 (187)
-|++|+.+.+......- .+.+. ..-++.+-.......+.++.+
T Consensus 58 ~v~~DLK~~Di~~~v~~-~~~~~----Gad~vTvH~~a~~~~i~~~~~ 100 (216)
T PRK13306 58 IIVADTKIADAGKILAK-MAFEA----GADWVTVICAAHIPTIKAALK 100 (216)
T ss_pred EEEEEEeecCCcHHHHH-HHHHC----CCCEEEEeCCCCHHHHHHHHH
Confidence 46777777665533221 23332 333444444445554444443
No 451
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=43.42 E-value=1.7e+02 Score=23.27 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=43.9
Q ss_pred EeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHHHHHhhcCC
Q 046192 14 VDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIKESASL 91 (187)
Q Consensus 14 vd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~~~~~~ 91 (187)
.+........+...|...|..+....+........... .+-|++|+ +..+| .+-.+.++..++.
T Consensus 50 ~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~----------~~~d~~i~-iS~sG~t~~~~~~~~~ak~~--- 115 (321)
T PRK11543 50 IGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMI----------ESRDVMLF-ISYSGGAKELDLIIPRLEDK--- 115 (321)
T ss_pred cChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCcc----------CCCCEEEE-EeCCCCcHHHHHHHHHHHHc---
Confidence 34444555666777777777666554432222121111 22345555 43343 3456677777764
Q ss_pred CCCcEEEEeCCCChh
Q 046192 92 KDIPVVIMSSENIPS 106 (187)
Q Consensus 92 ~~~~iI~ls~~~~~~ 106 (187)
+.|+|.+|+..+..
T Consensus 116 -g~~vI~iT~~~~s~ 129 (321)
T PRK11543 116 -SIALLAMTGKPTSP 129 (321)
T ss_pred -CCeEEEEECCCCCh
Confidence 68999999976544
No 452
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=43.40 E-value=1.4e+02 Score=22.42 Aligned_cols=37 Identities=16% Similarity=0.375 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
++++.+++. +.++.+.|-. +.+.+..++..|++++++
T Consensus 191 ~~i~~~~~~----g~~v~~Wtvn-~~~~~~~~~~~GVdgi~T 227 (230)
T cd08563 191 EVVEELKKR----GIPVRLWTVN-EEEDMKRLKDLGVDGIIT 227 (230)
T ss_pred HHHHHHHHC----CCEEEEEecC-CHHHHHHHHHCCCCEEeC
Confidence 456666654 6678888864 688888999999998875
No 453
>PLN02501 digalactosyldiacylglycerol synthase
Probab=43.35 E-value=2.7e+02 Score=25.65 Aligned_cols=105 Identities=9% Similarity=-0.001 Sum_probs=62.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+++|++|-|. +..+.......+..+......+.....+. ..|+.++-- ....-|..+++.+..
T Consensus 577 nvrLvIVGDGP~-reeLe~la~eLgL~V~FLG~~dd~~~lya-------------saDVFVlPS-~sEgFGlVlLEAMA~ 641 (794)
T PLN02501 577 GFNLDVFGNGED-AHEVQRAAKRLDLNLNFLKGRDHADDSLH-------------GYKVFINPS-ISDVLCTATAEALAM 641 (794)
T ss_pred CeEEEEEcCCcc-HHHHHHHHHHcCCEEEecCCCCCHHHHHH-------------hCCEEEECC-CcccchHHHHHHHHc
Confidence 478888988875 45677777766765543322222222331 245666533 345557677777654
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+|||......... +..|...++. -+.+++..++..++..
T Consensus 642 -----GlPVVATd~pG~e~-----V~~g~nGll~--~D~EafAeAI~~LLsd 681 (794)
T PLN02501 642 -----GKFVVCADHPSNEF-----FRSFPNCLTY--KTSEDFVAKVKEALAN 681 (794)
T ss_pred -----CCCEEEecCCCCce-----EeecCCeEec--CCHHHHHHHHHHHHhC
Confidence 78898776543221 3335555554 4688888888887754
No 454
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=43.25 E-value=1.4e+02 Score=22.29 Aligned_cols=37 Identities=19% Similarity=0.438 Sum_probs=23.9
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
++++.+++. +.+|.+.|-. +...+..++..|++++++
T Consensus 190 ~~v~~~~~~----g~~v~~wTvn-~~~~~~~~~~~gVdgiiT 226 (229)
T cd08562 190 EQVKALKDA----GYKLLVYTVN-DPARAAELLEWGVDAIFT 226 (229)
T ss_pred HHHHHHHHC----CCEEEEEeCC-CHHHHHHHHHCCCCEEEc
Confidence 455666553 5567666654 466677777777777664
No 455
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.10 E-value=2.1e+02 Score=24.27 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC----HHHHH---HHHHhh
Q 046192 16 DSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT----GYDLL---RKIKES 88 (187)
Q Consensus 16 ~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~----g~~~~---~~l~~~ 88 (187)
=+....+.+...|.+.||.++. . ...|++|++....-.+ ....+ +.+++.
T Consensus 15 ~N~~dse~~~~~l~~~G~~~~~--~---------------------~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~~ 71 (446)
T PRK14337 15 MNVNDSDWLARALVARGFTEAP--E---------------------EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATKK 71 (446)
T ss_pred CcHHHHHHHHHHHHHCCCEECC--c---------------------CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHHh
Confidence 4555667788888878886632 1 1256999998765433 23343 334555
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHH-HhCCCceeeCCCChHHHHHHHHHHh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCL-EEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~-~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
+| +.+|++....... .-...+ ...--|++..+-....+.+.+..+.
T Consensus 72 ~p--~~~ivv~GC~a~~-~~~~~~~~~p~vd~vv~~~~~~~i~~l~~~~~ 118 (446)
T PRK14337 72 NP--DVFVAVGGCVAQQ-IGSGFFSRFPQVRLVFGTDGIAMAPQALERLA 118 (446)
T ss_pred CC--CCEEEEECCcccc-ccHHHHhhCCCCcEEECCCCHHHHHHHHHHHh
Confidence 54 6666665544322 222222 3444568888888877777776654
No 456
>PRK05993 short chain dehydrogenase; Provisional
Probab=43.08 E-value=1.1e+02 Score=23.61 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=24.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCC
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDS 40 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~ 40 (187)
.+|+|.+...-....+...|.+.|+.|..+..
