Query 046192
Match_columns 187
No_of_seqs 149 out of 1530
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 16:40:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 100.0 1.4E-29 4.7E-34 177.2 16.3 124 5-139 9-133 (134)
2 1a04_A Nitrate/nitrite respons 99.9 1E-25 3.4E-30 168.7 12.8 167 7-186 4-175 (215)
3 3q9s_A DNA-binding response re 99.9 3.8E-26 1.3E-30 175.3 10.7 166 7-186 36-207 (249)
4 3gl9_A Response regulator; bet 99.9 1.7E-24 6E-29 148.3 17.3 119 9-138 3-121 (122)
5 1yio_A Response regulatory pro 99.9 4E-26 1.4E-30 170.0 9.5 160 8-186 4-163 (208)
6 2lpm_A Two-component response 99.9 4.1E-27 1.4E-31 162.2 3.7 118 3-138 3-121 (123)
7 3r0j_A Possible two component 99.9 2.6E-25 8.7E-30 170.5 13.7 168 6-186 21-201 (250)
8 3t6k_A Response regulator rece 99.9 3.6E-24 1.2E-28 149.4 16.5 123 8-141 4-126 (136)
9 3gt7_A Sensor protein; structu 99.9 1.3E-23 4.5E-28 149.5 17.5 127 4-141 3-129 (154)
10 1kgs_A DRRD, DNA binding respo 99.9 4.6E-25 1.6E-29 166.0 9.5 165 9-186 3-176 (225)
11 3kto_A Response regulator rece 99.9 5.3E-24 1.8E-28 148.3 13.2 124 6-142 4-129 (136)
12 3klo_A Transcriptional regulat 99.9 8.3E-26 2.8E-30 170.6 4.3 171 3-186 2-180 (225)
13 3f6p_A Transcriptional regulat 99.9 2.1E-23 7.1E-28 142.4 15.6 117 9-139 3-119 (120)
14 1ys7_A Transcriptional regulat 99.9 7.7E-25 2.6E-29 165.6 8.6 168 6-186 5-184 (233)
15 3rqi_A Response regulator prot 99.9 8.2E-24 2.8E-28 155.0 13.7 122 7-141 6-127 (184)
16 3crn_A Response regulator rece 99.9 5.2E-23 1.8E-27 142.6 16.7 120 9-141 4-123 (132)
17 1dbw_A Transcriptional regulat 99.9 9.8E-23 3.4E-27 139.9 18.0 119 8-139 3-121 (126)
18 3h1g_A Chemotaxis protein CHEY 99.9 4.6E-23 1.6E-27 142.3 16.2 123 7-139 4-127 (129)
19 3cfy_A Putative LUXO repressor 99.9 3.5E-23 1.2E-27 144.5 15.4 122 9-143 5-126 (137)
20 3hdg_A Uncharacterized protein 99.9 3.3E-23 1.1E-27 144.1 15.1 126 5-143 4-129 (137)
21 3c3w_A Two component transcrip 99.9 2E-25 6.9E-30 168.6 4.1 165 9-186 2-170 (225)
22 2gwr_A DNA-binding response re 99.9 1.8E-24 6.1E-29 164.6 9.2 164 9-186 6-178 (238)
23 2r25_B Osmosensing histidine p 99.9 5.6E-23 1.9E-27 142.8 16.1 125 8-139 2-127 (133)
24 1srr_A SPO0F, sporulation resp 99.9 9.3E-23 3.2E-27 139.5 16.2 118 9-139 4-121 (124)
25 3hdv_A Response regulator; PSI 99.9 9E-23 3.1E-27 141.7 16.2 130 1-142 1-130 (136)
26 3jte_A Response regulator rece 99.9 1.6E-22 5.5E-27 141.6 17.5 125 8-143 3-127 (143)
27 3eod_A Protein HNR; response r 99.9 9.1E-23 3.1E-27 140.7 15.9 123 5-140 4-127 (130)
28 3cnb_A DNA-binding response re 99.9 1.2E-22 4E-27 141.9 16.6 131 1-142 1-133 (143)
29 3b2n_A Uncharacterized protein 99.9 9.3E-23 3.2E-27 141.5 15.9 121 9-142 4-126 (133)
30 3lua_A Response regulator rece 99.9 3.6E-23 1.2E-27 144.6 13.7 124 8-143 4-131 (140)
31 3grc_A Sensor protein, kinase; 99.9 2E-23 6.9E-28 145.7 12.4 127 5-142 3-130 (140)
32 3m6m_D Sensory/regulatory prot 99.9 1.4E-22 4.8E-27 142.5 16.7 122 7-139 13-136 (143)
33 1i3c_A Response regulator RCP1 99.9 2.3E-22 7.9E-27 142.2 17.6 135 1-139 1-137 (149)
34 2oqr_A Sensory transduction pr 99.9 7.6E-24 2.6E-28 159.9 10.5 164 9-186 5-181 (230)
35 3lte_A Response regulator; str 99.9 1.6E-22 5.5E-27 139.6 16.2 127 4-142 2-128 (132)
36 2pl1_A Transcriptional regulat 99.9 3.1E-22 1.1E-26 136.1 16.9 118 9-139 1-118 (121)
37 3hv2_A Response regulator/HD d 99.9 2.7E-22 9.4E-27 142.3 17.3 124 6-142 12-136 (153)
38 3kht_A Response regulator; PSI 99.9 2.5E-22 8.5E-27 140.9 16.8 125 6-141 3-130 (144)
39 3snk_A Response regulator CHEY 99.9 1.1E-23 3.8E-28 146.4 9.8 121 6-139 12-133 (135)
40 1p6q_A CHEY2; chemotaxis, sign 99.9 1.4E-22 4.9E-27 139.3 14.9 123 6-139 4-127 (129)
41 3f6c_A Positive transcription 99.9 8.7E-23 3E-27 141.3 13.4 122 9-143 2-124 (134)
42 3i42_A Response regulator rece 99.9 1.3E-22 4.3E-27 139.4 13.9 121 8-140 3-123 (127)
43 4e7p_A Response regulator; DNA 99.9 4.5E-22 1.5E-26 140.7 16.9 123 6-141 18-142 (150)
44 1tmy_A CHEY protein, TMY; chem 99.9 3.6E-22 1.2E-26 135.7 15.8 116 9-137 3-119 (120)
45 1xhf_A DYE resistance, aerobic 99.9 5.4E-22 1.8E-26 135.4 16.8 118 8-139 3-120 (123)
46 3heb_A Response regulator rece 99.9 5.3E-22 1.8E-26 140.6 17.2 132 8-141 4-137 (152)
47 1jbe_A Chemotaxis protein CHEY 99.9 7.8E-22 2.7E-26 135.5 17.3 122 7-139 3-125 (128)
48 2zay_A Response regulator rece 99.9 2.6E-22 8.9E-27 141.2 15.0 130 1-141 1-130 (147)
49 1zgz_A Torcad operon transcrip 99.9 8.5E-22 2.9E-26 134.2 16.8 117 9-139 3-119 (122)
50 3hzh_A Chemotaxis response reg 99.9 3.9E-22 1.3E-26 142.3 15.6 122 6-138 34-156 (157)
51 3nhm_A Response regulator; pro 99.9 2.4E-22 8.2E-27 138.9 13.9 122 8-142 4-125 (133)
52 3h5i_A Response regulator/sens 99.9 1.3E-22 4.4E-27 141.9 12.6 125 6-143 3-128 (140)
53 2qzj_A Two-component response 99.9 4.8E-22 1.6E-26 138.6 15.4 120 8-141 4-123 (136)
54 1mb3_A Cell division response 99.9 4.7E-22 1.6E-26 135.7 14.9 120 9-139 2-121 (124)
55 3luf_A Two-component system re 99.9 4E-22 1.4E-26 153.8 16.3 125 7-141 123-247 (259)
56 3ilh_A Two component response 99.9 9.8E-22 3.3E-26 137.7 16.8 129 6-142 7-142 (146)
57 2qxy_A Response regulator; reg 99.9 7.3E-22 2.5E-26 138.1 16.0 121 8-142 4-124 (142)
58 3c3m_A Response regulator rece 99.9 5.9E-22 2E-26 138.2 15.2 121 9-140 4-124 (138)
59 2rjn_A Response regulator rece 99.9 2E-21 6.7E-26 137.9 17.4 124 6-142 5-129 (154)
60 2a9o_A Response regulator; ess 99.9 1.5E-21 5.2E-26 132.3 16.0 117 9-139 2-118 (120)
61 3dzd_A Transcriptional regulat 99.9 1.2E-22 4.1E-27 164.2 12.3 119 10-141 2-120 (368)
62 1p2f_A Response regulator; DRR 99.9 4.8E-23 1.6E-27 154.6 9.3 162 9-186 3-170 (220)
63 2hqr_A Putative transcriptiona 99.9 8.8E-23 3E-27 153.5 10.2 161 9-186 1-168 (223)
64 3cz5_A Two-component response 99.9 1.7E-21 5.9E-26 138.0 16.4 123 6-141 3-127 (153)
65 1dcf_A ETR1 protein; beta-alph 99.9 2.2E-21 7.5E-26 134.8 16.5 123 5-139 4-129 (136)
66 2qr3_A Two-component system re 99.9 1.1E-21 3.7E-26 136.7 15.0 122 8-142 3-129 (140)
67 1mvo_A PHOP response regulator 99.9 1.6E-21 5.4E-26 135.3 15.7 120 8-140 3-122 (136)
68 3cg4_A Response regulator rece 99.9 2.8E-22 9.7E-27 140.1 11.5 130 1-142 1-130 (142)
69 3cg0_A Response regulator rece 99.9 1.7E-21 5.7E-26 135.7 15.2 123 6-142 7-131 (140)
70 3n53_A Response regulator rece 99.9 2.3E-22 7.8E-27 140.5 10.6 126 8-145 3-128 (140)
71 1dz3_A Stage 0 sporulation pro 99.9 1.6E-21 5.6E-26 134.4 14.8 119 9-139 3-123 (130)
72 3eul_A Possible nitrate/nitrit 99.9 2.6E-21 8.9E-26 137.0 16.1 125 6-143 13-139 (152)
73 1k68_A Phytochrome response re 99.9 5.1E-21 1.8E-25 132.8 17.2 129 8-140 2-132 (140)
74 1k66_A Phytochrome response re 99.9 3.7E-21 1.3E-25 135.1 16.5 133 5-140 3-139 (149)
75 4dad_A Putative pilus assembly 99.9 6E-22 2.1E-26 139.3 12.2 123 6-140 18-142 (146)
76 3kcn_A Adenylate cyclase homol 99.9 3E-21 1E-25 136.6 15.8 122 8-142 4-126 (151)
77 1zh2_A KDP operon transcriptio 99.9 2.6E-21 8.8E-26 131.4 14.9 117 9-139 2-118 (121)
78 2jba_A Phosphate regulon trans 99.9 4.3E-22 1.5E-26 136.5 10.6 120 9-139 3-122 (127)
79 2qvg_A Two component response 99.9 2.4E-21 8.1E-26 135.5 14.5 133 1-139 1-135 (143)
80 3a10_A Response regulator; pho 99.9 1.9E-21 6.5E-26 131.3 13.1 114 9-137 2-115 (116)
81 3mm4_A Histidine kinase homolo 99.9 4.1E-21 1.4E-25 143.3 15.9 130 7-140 60-197 (206)
82 3cu5_A Two component transcrip 99.9 2.3E-21 7.9E-26 135.8 13.6 120 9-141 3-125 (141)
83 3eq2_A Probable two-component 99.9 1.5E-21 5.2E-26 158.7 14.2 122 5-139 2-124 (394)
84 1qkk_A DCTD, C4-dicarboxylate 99.9 6.5E-21 2.2E-25 135.3 15.7 122 7-141 2-123 (155)
85 2ayx_A Sensor kinase protein R 99.9 3.8E-21 1.3E-25 147.9 15.3 122 7-141 128-249 (254)
86 2qsj_A DNA-binding response re 99.9 3.5E-21 1.2E-25 136.5 13.6 123 8-142 3-127 (154)
87 2qv0_A Protein MRKE; structura 99.9 7.7E-21 2.6E-25 133.0 15.0 127 1-142 1-130 (143)
88 2rdm_A Response regulator rece 99.9 9.9E-21 3.4E-25 130.5 15.2 123 6-142 3-126 (132)
89 3eqz_A Response regulator; str 99.9 1.6E-21 5.4E-26 134.9 10.7 121 8-142 3-128 (135)
90 3n0r_A Response regulator; sig 99.9 6.4E-22 2.2E-26 154.9 9.7 117 8-140 160-278 (286)
91 2jk1_A HUPR, hydrogenase trans 99.9 2.1E-20 7.4E-25 130.3 15.8 118 9-140 2-120 (139)
92 1s8n_A Putative antiterminator 99.9 6.9E-21 2.4E-25 141.4 13.2 120 8-141 13-133 (205)
93 2gkg_A Response regulator homo 99.9 1.1E-20 3.9E-25 128.9 12.9 118 9-138 6-124 (127)
94 1w25_A Stalked-cell differenti 99.8 2.6E-20 8.8E-25 154.1 16.0 121 9-140 2-122 (459)
95 1ny5_A Transcriptional regulat 99.8 2.2E-20 7.5E-25 151.9 15.0 119 9-140 1-119 (387)
96 3t8y_A CHEB, chemotaxis respon 99.8 7.3E-20 2.5E-24 131.5 15.7 122 4-139 21-155 (164)
97 3kyj_B CHEY6 protein, putative 99.8 3.9E-20 1.3E-24 129.8 12.8 113 6-131 11-127 (145)
98 3c97_A Signal transduction his 99.8 4.1E-20 1.4E-24 129.0 12.1 122 8-143 10-134 (140)
99 2j48_A Two-component sensor ki 99.8 8.2E-20 2.8E-24 122.9 13.2 116 9-138 2-117 (119)
100 3sy8_A ROCR; TIM barrel phosph 99.8 8.5E-21 2.9E-25 154.8 9.1 121 8-140 3-129 (400)
101 1dc7_A NTRC, nitrogen regulati 99.8 5.9E-22 2E-26 135.0 1.7 119 8-139 3-121 (124)
102 2pln_A HP1043, response regula 99.8 5.3E-19 1.8E-23 122.8 15.9 118 6-140 16-134 (137)
103 3bre_A Probable two-component 99.8 9.2E-20 3.2E-24 146.0 13.0 119 8-137 18-137 (358)
104 2b4a_A BH3024; flavodoxin-like 99.8 1.8E-19 6.3E-24 125.3 10.7 118 6-139 13-131 (138)
105 1qo0_D AMIR; binding protein, 99.8 4E-19 1.4E-23 131.0 11.2 116 7-140 11-126 (196)
106 1a2o_A CHEB methylesterase; ba 99.8 3.4E-17 1.1E-21 131.4 16.2 118 8-139 3-133 (349)
107 3luf_A Two-component system re 99.8 4.6E-18 1.6E-22 131.1 10.1 103 8-126 4-107 (259)
108 2vyc_A Biodegradative arginine 99.7 1.3E-17 4.3E-22 145.7 10.3 119 10-140 2-134 (755)
109 3cwo_X Beta/alpha-barrel prote 99.2 1.2E-11 3.9E-16 93.0 6.7 94 33-139 6-101 (237)
110 1w25_A Stalked-cell differenti 99.2 6.9E-10 2.4E-14 91.5 16.3 120 8-140 152-271 (459)
111 3n75_A LDC, lysine decarboxyla 97.8 4.6E-05 1.6E-09 66.1 6.8 105 20-139 18-123 (715)
112 3q7r_A Transcriptional regulat 97.7 5.8E-05 2E-09 48.5 4.7 107 8-139 12-118 (121)
113 2yxb_A Coenzyme B12-dependent 97.5 0.0074 2.5E-07 42.6 14.2 121 7-140 17-146 (161)
114 2ayx_A Sensor kinase protein R 97.5 0.0006 2E-08 51.6 8.9 95 8-138 11-105 (254)
115 3cwo_X Beta/alpha-barrel prote 96.6 0.0055 1.9E-07 45.0 6.8 67 64-133 145-220 (237)
116 1r8j_A KAIA; circadian clock p 96.0 0.12 4.3E-06 39.0 11.0 121 4-140 5-130 (289)
117 1ccw_A Protein (glutamate muta 95.9 0.2 6.7E-06 34.1 11.0 109 15-135 14-132 (137)
118 1y80_A Predicted cobalamin bin 95.8 0.11 3.8E-06 37.9 10.1 102 8-123 88-198 (210)
119 2i2x_B MTAC, methyltransferase 95.5 0.36 1.2E-05 36.5 12.3 112 8-138 123-243 (258)
120 3ezx_A MMCP 1, monomethylamine 95.4 0.12 4.2E-06 38.0 9.2 102 8-123 92-204 (215)
121 1wv2_A Thiazole moeity, thiazo 95.4 0.36 1.2E-05 36.5 11.6 100 23-137 126-236 (265)
122 1xrs_B D-lysine 5,6-aminomutas 94.3 0.84 2.9E-05 34.6 11.3 114 8-135 120-254 (262)
123 2xij_A Methylmalonyl-COA mutas 94.0 1.3 4.3E-05 38.8 13.0 119 8-139 604-731 (762)
124 3q58_A N-acetylmannosamine-6-p 93.4 1.4 4.9E-05 32.5 11.0 89 17-121 114-209 (229)
125 1req_A Methylmalonyl-COA mutas 93.2 1.3 4.5E-05 38.5 11.8 118 7-137 595-721 (727)
126 2htm_A Thiazole biosynthesis p 93.2 0.44 1.5E-05 36.2 7.8 99 25-137 117-227 (268)
127 3kp1_A D-ornithine aminomutase 92.6 1.4 4.9E-05 37.7 10.7 117 8-138 602-734 (763)
128 3igs_A N-acetylmannosamine-6-p 92.2 2.6 8.8E-05 31.2 11.0 88 18-121 115-209 (232)
129 3fkq_A NTRC-like two-domain pr 92.2 0.49 1.7E-05 37.6 7.5 105 6-137 19-126 (373)
130 4e38_A Keto-hydroxyglutarate-a 91.9 1.7 5.9E-05 32.3 9.6 98 24-135 27-125 (232)
131 3lab_A Putative KDPG (2-keto-3 91.7 3 0.0001 30.6 11.5 57 75-135 48-104 (217)
132 2gek_A Phosphatidylinositol ma 91.1 2.2 7.6E-05 33.3 10.2 108 8-139 240-349 (406)
133 2xci_A KDO-transferase, 3-deox 89.0 2.6 8.7E-05 33.3 9.0 111 8-139 225-346 (374)
134 2ekc_A AQ_1548, tryptophan syn 88.8 2.1 7.2E-05 32.3 8.0 58 78-137 81-144 (262)
135 3bul_A Methionine synthase; tr 88.5 5.2 0.00018 33.9 10.8 101 8-123 98-212 (579)
136 2bfw_A GLGA glycogen synthase; 88.0 5.1 0.00018 27.8 11.5 106 8-138 70-179 (200)
137 3s83_A Ggdef family protein; s 87.6 2 6.9E-05 31.9 7.2 100 24-135 144-254 (259)
138 3qz6_A HPCH/HPAI aldolase; str 87.0 6.8 0.00023 29.5 9.8 101 24-136 6-110 (261)
139 3qja_A IGPS, indole-3-glycerol 86.4 9.1 0.00031 29.0 11.7 89 20-121 150-241 (272)
140 3l9w_A Glutathione-regulated p 86.0 6.5 0.00022 31.7 9.8 54 63-121 68-121 (413)
141 3fwz_A Inner membrane protein 85.9 5.8 0.0002 26.3 9.9 107 9-121 8-124 (140)
142 3q2i_A Dehydrogenase; rossmann 85.8 3.8 0.00013 31.9 8.2 110 2-136 7-122 (354)
143 1geq_A Tryptophan synthase alp 85.6 4.3 0.00015 29.9 8.0 52 78-132 68-125 (248)
144 2q5c_A NTRC family transcripti 85.1 8.5 0.00029 27.5 9.4 44 8-51 4-48 (196)
145 3ioy_A Short-chain dehydrogena 84.9 4.5 0.00015 31.1 8.1 94 1-102 1-96 (319)
146 2iw1_A Lipopolysaccharide core 84.9 8.2 0.00028 29.5 9.7 107 8-139 228-337 (374)
147 1qv9_A F420-dependent methylen 84.2 2.2 7.5E-05 31.8 5.5 58 63-124 64-121 (283)
148 3ovp_A Ribulose-phosphate 3-ep 83.9 5.1 0.00018 29.5 7.7 56 63-121 134-196 (228)
149 3fro_A GLGA glycogen synthase; 83.9 14 0.00047 28.9 12.5 107 7-138 284-394 (439)
150 3vnd_A TSA, tryptophan synthas 83.8 1.6 5.6E-05 33.1 5.0 58 79-138 83-146 (267)
151 3nav_A Tryptophan synthase alp 83.8 2 6.8E-05 32.7 5.5 58 78-137 84-147 (271)
152 1qop_A Tryptophan synthase alp 83.7 1.6 5.5E-05 33.0 4.9 58 78-137 81-144 (268)
153 3rht_A (gatase1)-like protein; 83.3 0.93 3.2E-05 34.3 3.4 33 8-40 4-38 (259)
154 2iuy_A Avigt4, glycosyltransfe 83.0 6.3 0.00022 30.0 8.2 106 9-138 189-307 (342)
155 2f9f_A First mannosyl transfer 82.1 9.9 0.00034 26.0 9.6 107 8-139 50-162 (177)
156 3inp_A D-ribulose-phosphate 3- 81.5 6.8 0.00023 29.3 7.5 73 64-138 54-132 (246)
157 3c48_A Predicted glycosyltrans 80.8 13 0.00045 29.2 9.6 109 8-139 276-391 (438)
158 3e82_A Putative oxidoreductase 80.7 5.9 0.0002 31.1 7.4 109 1-137 1-115 (364)
159 1rzu_A Glycogen synthase 1; gl 80.5 20 0.0007 28.6 11.0 107 8-137 320-438 (485)
160 2qzs_A Glycogen synthase; glyc 80.5 18 0.00061 29.0 10.4 107 8-137 321-439 (485)
161 3m2t_A Probable dehydrogenase; 80.4 6.6 0.00022 30.8 7.6 107 7-137 4-116 (359)
162 3okp_A GDP-mannose-dependent a 80.4 6.8 0.00023 30.2 7.6 108 8-139 229-344 (394)
163 1xm3_A Thiazole biosynthesis p 80.3 10 0.00036 28.4 8.3 42 77-121 165-206 (264)
164 1ujp_A Tryptophan synthase alp 80.2 3.7 0.00013 31.2 5.8 70 64-136 43-140 (271)
165 3f4w_A Putative hexulose 6 pho 79.8 14 0.00048 26.3 9.6 86 22-121 93-186 (211)
166 3l0g_A Nicotinate-nucleotide p 79.4 8.1 0.00028 29.8 7.4 55 79-137 195-249 (300)
167 2r60_A Glycosyl transferase, g 78.9 22 0.00075 28.6 10.5 100 21-139 321-424 (499)
168 3tqv_A Nicotinate-nucleotide p 78.7 5.8 0.0002 30.4 6.4 70 64-137 169-240 (287)
169 1rd5_A Tryptophan synthase alp 77.9 11 0.00039 27.9 7.9 42 78-122 189-230 (262)
170 4eso_A Putative oxidoreductase 77.5 13 0.00045 27.3 8.1 89 1-101 1-90 (255)
171 1vgv_A UDP-N-acetylglucosamine 76.8 23 0.00079 27.2 9.8 42 93-139 301-342 (384)
172 1h1y_A D-ribulose-5-phosphate 76.7 17 0.00059 26.4 8.5 56 63-121 138-200 (228)
173 3tsm_A IGPS, indole-3-glycerol 76.6 22 0.00076 26.9 11.1 103 21-139 158-268 (272)
174 2jjm_A Glycosyl transferase, g 76.5 8.8 0.0003 29.8 7.2 66 64-139 285-350 (394)
175 3llv_A Exopolyphosphatase-rela 76.5 13 0.00046 24.3 9.8 108 8-123 6-123 (141)
176 3ajx_A 3-hexulose-6-phosphate 76.3 3.2 0.00011 29.7 4.3 58 77-136 39-99 (207)
177 1wa3_A 2-keto-3-deoxy-6-phosph 76.2 18 0.00061 25.6 10.7 84 38-134 18-101 (205)
178 3rc1_A Sugar 3-ketoreductase; 75.7 9.1 0.00031 29.8 7.1 107 4-137 23-137 (350)
179 3paj_A Nicotinate-nucleotide p 74.7 13 0.00043 29.0 7.4 54 79-136 219-272 (320)
180 3ulq_B Transcriptional regulat 74.0 0.15 5E-06 32.1 -3.1 26 161-186 25-50 (90)
181 1yad_A Regulatory protein TENI 73.7 22 0.00076 25.5 10.6 74 32-121 110-191 (221)
182 2z6i_A Trans-2-enoyl-ACP reduc 73.6 29 0.001 26.8 10.1 53 64-119 131-188 (332)
183 3edm_A Short chain dehydrogena 73.3 20 0.00068 26.3 8.2 88 1-101 1-94 (259)
184 3u3x_A Oxidoreductase; structu 73.2 12 0.0004 29.4 7.1 107 7-137 25-136 (361)
185 1geq_A Tryptophan synthase alp 72.3 26 0.00088 25.6 9.8 42 78-122 179-220 (248)
186 2gjl_A Hypothetical protein PA 72.1 31 0.0011 26.5 12.1 80 26-120 112-199 (328)
187 2v5j_A 2,4-dihydroxyhept-2-ENE 72.0 30 0.001 26.3 12.7 101 24-136 30-133 (287)
188 4fxs_A Inosine-5'-monophosphat 71.5 11 0.00038 31.1 6.8 56 63-121 243-299 (496)
189 1ka9_F Imidazole glycerol phos 70.9 21 0.00072 26.1 7.8 53 66-121 48-103 (252)
190 1zh8_A Oxidoreductase; TM0312, 70.8 29 0.00098 26.8 8.8 110 4-137 14-130 (340)
191 3bo9_A Putative nitroalkan dio 70.7 34 0.0012 26.4 11.3 80 26-120 118-203 (326)
192 1qop_A Tryptophan synthase alp 70.7 31 0.001 25.8 9.4 41 79-122 194-234 (268)
193 3oy2_A Glycosyltransferase B73 70.2 31 0.0011 26.8 9.1 108 8-139 215-355 (413)
194 2oo3_A Protein involved in cat 70.1 11 0.00039 28.7 6.1 69 9-87 114-184 (283)
195 3l4e_A Uncharacterized peptida 69.8 28 0.00096 25.0 8.7 63 8-87 27-99 (206)
196 3qhp_A Type 1 capsular polysac 69.7 21 0.00073 23.6 11.4 108 7-139 31-140 (166)
197 3e18_A Oxidoreductase; dehydro 69.7 37 0.0013 26.4 10.0 103 7-136 4-112 (359)
198 3gnn_A Nicotinate-nucleotide p 69.6 13 0.00046 28.5 6.5 54 79-136 197-250 (298)
199 1tqx_A D-ribulose-5-phosphate 69.2 19 0.00066 26.4 7.1 55 64-121 139-200 (227)
200 2w6r_A Imidazole glycerol phos 69.2 17 0.00057 26.9 6.9 53 66-121 47-102 (266)
201 4e5v_A Putative THUA-like prot 69.1 9.3 0.00032 29.1 5.5 81 7-102 3-95 (281)
202 3beo_A UDP-N-acetylglucosamine 69.0 36 0.0012 25.9 12.4 60 64-139 283-342 (375)
203 1dxe_A 2-dehydro-3-deoxy-galac 68.6 33 0.0011 25.4 12.5 101 24-136 10-113 (256)
204 1thf_D HISF protein; thermophI 68.6 27 0.00092 25.5 7.9 52 78-132 183-240 (253)
205 4avf_A Inosine-5'-monophosphat 68.5 16 0.00054 30.1 7.1 56 63-121 241-297 (490)
206 4hjf_A Ggdef family protein; s 68.5 10 0.00035 29.6 5.8 102 24-137 217-329 (340)
207 3tox_A Short chain dehydrogena 68.4 24 0.0008 26.4 7.7 91 1-101 1-93 (280)
208 2a1i_A DNA excision repair pro 68.4 9.8 0.00034 26.0 4.9 46 8-53 84-133 (146)
209 3gdo_A Uncharacterized oxidore 68.0 19 0.00066 28.0 7.3 104 7-137 4-113 (358)
210 1f0k_A MURG, UDP-N-acetylgluco 67.9 28 0.00097 26.4 8.3 62 64-136 255-322 (364)
211 1ka9_F Imidazole glycerol phos 67.8 33 0.0011 25.0 9.3 51 79-132 185-241 (252)
212 2r6o_A Putative diguanylate cy 67.4 7.7 0.00026 29.6 4.7 100 24-135 168-278 (294)
213 2vws_A YFAU, 2-keto-3-deoxy su 66.9 38 0.0013 25.4 12.8 101 24-136 9-112 (267)
214 1h5y_A HISF; histidine biosynt 66.8 26 0.0009 25.3 7.6 41 78-121 186-226 (253)
215 4fo4_A Inosine 5'-monophosphat 66.6 21 0.00072 28.3 7.2 56 63-121 120-176 (366)
216 1xi3_A Thiamine phosphate pyro 66.3 21 0.00071 25.3 6.7 54 63-120 128-188 (215)
217 2v82_A 2-dehydro-3-deoxy-6-pho 66.2 30 0.001 24.6 7.6 97 26-138 95-198 (212)
218 3inp_A D-ribulose-phosphate 3- 66.2 8.5 0.00029 28.7 4.6 58 63-121 156-222 (246)
219 3ec7_A Putative dehydrogenase; 65.9 18 0.00061 28.2 6.8 106 7-135 22-133 (357)
220 1ujp_A Tryptophan synthase alp 65.8 35 0.0012 25.7 8.1 39 79-122 191-229 (271)
221 1x1o_A Nicotinate-nucleotide p 65.2 21 0.00072 27.2 6.8 54 80-136 184-237 (286)
222 3sc6_A DTDP-4-dehydrorhamnose 65.1 25 0.00087 25.8 7.3 78 9-101 6-106 (287)
223 3f4w_A Putative hexulose 6 pho 65.0 9 0.00031 27.3 4.5 45 77-123 39-85 (211)
224 3euw_A MYO-inositol dehydrogen 64.8 31 0.0011 26.4 7.9 105 8-137 4-113 (344)
225 3kux_A Putative oxidoreductase 64.5 47 0.0016 25.6 9.0 104 7-137 6-115 (352)
226 3r2g_A Inosine 5'-monophosphat 64.4 25 0.00084 27.8 7.2 56 63-121 112-168 (361)
227 2l69_A Rossmann 2X3 fold prote 64.2 24 0.00082 22.1 11.9 120 8-140 2-124 (134)
228 3o63_A Probable thiamine-phosp 63.9 42 0.0014 24.8 11.8 71 37-121 141-218 (243)
229 3e9m_A Oxidoreductase, GFO/IDH 63.8 29 0.00098 26.6 7.5 106 7-136 4-114 (330)
230 3sy8_A ROCR; TIM barrel phosph 63.6 12 0.0004 29.7 5.3 98 26-135 283-391 (400)
231 1o4u_A Type II quinolic acid p 63.4 30 0.001 26.4 7.3 56 79-137 180-235 (285)
232 3iwp_A Copper homeostasis prot 63.1 46 0.0016 25.4 8.2 94 16-122 136-238 (287)
233 1qpo_A Quinolinate acid phosph 63.0 23 0.00078 27.0 6.6 56 79-138 182-237 (284)
234 3kts_A Glycerol uptake operon 63.0 19 0.00066 25.8 5.8 61 43-121 118-178 (192)
235 3ovp_A Ribulose-phosphate 3-ep 62.8 21 0.00071 26.2 6.2 59 77-138 49-110 (228)
236 3l4b_C TRKA K+ channel protien 62.6 38 0.0013 24.0 8.2 54 63-121 65-118 (218)
237 1g5t_A COB(I)alamin adenosyltr 62.6 24 0.00083 25.3 6.3 45 61-108 118-167 (196)
238 1qtn_A Caspase-8; apoptosis, d 62.5 36 0.0012 23.6 7.2 31 18-48 54-86 (164)
239 3hvb_A Protein FIMX; EAL phosp 62.4 15 0.00051 29.4 5.8 93 24-128 327-429 (437)
240 4f3h_A Fimxeal, putative uncha 62.4 36 0.0012 24.8 7.6 90 24-125 148-248 (250)
241 3lf2_A Short chain oxidoreduct 62.3 43 0.0015 24.5 8.5 93 1-101 1-95 (265)
242 3usb_A Inosine-5'-monophosphat 62.1 31 0.001 28.6 7.7 69 39-121 255-324 (511)
243 2kpo_A Rossmann 2X2 fold prote 61.9 24 0.00082 21.4 6.7 43 9-51 3-45 (110)
244 1y0e_A Putative N-acetylmannos 61.6 19 0.00064 25.8 5.8 41 78-121 163-203 (223)
245 2hmt_A YUAA protein; RCK, KTN, 61.4 29 0.001 22.3 8.9 105 9-119 7-121 (144)
246 1tqj_A Ribulose-phosphate 3-ep 61.4 33 0.0011 25.0 7.1 57 77-137 49-109 (230)
247 3db2_A Putative NADPH-dependen 61.4 22 0.00075 27.5 6.5 103 8-136 5-113 (354)
248 2w6r_A Imidazole glycerol phos 61.3 17 0.00059 26.8 5.7 41 78-121 188-228 (266)
249 1v4v_A UDP-N-acetylglucosamine 60.8 53 0.0018 25.0 11.2 60 64-139 275-334 (376)
250 3fhl_A Putative oxidoreductase 60.6 12 0.00042 29.2 4.9 106 6-137 3-113 (362)
251 3ceu_A Thiamine phosphate pyro 60.6 34 0.0012 24.4 7.0 54 64-120 108-170 (210)
252 1req_B Methylmalonyl-COA mutas 60.3 33 0.0011 29.3 7.7 96 21-133 527-629 (637)
253 2dko_A Caspase-3; low barrier 60.3 35 0.0012 23.1 6.6 30 20-49 42-73 (146)
254 3i4f_A 3-oxoacyl-[acyl-carrier 60.2 26 0.00088 25.6 6.5 86 8-102 7-94 (264)
255 4a29_A Engineered retro-aldol 60.1 52 0.0018 24.7 11.6 89 21-122 142-233 (258)
256 1m72_A Caspase-1; caspase, cys 60.0 42 0.0014 25.3 7.6 53 18-75 55-109 (272)
257 3o07_A Pyridoxine biosynthesis 59.9 13 0.00044 28.4 4.6 61 77-140 185-252 (291)
258 1lnq_A MTHK channels, potassiu 59.8 56 0.0019 24.9 9.1 53 63-120 177-229 (336)
259 3op4_A 3-oxoacyl-[acyl-carrier 59.4 48 0.0016 24.0 8.8 86 4-101 5-91 (248)
260 4ew6_A D-galactose-1-dehydroge 59.3 43 0.0015 25.7 7.8 102 6-137 23-129 (330)
261 2hsj_A Putative platelet activ 59.0 9.4 0.00032 26.8 3.7 87 6-102 32-133 (214)
262 1vzw_A Phosphoribosyl isomeras 58.9 49 0.0017 24.0 8.9 66 64-132 160-238 (244)
263 1p9l_A Dihydrodipicolinate red 58.6 53 0.0018 24.3 10.8 113 9-138 1-121 (245)
264 1je8_A Nitrate/nitrite respons 58.4 0.88 3E-05 27.7 -1.7 24 163-186 19-42 (82)
265 3p45_A Caspase-6; protease, hu 58.1 46 0.0016 23.5 7.1 31 19-49 69-101 (179)
266 4dpk_A Malonyl-COA/succinyl-CO 57.8 11 0.00036 29.9 4.0 92 1-102 1-112 (359)
267 4dpl_A Malonyl-COA/succinyl-CO 57.8 11 0.00036 29.9 4.0 92 1-102 1-112 (359)
268 2rnj_A Response regulator prot 57.7 1.1 3.6E-05 27.8 -1.5 24 163-186 27-50 (91)
269 2j32_A Caspase-3; Pro-caspase3 57.6 32 0.0011 25.5 6.5 52 20-76 42-95 (250)
270 3o26_A Salutaridine reductase; 57.6 41 0.0014 24.9 7.3 86 8-102 12-100 (311)
271 3jy6_A Transcriptional regulat 57.5 52 0.0018 23.9 10.9 62 21-101 26-93 (276)
272 4fyk_A Deoxyribonucleoside 5'- 57.5 7.8 0.00027 26.7 2.8 71 63-139 68-142 (152)
273 4had_A Probable oxidoreductase 57.2 39 0.0013 25.9 7.2 106 5-134 20-131 (350)
274 3ot5_A UDP-N-acetylglucosamine 57.1 70 0.0024 25.2 10.6 42 93-139 320-361 (403)
275 3tdn_A FLR symmetric alpha-bet 57.1 38 0.0013 24.7 6.9 53 66-121 52-107 (247)
276 3btv_A Galactose/lactose metab 57.0 28 0.00097 28.0 6.6 45 93-137 89-143 (438)
277 4af0_A Inosine-5'-monophosphat 56.9 20 0.00068 30.1 5.6 54 63-119 293-347 (556)
278 4egb_A DTDP-glucose 4,6-dehydr 56.6 62 0.0021 24.4 8.8 34 4-37 20-55 (346)
279 3szt_A QCSR, quorum-sensing co 56.6 0.68 2.3E-05 34.3 -2.9 24 163-186 173-196 (237)
280 3jr2_A Hexulose-6-phosphate sy 56.6 14 0.00047 26.7 4.3 21 67-88 62-82 (218)
281 1qdl_B Protein (anthranilate s 56.3 7.5 0.00026 27.5 2.7 31 11-41 4-34 (195)
282 3ctl_A D-allulose-6-phosphate 56.3 31 0.0011 25.3 6.2 59 63-122 128-195 (231)
283 3l0g_A Nicotinate-nucleotide p 56.0 58 0.002 25.0 7.7 91 10-119 180-276 (300)
284 1viz_A PCRB protein homolog; s 55.4 19 0.00064 26.8 4.8 36 78-123 50-85 (240)
285 3hv8_A Protein FIMX; EAL phosp 55.0 12 0.0004 27.8 3.8 93 24-128 158-260 (268)
286 3bw2_A 2-nitropropane dioxygen 54.9 74 0.0025 24.8 12.1 40 78-120 196-235 (369)
287 3dr5_A Putative O-methyltransf 54.6 35 0.0012 24.5 6.2 79 8-101 81-163 (221)
288 1pyo_A Caspase-2; apoptosis, c 54.6 50 0.0017 22.9 6.7 30 20-49 59-90 (167)
289 1tlt_A Putative oxidoreductase 54.2 40 0.0014 25.5 6.8 43 93-135 65-111 (319)
290 3ak4_A NADH-dependent quinucli 54.2 60 0.0021 23.6 9.9 81 8-101 12-94 (263)
291 4dmm_A 3-oxoacyl-[acyl-carrier 53.8 63 0.0022 23.7 9.1 88 5-101 25-114 (269)
292 3tpc_A Short chain alcohol deh 53.6 55 0.0019 23.7 7.3 84 5-101 4-89 (257)
293 2ehd_A Oxidoreductase, oxidore 53.4 57 0.002 23.1 7.9 39 8-46 5-43 (234)
294 2p9j_A Hypothetical protein AQ 53.2 46 0.0016 22.0 8.0 40 79-122 42-81 (162)
295 3lkz_A Non-structural protein 53.1 21 0.00073 27.6 4.8 63 62-140 159-223 (321)
296 3nrc_A Enoyl-[acyl-carrier-pro 52.7 67 0.0023 23.7 8.5 83 6-101 24-111 (280)
297 1izc_A Macrophomate synthase i 52.5 81 0.0028 24.6 12.2 76 61-136 61-139 (339)
298 4dzz_A Plasmid partitioning pr 52.3 54 0.0019 22.5 7.1 53 8-72 30-84 (206)
299 3s28_A Sucrose synthase 1; gly 52.3 1.1E+02 0.0039 26.9 10.0 108 8-137 603-728 (816)
300 3oqb_A Oxidoreductase; structu 52.2 54 0.0018 25.5 7.4 44 93-136 83-130 (383)
301 3vk5_A MOEO5; TIM barrel, tran 52.1 68 0.0023 24.5 7.5 56 65-122 201-256 (286)
302 3u5t_A 3-oxoacyl-[acyl-carrier 51.9 68 0.0023 23.6 7.6 88 5-101 24-113 (267)
303 3cea_A MYO-inositol 2-dehydrog 51.8 77 0.0026 24.1 8.8 105 6-134 6-116 (346)
304 3evn_A Oxidoreductase, GFO/IDH 51.7 14 0.00048 28.3 3.8 45 93-137 67-115 (329)
305 4e6p_A Probable sorbitol dehyd 51.7 66 0.0023 23.3 10.4 83 6-101 6-90 (259)
306 1i1q_B Anthranilate synthase c 51.7 51 0.0017 23.0 6.5 33 9-41 1-33 (192)
307 3ffs_A Inosine-5-monophosphate 51.7 32 0.0011 27.6 6.0 55 63-121 156-211 (400)
308 3h2s_A Putative NADH-flavin re 51.6 37 0.0013 23.8 5.9 37 10-46 2-38 (224)
309 3v8b_A Putative dehydrogenase, 51.2 72 0.0025 23.6 8.8 88 4-101 24-113 (283)
310 2c6q_A GMP reductase 2; TIM ba 51.2 38 0.0013 26.5 6.3 55 64-121 133-188 (351)
311 3egc_A Putative ribose operon 51.1 69 0.0024 23.4 8.6 19 21-39 27-45 (291)
312 3h11_B Caspase-8; cell death, 50.9 47 0.0016 25.0 6.5 48 19-71 49-98 (271)
313 2lci_A Protein OR36; structura 50.9 43 0.0015 21.0 8.8 117 8-137 2-121 (134)
314 1wa3_A 2-keto-3-deoxy-6-phosph 50.7 25 0.00085 24.8 4.8 41 78-121 137-177 (205)
315 1thf_D HISF protein; thermophI 50.6 63 0.0021 23.4 7.2 41 79-122 63-103 (253)
316 3tqv_A Nicotinate-nucleotide p 50.5 82 0.0028 24.0 8.5 90 11-119 172-267 (287)
317 3gjy_A Spermidine synthase; AP 50.3 78 0.0027 24.4 7.8 71 8-89 113-190 (317)
318 3g8r_A Probable spore coat pol 50.2 91 0.0031 24.5 10.1 78 19-113 78-155 (350)
319 2vpt_A Lipolytic enzyme; ester 50.2 62 0.0021 22.6 7.2 89 5-102 2-129 (215)
320 3v5n_A Oxidoreductase; structu 50.0 83 0.0028 25.0 8.2 45 93-137 110-158 (417)
321 3i1j_A Oxidoreductase, short c 49.8 68 0.0023 22.9 8.8 87 8-101 14-102 (247)
322 3od5_A Caspase-6; caspase doma 49.8 54 0.0018 24.7 6.7 51 19-74 46-98 (278)
323 3nav_A Tryptophan synthase alp 49.7 80 0.0027 23.7 9.5 97 12-123 130-238 (271)
324 2nvw_A Galactose/lactose metab 49.6 75 0.0025 25.9 8.0 45 93-137 108-162 (479)
325 3dzc_A UDP-N-acetylglucosamine 49.6 92 0.0032 24.4 8.7 42 93-139 326-367 (396)
326 3ffs_A Inosine-5-monophosphate 49.5 99 0.0034 24.7 11.8 88 21-120 173-273 (400)
327 1z0s_A Probable inorganic poly 49.5 33 0.0011 26.0 5.5 93 9-138 30-122 (278)
328 2xxa_A Signal recognition part 49.4 60 0.0021 26.2 7.3 11 8-18 129-139 (433)
329 2lci_A Protein OR36; structura 49.3 46 0.0016 20.8 6.3 28 10-37 53-80 (134)
330 2vsy_A XCC0866; transferase, g 49.1 1.1E+02 0.0036 25.0 11.0 110 8-139 406-522 (568)
331 4egf_A L-xylulose reductase; s 49.1 75 0.0026 23.2 8.3 86 7-101 19-106 (266)
332 4gx0_A TRKA domain protein; me 49.1 1.1E+02 0.0038 25.2 9.2 52 63-121 192-243 (565)
333 3awd_A GOX2181, putative polyo 48.9 71 0.0024 22.9 8.9 33 7-39 12-44 (260)
334 2nn3_C Caspase-1; cysteine pro 48.9 89 0.003 24.0 7.9 49 18-71 83-133 (310)
335 2x6q_A Trehalose-synthase TRET 48.9 91 0.0031 24.1 11.1 64 64-139 316-379 (416)
336 3qja_A IGPS, indole-3-glycerol 48.8 83 0.0028 23.6 7.9 54 79-135 102-157 (272)
337 1rpx_A Protein (ribulose-phosp 48.8 64 0.0022 23.1 6.9 99 11-121 95-206 (230)
338 3khj_A Inosine-5-monophosphate 48.8 96 0.0033 24.3 10.4 89 20-120 133-234 (361)
339 2fli_A Ribulose-phosphate 3-ep 48.7 58 0.002 23.0 6.6 99 11-121 88-197 (220)
340 3ks6_A Glycerophosphoryl diest 48.6 77 0.0026 23.2 7.4 54 79-139 194-247 (250)
341 2o6l_A UDP-glucuronosyltransfe 48.2 58 0.002 21.7 7.4 67 63-139 86-154 (170)
342 1mxs_A KDPG aldolase; 2-keto-3 48.2 76 0.0026 23.0 8.8 101 21-135 16-117 (225)
343 1jcn_A Inosine monophosphate d 48.1 85 0.0029 25.8 8.2 69 39-121 254-323 (514)
344 1p4w_A RCSB; solution structur 47.9 0.66 2.3E-05 29.6 -3.7 24 163-186 32-55 (99)
345 2tps_A Protein (thiamin phosph 47.8 72 0.0025 22.6 9.1 55 64-121 137-199 (227)
346 1nw9_B Caspase 9, apoptosis-re 47.7 65 0.0022 24.2 6.9 47 20-71 47-95 (277)
347 1rd5_A Tryptophan synthase alp 47.5 24 0.00081 26.2 4.4 54 78-135 82-138 (262)
348 4em8_A Ribose 5-phosphate isom 47.3 38 0.0013 23.1 4.9 30 9-38 8-39 (148)
349 3gem_A Short chain dehydrogena 47.2 60 0.002 23.8 6.6 85 2-101 21-107 (260)
350 2ql9_A Caspase-7; cysteine pro 47.2 59 0.002 22.7 6.1 31 19-49 69-101 (173)
351 3o9z_A Lipopolysaccaride biosy 47.1 42 0.0014 25.6 5.8 45 93-137 72-120 (312)
352 3qk7_A Transcriptional regulat 47.1 82 0.0028 23.1 8.4 63 21-101 29-96 (294)
353 1p0k_A Isopentenyl-diphosphate 47.0 47 0.0016 25.7 6.2 47 76-124 236-283 (349)
354 4hkt_A Inositol 2-dehydrogenas 47.0 90 0.0031 23.6 7.8 104 8-137 3-111 (331)
355 3pk0_A Short-chain dehydrogena 46.8 81 0.0028 22.9 8.2 90 3-101 5-96 (262)
356 2y88_A Phosphoribosyl isomeras 46.7 49 0.0017 23.9 6.0 65 64-131 163-240 (244)
357 1h5y_A HISF; histidine biosynt 45.8 80 0.0027 22.6 7.8 41 78-121 65-105 (253)
358 3pfn_A NAD kinase; structural 45.8 1.1E+02 0.0038 24.2 8.6 111 8-140 38-165 (365)
359 2yzr_A Pyridoxal biosynthesis 45.5 32 0.0011 26.8 4.9 59 78-139 228-293 (330)
360 2d00_A V-type ATP synthase sub 45.4 57 0.002 20.8 9.3 79 8-102 3-81 (109)
361 3oa2_A WBPB; oxidoreductase, s 45.4 39 0.0013 25.8 5.5 45 93-137 73-121 (318)
362 3sho_A Transcriptional regulat 45.3 71 0.0024 21.8 10.6 82 10-106 41-127 (187)
363 3c57_A Two component transcrip 45.2 1 3.5E-05 28.3 -3.1 23 164-186 26-48 (95)
364 2q0o_A Probable transcriptiona 45.1 1.5 5.2E-05 32.2 -2.6 24 163-186 173-196 (236)
365 3f1l_A Uncharacterized oxidore 45.1 85 0.0029 22.7 8.0 87 8-101 12-100 (252)
366 1qap_A Quinolinic acid phospho 45.0 58 0.002 24.9 6.3 53 79-135 196-248 (296)
367 1vli_A Spore coat polysacchari 44.9 1.1E+02 0.0039 24.3 8.1 78 18-112 100-177 (385)
368 3ppi_A 3-hydroxyacyl-COA dehyd 44.7 90 0.0031 22.9 8.7 34 7-40 29-62 (281)
369 2ift_A Putative methylase HI07 44.7 70 0.0024 22.3 6.4 68 9-87 77-149 (201)
370 3r8r_A Transaldolase; pentose 44.6 39 0.0013 24.6 4.9 86 26-123 96-187 (212)
371 3nyw_A Putative oxidoreductase 44.0 80 0.0027 22.8 6.8 88 7-101 6-95 (250)
372 1qo2_A Molecule: N-((5-phospho 43.5 32 0.0011 25.0 4.5 52 78-132 176-239 (241)
373 3l6u_A ABC-type sugar transpor 43.5 91 0.0031 22.6 8.2 70 21-103 27-99 (293)
374 3sir_A Caspase; hydrolase; 2.6 43.5 57 0.002 24.3 5.9 52 19-75 44-97 (259)
375 2b7n_A Probable nicotinate-nuc 43.3 98 0.0034 23.2 7.3 56 79-137 169-224 (273)
376 4ehd_A Caspase-3; caspase, apo 43.2 74 0.0025 24.0 6.5 51 20-75 70-122 (277)
377 3qvq_A Phosphodiesterase OLEI0 43.2 95 0.0032 22.7 11.1 47 80-133 201-247 (252)
378 3qp6_A CVIR transcriptional re 43.0 1.4 4.9E-05 33.2 -3.1 23 164-186 196-218 (265)
379 2yw3_A 4-hydroxy-2-oxoglutarat 43.0 88 0.003 22.3 10.1 89 31-138 103-199 (207)
380 3gvc_A Oxidoreductase, probabl 43.0 98 0.0034 22.8 8.3 81 8-101 29-111 (277)
381 2e6f_A Dihydroorotate dehydrog 43.0 53 0.0018 24.9 5.8 39 79-119 232-270 (314)
382 4fo4_A Inosine 5'-monophosphat 42.9 1.2E+02 0.0041 23.9 12.2 99 9-120 121-238 (366)
383 2f6u_A GGGPS, (S)-3-O-geranylg 42.8 82 0.0028 23.1 6.6 54 65-122 165-218 (234)
384 3vnd_A TSA, tryptophan synthas 42.8 1E+02 0.0036 23.0 9.1 98 12-123 128-236 (267)
385 3ic5_A Putative saccharopine d 42.7 56 0.0019 20.0 5.9 40 8-48 5-45 (118)
386 3k4h_A Putative transcriptiona 42.7 94 0.0032 22.5 9.9 19 21-39 32-50 (292)
387 2p2s_A Putative oxidoreductase 42.6 33 0.0011 26.2 4.7 43 93-135 66-112 (336)
388 2hy7_A Glucuronosyltransferase 42.5 28 0.00097 27.4 4.4 37 93-139 315-352 (406)
389 3lyl_A 3-oxoacyl-(acyl-carrier 42.5 90 0.0031 22.2 8.4 85 8-101 5-90 (247)
390 1l3l_A Transcriptional activat 42.4 1.9 6.4E-05 31.7 -2.5 24 163-186 171-194 (234)
391 2iuy_A Avigt4, glycosyltransfe 42.4 88 0.003 23.4 7.1 32 9-40 4-55 (342)
392 4b4u_A Bifunctional protein fo 42.3 1.1E+02 0.0039 23.4 8.2 75 7-88 54-137 (303)
393 3moi_A Probable dehydrogenase; 42.3 64 0.0022 25.2 6.4 44 93-136 64-111 (387)
394 2px2_A Genome polyprotein [con 42.1 54 0.0018 24.8 5.4 62 62-139 138-201 (269)
395 3s55_A Putative short-chain de 41.9 1E+02 0.0034 22.6 9.5 89 3-101 5-107 (281)
396 1x3u_A Transcriptional regulat 41.6 2.3 7.8E-05 25.2 -1.8 23 164-186 15-37 (79)
397 3khj_A Inosine-5-monophosphate 41.5 89 0.0031 24.5 7.0 55 63-121 117-172 (361)
398 1vc4_A Indole-3-glycerol phosp 41.5 41 0.0014 25.0 4.8 87 22-121 141-235 (254)
399 1vrd_A Inosine-5'-monophosphat 41.1 1.1E+02 0.0036 25.0 7.7 69 39-121 236-305 (494)
400 3h11_A CAsp8 and FADD-like apo 40.8 20 0.00069 27.1 3.0 60 8-71 43-104 (272)
401 2pz0_A Glycerophosphoryl diest 40.7 81 0.0028 23.0 6.4 39 79-122 201-239 (252)
402 3vue_A GBSS-I, granule-bound s 40.5 97 0.0033 25.6 7.4 65 64-138 402-476 (536)
403 1wbh_A KHG/KDPG aldolase; lyas 40.2 1E+02 0.0034 22.1 9.3 95 26-134 11-106 (214)
404 4adt_A Pyridoxine biosynthetic 40.1 49 0.0017 25.3 5.1 57 78-137 195-258 (297)
405 3abi_A Putative uncharacterize 40.1 95 0.0033 24.0 7.0 42 5-48 13-54 (365)
406 3ip3_A Oxidoreductase, putativ 40.1 1.2E+02 0.0041 23.0 7.9 44 93-136 67-114 (337)
407 1zcz_A Bifunctional purine bio 40.1 1.5E+02 0.0052 24.2 8.2 89 9-101 14-128 (464)
408 3s1x_A Probable transaldolase; 40.0 67 0.0023 23.5 5.6 86 26-123 98-189 (223)
409 3kzp_A LMO0111 protein, putati 40.0 14 0.00049 26.6 2.1 90 23-124 132-233 (235)
410 3snr_A Extracellular ligand-bi 40.0 1.1E+02 0.0039 22.7 8.5 84 10-108 137-231 (362)
411 1ep3_A Dihydroorotate dehydrog 39.8 51 0.0017 24.8 5.3 38 79-119 230-267 (311)
412 1ydw_A AX110P-like protein; st 39.8 1.3E+02 0.0043 23.2 8.7 110 7-137 5-119 (362)
413 4fb5_A Probable oxidoreductase 39.8 1.1E+02 0.0037 23.5 7.4 44 93-136 94-141 (393)
414 1vhc_A Putative KHG/KDPG aldol 39.8 1.1E+02 0.0036 22.2 9.4 98 24-135 10-108 (224)
415 2wqp_A Polysialic acid capsule 39.7 1.4E+02 0.0046 23.5 8.6 78 18-112 90-167 (349)
416 2x0d_A WSAF; GT4 family, trans 39.7 43 0.0015 26.5 5.0 65 64-139 315-379 (413)
417 4ef8_A Dihydroorotate dehydrog 39.7 47 0.0016 26.1 5.1 39 79-119 265-303 (354)
418 3v2g_A 3-oxoacyl-[acyl-carrier 39.7 1.1E+02 0.0038 22.4 8.7 86 7-101 30-117 (271)
419 3grp_A 3-oxoacyl-(acyl carrier 39.4 1.1E+02 0.0038 22.4 9.8 86 4-101 23-109 (266)
420 1eep_A Inosine 5'-monophosphat 39.2 1.4E+02 0.0048 23.5 12.1 44 78-121 241-284 (404)
421 4e12_A Diketoreductase; oxidor 39.1 1.2E+02 0.004 22.5 9.0 37 9-46 5-41 (283)
422 3o74_A Fructose transport syst 39.0 1E+02 0.0036 21.9 7.3 18 21-38 21-38 (272)
423 3aon_B V-type sodium ATPase su 38.8 78 0.0027 20.4 6.3 75 9-101 3-77 (115)
424 3cvo_A Methyltransferase-like 38.8 44 0.0015 24.0 4.5 26 8-33 51-76 (202)
425 1iow_A DD-ligase, DDLB, D-ALA\ 38.8 26 0.00088 26.1 3.4 33 9-41 3-43 (306)
426 2l69_A Rossmann 2X3 fold prote 38.7 71 0.0024 20.0 6.3 33 12-44 81-113 (134)
427 3ew7_A LMO0794 protein; Q8Y8U8 38.7 57 0.0019 22.6 5.1 30 10-39 2-31 (221)
428 3ius_A Uncharacterized conserv 38.6 30 0.001 25.4 3.7 30 9-39 6-35 (286)
429 3iwt_A 178AA long hypothetical 38.5 76 0.0026 21.8 5.7 47 20-73 41-91 (178)
430 3e61_A Putative transcriptiona 38.5 84 0.0029 22.6 6.2 64 22-102 28-95 (277)
431 2h6r_A Triosephosphate isomera 38.4 1.1E+02 0.0037 22.0 10.3 40 80-121 159-198 (219)
432 3uuw_A Putative oxidoreductase 38.4 66 0.0023 24.1 5.7 105 8-137 6-114 (308)
433 4fe7_A Xylose operon regulator 38.2 1E+02 0.0035 24.0 7.1 77 6-102 23-106 (412)
434 3tha_A Tryptophan synthase alp 38.1 47 0.0016 24.8 4.6 64 74-139 71-140 (252)
435 1uf3_A Hypothetical protein TT 38.0 99 0.0034 21.4 6.7 40 63-106 32-76 (228)
436 4gmf_A Yersiniabactin biosynth 37.9 75 0.0026 25.0 6.1 35 105-139 84-118 (372)
437 1qsg_A Enoyl-[acyl-carrier-pro 37.9 1.1E+02 0.0036 22.2 6.7 32 7-38 8-41 (265)
438 2lqo_A Putative glutaredoxin R 37.8 66 0.0022 19.7 4.7 10 23-32 19-28 (92)
439 3k9c_A Transcriptional regulat 37.7 1.2E+02 0.004 22.1 7.8 62 22-102 31-97 (289)
440 3kbb_A Phosphorylated carbohyd 37.5 93 0.0032 21.3 6.1 55 77-136 88-153 (216)
441 3d3w_A L-xylulose reductase; u 37.5 82 0.0028 22.4 5.9 35 5-39 4-38 (244)
442 3ctl_A D-allulose-6-phosphate 37.4 1.2E+02 0.004 22.1 7.8 66 68-137 33-103 (231)
443 2vvp_A Ribose-5-phosphate isom 37.4 53 0.0018 22.8 4.5 30 9-38 4-35 (162)
444 3e3m_A Transcriptional regulat 37.4 1.3E+02 0.0045 22.7 7.8 19 20-38 88-106 (355)
445 4a26_A Putative C-1-tetrahydro 37.2 1.4E+02 0.0048 22.9 7.9 61 7-74 38-106 (300)
446 2qyt_A 2-dehydropantoate 2-red 36.8 93 0.0032 23.1 6.4 80 5-88 5-106 (317)
447 4e38_A Keto-hydroxyglutarate-a 36.6 1.2E+02 0.0042 22.1 9.1 77 26-120 121-200 (232)
448 3ezy_A Dehydrogenase; structur 36.6 1.4E+02 0.0048 22.7 8.2 104 9-136 3-111 (344)
449 3pxx_A Carveol dehydrogenase; 36.5 1.2E+02 0.0042 22.1 8.7 88 4-101 6-107 (287)
450 1vcf_A Isopentenyl-diphosphate 36.5 86 0.0029 24.1 6.2 46 77-124 242-288 (332)
451 1yde_A Retinal dehydrogenase/r 36.1 1.2E+02 0.0043 22.0 9.2 81 8-101 9-90 (270)
452 1id1_A Putative potassium chan 36.1 91 0.0031 20.5 8.3 106 9-120 4-123 (153)
453 2rgy_A Transcriptional regulat 36.0 1.2E+02 0.0042 22.0 9.4 18 21-38 27-44 (290)
454 3tsa_A SPNG, NDP-rhamnosyltran 36.0 95 0.0033 23.7 6.5 55 80-139 298-356 (391)
455 2bas_A YKUI protein; EAL domai 36.0 1.3E+02 0.0046 23.9 7.4 94 22-127 160-264 (431)
456 3rih_A Short chain dehydrogena 35.9 1.3E+02 0.0044 22.4 7.0 83 7-101 40-127 (293)
457 1b0a_A Protein (fold bifunctio 35.9 1E+02 0.0035 23.5 6.3 62 7-75 34-103 (288)
458 1hg3_A Triosephosphate isomera 35.8 1.3E+02 0.0043 22.0 11.5 79 30-122 115-205 (225)
459 4h08_A Putative hydrolase; GDS 35.8 1E+02 0.0035 21.0 9.5 85 8-102 20-120 (200)
460 1h1y_A D-ribulose-5-phosphate 35.7 1.2E+02 0.0041 21.7 6.6 56 77-136 51-109 (228)
461 3huu_A Transcription regulator 35.7 1.3E+02 0.0044 22.1 9.9 64 21-102 46-115 (305)
462 3pjx_A Cyclic dimeric GMP bind 35.6 1.4E+02 0.0048 23.5 7.5 90 24-125 328-428 (430)
463 1f1j_A Caspase-7 protease; cas 35.5 82 0.0028 24.1 5.8 52 19-75 94-147 (305)
464 3u81_A Catechol O-methyltransf 35.5 89 0.003 21.9 5.8 60 8-74 83-145 (221)
465 2otd_A Glycerophosphodiester p 35.5 1.2E+02 0.0043 21.8 9.3 38 80-122 198-235 (247)
466 3l12_A Putative glycerophospho 35.5 1.2E+02 0.004 23.0 6.7 47 80-133 259-305 (313)
467 2pr7_A Haloacid dehalogenase/e 35.4 73 0.0025 19.9 4.9 37 66-106 4-47 (137)
468 2aef_A Calcium-gated potassium 35.4 1.2E+02 0.004 21.5 9.5 105 8-119 9-122 (234)
469 2ho3_A Oxidoreductase, GFO/IDH 35.4 1.4E+02 0.0048 22.4 10.3 103 9-136 2-109 (325)
470 1wl8_A GMP synthase [glutamine 35.2 45 0.0015 23.1 4.0 77 11-101 3-80 (189)
471 2f6u_A GGGPS, (S)-3-O-geranylg 35.1 1.1E+02 0.0038 22.4 6.2 49 63-122 33-84 (234)
472 3rhb_A ATGRXC5, glutaredoxin-C 35.1 80 0.0027 19.5 6.1 73 18-101 6-81 (113)
473 3l49_A ABC sugar (ribose) tran 35.0 1.3E+02 0.0043 21.8 8.7 69 21-102 24-95 (291)
474 4gud_A Imidazole glycerol phos 34.9 55 0.0019 23.0 4.5 35 9-43 3-37 (211)
475 3m1a_A Putative dehydrogenase; 34.9 1.3E+02 0.0045 21.9 7.7 82 8-101 5-87 (281)
476 3oix_A Putative dihydroorotate 34.8 86 0.0029 24.5 5.9 40 79-119 262-301 (345)
477 1yxy_A Putative N-acetylmannos 34.8 69 0.0023 23.0 5.1 40 78-121 175-214 (234)
478 4gx0_A TRKA domain protein; me 34.7 1.8E+02 0.0063 23.9 8.3 96 9-121 349-461 (565)
479 4eg0_A D-alanine--D-alanine li 34.7 36 0.0012 25.7 3.7 54 8-72 13-74 (317)
480 1jub_A Dihydroorotate dehydrog 34.7 87 0.003 23.6 5.9 40 79-119 229-268 (311)
481 3sg0_A Extracellular ligand-bi 34.7 1.4E+02 0.0049 22.5 7.2 84 10-108 161-255 (386)
482 3rot_A ABC sugar transporter, 34.6 1.3E+02 0.0045 21.9 8.3 69 21-102 22-95 (297)
483 3zwt_A Dihydroorotate dehydrog 34.4 93 0.0032 24.5 6.1 41 79-120 285-325 (367)
484 2an1_A Putative kinase; struct 34.3 1.4E+02 0.0049 22.2 8.2 108 9-140 6-120 (292)
485 1xg5_A ARPG836; short chain de 34.3 1.3E+02 0.0046 21.8 8.1 86 8-101 32-119 (279)
486 3vzx_A Heptaprenylglyceryl pho 34.2 1.4E+02 0.0047 21.9 7.1 55 64-122 154-208 (228)
487 3h75_A Periplasmic sugar-bindi 34.1 1.3E+02 0.0044 22.6 6.9 70 21-103 23-96 (350)
488 1tqj_A Ribulose-phosphate 3-ep 34.0 1.3E+02 0.0045 21.7 7.5 58 63-121 134-200 (230)
489 3r75_A Anthranilate/para-amino 33.9 1.2E+02 0.004 26.0 7.0 31 9-39 447-477 (645)
490 1lc0_A Biliverdin reductase A; 33.8 40 0.0014 25.4 3.8 103 5-137 4-113 (294)
491 1viz_A PCRB protein homolog; s 33.7 1.4E+02 0.0046 22.0 6.5 54 66-123 158-211 (240)
492 3tjx_A Dihydroorotate dehydrog 33.7 58 0.002 25.3 4.8 38 80-119 266-303 (354)
493 4e3z_A Putative oxidoreductase 33.7 1.4E+02 0.0047 21.7 8.0 85 8-101 26-112 (272)
494 3fxa_A SIS domain protein; str 33.7 65 0.0022 22.4 4.7 83 10-107 47-133 (201)
495 1fse_A GERE; helix-turn-helix 33.6 2.5 8.5E-05 24.6 -2.5 23 164-186 10-32 (74)
496 3zv4_A CIS-2,3-dihydrobiphenyl 33.3 1.4E+02 0.0049 21.9 8.8 82 8-101 5-87 (281)
497 1jvn_A Glutamine, bifunctional 33.2 1.4E+02 0.0047 24.9 7.2 65 66-133 469-543 (555)
498 2khz_A C-MYC-responsive protei 33.1 44 0.0015 23.0 3.6 72 63-140 77-152 (165)
499 3lop_A Substrate binding perip 33.0 1.5E+02 0.005 22.4 7.1 77 10-101 143-230 (364)
500 3noy_A 4-hydroxy-3-methylbut-2 33.0 97 0.0033 24.5 5.8 57 66-126 60-116 (366)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.97 E-value=1.4e-29 Score=177.24 Aligned_cols=124 Identities=27% Similarity=0.531 Sum_probs=112.6
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCce-EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
+..++|||||||++..+..++..|+..||. +..+.+|.+|++.+. ..+||+|++|+.||++||+++++
T Consensus 9 m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~-----------~~~~DlillD~~MP~mdG~el~~ 77 (134)
T 3to5_A 9 LNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK-----------KGDFDFVVTDWNMPGMQGIDLLK 77 (134)
T ss_dssp CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH-----------HHCCSEEEEESCCSSSCHHHHHH
T ss_pred hCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH-----------hCCCCEEEEcCCCCCCCHHHHHH
Confidence 456789999999999999999999999986 567999999999994 44577999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.||+....+++|||++|+..+.+...++++.||++|+.|||+.++|...+++++++
T Consensus 78 ~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 78 NIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp HHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred HHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99987655689999999999999999999999999999999999999999988753
No 2
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.93 E-value=1e-25 Score=168.74 Aligned_cols=167 Identities=22% Similarity=0.350 Sum_probs=134.2
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCC-ceE-EEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSS-YQV-TAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~-~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
.+++|||+||++..+..+...|+..+ +.+ ..+.++.++++.+.. ..||+|++|+.+|+++|+++++.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~-----------~~~dlvllD~~lp~~~g~~~~~~ 72 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-----------LDPDLILLDLNMPGMNGLETLDK 72 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH-----------HCCSEEEEETTSTTSCHHHHHHH
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh-----------cCCCEEEEeCCCCCCcHHHHHHH
Confidence 34799999999999999999998764 877 578999999999843 34679999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccc--ccc-ccccccc
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNIN--NKR-KGLEEID 161 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~ 161 (187)
+++..+ .+|||++|+..+.+....+++.|+++|+.||++.++|..+++.+..+............ ... .......
T Consensus 73 lr~~~~--~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (215)
T 1a04_A 73 LREKSL--SGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTER 150 (215)
T ss_dssp HHHSCC--CSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHC-------CC
T ss_pred HHHhCC--CCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecCHHHHHHHHHHhcccccCCCc
Confidence 999866 89999999999999999999999999999999999999999999987543221110000 000 0000112
Q ss_pred cchhhhhhcccccccCCCCCCCccC
Q 046192 162 SADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 162 ~~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
....++.+|.+++.++.+|.|++||
T Consensus 151 ~~~~Lt~rE~~vl~~l~~g~s~~~I 175 (215)
T 1a04_A 151 DVNQLTPRERDILKLIAQGLPNKMI 175 (215)
T ss_dssp CGGGSCHHHHHHHHHHHTTCCHHHH
T ss_pred cccCCCHHHHHHHHHHHcCCCHHHH
Confidence 2346899999999999999999886
No 3
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.93 E-value=3.8e-26 Score=175.34 Aligned_cols=166 Identities=16% Similarity=0.267 Sum_probs=134.6
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
.+++||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.+|+++|+++++.|+
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~DlvllD~~lp~~~G~~l~~~lr 104 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE-----------DHPDLILLDLGLPDFDGGDVVQRLR 104 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------SCCSEEEEECCSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------CCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 45799999999999999999999999999999999999999843 4567999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCcc--ccccccccccccch
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNI--NNKRKGLEEIDSAD 164 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 164 (187)
+ .+ .+|||++|+..+.....++++.||++|+.||++.++|..+++.++++........... ..............
T Consensus 105 ~-~~--~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (249)
T 3q9s_A 105 K-NS--ALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGEEL 181 (249)
T ss_dssp T-TC--CCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTEEE
T ss_pred c-CC--CCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCEEe
Confidence 8 44 8999999999999999999999999999999999999999999998754321110000 00000011112223
Q ss_pred hhhhhcccccccCCCC----CCCccC
Q 046192 165 RTRTRLNDTIDINNDG----LPDLEI 186 (187)
Q Consensus 165 ~~~~~e~~~l~l~~~g----~~~~ei 186 (187)
.++.+|.++|.++.+| +|++||
T Consensus 182 ~LT~rE~evL~ll~~g~~~~~s~~eI 207 (249)
T 3q9s_A 182 RLSPKEFDILALLIRQPGRVYSRQEI 207 (249)
T ss_dssp CCCHHHHHHHHHHHHSTTCCCCHHHH
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHH
Confidence 5899999999999998 999886
No 4
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.93 E-value=1.7e-24 Score=148.31 Aligned_cols=119 Identities=31% Similarity=0.473 Sum_probs=109.6
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|||+||++..+..+...|+..||.+..+.++.++++.+. ...||+|++|+.||+++|+++++.+++.
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~-----------~~~~dlvllD~~~p~~~g~~~~~~l~~~ 71 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-----------EFTPDLIVLXIMMPVMDGFTVLKKLQEK 71 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT-----------TBCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-----------hcCCCEEEEeccCCCCcHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999994 4456799999999999999999999987
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
...+++|||++|+..+......+++.|+++|+.||++.++|...++++++
T Consensus 72 ~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 72 EEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp TTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred ccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 54458999999999999999999999999999999999999999988764
No 5
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.93 E-value=4e-26 Score=170.01 Aligned_cols=160 Identities=21% Similarity=0.325 Sum_probs=134.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+|||+||++..+..+...|+..||.+..+.++.++++.+ ....||+|++|+.+|+++|+++++.+++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~lp~~~g~~~~~~l~~ 72 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHR-----------RPEQHGCLVLDMRMPGMSGIELQEQLTA 72 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHC-----------CTTSCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhh-----------hccCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 56899999999999999999998899999999999999988 3445779999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccccccccccccchhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNKRKGLEEIDSADRTR 167 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (187)
..+ ++|||++|+..+......+++.|+++|+.||++.++|..+++.+..+......... ..... ......++
T Consensus 73 ~~~--~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~----~~~~~--~~~~~~Lt 144 (208)
T 1yio_A 73 ISD--GIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARE----TQDQL--EQLFSSLT 144 (208)
T ss_dssp TTC--CCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHTSC
T ss_pred cCC--CCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhhhHHHHH----HHHHH--HHHHHhcC
Confidence 876 89999999999999999999999999999999999999999999877543211100 00000 01123588
Q ss_pred hhcccccccCCCCCCCccC
Q 046192 168 TRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 168 ~~e~~~l~l~~~g~~~~ei 186 (187)
.+|.+++.++.+|+|++||
T Consensus 145 ~rE~~vl~~l~~g~s~~~I 163 (208)
T 1yio_A 145 GREQQVLQLTIRGLMNKQI 163 (208)
T ss_dssp HHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHcCCcHHHH
Confidence 8999999999999999886
No 6
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.93 E-value=4.1e-27 Score=162.16 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=103.9
Q ss_pred CCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHH
Q 046192 3 MVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDL 81 (187)
Q Consensus 3 ~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 81 (187)
.|+.+++|||||||++..+..++..|+..||.|+ .+.++.+|++.+. ..+||+|++|+.||+++|+++
T Consensus 3 ~m~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~-----------~~~~DlvllDi~mP~~~G~el 71 (123)
T 2lpm_A 3 HMTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR-----------KGQFDIAIIDVNLDGEPSYPV 71 (123)
T ss_dssp CCCCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH-----------HCCSSEEEECSSSSSCCSHHH
T ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------hCCCCEEEEecCCCCCCHHHH
Confidence 4678889999999999999999999999999986 6899999999994 445779999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 82 LRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
++.+|+. ++|||++|++++.... .+.|+.+|+.|||+.++|..+++++.+
T Consensus 72 ~~~lr~~----~ipvI~lTa~~~~~~~---~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 72 ADILAER----NVPFIFATGYGSKGLD---TRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp HHHHHHT----CCSSCCBCTTCTTSCC---SSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred HHHHHcC----CCCEEEEecCccHHHH---HhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 9999973 7899999998765543 467999999999999999998877654
No 7
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.93 E-value=2.6e-25 Score=170.50 Aligned_cols=168 Identities=21% Similarity=0.313 Sum_probs=133.6
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
.++++||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.+
T Consensus 21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~dlvllD~~lp~~~g~~~~~~l 89 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE-----------TRPDAVILDVXMPGMDGFGVLRRL 89 (250)
T ss_dssp CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHH
Confidence 346899999999999999999999999999999999999999943 456799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCcc---------cccccc
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNI---------NNKRKG 156 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~---------~~~~~~ 156 (187)
++..+ ++|||++|+..+......+++.||++|+.||++.++|..+++.++++........... ......