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r 36 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCR 36 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 36888888888888888888777887776543
No 457
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.91 E-value=1.8e+02 Score=23.43 Aligned_cols=100 Identities=16% Similarity=0.261 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCceEEEeCCHHHHHHHHhc---cC---cc-cccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCC
Q 046192 21 RKLIERLLKTSSYQVTAVDSGNKALEFLGL---LN---ED-EQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKD 93 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~---~~---~~-~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ 93 (187)
...+...|.+.|+.+.......+.+..-.. .. .+ .........+|++|+ -|+|| .+++..+.... .+
T Consensus 19 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGDG-TlL~aar~~~~-~~ 92 (305)
T PRK02649 19 AEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGDG-TVLSAARQLAP-CG 92 (305)
T ss_pred HHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCcH-HHHHHHHHhcC-CC
Confidence 456666677788888765433222210000 00 00 000001123566665 25777 67777776443 37
Q ss_pred CcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 94 IPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 94 ~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+||+-+.. |--+|+. .++++++...++++.++.
T Consensus 93 iPilGIN~-------------G~lGFLt-~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 93 IPLLTINT-------------GHLGFLT-EAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CcEEEEeC-------------CCCcccc-cCCHHHHHHHHHHHHcCC
Confidence 89887653 4456777 467889999999999874
No 458
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.75 E-value=1.5e+02 Score=22.42 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=9.6
Q ss_pred HHHHHHHHhCCceEEE
Q 046192 22 KLIERLLKTSSYQVTA 37 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~~ 37 (187)
..+.+.+++.||.+..
T Consensus 19 ~gi~~~~~~~g~~~~~ 34 (273)
T cd06292 19 EAIEAALAQYGYTVLL 34 (273)
T ss_pred HHHHHHHHHCCCEEEE
Confidence 4555555666776654
No 459
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=42.72 E-value=1.8e+02 Score=23.51 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=40.3
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHH
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKP 134 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~ 134 (187)
+.|+|++.-.+|..=+.++..++-+.....+.++++=++ .....++++.+ =++.|| +.+||.....
T Consensus 129 ~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~S---g~~L~~~L~~~--P~lIKP-N~~EL~~~~g 194 (310)
T COG1105 129 SDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTS---GEALLAALEAK--PWLIKP-NREELEALFG 194 (310)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECC---hHHHHHHHccC--CcEEec-CHHHHHHHhC
Confidence 467999999998765555444332222212455554333 55666777777 679999 6666655543
No 460
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=42.71 E-value=1.4e+02 Score=22.28 Aligned_cols=68 Identities=18% Similarity=0.112 Sum_probs=46.1
Q ss_pred CceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHH
Q 046192 32 SYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIKESASLKDIPVVIMSSENIPSRIN 109 (187)
Q Consensus 32 ~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~ 109 (187)
++.|...++.+++.+.+.. ..|+|-+|...-. .+-.++++.+|+.+ .+++.+-++.+...
T Consensus 45 ~~~V~ITPT~~ev~~l~~a------------GadIIAlDaT~R~Rp~~l~~li~~i~~~~------~l~MADist~ee~~ 106 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA------------GADIIALDATDRPRPETLEELIREIKEKY------QLVMADISTLEEAI 106 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC------------T-SEEEEE-SSSS-SS-HHHHHHHHHHCT------SEEEEE-SSHHHHH
T ss_pred CCCeEECCCHHHHHHHHHc------------CCCEEEEecCCCCCCcCHHHHHHHHHHhC------cEEeeecCCHHHHH
Confidence 3567777888888777642 3669999985522 66778889998842 67788888999999
Q ss_pred HHHHhCCC
Q 046192 110 RCLEEGAE 117 (187)
Q Consensus 110 ~a~~~ga~ 117 (187)
.|.++|+|
T Consensus 107 ~A~~~G~D 114 (192)
T PF04131_consen 107 NAAELGFD 114 (192)
T ss_dssp HHHHTT-S
T ss_pred HHHHcCCC
Confidence 99999976
No 461
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=42.67 E-value=1.5e+02 Score=26.93 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=27.4
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
...+|+|||...-.-..+.+.|++.|+.+..+.
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~ 547 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLR 547 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEE
Confidence 357899999987778899999999998877654
No 462
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.58 E-value=74 Score=25.87 Aligned_cols=43 Identities=14% Similarity=0.309 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHH----HHHhCCC--ceeeC
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINR----CLEEGAE--EFFLK 122 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~----a~~~ga~--~yl~k 122 (187)
+.++..++.....++|+|++|+..+.+...+ |.++|+. +|++=
T Consensus 229 eA~~~f~~~~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fnGvL~G 277 (329)
T PRK04161 229 EAIKAFKDQEAATHLPYIYLSAGVSAKLFQETLVFAAEAGAQFNGVLCG 277 (329)
T ss_pred HHHHHHHHHhcccCCCEEEEcCCCCHHHHHHHHHHHHhcCCCcccEEee
Confidence 5556665544445899999999988877665 5567887 88763
No 463
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=42.45 E-value=1e+02 Score=25.31 Aligned_cols=69 Identities=10% Similarity=0.141 Sum_probs=45.7
Q ss_pred cEEEEeccCCC-CCHHHHHHHHHhhcCCCCCcEEEE-eCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 65 NLIITDYCMPG-MTGYDLLRKIKESASLKDIPVVIM-SSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 65 dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~~iI~l-s~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+.+|++..-+. ..-=.++..+ .. ...++.. .+..+.......++.|+++.+++|-++.++.+....+-.
T Consensus 90 ~~viv~~~dW~iIPlEnlIA~~-~~----~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~~ 160 (344)
T PRK02290 90 DYVIVEGRDWTIIPLENLIADL-GQ----SGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIEE 160 (344)
T ss_pred CEEEEECCCCcEecHHHHHhhh-cC----CceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHhc
Confidence 56777665443 2332355555 22 4455544 344556667778899999999999999999887766654
No 464
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=42.26 E-value=1.3e+02 Score=25.11 Aligned_cols=65 Identities=9% Similarity=0.178 Sum_probs=45.3
Q ss_pred cEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 65 dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
|++++-.. ...-|..+++.+.. .+|||....... .+.+..|.++|+..|-+++++..++..++..
T Consensus 342 Dv~v~pS~-~E~fg~~~lEAma~-----G~PvV~s~~gg~----~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 342 GIFVNPAL-TEPFGLTLLEAAAC-----GLPIVATDDGGP----RDIIANCRNGLLVDVLDLEAIASALEDALSD 406 (439)
T ss_pred CEEecccc-cCCcccHHHHHHHh-----CCCEEEeCCCCc----HHHhcCCCcEEEeCCCCHHHHHHHHHHHHhC
Confidence 56655332 24456677777765 778876554333 3445667889999999999999999888754
No 465
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=42.19 E-value=99 Score=23.11 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=27.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNK 43 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~ 43 (187)
++|.|||---=....+.+.|++.|+ .+....+.++
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~ 38 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDA 38 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHH
Confidence 4889999877777888999999888 6777766655
No 466
>PLN02366 spermidine synthase
Probab=42.04 E-value=1.8e+02 Score=23.34 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=40.3
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhC-----CceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC-----
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTS-----SYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT----- 77 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~-----~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~----- 77 (187)
.+|.+||=|+.+.+..++.+... +-.+.. ..++.+.++.. ....+|+|++|..-|...
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----------~~~~yDvIi~D~~dp~~~~~~L~ 184 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----------PEGTYDAIIVDSSDPVGPAQELF 184 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----------cCCCCCEEEEcCCCCCCchhhhh
Confidence 46777787777776666666431 112332 34444443322 124699999998766432
Q ss_pred HHHHHHHHHhhcC
Q 046192 78 GYDLLRKIKESAS 90 (187)
Q Consensus 78 g~~~~~~l~~~~~ 90 (187)
..++.+.+++...
T Consensus 185 t~ef~~~~~~~L~ 197 (308)
T PLN02366 185 EKPFFESVARALR 197 (308)
T ss_pred HHHHHHHHHHhcC
Confidence 2356777766543
No 467
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=42.02 E-value=1.4e+02 Score=21.98 Aligned_cols=103 Identities=20% Similarity=0.323 Sum_probs=67.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEE-------EeCCHHHHHHHHhc-cCccccc------------------------
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVT-------AVDSGNKALEFLGL-LNEDEQT------------------------ 57 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~-------~~~~~~~a~~~l~~-~~~~~~~------------------------ 57 (187)
-|.+++.+-.....+...+++.|-.+. ..++.+.+.+.+.. .+||+=+
T Consensus 26 ~vflL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdGIISTk~~~i~~Akk~~~~aIqR~Fil 105 (181)
T COG1954 26 YVFLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLSNDEVAIEFIKEVIKPDGIISTKSNVIKKAKKLGILAIQRLFIL 105 (181)
T ss_pred EEEEEechhhhHHHHHHHHHhCCcEEEEEeHHhcccCCchHHHHHHHHhccCCeeEEccHHHHHHHHHcCCceeeeeeee
Confidence 467888888888999999988763222 25677778887754 4466544
Q ss_pred ----------ccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 58 ----------NSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 58 ----------~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
++....||+|= -||| -...+++++.+.. +.|||.=.--...+.+..|+++||-..
T Consensus 106 DS~Al~~~~~~i~~~~pD~iE---vLPG-v~Pkvi~~i~~~t---~~piIAGGLi~t~Eev~~Al~aGA~av 170 (181)
T COG1954 106 DSIALEKGIKQIEKSEPDFIE---VLPG-VMPKVIKEITEKT---HIPIIAGGLIETEEEVREALKAGAVAV 170 (181)
T ss_pred cHHHHHHHHHHHHHcCCCEEE---EcCc-ccHHHHHHHHHhc---CCCEEeccccccHHHHHHHHHhCcEEE
Confidence 22223344331 1455 4456778887765 678876555568899999999998643
No 468
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=41.91 E-value=1.4e+02 Score=21.87 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=34.9
Q ss_pred ccEEEEeccCCCCCH-------HHHHHHHHhhcC--CCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 64 VNLIITDYCMPGMTG-------YDLLRKIKESAS--LKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g-------~~~~~~l~~~~~--~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+|.++++...|+.+| .+.++.+++..+ .++.|+++... -+.+.+.++.+.|++.++.
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GG-I~~env~~~~~~gad~iiv 193 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG-INLETIPLLAEAGADVLVA 193 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEE
Confidence 567777765555333 344555554321 11367765554 4568888999999998765
No 469
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.83 E-value=2.1e+02 Score=23.93 Aligned_cols=104 Identities=11% Similarity=0.049 Sum_probs=59.0
Q ss_pred ceEEEEEeCCHHHHH---HHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CCHH---H
Q 046192 8 QFHVLAVDDSIIDRK---LIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MTGY---D 80 (187)
Q Consensus 8 ~~~ilivd~~~~~~~---~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~---~ 80 (187)
..+|.++.-|+.... .+..+.+..|..+..+.+..+....+... ..+|+|++|.---. .+.. +
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~----------~~~DlVLIDTaGr~~~~~~~l~e 275 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS----------KDFDLVLVDTIGKSPKDFMKLAE 275 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh----------CCCCEEEEcCCCCCccCHHHHHH
Confidence 467888888874332 34444444567677777776666655322 34789999984322 2332 2
Q ss_pred HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHh----CCCcee-eC
Q 046192 81 LLRKIKESASLKDIPVVIMSSENIPSRINRCLEE----GAEEFF-LK 122 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~----ga~~yl-~k 122 (187)
+.+.+....+ +.-.++++++........+.+.. |.++++ +|
T Consensus 276 l~~~l~~~~~-~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TK 321 (388)
T PRK12723 276 MKELLNACGR-DAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTK 321 (388)
T ss_pred HHHHHHhcCC-CCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEe
Confidence 3333343332 12457778877666666555443 466664 44
No 470
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=41.80 E-value=1.8e+02 Score=23.21 Aligned_cols=66 Identities=9% Similarity=0.193 Sum_probs=38.7
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCC----CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSE----NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~----~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
.|++++.. .+..+++.+.. ..|+|++... .+.....+.+..+-.+++..|-+ ++.|.+++..++
T Consensus 253 ~d~~i~~~-----g~~~~~Ea~~~-----g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll 322 (357)
T PRK00726 253 ADLVICRA-----GASTVAELAAA-----GLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELL 322 (357)
T ss_pred CCEEEECC-----CHHHHHHHHHh-----CCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHH
Confidence 45776521 13445566554 7789887542 12222233333334577776655 899999999888
Q ss_pred hh
Q 046192 138 KG 139 (187)
Q Consensus 138 ~~ 139 (187)
..