T Consensus 90 r~~~~--~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (250)
T 3r0j_A 90 RADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHE 167 (250)
T ss_dssp HHTTC--CCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHCC------CCEEEETTEEEETTTCC
T ss_pred HhcCC--CCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccceEEEECCEEEeccccE
Confidence 99876 8999999999999999999999999999999999999999999987643221100000 000000
Q ss_pred ccccccchhhhhhcccccccCCC----CCCCccC
Q 046192 157 LEEIDSADRTRTRLNDTIDINND----GLPDLEI 186 (187)
Q Consensus 157 ~~~~~~~~~~~~~e~~~l~l~~~----g~~~~ei 186 (187)
...-.....++.+|.++|.++.. ++|++||
T Consensus 168 ~~~~~~~~~LT~rE~~iL~~l~~~~~~~~s~~~i 201 (250)
T 3r0j_A 168 VWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKI 201 (250)
T ss_dssp EEETTEEECCCHHHHHHHHHHHHTTTCCBCHHHH
T ss_pred EEECCEEEecCHHHHHHHHHHHHCCCceEcHHHH
Confidence 01111223589999999999944 4887776
No 8
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.92 E-value=3.6e-24 Score=149.38 Aligned_cols=123 Identities=22% Similarity=0.418 Sum_probs=111.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
+.+|||+||++..+..+...|+..||.|..+.++.++++.+. ...||+|++|+.||+++|+++++.+++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvl~D~~lp~~~g~~~~~~lr~ 72 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY-----------KNLPDALICDVLLPGIDGYTLCKRVRQ 72 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 479999999999999999999999999999999999999994 345679999999999999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
......+|||++|+..+......+++.|+++|+.||++.++|..++++++.+..
T Consensus 73 ~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 73 HPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp SGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred CCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 643348999999999999999999999999999999999999999999987643
No 9
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.92 E-value=1.3e-23 Score=149.50 Aligned_cols=127 Identities=31% Similarity=0.550 Sum_probs=113.5
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
|+..+.+|||+||++..+..+...|+..||.+..+.++.++++.+. ..+||+||+|+.+|+.+|+++++
T Consensus 3 ~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~dlii~D~~l~~~~g~~~~~ 71 (154)
T 3gt7_A 3 LSNRAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS-----------LTRPDLIISDVLMPEMDGYALCR 71 (154)
T ss_dssp ----CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT-----------TCCCSEEEEESCCSSSCHHHHHH
T ss_pred cccCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHH
Confidence 3556789999999999999999999999999999999999999994 44577999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
.+++....+.+|||++++..+......+++.|+++|+.||++.++|..+++.++.+..
T Consensus 72 ~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 72 WLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp HHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9998753348999999999999999999999999999999999999999999998754
No 10
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.92 E-value=4.6e-25 Score=165.98 Aligned_cols=165 Identities=18% Similarity=0.244 Sum_probs=133.6
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++|||+||++..+..+...|+..||.+..+.++.++++.+.. ..||+|++|+.+|+++|+++++.+++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------~~~dlvllD~~l~~~~g~~~~~~lr~~ 71 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN-----------EPFDVVILDIMLPVHDGWEILKSMRES 71 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEEESCCSSSCHHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999843 456799999999999999999999998
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCc-----cccccccccccccc
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNN-----INNKRKGLEEIDSA 163 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 163 (187)
.+ ++|||++|+..+......+++.|+++|+.||++.++|..+++.+.++.......... ..........-...
T Consensus 72 ~~--~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (225)
T 1kgs_A 72 GV--NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKE 149 (225)
T ss_dssp TC--CCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSCSSEEEETTEEEETTTTEEEETTEE
T ss_pred CC--CCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcccccCceEEECCEEEecccCEEEECCEE
Confidence 76 899999999998999999999999999999999999999999998875432211000 00000000001122
Q ss_pred hhhhhhcccccccCCCC----CCCccC
Q 046192 164 DRTRTRLNDTIDINNDG----LPDLEI 186 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~g----~~~~ei 186 (187)
..++.+|.+++.++.+| +|++||
T Consensus 150 ~~Lt~rE~~vL~~l~~~~~~~~s~~eI 176 (225)
T 1kgs_A 150 IDLTKKEYQILEYLVMNKNRVVTKEEL 176 (225)
T ss_dssp ECCCHHHHHHHHHHHHTTTSCEEHHHH
T ss_pred EecCHHHHHHHHHHHhCCCcccCHHHH
Confidence 35899999999999999 888776
No 11
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.91 E-value=5.3e-24 Score=148.34 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=112.5
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~ 83 (187)
..+.+|||+||++..+..+...|+..||.+..+.++.++++.+ ...+||+||+|+.+|+ .+|+++++
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~D~~l~~~~~~g~~~~~ 72 (136)
T 3kto_A 4 NHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQ-----------ISDDAIGMIIEAHLEDKKDSGIELLE 72 (136)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSC-----------CCTTEEEEEEETTGGGBTTHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH-----------hccCCCEEEEeCcCCCCCccHHHHHH
Confidence 4467999999999999999999999999999999999999888 4445779999999999 99999999
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
.+++..+ ++|||++|+..+......+++.|+++|+.||++.++|..+++++..+...
T Consensus 73 ~l~~~~~--~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 73 TLVKRGF--HLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp HHHHTTC--CCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred HHHhCCC--CCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 9999876 89999999999999999999999999999999999999999999988654
No 12
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.91 E-value=8.3e-26 Score=170.61 Aligned_cols=171 Identities=13% Similarity=0.097 Sum_probs=131.0
Q ss_pred CCCCCceEEEEEeCCHHHHHHHHHHHHh-CCceEEE-eCCHHHHHHH-HhccCcccccccccccccEEEEeccCCCCCHH
Q 046192 3 MVTDSQFHVLAVDDSIIDRKLIERLLKT-SSYQVTA-VDSGNKALEF-LGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY 79 (187)
Q Consensus 3 ~~~~~~~~ilivd~~~~~~~~l~~~l~~-~~~~v~~-~~~~~~a~~~-l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~ 79 (187)
|....+++||||||++..+..+...|+. .||.+.. +.++.+++.. + ....||+||+|+.||+++|+
T Consensus 2 M~~~~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~-----------~~~~~dlvllD~~mp~~~G~ 70 (225)
T 3klo_A 2 MKDENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKP-----------ESRSIQMLVIDYSRISDDVL 70 (225)
T ss_dssp --CCSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCS-----------GGGGCCEEEEEGGGCCHHHH
T ss_pred CCCCCceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHh-----------hccCCCEEEEeCCCCCCCHH
Confidence 3445678999999999999999999984 5888865 4556665543 4 33457899999999999999
Q ss_pred HHHHHHHh-hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCcc--cccc--
Q 046192 80 DLLRKIKE-SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNI--NNKR-- 154 (187)
Q Consensus 80 ~~~~~l~~-~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~--~~~~-- 154 (187)
++++.+++ ..+ ++|||++|+..+......+++.||++|+.||++.++|..+++.+.++........... ....
T Consensus 71 ~~~~~lr~~~~~--~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (225)
T 3klo_A 71 TDYSSFKHISCP--DAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAG 148 (225)
T ss_dssp HHHHHHHHHHCT--TCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCC--CCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeCHHHHHHHHHHhhcc
Confidence 99999998 666 8999999999998999999999999999999999999999999998754321100000 0000
Q ss_pred ccccccccchhhhhhcccccccCCCCCCCccC
Q 046192 155 KGLEEIDSADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 155 ~~~~~~~~~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
...........++.+|.+++.++.+|+|++||
T Consensus 149 ~~~~~~~~~~~Lt~rE~~vL~~l~~g~s~~~I 180 (225)
T 3klo_A 149 NSVVTSQMYAKLTKREQQIIKLLGSGASNIEI 180 (225)
T ss_dssp CCCCCCHHHHTSCHHHHHHHHHHTTTCCHHHH
T ss_pred cccccccccccCCHHHHHHHHHHHcCCCHHHH
Confidence 00001112345899999999999999999886
No 13
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.91 E-value=2.1e-23 Score=142.42 Aligned_cols=117 Identities=23% Similarity=0.427 Sum_probs=107.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|||+||++..+..+...|+..||.+..+.++.++++.+. ..+||+|++|+.+|+++|+++++.+++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-----------ELQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------TTCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh-----------hCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999994 3456799999999999999999999974
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
. .+|+|++|+..+......+++.|+++|+.||++.++|..+++.+++.
T Consensus 72 ~---~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 72 Y---DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp C---CSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred C---CCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 3 78999999999999999999999999999999999999999887753
No 14
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.91 E-value=7.7e-25 Score=165.59 Aligned_cols=168 Identities=21% Similarity=0.277 Sum_probs=134.6
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
...++|||+||++..+..+...|+..||.+..+.++.++++.+.. ..||+|++|+.+|+++|+++++.+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------~~~dlvllD~~l~~~~g~~~~~~l 73 (233)
T 1ys7_A 5 VTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE-----------NRPDAIVLDINMPVLDGVSVVTAL 73 (233)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHH
Confidence 345799999999999999999999999999999999999999843 456799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccC-CCcc--ccc--c---ccc
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKE-PNNI--NNK--R---KGL 157 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~-~~~~--~~~--~---~~~ 157 (187)
++..+ .+|||++|+..+......+++.||++|+.||++.++|..+++.+.++....... .... ... . ...
T Consensus 74 ~~~~~--~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (233)
T 1ys7_A 74 RAMDN--DVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRA 151 (233)
T ss_dssp HHTTC--CCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEETTEEEETTTTEE
T ss_pred HhcCC--CCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccccccccCcccccCCeEEccCccEE
Confidence 98766 899999999998888899999999999999999999999999998875431111 0000 000 0 000
Q ss_pred cccccchhhhhhcccccccCCCC----CCCccC
Q 046192 158 EEIDSADRTRTRLNDTIDINNDG----LPDLEI 186 (187)
Q Consensus 158 ~~~~~~~~~~~~e~~~l~l~~~g----~~~~ei 186 (187)
..-.....++.+|.+++.++.+| +|++||
T Consensus 152 ~~~~~~~~Lt~rE~~vL~~l~~g~~~~~s~~~I 184 (233)
T 1ys7_A 152 RVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQL 184 (233)
T ss_dssp EETTEECCCCHHHHHHHHHHHHTTTCCBCHHHH
T ss_pred EECCEEeccCHHHHHHHHHHHhCCCCeEcHHHH
Confidence 00112235899999999999999 888876
No 15
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.91 E-value=8.2e-24 Score=155.03 Aligned_cols=122 Identities=16% Similarity=0.297 Sum_probs=112.5
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++.+||||||++..+..+...|+..||.|..+.++.++++.+. ...||+||+|+.||+++|+++++.++
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvl~D~~lp~~~g~~~~~~l~ 74 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG-----------AEKFEFITVXLHLGNDSGLSLIAPLC 74 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT-----------TSCCSEEEECSEETTEESHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------hCCCCEEEEeccCCCccHHHHHHHHH
Confidence 4579999999999999999999999999999999999999994 44567999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
+..+ ++|||++|+..+.+....+++.||++|+.||++.++|..+++.+..+..
T Consensus 75 ~~~~--~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 75 DLQP--DARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp HHCT--TCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred hcCC--CCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 9876 8999999999999999999999999999999999999999988887654
No 16
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.91 E-value=5.2e-23 Score=142.58 Aligned_cols=120 Identities=19% Similarity=0.268 Sum_probs=110.9
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|||+||++..+..+...|+..||.+..+.++.++++.+.. ..||+|++|+.+|+++|+++++.+++.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN-----------EFFNLALFXIKLPDMEGTELLEKAHKL 72 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEECSBCSSSBHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc-----------CCCCEEEEecCCCCCchHHHHHHHHhh
Confidence 689999999999999999999889999999999999999843 456799999999999999999999987
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
.+ .+|+|++|+..+......+++.|+++|+.||++.++|..+++++..+..
T Consensus 73 ~~--~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 73 RP--GMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp CT--TSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CC--CCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence 76 8999999999999999999999999999999999999999999887654
No 17
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.91 E-value=9.8e-23 Score=139.88 Aligned_cols=119 Identities=23% Similarity=0.360 Sum_probs=109.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+|+|+||++..+..+...|+..||.+..+.++.++++.+. ...||++++|+.+|+++|+++++.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvi~D~~l~~~~g~~~~~~l~~ 71 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP-----------DVRNGVLVTDLRMPDMSGVELLRNLGD 71 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGG-----------GCCSEEEEEECCSTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-----------cCCCCEEEEECCCCCCCHHHHHHHHHh
Confidence 478999999999999999999989999999999999999884 345679999999999999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
..+ .+|+|++|+..+......+++.|+++|+.||++.++|..+++++..+
T Consensus 72 ~~~--~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 72 LKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp TTC--CCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred cCC--CCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 765 89999999999999999999999999999999999999999988764
No 18
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.91 E-value=4.6e-23 Score=142.31 Aligned_cols=123 Identities=26% Similarity=0.498 Sum_probs=109.1
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCce-EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
.+++|||+||++..+..++..|+..||. +..+.++.++++.+.. ...||+|++|+.+|+++|+++++.+
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~----------~~~~dlvi~D~~~p~~~g~~~~~~l 73 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDA----------NADTKVLITDWNMPEMNGLDLVKKV 73 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH----------CTTCCEEEECSCCSSSCHHHHHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh----------CCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3579999999999999999999999985 7789999999998842 2247799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
++....+.+|||++|+..+......+++.|+++|+.||++.++|..+++.++.+
T Consensus 74 r~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 74 RSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp HTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred HhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 986544589999999999999999999999999999999999999999988754
No 19
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.91 E-value=3.5e-23 Score=144.52 Aligned_cols=122 Identities=26% Similarity=0.393 Sum_probs=111.3
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|||+||++..+..+...|+..||.+..+.++.++++.+.. ..||+|++|+.+|+.+|+++++.+++.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------~~~dlvllD~~l~~~~g~~l~~~l~~~ 73 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER-----------SKPQLIILDLKLPDMSGEDVLDWINQN 73 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH-----------HCCSEEEECSBCSSSBHHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh-----------cCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 489999999999999999999889999999999999999843 346699999999999999999999987
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKE 143 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~ 143 (187)
.+ .+|||++++..+......+++.|+++|+.||++.++|..+++.+.++....
T Consensus 74 ~~--~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~~ 126 (137)
T 3cfy_A 74 DI--PTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLE 126 (137)
T ss_dssp TC--CCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred CC--CCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 65 899999999999999999999999999999999999999999988775443
No 20
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.91 E-value=3.3e-23 Score=144.12 Aligned_cols=126 Identities=20% Similarity=0.325 Sum_probs=114.1
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
....++|||+||++..+..+...|+..++.+..+.++.++++.+.. ..||+||+|+.+|+.+|+++++.
T Consensus 4 ~~~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~-----------~~~dlvi~d~~l~~~~g~~~~~~ 72 (137)
T 3hdg_A 4 REVALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL-----------HAPDVIITDIRMPKLGGLEMLDR 72 (137)
T ss_dssp ---CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH-----------HCCSEEEECSSCSSSCHHHHHHH
T ss_pred cccccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc-----------cCCCEEEEeCCCCCCCHHHHHHH
Confidence 3456899999999999999999999988999999999999999944 45669999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKE 143 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~ 143 (187)
+++..+ .+|||++++..+......+++.|+++|+.||++.++|..+++++.++....
T Consensus 73 l~~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 129 (137)
T 3hdg_A 73 IKAGGA--KPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAK 129 (137)
T ss_dssp HHHTTC--CCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCC--CCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhcC
Confidence 999876 899999999999999999999999999999999999999999999886543
No 21
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.91 E-value=2e-25 Score=168.63 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=133.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCC-ceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSS-YQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~-~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++||||||++..+..+...|+..| |.++ .+.++.++++.+.. ..||+||+|+.+|+++|+++++.++
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~-----------~~~dlvllD~~lp~~~g~~~~~~lr 70 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA-----------ARPDVAVLDVRLPDGNGIELCRDLL 70 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH-----------HCCSEEEECSEETTEEHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-----------cCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 689999999999999999999876 8855 69999999999843 3466999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCcc--ccccccccccccch
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNI--NNKRKGLEEIDSAD 164 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 164 (187)
+..+ .+|||++|+..+......+++.|+++|+.||++.++|..+++.+.++........... ..............
T Consensus 71 ~~~~--~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (225)
T 3c3w_A 71 SRMP--DLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLS 148 (225)
T ss_dssp HHCT--TCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCTTT
T ss_pred HhCC--CCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHHhcccccccccccC
Confidence 9876 8999999999999999999999999999999999999999999998754321110000 00000000002234
Q ss_pred hhhhhcccccccCCCCCCCccC
Q 046192 165 RTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 165 ~~~~~e~~~l~l~~~g~~~~ei 186 (187)
.++.+|.+++.++.+|+|++||
T Consensus 149 ~LT~rE~~vL~~l~~g~s~~eI 170 (225)
T 3c3w_A 149 GLTDQERTLLGLLSEGLTNKQI 170 (225)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHHHHCCCCHHHH
Confidence 5899999999999999999987
No 22
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.91 E-value=1.8e-24 Score=164.59 Aligned_cols=164 Identities=18% Similarity=0.300 Sum_probs=132.2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++|||+||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.+|+++|+++++.+++.
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------~~~dlvilD~~l~~~~g~~~~~~lr~~ 74 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE-----------LRPDLVLLDLMLPGMNGIDVCRVLRAD 74 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH-----------HCCSEEEEESSCSSSCHHHHHHHHHTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 699999999999999999999899999999999999999844 346699999999999999999999985
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCccccc-----cccccccccc
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNINNK-----RKGLEEIDSA 163 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 163 (187)
+ .+|||++|+..+......+++.||++|+.||++.++|..+++.+.++.............. ..........
T Consensus 75 -~--~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (238)
T 2gwr_A 75 -S--GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLSIADVEIDVPAHKVTRNGEQ 151 (238)
T ss_dssp -C--CCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEEETTEEEETTTTEEEETTEE
T ss_pred -C--CCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcccCcccceecCceEEcccccEEEECCEE
Confidence 3 7999999999999999999999999999999999999999999998753321110000000 0000001112
Q ss_pred hhhhhhcccccccCCCC----CCCccC
Q 046192 164 DRTRTRLNDTIDINNDG----LPDLEI 186 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~g----~~~~ei 186 (187)
..++.+|.++|.++.+| +|++||
T Consensus 152 ~~LT~rE~~vL~~l~~~~~~~~s~~eI 178 (238)
T 2gwr_A 152 ISLTPLEFDLLVALARKPRQVFTRDVL 178 (238)
T ss_dssp ECCCHHHHHHHHHHHHSTTCCBCHHHH
T ss_pred cccCHHHHHHHHHHHHCCCceecHHHH
Confidence 35899999999999999 888876
No 23
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.91 E-value=5.6e-23 Score=142.79 Aligned_cols=125 Identities=22% Similarity=0.402 Sum_probs=108.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
.++||||||++..+..+...|+..|+ .+..+.++.++++.+....+ ....||+|++|+.||+++|+++++.++
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~------~~~~~dlvllD~~mp~~~G~~~~~~lr 75 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS------KGENYNMIFMDVQMPKVDGLLSTKMIR 75 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHH------HTCCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHh------cCCCCCEEEEeCCCCCCChHHHHHHHH
Confidence 36899999999999999999998887 47789999999998854211 114578999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+..+ ..+|||++|+..+......+++.|+++|+.||++.++|..+++.+...
T Consensus 76 ~~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 76 RDLG-YTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp HHSC-CCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred hhcC-CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 7432 268999999999999999999999999999999999999999888754
No 24
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.91 E-value=9.3e-23 Score=139.50 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=109.1
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|||+||++..+..+...|+..||.+..+.++.+++..+.. ..||++++|+.+|+.+|+++++.+++.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------~~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK-----------ERPDLVLLDMKIPGMDGIEILKRMKVI 72 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCTTCCHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-----------cCCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 689999999999999999999889999999999999999843 346799999999999999999999988
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+ .+|+|++|+..+......+++.|+++|+.||++.++|..+++++..+
T Consensus 73 ~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 73 DE--NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp CT--TCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred CC--CCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 66 89999999999999999999999999999999999999999888754
No 25
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.91 E-value=9e-23 Score=141.74 Aligned_cols=130 Identities=25% Similarity=0.387 Sum_probs=110.4
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHH
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYD 80 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~ 80 (187)
|++ +..+.+|||+||++..+..+...|+..||.+..+.++.+++..+... .+||+||+|+.+|+.+|++
T Consensus 1 Ms~-~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~----------~~~dlvi~D~~l~~~~g~~ 69 (136)
T 3hdv_A 1 MSL-VAARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ----------KRIGLMITDLRMQPESGLD 69 (136)
T ss_dssp -------CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC----------TTEEEEEECSCCSSSCHHH
T ss_pred CCC-CCCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC----------CCCcEEEEeccCCCCCHHH
Confidence 443 34568999999999999999999999999999999999999988432 2377999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 81 LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
+++.+++.. .+.+|||++++..+......+++.|+++|+.||++.++|..+++++..+...
T Consensus 70 ~~~~l~~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (136)
T 3hdv_A 70 LIRTIRASE-RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEG 130 (136)
T ss_dssp HHHHHHTST-TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchh
Confidence 999999873 2389999999999999999999999999999999999999999999987544
No 26
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.90 E-value=1.6e-22 Score=141.62 Aligned_cols=125 Identities=24% Similarity=0.344 Sum_probs=114.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
+++|||+||++..+..+...|+..||.+..+.++.++++.+... ...||+||+|+.+|+.+|+++++.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~---------~~~~dlvi~d~~l~~~~g~~~~~~l~~ 73 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTEN---------CNSIDVVITDMKMPKLSGMDILREIKK 73 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT---------TTTCCEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhC---------CCCCCEEEEeCCCCCCcHHHHHHHHHH
Confidence 37999999999999999999999999999999999999998421 345779999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKE 143 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~ 143 (187)
..+ .+|||++++..+......+++.|+++|+.||++.++|..+++.++++....
T Consensus 74 ~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 127 (143)
T 3jte_A 74 ITP--HMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLL 127 (143)
T ss_dssp HCT--TCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred hCC--CCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 876 899999999999999999999999999999999999999999999876543
No 27
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.90 E-value=9.1e-23 Score=140.67 Aligned_cols=123 Identities=27% Similarity=0.431 Sum_probs=105.1
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
.....+|||+||++..+..+...|+..||.+..+.++.++++.+. ..+||+|++|+.+|+.+|+++++.
T Consensus 4 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~~l~~~~g~~~~~~ 72 (130)
T 3eod_A 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-----------GFTPDLMICDIAMPRMNGLKLLEH 72 (130)
T ss_dssp TTTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT-----------TCCCSEEEECCC-----CHHHHHH
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh-----------cCCCCEEEEecCCCCCCHHHHHHH
Confidence 345679999999999999999999999999999999999999994 445779999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCC-ChHHHHHHHHHHhhhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV-QLADVNKLKPHLMKGI 140 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~-~~~~l~~~i~~~~~~~ 140 (187)
+++..+ .+|+|++|+..+......+++.|+++|+.||+ +.++|..+++.++.+.
T Consensus 73 l~~~~~--~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 73 IRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp HHHTTC--CCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred HHhcCC--CCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999876 89999999999999999999999999999999 8999999999988763
No 28
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.90 E-value=1.2e-22 Score=141.93 Aligned_cols=131 Identities=21% Similarity=0.380 Sum_probs=110.8
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHh-CCce-EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKT-SSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~-~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
|++.+..+++|||+||++..+..+...|+. .||. +..+.++.++++.+. ...||+|++|+.+|+.+|
T Consensus 1 M~~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-----------~~~~dlii~d~~l~~~~g 69 (143)
T 3cnb_A 1 MSLNVKNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH-----------TVKPDVVMLDLMMVGMDG 69 (143)
T ss_dssp --------CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH-----------HTCCSEEEEETTCTTSCH
T ss_pred CcccccCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH-----------hcCCCEEEEecccCCCcH
Confidence 666667789999999999999999999998 8998 888999999999994 345679999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
+++++.+++....+.+|||++++..+......+++.|+++|+.||++.++|..+++++.++...
T Consensus 70 ~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 70 FSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143)
T ss_dssp HHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999984222389999999999999999999999999999999999999999999876543
No 29
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.90 E-value=9.3e-23 Score=141.47 Aligned_cols=121 Identities=21% Similarity=0.389 Sum_probs=107.0
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++|+|+||++..+..+...|+..| +.+..+.++.++++.+.. ..||+|++|+.+|+++|+++++.++
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~-----------~~~dlvilD~~lp~~~g~~~~~~l~ 72 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE-----------YNPNVVILDIEMPGMTGLEVLAEIR 72 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH-----------HCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh-----------cCCCEEEEecCCCCCCHHHHHHHHH
Confidence 789999999999999999998876 456679999999999843 3467999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
+..+ .+|||++|+..+.....++++.|+++|+.||++.++|..+++++..+...
T Consensus 73 ~~~~--~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 126 (133)
T 3b2n_A 73 KKHL--NIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKE 126 (133)
T ss_dssp HTTC--SCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC----
T ss_pred HHCC--CCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 8765 89999999999999999999999999999999999999999999876543
No 30
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.90 E-value=3.6e-23 Score=144.58 Aligned_cols=124 Identities=19% Similarity=0.313 Sum_probs=111.5
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHh-CCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCC-CCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKT-SSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~-~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l 85 (187)
+.+|||+||++..+..+...|+. .||.+..+.++.++++.+.. ...||+||+|+.+| +.+|+++++.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~----------~~~~dlvi~D~~l~~~~~g~~~~~~l 73 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKD----------LDSITLIIMDIAFPVEKEGLEVLSAI 73 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTT----------CCCCSEEEECSCSSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhc----------CCCCcEEEEeCCCCCCCcHHHHHHHH
Confidence 57999999999999999999998 89999999999999999843 04577999999999 99999999999
Q ss_pred Hh--hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhh
Q 046192 86 KE--SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKE 143 (187)
Q Consensus 86 ~~--~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~ 143 (187)
++ ..+ .+|||++|+..+......+++.|+++|+.||++.++|..+++.++++....
T Consensus 74 ~~~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (140)
T 3lua_A 74 RNNSRTA--NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQRF 131 (140)
T ss_dssp HHSGGGT--TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC----
T ss_pred HhCcccC--CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcccc
Confidence 99 555 999999999999999999999999999999999999999999999876543
No 31
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.90 E-value=2e-23 Score=145.73 Aligned_cols=127 Identities=15% Similarity=0.271 Sum_probs=110.7
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
+.++.+|||+||++..+..+...|+..||.+..+.++.++++.+. ..+||+||+|+.+|+.+|+++++.
T Consensus 3 ~~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~~l~~~~g~~~~~~ 71 (140)
T 3grc_A 3 LAPRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVA-----------RRPYAAMTVDLNLPDQDGVSLIRA 71 (140)
T ss_dssp --CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-----------HSCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHH
Confidence 344689999999999999999999999999999999999999994 345679999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHH-HHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRIN-RCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~-~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
+++....+++|||++++..+..... .+++.|+++|+.||++.++|..++++++++...
T Consensus 72 l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 72 LRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp HHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred HHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 9983222389999999987777776 889999999999999999999999999987554
No 32
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.4e-22 Score=142.54 Aligned_cols=122 Identities=28% Similarity=0.524 Sum_probs=105.5
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
..++|||+||++..+..+...|+..||.+..+.++.++++.+. ...||+|++|+.||+++|+++++.++
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvl~D~~mp~~~g~~~~~~lr 81 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA-----------EEDYDAVIVDLHMPGMNGLDMLKQLR 81 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH-----------HSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3579999999999999999999999999999999999999984 34567999999999999999999998
Q ss_pred hhc--CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 87 ESA--SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 87 ~~~--~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+.. ....+|+|++|+..+.+....+++.|+++|+.||++.++|..+++.+..+
T Consensus 82 ~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 82 VMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp HHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred hchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 542 22368999999999999999999999999999999999999999888755
No 33
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.90 E-value=2.3e-22 Score=142.16 Aligned_cols=135 Identities=27% Similarity=0.383 Sum_probs=110.9
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
|...+...++|||+||++..+..+...|+..|+ .+..+.++.++++.+....+. .....||+|++|+.+|+++|
T Consensus 1 m~~~~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~----~~~~~~dlillD~~lp~~~g 76 (149)
T 1i3c_A 1 MSDESNPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEY----ENSPRPNLILLDLNLPKKDG 76 (149)
T ss_dssp -----CCCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGG----TTCCCCSEEEECSCCSSSCH
T ss_pred CCcccCCCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhcccc----ccCCCCCEEEEeCCCCCCcH
Confidence 444445568999999999999999999998876 778899999999998531100 00135789999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+++++.+++....+.+|||++|+..+......+++.||++|+.||++.++|..+++++.+.
T Consensus 77 ~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 77 REVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp HHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 9999999986433488999999999999999999999999999999999999999988754
No 34
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.90 E-value=7.6e-24 Score=159.91 Aligned_cols=164 Identities=18% Similarity=0.273 Sum_probs=131.9
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++|||+||++..+..+...|+..||.+..+.++.++++.+.. ..||+|++|+.+|+++|+++++.+++.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~dlvllD~~l~~~~g~~~~~~l~~~ 73 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR-----------AGADIVLLDLMLPGMSGTDVCKQLRAR 73 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH-----------HCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------cCCCEEEEECCCCCCCHHHHHHHHHcC
Confidence 699999999999999999999899999999999999999843 346799999999999999999999985
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccC--CCcc--ccc-----cccccc
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKE--PNNI--NNK-----RKGLEE 159 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~--~~~~--~~~-----~~~~~~ 159 (187)
+ .+|||++|+..+......+++.||++|+.||++.++|..+++.+.++....... .... ... ......
T Consensus 74 -~--~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (230)
T 2oqr_A 74 -S--SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSV 150 (230)
T ss_dssp -C--SCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEETTEEEETTTTEEEE
T ss_pred -C--CCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccccccccceeecCEEEeccccEEEE
Confidence 4 899999999988888999999999999999999999999999999875321110 0000 000 000000
Q ss_pred cccchhhhhhcccccccCCCC----CCCccC
Q 046192 160 IDSADRTRTRLNDTIDINNDG----LPDLEI 186 (187)
Q Consensus 160 ~~~~~~~~~~e~~~l~l~~~g----~~~~ei 186 (187)
-.....++.+|.+++.++.+| +|++||
T Consensus 151 ~~~~~~Lt~rE~~vL~~l~~~~~~~~s~~~I 181 (230)
T 2oqr_A 151 NGDTITLPLKEFDLLEYLMRNSGRVLTRGQL 181 (230)
T ss_dssp SSBCCCCCHHHHHHHHHHHHTTTSCEEHHHH
T ss_pred CCeeeecCHHHHHHHHHHHhCCCceEcHHHH
Confidence 112235889999999999998 888776
No 35
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.90 E-value=1.6e-22 Score=139.64 Aligned_cols=127 Identities=21% Similarity=0.352 Sum_probs=104.5
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
++..+.+|||+||++..+..+...|+..||.+..+.++.++++.+.. ..||+||+|+.+|+.+|+++++
T Consensus 2 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------~~~dlii~d~~l~~~~g~~~~~ 70 (132)
T 3lte_A 2 SLKQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST-----------FEPAIMTLDLSMPKLDGLDVIR 70 (132)
T ss_dssp -----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------TCCSEEEEESCBTTBCHHHHHH
T ss_pred CCCCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-----------cCCCEEEEecCCCCCCHHHHHH
Confidence 34557899999999999999999999999999999999999999943 4567999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
.+++..+...++|++++.... .....+++.|+++|+.||++.++|..++++...+...
T Consensus 71 ~l~~~~~~~~~~ii~~~~~~~-~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (132)
T 3lte_A 71 SLRQNKVANQPKILVVSGLDK-AKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGHH 128 (132)
T ss_dssp HHHTTTCSSCCEEEEECCSCS-HHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC----
T ss_pred HHHhcCccCCCeEEEEeCCCh-HHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCCC
Confidence 999876433566666666544 4888999999999999999999999999998877543
No 36
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.90 E-value=3.1e-22 Score=136.08 Aligned_cols=118 Identities=20% Similarity=0.392 Sum_probs=108.5
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++|+|+||++..+..+...|+..||.+..+.++.+++..+. ...||++++|+.+|+++|+++++.+++.
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-----------~~~~dlil~D~~l~~~~g~~~~~~l~~~ 69 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN-----------EHIPDIAIVDLGLPDEDGLSLIRRWRSN 69 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEECSCCSSSCHHHHHHHHHHT
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHh-----------ccCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 37999999999999999999999999999999999999984 3456799999999999999999999987
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+ .+|+|++++..+......+++.|+++|+.||++.++|...++++.+.
T Consensus 70 ~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 70 DV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp TC--CSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CC--CCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHh
Confidence 65 89999999999999999999999999999999999999999888754
No 37
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.90 E-value=2.7e-22 Score=142.29 Aligned_cols=124 Identities=19% Similarity=0.307 Sum_probs=114.3
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
..+.+|||+||++..+..+...|+..||.|..+.++.++++.+. ...||+||+|+.+|+.+|+++++.+
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvi~D~~l~~~~g~~~~~~l 80 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLA-----------SREVDLVISAAHLPQMDGPTLLARI 80 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHH-----------HSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHH-----------cCCCCEEEEeCCCCcCcHHHHHHHH
Confidence 34689999999999999999999999999999999999999994 3456799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhC-CCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEG-AEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~g-a~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
++..+ .+|||++++..+......+++.| +++|+.||++.++|..+++.++++...
T Consensus 81 ~~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 81 HQQYP--STTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp HHHCT--TSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HhHCC--CCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 99876 89999999999999999999999 999999999999999999999987544
No 38
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.90 E-value=2.5e-22 Score=140.93 Aligned_cols=125 Identities=24% Similarity=0.360 Sum_probs=111.6
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCce--EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQ--VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~--v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
..+.+|||+||++..+..+...|+..|+. +..+.++.++++.+. ...||+||+|+.+|+.+|+++++
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-----------~~~~dlii~D~~l~~~~g~~~~~ 71 (144)
T 3kht_A 3 LRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ-----------QAKYDLIILDIGLPIANGFEVMS 71 (144)
T ss_dssp --CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT-----------TCCCSEEEECTTCGGGCHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh-----------cCCCCEEEEeCCCCCCCHHHHHH
Confidence 34689999999999999999999999876 778999999999994 44577999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCC-ChHHHHHHHHHHhhhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV-QLADVNKLKPHLMKGIS 141 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~-~~~~l~~~i~~~~~~~~ 141 (187)
.+++....+.+|||++++..+......+++.|+++|+.||+ +.++|..+++.+++...
T Consensus 72 ~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 72 AVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp HHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHH
Confidence 99984333489999999999999999999999999999999 99999999999997743
No 39
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.90 E-value=1.1e-23 Score=146.41 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=110.2
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCC-ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSS-YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~-~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
..+.+|||+||++..+..+...|+..| |.+..+.++.++++.+ ...+||+||+|+.+|+.+|+++++.
T Consensus 12 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l-----------~~~~~dlvi~D~~l~~~~g~~~~~~ 80 (135)
T 3snk_A 12 TKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPP-----------ADTRPGIVILDLGGGDLLGKPGIVE 80 (135)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCC-----------TTCCCSEEEEEEETTGGGGSTTHHH
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHH-----------hccCCCEEEEeCCCCCchHHHHHHH
Confidence 345799999999999999999999999 9999999999998887 3445779999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+++..+ .+|||++|+..+......+++.|+++|+.||++.++|..+++++..+
T Consensus 81 l~~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 81 ARALWA--TVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp HHGGGT--TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred HHhhCC--CCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 999886 89999999999999999999999999999999999999999988765
No 40
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.90 E-value=1.4e-22 Score=139.35 Aligned_cols=123 Identities=22% Similarity=0.448 Sum_probs=109.4
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCc-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSY-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
..+++|||+||++..+..+...|+..|| .+..+.++.++++.+. ...||++++|+.+|+++|+++++.