T Consensus 323 ~~ 324 (357)
T PRK00726 323 SD 324 (357)
T ss_pred cC
Confidence 65
No 471
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=41.69 E-value=1.8e+02 Score=23.09 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=49.2
Q ss_pred CceEEEEEeCCHHHH-HHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccC--CCC-----CH
Q 046192 7 SQFHVLAVDDSIIDR-KLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM--PGM-----TG 78 (187)
Q Consensus 7 ~~~~ilivd~~~~~~-~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~--~~~-----~g 78 (187)
.+++|.+.|..|... ..+.+.|.+.|+.+....+..-+. .+. .+|.|++..+- .++ -|
T Consensus 134 k~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~~-~m~-------------~vd~VivGAD~I~~nG~v~NKiG 199 (275)
T PRK08335 134 KRFKVILTESAPDYEGLALANELEFLGIEFEVITDAQLGL-FAK-------------EATLALVGADNVTRDGYVVNKAG 199 (275)
T ss_pred CceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHHHH-HHH-------------hCCEEEECccEEecCCCEeehhh
Confidence 458899999888654 567888888898888765554332 221 25677775533 222 23
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
--.+..+-+.+ ++|+++++..
T Consensus 200 T~~lA~~Ak~~---~vPfyV~a~~ 220 (275)
T PRK08335 200 TYLLALACHDN---GVPFYVAAET 220 (275)
T ss_pred HHHHHHHHHHc---CCCEEEECcc
Confidence 33344444433 8899998664
No 472
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=41.64 E-value=2.1e+02 Score=24.06 Aligned_cols=95 Identities=13% Similarity=0.220 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhC-CceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC----HHHHH---HHHHhhc
Q 046192 18 IIDRKLIERLLKTS-SYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT----GYDLL---RKIKESA 89 (187)
Q Consensus 18 ~~~~~~l~~~l~~~-~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~----g~~~~---~~l~~~~ 89 (187)
....+.+...|... ||.++.- ....|+++++...--.. ....+ +.+++.+
T Consensus 13 ~~dse~~~~~l~~~~G~~~~~~----------------------~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~~~ 70 (438)
T TIGR01574 13 VRDSEHMAALLTAKEGYALTED----------------------AKEADVLLINTCSVREKAEHKVFGELGGFKKLKKKN 70 (438)
T ss_pred HHHHHHHHHHHHhcCCcEECCC----------------------cccCCEEEEeccCeechHHHHHHHHHHHHHHHHhhC
Confidence 34456677777777 7765431 11357999998765432 23333 3334444
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHH-hCCCceeeCCCChHHHHHHHHHHh
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLE-EGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~-~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
| ..+|++........ ..+... ..--|++.-+-+...+.+.+....
T Consensus 71 ~--~~~ivv~GC~a~~~-~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~ 116 (438)
T TIGR01574 71 P--DLIIGVCGCMASHL-GNEIFQRAPYVDFVFGTRNIHRLPQAIKTPL 116 (438)
T ss_pred C--CcEEEEeCcccccc-HHHHHhcCCCCcEEECCCCHHHHHHHHHHHh
Confidence 3 55555554443332 222222 233345566777777777776654
No 473
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.59 E-value=77 Score=25.72 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHH----HHHhCC--CceeeC
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINR----CLEEGA--EEFFLK 122 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~----a~~~ga--~~yl~k 122 (187)
+.++..++.....++|+|++|+..+.+...+ |.++|+ ++|++=
T Consensus 227 eA~~~f~~~~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~G 275 (324)
T PRK12399 227 EAAQHFKEQDAATHLPYIYLSAGVSAELFQETLVFAHEAGAKFNGVLCG 275 (324)
T ss_pred HHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEee
Confidence 3444454444334899999999988877665 556788 688763
No 474
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=41.56 E-value=1.8e+02 Score=23.32 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=51.0
Q ss_pred CceEEEEEeCCHHHH--HHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccC--CC-----CC
Q 046192 7 SQFHVLAVDDSIIDR--KLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM--PG-----MT 77 (187)
Q Consensus 7 ~~~~ilivd~~~~~~--~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~--~~-----~~ 77 (187)
.+++|.+.|..|... ..+...|.+.|+.+....+..-+ ..+ ....+|.|++..+. .+ .-
T Consensus 151 ~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~-~~m-----------~~~~vd~VlvGAd~v~~nG~v~nk~ 218 (303)
T TIGR00524 151 KRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAA-YFM-----------QKGEIDAVIVGADRIARNGDVANKI 218 (303)
T ss_pred CceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHH-HHc-----------cccCCCEEEEcccEEecCCCEeEhh
Confidence 468898888888753 34577888889888877654333 222 22346788775543 22 23
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
|--.+..+-+.+ ++|+++++..
T Consensus 219 GT~~lA~~Ak~~---~vPv~V~a~s 240 (303)
T TIGR00524 219 GTYQLAVLAKEF---RIPFFVAAPL 240 (303)
T ss_pred hHHHHHHHHHHh---CCCEEEeccc
Confidence 444555554443 7899998875
No 475
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.42 E-value=2.1e+02 Score=23.96 Aligned_cols=92 Identities=13% Similarity=0.233 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC----HH---HHHHHHHhhc
Q 046192 17 SIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT----GY---DLLRKIKESA 89 (187)
Q Consensus 17 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~----g~---~~~~~l~~~~ 89 (187)
+....+.+...|.+.||.++. +. ...|++|++...--.+ .. ..++.+++.+
T Consensus 14 N~~dse~~~~~l~~~G~~~~~--~~--------------------~~AD~viiNTC~v~~~a~~~~~~~i~~~~~~~~~~ 71 (418)
T PRK14336 14 NQAESERLGRLFELWGYSLAD--KA--------------------EDAELVLVNSCVVREHAENKVINRLHLLRKLKNKN 71 (418)
T ss_pred cHHHHHHHHHHHHHCcCEECC--Cc--------------------ccCCEEEEecccEecHHHHHHHHHHHHHHHHHhhC
Confidence 445566778888888886643 11 1246999998664332 22 2333444444
Q ss_pred CCCCCcEEEEeCCCChhHHHHHH-HhCCCceeeCCCChHHHHHHH
Q 046192 90 SLKDIPVVIMSSENIPSRINRCL-EEGAEEFFLKPVQLADVNKLK 133 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~-~~ga~~yl~kP~~~~~l~~~i 133 (187)
| ..+|++......... .+.. .....|++.-+-+..++.+.+
T Consensus 72 ~--~~~ivv~GC~~~~~~-~~l~~~~p~vd~v~g~~~~~~~~~~~ 113 (418)
T PRK14336 72 P--KLKIALTGCLVGQDI-SLIRKKFPFVDYIFGPGSMPDWREIP 113 (418)
T ss_pred C--CCEEEEECChhcCCH-HHHHhhCCCCcEEECCCCHHHHHHHH
Confidence 4 555665544433211 1222 233346777776666665554
No 476
>TIGR03541 reg_near_HchA LuxR family transcriptional regulatory, chaperone HchA-associated. Members of this protein family belong to the LuxR transcriptional regulator family, and contain both autoinducer binding (pfam03472) and transcriptional regulator (pfam00196) domains. Members, however, occur only in a few members of the Gammaproteobacteria that have the chaperone/aminopeptidase HchA, and are always encoded by the adjacent gene.
Probab=41.40 E-value=3.5 Score=31.50 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.5
Q ss_pred chhhhhhcccccccCCCCCCCccC
Q 046192 163 ADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 163 ~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
...++.+|.+++.+..+|+|++||
T Consensus 169 ~~~Lt~re~evl~~~a~G~t~~eI 192 (232)
T TIGR03541 169 AGVLSEREREVLAWTALGRRQADI 192 (232)
T ss_pred hccCCHHHHHHHHHHHCCCCHHHH
Confidence 346899999999999999999987
No 477
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=41.29 E-value=73 Score=25.10 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
+++++.+++.. ++|||....-.+.+.+.+++..||+..
T Consensus 220 ~~~i~~i~~~~---~ipii~~GGI~~~~da~~~l~~GAd~V 257 (296)
T cd04740 220 LRMVYQVYKAV---EIPIIGVGGIASGEDALEFLMAGASAV 257 (296)
T ss_pred HHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 47778887754 789999999889999999999998764
No 478
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=41.28 E-value=79 Score=29.07 Aligned_cols=74 Identities=12% Similarity=0.291 Sum_probs=48.6
Q ss_pred ccccEEEEec-cCCCCCHHH-HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 62 IQVNLIITDY-CMPGMTGYD-LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 62 ~~~dlvi~d~-~~~~~~g~~-~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
..+.++|+|- ++-...++. +++.|.+-. .++.+|+++.. ...+...+..-+.-|-.|+++.+++...+++++..
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP--~~v~FILaTtd--~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~ 193 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPP--PHVKFILATTD--PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE 193 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcC--CCeEEEEEECC--hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHH
Confidence 3567888885 222223333 566555433 37778877765 34455566666777888999999999888887754
No 479
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.27 E-value=1.7e+02 Score=22.83 Aligned_cols=98 Identities=12% Similarity=0.164 Sum_probs=59.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEE-e--CCHHHHHHHHhccCcccccccccccccEEEE-eccC-CC------CCHH
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTA-V--DSGNKALEFLGLLNEDEQTNSQVIQVNLIIT-DYCM-PG------MTGY 79 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~-~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~-d~~~-~~------~~g~ 79 (187)
++|.|=...-...+...+++.|...+. + ++..+-++.+....++ .|-+ ...- .+ .+..
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~g-----------fIY~vs~~GvTG~~~~~~~~~~ 189 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASG-----------FVYYVSRAGVTGARSADAADLA 189 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCC-----------cEEEEeCCCCCCcccCCCccHH
Confidence 455555555556667777778865544 2 3334556666544443 4432 2211 11 2345
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
+.++.+++.. +.|+++=..-.+.+.+.++... ||+.+.-.
T Consensus 190 ~~i~~vk~~~---~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 190 ELVARLKAHT---DLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHhcC---CCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 6888888854 7899876666678888888865 99987754
No 480
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=41.23 E-value=1.1e+02 Score=23.64 Aligned_cols=65 Identities=25% Similarity=0.556 Sum_probs=45.8
Q ss_pred EEEEeccCCC-CCHH--HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhC-CCc------eeeCCCChHHHHHHH
Q 046192 66 LIITDYCMPG-MTGY--DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEG-AEE------FFLKPVQLADVNKLK 133 (187)
Q Consensus 66 lvi~d~~~~~-~~g~--~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~g-a~~------yl~kP~~~~~l~~~i 133 (187)
+++...+-.+ .+|+ ++++.++..- ++|+|.-......+...++|..| |++ |..+-++..++.+.+
T Consensus 172 IlLtsmD~DGtk~GyDl~l~~~v~~~v---~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~evK~yL 246 (256)
T COG0107 172 ILLTSMDRDGTKAGYDLELTRAVREAV---NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEVKEYL 246 (256)
T ss_pred EEEeeecccccccCcCHHHHHHHHHhC---CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcccHHHHHHHH
Confidence 6666655554 3454 5777887754 89999999999999999999887 554 444555666655544
No 481
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=41.17 E-value=2.1e+02 Score=23.76 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=47.5
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCce-EEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQ-VTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~-v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
-+|..+|-++...+.+..-++..+.. +.. ..+....+... ...||+|.+|- ++ ....++...-
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~------------~~~fDvIdlDP--fG-s~~~fld~al 134 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR------------NRKFHVIDIDP--FG-TPAPFVDSAI 134 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh------------CCCCCEEEeCC--CC-CcHHHHHHHH
Confidence 46899999999999999998776643 332 23333333221 23588999986 33 3235665554
Q ss_pred hhcCCCCCcEEEEeCCC
Q 046192 87 ESASLKDIPVVIMSSEN 103 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~ 103 (187)
+... .-.++.+|+.+
T Consensus 135 ~~~~--~~glL~vTaTD 149 (374)
T TIGR00308 135 QASA--ERGLLLVTATD 149 (374)
T ss_pred Hhcc--cCCEEEEEecc
Confidence 4332 34577777543
No 482
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=41.14 E-value=1.6e+02 Score=22.52 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCceEEEeC--CHHHHHHHHhccCcccccccccccccEEEEeccCCC
Q 046192 19 IDRKLIERLLKTSSYQVTAVD--SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG 75 (187)
Q Consensus 19 ~~~~~l~~~l~~~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~ 75 (187)
...+.|.+.|++.||+|.... +..+..+.+...... ..+...|++++=+.-.|
T Consensus 30 ~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~----~~~~~~d~~v~~~~sHG 84 (241)
T smart00115 30 VDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAER----PEHSDSDSFVCVLLSHG 84 (241)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc----cccCCCCEEEEEEcCCC
Confidence 368899999999999998853 444444444332210 02335676666554443
No 483
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=41.13 E-value=1.1e+02 Score=22.05 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=24.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
|||+|.....-..+.+.|++.|+++....