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~l~~~~g~~~~~~ 72 (129)
T 1p6q_A 4 AEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA-----------QNPHHLVISDFNMPKMDGLGLLQA 72 (129)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH-----------TSCCSEEEECSSSCSSCHHHHHHH
T ss_pred cccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH-----------cCCCCEEEEeCCCCCCCHHHHHHH
Confidence 3457999999999999999999998898 7778999999999984 345679999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+++....+.+|+|++|+..+......+++.|+++|+.||++.++|..+++.+...
T Consensus 73 l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 73 VRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp HTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred HhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9986433489999999999999999999999999999999999999999887653
No 41
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.90 E-value=8.7e-23 Score=141.34 Aligned_cols=122 Identities=18% Similarity=0.320 Sum_probs=109.6
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
++|||+||++..+..+...|+..||.+. .+.++.++++.+.. ..||+|++|+.+|+.+|+++++.+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~-----------~~~dlii~d~~l~~~~g~~~~~~l~~ 70 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-----------LKPDIVIIDVDIPGVNGIQVLETLRK 70 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH-----------HCCSEEEEETTCSSSCHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh-----------cCCCEEEEecCCCCCChHHHHHHHHh
Confidence 6999999999999999999999999888 78999999999944 45669999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKE 143 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~ 143 (187)
..+ ++|||++|+..+......+++.|+++|+.||++.++|..+++.+.++....
T Consensus 71 ~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 124 (134)
T 3f6c_A 71 RQY--SGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 124 (134)
T ss_dssp TTC--CSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBC
T ss_pred cCC--CCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEe
Confidence 876 899999999999999999999999999999999999999999999875543
No 42
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.90 E-value=1.3e-22 Score=139.39 Aligned_cols=121 Identities=18% Similarity=0.225 Sum_probs=106.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
+.+|||+||++..+..+...|+..||.+..+.++.++++.+.. ..||+||+|+.+|+.+|+++++.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------~~~dlii~D~~l~~~~g~~~~~~l~~ 71 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST-----------RGYDAVFIDLNLPDTSGLALVKQLRA 71 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH-----------SCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3799999999999999999999999999999999999999943 45679999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
....+.+|||++++..+... ..++..|+++|+.||++.++|...++...++.
T Consensus 72 ~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 72 LPMEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp SCCSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred hhccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 73334899999999988888 88999999999999999999999998877653
No 43
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.90 E-value=4.5e-22 Score=140.71 Aligned_cols=123 Identities=24% Similarity=0.380 Sum_probs=112.0
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
..+++|||+||++..+..+...|+..+ +.+..+.++.++++.+. ...||+||+|+.+|+.+|+++++
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-----------~~~~dlii~D~~l~~~~g~~~~~ 86 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE-----------KESVDIAILDVEMPVKTGLEVLE 86 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT-----------TSCCSEEEECSSCSSSCHHHHHH
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh-----------ccCCCEEEEeCCCCCCcHHHHHH
Confidence 346899999999999999999999876 77888999999999994 44567999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
.+++..+ .+|||++++..+......+++.|+++|+.||++.++|..++++++++..
T Consensus 87 ~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 87 WIRSEKL--ETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp HHHHTTC--SCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred HHHHhCC--CCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 9999876 8999999999999999999999999999999999999999999998754
No 44
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.90 E-value=3.6e-22 Score=135.71 Aligned_cols=116 Identities=22% Similarity=0.426 Sum_probs=105.9
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceE-EEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQV-TAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
.+|+|+||++..+..+...|+..||.+ ..+.++.++++.+.. ..||++++|+.+|+.+|+++++.+++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~-----------~~~dlil~D~~l~~~~g~~~~~~l~~ 71 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE-----------LKPDIVTMDITMPEMNGIDAIKEIMK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----------HCCSEEEEECSCGGGCHHHHHHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh-----------cCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 589999999999999999999889984 578999999999843 34679999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
..+ .+|+|++|+..+......+++.|+++|+.||++.++|..+++++.
T Consensus 72 ~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 72 IDP--NAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp HCT--TCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred hCC--CCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 876 899999999999999999999999999999999999999988764
No 45
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.90 E-value=5.4e-22 Score=135.37 Aligned_cols=118 Identities=22% Similarity=0.455 Sum_probs=108.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+|+|+||++..+..+...|+..||.+..+.++.++++.+.. ..||++++|+.+|+.+|+++++.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------~~~dlvi~D~~l~~~~g~~~~~~l~~ 71 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-----------YDINLVIMDINLPGKNGLLLARELRE 71 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------SCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc-----------CCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 4689999999999999999999889999999999999999843 45679999999999999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
. + .+|+|++++..+......+++.|+++|+.||++.++|...++.+.++
T Consensus 72 ~-~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 72 Q-A--NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp H-C--CCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred C-C--CCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 7 4 89999999999999999999999999999999999999999888754
No 46
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.90 E-value=5.3e-22 Score=140.55 Aligned_cols=132 Identities=25% Similarity=0.443 Sum_probs=111.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
+++||||||++..+..+...|+..|+ .+..+.++.++++.+......+ ......||+||+|+.+|+++|+++++.+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~--~~~~~~~dliilD~~l~~~~g~~~~~~l 81 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSG--RVSAGRAQLVLLDLNLPDMTGIDILKLV 81 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSS--GGGTTCBEEEEECSBCSSSBHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccccc--ccccCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 58999999999999999999999998 8889999999999985221100 0013468899999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
++....+++|||++|+..+......+++.|+++|+.||++.++|..+++++.....
T Consensus 82 r~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 137 (152)
T 3heb_A 82 KENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFS 137 (152)
T ss_dssp HHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred HhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 98432348999999999999999999999999999999999999999999976543
No 47
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.89 E-value=7.8e-22 Score=135.49 Aligned_cols=122 Identities=25% Similarity=0.482 Sum_probs=108.4
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCc-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSY-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
..++|+|+||++..+..+...|+..|| .+..+.++.++++.+. ...||++++|+.+|+++|+++++.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~-----------~~~~dlvi~D~~l~~~~g~~l~~~l 71 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-----------AGGYGFVISDWNMPNMDGLELLKTI 71 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT-----------TCCCCEEEEESCCSSSCHHHHHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 457899999999999999999998898 6888999999999984 3457799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
++....+.+|+|++|+..+......+++.|+++|+.||++.++|..+++++.+.
T Consensus 72 ~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 72 RAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp HC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 985433489999999999999999999999999999999999999999888753
No 48
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.89 E-value=2.6e-22 Score=141.18 Aligned_cols=130 Identities=20% Similarity=0.325 Sum_probs=111.6
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHH
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYD 80 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~ 80 (187)
|.....++++|||+||++..+..+...|...||.|..+.++.+++..+.. ..||+||+|+.+|+.+|++
T Consensus 1 M~~~~~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------~~~dlii~d~~l~~~~g~~ 69 (147)
T 2zay_A 1 MSLAEGKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK-----------THPHLIITEANMPKISGMD 69 (147)
T ss_dssp -------CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCSSSCHHH
T ss_pred CCcccCCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc-----------CCCCEEEEcCCCCCCCHHH
Confidence 44455667899999999999999999999999999999999999999943 3567999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 81 LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
+++.+++....+.+|||++++..+......+++.|+++|+.||++.++|..+++.+.....
T Consensus 70 ~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 70 LFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp HHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999998322238999999999999999999999999999999999999999999887644
No 49
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.89 E-value=8.5e-22 Score=134.21 Aligned_cols=117 Identities=22% Similarity=0.384 Sum_probs=107.2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|||+||++..+..+...|+..||.+..+.++.++++.+. ...||++++|+.+|+++|+++++.+++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvi~d~~l~~~~g~~~~~~l~~- 70 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-----------NQSVDLILLDINLPDENGLMLTRALRE- 70 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEEESCCSSSCHHHHHHHHHT-
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh-----------cCCCCEEEEeCCCCCCChHHHHHHHHh-
Confidence 58999999999999999999988999999999999999884 345679999999999999999999998
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+ .+|+|++++..+......+++.|+++|+.||++.++|...++++.+.
T Consensus 71 ~~--~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 71 RS--TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp TC--CCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cC--CCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 44 89999999999999999999999999999999999999999888754
No 50
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.89 E-value=3.9e-22 Score=142.26 Aligned_cols=122 Identities=23% Similarity=0.397 Sum_probs=111.1
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
..+++|||+||++..+..+...|+..||.+. .+.++.++++.+....| .||+||+|+.+|+.+|+++++.
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~---------~~dliilD~~l~~~~g~~~~~~ 104 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYP---------NIDIVTLXITMPKMDGITCLSN 104 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG---------GCCEEEECSSCSSSCHHHHHHH
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCC---------CCCEEEEeccCCCccHHHHHHH
Confidence 3458999999999999999999999999988 89999999999954311 4679999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
|++..+ .+|||++++..+......+++.|+++|+.||++.++|..+++.++.
T Consensus 105 lr~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 105 IMEFDK--NARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp HHHHCT--TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred HHhhCC--CCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 999876 8999999999999999999999999999999999999999988764
No 51
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.89 E-value=2.4e-22 Score=138.93 Aligned_cols=122 Identities=23% Similarity=0.339 Sum_probs=105.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
+.+|||+||++..+..+...|+ .||.+..+.++.++++.+.. .+||+||+|+.+|+.+|+++++.+++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~-----------~~~dlvi~d~~l~~~~g~~~~~~l~~ 71 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA-----------HPPDVLISDVNMDGMDGYALCGHFRS 71 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH-----------SCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc-----------CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 5799999999999999999998 78999999999999999943 45679999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
..+.+++|||++++..+... ..+++.|+++|+.||++.++|..++++++.+...
T Consensus 72 ~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 72 EPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp STTTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CCccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 75445899999999887777 8999999999999999999999999999987544
No 52
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.89 E-value=1.3e-22 Score=141.94 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=110.7
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CCHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MTGYDLLRK 84 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~ 84 (187)
..+.+|||+||++..+..+...|+..||.+..+.++.++++.+.. ...||+||+|+.+|+ .+|+++++.
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------~~~~dlvi~D~~l~~~~~g~~~~~~ 72 (140)
T 3h5i_A 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSG----------GWYPDLILMDIELGEGMDGVQTALA 72 (140)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT----------TCCCSEEEEESSCSSSCCHHHHHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhc----------CCCCCEEEEeccCCCCCCHHHHHHH
Confidence 356899999999999999999999999999999999999999843 145779999999985 999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKE 143 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~ 143 (187)
+++. + .+|||++|+..+......+++.|+++|+.||++.++|..+++.+++..+..
T Consensus 73 l~~~-~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 128 (140)
T 3h5i_A 73 IQQI-S--ELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEAN 128 (140)
T ss_dssp HHHH-C--CCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-C--CCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 9986 4 899999999988888889999999999999999999999999999876543
No 53
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.89 E-value=4.8e-22 Score=138.56 Aligned_cols=120 Identities=18% Similarity=0.315 Sum_probs=109.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
.++|||+||++..+..+...|+..||.+..+.++.++++.+.. ..||+|++|+.+|+++|+++++.+++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------~~~dlvllD~~l~~~~g~~l~~~l~~ 72 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-----------NKYDLIFLEIILSDGDGWTLCKKIRN 72 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------CCCSEEEEESEETTEEHHHHHHHHHT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHHHHcc
Confidence 5799999999999999999999889999999999999999843 34679999999999999999999997
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
.. .+|||++++..+......+++.|+++|+.||++.++|..+++.+.++..
T Consensus 73 ~~---~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 73 VT---TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp TC---CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CC---CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 53 7899999999999999999999999999999999999999998887643
No 54
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.89 E-value=4.7e-22 Score=135.74 Aligned_cols=120 Identities=26% Similarity=0.423 Sum_probs=102.9
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+|+||++..+..+...|+..||.+..+.++.+++..+.. ..||++++|+.+|+++|+++++.+++.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~-----------~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE-----------NKPDLILMDIQLPEISGLEVTKWLKED 70 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-----------HCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc-----------CCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 479999999999999999999999999999999999998843 346799999999999999999999986
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
...+.+|+|++|+..+......+++.|+++|+.||++.++|..+++++..+
T Consensus 71 ~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 71 DDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp TTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred ccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 433489999999998888899999999999999999999999999888754
No 55
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.89 E-value=4e-22 Score=153.83 Aligned_cols=125 Identities=26% Similarity=0.407 Sum_probs=113.2
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
.+++||||||++..+..+...|+..|+.+..+.++.++++.+... ..||+|++|+.||+++|+++++.+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~----------~~~dlvllD~~mP~~dG~~l~~~lr 192 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQH----------PAIRLVLVDYYMPEIDGISLVRMLR 192 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC----------TTEEEEEECSCCSSSCHHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC----------CCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 357999999999999999999999999999999999999998422 2378999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
+..+...+|||++|+..+.....++++.||++|+.||++.++|...++++++...
T Consensus 193 ~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 193 ERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp HHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 9876567899999999999999999999999999999999999999999887643
No 56
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.89 E-value=9.8e-22 Score=137.69 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=112.0
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
.++++|||+||++..+..+...|+..|+ .+..+.++.++++.+..... ....||+||+|+.+|+.+|+++++
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~------~~~~~dlvi~D~~l~~~~g~~~~~ 80 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYA------AGRWPSIICIDINMPGINGWELID 80 (146)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHT------SSCCCSEEEEESSCSSSCHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhc------cCCCCCEEEEcCCCCCCCHHHHHH
Confidence 3468999999999999999999999998 88889999999999854110 114678999999999999999999
Q ss_pred HHHh----hcCCCCCcEEEEeCCCChhHHHHHHHhC-CCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 84 KIKE----SASLKDIPVVIMSSENIPSRINRCLEEG-AEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 84 ~l~~----~~~~~~~~iI~ls~~~~~~~~~~a~~~g-a~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
.+++ ..+ .+|+|++++..+......++..| +++|+.||++.++|..++++...+...
T Consensus 81 ~l~~~~~~~~~--~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~~ 142 (146)
T 3ilh_A 81 LFKQHFQPMKN--KSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGHH 142 (146)
T ss_dssp HHHHHCGGGTT--TCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC---
T ss_pred HHHHhhhhccC--CCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhccC
Confidence 9999 444 89999999999999999999999 999999999999999999999877543
No 57
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.89 E-value=7.3e-22 Score=138.09 Aligned_cols=121 Identities=22% Similarity=0.370 Sum_probs=110.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
+.+|||+||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+ +|+.+|+++++.+++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~-~~~~~g~~~~~~l~~ 71 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR-----------REKIDLVFVDV-FEGEESLNLIRRIRE 71 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT-----------TSCCSEEEEEC-TTTHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-----------ccCCCEEEEeC-CCCCcHHHHHHHHHH
Confidence 579999999999999999999999999999999999999994 44577999999 999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
..+ .+|||++++..+......+++.|+++|+.||++.++|..+++++..+...
T Consensus 72 ~~~--~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 72 EFP--DTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp HCT--TCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred HCC--CCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence 876 89999999999999999999999999999999999999999999877544
No 58
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.89 E-value=5.9e-22 Score=138.23 Aligned_cols=121 Identities=24% Similarity=0.428 Sum_probs=105.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|||+||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.+|+.+|+++++.+++.
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 72 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN-----------ATPPDLVLLDIMMEPMDGWETLERIKTD 72 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh-----------ccCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999984 3456799999999999999999999986
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.+...+|||++|+..+......++..|+++|+.||++.++|..+++.+..+.
T Consensus 73 ~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 73 PATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp TTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred cccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 4334789999999876655566666778999999999999999999888653
No 59
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.89 E-value=2e-21 Score=137.90 Aligned_cols=124 Identities=27% Similarity=0.311 Sum_probs=113.4
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
.++++|||+||++..+..+...|+..||.+..+.++.+++..+. ...||+||+|+.+|+.+|+++++.+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~~l~~~~g~~~~~~l 73 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK-----------GTSVQLVISDMRMPEMGGEVFLEQV 73 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT-----------TSCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-----------cCCCCEEEEecCCCCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999994 4457799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhC-CCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEG-AEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~g-a~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
++..+ .+|||++++..+......+++.| +++|+.||++.++|..+++.+..+...
T Consensus 74 ~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~ 129 (154)
T 2rjn_A 74 AKSYP--DIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFL 129 (154)
T ss_dssp HHHCT--TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCC--CCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 99876 89999999998888999999998 999999999999999999999877543
No 60
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.89 E-value=1.5e-21 Score=132.31 Aligned_cols=117 Identities=24% Similarity=0.406 Sum_probs=106.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+|+||++..+..+...|+..||.+..+.++.++++.+.. ..||++++|+.+|+.+|+++++.+++.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-----------EQPDIIILDLMLPEIDGLEVAKTIRKT 70 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------HCCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh-----------CCCCEEEEeccCCCCCHHHHHHHHHhC
Confidence 489999999999999999999899999999999999999843 356799999999999999999999974
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+ .+|+|++++..+......+++.|+++|+.||++.++|...++.+.+.
T Consensus 71 -~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 71 -S--SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp -C--CCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred -C--CCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 4 79999999999999999999999999999999999999999887653
No 61
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.89 E-value=1.2e-22 Score=164.18 Aligned_cols=119 Identities=22% Similarity=0.313 Sum_probs=111.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhc
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESA 89 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 89 (187)
+||||||++..+..+...|+..||.+..+.++.++++.+.. ..||+|++|+.||+++|+++++.+++..
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------~~~DlvllDi~mP~~dG~ell~~lr~~~ 70 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE-----------LFFPVIVLDVWMPDGDGVNFIDFIKENS 70 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------BCCSEEEEESEETTEETTTHHHHHHHHC
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 79999999999999999999999999999999999999944 4566999999999999999999999987
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
+ .+|||++|++.+.+...++++.||++|+.||++.++|..+++++.....
T Consensus 71 ~--~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 71 P--DSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp T--TCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred C--CCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 6 8999999999999999999999999999999999999999999887643
No 62
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.89 E-value=4.8e-23 Score=154.61 Aligned_cols=162 Identities=14% Similarity=0.201 Sum_probs=129.1
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++|||+||++..+..+...|+..| .+..+.++.++++.+ . .||+|++|+.+|+++|+++++.+++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~-----------~~dlvllD~~lp~~~g~~~~~~lr~~ 68 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E-----------AFHVVVLDVMLPDYSGYEICRMIKET 68 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S-----------CCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C-----------CCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 699999999999999999999888 888899999998765 2 36699999999999999999999998
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhccCCCcc--ccccccccccccchhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKEPNNI--NNKRKGLEEIDSADRT 166 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 166 (187)
.+ .+|||++|+..+......+++.|+++|+.||++.++|..+++.+.++........... .........-.....+
T Consensus 69 ~~--~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 146 (220)
T 1p2f_A 69 RP--ETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREKKGLYDFGDLKIDATGFTVFLKGKRIHL 146 (220)
T ss_dssp CT--TSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCCCSEEEETTEEEETTTTEEEETTEECCC
T ss_pred CC--CCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccccccCcccccEEEECCCCEEEECCEEEec
Confidence 76 8999999999999999999999999999999999999999999987743100000000 0000000001112348
Q ss_pred hhhcccccccCCCC----CCCccC
Q 046192 167 RTRLNDTIDINNDG----LPDLEI 186 (187)
Q Consensus 167 ~~~e~~~l~l~~~g----~~~~ei 186 (187)
+.+|.+++.++.+| +|++||
T Consensus 147 t~rE~~vl~~l~~~~~~~~s~~~I 170 (220)
T 1p2f_A 147 PKKEFEILLFLAENAGKVVTREKL 170 (220)
T ss_dssp CHHHHHHHHHHHHTTTSCEEHHHH
T ss_pred CHHHHHHHHHHHHCCCceEcHHHH
Confidence 99999999999999 888776
No 63
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.88 E-value=8.8e-23 Score=153.49 Aligned_cols=161 Identities=12% Similarity=0.170 Sum_probs=127.9
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++|||+||++..+..+...|+..||.|..+.++.++++.+. ...||+|| +|+++|+++++.+++.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~dlvi----lp~~~g~~~~~~lr~~ 65 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-----------IRNYDLVM----VSDKNALSFVSRIKEK 65 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHT-----------TSCCSEEE----ECCTTHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHh-----------cCCCCEEE----eCCCCHHHHHHHHHhC
Confidence 37999999999999999999988999999999999999994 44567999 8999999999999987
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCC-ChHHHHHHHHHHhhhh--hhhccCCCccccccccccccccchh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV-QLADVNKLKPHLMKGI--SKEIKEPNNINNKRKGLEEIDSADR 165 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~-~~~~l~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (187)
+ .++|||++|+..+......+++.||++|+.||+ +.++|..+++.+.++. ...................-.....
T Consensus 66 -~-~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (223)
T 2hqr_A 66 -H-SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGREVE 143 (223)
T ss_dssp -C-TTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCCCCSEEETTEEEETTTTEEEETTEEEC
T ss_pred -C-CCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccccCCeEEECCEEEecccCEEEECCEEEe
Confidence 3 379999999999999999999999999999999 9999999999999875 2111100000000000000111234
Q ss_pred hhhhcccccccCCCC----CCCccC
Q 046192 166 TRTRLNDTIDINNDG----LPDLEI 186 (187)
Q Consensus 166 ~~~~e~~~l~l~~~g----~~~~ei 186 (187)
++.+|.++|.++.+| +|++||
T Consensus 144 Lt~rE~~vL~~l~~~~~~~~s~~~I 168 (223)
T 2hqr_A 144 VKGKPFEVLTHLARHRDQIVSKEQL 168 (223)
T ss_dssp CCSTTTHHHHHHHHTCSEEEEHHHH
T ss_pred cCHHHHHHHHHHHhCCCCcCCHHHH
Confidence 889999999999999 888776
No 64
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.88 E-value=1.7e-21 Score=138.02 Aligned_cols=123 Identities=20% Similarity=0.320 Sum_probs=112.0
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHh-CCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKT-SSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~-~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
.++++|||+||++..+..+...|+. .||.+. .+.++.++++.+. ...||+||+|+.+++.+|+++++
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~-----------~~~~dlii~D~~l~~~~g~~~~~ 71 (153)
T 3cz5_A 3 LSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR-----------ETTPDIVVMDLTLPGPGGIEATR 71 (153)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH-----------TTCCSEEEECSCCSSSCHHHHHH
T ss_pred CcccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh-----------cCCCCEEEEecCCCCCCHHHHHH
Confidence 3458999999999999999999988 789888 7999999999994 34567999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
.+++..+ .+|||++++..+......+++.|+++|+.||++.++|..+++++..+..
T Consensus 72 ~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 72 HIRQWDG--AARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp HHHHHCT--TCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred HHHHhCC--CCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 9999876 8999999999999999999999999999999999999999999987744
No 65
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.88 E-value=2.2e-21 Score=134.77 Aligned_cols=123 Identities=24% Similarity=0.446 Sum_probs=106.7
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
....++|||+||++..+..+...|+..|+.+..+.++.++++.+. ..+ |+|++|+.+|+++|+++++.
T Consensus 4 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-----------~~~-dlvllD~~lp~~~g~~~~~~ 71 (136)
T 1dcf_A 4 NFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-----------HEH-KVVFMDVCMPGVENYQIALR 71 (136)
T ss_dssp CCTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-----------TTC-SEEEEECCSSTTTTTHHHHH
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-----------ccC-CEEEEeCCCCCCcHHHHHHH
Confidence 345689999999999999999999999999999999999998873 223 79999999999999999999
Q ss_pred HHhhcCC---CCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 85 IKESASL---KDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 85 l~~~~~~---~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+++..+. ...+||++|+..+......+++.|+++|+.||++.++|..+++++..+
T Consensus 72 l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 72 IHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp HHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred HHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 9854321 123588899998999999999999999999999999999999988765
No 66
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.88 E-value=1.1e-21 Score=136.66 Aligned_cols=122 Identities=21% Similarity=0.224 Sum_probs=110.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCC-----CCCHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-----GMTGYDLL 82 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-----~~~g~~~~ 82 (187)
+++|||+||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.++ +.+|++++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~~~~~~~~~~~~g~~~~ 71 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR-----------EENPEVVLLDMNFTSGINNGNEGLFWL 71 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHH-----------HSCEEEEEEETTTTC-----CCHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHH-----------cCCCCEEEEeCCcCCCCCCCccHHHHH
Confidence 379999999999999999999999999999999999999994 34577999999999 99999999
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
+.+++..+ .+|||++++..+......+++.|+++|+.||++.++|..+++++.++...
T Consensus 72 ~~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 129 (140)
T 2qr3_A 72 HEIKRQYR--DLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKD 129 (140)
T ss_dssp HHHHHHCT--TCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC--
T ss_pred HHHHhhCc--CCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhccc
Confidence 99999876 89999999998899999999999999999999999999999999877543
No 67
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.88 E-value=1.6e-21 Score=135.31 Aligned_cols=120 Identities=22% Similarity=0.372 Sum_probs=109.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
+.+|||+||++..+..+...|...||.+..+.++.+++..+.. ..||++++|+.+|+++|+++++.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------~~~dlvl~D~~l~~~~g~~~~~~l~~ 71 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET-----------EKPDLIVLDVMLPKLDGIEVCKQLRQ 71 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh-----------cCCCEEEEecCCCCCCHHHHHHHHHc
Confidence 3689999999999999999999999999999999999998843 35679999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
..+ .+|+|++++..+......+++.|+++|+.||++.++|...++.+..+.
T Consensus 72 ~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 72 QKL--MFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp TTC--CCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCC--CCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 765 899999999988888999999999999999999999999999888653
No 68
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.88 E-value=2.8e-22 Score=140.08 Aligned_cols=130 Identities=23% Similarity=0.426 Sum_probs=112.1
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHH
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYD 80 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~ 80 (187)
|.+ +..+.+|||+||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.+|+.+|++
T Consensus 1 M~~-~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlii~d~~l~~~~g~~ 68 (142)
T 3cg4_A 1 MSL-AEHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK-----------KGFSGVVLLDIMMPGMDGWD 68 (142)
T ss_dssp ------CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------TCCCEEEEEESCCSSSCHHH
T ss_pred CCC-CCCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHH
Confidence 443 456789999999999999999999999999999999999999994 34567999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 81 LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
+++.+++....+.+|||++++..+......+++.|+++|+.||++.++|..+++.+++..+.
T Consensus 69 ~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 69 TIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp HHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 99999983222389999999998888888999999999999999999999999999876543
No 69
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.88 E-value=1.7e-21 Score=135.69 Aligned_cols=123 Identities=15% Similarity=0.279 Sum_probs=111.7
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCC-CCCHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GMTGYDLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~ 83 (187)
..+++|||+||++..+..+...|+..||.+. .+.++.++++.+.. ..||+||+|+.+| +.+|+++++
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~-----------~~~dlii~d~~~~~~~~g~~~~~ 75 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD-----------LRPDIALVDIMLCGALDGVETAA 75 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-----------HCCSEEEEESSCCSSSCHHHHHH
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh-----------CCCCEEEEecCCCCCCCHHHHHH
Confidence 3468999999999999999999999999999 49999999999943 3467999999998 799999999
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
.+++. + .+|||++++..+......+++.|+++|+.||++.++|..+++.+.++...
T Consensus 76 ~l~~~-~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 76 RLAAG-C--NLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp HHHHH-S--CCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-C--CCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence 99987 5 89999999999999999999999999999999999999999999987554
No 70
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.88 E-value=2.3e-22 Score=140.47 Aligned_cols=126 Identities=22% Similarity=0.321 Sum_probs=103.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
+.+|||+||++..+..+...|+.. +.+..+.++.++++.+.. ..||+||+|+.+|+.+|+++++.+++
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~-----------~~~dlvi~D~~l~~~~g~~~~~~l~~ 70 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH-----------HHPDLVILDMDIIGENSPNLCLKLKR 70 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH-----------HCCSEEEEETTC------CHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc-----------CCCCEEEEeCCCCCCcHHHHHHHHHc
Confidence 379999999999999999999887 999999999999999944 45679999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhhcc
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIK 145 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~~~ 145 (187)
....+.+|||++++..+.+....+++.|+++|+.||++.++|..+++.++++......
T Consensus 71 ~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~~ 128 (140)
T 3n53_A 71 SKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSD 128 (140)
T ss_dssp STTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHHHHH
Confidence 7633489999999998888899999999999999999999999999999988765443
No 71
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.88 E-value=1.6e-21 Score=134.42 Aligned_cols=119 Identities=18% Similarity=0.348 Sum_probs=106.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTS-SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
++|||+||++..+..+...|+.. ||.+. .+.++.++++.+.. ..||++++|+.+|+++|+++++.++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~dlvllD~~l~~~~g~~~~~~l~ 71 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE-----------KRPDILLLDIIMPHLDGLAVLERIR 71 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc-----------CCCCEEEEecCCCCCCHHHHHHHHH
Confidence 68999999999999999999987 78776 68999999999843 3467999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+... +..|+|++|+..+......+++.|+++|+.||++.++|..+++++.+.
T Consensus 72 ~~~~-~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 72 AGFE-HQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp HHCS-SCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred hcCC-CCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 8521 278999999999999999999999999999999999999999988754
No 72
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.88 E-value=2.6e-21 Score=136.95 Aligned_cols=125 Identities=26% Similarity=0.364 Sum_probs=110.6
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCce--EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQ--VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~--v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
....+|||+||++..+..+...|+..|+. +..+.++.++++.+.. ..||+||+|+.+|+.+|+++++
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-----------~~~dlii~d~~l~~~~g~~~~~ 81 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA-----------HLPDVALLDYRMPGMDGAQVAA 81 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH-----------HCCSEEEEETTCSSSCHHHHHH
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHH
Confidence 45689999999999999999999988843 4469999999999944 4567999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKE 143 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~ 143 (187)
.+++..+ .+|||++++..+......+++.|+++|+.||++.++|..+++.+..+....
T Consensus 82 ~l~~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 82 AVRSYEL--PTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp HHHHTTC--SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---
T ss_pred HHHhcCC--CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeee
Confidence 9999876 899999999999999999999999999999999999999999999885543
No 73
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.88 E-value=5.1e-21 Score=132.82 Aligned_cols=129 Identities=23% Similarity=0.351 Sum_probs=111.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
+.+|||+||++..+..+...|+..|+ .+..+.++.++++.+....+. .....||+|++|+.+|+.+|+++++.+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~----~~~~~~dlvi~d~~~~~~~g~~~~~~l 77 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEY----ANASRPDLILLXLNLPKKDGREVLAEI 77 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGG----GSCCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHccccc----ccCCCCcEEEEecCCCcccHHHHHHHH
Confidence 46899999999999999999999988 888999999999998531000 001467899999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
++....+.+|||++++..+......+++.|+++|+.||++.++|..+++++.+..
T Consensus 78 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 132 (140)
T 1k68_A 78 KSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFW 132 (140)
T ss_dssp HHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHH
Confidence 9975223899999999999999999999999999999999999999999988653
No 74
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.88 E-value=3.7e-21 Score=135.05 Aligned_cols=133 Identities=26% Similarity=0.428 Sum_probs=113.9
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCccccccccc--ccccEEEEeccCCCCCHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQV--IQVNLIITDYCMPGMTGYD 80 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~ 80 (187)
.....+|||+||++..+..+...|+..|+ .+..+.++.++++.+....+.+ ... ..||+||+|+.+|+.+|++
T Consensus 3 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~---~~~~~~~~dlvi~D~~l~~~~g~~ 79 (149)
T 1k66_A 3 GNATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYC---NPDIAPRPAVILLDLNLPGTDGRE 79 (149)
T ss_dssp SCTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSS---CGGGCCCCSEEEECSCCSSSCHHH
T ss_pred CCCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhccccc---CcccCCCCcEEEEECCCCCCCHHH
Confidence 44568999999999999999999999998 8889999999999995421110 001 4688999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 81 LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+++.+++....+.+|||++++..+......+++.|+++|+.||++.++|..+++++.+..
T Consensus 80 ~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 80 VLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp HHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999875223899999999999999999999999999999999999999999988653
No 75
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.88 E-value=6e-22 Score=139.26 Aligned_cols=123 Identities=8% Similarity=0.148 Sum_probs=111.7
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCC-ceEEEeCCHHHHHHHHhccCccccccccc-ccccEEEEeccCCCCCHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSS-YQVTAVDSGNKALEFLGLLNEDEQTNSQV-IQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~-~~v~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
....+|||+||++..+..+...|+..| |.+..+.++.+++..+.. . ..||+||+|+.+|+++|+++++
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~----------~~~~~dlvi~D~~l~~~~g~~~~~ 87 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTD----------GLDAFDILMIDGAALDTAELAAIE 87 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHH----------HHTTCSEEEEECTTCCHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHh----------cCCCCCEEEEeCCCCCccHHHHHH
Confidence 446899999999999999999999988 999999999988877632 2 4577999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.+++..+ .+|||++++..+......+++.|+++|+.||++.++|..++++++.+.
T Consensus 88 ~l~~~~~--~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 88 KLSRLHP--GLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp HHHHHCT--TCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHHhCC--CCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 9999876 899999999999999999999999999999999999999999998763
No 76
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.88 E-value=3e-21 Score=136.58 Aligned_cols=122 Identities=23% Similarity=0.359 Sum_probs=111.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
+.+|||+||++..+..+...|+. ||.+..+.++.++++.+.... +||+||+|+.+|+.+|+++++.+++
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~----------~~dlvi~D~~l~~~~g~~~~~~l~~ 72 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD----------PFSVIMVDMRMPGMEGTEVIQKARL 72 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC----------CCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC----------CCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 47999999999999999999975 899999999999999995332 3579999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhC-CCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEG-AEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~g-a~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
..+ .+|||++++..+......++..| +++|+.||++.++|..+++.++++...
T Consensus 73 ~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 73 ISP--NSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDL 126 (151)
T ss_dssp HCS--SCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred cCC--CcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 876 89999999999999999999999 999999999999999999999987543
No 77
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.88 E-value=2.6e-21 Score=131.36 Aligned_cols=117 Identities=21% Similarity=0.382 Sum_probs=106.5
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++|+|+||++..+..+...|+..||.+..+.++.+++..+.. ..||++++|+.+|+++|+++++.+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------~~~dlvi~D~~l~~~~g~~~~~~l~~- 69 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-----------RKPDLIILDLGLPDGDGIEFIRDLRQ- 69 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESEETTEEHHHHHHHHHT-
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc-----------CCCCEEEEeCCCCCCcHHHHHHHHHh-
Confidence 589999999999999999999889999999999999988843 34679999999999999999999995
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+ .+|+|++++..+......+++.|+++|+.||++.++|..+++.+.++
T Consensus 70 ~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 70 WS--AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp TC--CCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CC--CCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 44 89999999999999999999999999999999999999999888765
No 78
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.87 E-value=4.3e-22 Score=136.48 Aligned_cols=120 Identities=22% Similarity=0.389 Sum_probs=108.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+|+||++..+..+...|+..||.+..+.++.++++.+ ....||++++|+.+|+.+|+++++.+++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 71 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-----------NEPWPDLILLAWMLPGGSGIQFIKHLRRE 71 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTC-----------SSSCCSEEEEESEETTEEHHHHHHHHHTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHH-----------hccCCCEEEEecCCCCCCHHHHHHHHHhC
Confidence 5899999999999999999998999999999999999887 33457799999999999999999999986
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
...+++|+|++|+..+......+++.|+++|+.||++.++|...++.+.++
T Consensus 72 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 72 SMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp TTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 533489999999998888899999999999999999999999999888764
No 79
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.87 E-value=2.4e-21 Score=135.51 Aligned_cols=133 Identities=23% Similarity=0.385 Sum_probs=109.2
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
|.|| .++++|||+||++..+..+...|+..|+ .+..+.++.++++.+...... ....||+||+|+.+|+.+|
T Consensus 1 M~~m-~~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~-----~~~~~dlii~D~~l~~~~g 74 (143)
T 2qvg_A 1 MSLA-ADKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKE-----NKIHPKLILLDINIPKMNG 74 (143)
T ss_dssp -------CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTC-----CCCCCSEEEEETTCTTSCH
T ss_pred CCcc-cCCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccc-----cCCCCCEEEEecCCCCCCH
Confidence 5553 4567999999999999999999998887 899999999999998531110 1245789999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+++++.+++....+.+|+|++++..+......+++.|+++|+.||++.++|..++.....+
T Consensus 75 ~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 75 IEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp HHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 9999999987522389999999999999999999999999999999999999887655443
No 80
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.87 E-value=1.9e-21 Score=131.33 Aligned_cols=114 Identities=21% Similarity=0.394 Sum_probs=102.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+|+||++..+..+...|+..||.+..+.++.++++.+.. ..||++++|+.+|+.+|+++++.+++.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS-----------GNYDLVILDIEMPGISGLEVAGEIRKK 70 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------SCCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------CCCCEEEEECCCCCCCHHHHHHHHHcc
Confidence 489999999999999999999999999999999999999843 456799999999999999999999998
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.+ .+|+|++++..+.. ..+++.|+++|+.||++.++|..+++++.