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~ 29 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVR 29 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEe
Confidence 58888888888999999999998777643
No 484
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=41.06 E-value=1.8e+02 Score=23.13 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=58.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEE--eCC---HHHHHHHHhccCcccccccccccccEEEEeccCC--------
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTA--VDS---GNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-------- 74 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~--~~~---~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-------- 74 (187)
+-+||=+|.|+.....=-+.-++.|..+.. ++. ++...+.+... .||++++--+-.
T Consensus 105 PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~-----------~PDIlViTGHD~~~K~~~d~ 173 (287)
T PF05582_consen 105 PGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEY-----------RPDILVITGHDGYLKNKKDY 173 (287)
T ss_pred CCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHc-----------CCCEEEEeCchhhhcCCCCh
Confidence 568999999998776655555677766654 222 23344455444 455887754221
Q ss_pred -CCC----HH---HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 75 -GMT----GY---DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 75 -~~~----g~---~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
+.+ .- +.++..|+--| +.-=+++-+..-.......+++||+ |-+-|
T Consensus 174 ~dl~~YrnSkyFVeaV~~aR~~ep--~~D~LVIfAGACQS~fEall~AGAN-FASSP 227 (287)
T PF05582_consen 174 SDLNNYRNSKYFVEAVKEARKYEP--NLDDLVIFAGACQSHFEALLEAGAN-FASSP 227 (287)
T ss_pred hhhhhhhccHHHHHHHHHHHhcCC--CcccEEEEcchhHHHHHHHHHcCcc-ccCCc
Confidence 111 11 34445555444 4433334444567777888999987 44444
No 485
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.04 E-value=97 Score=29.03 Aligned_cols=74 Identities=14% Similarity=0.351 Sum_probs=47.9
Q ss_pred ccccEEEEe-ccCCCCCHHH-HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 62 IQVNLIITD-YCMPGMTGYD-LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 62 ~~~dlvi~d-~~~~~~~g~~-~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
..+.++|+| .++-..+..+ +++.|-+ .+ .++.+|+.+.. ...+...+..-+.-|-.+|++.+++...++++...
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEE-PP-~~vrFILaTTe--~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEE-PP-EHVKFLLATTD--PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhc-cC-CCeEEEEECCC--chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 356799998 4544444555 4444443 32 36667766553 33455566666778889999999999888876643
No 486
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=40.92 E-value=1.4e+02 Score=21.81 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=32.6
Q ss_pred ccEEEEeccCCCCC-------HHHHHHHHHhhcC--CCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 64 VNLIITDYCMPGMT-------GYDLLRKIKESAS--LKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 64 ~dlvi~d~~~~~~~-------g~~~~~~l~~~~~--~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+|.++++..-|+.+ +.+.++.+++... ....|+++.. .-+.+.+.++.+.|++.++.
T Consensus 127 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~G-GI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 127 VDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDG-GVNDDNARELAEAGADILVA 192 (210)
T ss_pred CCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC-CcCHHHHHHHHHcCCCEEEE
Confidence 45776665444333 3344445544321 0135665444 44678888889999997754
No 487
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=40.88 E-value=1.8e+02 Score=22.84 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=0.0
Q ss_pred eEEEEEeCCHH------HHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHH
Q 046192 9 FHVLAVDDSII------DRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDL 81 (187)
Q Consensus 9 ~~ilivd~~~~------~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 81 (187)
++|+++..... ....+...|.+.|++|.. +.++......+...+|| +|.+.......-....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~d-----------iih~~~~~~~~~~~~~ 69 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEIINAD-----------IVHLHWIHGGFLSIED 69 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhcccCC-----------EEEEEccccCccCHHH
Q ss_pred HHHHHhhcCCCCCcEEEE
Q 046192 82 LRKIKESASLKDIPVVIM 99 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~l 99 (187)
+..+. . ..|+|+.
T Consensus 70 ~~~~~---~--~~~~v~~ 82 (365)
T cd03825 70 LSKLL---D--RKPVVWT 82 (365)
T ss_pred HHHHH---c--CCCEEEE
No 488
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=40.88 E-value=63 Score=28.17 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=26.9
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
.+|||||....+-..+.+.|+..|+.+..+.
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~ 32 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYR 32 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 4799999999999999999999887776654
No 489
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=40.83 E-value=1.5e+02 Score=21.98 Aligned_cols=58 Identities=17% Similarity=0.374 Sum_probs=33.4
Q ss_pred ccEEEEeccCCCCC-------HHHHHHHHHhhcCCCCC-cEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 64 VNLIITDYCMPGMT-------GYDLLRKIKESASLKDI-PVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 64 ~dlvi~d~~~~~~~-------g~~~~~~l~~~~~~~~~-~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+|.+.++..-|+.+ +.+.++.+++..+...+ +.|.+...-+.+.+..+...|++.++.
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvv 197 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVA 197 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 56676766445443 33444445443221112 455565666778888888899996643
No 490
>PLN02522 ATP citrate (pro-S)-lyase
Probab=40.61 E-value=2.7e+02 Score=24.89 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=74.0
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCc--e-EEEe-------CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSY--Q-VTAV-------DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~--~-v~~~-------~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
=+|-+|...-.....+...+.+.|+ . ++.. .+..+.++.+. .| ...+.|++=......++
T Consensus 168 G~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~---~D-------p~Tk~IvlygEiGg~~e 237 (608)
T PLN02522 168 GSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFN---NI-------PQIKMIVVLGELGGRDE 237 (608)
T ss_pred CcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHh---cC-------CCCCEEEEEEecCchhH
Confidence 4588999988888888888877653 2 2222 12445555542 22 23558888888788899
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCCh-----------------------hHHHHHH-HhCCCceeeCCCChHHHHHHHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIP-----------------------SRINRCL-EEGAEEFFLKPVQLADVNKLKP 134 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~-----------------------~~~~~a~-~~ga~~yl~kP~~~~~l~~~i~ 134 (187)
.++++.+++... ..|||++...... .....++ ++| +..+-++++|.+.++
T Consensus 238 ~~f~ea~~~a~~--~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aG----v~vv~s~~El~~~~~ 311 (608)
T PLN02522 238 YSLVEALKQGKV--SKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAG----AIVPTSFEALEAAIK 311 (608)
T ss_pred HHHHHHHHHhcC--CCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCC----CeEeCCHHHHHHHHH
Confidence 999999988653 6788887543322 1122232 223 334568889888888
Q ss_pred HHhhhh
Q 046192 135 HLMKGI 140 (187)
Q Consensus 135 ~~~~~~ 140 (187)
.++...
T Consensus 312 ~~~~~~ 317 (608)
T PLN02522 312 ETFEKL 317 (608)
T ss_pred HHHHHH
Confidence 877664
No 491
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=40.60 E-value=1.6e+02 Score=22.39 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=40.9
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.|+++.-... ..-|..+++.+.. ++|+|.. ... ...+.+..|..+|+..|-+.+.+...+..+..
T Consensus 264 ~d~~i~ps~~-e~~~~~~~Ea~~~-----G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~ 328 (353)
T cd03811 264 ADLFVLSSRY-EGFPNVLLEAMAL-----GTPVVAT-DCP---GPREILEDGENGLLVPVGDEAALAAAALALLD 328 (353)
T ss_pred CCEEEeCccc-CCCCcHHHHHHHh-----CCCEEEc-CCC---ChHHHhcCCCceEEECCCCHHHHHHHHHHHHh
Confidence 4566654433 3446667777654 7788753 222 34456777889999999888888555554443
No 492
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=40.14 E-value=74 Score=24.18 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=38.6
Q ss_pred cccEEEEeccC----C--CCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 63 QVNLIITDYCM----P--GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 63 ~~dlvi~d~~~----~--~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
.+|.|.+.--. + ..-|.++++++.+.. .+||+.+..- +.+.+..+...||+++
T Consensus 131 gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~---~iPvvAIGGI-~~~n~~~~~~~GA~gi 189 (221)
T PRK06512 131 RPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI---EIPCIVQAGS-DLASAVEVAETGAEFV 189 (221)
T ss_pred CCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC---CCCEEEEeCC-CHHHHHHHHHhCCCEE
Confidence 35677665432 1 124788888877653 7999999875 6888899999999986
No 493
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=40.14 E-value=1.7e+02 Score=22.40 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCceEEEeC--CHHHHHHHHhccCcccccccccccccEEEEeccCCC
Q 046192 19 IDRKLIERLLKTSSYQVTAVD--SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG 75 (187)
Q Consensus 19 ~~~~~l~~~l~~~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~ 75 (187)
.....|.+.|++.||+|.... +..+..+.+...... .+...|++++=+.-.|
T Consensus 32 ~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~~-----~~~~~d~~v~~~~sHG 85 (243)
T cd00032 32 VDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFASP-----DHSDSDSFVCVILSHG 85 (243)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHhc-----cCCCCCeeEEEECCCC
Confidence 346889999999999998753 445555555443211 2345666555554443
No 494
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.84 E-value=2e+02 Score=23.09 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=51.9
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHh---CCceEEEe-----CCHHHHHHHHhccCcccccccccccccEEEEeccCC-CCC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKT---SSYQVTAV-----DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GMT 77 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~---~~~~v~~~-----~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~ 77 (187)
..+-+++++|++.+...++...+. .|+.+... .+.++..+.+...+.| ..+|-+++-.-+| +.+
T Consensus 33 p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d-------~~V~GIlvq~Plp~~~~ 105 (296)
T PRK14188 33 PGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD-------PAIHGILVQLPLPKHLD 105 (296)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC-------CCCcEEEEeCCCCCCCC
Confidence 457789999999998888877754 57765543 3666788888776654 4578888888887 456
Q ss_pred HHHHHHHHHh
Q 046192 78 GYDLLRKIKE 87 (187)
Q Consensus 78 g~~~~~~l~~ 87 (187)
-..+++.|.-
T Consensus 106 ~~~i~~~I~p 115 (296)
T PRK14188 106 SEAVIQAIDP 115 (296)
T ss_pred HHHHHhccCc
Confidence 5555555543
No 495
>PRK10307 putative glycosyl transferase; Provisional
Probab=39.78 E-value=2.1e+02 Score=23.41 Aligned_cols=108 Identities=10% Similarity=0.131 Sum_probs=60.5
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc-eEEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH----HH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY-QVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG----YD 80 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~-~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g----~~ 80 (187)
..+++|+++.+. +..+.+..+..+. .|... -+.++..+.+. ..|+.++-.. .+..+ ..
T Consensus 259 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~-------------~aDi~v~ps~-~e~~~~~~p~k 323 (412)
T PRK10307 259 DLIFVICGQGGG-KARLEKMAQCRGLPNVHFLPLQPYDRLPALLK-------------MADCHLLPQK-AGAADLVLPSK 323 (412)
T ss_pred CeEEEEECCChh-HHHHHHHHHHcCCCceEEeCCCCHHHHHHHHH-------------hcCEeEEeec-cCcccccCcHH
Confidence 477888887663 4556666665543 23332 23455555552 2446555333 22222 22
Q ss_pred HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 81 LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+.+.+.. .+|||....... ...+... + ++++..|.+.++|.+++..+...