T Consensus 71 ~~--~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 71 KK--DAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CT--TCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred CC--CCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 75 89999999876554 67889999999999999999999888764
No 81
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.87 E-value=4.1e-21 Score=143.27 Aligned_cols=130 Identities=24% Similarity=0.379 Sum_probs=106.5
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCc-eEEEeCCHHHHHHHHhccCccc--ccccccccccEEEEeccCCCCCHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSY-QVTAVDSGNKALEFLGLLNEDE--QTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~--~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
...+||||||++..+..+..+|+..|| .|..+.++.++++.+....... ........||+||+|+.||+++|+++++
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~ 139 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATR 139 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 457999999999999999999999998 8999999999999985420000 0000012578999999999999999999
Q ss_pred HHHhh----cCCCCCcEEEEeCCC-ChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 84 KIKES----ASLKDIPVVIMSSEN-IPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 84 ~l~~~----~~~~~~~iI~ls~~~-~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.|++. .+ .+|||++|+.. +.+....+++.|+++||.||++ +|..++++++.+.
T Consensus 140 ~lr~~~~~~~~--~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 140 EIRKVEKSYGV--RTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp HHHHHHHTTTC--CCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC---
T ss_pred HHHhhhhhcCC--CCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhh
Confidence 99986 34 89999999987 7788999999999999999998 8999998888664
No 82
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.87 E-value=2.3e-21 Score=135.84 Aligned_cols=120 Identities=21% Similarity=0.299 Sum_probs=102.2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHh--CCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKT--SSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~--~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
++|||+||++..+..+...|.. .||.+. .+.++.++++.+. ...||+|++|+.+|+++|+++++.+
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~-----------~~~~dlvllD~~lp~~~g~~l~~~l 71 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL-----------KHPPNVLLTDVRMPRMDGIELVDNI 71 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT-----------TSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 5899999999999999999963 578777 7999999999983 3457799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
++..+ .+|||++|+..+......+++.|+++|+.||++.++|..+++.+.....
T Consensus 72 ~~~~~--~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 72 LKLYP--DCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp HHHCT--TCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred HhhCC--CCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 98766 8999999999888889999999999999999999999999999887654
No 83
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.87 E-value=1.5e-21 Score=158.74 Aligned_cols=122 Identities=25% Similarity=0.477 Sum_probs=106.9
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
.+.+.+||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.
T Consensus 2 ~~~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-----------~~~dlvllD~~mp~~~G~~~~~~ 70 (394)
T 3eq2_A 2 HKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES-----------EQPDLVICDLRMPQIDGLELIRR 70 (394)
T ss_dssp --CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH-----------SCCSEEEECCCSSSSCTHHHHHH
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh-----------CCCCEEEEcCCCCCCCHHHHHHH
Confidence 4456899999999999999999999999999999999999999943 45679999999999999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCC-ChHHHHHHHHHHhhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV-QLADVNKLKPHLMKG 139 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~-~~~~l~~~i~~~~~~ 139 (187)
+++..+ ++|||++|+..+.+...++++.||++|+.||+ +.++|..+++++...
T Consensus 71 lr~~~~--~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~ 124 (394)
T 3eq2_A 71 IRQTAS--ETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDR 124 (394)
T ss_dssp HHHTTC--CCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHH
T ss_pred HHhhCC--CCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhh
Confidence 999876 89999999999999999999999999999999 588888888777754
No 84
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.87 E-value=6.5e-21 Score=135.33 Aligned_cols=122 Identities=24% Similarity=0.368 Sum_probs=111.3
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
+..+|||+||++..+..+...|...||.+..+.++.+++..+ ....||+||+|+.+|+.+|+++++.++
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dliild~~l~~~~g~~~~~~l~ 70 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL-----------SADFAGIVISDIRMPGMDGLALFRKIL 70 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTC-----------CTTCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 357999999999999999999999999999999999999988 344577999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
+..+ .+|||++++..+......+++.|+++|+.||++.++|..+++.+..+..
T Consensus 71 ~~~~--~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 71 ALDP--DLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp HHCT--TSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred hhCC--CCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9876 8999999999889999999999999999999999999999999987654
No 85
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.87 E-value=3.8e-21 Score=147.88 Aligned_cols=122 Identities=27% Similarity=0.537 Sum_probs=112.2
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
..++|||+||++..+..+...|+..||.|..+.++.++++.+. ...||+|++|+.||+++|+++++.|+
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-----------~~~~dlvl~D~~mp~~~G~~l~~~ir 196 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS-----------KNHIDIVLSDVNMPNMDGYRLTQRIR 196 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHH-----------HSCCSEEEEEESSCSSCCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-----------hCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 3578999999999999999999999999999999999999994 34577999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
+..+ .+|||++|+..+......+++.|+++|+.||++.++|..+++++.....
T Consensus 197 ~~~~--~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 197 QLGL--TLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp HHHC--CSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred hcCC--CCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 9876 8999999999999999999999999999999999999999998876543
No 86
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.87 E-value=3.5e-21 Score=136.47 Aligned_cols=123 Identities=27% Similarity=0.288 Sum_probs=100.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-Cc-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTS-SY-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~-~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
+++|||+||++..+..+...|+.. |+ .+..+.++.++++.+.. ...||+||+|+.+|+.+|+++++.+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~----------~~~~dlvi~d~~l~~~~g~~~~~~l 72 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEA----------DNTVDLILLDVNLPDAEAIDGLVRL 72 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHT----------TCCCSEEEECC------CHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhc----------cCCCCEEEEeCCCCCCchHHHHHHH
Confidence 379999999999999999999887 77 67789999999999943 1457799999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
++..+ .+|||++++..+......+++.|+++|+.||++.++|..+++.+..+...
T Consensus 73 ~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~ 127 (154)
T 2qsj_A 73 KRFDP--SNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIF 127 (154)
T ss_dssp HHHCT--TSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCB
T ss_pred HHhCC--CCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEE
Confidence 99876 89999999998889999999999999999999999999999999987544
No 87
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.87 E-value=7.7e-21 Score=132.98 Aligned_cols=127 Identities=22% Similarity=0.375 Sum_probs=104.2
Q ss_pred CCCC-CCCceEEEEEeCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC
Q 046192 1 MGMV-TDSQFHVLAVDDSIIDRKLIERLLKTS-SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT 77 (187)
Q Consensus 1 m~~~-~~~~~~ilivd~~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~ 77 (187)
|+|+ ....++|||+||++..+..+...|+.. ++.++ .+.++.++++.+.. ..||+||+|+.+|+.+
T Consensus 1 M~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-----------~~~dlvi~d~~l~~~~ 69 (143)
T 2qv0_A 1 MSLVMSGEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH-----------NKVDAIFLDINIPSLD 69 (143)
T ss_dssp ---------CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH-----------CCCSEEEECSSCSSSC
T ss_pred CccccCCCceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-----------CCCCEEEEecCCCCCC
Confidence 4443 344689999999999999999999876 78754 68999999999843 4567999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
|+++++.+++..+ ..|||++++.. +....+++.|+++|+.||++.++|..+++++.....+
T Consensus 70 g~~~~~~l~~~~~--~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 70 GVLLAQNISQFAH--KPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ 130 (143)
T ss_dssp HHHHHHHHTTSTT--CCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCC--CceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999998654 77889898863 4678899999999999999999999999999877543
No 88
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.87 E-value=9.9e-21 Score=130.46 Aligned_cols=123 Identities=23% Similarity=0.282 Sum_probs=108.1
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CCHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MTGYDLLRK 84 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~ 84 (187)
+++++|||+||++..+..+...|+..||.+..+.++.++++.+... ..||+||+|+.+|+ .+|+++++.
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~----------~~~dlvi~d~~l~~~~~g~~~~~~ 72 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG----------AAIDGVVTDIRFCQPPDGWQVARV 72 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT----------CCCCEEEEESCCSSSSCHHHHHHH
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC----------CCCCEEEEeeeCCCCCCHHHHHHH
Confidence 3458999999999999999999999999999999999999998432 15679999999997 999999999
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
+++..+ .+|+|++++..+......++..| +|+.||++.++|..+++++..+...
T Consensus 73 l~~~~~--~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 73 AREIDP--NMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp HHHHCT--TCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred HHhcCC--CCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 999876 89999999998888887777665 7999999999999999999877544
No 89
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.86 E-value=1.6e-21 Score=134.90 Aligned_cols=121 Identities=19% Similarity=0.263 Sum_probs=107.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
+.+|||+||++..+..+...|+..++.+..+.++.+++..+ ... ||+||+|+.+|+.+|+++++.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~-~dlvi~D~~l~~~~g~~~~~~l~~ 70 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLS-----------LNK-QDIIILDLMMPDMDGIEVIRHLAE 70 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSC-----------CCT-TEEEEEECCTTTTHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhh-----------ccC-CCEEEEeCCCCCCCHHHHHHHHHh
Confidence 47999999999999999999988888899999999998777 334 779999999999999999999999
Q ss_pred hcCCCCCcEEEEeCCCCh-----hHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhh
Q 046192 88 SASLKDIPVVIMSSENIP-----SRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISK 142 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~-----~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~ 142 (187)
..+ .+|||++++..+. .....+++.|+++|+.||++.++|..+++++..+...
T Consensus 71 ~~~--~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 71 HKS--PASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp TTC--CCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred CCC--CCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 876 8999999998764 6677789999999999999999999999999987543
No 90
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.86 E-value=6.4e-22 Score=154.87 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=106.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCC-CCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l 85 (187)
..+||++||++..+..+..+|+..||.|. .+.+|.+|++.+. ..+||+||+|+.|| +++|+++++.|
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~-----------~~~~dlvl~D~~MPd~mdG~e~~~~i 228 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVT-----------RRTPGLVLADIQLADGSSGIDAVKDI 228 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------HCCCSEEEEESCCTTSCCTTTTTHHH
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHH-----------hCCCCEEEEcCCCCCCCCHHHHHHHH
Confidence 46899999999999999999999999999 8999999999994 44567999999999 79999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
|+.. ++|||++|+.. +...++++.|+++||.||++.++|..+++.++...
T Consensus 229 r~~~---~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 229 LGRM---DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp HHHT---TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred HhcC---CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 9975 89999999974 45677899999999999999999999999998763
No 91
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.86 E-value=2.1e-20 Score=130.30 Aligned_cols=118 Identities=21% Similarity=0.319 Sum_probs=105.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|||+||++..+..+...|+.. |.+..+.++.++++.+. ...||++++|+.+|+++|+++++.+++.
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~lp~~~g~~~~~~l~~~ 69 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILE-----------EEWVQVIICDQRMPGRTGVDFLTEVRER 69 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHH-----------HSCEEEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 47999999999999999999865 88989999999999984 3456799999999999999999999988
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHh-CCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEE-GAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~-ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.+ .+|+|++++..+......++.. |+++|+.||++.++|..+++.+..+.
T Consensus 70 ~~--~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 70 WP--ETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp CT--TSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CC--CCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 66 8899999999888888888876 59999999999999999999888664
No 92
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.86 E-value=6.9e-21 Score=141.42 Aligned_cols=120 Identities=22% Similarity=0.388 Sum_probs=109.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
..+||||||++..+..+...|...||.+. .+.++.++++.+.. ..||+||+|+.+|+++|+++++.++
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~-----------~~~dlvi~D~~~p~~~g~~~~~~l~ 81 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL-----------HKPDLVIMDVKMPRRDGIDAASEIA 81 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----------HCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh-----------cCCCEEEEeCCCCCCChHHHHHHHH
Confidence 36999999999999999999999999988 79999999999843 3467999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGIS 141 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~ 141 (187)
+..+ .|||++|+..+......+++.|+++|+.||++.++|..+++.+..+..
T Consensus 82 ~~~~---~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 82 SKRI---APIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp HTTC---SCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred hcCC---CCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 8753 499999999999999999999999999999999999999999887653
No 93
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.85 E-value=1.1e-20 Score=128.94 Aligned_cols=118 Identities=21% Similarity=0.340 Sum_probs=106.6
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCC-CCCHHHHHHHHHh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GMTGYDLLRKIKE 87 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l~~ 87 (187)
.+|||+||++..+..+...|+..||.+..+.++.++++.+.. ..||++++|+.+| +.+|+++++.+++
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------~~~dlvi~d~~~~~~~~g~~~~~~l~~ 74 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR-----------DRPDLVVLAVDLSAGQNGYLICGKLKK 74 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH-----------HCCSEEEEESBCGGGCBHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCCHHHHHHHHhc
Confidence 699999999999999999999999999999999999999843 3467999999999 9999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
....+++|+|++ +..+......+++.|+++|+.||++.++|...++++.+
T Consensus 75 ~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 75 DDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp STTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 732238999999 88888889999999999999999999999999988775
No 94
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.85 E-value=2.6e-20 Score=154.08 Aligned_cols=121 Identities=28% Similarity=0.424 Sum_probs=110.1
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|++.
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~-----------~~~dlvllD~~mp~~~G~~~~~~l~~~ 70 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR-----------DLPDIILLDVMMPGMDGFTVCRKLKDD 70 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------HCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-----------CCCCEEEEcCCCCCCCHHHHHHHHhcC
Confidence 489999999999999999999889999999999999999843 346699999999999999999999986
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
...+++|||++|+..+......+++.||++|+.||++.++|..+++.+.++.
T Consensus 71 ~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 71 PTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp TTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4334899999999999999999999999999999999999999998887653
No 95
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.85 E-value=2.2e-20 Score=151.88 Aligned_cols=119 Identities=22% Similarity=0.439 Sum_probs=110.0
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++||||||++..+..+...|+..||.|..+.++.++++.+. ...||+||+|+.||+++|+++++.+++.
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-----------~~~~DlvllD~~mp~~dG~ell~~lr~~ 69 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS-----------EKHFNVVLLDLLLPDVNGLEILKWIKER 69 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH-----------HSCCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 37999999999999999999988999999999999999994 3456799999999999999999999998
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.+ ++|||++|+..+.+....+++.||++|+.||++.++|..+++++....
T Consensus 70 ~~--~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 70 SP--ETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp CT--TSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CC--CCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 76 899999999999999999999999999999999999999998887653
No 96
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.84 E-value=7.3e-20 Score=131.46 Aligned_cols=122 Identities=25% Similarity=0.342 Sum_probs=100.4
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhCC-ceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHH
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSS-YQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDL 81 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~~-~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 81 (187)
|+.++++|||+||++..+..+...|+..+ +.++ .+.++.++++.+.. ..||+||+|+.+|+.+|+++
T Consensus 21 M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-----------~~~dlvilD~~l~~~~g~~l 89 (164)
T 3t8y_A 21 MTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE-----------LKPDVITMDIEMPNLNGIEA 89 (164)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-----------HCCSEEEECSSCSSSCHHHH
T ss_pred cccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc-----------CCCCEEEEeCCCCCCCHHHH
Confidence 34567899999999999999999999874 4444 68999999999944 34669999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEeCCCChh--HHHHHHHhCCCceeeCCCC---------hHHHHHHHHHHhhh
Q 046192 82 LRKIKESASLKDIPVVIMSSENIPS--RINRCLEEGAEEFFLKPVQ---------LADVNKLKPHLMKG 139 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~ls~~~~~~--~~~~a~~~ga~~yl~kP~~---------~~~l~~~i~~~~~~ 139 (187)
++.+++.. .+|+|++++..+.. ....+++.|+++|+.||++ .+++..+++.+...
T Consensus 90 ~~~lr~~~---~~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 90 LKLIMKKA---PTRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp HHHHHHHS---CCEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred HHHHHhcC---CceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 99999876 37999999876654 6779999999999999999 56666666666654
No 97
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.84 E-value=3.9e-20 Score=129.84 Aligned_cols=113 Identities=29% Similarity=0.419 Sum_probs=94.1
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTS-SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
.++.+|||+||++..+..+...|+.. ||.++ .+.++.++++.+... ..||+||+|+.+|+++|+++++
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~----------~~~dlvilD~~l~~~~g~~~~~ 80 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQ----------PNVDLILLDIEMPVMDGMEFLR 80 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHC----------TTCCEEEECTTSCCCTTCHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcC----------CCCCEEEEeCCCCCCCHHHHHH
Confidence 45689999999999999999999987 88865 799999999998432 1577999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEeC--CCChhHHHHHHHhCCCceeeCCCChHHHHH
Q 046192 84 KIKESASLKDIPVVIMSS--ENIPSRINRCLEEGAEEFFLKPVQLADVNK 131 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~--~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~ 131 (187)
.+++.. ..|+++++. ..+......+++.|+++|+.||++.++|..
T Consensus 81 ~lr~~~---~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~ 127 (145)
T 3kyj_B 81 HAKLKT---RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDL 127 (145)
T ss_dssp HHHHHC---CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC----
T ss_pred HHHhcC---CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 999875 478888887 556777889999999999999999655443
No 98
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.84 E-value=4.1e-20 Score=129.02 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=100.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
.++|||+||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.+|+.+|+++++.+++
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~-----------~~~dlvllD~~lp~~~g~~~~~~l~~ 78 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-----------RQFDVIIMDIQMPVMDGLEAVSEIRN 78 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH-----------SCCSEEEECTTCCSSCHHHHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc-----------CCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 3689999999999999999999889999999999999999843 35679999999999999999999997
Q ss_pred hc---CCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhhhhh
Q 046192 88 SA---SLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKE 143 (187)
Q Consensus 88 ~~---~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~~~~ 143 (187)
.. ..+.+|++++++........ ..|+++|+.||++.++|..+++.+..+....
T Consensus 79 ~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~~~ 134 (140)
T 3c97_A 79 YERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGAEG 134 (140)
T ss_dssp HHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-----
T ss_pred hhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCCCC
Confidence 42 11378999998865544332 6899999999999999999999998775443
No 99
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.84 E-value=8.2e-20 Score=122.87 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=103.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+|+|+++..+..+...|+..||.+..+.++.+++..+.. ..||++++|..+++.+|.++++.+++.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~-----------~~~dlii~d~~~~~~~~~~~~~~l~~~ 70 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL-----------LQPIVILMAWPPPDQSCLLLLQHLREH 70 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-----------HCCSEEEEECSTTCCTHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh-----------cCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999843 356799999999999999999999997
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
...+.+|+|++++..+.. .+++.|+++|+.||++.++|...++++..
T Consensus 71 ~~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 71 QADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp CCCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred cccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 633489999999987766 89999999999999999999998887664
No 100
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.83 E-value=8.5e-21 Score=154.83 Aligned_cols=121 Identities=22% Similarity=0.262 Sum_probs=105.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHh-CCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKT-SSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~-~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
+++||||||++..+..+...|+. .++.|..+.++.+|++.+... ..||+|++|+.||+++|+++++.++
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~----------~~~DlvllDi~mP~~dG~ell~~l~ 72 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC----------GHVDIAICDLQMSGMDGLAFLRHAS 72 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH----------SCEEEEEECSSCSSSCHHHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC----------CCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 37999999999999999999988 578888999999999998431 2577999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCCh-----hHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 87 ESASLKDIPVVIMSSENIP-----SRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~-----~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
+..+ ..|||++|+..+. ....+++..|+++|+.||++.++|..+++++....
T Consensus 73 ~~~~--~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 73 LSGK--VHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp HHTC--EEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred hcCC--CceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 8875 6778777777665 56778899999999999999999999999888654
No 101
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.83 E-value=5.9e-22 Score=135.00 Aligned_cols=119 Identities=27% Similarity=0.427 Sum_probs=108.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+|+|+||++..+..+...|+..|+.+..+.++.++++.+. ...||++++|+.+|+.+|+++++.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvi~d~~~~~~~g~~~~~~l~~ 71 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-----------SKTPDVLLSDIRMPGMDGLALLKQIKQ 71 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSS-----------SCCCSCEEECSCSSHHHHCSTHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-----------cCCCCEEEEeeecCCCCHHHHHHHHHh
Confidence 368999999999999999999988999999999999999883 345779999999999999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
..+ .+|+|++++..+......+++.|+++|+.||++.++|...++++.++
T Consensus 72 ~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 72 RHP--MLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp HCT--TSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred hCC--CCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 766 89999999998888889999999999999999999999999888764
No 102
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.83 E-value=5.3e-19 Score=122.79 Aligned_cols=118 Identities=15% Similarity=0.267 Sum_probs=105.2
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
....+|||+||++..+..+...|+..||.+..+.++.+++..+.. ..||+|| +|+.+|+++++.+
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------~~~dlvi----~~~~~g~~~~~~l 80 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI-----------RNYDLVM----VSDKNALSFVSRI 80 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-----------SCCSEEE----ECSTTHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc-----------CCCCEEE----EcCccHHHHHHHH
Confidence 346899999999999999999999999999999999999999943 4566999 8899999999999
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCC-ChHHHHHHHHHHhhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV-QLADVNKLKPHLMKGI 140 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~-~~~~l~~~i~~~~~~~ 140 (187)
++. + ..+|||++++..+......+++.|+++|+.||+ +.++|..+++.+..+.
T Consensus 81 ~~~-~-~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 81 KEK-H-SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp HHH-S-TTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred Hhc-C-CCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 987 2 278999999999999999999999999999999 9999999999888653
No 103
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.82 E-value=9.2e-20 Score=146.05 Aligned_cols=119 Identities=21% Similarity=0.379 Sum_probs=106.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHh-CCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKT-SSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~-~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
..+||||||++..+..+...|.. .||.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.++
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~-----------~~~dlvl~D~~mp~~~G~~~~~~l~ 86 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ-----------IKPTVILQDLVMPGVDGLTLLAAYR 86 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH-----------HCCSEEEEESBCSSSBHHHHHHHHT
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh-----------CCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 46899999999999999999964 58999899999999999944 3466999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
+....+.+|||++|+..+......+++.|+++|+.||++.++|..+++...
T Consensus 87 ~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~ 137 (358)
T 3bre_A 87 GNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHS 137 (358)
T ss_dssp TSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHH
T ss_pred cCcccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHH
Confidence 864334899999999999999999999999999999999999988887664
No 104
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.81 E-value=1.8e-19 Score=125.29 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=101.7
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
.+..+|||+||++..+..+...|+..||.+..+.++.++++.+.. ...||++++|+.+|+.+|+++++.+
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~----------~~~~dlvilD~~l~~~~g~~~~~~l 82 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQ----------LSTCDLLIVSDQLVDLSIFSLLDIV 82 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGG----------GGSCSEEEEETTCTTSCHHHHHHHH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHh----------CCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 346899999999999999999999999999999999999998843 0456799999999999999999999
Q ss_pred HhhcCCCCCcEEEEe-CCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 86 KESASLKDIPVVIMS-SENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls-~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
++..+ .+|+|+++ +..+... ..++ +++|+.||++.++|...++++..+
T Consensus 83 ~~~~~--~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 83 KEQTK--QPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp TTSSS--CCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred HhhCC--CCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 98665 89999999 8766666 6666 999999999999999999888765
No 105
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.80 E-value=4e-19 Score=130.95 Aligned_cols=116 Identities=10% Similarity=0.082 Sum_probs=101.9
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
..++||||||++..+..+...|...||.+..+.++.+++ ...||+||+|+.||+++|. +++.++
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al---------------~~~~dlvl~D~~mp~~~g~-l~~~~~ 74 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF---------------DVPVDVVFTSIFQNRHHDE-IAALLA 74 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC---------------SSCCSEEEEECCSSTHHHH-HHHHHH
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC---------------CCCCCEEEEeCCCCccchH-HHHHHh
Confidence 357999999999999999999998899998877766543 1247799999999999998 888888
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
...+ .+|||++|+..+.+....+++.|+++|+.||++.++|...++.+..+.
T Consensus 75 ~~~~--~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 75 AGTP--RTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp HSCT--TCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred ccCC--CCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 7644 899999999999999999999999999999999999999998887664
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.75 E-value=3.4e-17 Score=131.36 Aligned_cols=118 Identities=25% Similarity=0.365 Sum_probs=101.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-Cce-EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTS-SYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~-~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
+++||||||++..+..+...|+.. +|. +..+.++.++++.+... .||+|++|+.||+++|+++++.|
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~-----------~pDlVllDi~mp~~dGlell~~l 71 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKF-----------NPDVLTLDVEMPRMDGLDFLEKL 71 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-----------CCSEEEEECCCSSSCHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhcc-----------CCCEEEEECCCCCCCHHHHHHHH
Confidence 389999999999999999999986 888 45799999999999543 46699999999999999999999
Q ss_pred HhhcCCCCCcEEEEeCCCCh--hHHHHHHHhCCCceeeCCCCh---------HHHHHHHHHHhhh
Q 046192 86 KESASLKDIPVVIMSSENIP--SRINRCLEEGAEEFFLKPVQL---------ADVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~--~~~~~a~~~ga~~yl~kP~~~---------~~l~~~i~~~~~~ 139 (187)
++.. .+|||++|+..+. +...++++.|+++|+.||++. ++|...++.+.+.
T Consensus 72 ~~~~---p~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 72 MRLR---PMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp HHSS---CCCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred HhcC---CCcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 9865 3899999988665 458899999999999999984 7777887777654
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.75 E-value=4.6e-18 Score=131.08 Aligned_cols=103 Identities=17% Similarity=0.318 Sum_probs=85.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-CceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTS-SYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~-~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
+.+||||||++..+..+...|... |+.+..+ ++.+++..+ ....||+|++|+.||+++|+++++.++
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~-----------~~~~~dlvllD~~mP~~~G~~~~~~lr 71 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHC-----------QGDEYVVALVDLTLPDAPSGEAVKVLL 71 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTC-----------CTTTEEEEEEESCBTTBTTSHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHh-----------hcCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 368999999999999999999764 7777555 444444444 234688999999999999999999999
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCCh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQL 126 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~ 126 (187)
+. ++|||++|+..+.+....+++.||++|+.||...
T Consensus 72 ~~----~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 72 ER----GLPVVILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp HT----TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred hC----CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 73 6899999999999999999999999999999643
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.73 E-value=1.3e-17 Score=145.71 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=106.2
Q ss_pred EEEEEeCCH-HH-------HHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC----CC
Q 046192 10 HVLAVDDSI-ID-------RKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG----MT 77 (187)
Q Consensus 10 ~ilivd~~~-~~-------~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~----~~ 77 (187)
+||||||++ .. +..|...|+..||.|..+.++.+++..+... ..+|+||+|+.||+ ++
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~----------~~~d~vilDi~lp~~~~~~~ 71 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN----------EAIDCLMFSYQMEHPDEHQN 71 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT----------CCCSEEEEECCCCSHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC----------CCCcEEEEeCCCCccccccc
Confidence 899999999 88 9999999999999999999999999999432 23779999999999 99
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCC-hhHHHHHHHhCCCceeeCCCChHH-HHHHHHHHhhhh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENI-PSRINRCLEEGAEEFFLKPVQLAD-VNKLKPHLMKGI 140 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~-~~~~~~a~~~ga~~yl~kP~~~~~-l~~~i~~~~~~~ 140 (187)
|+++++.||+.++ ++||+++|+.++ .+.....+..||+||+.||++..+ |...++.+++..
T Consensus 72 G~~ll~~iR~~~~--~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 72 VRQLIGKLHERQQ--NVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHHHHHHHHHST--TCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999876 899999999876 677888899999999999999999 777777777653
No 109
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.24 E-value=1.2e-11 Score=92.97 Aligned_cols=94 Identities=17% Similarity=0.336 Sum_probs=76.9
Q ss_pred ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHH
Q 046192 33 YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCL 112 (187)
Q Consensus 33 ~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~ 112 (187)
+.|..+.++.++++.+.. ..||++++|+.||+++|+++++.+++..+ ..++++++.....+....++
T Consensus 6 ~~v~~~~~~~~a~~~~~~-----------~~~dlvl~D~~~p~~~g~~~~~~l~~~~~--~~~i~vi~~~~~~~~~~~~~ 72 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKE-----------LKPDIVTMDITMPEMNGIDAIKEIMKIDP--NAKIIVCSAMGQQAMVIEAI 72 (237)
T ss_dssp EEEECCCSSSTTHHHHHH-----------HCCSCEEEECCSTTSSHHHHHHHHHHHSS--SCCEEEECCSSTHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHh-----------cCCCEEEEeCCCCCCCHHHHHHHHHHhCC--CCCEEEEECCCCHHHHHHHH
Confidence 445558889999998843 34669999999999999999999998766 56666666666688999999
Q ss_pred HhCCCceeeCC--CChHHHHHHHHHHhhh
Q 046192 113 EEGAEEFFLKP--VQLADVNKLKPHLMKG 139 (187)
Q Consensus 113 ~~ga~~yl~kP--~~~~~l~~~i~~~~~~ 139 (187)
+.|+++|+.|| ++..++...+.+....
T Consensus 73 ~~Ga~~~l~kp~~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 73 KAGAKDFIVNTAAVENPSLITQIAQTFGS 101 (237)
T ss_dssp HTTCCEEEESHHHHHCTHHHHHHHHHHTG
T ss_pred HCCHHheEeCCcccChHHHHHHHHHHhCC
Confidence 99999999999 7777888777766644
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.21 E-value=6.9e-10 Score=91.48 Aligned_cols=120 Identities=17% Similarity=0.237 Sum_probs=99.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+|++++|+...+..+...|.. .+.+....++.++. .. ....||++++|..||+++|+++++.++.
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~-~~-----------~~~~~dlil~D~~mp~~dG~~~~~~ir~ 218 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAK-IS-----------AGGPVDLVIVNAAAKNFDGLRFTAALRS 218 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHH-HH-----------HHSSCSEEEEETTCSSSCHHHHHHHHHT
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHh-hh-----------ccCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 46899999999988888888864 35566677777775 22 1234779999999999999999999998
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
.......|++++++..+......++..|+++|+.||++..++...+..+....
T Consensus 219 ~~~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 219 EERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp SGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CccccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 76556899999999999999999999999999999999999988777766543
No 111
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.76 E-value=4.6e-05 Score=66.15 Aligned_cols=105 Identities=11% Similarity=0.121 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 046192 20 DRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIM 99 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~l 99 (187)
....|...|++.||.|..+.+.++++..+.. +..+++||+|++++ +.++++.||+.++ ++||.++
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~----------~~~i~avIld~d~~---~~~ll~~Ir~~~~--~iPVFl~ 82 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIEN----------NARLCGVIFDWDKY---NLELCEEISKMNE--NLPLYAF 82 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHH----------CTTEEEEEEEHHHH---HHHHHHHHHHHCT--TCEEEEE
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh----------CCCceEEEEecccc---HHHHHHHHHHhCC--CCCEEEE
Confidence 3456778888899999999999999999942 23488999999875 6889999999987 9999999
Q ss_pred eCCCChhHHHHHHHhCCCceeeCCCChHHH-HHHHHHHhhh
Q 046192 100 SSENIPSRINRCLEEGAEEFFLKPVQLADV-NKLKPHLMKG 139 (187)
Q Consensus 100 s~~~~~~~~~~a~~~ga~~yl~kP~~~~~l-~~~i~~~~~~ 139 (187)
++......+....-.++++|+.+..+..++ ...+.+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (715)
T 3n75_A 83 ANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQTTDE 123 (715)
T ss_dssp CCTTCCCCGGGTTSCCEEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred ecCCcccccchhhhhccCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 987543332221234678889887765554 4444444433
No 112
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=97.69 E-value=5.8e-05 Score=48.50 Aligned_cols=107 Identities=17% Similarity=0.200 Sum_probs=80.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
+..||+|..|-...-.+++++....|.++..+... .....|+|++++.+-..+ +..
T Consensus 12 ~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~-----------------~e~~AdlIfCEYlLLPe~-------ifS 67 (121)
T 3q7r_A 12 PKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK-----------------QELSADLVVCEYSLLPRE-------IRS 67 (121)
T ss_dssp CEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC-----------------CCTTEEEEEEEGGGSCTT-------CCC
T ss_pred CcEEEEEecCchhhHHHHHhcCCcceeEEeccccC-----------------CcccceeEEEeeecChHH-------hcC
Confidence 46789999998888889999977779888754321 333567999999653211 112
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.......-+|++-+.-+++...+.++.||. |+.+|+.+.-+..+++..++.
T Consensus 68 ~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 68 PKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp CTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 222236678888888899999999999999 999999999888888887764
No 113
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=97.50 E-value=0.0074 Score=42.59 Aligned_cols=121 Identities=19% Similarity=0.240 Sum_probs=85.1
Q ss_pred CceEEEEE----eCCHHHHHHHHHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C-C
Q 046192 7 SQFHVLAV----DDSIIDRKLIERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M-T 77 (187)
Q Consensus 7 ~~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~-~ 77 (187)
...+|++. |-|..-...+...|+..||+|.. ..+.++..+.+...+ +|+|.+...+.. . .
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~-----------~diV~lS~~~~~~~~~ 85 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED-----------VDVIGVSILNGAHLHL 85 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT-----------CSEEEEEESSSCHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC-----------CCEEEEEeechhhHHH
Confidence 45788887 78888888999999999999985 356778888885444 559998887654 2 3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
..++++.+++.+. .+++|++ ...........+.+.|++.++..-.+..+....+..+....
T Consensus 86 ~~~~i~~L~~~g~-~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 86 MKRLMAKLRELGA-DDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HHHHHHHHHHTTC-TTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 4567788888653 3566664 44444445556778999986665556667777777776553
No 114
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.49 E-value=0.0006 Score=51.57 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=68.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
..+|||++|++..+..+.+.|...|+.+..+.+. ....+|++++|+.++...+
T Consensus 11 ~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~------------------~~~~~~~ii~d~~~~~~~~--------- 63 (254)
T 2ayx_A 11 GKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ------------------EPTPEDVLITDEVVSKKWQ--------- 63 (254)
T ss_dssp TEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC------------------CCCTTCEEEEESSCSCCCC---------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC------------------CCCcCcEEEEcCCCccccc---------
Confidence 5799999999999999999999999998877540 1235789999999886532
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
...++.++....... ...+...++.+|+...++...+.++..
T Consensus 64 -----~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 64 -----GRAVVTFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp -----SSEEEEECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred -----cceEEEEecccCCCc----ccccCCceeccccchHHHHHHHHHHhh
Confidence 223555554322110 123445789999999888888877663
No 115
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.60 E-value=0.0055 Score=45.05 Aligned_cols=67 Identities=10% Similarity=0.315 Sum_probs=51.2
Q ss_pred ccEEEEec-cCCCCCHH--HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee------eCCCChHHHHHHH
Q 046192 64 VNLIITDY-CMPGMTGY--DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF------LKPVQLADVNKLK 133 (187)
Q Consensus 64 ~dlvi~d~-~~~~~~g~--~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl------~kP~~~~~l~~~i 133 (187)
.++++.+. ..+.++|+ +.++.++.. .+.|+|.++...+.+...+++..|+++++ .+|++..++...+
T Consensus 145 ~~vli~~~~~~g~~~g~~~~~i~~~~~~---~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l 220 (237)
T 3cwo_X 145 GEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYL 220 (237)
T ss_dssp SEEEEEETTTTTCCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred CeEEEEecCCCCccccccHHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHH
Confidence 34788886 45555664 455665554 38999999999999999999999999984 6788888876654
No 116
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=96.00 E-value=0.12 Score=39.01 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=84.5
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
.+.+.+.|.+.-.++.....+.+.|...-|.+..+.+.++.++.+.. .+..+||+|+... +..-..+..
T Consensus 5 ~~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~---------~~e~iDcLvle~~--~~~~~~~~~ 73 (289)
T 1r8j_A 5 IVLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQT---------HRDQIDCLILVAA--NPSFRAVVQ 73 (289)
T ss_dssp -CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHH---------STTSCSEEEEETT--STTHHHHHH
T ss_pred ccccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHh---------ccccCCEEEEEeC--CCccHHHHH
Confidence 45678999999999999999999997777999999999999999965 3446999999862 234667888
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee-----eCCCChHHHHHHHHHHhhhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF-----LKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl-----~kP~~~~~l~~~i~~~~~~~ 140 (187)
.+.+.+- -+|+|++..... ....-..|-..|- ...-..+.+...+.+++.+.
T Consensus 74 ~L~~~g~--lLP~vil~~~~~---~~~~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 74 QLCFEGV--VVPAIVVGDRDS---EDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp HHHHTTC--CCCEEEESCCC---------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHH
T ss_pred HHHHcCc--cccEEEeccCcc---ccCCCCccceeccHHHHcCCHhHHHHHHHHHHHHHHHH
Confidence 9998876 889999876422 0000000112222 22334677777777777665
No 117
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=95.88 E-value=0.2 Score=34.10 Aligned_cols=109 Identities=9% Similarity=0.032 Sum_probs=71.5
Q ss_pred eCCHHHHHHHHHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC--CHHHHHHHHHhhc
Q 046192 15 DDSIIDRKLIERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM--TGYDLLRKIKESA 89 (187)
Q Consensus 15 d~~~~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~--~g~~~~~~l~~~~ 89 (187)
|-|..-...+...|+..||+|.. ..+.++..+.+...+ +|+|.+...+... ...++++.+++.+
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~-----------~d~v~lS~~~~~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK-----------ADAILVSSLYGQGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT-----------CSEEEEEECSSTHHHHHTTHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC-----------CCEEEEEecCcCcHHHHHHHHHHHHhcC
Confidence 34455556777888999999883 567888888885544 5599998877542 2345788888875
Q ss_pred CCCCCcEEEEeCCC--Chh---HHHHHHHhCCCceeeCCCChHHHHHHHHH
Q 046192 90 SLKDIPVVIMSSEN--IPS---RINRCLEEGAEEFFLKPVQLADVNKLKPH 135 (187)
Q Consensus 90 ~~~~~~iI~ls~~~--~~~---~~~~a~~~ga~~yl~kP~~~~~l~~~i~~ 135 (187)
. .+++|++=.... ..+ ....+.+.|++.|+..-.+..+....+..