T Consensus 324 l~eama~-----G~PVi~s~~~g~--~~~~~i~-~-~G~~~~~~d~~~la~~i~~l~~~ 373 (412)
T PRK10307 324 LTNMLAS-----GRNVVATAEPGT--ELGQLVE-G-IGVCVEPESVEALVAAIAALARQ 373 (412)
T ss_pred HHHHHHc-----CCCEEEEeCCCc--hHHHHHh-C-CcEEeCCCCHHHHHHHHHHHHhC
Confidence 3333332 788986654322 1112223 3 78999999999999999888754
No 496
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.67 E-value=2e+02 Score=23.03 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=53.2
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHh---CCceEEE--e---CCHHHHHHHHhccCcccccccccccccEEEEeccCC-CCC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKT---SSYQVTA--V---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GMT 77 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~---~~~~v~~--~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~ 77 (187)
+.+-++.++|++.+....+...+. .|+.+.. + .+.++.++.+...+.| ..+|=+++-.-+| +.+
T Consensus 33 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D-------~~V~GIlvqlPLP~~id 105 (288)
T PRK14171 33 PKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLD-------NEISGIIVQLPLPSSID 105 (288)
T ss_pred CeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC-------CCCCEEEEeCCCCCCCC
Confidence 457789999999999887777654 5765554 2 2556788888776654 4588899999888 467
Q ss_pred HHHHHHHHHh
Q 046192 78 GYDLLRKIKE 87 (187)
Q Consensus 78 g~~~~~~l~~ 87 (187)
-..+++.|..
T Consensus 106 ~~~i~~~I~p 115 (288)
T PRK14171 106 KNKILSAVSP 115 (288)
T ss_pred HHHHHhccCc
Confidence 6667766644
No 497
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=39.63 E-value=2.3e+02 Score=23.79 Aligned_cols=92 Identities=11% Similarity=0.154 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC----CCHHHHHHHHHhhcCCC
Q 046192 17 SIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG----MTGYDLLRKIKESASLK 92 (187)
Q Consensus 17 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~----~~g~~~~~~l~~~~~~~ 92 (187)
+....+.+...|.+.||.++. +. ...|+|+++...-- ....+.++++++.
T Consensus 12 N~~ds~~~~~~l~~~g~~~~~--~~--------------------~~aD~viinTC~v~~~a~~~~~~~i~~~~~~---- 65 (430)
T TIGR01125 12 NLVDSEVMLGILREAGYEVTP--NY--------------------EDADYVIVNTCGFIEDARQESIDTIGELADA---- 65 (430)
T ss_pred cHHHHHHHHHHHHHCcCEECC--Cc--------------------ccCCEEEEeCCCccchHHHHHHHHHHHHHhc----
Confidence 344456777788777876543 11 13579999964332 2356677777654
Q ss_pred CCcEEEEeCCCChhHHHHHHH-hCCCceeeCCCChHHHHHHHHH
Q 046192 93 DIPVVIMSSENIPSRINRCLE-EGAEEFFLKPVQLADVNKLKPH 135 (187)
Q Consensus 93 ~~~iI~ls~~~~~~~~~~a~~-~ga~~yl~kP~~~~~l~~~i~~ 135 (187)
..+||+-..... ..-.++.. ...-|++.-+-...++.+.+..
T Consensus 66 ~~~vvvgGc~a~-~~pee~~~~~~~vd~v~g~~~~~~l~~~~~~ 108 (430)
T TIGR01125 66 GKKVIVTGCLVQ-RYKEELKEEIPEVHAITGSGDVENILNAIES 108 (430)
T ss_pred CCCEEEECCccc-cchHHHHhhCCCCcEEECCCCHHHHHHHHHH
Confidence 345555443322 12223333 3223456666667666665544
No 498
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=39.52 E-value=2e+02 Score=23.13 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhCCceEEEeC
Q 046192 19 IDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 19 ~~~~~l~~~l~~~~~~v~~~~ 39 (187)
.....+...+.+.||.+..+.
T Consensus 75 ~i~~gi~~~~~~~gy~~~l~~ 95 (333)
T COG1609 75 EILKGIEEAAREAGYSLLLAN 95 (333)
T ss_pred HHHHHHHHHHHHcCCEEEEEC
Confidence 344566666667787777643
No 499
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=39.34 E-value=1.9e+02 Score=22.89 Aligned_cols=84 Identities=24% Similarity=0.309 Sum_probs=50.5
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC--CHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM--TGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~--~g~~~~~~l~ 86 (187)
..++.+||....+..|.++=-...+.-....+..+....+...- ....-=.++.|.-+|.. -|+.+++..+
T Consensus 31 ~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l-------~~g~~valVSDAG~P~ISDPG~~LV~~a~ 103 (275)
T COG0313 31 VDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLL-------KKGKSVALVSDAGTPLISDPGYELVRAAR 103 (275)
T ss_pred CCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHH-------hcCCeEEEEecCCCCcccCccHHHHHHHH
Confidence 45789999988887666553222211111234444444332110 11112278899999985 4999999999
Q ss_pred hhcCCCCCcEEEEeCCC
Q 046192 87 ESASLKDIPVVIMSSEN 103 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~ 103 (187)
+. +++|+.+.+.+
T Consensus 104 ~~----gi~V~~lPG~s 116 (275)
T COG0313 104 EA----GIRVVPLPGPS 116 (275)
T ss_pred Hc----CCcEEecCCcc
Confidence 86 67888887753
No 500
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=39.21 E-value=32 Score=25.32 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=33.4
Q ss_pred CCceEEE------eCCHHHHHHHHhccCcccccccccccccEEEEeccCC-CC-----CHHHHHHHHHhhcCCCCCcEEE
Q 046192 31 SSYQVTA------VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GM-----TGYDLLRKIKESASLKDIPVVI 98 (187)
Q Consensus 31 ~~~~v~~------~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~-----~g~~~~~~l~~~~~~~~~~iI~ 98 (187)
.|+.++- +.-..+..+.+... +.|++++|+... .. .-..+++.||+.+| ++||++
T Consensus 32 l~~~~iNLGfsG~~~le~~~a~~ia~~-----------~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP--~tPIll 98 (178)
T PF14606_consen 32 LGLDVINLGFSGNGKLEPEVADLIAEI-----------DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHP--DTPILL 98 (178)
T ss_dssp HT-EEEEEE-TCCCS--HHHHHHHHHS-------------SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-S--SS-EEE
T ss_pred cCCCeEeeeecCccccCHHHHHHHhcC-----------CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCC--CCCEEE
Confidence 3666654 22334556666433 456999998432 11 23468889999998 999999
Q ss_pred EeCC
Q 046192 99 MSSE 102 (187)
Q Consensus 99 ls~~ 102 (187)
++..
T Consensus 99 v~~~ 102 (178)
T PF14606_consen 99 VSPI 102 (178)
T ss_dssp EE--
T ss_pred EecC
Confidence 9964
Done!