T Consensus 83 ~-~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 83 L-EGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp C-TTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred C-CCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 4 256665443321 112 24457899999988776677766555543
No 118
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=95.80 E-value=0.11 Score=37.93 Aligned_cols=102 Identities=12% Similarity=0.099 Sum_probs=70.3
Q ss_pred ceEEEEE----eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C-CH
Q 046192 8 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M-TG 78 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~-~g 78 (187)
..+|++. |-|..-...+...|+..||+|... ...++..+.+...+ ||+|.+...++. . .-
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~-----------~d~v~lS~~~~~~~~~~ 156 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ-----------PDIVGMSALLTTTMMNM 156 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC-----------CSEEEEECCSGGGTHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC-----------CCEEEEeccccccHHHH
Confidence 4577777 677788889999999999999863 35667777774444 559999887654 2 24
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
.++++.+++.+..+++||++-....+.+.. -..|++.|....
T Consensus 157 ~~~i~~l~~~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~da 198 (210)
T 1y80_A 157 KSTIDALIAAGLRDRVKVIVGGAPLSQDFA---DEIGADGYAPDA 198 (210)
T ss_dssp HHHHHHHHHTTCGGGCEEEEESTTCCHHHH---HHHTCSEECSSH
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHH---HHcCCeEEECCH
Confidence 457788887653235888776665554443 457988776543
No 119
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=95.53 E-value=0.36 Score=36.48 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=75.6
Q ss_pred ceEEEEE----eCCHHHHHHHHHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CC-H
Q 046192 8 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MT-G 78 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~-g 78 (187)
..+|++. |-|..-...+...|+..||+|.. --+.++..+.+...+ ||+|.+...++. .. -
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~-----------~d~V~lS~l~~~~~~~~ 191 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK-----------PIMLTGTALMTTTMYAF 191 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC-----------CSEEEEECCCTTTTTHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC-----------CCEEEEEeeccCCHHHH
Confidence 4577776 66777778889999999998864 346677777775444 559999887654 33 4
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.++++.+++.++ .+||++-....+.++. -..|++.|.... .+..+.+..+..
T Consensus 192 ~~~i~~l~~~~~--~~~v~vGG~~~~~~~~---~~igad~~~~da---~~av~~~~~l~~ 243 (258)
T 2i2x_B 192 KEVNDMLLENGI--KIPFACGGGAVNQDFV---SQFALGVYGEEA---ADAPKIADAIIA 243 (258)
T ss_dssp HHHHHHHHTTTC--CCCEEEESTTCCHHHH---HTSTTEEECSST---THHHHHHHHHHT
T ss_pred HHHHHHHHhcCC--CCcEEEECccCCHHHH---HHcCCeEEECCH---HHHHHHHHHHHc
Confidence 468889998776 6787766655554433 367887776533 444455555553
No 120
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=95.43 E-value=0.12 Score=38.03 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=70.6
Q ss_pred ceEEEEE----eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEE--eccCCC-CC
Q 046192 8 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIIT--DYCMPG-MT 77 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~--d~~~~~-~~ 77 (187)
..+|++. |-|..=...+...|+..||+|... -+.++.++.+...+ ||+|.+ ...+.. ..
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~-----------~d~v~l~~S~l~~~~~~ 160 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK-----------GEKVLLVGSALMTTSML 160 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT-----------TSCEEEEEECSSHHHHT
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC-----------CCEEEEEchhcccCcHH
Confidence 4677776 667777788888899999999863 46677778885544 559988 776643 33
Q ss_pred -HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 78 -GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 78 -g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
-.++++.+++.+...++||++=....+.++ +-..||+.|-...
T Consensus 161 ~~~~~i~~l~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~dA 204 (215)
T 3ezx_A 161 GQKDLMDRLNEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAENA 204 (215)
T ss_dssp HHHHHHHHHHHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCSSH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEECCH
Confidence 446888888876433677776665555543 3467999886543
No 121
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=95.38 E-value=0.36 Score=36.54 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=65.5
Q ss_pred HHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCC-----CCCHHHHHHHHHhhcCCCCCcE
Q 046192 23 LIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-----GMTGYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 23 ~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-----~~~g~~~~~~l~~~~~~~~~~i 96 (187)
...+.|.+.||.+.. +.+.....+.+....+ ++| +....| +..-.++++.+++. + ++||
T Consensus 126 ~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~-----------~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~-~--~vPV 190 (265)
T 1wv2_A 126 KAAEQLVKDGFDVMVYTSDDPIIARQLAEIGC-----------IAV-MPLAGLIGSGLGICNPYNLRIILEE-A--KVPV 190 (265)
T ss_dssp HHHHHHHTTTCEEEEEECSCHHHHHHHHHSCC-----------SEE-EECSSSTTCCCCCSCHHHHHHHHHH-C--SSCB
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCC-----------CEE-EeCCccCCCCCCcCCHHHHHHHHhc-C--CCCE
Confidence 345555667999883 5544555555544444 355 443332 12347899999985 3 8999
Q ss_pred EEEeCCCChhHHHHHHHhCCCceee-----CCCChHHHHHHHHHHh
Q 046192 97 VIMSSENIPSRINRCLEEGAEEFFL-----KPVQLADVNKLKPHLM 137 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~~~ga~~yl~-----kP~~~~~l~~~i~~~~ 137 (187)
|+=..-..++.+..+++.|+++.+. |.-++......+...+
T Consensus 191 I~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 236 (265)
T 1wv2_A 191 LVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236 (265)
T ss_dssp EEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 9877778999999999999999764 4344666555544443
No 122
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=94.32 E-value=0.84 Score=34.62 Aligned_cols=114 Identities=10% Similarity=0.039 Sum_probs=73.2
Q ss_pred ceEEEEE----eCCHHHHHHHHHH--------HHhC-CceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEec
Q 046192 8 QFHVLAV----DDSIIDRKLIERL--------LKTS-SYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY 71 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l~~~--------l~~~-~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~ 71 (187)
..+|++. |-|..=...+..+ |+.. ||+|+. .-+.++.++.+... .+|+|.+..
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~-----------~~d~VglS~ 188 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVEL-----------EADVLLVSQ 188 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHT-----------TCSEEEEEC
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHc-----------CCCEEEEEe
Confidence 4566654 5555555666666 8888 999975 34677788888544 455999999
Q ss_pred cCCCC----C-HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHH
Q 046192 72 CMPGM----T-GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPH 135 (187)
Q Consensus 72 ~~~~~----~-g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~ 135 (187)
.+... . -.++++.+++.+...+++|++=....+.+ -+.+.|++.|..--....++...+..
T Consensus 189 l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~ 254 (262)
T 1xrs_B 189 TVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVK 254 (262)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHH
T ss_pred ecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHH
Confidence 87752 2 23467788776532246665444433333 36678999988877777666554443
No 123
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=93.95 E-value=1.3 Score=38.76 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=79.2
Q ss_pred ceEEEEE----eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C-CH
Q 046192 8 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M-TG 78 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~-~g 78 (187)
..+|++. |-|..-...+...|+..||+|... .+.++.++..... .+|+|.+...+.. + ..
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~-----------~adiVglSsl~~~~~~~~ 672 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDA-----------DVHAVGVSTLAAGHKTLV 672 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT-----------TCSEEEEEECSSCHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHc-----------CCCEEEEeeecHHHHHHH
Confidence 4566654 344444566777888899999863 4678888888444 4558888876653 2 35
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.++++.|++.+. .++ .|++...........+.+.|+++|+..-.+..+....+...+..
T Consensus 673 ~~vi~~Lr~~G~-~dv-~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~ 731 (762)
T 2xij_A 673 PELIKELNSLGR-PDI-LVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEK 731 (762)
T ss_dssp HHHHHHHHHTTC-TTS-EEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCC-EEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHH
Confidence 568888988765 233 34455423343456678999999998666777777666666644
No 124
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=93.36 E-value=1.4 Score=32.54 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEecc------CCCCCHHHHHHHHHhhc
Q 046192 17 SIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC------MPGMTGYDLLRKIKESA 89 (187)
Q Consensus 17 ~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~------~~~~~g~~~~~~l~~~~ 89 (187)
+|.....+.+.+++.|..+.. +.+.+++..... ..+|.|.+... .+...++++++.+++.
T Consensus 114 ~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~------------~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~- 180 (229)
T 3q58_A 114 RPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQ------------KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA- 180 (229)
T ss_dssp CSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHH------------TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT-
T ss_pred ChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHh------------CCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc-
Confidence 344445555566666765554 788888766552 23667754322 1234567888888763
Q ss_pred CCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 90 SLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 90 ~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
++|+|.-+.-.+.+.+.+++..||++.+.
T Consensus 181 ---~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 181 ---GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp ---TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ---CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 68999888888899999999999999865
No 125
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=93.22 E-value=1.3 Score=38.49 Aligned_cols=118 Identities=11% Similarity=0.110 Sum_probs=77.8
Q ss_pred CceEEEEE----eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C-C
Q 046192 7 SQFHVLAV----DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M-T 77 (187)
Q Consensus 7 ~~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~-~ 77 (187)
...+|++. |-|..-...+...|+..||+|... .+.++.++..... .+|+|.+...+.. + .
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~-----------~adiVglSsl~~~~~~~ 663 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEA-----------DVHVVGVSSLAGGHLTL 663 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHT-----------TCSEEEEEECSSCHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHc-----------CCCEEEEeeecHhHHHH
Confidence 34566654 444455566777888889999863 4678888888444 4558888886653 2 3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
..++++.|++.+. .++ .|++...........+.+.|+++|+..-.+..++...+...+
T Consensus 664 ~~~vi~~L~~~G~-~~i-~VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l 721 (727)
T 1req_A 664 VPALRKELDKLGR-PDI-LITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKL 721 (727)
T ss_dssp HHHHHHHHHHTTC-TTS-EEEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCC-EEEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHH
Confidence 5568888988764 233 444554333444566789999999986667777655554444
No 126
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=93.15 E-value=0.44 Score=36.16 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=62.5
Q ss_pred HHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC-----HHHHHHHHHhhcCCCC-CcEE
Q 046192 25 ERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT-----GYDLLRKIKESASLKD-IPVV 97 (187)
Q Consensus 25 ~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~-----g~~~~~~l~~~~~~~~-~~iI 97 (187)
.+.|.+.||.|. .+.+.-...+.+....| ++| +.+..|-.+ -.++++.+++..+ + +|||
T Consensus 117 a~~L~k~Gf~Vlpy~~~D~~~ak~l~~~G~-----------~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~--~~vPVI 182 (268)
T 2htm_A 117 AERLIEEDFLVLPYMGPDLVLAKRLAALGT-----------ATV-MPLAAPIGSGWGVRTRALLELFAREKA--SLPPVV 182 (268)
T ss_dssp HHHHHHTTCEECCEECSCHHHHHHHHHHTC-----------SCB-EEBSSSTTTCCCSTTHHHHHHHHHTTT--TSSCBE
T ss_pred HHHHHHCCCEEeeccCCCHHHHHHHHhcCC-----------CEE-EecCccCcCCcccCCHHHHHHHHHhcC--CCCeEE
Confidence 344445699877 34333354455544444 355 554443222 3567888888433 6 9999
Q ss_pred EEeCCCChhHHHHHHHhCCCceee-----CCCChHHHHHHHHHHh
Q 046192 98 IMSSENIPSRINRCLEEGAEEFFL-----KPVQLADVNKLKPHLM 137 (187)
Q Consensus 98 ~ls~~~~~~~~~~a~~~ga~~yl~-----kP~~~~~l~~~i~~~~ 137 (187)
+=..-.+.+.+..+++.|+++.+. |.-++......+....
T Consensus 183 ~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 227 (268)
T 2htm_A 183 VDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAV 227 (268)
T ss_dssp EESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 877788999999999999999764 4444666555554443
No 127
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=92.57 E-value=1.4 Score=37.73 Aligned_cols=117 Identities=10% Similarity=0.085 Sum_probs=73.8
Q ss_pred ceEEEEE----eCCHHHHHHH----HHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-
Q 046192 8 QFHVLAV----DDSIIDRKLI----ERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG- 75 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l----~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~- 75 (187)
..+|++. |-|..=...+ ...|+..||+|.- ..+.++.++.+...+ +|+|.+...+..
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed-----------ADVVGLSsLLTt~ 670 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK-----------ADAILASTIISHD 670 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT-----------CSEEEEECCCCGG
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC-----------CCEEEEeccccCc
Confidence 4677766 3333222222 4678888999986 347788888885544 559999988776
Q ss_pred ---CCH-HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 76 ---MTG-YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 76 ---~~g-~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+.. -++++.+++.+....++|++=....+.+. +...|++.|.....+..++...+.....
T Consensus 671 dihL~~MkevIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~ 734 (763)
T 3kp1_A 671 DIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRR 734 (763)
T ss_dssp GHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHH
Confidence 233 35788888876532355554333344433 4589999998877777666555444443
No 128
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=92.20 E-value=2.6 Score=31.20 Aligned_cols=88 Identities=14% Similarity=0.160 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEecc------CCCCCHHHHHHHHHhhcC
Q 046192 18 IIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC------MPGMTGYDLLRKIKESAS 90 (187)
Q Consensus 18 ~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~------~~~~~g~~~~~~l~~~~~ 90 (187)
|.....+.+.++..|..+.. +.+.+++..... ..+|.|.+... -....++++++.+++.
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~------------~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~-- 180 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQR------------LGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA-- 180 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHH------------TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHh------------CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc--
Confidence 44445555666666765554 778877766542 23667754321 1224467888888874
Q ss_pred CCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 91 LKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 91 ~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
++|+|.-+.-.+.+.+.+++..||++.+.
T Consensus 181 --~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 181 --GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp --TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred --CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 68999888888899999999999999864
No 129
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.20 E-value=0.49 Score=37.58 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=68.4
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhC---CceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTS---SYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~---~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
..+++++|+|.|+...+.|.+++.+. .|.+..+++.+.+.+.+. ..++|++++|-......
T Consensus 19 ~~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~-----------~~~~dilli~e~~~~~~----- 82 (373)
T 3fkq_A 19 GMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVK-----------EYRIDVLIAEEDFNIDK----- 82 (373)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHH-----------HHTCSEEEEETTCCCCG-----
T ss_pred CceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHh-----------cCCCCEEEEcchhhhhh-----
Confidence 34799999999999999999999653 589999999999999984 34567999997765421
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.... ...++++++.....+. ..-...+.|--+.+++...+....
T Consensus 83 ---~~~~--~~~~v~~l~~~~~~~~------~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 83 ---SEFK--RNCGLAYFTGTPGIEL------IKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp ---GGGC--SSCEEEEEESCTTCCE------ETTEEEEETTSCHHHHHHHHHHHH
T ss_pred ---hhhc--ccCcEEEEECCCCCCc------CCCCceeeccCCHHHHHHHHHHHH
Confidence 1111 1445666655432210 011124677667777655554444
No 130
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=91.90 E-value=1.7 Score=32.29 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=63.6
Q ss_pred HHHHHHhCCc-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 24 IERLLKTSSY-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 24 l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
+.+.|.+.+. -|....+.+++....+..-.. - +-.+.+.+...++.+.++.+++..+ . .+|-....
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~g--------G--i~~iEvt~~t~~a~e~I~~l~~~~~--~-~~iGaGTV 93 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAEN--------G--LPAAEITFRSDAAVEAIRLLRQAQP--E-MLIGAGTI 93 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHT--------T--CCEEEEETTSTTHHHHHHHHHHHCT--T-CEEEEECC
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHC--------C--CCEEEEeCCCCCHHHHHHHHHHhCC--C-CEEeECCc
Confidence 4455555563 334467777777776544321 2 3345555556678999999998764 4 45556667
Q ss_pred CChhHHHHHHHhCCCceeeCCCChHHHHHHHHH
Q 046192 103 NIPSRINRCLEEGAEEFFLKPVQLADVNKLKPH 135 (187)
Q Consensus 103 ~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~ 135 (187)
-+.+.+..+..+||+ |+.-|-...++.+..+.
T Consensus 94 lt~~~a~~Ai~AGA~-fIvsP~~~~~vi~~~~~ 125 (232)
T 4e38_A 94 LNGEQALAAKEAGAT-FVVSPGFNPNTVRACQE 125 (232)
T ss_dssp CSHHHHHHHHHHTCS-EEECSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCC-EEEeCCCCHHHHHHHHH
Confidence 789999999999997 45556555666555444
No 131
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=91.68 E-value=3 Score=30.64 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHH
Q 046192 75 GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPH 135 (187)
Q Consensus 75 ~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~ 135 (187)
..++.+.++.+++..+ + .+|-.....+.+.+..+..+||+-. .-|....++.+..++
T Consensus 48 t~~a~~~I~~l~~~~p--~-~~IGAGTVlt~~~a~~ai~AGA~fi-vsP~~~~evi~~~~~ 104 (217)
T 3lab_A 48 TEAGLAAISAIKKAVP--E-AIVGAGTVCTADDFQKAIDAGAQFI-VSPGLTPELIEKAKQ 104 (217)
T ss_dssp STTHHHHHHHHHHHCT--T-SEEEEECCCSHHHHHHHHHHTCSEE-EESSCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHCC--C-CeEeeccccCHHHHHHHHHcCCCEE-EeCCCcHHHHHHHHH
Confidence 3467788888888765 4 5777777788999999999999844 446555555554443
No 132
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=91.07 E-value=2.2 Score=33.29 Aligned_cols=108 Identities=8% Similarity=0.040 Sum_probs=67.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
..+++++++.+. ..+.+.++... +.+...-+..+..+.+. ..|++++-......-|..+++.+
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~-------------~adv~v~ps~~~e~~~~~~~Ea~ 304 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMR-------------SADVYCAPHLGGESFGIVLVEAM 304 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHH-------------HSSEEEECCCSCCSSCHHHHHHH
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHH-------------HCCEEEecCCCCCCCchHHHHHH
Confidence 456667766655 45555554321 22222334444455542 24577765332445577788887
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.. .+|+|... .....+.+..|..+++..|.+.+++.+++..++..
T Consensus 305 a~-----G~PvI~~~----~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 305 AA-----GTAVVASD----LDAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp HH-----TCEEEECC----CHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred Hc-----CCCEEEec----CCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 65 67877532 24556677778899999999999999999988764
No 133
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=88.99 E-value=2.6 Score=33.28 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=64.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCce----------EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQ----------VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT 77 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~----------v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~ 77 (187)
..+++|+.+.+.....+.+.+++.|.. +.......+....+. ..|++++--...+..
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~-------------~aDv~vl~ss~~e~g 291 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYP-------------VGKIAIVGGTFVNIG 291 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGG-------------GEEEEEECSSSSSSC
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHH-------------hCCEEEECCcccCCC
Confidence 467888888887666777777776643 222222234444442 256877643332223
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHH-HHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRC-LEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a-~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
|..+++.+.. .+|||.-+...+....... .. ++++..|-+.++|.+++..++..
T Consensus 292 g~~~lEAmA~-----G~PVI~~~~~~~~~e~~~~~~~---~G~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 292 GHNLLEPTCW-----GIPVIYGPYTHKVNDLKEFLEK---EGAGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp CCCCHHHHTT-----TCCEEECSCCTTSHHHHHHHHH---TTCEEECCSHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHh-----CCCEEECCCccChHHHHHHHHH---CCCEEEeCCHHHHHHHHHHHHhH
Confidence 4445665543 7889853233333333322 23 34677777899999999998863
No 134
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=88.82 E-value=2.1 Score=32.26 Aligned_cols=58 Identities=19% Similarity=0.340 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCC------ChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSEN------IPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~------~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.+++++.+|+..| ++|+++++-.. .......+.+.|+++++.-.+..+++...+..+.
T Consensus 81 ~~~~v~~ir~~~~--~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~ 144 (262)
T 2ekc_A 81 VLELSETLRKEFP--DIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMK 144 (262)
T ss_dssp HHHHHHHHHHHCT--TSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 3456788887654 78999874331 1455677889999999998777777666655544
No 135
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=88.51 E-value=5.2 Score=33.87 Aligned_cols=101 Identities=12% Similarity=0.213 Sum_probs=68.7
Q ss_pred ceEEEEE----eCCHHHHHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C-CH
Q 046192 8 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M-TG 78 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~-~g 78 (187)
..+|++. |-|..-...+..+|+..||+|+.. -..++.++.+... .+|+|.+...+.. . .-
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~-----------~~diVgLS~l~t~~~~~m 166 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEV-----------NADLIGLSGLITPSLDEM 166 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHH-----------TCSEEEEECCSTHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-----------CCCEEEEEecCCCCHHHH
Confidence 4677777 566777788888889999999763 4677777777544 4559999886653 2 23
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHh-----CCCceeeCC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEE-----GAEEFFLKP 123 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~-----ga~~yl~kP 123 (187)
.++++.+++.++ ++||++=....+.++.. -.. ||+.|....
T Consensus 167 ~~~i~~Lr~~g~--~i~ViVGGa~~~~~~a~--~~i~p~~~GAD~ya~DA 212 (579)
T 3bul_A 167 VNVAKEMERQGF--TIPLLIGGATTSKAHTA--VKIEQNYSGPTVYVQNA 212 (579)
T ss_dssp HHHHHHHHHTTC--CSCEEEESTTCCHHHHH--HHTGGGCSSCEEECCSH
T ss_pred HHHHHHHHHcCC--CCeEEEEccccchhhhh--hhhhhcccCCeEEECCH
Confidence 357788888765 78887666655555432 123 888776543
No 136
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=87.96 E-value=5.1 Score=27.82 Aligned_cols=106 Identities=9% Similarity=0.087 Sum_probs=70.6
Q ss_pred ceEEEEEeCCH-HHHHHHHHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 8 QFHVLAVDDSI-IDRKLIERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 8 ~~~ilivd~~~-~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
..+++++++.+ .....+...++..+ .|.. .-+.++....+. ..|++++-... ..-|..+++
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~-------------~ad~~l~ps~~-e~~~~~~~E 134 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG-------------SVDFVIIPSYF-EPFGLVALE 134 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT-------------TCSEEEECCSC-CSSCHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH-------------HCCEEEECCCC-CCccHHHHH
Confidence 57778887654 24566777777766 3443 334556666662 25687775443 445677777
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.+.. .+|+|.. .. ....+.+ .|-.+++..|-+.+++.+.+..++.
T Consensus 135 a~a~-----G~PvI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 135 AMCL-----GAIPIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp HHHT-----TCEEEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred HHHC-----CCCEEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 7765 7787754 22 2344445 6788999999999999999998886
No 137
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=87.64 E-value=2 Score=31.90 Aligned_cols=100 Identities=12% Similarity=0.183 Sum_probs=60.9
Q ss_pred HHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCC-----CCCHHHHHHHHHhhcCCCCCcE
Q 046192 24 IERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-----GMTGYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 24 l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-----~~~g~~~~~~l~~~~~~~~~~i 96 (187)
.-..|+..|+.+.. +.++...+..+.. -++|.|=+|..+- +.....+++.+.......++.+
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L~~-----------l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~v 212 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYLTR-----------LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEV 212 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHHHH-----------SCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHh-----------CCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeE
Confidence 34455667988876 6677777888844 4566999996331 1223334554443322114444
Q ss_pred EEEeCCCChhHHHHHHHhCCC---ce-eeCCCChHHHHHHHHH
Q 046192 97 VIMSSENIPSRINRCLEEGAE---EF-FLKPVQLADVNKLKPH 135 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~~~ga~---~y-l~kP~~~~~l~~~i~~ 135 (187)
| ...-.+.+....+.+.|++ +| +.||.+.+++...+..
T Consensus 213 i-aeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 213 V-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp E-ECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred E-EEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 4 5555678888888899976 34 7899999998776543
No 138
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=87.04 E-value=6.8 Score=29.46 Aligned_cols=101 Identities=11% Similarity=0.075 Sum_probs=62.2
Q ss_pred HHHHHHhCC--ceEEEeC-CHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEe
Q 046192 24 IERLLKTSS--YQVTAVD-SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMS 100 (187)
Q Consensus 24 l~~~l~~~~--~~v~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls 100 (187)
+++.|.... +.++... +....++.+ ....+|.|++|+.-.-.+.-.+...++........++|-+-
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a-----------~~~g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn 74 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIY-----------AEAGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIP 74 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHH-----------HHTTCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHH-----------hcCCcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeC
Confidence 455565432 2333333 455666666 34458899999988777766666666553211133444444
Q ss_pred CCCChhHHHHHHHhCCCceee-CCCChHHHHHHHHHH
Q 046192 101 SENIPSRINRCLEEGAEEFFL-KPVQLADVNKLKPHL 136 (187)
Q Consensus 101 ~~~~~~~~~~a~~~ga~~yl~-kP~~~~~l~~~i~~~ 136 (187)
. .+...+..++..|+++.+. |--+.+++..+...+
T Consensus 75 ~-~~~~di~~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 75 Q-VDRAHVQRLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp S-CCHHHHHHHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 4 4667889999999998754 444677776666554
No 139
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=86.35 E-value=9.1 Score=28.99 Aligned_cols=89 Identities=10% Similarity=-0.013 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC--CCHHHHHHHHHhhcCCCCCcE
Q 046192 20 DRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG--MTGYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~--~~g~~~~~~l~~~~~~~~~~i 96 (187)
....+.......|..+.. +.+.+++...+.. .+|++-+.-.-.. ..+++.+..+.+..+ .++|+
T Consensus 150 ~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~------------Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~-~~~pv 216 (272)
T 3qja_A 150 VLVSMLDRTESLGMTALVEVHTEQEADRALKA------------GAKVIGVNARDLMTLDVDRDCFARIAPGLP-SSVIR 216 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH------------TCSEEEEESBCTTTCCBCTTHHHHHGGGSC-TTSEE
T ss_pred HHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC------------CCCEEEECCCcccccccCHHHHHHHHHhCc-ccCEE
Confidence 344455555667876654 7888876555421 2567777642211 123566777776543 26888
Q ss_pred EEEeCCCChhHHHHHHHhCCCceee
Q 046192 97 VIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
|..+.-.+.+.+..+.+.|+++++.
T Consensus 217 VaegGI~t~edv~~l~~~GadgvlV 241 (272)
T 3qja_A 217 IAESGVRGTADLLAYAGAGADAVLV 241 (272)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEE
Confidence 8888888899999999999999976
No 140
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=86.03 E-value=6.5 Score=31.68 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=38.4
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..|+||+-+.-+ .....++..+++.+| +++||+-+. +........++||+..+.
T Consensus 68 ~A~~viv~~~~~-~~n~~i~~~ar~~~p--~~~Iiara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 68 KAEVLINAIDDP-QTNLQLTEMVKEHFP--HLQIIARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp TCSEEEECCSSH-HHHHHHHHHHHHHCT--TCEEEEEES--SHHHHHHHHHTTCSSCEE
T ss_pred ccCEEEECCCCh-HHHHHHHHHHHHhCC--CCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 467888876432 234557778888876 777877665 477888888999997664
No 141
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=85.85 E-value=5.8 Score=26.32 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=57.1
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCc-----c---ccccc--ccccccEEEEeccCCCCCH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNE-----D---EQTNS--QVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~-----~---~~~~~--~~~~~dlvi~d~~~~~~~g 78 (187)
-+|+|++-.. +...+...|...|+.|..+....+.++.+....- | +.++. .-...|++++-+.-+. ..
T Consensus 8 ~~viIiG~G~-~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~-~n 85 (140)
T 3fwz_A 8 NHALLVGYGR-VGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGY-EA 85 (140)
T ss_dssp SCEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHH-HH
T ss_pred CCEEEECcCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChH-HH
Confidence 4566666644 3444555555566666665444444433321100 0 00000 1235678877654322 22
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..++..+++..+ ..++|.... +.+......+.|++..+.
T Consensus 86 ~~~~~~a~~~~~--~~~iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 86 GEIVASARAKNP--DIEIIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp HHHHHHHHHHCS--SSEEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHCC--CCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 345667777765 677776554 467777778899885554
No 142
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=85.85 E-value=3.8 Score=31.94 Aligned_cols=110 Identities=18% Similarity=0.171 Sum_probs=60.5
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHh-CCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH
Q 046192 2 GMVTDSQFHVLAVDDSIIDRKLIERLLKT-SSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY 79 (187)
Q Consensus 2 ~~~~~~~~~ilivd~~~~~~~~l~~~l~~-~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~ 79 (187)
.||+..+++|.||+--..-...+..+.+. .+++++. +....+..+.+.. .+.+-..+ +--
T Consensus 7 ~m~~~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~------------~~~~~~~~------~~~ 68 (354)
T 3q2i_A 7 PPITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVE------------RTGARGHA------SLT 68 (354)
T ss_dssp CCCCSSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH------------HHCCEEES------CHH
T ss_pred ecCCCCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHH------------HcCCceeC------CHH
Confidence 34556779999999877666666555554 4677664 4433333333311 01121111 111
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHH
Q 046192 80 DLLRKIKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHL 136 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~ 136 (187)
++ +.. + ++-+|+++.. ...+.+..+++.|.+=++-||+. .++..+.++.+
T Consensus 69 ~l---l~~--~--~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a 122 (354)
T 3q2i_A 69 DM---LAQ--T--DADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAA 122 (354)
T ss_dssp HH---HHH--C--CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHH
T ss_pred HH---hcC--C--CCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHH
Confidence 22 222 1 4445555443 33556778899998888999964 45554444433
No 143
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=85.57 E-value=4.3 Score=29.91 Aligned_cols=52 Identities=10% Similarity=0.309 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCC------hhHHHHHHHhCCCceeeCCCChHHHHHH
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENI------PSRINRCLEEGAEEFFLKPVQLADVNKL 132 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~------~~~~~~a~~~ga~~yl~kP~~~~~l~~~ 132 (187)
+.++++.+++.. +.||.+++.... .+.+..+.+.||+..+.-....++....
T Consensus 68 ~~~~i~~i~~~~---~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~ 125 (248)
T 1geq_A 68 AFWIVKEFRRHS---STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEF 125 (248)
T ss_dssp HHHHHHHHHTTC---CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHH
T ss_pred HHHHHHHHHhhC---CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHH
Confidence 467888888763 678888764222 5788889999999998865555443333
No 144
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=85.13 E-value=8.5 Score=27.54 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=34.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhcc
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLL 51 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~ 51 (187)
..+|+++-..+.......++....+.++.. ..+.++++......
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~ 48 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGL 48 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHH
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHh
Confidence 568999999999999888888876656554 57788888877554
No 145
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=84.88 E-value=4.5 Score=31.12 Aligned_cols=94 Identities=7% Similarity=0.010 Sum_probs=54.3
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY 79 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~ 79 (187)
|.|+.....+|||-+...-+...+...|.+.|+.|..+ .+.+.+-+....... ......+.++..++.+.+.+
T Consensus 1 M~m~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~------~~~~~~~~~~~~Dl~~~~~v 74 (319)
T 3ioy_A 1 MSLKDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEA------EGSGPEVMGVQLDVASREGF 74 (319)
T ss_dssp --CCCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------HTCGGGEEEEECCTTCHHHH
T ss_pred CCccCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCCCeEEEEECCCCCHHHH
Confidence 66655556689999999988999999998889988764 443333222211110 11112355555555554444
Q ss_pred -HHHHHHHhhcCCCCCcEEEEeCC
Q 046192 80 -DLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 80 -~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
++++.+.+... .+-+++..+.
T Consensus 75 ~~~~~~~~~~~g--~id~lv~nAg 96 (319)
T 3ioy_A 75 KMAADEVEARFG--PVSILCNNAG 96 (319)
T ss_dssp HHHHHHHHHHTC--CEEEEEECCC
T ss_pred HHHHHHHHHhCC--CCCEEEECCC
Confidence 36667766554 5566665543
No 146
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=84.88 E-value=8.2 Score=29.54 Aligned_cols=107 Identities=14% Similarity=0.218 Sum_probs=65.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
..+++++++.+. ..+.+..+..+. .|......++..+.+. ..|++++-.. ...-|..+++.+
T Consensus 228 ~~~l~i~G~g~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-------------~ad~~v~ps~-~e~~~~~~~Ea~ 291 (374)
T 2iw1_A 228 NTLLFVVGQDKP--RKFEALAEKLGVRSNVHFFSGRNDVSELMA-------------AADLLLHPAY-QEAAGIVLLEAI 291 (374)
T ss_dssp TEEEEEESSSCC--HHHHHHHHHHTCGGGEEEESCCSCHHHHHH-------------HCSEEEECCS-CCSSCHHHHHHH
T ss_pred ceEEEEEcCCCH--HHHHHHHHHcCCCCcEEECCCcccHHHHHH-------------hcCEEEeccc-cCCcccHHHHHH
Confidence 356677776542 445555554431 3443333333444442 2457776543 345577788887
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC-CCChHHHHHHHHHHhhh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK-PVQLADVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k-P~~~~~l~~~i~~~~~~ 139 (187)
.. .+|+|........ +.+..|..+++.. |.+.+++.+++..++..
T Consensus 292 a~-----G~Pvi~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~ 337 (374)
T 2iw1_A 292 TA-----GLPVLTTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALTQ 337 (374)
T ss_dssp HH-----TCCEEEETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHHC
T ss_pred HC-----CCCEEEecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHcC
Confidence 65 7788875543333 3345567789887 89999999999998864
No 147
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=84.25 E-value=2.2 Score=31.83 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=45.8
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCC
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV 124 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~ 124 (187)
.||++|+=.-.|...|..-.+.+.... +.|.|++++..... ..++++..-.+|++-+.
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~~---~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~ 121 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLADS---EYPAVIIGDAPGLK-VKDEMEEQGLGYILVKP 121 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHTS---SSCEEEEEEGGGGG-GHHHHHHTTCEEEEETT
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhC---CCCEEEEcCCcchh-hHHHHHhcCCcEEEEec
Confidence 466999888888888998888877654 89999999986666 66888888888876544
No 148
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=83.95 E-value=5.1 Score=29.49 Aligned_cols=56 Identities=16% Similarity=0.366 Sum_probs=40.1
Q ss_pred cccEEEEeccCCCCCH-------HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMTG-------YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g-------~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|.|++....|+..| ++-++.+|+..+ +.++. +...-+.+.+..+.++||+.++.
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~--~~~I~-VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFP--SLDIE-VDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCT--TCEEE-EESSCSTTTHHHHHHHTCCEEEE
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcC--CCCEE-EeCCcCHHHHHHHHHcCCCEEEE
Confidence 3788888777777654 455777777654 55554 55555788999999999998654
No 149
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=83.88 E-value=14 Score=28.90 Aligned_cols=107 Identities=9% Similarity=0.105 Sum_probs=72.1
Q ss_pred CceEEEEEeCCHH-HHHHHHHHHHhCCceEEE-eC--CHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 7 SQFHVLAVDDSII-DRKLIERLLKTSSYQVTA-VD--SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 7 ~~~~ilivd~~~~-~~~~l~~~l~~~~~~v~~-~~--~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
...+++|+++.+. ....+.+..+..+ .+.. .. +.++..+.+. ..|++++-... ..-|..++
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~-------------~adv~v~ps~~-e~~~~~~~ 348 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG-------------SVDFVIIPSYF-EPFGLVAL 348 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT-------------TCSEEEECBSC-CSSCHHHH
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHH-------------HCCEEEeCCCC-CCccHHHH
Confidence 4678888887653 3366777777776 4443 33 5566666663 24577766544 45667777
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+.+.. .+|+|.... ....+.+..| .+++..|.+.+++.+++..++.
T Consensus 349 EAma~-----G~Pvi~s~~----~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 349 EAMCL-----GAIPIASAV----GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp HHHHT-----TCEEEEESS----THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHC-----CCCeEEcCC----CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 77765 778876432 2344455566 8999999999999999998887
No 150
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=83.83 E-value=1.6 Score=33.12 Aligned_cols=58 Identities=14% Similarity=0.361 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCC------ChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSEN------IPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~------~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
+++++.+|+... ++|+++++-.. ......++.++|+++.+.-....++..+.+..+.+
T Consensus 83 ~~~v~~ir~~~~--~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~ 146 (267)
T 3vnd_A 83 FDIITKVRAQHP--DMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKA 146 (267)
T ss_dssp HHHHHHHHHHCT--TCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHH
Confidence 567777777644 78998886432 26678889999999998877777665555544443
No 151
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=83.81 E-value=2 Score=32.71 Aligned_cols=58 Identities=14% Similarity=0.361 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeC------CCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSS------ENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~------~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.+++++.+|+..+ ++|+++++- +.-.....++.++|+++.+.-...+++.......+.
T Consensus 84 ~~~~v~~~r~~~~--~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~ 147 (271)
T 3nav_A 84 CFELIAQIRARNP--ETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAE 147 (271)
T ss_dssp HHHHHHHHHHHCT--TSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 3567777887654 889998863 234667888999999999887666666544444443
No 152
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=83.66 E-value=1.6 Score=32.99 Aligned_cols=58 Identities=17% Similarity=0.409 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCC------CChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSE------NIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~------~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
++++++.+|+... ++|+++++-. .....+..+.++|+++++.-....+++...+..+.
T Consensus 81 ~~~~v~~ir~~~~--~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~ 144 (268)
T 1qop_A 81 CFEMLAIIREKHP--TIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAAL 144 (268)
T ss_dssp HHHHHHHHHHHCS--SSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 4466788887644 7898887522 22577888999999999988777666555554443
No 153
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=83.27 E-value=0.93 Score=34.31 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=26.3
Q ss_pred ceEEEEEeCC--HHHHHHHHHHHHhCCceEEEeCC
Q 046192 8 QFHVLAVDDS--IIDRKLIERLLKTSSYQVTAVDS 40 (187)
Q Consensus 8 ~~~ilivd~~--~~~~~~l~~~l~~~~~~v~~~~~ 40 (187)
+.+||||+++ +.-...+...|+..||+|.....
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~ 38 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPS 38 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECT
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecc
Confidence 4699999998 66778899999999999887543
No 154
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=83.04 E-value=6.3 Score=30.00 Aligned_cols=106 Identities=8% Similarity=0.052 Sum_probs=65.0
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEE--EeCCHHHHHHHHhccCcccccccccccccEEEEecc---------CCCCC
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVT--AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC---------MPGMT 77 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~---------~~~~~ 77 (187)
.+++|+++.+ ....+.++.+..+-.|. ..-+..+..+.+. ..|++++-.. ....-
T Consensus 189 ~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~-------------~adv~v~ps~~~~~~~~~~~~E~~ 254 (342)
T 2iuy_A 189 RRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLA-------------SAHAVLAMSQAVTGPWGGIWCEPG 254 (342)
T ss_dssp CCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHH-------------HCSEEEECCCCCCCTTCSCCCCCC
T ss_pred cEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHH-------------hCCEEEECCcccccccccccccCc
Confidence 4566777654 23344444443332233 2334455555552 2457776544 24556
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHh--CCCceeeCCCChHHHHHHHHHHhh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEE--GAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~--ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
|..+++.+.. .+|+|.... ....+.+.. |..+++..| +.+++.+++..++.
T Consensus 255 ~~~~~EAma~-----G~PvI~s~~----~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 255 ATVVSEAAVS-----GTPVVGTGN----GCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp CHHHHHHHHT-----TCCEEECCT----TTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred cHHHHHHHhc-----CCCEEEcCC----CChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 7778887765 778875433 234555666 788999999 99999999988876
No 155
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=82.05 E-value=9.9 Score=26.00 Aligned_cols=107 Identities=7% Similarity=0.106 Sum_probs=65.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHH--hC----CceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLK--TS----SYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDL 81 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~--~~----~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 81 (187)
..+++++.+.+.. ..+.+.+. .. .+.+...-+.++....+. ..|++++-.. ...-|..+
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~-------------~adi~v~ps~-~e~~~~~~ 114 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYS-------------RCKGLLCTAK-DEDFGLTP 114 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHH-------------HCSEEEECCS-SCCSCHHH
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHH-------------hCCEEEeCCC-cCCCChHH
Confidence 3566777655432 23334333 21 233444445555666663 2457776333 34456777
Q ss_pred HHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 82 LRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
++.+.. .+|+|.... ....+.+..|..+++. |.+.+++.+++..++..
T Consensus 115 ~Eama~-----G~PvI~~~~----~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 115 IEAMAS-----GKPVIAVNE----GGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp HHHHHT-----TCCEEEESS----HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred HHHHHc-----CCcEEEeCC----CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 777764 778876432 3445555667788988 99999999999998854
No 156
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=81.54 E-value=6.8 Score=29.29 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=49.2
Q ss_pred ccEEEEeccC----CC-CCHHHHHHHHHhhcCCCCCcEEE-EeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 64 VNLIITDYCM----PG-MTGYDLLRKIKESASLKDIPVVI-MSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 64 ~dlvi~d~~~----~~-~~g~~~~~~l~~~~~~~~~~iI~-ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.|.+=+|+.- |+ .-|..+++.||+..| +.|+.+ +--.....++..+.++||+.+..-.....++.+.++.+.
T Consensus 54 ~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p--~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir 131 (246)
T 3inp_A 54 ADNIHFDVMDNHYVPNLTFGPMVLKALRDYGI--TAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIK 131 (246)
T ss_dssp CCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTC--CSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHH
T ss_pred CCEEEEEecCCCcCcchhcCHHHHHHHHHhCC--CCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHH
Confidence 3455555533 33 348999999999875 677766 444445678888999999988777654455666666654
Q ss_pred h
Q 046192 138 K 138 (187)
Q Consensus 138 ~ 138 (187)
+
T Consensus 132 ~ 132 (246)
T 3inp_A 132 S 132 (246)
T ss_dssp T
T ss_pred H
Confidence 3
No 157
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=80.80 E-value=13 Score=29.20 Aligned_cols=109 Identities=6% Similarity=0.088 Sum_probs=67.0
Q ss_pred ceEEEEEeCC---HHHHHHHHHHHHhCCc--eEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHH
Q 046192 8 QFHVLAVDDS---IIDRKLIERLLKTSSY--QVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYD 80 (187)
Q Consensus 8 ~~~ilivd~~---~~~~~~l~~~l~~~~~--~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~ 80 (187)
..+++|+++. ......+.+..++.|. .|.. .-+.++..+.+. ..|++++-.. ...-|..
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~-------------~adv~v~ps~-~e~~~~~ 341 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYR-------------AADIVAVPSF-NESFGLV 341 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHH-------------HCSEEEECCS-CCSSCHH
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHH-------------hCCEEEECcc-ccCCchH
Confidence 4677777761 1234556666665442 2333 334466666663 2457776443 3445677
Q ss_pred HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 81 LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+++.+.. .+|||..... ...+.+..|..+++..|.+.+++.+++..++..
T Consensus 342 ~~Eama~-----G~PvI~~~~~----~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 391 (438)
T 3c48_A 342 AMEAQAS-----GTPVIAARVG----GLPIAVAEGETGLLVDGHSPHAWADALATLLDD 391 (438)
T ss_dssp HHHHHHT-----TCCEEEESCT----THHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHc-----CCCEEecCCC----ChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcC
Confidence 7777764 7788764332 233445567788999999999999999988764
No 158
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=80.67 E-value=5.9 Score=31.10 Aligned_cols=109 Identities=10% Similarity=0.216 Sum_probs=55.3
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhC-CceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTS-SYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~-~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
|+| ++.++||.||+--..-.......+... +++++. +....+.... ..++ +-..+ +
T Consensus 1 M~~-~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~---~~~~-----------~~~~~------~- 58 (364)
T 3e82_A 1 MSL-SNNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR---DLPD-----------VTVIA------S- 58 (364)
T ss_dssp -------CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH---HCTT-----------SEEES------C-
T ss_pred CCC-CCCcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh---hCCC-----------CcEEC------C-
Confidence 543 455699999999876665455556554 677765 3322222221 1111 11111 1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
.+.+-+. + ++-+|+++.. ...+.+..|+++|.+=|+-||+. .++..+.+..+.
T Consensus 59 ---~~~ll~~-~--~~D~V~i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~ 115 (364)
T 3e82_A 59 ---PEAAVQH-P--DVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAE 115 (364)
T ss_dssp ---HHHHHTC-T--TCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred ---HHHHhcC-C--CCCEEEEeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHH
Confidence 1222221 1 4445555443 34566778888998888889874 555544444433
No 159
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=80.52 E-value=20 Score=28.63 Aligned_cols=107 Identities=10% Similarity=0.031 Sum_probs=69.7
Q ss_pred ceEEEEEeCCH-HHHHHHHHHHHhCCceEE-Ee-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 8 QFHVLAVDDSI-IDRKLIERLLKTSSYQVT-AV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 8 ~~~ilivd~~~-~~~~~l~~~l~~~~~~v~-~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
..+++|+++.+ .....+.++....+-.|. .. .+.++....+. ..|++++-.. ...-|..+++.
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~-------------~adv~v~pS~-~E~~~~~~lEA 385 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQA-------------GCDAIIIPSR-FEPCGLTQLYA 385 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHH-------------HCSEEEECCS-CCSSCSHHHHH
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHh-------------cCCEEEECcc-cCCCCHHHHHH
Confidence 46777887765 356677777766553343 22 24444345552 2457776544 34556778888
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhC---------CCceeeCCCChHHHHHHHHHHh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEG---------AEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~g---------a~~yl~kP~~~~~l~~~i~~~~ 137 (187)
+.. .+|+|.... .-..+.+..| ..+++..|.+.++|.+++..++
T Consensus 386 ma~-----G~PvI~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 386 LRY-----GCIPVVART----GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp HHH-----TCEEEEESS----HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred HHC-----CCCEEEeCC----CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 765 778886432 3445555666 7899999999999999999887
No 160
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=80.46 E-value=18 Score=29.01 Aligned_cols=107 Identities=8% Similarity=0.020 Sum_probs=68.4
Q ss_pred ceEEEEEeCCH-HHHHHHHHHHHhCCceEE-Ee-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 8 QFHVLAVDDSI-IDRKLIERLLKTSSYQVT-AV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 8 ~~~ilivd~~~-~~~~~l~~~l~~~~~~v~-~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
..+++|+++.+ .....+.++....+-.+. .. .+.++....+. ..|++++-.. ...-|..+++.
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~-------------~adv~v~pS~-~E~~g~~~lEA 386 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMG-------------GADVILVPSR-FEPCGLTQLYG 386 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHH-------------HCSEEEECCS-CCSSCSHHHHH
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHH-------------hCCEEEECCc-cCCCcHHHHHH
Confidence 45667777654 356667777666553343 22 23333344542 2457776544 34556777887
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhC---------CCceeeCCCChHHHHHHHHHHh
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEG---------AEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~g---------a~~yl~kP~~~~~l~~~i~~~~ 137 (187)
+.. .+|||.... .-..+.+..| ..+++..|.+.++|.+++..++
T Consensus 387 ma~-----G~PvI~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 387 LKY-----GTLPLVRRT----GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp HHH-----TCEEEEESS----HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred HHC-----CCCEEECCC----CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 765 778886432 3445555666 7899999999999999999887
No 161
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=80.41 E-value=6.6 Score=30.75 Aligned_cols=107 Identities=15% Similarity=0.062 Sum_probs=59.5
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhC-CceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTS-SYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~-~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
++++|.||+--..-.......|.+. ++++.. +....+..+.+....+. .-.. .+- +.
T Consensus 4 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~-----------~~~~------~~~----~~ 62 (359)
T 3m2t_A 4 SLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISD-----------IPVL------DNV----PA 62 (359)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCS-----------CCEE------SSH----HH
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCC-----------Cccc------CCH----HH
Confidence 4689999999987765444455544 677764 44444443443221111 1011 121 22
Q ss_pred HHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHh
Q 046192 85 IKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
+-+.. ++-+|+++.. ...+.+..|+++|.+=|+-||+. .++..+.++.+.
T Consensus 63 ll~~~---~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~ 116 (359)
T 3m2t_A 63 MLNQV---PLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAAR 116 (359)
T ss_dssp HHHHS---CCSEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred HhcCC---CCCEEEEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHH
Confidence 22221 4455555543 34566788999999999999964 555555554443
No 162
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=80.36 E-value=6.8 Score=30.22 Aligned_cols=108 Identities=12% Similarity=0.128 Sum_probs=63.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccC------CCCCHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM------PGMTGY 79 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~------~~~~g~ 79 (187)
..+++|+++.+.. ..+........ ..+...-+.++..+.+. ..|++++-... ...-|.
T Consensus 229 ~~~l~i~G~g~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~-------------~ad~~v~ps~~~~~~~~~e~~~~ 294 (394)
T 3okp_A 229 DAQLLIVGSGRYE-STLRRLATDVSQNVKFLGRLEYQDMINTLA-------------AADIFAMPARTRGGGLDVEGLGI 294 (394)
T ss_dssp TCEEEEECCCTTH-HHHHHHTGGGGGGEEEEESCCHHHHHHHHH-------------HCSEEEECCCCBGGGTBCCSSCH
T ss_pred CeEEEEEcCchHH-HHHHHHHhcccCeEEEcCCCCHHHHHHHHH-------------hCCEEEecCccccccccccccCc
Confidence 3566666655432 33333332221 22223334455555552 24577775544 145567
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+++.+.. .+|+|...... ..+.+..| .+++..|-+.+++.+++..++..
T Consensus 295 ~~~Ea~a~-----G~PvI~~~~~~----~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~ 344 (394)
T 3okp_A 295 VYLEAQAC-----GVPVIAGTSGG----APETVTPA-TGLVVEGSDVDKLSELLIELLDD 344 (394)
T ss_dssp HHHHHHHT-----TCCEEECSSTT----GGGGCCTT-TEEECCTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHc-----CCCEEEeCCCC----hHHHHhcC-CceEeCCCCHHHHHHHHHHHHhC
Confidence 77777765 77888643322 22334556 88999999999999999998864
No 163
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=80.34 E-value=10 Score=28.42 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=34.9
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 77 TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+.+.++.+++.. ++|+++...-.+.+.+.+++..||++.+.
T Consensus 165 ~~~~~l~~i~~~~---~iPviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 165 LNPLNLSFIIEQA---KVPVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp SCHHHHHHHHHHC---SSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHhcC---CCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 3577888888743 89999988888899999999999998764
No 164
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=80.17 E-value=3.7 Score=31.16 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=46.8
Q ss_pred ccEEEEeccCCC--CC--------------------HHHHHHHHHhhcCCCCCcEEEEeCC------CChhHHHHHHHhC
Q 046192 64 VNLIITDYCMPG--MT--------------------GYDLLRKIKESASLKDIPVVIMSSE------NIPSRINRCLEEG 115 (187)
Q Consensus 64 ~dlvi~d~~~~~--~~--------------------g~~~~~~l~~~~~~~~~~iI~ls~~------~~~~~~~~a~~~g 115 (187)
.|++.+++-..+ .+ .++.++.+|+. + ++|+++++-. ........+..+|
T Consensus 43 aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~-~--~~Pii~m~y~n~v~~~g~~~f~~~~~~aG 119 (271)
T 1ujp_A 43 ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL-T--EKPLFLMTYLNPVLAWGPERFFGLFKQAG 119 (271)
T ss_dssp CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C--CSCEEEECCHHHHHHHCHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-C--CCCEEEEecCcHHHHhhHHHHHHHHHHcC
Confidence 789998875542 22 34667888876 4 7999997422 2245577789999
Q ss_pred CCceeeCCCChHHHHHHHHHH
Q 046192 116 AEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 116 a~~yl~kP~~~~~l~~~i~~~ 136 (187)
+++++.-....++.......+
T Consensus 120 ~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 120 ATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp CCEEECTTCCGGGCHHHHHHH
T ss_pred CCEEEecCCCHHHHHHHHHHH
Confidence 999998766666554444443
No 165
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=79.77 E-value=14 Score=26.27 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCceEEE----eCCHHHHHHHHhccCcccccccccccccEEEEeccCC----CCCHHHHHHHHHhhcCCCC
Q 046192 22 KLIERLLKTSSYQVTA----VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP----GMTGYDLLRKIKESASLKD 93 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~~----~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~----~~~g~~~~~~l~~~~~~~~ 93 (187)
..+.+.+++.|..+.. ..+..+.++.+.. ...|.|.++.... ...+.+.++.+++..+ +
T Consensus 93 ~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~-----------~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~~--~ 159 (211)
T 3f4w_A 93 QSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE-----------AGADMLAVHTGTDQQAAGRKPIDDLITMLKVRR--K 159 (211)
T ss_dssp HHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH-----------HTCCEEEEECCHHHHHTTCCSHHHHHHHHHHCS--S
T ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH-----------cCCCEEEEcCCCcccccCCCCHHHHHHHHHHcC--C
Confidence 4555555666765543 1333333343322 2355776652110 1135778888888754 7
Q ss_pred CcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 94 IPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 94 ~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+|+++-..- +.+.+..+.+.||+..+.
T Consensus 160 ~~i~~~gGI-~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 160 ARIAVAGGI-SSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp CEEEEESSC-CTTTHHHHHTTCCSEEEE
T ss_pred CcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 888766655 478888999999998654
No 166
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=79.38 E-value=8.1 Score=29.81 Aligned_cols=55 Identities=9% Similarity=0.206 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
-+.++..|+..| ..||.+-.. +.+.+.+|+++|++-..+..++++++.++++.+.
T Consensus 195 ~~Av~~ar~~~p--~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~~ 249 (300)
T 3l0g_A 195 TLAIQRLRKNLK--NEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIVN 249 (300)
T ss_dssp HHHHHHHHHHSS--SCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC--CCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhc
Confidence 356777887766 678887665 4789999999999999999999999999987664
No 167
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=78.86 E-value=22 Score=28.65 Aligned_cols=100 Identities=12% Similarity=0.161 Sum_probs=64.4
Q ss_pred HHHHHHHHHhCCc--eEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcE
Q 046192 21 RKLIERLLKTSSY--QVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 21 ~~~l~~~l~~~~~--~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 96 (187)
...+.+..++.|. .|.. .-+.++..+.+... ....|++++-.. ...-|..+++.+.. .+||
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a---------~~~~dv~v~pS~-~Eg~~~~~lEAma~-----G~Pv 385 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYL---------ASKGSVFALTSF-YEPFGLAPVEAMAS-----GLPA 385 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHH---------HHTTCEEEECCS-CBCCCSHHHHHHHT-----TCCE
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhc---------CcCCCEEEECcc-cCCCCcHHHHHHHc-----CCCE
Confidence 6677777776553 2333 33456666666321 001167776543 34456677777765 7788
Q ss_pred EEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 97 VIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
|.... ....+.+..|..+++..|.+.+++.+++..++..
T Consensus 386 I~s~~----~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~~ 424 (499)
T 2r60_A 386 VVTRN----GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFES 424 (499)
T ss_dssp EEESS----BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHSC
T ss_pred EEecC----CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHhC
Confidence 85432 3445566777889999999999999999888764
No 168
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=78.74 E-value=5.8 Score=30.40 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=48.7
Q ss_pred ccEEEE-eccCCCCCH-HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 64 VNLIIT-DYCMPGMTG-YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 64 ~dlvi~-d~~~~~~~g-~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.|.+++ |-+..-..| -+.++..|+..| ..||.+-.. +.+...+|+++|++...+..++++++.++++.+.
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~~~--~~~IeVEv~--tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~~ 240 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKLDS--NKVVEVEVT--NLDELNQAIAAKADIVMLDNFSGEDIDIAVSIAR 240 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHHCT--TSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhhCC--CCcEEEEeC--CHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhhc
Confidence 455555 433322222 357777787655 678877554 5688999999999999999999999998887664
No 169
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=77.85 E-value=11 Score=27.94 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
..++++.+++.. ++||++-..-.+.+.+.+++..||+.++.=
T Consensus 189 ~~~~i~~v~~~~---~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVT---NKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhc---CCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 456888888764 789998777777999999999999998753
No 170
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=77.54 E-value=13 Score=27.29 Aligned_cols=89 Identities=8% Similarity=-0.048 Sum_probs=52.2
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY- 79 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~- 79 (187)
|.|......+++|-....-....+...|.+.|+.|..+....+.++.+.... ...+..+..++.+.+..
T Consensus 1 M~m~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~ 70 (255)
T 4eso_A 1 MVMGNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF----------GPRVHALRSDIADLNEIA 70 (255)
T ss_dssp ---CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------GGGEEEEECCTTCHHHHH
T ss_pred CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCcceEEEccCCCHHHHH
Confidence 5454445568899999988999999999888998887544444444332110 12255555555554443
Q ss_pred HHHHHHHhhcCCCCCcEEEEeC
Q 046192 80 DLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
.+++.+.+... .+-+++..+
T Consensus 71 ~~~~~~~~~~g--~id~lv~nA 90 (255)
T 4eso_A 71 VLGAAAGQTLG--AIDLLHINA 90 (255)
T ss_dssp HHHHHHHHHHS--SEEEEEECC
T ss_pred HHHHHHHHHhC--CCCEEEECC
Confidence 35666655543 455665543
No 171
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=76.77 E-value=23 Score=27.16 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=30.5
Q ss_pred CCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 93 DIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 93 ~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+|+|+........ +..+.| .+++..| +.++|.+++..++..
T Consensus 301 G~PvI~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 301 GKPVLVMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLKD 342 (384)
T ss_dssp TCCEEEESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHHC
T ss_pred CCCEEEccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHhC
Confidence 78998765422222 235667 8899988 999999999998864
No 172
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=76.72 E-value=17 Score=26.35 Aligned_cols=56 Identities=18% Similarity=0.289 Sum_probs=39.8
Q ss_pred cccEEEEeccCCCC-------CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGM-------TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~-------~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..|.|+++...|+. .+++.++.+++..+ +.||++...- +.+.+..+...|++.++.
T Consensus 138 ~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~--~~pi~v~GGI-~~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 138 PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP--SLDIEVDGGL-GPSTIDVAASAGANCIVA 200 (228)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT--TSEEEEESSC-STTTHHHHHHHTCCEEEE
T ss_pred CCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcC--CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 47899998877653 34566777777654 6787755554 457788888999998654
No 173
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=76.60 E-value=22 Score=26.88 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccC-CCC-CHHHHHHHHHhhcCCCCCcEE
Q 046192 21 RKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM-PGM-TGYDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~-~~~-~g~~~~~~l~~~~~~~~~~iI 97 (187)
...+....+..|..+.. +.+.+++...+. . .+|+|=++-.- ... ..++....+.+..| .+.|+|
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~-~-----------ga~iIGinnr~l~t~~~dl~~~~~L~~~ip-~~~~vI 224 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALK-L-----------SSRLLGVNNRNLRSFEVNLAVSERLAKMAP-SDRLLV 224 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTT-S-----------CCSEEEEECBCTTTCCBCTHHHHHHHHHSC-TTSEEE
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHh-c-----------CCCEEEECCCCCccCCCChHHHHHHHHhCC-CCCcEE
Confidence 34444555667876654 788888765552 2 35577666322 211 12455666665544 368888
Q ss_pred EEeCCCChhHHHHHHHhCCCceee-----CCCChHHHHHHHHHHhhh
Q 046192 98 IMSSENIPSRINRCLEEGAEEFFL-----KPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 98 ~ls~~~~~~~~~~a~~~ga~~yl~-----kP~~~~~l~~~i~~~~~~ 139 (187)
.-+.-.+.+.+..+.+.|+++++. ++-++.. +++.+..+
T Consensus 225 aesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~---~~~~l~~g 268 (272)
T 3tsm_A 225 GESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAA---ATRALLTG 268 (272)
T ss_dssp EESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHH---HHHHHHHC
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHH---HHHHHHhc
Confidence 888888999999999999999876 4545433 44455444
No 174
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=76.49 E-value=8.8 Score=29.84 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=45.8
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.|++++-.. ...-|..+++.+.. .+|+|........ +.+..|-.+++..|-+.+++.+++..++..
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma~-----G~PvI~~~~~~~~----e~v~~~~~g~~~~~~d~~~la~~i~~l~~~ 350 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMAC-----GVPCIGTRVGGIP----EVIQHGDTGYLCEVGDTTGVADQAIQLLKD 350 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHHT-----TCCEEEECCTTST----TTCCBTTTEEEECTTCHHHHHHHHHHHHHC
T ss_pred CCEEEeccc-cCCCchHHHHHHhc-----CCCEEEecCCChH----HHhhcCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 567776543 34556777777765 7788865443322 233456688999999999999999988864
No 175
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=76.46 E-value=13 Score=24.28 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=57.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCc-----c---ccccc--ccccccEEEEeccCCCCC
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNE-----D---EQTNS--QVIQVNLIITDYCMPGMT 77 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~-----~---~~~~~--~~~~~dlvi~d~~~~~~~ 77 (187)
+.+|+|++--. +...+...|...|+.|..+....+..+.+..... | +.... .-...|+|++-.. ....
T Consensus 6 ~~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~-~~~~ 83 (141)
T 3llv_A 6 RYEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS-DDEF 83 (141)
T ss_dssp CCSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS-CHHH
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC-CHHH
Confidence 35788888855 6677788887788888876555555444422110 0 00000 1124677776554 1112
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
-..++..+++.+ ...++.... +........+.|++. +..|
T Consensus 84 n~~~~~~a~~~~---~~~iia~~~--~~~~~~~l~~~G~~~-vi~p 123 (141)
T 3llv_A 84 NLKILKALRSVS---DVYAIVRVS--SPKKKEEFEEAGANL-VVLV 123 (141)
T ss_dssp HHHHHHHHHHHC---CCCEEEEES--CGGGHHHHHHTTCSE-EEEH
T ss_pred HHHHHHHHHHhC---CceEEEEEc--ChhHHHHHHHcCCCE-EECH
Confidence 233455555543 344554443 345566667788764 4434
No 176
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=76.35 E-value=3.2 Score=29.65 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhhcCCCCCcEEE--EeCCCChhHHHHHHHhCCCceeeCCCCh-HHHHHHHHHH
Q 046192 77 TGYDLLRKIKESASLKDIPVVI--MSSENIPSRINRCLEEGAEEFFLKPVQL-ADVNKLKPHL 136 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~--ls~~~~~~~~~~a~~~ga~~yl~kP~~~-~~l~~~i~~~ 136 (187)
+|.++++.+++..+ +.|+++ ....-...++..+.+.||+.....+... +.+..+++.+
T Consensus 39 ~g~~~i~~l~~~~~--~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~ 99 (207)
T 3ajx_A 39 EGLSVITAVKKAHP--DKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAA 99 (207)
T ss_dssp HCTHHHHHHHHHST--TSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHH
T ss_pred hCHHHHHHHHHhCC--CCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHH
Confidence 46678888888754 667774 2221123447788899998887666554 4444444333
No 177
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=76.18 E-value=18 Score=25.57 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=50.1
Q ss_pred eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCC
Q 046192 38 VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAE 117 (187)
Q Consensus 38 ~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~ 117 (187)
..+.+++.+.+.... ...++++-+....+ ++.+.++.+|+..+ .-.+|..+...+.+....+.+.||+
T Consensus 18 ~~~~~~~~~~~~~~~--------~~G~~~iev~~~~~--~~~~~i~~ir~~~~--~~~~ig~~~v~~~~~~~~a~~~Gad 85 (205)
T 1wa3_A 18 ANSVEEAKEKALAVF--------EGGVHLIEITFTVP--DADTVIKELSFLKE--KGAIIGAGTVTSVEQCRKAVESGAE 85 (205)
T ss_dssp CSSHHHHHHHHHHHH--------HTTCCEEEEETTST--THHHHHHHTHHHHH--TTCEEEEESCCSHHHHHHHHHHTCS
T ss_pred cCCHHHHHHHHHHHH--------HCCCCEEEEeCCCh--hHHHHHHHHHHHCC--CCcEEEecccCCHHHHHHHHHcCCC
Confidence 455666655554332 22355665555543 56677888888643 1223445444577888999999998
Q ss_pred ceeeCCCChHHHHHHHH
Q 046192 118 EFFLKPVQLADVNKLKP 134 (187)
Q Consensus 118 ~yl~kP~~~~~l~~~i~ 134 (187)
.. .-|....++.+..+
T Consensus 86 ~i-v~~~~~~~~~~~~~ 101 (205)
T 1wa3_A 86 FI-VSPHLDEEISQFCK 101 (205)
T ss_dssp EE-ECSSCCHHHHHHHH
T ss_pred EE-EcCCCCHHHHHHHH
Confidence 66 66665555555443
No 178
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=75.70 E-value=9.1 Score=29.81 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=56.0
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhC-CceEEE-eC-CHHHHHHHHhccCcccccccccccccEEE-EeccCCCCCHH
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTS-SYQVTA-VD-SGNKALEFLGLLNEDEQTNSQVIQVNLII-TDYCMPGMTGY 79 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~-~~~v~~-~~-~~~~a~~~l~~~~~~~~~~~~~~~~dlvi-~d~~~~~~~g~ 79 (187)
+++.++||.||+--..-...+...|... +++++. +. +.+.+.+.... +.+-. -|
T Consensus 23 ~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~-------------~g~~~~~~--------- 80 (350)
T 3rc1_A 23 ANANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER-------------FGGEPVEG--------- 80 (350)
T ss_dssp ---CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH-------------HCSEEEES---------
T ss_pred CCCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH-------------cCCCCcCC---------
Confidence 3445689999999887763344444444 677764 33 33333322211 11111 22
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHh
Q 046192 80 DLLRKIKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
.+.+-+. + ++-+|+++.. ...+.+..++++|.+=++-||+. .++..+.++.+.
T Consensus 81 --~~~ll~~-~--~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~ 137 (350)
T 3rc1_A 81 --YPALLER-D--DVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVAR 137 (350)
T ss_dssp --HHHHHTC-T--TCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHH
T ss_pred --HHHHhcC-C--CCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 1222221 1 4445555443 34566778888998888889974 455555444433
No 179
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=74.75 E-value=13 Score=29.03 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
-+.++..++..| ..||.+.... .+.+.+|+++|++...+..++++++.++++.+
T Consensus 219 ~~Av~~ar~~~p--~~kIeVEVdt--ldea~eAl~aGaD~I~LDn~~~~~l~~av~~l 272 (320)
T 3paj_A 219 RQAISTAKQLNP--GKPVEVETET--LAELEEAISAGADIIMLDNFSLEMMREAVKIN 272 (320)
T ss_dssp HHHHHHHHHHST--TSCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCeEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 457777888776 5688776654 57888999999998889999999998888764
No 180
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=74.04 E-value=0.15 Score=32.09 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=20.6
Q ss_pred ccchhhhhhcccccccCCCCCCCccC
Q 046192 161 DSADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 161 ~~~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
.....++.+|.+++.+..+|+|++||
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G~s~~eI 50 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKGFTNQEI 50 (90)
T ss_dssp ----CCCHHHHHHHHHHHTTCCHHHH
T ss_pred ccccCCCHHHHHHHHHHHcCCCHHHH
Confidence 34456889999999999999999987
No 181
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=73.69 E-value=22 Score=25.47 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=49.4
Q ss_pred CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-------CCHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 046192 32 SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-------MTGYDLLRKIKESASLKDIPVVIMSSEN 103 (187)
Q Consensus 32 ~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-------~~g~~~~~~l~~~~~~~~~~iI~ls~~~ 103 (187)
+..+. .+.+..++.+... ...|.|+++...+. ..+++.++.+++.. ++|+++...-
T Consensus 110 ~~~ig~sv~t~~~~~~a~~------------~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~---~~pvia~GGI- 173 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEK------------EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI---SIPVIAIGGM- 173 (221)
T ss_dssp TCEEEEEECSHHHHHHHHH------------TTCSEEEEECCC----------CHHHHHHHHHHHC---CSCEEEESSC-
T ss_pred CCEEEEEcCCHHHHHHHHh------------CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-
Confidence 44333 3677777655542 23678888764332 23677888887653 7898888776
Q ss_pred ChhHHHHHHHhCCCceee
Q 046192 104 IPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 104 ~~~~~~~a~~~ga~~yl~ 121 (187)
+.+.+.+++..|++++..
T Consensus 174 ~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 174 TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp CGGGHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 789999999999997643
No 182
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=73.60 E-value=29 Score=26.79 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=40.2
Q ss_pred ccEEEEeccCC-----CCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 64 VNLIITDYCMP-----GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 64 ~dlvi~d~~~~-----~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
+|.|+++-.-. ....+++++.+++.. ++|||....-.+.+.+.+++..||++.
T Consensus 131 aD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~---~iPViaaGGI~~~~~~~~al~~GAdgV 188 (332)
T 2z6i_A 131 ADAVIAEGMEAGGHIGKLTTMTLVRQVATAI---SIPVIAAGGIADGEGAAAGFMLGAEAV 188 (332)
T ss_dssp CSCEEEECTTSSEECCSSCHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred CCEEEEECCCCCCCCCCccHHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 67888864211 134578888888754 789998888888999999999999875
No 183
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=73.29 E-value=20 Score=26.33 Aligned_cols=88 Identities=6% Similarity=0.010 Sum_probs=51.0
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHH----HHHHHhccCcccccccccccccEEEEeccCCC
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAV-DSGNK----ALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG 75 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~-~~~~~----a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~ 75 (187)
|+|+.....++||-....-....+...|.+.|+.|..+ ....+ ..+.+... ...+..+..++.+
T Consensus 1 M~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dv~~ 69 (259)
T 3edm_A 1 MSLQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL-----------GRSALAIKADLTN 69 (259)
T ss_dssp ---CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT-----------TSCCEEEECCTTC
T ss_pred CCccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-----------CCceEEEEcCCCC
Confidence 66655666789999999888899999998889988765 32222 22223211 1224444444555
Q ss_pred CCHH-HHHHHHHhhcCCCCCcEEEEeC
Q 046192 76 MTGY-DLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 76 ~~g~-~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
.+.. .+++.+.+... .+-+++..+
T Consensus 70 ~~~v~~~~~~~~~~~g--~id~lv~nA 94 (259)
T 3edm_A 70 AAEVEAAISAAADKFG--EIHGLVHVA 94 (259)
T ss_dssp HHHHHHHHHHHHHHHC--SEEEEEECC
T ss_pred HHHHHHHHHHHHHHhC--CCCEEEECC
Confidence 4433 46666666543 555665443
No 184
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=73.19 E-value=12 Score=29.35 Aligned_cols=107 Identities=13% Similarity=0.124 Sum_probs=58.5
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
.++||.||+--......+...+...+++++. +....+..+.+....+. + -+.-| .+.+
T Consensus 25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~---------~-~~~~~-----------~~~l 83 (361)
T 3u3x_A 25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYAD---------A-RRIAT-----------AEEI 83 (361)
T ss_dssp -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSS---------C-CEESC-----------HHHH
T ss_pred cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCC---------C-cccCC-----------HHHH
Confidence 3689999997655544555555556787765 44333333333211110 0 01111 1222
Q ss_pred HhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHHh
Q 046192 86 KESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHLM 137 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~~ 137 (187)
-+. + ++-+|+++.. ...+.+..|+++|-+=|+-||+ +.++..+.++.+.
T Consensus 84 l~~-~--~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 136 (361)
T 3u3x_A 84 LED-E--NIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQA 136 (361)
T ss_dssp HTC-T--TCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred hcC-C--CCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 221 1 4555555543 3456678899999999999997 4555555554443
No 185
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=72.29 E-value=26 Score=25.58 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
+++.++.+++.. ++|+++-..-...+.+.+++..||+.++.=
T Consensus 179 ~~~~i~~l~~~~---~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 179 AYDLLRRAKRIC---RNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhc---CCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 355778888754 688887777766688989999999998764
No 186
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=72.12 E-value=31 Score=26.49 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=51.9
Q ss_pred HHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-------CCHHHHHHHHHhhcCCCCCcEE
Q 046192 26 RLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-------MTGYDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 26 ~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-------~~g~~~~~~l~~~~~~~~~~iI 97 (187)
+.++..|..+.. +.+.+++..... ..+|.++++-.-++ ...+++++.+++.. ++||+
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~------------~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~---~iPvi 176 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAER------------LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL---RVPII 176 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH------------TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC---CSCEE
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHH------------cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc---CCCEE
Confidence 334444554443 566665554432 23678888643222 14667888887643 78999
Q ss_pred EEeCCCChhHHHHHHHhCCCcee
Q 046192 98 IMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 98 ~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
+-..-.+.+.+.+++..||++..
T Consensus 177 aaGGI~~~~~v~~al~~GAdgV~ 199 (328)
T 2gjl_A 177 ASGGFADGRGLVAALALGADAIN 199 (328)
T ss_dssp EESSCCSHHHHHHHHHHTCSEEE
T ss_pred EECCCCCHHHHHHHHHcCCCEEE
Confidence 88887788899999999998754
No 187
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=71.99 E-value=30 Score=26.28 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=61.1
Q ss_pred HHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeC
Q 046192 24 IERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 24 l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
+++.|.... +.++.-.+..+.++.+ ....+|.|++|..-...+--.+...++.... ...++++=+.
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a-----------~~~GaD~v~lDlEh~~~~~~~~~~~l~a~~~-~~~~~~VRv~ 97 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSSYSAELL-----------AGAGFDWLLIDGEHAPNNVQTVLTQLQAIAP-YPSQPVVRPS 97 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHH-----------HTSCCSEEEEESSSSSCCHHHHHHHHHHHTT-SSSEEEEECS
T ss_pred HHHHHHCCCcEEEEEEECCCHHHHHHH-----------HhCCCCEEEEeCCCccchHHHHHHHHHHHHh-cCCCEEEEEC
Confidence 555554322 2333333445555666 3445789999997765555556555554432 2455655555
Q ss_pred CCChhHHHHHHHhCCCceee-CCCChHHHHHHHHHH
Q 046192 102 ENIPSRINRCLEEGAEEFFL-KPVQLADVNKLKPHL 136 (187)
Q Consensus 102 ~~~~~~~~~a~~~ga~~yl~-kP~~~~~l~~~i~~~ 136 (187)
..+...+..+++.|++..+. |--+.+++..+++.+
T Consensus 98 ~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 98 WNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp SSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 56777899999999987644 444577766655543
No 188
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=71.52 E-value=11 Score=31.15 Aligned_cols=56 Identities=9% Similarity=0.155 Sum_probs=43.6
Q ss_pred cccEEEEeccCCCCC-HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMT-GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~-g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|+|.+|...+... ..++++++++..+ ++||++ ....+.+.+..+.++||+....
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p--~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYP--HLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCT--TCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCC--CceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 477999998876543 4578999999876 788876 3345678899999999998764
No 189
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=70.94 E-value=21 Score=26.07 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=38.4
Q ss_pred EEEEeccCCCCC---HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 66 LIITDYCMPGMT---GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 66 lvi~d~~~~~~~---g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+.+.|....+.. .++.++.+++.. ++|+++...-.+.+.+..++..||+..+.
T Consensus 48 i~v~d~~~~~~~~~~~~~~i~~i~~~~---~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 48 LVFLDISATHEERAILLDVVARVAERV---FIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp EEEEECCSSTTCHHHHHHHHHHHHTTC---CSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred EEEEcCCccccCccccHHHHHHHHHhC---CCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 455566543322 234566776643 79999988888899999999999998765
No 190
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=70.81 E-value=29 Score=26.76 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=58.3
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhC--CceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHH
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTS--SYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYD 80 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~--~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~ 80 (187)
.+..++||.||+--..........+... +++++. +....+..+.+.... ...-+.- +
T Consensus 14 ~~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~----------~~~~~~~-------~--- 73 (340)
T 1zh8_A 14 KPLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV----------GNPAVFD-------S--- 73 (340)
T ss_dssp --CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH----------SSCEEES-------C---
T ss_pred CCCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHh----------CCCcccC-------C---
Confidence 4456799999998844444344445443 576654 443333333332110 0001111 1
Q ss_pred HHHHHHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHHh
Q 046192 81 LLRKIKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHLM 137 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~~ 137 (187)
.+.+-+. + ++-+|+++.. ...+.+..|+++|.+=|+-||+ +.++..+.++.+.
T Consensus 74 -~~~ll~~-~--~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 130 (340)
T 1zh8_A 74 -YEELLES-G--LVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSE 130 (340)
T ss_dssp -HHHHHHS-S--CCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred -HHHHhcC-C--CCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 2222221 1 4455555543 3457788899999999999997 5666555554443
No 191
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=70.67 E-value=34 Score=26.36 Aligned_cols=80 Identities=24% Similarity=0.265 Sum_probs=53.3
Q ss_pred HHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-----CCHHHHHHHHHhhcCCCCCcEEEE
Q 046192 26 RLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-----MTGYDLLRKIKESASLKDIPVVIM 99 (187)
Q Consensus 26 ~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-----~~g~~~~~~l~~~~~~~~~~iI~l 99 (187)
+.++..|..+.. +.+.+++..... ..+|.|+++-.-.+ ...++++..+++.. ++|||+-
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~------------~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~---~iPviaa 182 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVER------------AGADAVIAEGMESGGHIGEVTTFVLVNKVSRSV---NIPVIAA 182 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH------------TTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC---SSCEEEE
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHH------------cCCCEEEEECCCCCccCCCccHHHHHHHHHHHc---CCCEEEE
Confidence 334445554543 566666654432 23667888643222 24678888887754 7899988
Q ss_pred eCCCChhHHHHHHHhCCCcee
Q 046192 100 SSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 100 s~~~~~~~~~~a~~~ga~~yl 120 (187)
..-.+.+.+.+++..||++..
T Consensus 183 GGI~~~~dv~~al~~GA~gV~ 203 (326)
T 3bo9_A 183 GGIADGRGMAAAFALGAEAVQ 203 (326)
T ss_dssp SSCCSHHHHHHHHHHTCSEEE
T ss_pred CCCCCHHHHHHHHHhCCCEEE
Confidence 888889999999999999854
No 192
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=70.66 E-value=31 Score=25.79 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
.++++.+|+.. ++||++=..-.+.+.+.+++..|||..+.=
T Consensus 194 ~~~i~~lr~~~---~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYH---AAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTT---CCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhcc---CCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 57888998854 688776555556888999899999998764
No 193
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=70.25 E-value=31 Score=26.75 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=65.6
Q ss_pred ceEEEEEeCCHH-----HHHHHHHHHHhCCce---------EEE--eCCHHHHHHHHhccCcccccccccccccEEEEec
Q 046192 8 QFHVLAVDDSII-----DRKLIERLLKTSSYQ---------VTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY 71 (187)
Q Consensus 8 ~~~ilivd~~~~-----~~~~l~~~l~~~~~~---------v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~ 71 (187)
..+++|+++.+. ....+.+..+..|.. +.. .-+.++..+.+. ..|++++-.
T Consensus 215 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~-------------~adv~v~pS 281 (413)
T 3oy2_A 215 DAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYN-------------ACDVIVNCS 281 (413)
T ss_dssp TCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHH-------------HCSEEEECC
T ss_pred CcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHH-------------hCCEEEeCC
Confidence 356666665543 235555555555532 222 223455555552 245777743
Q ss_pred cCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCC---------------ce--eeCCCChHHHHHHHH
Q 046192 72 CMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAE---------------EF--FLKPVQLADVNKLKP 134 (187)
Q Consensus 72 ~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~---------------~y--l~kP~~~~~l~~~i~ 134 (187)
. ...-|..+++.+.. .+|||... ..-..+.+..|.. ++ +..|.+.+++.+++
T Consensus 282 ~-~E~~~~~~lEAma~-----G~PvI~s~----~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i- 350 (413)
T 3oy2_A 282 S-GEGFGLCSAEGAVL-----GKPLIISA----VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF- 350 (413)
T ss_dssp S-CCSSCHHHHHHHTT-----TCCEEEEC----CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-
T ss_pred C-cCCCCcHHHHHHHc-----CCCEEEcC----CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-
Confidence 3 34557777777654 77888533 2344555666666 88 99999999999999
Q ss_pred HHhhh
Q 046192 135 HLMKG 139 (187)
Q Consensus 135 ~~~~~ 139 (187)
.++..
T Consensus 351 ~l~~~ 355 (413)
T 3oy2_A 351 TFFKD 355 (413)
T ss_dssp HHTTS
T ss_pred HHhcC
Confidence 88865
No 194
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=70.09 E-value=11 Score=28.70 Aligned_cols=69 Identities=14% Similarity=0.047 Sum_probs=46.0
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CCHHHHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MTGYDLLRKIK 86 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~ 86 (187)
-++.++|-++.....|++.++..+ .+. ...++..++..+.. ...++|+|++|---.. .+.-.+++.+.
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~-~~~V~~~D~~~~L~~l~~---------~~~~fdLVfiDPPYe~k~~~~~vl~~L~ 183 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNK-KVYVNHTDGVSKLNALLP---------PPEKRGLIFIDPSYERKEEYKEIPYAIK 183 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTS-CEEEECSCHHHHHHHHCS---------CTTSCEEEEECCCCCSTTHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCC-cEEEEeCcHHHHHHHhcC---------CCCCccEEEECCCCCCCcHHHHHHHHHH
Confidence 588999999999999998886543 233 35677777766522 1235899999975542 34444555554
Q ss_pred h
Q 046192 87 E 87 (187)
Q Consensus 87 ~ 87 (187)
+
T Consensus 184 ~ 184 (283)
T 2oo3_A 184 N 184 (283)
T ss_dssp H
T ss_pred H
Confidence 4
No 195
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=69.82 E-value=28 Score=25.00 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=42.1
Q ss_pred ceEEEEEe------CCHHHHHHHHHHHHhCCceEEEe----CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC
Q 046192 8 QFHVLAVD------DSIIDRKLIERLLKTSSYQVTAV----DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT 77 (187)
Q Consensus 8 ~~~ilivd------~~~~~~~~l~~~l~~~~~~v~~~----~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~ 77 (187)
..+|++|+ +.......+.+.|++.|+.+... .+.++..+.+. ..|.|++ |+.+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~-------------~ad~I~l----~GG~ 89 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR-------------KNDFIYV----TGGN 89 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH-------------HSSEEEE----CCSC
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH-------------hCCEEEE----CCCC
Confidence 36888886 33456678889999999988877 46666666663 2457775 5666
Q ss_pred HHHHHHHHHh
Q 046192 78 GYDLLRKIKE 87 (187)
Q Consensus 78 g~~~~~~l~~ 87 (187)
-..+.+.+++
T Consensus 90 ~~~l~~~L~~ 99 (206)
T 3l4e_A 90 TFFLLQELKR 99 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 196
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=69.68 E-value=21 Score=23.63 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=67.4
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
..++++++++.+. ...+.+.....+..+.. .-+.++..+.+. ..|++++-.. ...-|..+++.+
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~-------------~adv~v~ps~-~e~~~~~~~Eam 95 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILK-------------TCTLYVHAAN-VESEAIACLEAI 95 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHT-------------TCSEEEECCC-SCCCCHHHHHHH
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHH-------------hCCEEEECCc-ccCccHHHHHHH
Confidence 4678888887654 46677777776654443 223456666662 3467776544 445577788877
Q ss_pred HhhcCCCCC-cEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 86 KESASLKDI-PVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 86 ~~~~~~~~~-~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.. .+ |||..+........ ... ..++..|.+.+++.+.+..++..
T Consensus 96 a~-----G~vPvi~~~~~~~~~~~---~~~--~~~~~~~~~~~~l~~~i~~l~~~ 140 (166)
T 3qhp_A 96 SV-----GIVPVIANSPLSATRQF---ALD--ERSLFEPNNAKDLSAKIDWWLEN 140 (166)
T ss_dssp HT-----TCCEEEECCTTCGGGGG---CSS--GGGEECTTCHHHHHHHHHHHHHC
T ss_pred hc-----CCCcEEeeCCCCchhhh---ccC--CceEEcCCCHHHHHHHHHHHHhC
Confidence 64 65 88873332222111 112 23478888999999999998864
No 197
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=69.65 E-value=37 Score=26.35 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=55.8
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhC-CceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTS-SYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~-~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
.+++|.||+--..-...+. .+... ++++.. +....+..+.... + .+-.. .+-- +.
T Consensus 4 ~~~~vgiiG~G~~g~~~~~-~l~~~~~~~l~av~d~~~~~~~~a~~--~-----------g~~~~------~~~~---~l 60 (359)
T 3e18_A 4 KKYQLVIVGYGGMGSYHVT-LASAADNLEVHGVFDILAEKREAAAQ--K-----------GLKIY------ESYE---AV 60 (359)
T ss_dssp CCEEEEEECCSHHHHHHHH-HHHTSTTEEEEEEECSSHHHHHHHHT--T-----------TCCBC------SCHH---HH
T ss_pred CcCcEEEECcCHHHHHHHH-HHHhCCCcEEEEEEcCCHHHHHHHHh--c-----------CCcee------CCHH---HH
Confidence 4689999999877665444 44444 677765 4433333333311 1 11000 1111 22
Q ss_pred HHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHH
Q 046192 85 IKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHL 136 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~ 136 (187)
+.. + ++-+|+++.. ...+.+..|+++|.+=++-||+. .++..+.++.+
T Consensus 61 l~~--~--~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a 112 (359)
T 3e18_A 61 LAD--E--KVDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVA 112 (359)
T ss_dssp HHC--T--TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHH
T ss_pred hcC--C--CCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHH
Confidence 222 1 4445555443 34566788889998888899974 44555444433
No 198
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=69.62 E-value=13 Score=28.54 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
-+.++..++..| ..||.+-.. +.+.+.+|+++|++...+..++++++.++++.+
T Consensus 197 ~~Av~~~r~~~p--~~~ieVEvd--tlde~~eAl~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 197 GEALDAAFALNA--EVPVQIEVE--TLDQLRTALAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp HHHHHHHHHHC----CCCEEEES--SHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 356778888776 678777655 457789999999999999999999999988876
No 199
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=69.23 E-value=19 Score=26.36 Aligned_cols=55 Identities=11% Similarity=0.185 Sum_probs=39.7
Q ss_pred ccEEEEeccCCCCCH-------HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 64 VNLIITDYCMPGMTG-------YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g-------~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+|.|++-.--|+..| ++-++++|+..+ +.+|. +...-+.+.+..+.++||+.++.
T Consensus 139 ~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~--~~~I~-VdGGI~~~ti~~~~~aGAd~~V~ 200 (227)
T 1tqx_A 139 INTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK--NLNIQ-VDGGLNIETTEISASHGANIIVA 200 (227)
T ss_dssp CSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT--TCEEE-EESSCCHHHHHHHHHHTCCEEEE
T ss_pred cCEEEEeeeccCCCCcccchHHHHHHHHHHHhcc--CCeEE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 678888877776544 566677777653 55544 55566788999999999997654
No 200
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=69.20 E-value=17 Score=26.93 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=38.5
Q ss_pred EEEEeccCCC---CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 66 LIITDYCMPG---MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 66 lvi~d~~~~~---~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+.+.|....+ ..-++.++.+++.. ++|+++...-.+.+.+..++..||+..++
T Consensus 47 i~v~d~~~~~~~~g~~~~~i~~i~~~~---~iPvi~~ggi~~~~~i~~~~~~Gad~v~l 102 (266)
T 2w6r_A 47 ILLTSIDRDGTKSGYDTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLAGADKALA 102 (266)
T ss_dssp EEEEETTTSSCSSCCCHHHHHHHGGGC---CSCEEEESCCCSTHHHHHHHHHTCSEEEC
T ss_pred EEEEecCcccCCCcccHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCcHhhh
Confidence 4455654332 12267888888753 78999887777788899999999998765
No 201
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=69.12 E-value=9.3 Score=29.07 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=48.7
Q ss_pred CceEEEEEeCC-----HHHHHHHHHHHHhCC-ceEEEeCCHH---HHHHHHhccCcccccccccccccEEEEeccCCCCC
Q 046192 7 SQFHVLAVDDS-----IIDRKLIERLLKTSS-YQVTAVDSGN---KALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT 77 (187)
Q Consensus 7 ~~~~ilivd~~-----~~~~~~l~~~l~~~~-~~v~~~~~~~---~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~ 77 (187)
.+++|||+... +.....|..+|++.| |+|....+.. +. ..+ .+ .=..+|+||++......+
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~-~~f---~~------~L~~~D~vV~~~~~~~l~ 72 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDM-SGF---VL------DFSPYQLVVLDYNGDSWP 72 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCC-TTC---CC------CCTTCSEEEECCCSSCCC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccch-hHH---hh------hhhcCCEEEEeCCCCcCC
Confidence 56899999762 556678999998888 9998875531 00 011 11 123589999887544433
Q ss_pred HH--H-HHHHHHhhcCCCCCcEEEEeCC
Q 046192 78 GY--D-LLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 78 g~--~-~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
.- + +.+.++. ..++|.+-+.
T Consensus 73 ~~~~~~l~~yV~~-----Ggglv~~H~a 95 (281)
T 4e5v_A 73 EETNRRFLEYVQN-----GGGVVIYHAA 95 (281)
T ss_dssp HHHHHHHHHHHHT-----TCEEEEEGGG
T ss_pred HHHHHHHHHHHHc-----CCCEEEEecc
Confidence 22 1 3333333 5678887553
No 202
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=68.99 E-value=36 Score=25.91 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=40.8
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.|++++.. |.-+++.+.. .+|+|....... ..+..+.| .+++..| +.++|.+++..++..
T Consensus 283 ad~~v~~s------g~~~lEA~a~-----G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPSL-----GVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLSD 342 (375)
T ss_dssp CSEEEECC------HHHHHHHHHH-----TCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred CcEEEECC------CChHHHHHhc-----CCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHhC
Confidence 56777653 4446666654 788987633122 23446677 8888877 999999999998864
No 203
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=68.65 E-value=33 Score=25.43 Aligned_cols=101 Identities=13% Similarity=0.055 Sum_probs=60.6
Q ss_pred HHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeC
Q 046192 24 IERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 24 l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
+++.|.... +..+..-+..+.++.+ ....+|.|++|..-...+--++...++.... ...++++=+.
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a-----------~~~gaD~v~lDlEd~p~~~~~a~~~~~~~~~-~~~~~~VRv~ 77 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVL-----------GLAGFDWLVLDGEHAPNDISTFIPQLMALKG-SASAPVVRVP 77 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHH-----------TTSCCSEEEEESSSSSCCHHHHHHHHHHTTT-CSSEEEEECS
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHH-----------HhCCCCEEEEcCCCCCCCHHHHHHHHHHHHh-CCCcEEEECC
Confidence 555565422 3333333555666666 4456889999997764444344444444322 3456665555
Q ss_pred CCChhHHHHHHHhCCCcee-eCCCChHHHHHHHHHH
Q 046192 102 ENIPSRINRCLEEGAEEFF-LKPVQLADVNKLKPHL 136 (187)
Q Consensus 102 ~~~~~~~~~a~~~ga~~yl-~kP~~~~~l~~~i~~~ 136 (187)
..+...+..+++.|+++.+ .|--+.+++..+++.+
T Consensus 78 ~~~~~~i~~~l~~g~~gI~~P~V~s~~ev~~~~~~~ 113 (256)
T 1dxe_A 78 TNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVAST 113 (256)
T ss_dssp SSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhcCCceeeecCcCCHHHHHHHHHHh
Confidence 5678889999999998864 4444677775554443
No 204
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=68.59 E-value=27 Score=25.49 Aligned_cols=52 Identities=8% Similarity=0.295 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee------CCCChHHHHHH
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL------KPVQLADVNKL 132 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~------kP~~~~~l~~~ 132 (187)
.+++++.+++.. ++|||.-..-.+.+.+.++++.|+++.+. .|+++.+..+.
T Consensus 183 ~~~~~~~l~~~~---~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~~~~ 240 (253)
T 1thf_D 183 DTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEY 240 (253)
T ss_dssp CHHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHH
T ss_pred CHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHHHHH
Confidence 378888888753 78999988888889999999999998654 24455554443
No 205
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=68.54 E-value=16 Score=30.14 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=42.9
Q ss_pred cccEEEEeccCCCC-CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGM-TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|+|.+|...+.. .-.+.++++++..+ ++||++ ....+.+.+..+.++||+....
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p--~~~Vi~-g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFP--DVQVIG-GNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCT--TSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCC--CceEEE-eeeCcHHHHHHHHHcCCCEEEE
Confidence 47799999877654 34578999998875 777776 3345678899999999998765
No 206
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=68.49 E-value=10 Score=29.58 Aligned_cols=102 Identities=11% Similarity=0.139 Sum_probs=63.6
Q ss_pred HHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCC----C-CCHHHHHHHHHhhcCCCCCcE
Q 046192 24 IERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP----G-MTGYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 24 l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~----~-~~g~~~~~~l~~~~~~~~~~i 96 (187)
.-..|+..|+.+.. +.+|-..+..+ ..-++|.|=+|-.+- . .....+++.+-.....-++.+
T Consensus 217 ~l~~Lr~~G~~ialDDFGtG~ssl~~L-----------~~lp~d~iKID~sfv~~~~~~~~~~~iv~~ii~la~~lg~~v 285 (340)
T 4hjf_A 217 ILKTLRDAGAGLALDDFGTGFSSLSYL-----------TRLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEV 285 (340)
T ss_dssp HHHHHHHHTCEEEEECTTSSSCGGGTG-----------GGSCCSEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHcCCCccccCCCCCcchHHHH-----------HhCCCChhcccHHhhhcccCCHhHHHHHHHHHHHHHHcCCEE
Confidence 34445667887776 66777777777 444667998886432 1 223345554433221114445
Q ss_pred EEEeCCCChhHHHHHHHhCCC---c-eeeCCCChHHHHHHHHHHh
Q 046192 97 VIMSSENIPSRINRCLEEGAE---E-FFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~~~l~~~i~~~~ 137 (187)
| .-.-.+.+....+.+.|++ + |+.||...+++...++...
T Consensus 286 v-AEGVEt~~q~~~L~~lG~d~~QGy~~~~P~~~~~~~~~l~~~~ 329 (340)
T 4hjf_A 286 V-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEAY 329 (340)
T ss_dssp E-EECCCSHHHHHHHHHTTCCEEESTTTCCSBCHHHHHHHHHHHH
T ss_pred E-EEeCCcHHHHHHHHHcCCCEeecCccccCCCHHHHHHHHHhcc
Confidence 4 4445677788888889986 3 5799999999987765543
No 207
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=68.44 E-value=24 Score=26.39 Aligned_cols=91 Identities=10% Similarity=-0.091 Sum_probs=52.1
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH-hccCcccccccccccccEEEEeccCCCCCHH
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFL-GLLNEDEQTNSQVIQVNLIITDYCMPGMTGY 79 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l-~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~ 79 (187)
|.|......++||-+...-....+...|.+.|+.|..+....+.++.+ .... .....+..+..++.+.+..
T Consensus 1 M~m~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~~~~Dv~~~~~v 72 (280)
T 3tox_A 1 MVMSRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIA--------GGGGEAAALAGDVGDEALH 72 (280)
T ss_dssp ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHT--------TTTCCEEECCCCTTCHHHH
T ss_pred CCccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--------hcCCcEEEEECCCCCHHHH
Confidence 555444556788889988888899999988899888764433333332 1111 1112355554455554433
Q ss_pred -HHHHHHHhhcCCCCCcEEEEeC
Q 046192 80 -DLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 80 -~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
.+++.+.+... .+-+++-.+
T Consensus 73 ~~~~~~~~~~~g--~iD~lvnnA 93 (280)
T 3tox_A 73 EALVELAVRRFG--GLDTAFNNA 93 (280)
T ss_dssp HHHHHHHHHHHS--CCCEEEECC
T ss_pred HHHHHHHHHHcC--CCCEEEECC
Confidence 35666665543 566666544
No 208
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=68.37 E-value=9.8 Score=26.02 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=31.6
Q ss_pred ceEEEEE----eCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCc
Q 046192 8 QFHVLAV----DDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNE 53 (187)
Q Consensus 8 ~~~iliv----d~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~ 53 (187)
..|||++ +|.......|....-..++.+..+.+.+||..+++..+-
T Consensus 84 ~lrVLL~~VDv~d~~~~L~eL~~~c~~~~~TLiLawS~eEaa~Yle~~k~ 133 (146)
T 2a1i_A 84 ALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKA 133 (146)
T ss_dssp SEEEEEEECCSSSCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHHHT
T ss_pred ceEEEEEEEeCCChHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHHHHH
Confidence 4666643 345545555555554568999999999999999976553
No 209
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=67.98 E-value=19 Score=27.99 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=55.5
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhC-CceEEEe-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTS-SYQVTAV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~-~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
.++||.||+--..-.......+... ++++..+ ....+.+.. ..++ +-..+ + .+.
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~---~~~~-----------~~~~~------~----~~~ 59 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR---DFPD-----------AEVVH------E----LEE 59 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH---HCTT-----------SEEES------S----THH
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh---hCCC-----------CceEC------C----HHH
Confidence 4689999999876665455555544 6777653 322222111 1111 11111 1 122
Q ss_pred HHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHh
Q 046192 85 IKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
+-+. + ++-+|+++.. ...+.+..|+++|.+=|+-||+. .++..+.++.+.
T Consensus 60 ll~~-~--~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~ 113 (358)
T 3gdo_A 60 ITND-P--AIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAAD 113 (358)
T ss_dssp HHTC-T--TCCEEEECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred HhcC-C--CCCEEEEcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHH
Confidence 2221 1 3445554443 45677888899999888999964 555555444433
No 210
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=67.89 E-value=28 Score=26.40 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=40.8
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChh----HHHHHHHhCCCceeeCCCC--hHHHHHHHHHH
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPS----RINRCLEEGAEEFFLKPVQ--LADVNKLKPHL 136 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~----~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~ 136 (187)
.|++++-. + |..+++.+.. .+|+|+.......+ ......+.|. +++..|-+ .++|.+++..+
T Consensus 255 ad~~v~~s---g--~~~~~EAma~-----G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 255 ADVVVCRS---G--ALTVSEIAAA-----GLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp CSEEEECC---C--HHHHHHHHHH-----TCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred CCEEEECC---c--hHHHHHHHHh-----CCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 45777643 2 7777888765 77898764432111 1234456676 99998866 88998888766
No 211
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=67.81 E-value=33 Score=25.01 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee------CCCChHHHHHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL------KPVQLADVNKL 132 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~------kP~~~~~l~~~ 132 (187)
+++++.+++.. ++|+|....-.+.+.+.++++.|+++.+. .|+++.++.+.
T Consensus 185 ~~~i~~l~~~~---~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~ 241 (252)
T 1ka9_F 185 LRLTRMVAEAV---GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRY 241 (252)
T ss_dssp HHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 78999998864 78999988888888999999999998654 35666665544
No 212
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=67.35 E-value=7.7 Score=29.59 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=62.0
Q ss_pred HHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCC---CCC--HHHHHHHHHhhcCCCCCcE
Q 046192 24 IERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP---GMT--GYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 24 l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~---~~~--g~~~~~~l~~~~~~~~~~i 96 (187)
.-..|+..|+.+.. +.+|-..+..+.. -++|.|=+|-..- ..+ ...+++.+......-++.+
T Consensus 168 ~l~~Lr~~G~~ialDDFGtG~ssl~~L~~-----------l~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~v 236 (294)
T 2r6o_A 168 CLDALRARGVRLALDDFGTGYSSLSYLSQ-----------LPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEV 236 (294)
T ss_dssp HHHHHHHHTCEEEEEEETSSCBCHHHHHH-----------SCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHh-----------CCCCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCEE
Confidence 33445667887765 6777767777743 3566999985432 112 3344554433322114444
Q ss_pred EEEeCCCChhHHHHHHHhCCCc----eeeCCCChHHHHHHHHH
Q 046192 97 VIMSSENIPSRINRCLEEGAEE----FFLKPVQLADVNKLKPH 135 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~~~ga~~----yl~kP~~~~~l~~~i~~ 135 (187)
| .-.-.+.+....+.+.|++. |+.||...+++...+.+
T Consensus 237 v-AEGVEt~~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~ 278 (294)
T 2r6o_A 237 V-AEGIETAQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDR 278 (294)
T ss_dssp E-ECCCCSHHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHH
T ss_pred E-EecCCcHHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHHh
Confidence 3 45556788888888999863 58999999998776654
No 213
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=66.87 E-value=38 Score=25.36 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=60.9
Q ss_pred HHHHHHhCC--ceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeC
Q 046192 24 IERLLKTSS--YQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 24 l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
+++.|.... +.++..-...+.++.+ ....+|.+++|..-.-.+--++...++.... ...++++=+.
T Consensus 9 ~k~~l~~g~~~~g~~~~~~~p~~~e~a-----------~~~GaD~v~lDlE~~~~~~~~~~~~~~a~~~-~~~~~~VRv~ 76 (267)
T 2vws_A 9 FKERLRKGEVQIGLWLSSTTAYMAEIA-----------ATSGYDWLLIDGEHAPNTIQDLYHQLQAVAP-YASQPVIRPV 76 (267)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHH-----------HTTCCSEEEEETTTSCCCHHHHHHHHHHHTT-SSSEEEEECS
T ss_pred HHHHHHCCCCEEEEEEeCCCHHHHHHH-----------HhCCCCEEEEcCCCCCCCHHHHHHHHHHHHh-CCCcEEEEeC
Confidence 555554321 2333333445555666 3445889999997765565556555555432 2455555444
Q ss_pred CCChhHHHHHHHhCCCcee-eCCCChHHHHHHHHHH
Q 046192 102 ENIPSRINRCLEEGAEEFF-LKPVQLADVNKLKPHL 136 (187)
Q Consensus 102 ~~~~~~~~~a~~~ga~~yl-~kP~~~~~l~~~i~~~ 136 (187)
..+...+..+++.|++..+ .|--+.+++..+++.+
T Consensus 77 ~~~~~~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 77 EGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp SCCHHHHHHHHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 5678888999999998764 4444577766555443
No 214
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=66.84 E-value=26 Score=25.26 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..+.++.+++.. ++|+++-..-.+.+.+.+++..||++.+.
T Consensus 186 ~~~~i~~l~~~~---~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 186 DVELIRRVADSV---RIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp CHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 467888888763 78999888877778888999999998653
No 215
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=66.63 E-value=21 Score=28.27 Aligned_cols=56 Identities=9% Similarity=0.149 Sum_probs=39.6
Q ss_pred cccEEEEeccCCCC-CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGM-TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|+|.+|...... ...+.++++++..+ ++||++ ..-.+.+.+..+.++||+....
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p--~v~Vi~-G~v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYP--HLEIIG-GNVATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCT--TCEEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcC--CCceEe-eeeCCHHHHHHHHHcCCCEEEE
Confidence 46699998754322 23567888888765 777765 2234678899999999998766
No 216
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=66.29 E-value=21 Score=25.27 Aligned_cols=54 Identities=28% Similarity=0.418 Sum_probs=39.6
Q ss_pred cccEEEEeccCCC-------CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 63 QVNLIITDYCMPG-------MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 63 ~~dlvi~d~~~~~-------~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
.+|.++++...|. ..+++.++.+++.. ++|+++...-. .+.+.++++.|++++.
T Consensus 128 g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 128 GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIGGIN-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp TCSEEEEECSSCC----CCCCCHHHHHHHHHHHC---SSCEEEESSCC-TTTHHHHHTTTCSEEE
T ss_pred CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC---CCCEEEECCcC-HHHHHHHHHcCCCEEE
Confidence 3678888753332 34788888888754 68888776655 7788888899999874
No 217
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=66.23 E-value=30 Score=24.58 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=57.4
Q ss_pred HHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 046192 26 RLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENI 104 (187)
Q Consensus 26 ~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~ 104 (187)
+..+..|..+. .+.+..++..... ..+|.|.+.. .+..|.+.++.+++..+ .++||+....-.
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~------------~G~d~v~v~~--t~~~g~~~~~~l~~~~~-~~ipvia~GGI~- 158 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE------------AGAQALKIFP--SSAFGPQYIKALKAVLP-SDIAVFAVGGVT- 158 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH------------TTCSEEEETT--HHHHCHHHHHHHHTTSC-TTCEEEEESSCC-
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH------------CCCCEEEEec--CCCCCHHHHHHHHHhcc-CCCeEEEeCCCC-
Confidence 34444554432 3677777755542 2356777511 11236788888877542 148888877765
Q ss_pred hhHHHHHHHhCCCceee-CCCC-h----HHHHHHHHHHhh
Q 046192 105 PSRINRCLEEGAEEFFL-KPVQ-L----ADVNKLKPHLMK 138 (187)
Q Consensus 105 ~~~~~~a~~~ga~~yl~-kP~~-~----~~l~~~i~~~~~ 138 (187)
.+.+.++++.|++++.. .-+- . ++....++.+.+
T Consensus 159 ~~~i~~~~~~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~~ 198 (212)
T 2v82_A 159 PENLAQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVK 198 (212)
T ss_dssp TTTHHHHHHHTCSEEEECTTTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEChHHhCCCCCHHHHHHHHHHHHH
Confidence 78888999999998763 2222 2 445555555443
No 218
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=66.19 E-value=8.5 Score=28.74 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=35.9
Q ss_pred cccEEEEeccCCCCCH-------HHHHHHHHhhcCC--CCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMTG-------YDLLRKIKESASL--KDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g-------~~~~~~l~~~~~~--~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|.|++=...|+..| ++-++++|+.... .+.+|. +...-+.+.+..+.++||+.++.
T Consensus 156 ~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~-VDGGI~~~ti~~~~~aGAD~~V~ 222 (246)
T 3inp_A 156 NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLE-IDGGVNPYNIAEIAVCGVNAFVA 222 (246)
T ss_dssp GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEE-EESSCCTTTHHHHHTTTCCEEEE
T ss_pred cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEE-EECCcCHHHHHHHHHcCCCEEEE
Confidence 4778887666677554 3445555543210 134444 55555688899999999998765
No 219
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=65.94 E-value=18 Score=28.18 Aligned_cols=106 Identities=20% Similarity=0.150 Sum_probs=55.4
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHh-CCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKT-SSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~-~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
.++||.||+--..-...+..+... .+++++. +....+..+.+.... .+..-..+ +- -+.
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~----------g~~~~~~~------~~---~~l 82 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY----------AIEAKDYN------DY---HDL 82 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH----------TCCCEEES------SH---HHH
T ss_pred CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh----------CCCCeeeC------CH---HHH
Confidence 458999999988777666665523 4677765 433222222221100 00011111 11 122
Q ss_pred HHhhcCCCCCcEEEEeC--CCChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHH
Q 046192 85 IKESASLKDIPVVIMSS--ENIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPH 135 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~--~~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~ 135 (187)
+... .+-+|+++. ....+.+..++++|.+=|+-||+. .++..+.++.
T Consensus 83 l~~~----~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~ 133 (357)
T 3ec7_A 83 INDK----DVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEA 133 (357)
T ss_dssp HHCT----TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred hcCC----CCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHH
Confidence 2221 334444443 345566778889998888899973 5555544443
No 220
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=65.83 E-value=35 Score=25.68 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
.++++.+++.. ++|+++=..-++.+.+.++ .|||+.+.=
T Consensus 191 ~~~v~~vr~~~---~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 191 KDLVRRIKART---ALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp HHHHHHHHTTC---CSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred HHHHHHHHhhc---CCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 47888888853 7898876666668888775 999998763
No 221
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=65.16 E-value=21 Score=27.24 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=39.9
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHH
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHL 136 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~ 136 (187)
+.++..|+..+ ...+|.+ +. .+.+...+|...|++...+.|++++.+..+++.+
T Consensus 184 ~av~~ar~~~~-~~~~IgV-ev-~t~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 184 EAVRRAKARAP-HYLKVEV-EV-RSLEELEEALEAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp HHHHHHHHHSC-TTSCEEE-EE-SSHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCCEEEE-Ee-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 46777777765 2345554 33 3588899999999988889999999988777654
No 222
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=65.12 E-value=25 Score=25.84 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=50.1
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeC-------CHHHHHHHHhccCcccccccccccccEEEEeccCCCCC----
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVD-------SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT---- 77 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~-------~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~---- 77 (187)
++|||.+..-.....+...|.+.|+.|..+. +.+...+.+.. ..+|+|+.-......+
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~-----------~~~d~vi~~a~~~~~~~~~~ 74 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQE-----------IRPHIIIHCAAYTKVDQAEK 74 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHH-----------HCCSEEEECCCCCCHHHHTT
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHh-----------cCCCEEEECCcccChHHHhc
Confidence 4899999999999999999988899888753 33333334421 1366887665443311
Q ss_pred ------------HHHHHHHHHhhcCCCCCcEEEEeC
Q 046192 78 ------------GYDLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 78 ------------g~~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
...+++..++.+ .++|.+|+
T Consensus 75 ~~~~~~~~n~~~~~~l~~~~~~~~----~~~v~~SS 106 (287)
T 3sc6_A 75 ERDLAYVINAIGARNVAVASQLVG----AKLVYIST 106 (287)
T ss_dssp CHHHHHHHHTHHHHHHHHHHHHHT----CEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcC----CeEEEEch
Confidence 124566666543 36777776
No 223
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=64.99 E-value=9 Score=27.30 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=25.2
Q ss_pred CHHHHHHHHHhhcCCCCCcEEE--EeCCCChhHHHHHHHhCCCceeeCC
Q 046192 77 TGYDLLRKIKESASLKDIPVVI--MSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~--ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
.|.++++.+|+..+ +.|+.+ .........+..+.++|++..+.-.
T Consensus 39 ~g~~~i~~ir~~~~--~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~ 85 (211)
T 3f4w_A 39 EGVNAIKAIKEKYP--HKEVLADAKIMDGGHFESQLLFDAGADYVTVLG 85 (211)
T ss_dssp HTTHHHHHHHHHCT--TSEEEEEEEECSCHHHHHHHHHHTTCSEEEEET
T ss_pred ccHHHHHHHHHhCC--CCEEEEEEEeccchHHHHHHHHhcCCCEEEEeC
Confidence 45677777777643 556543 1222222236777777777666643
No 224
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=64.76 E-value=31 Score=26.45 Aligned_cols=105 Identities=13% Similarity=0.150 Sum_probs=55.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
+++|.||+--..-...+..+.+..++++.. +....+..+.+... +.+-..+ + .+.+-
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~------------~g~~~~~------~----~~~~l 61 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA------------NGAEAVA------S----PDEVF 61 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT------------TTCEEES------S----HHHHT
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH------------cCCceeC------C----HHHHh
Confidence 589999999776665554444434677764 44333433333211 1111111 1 12222
Q ss_pred hhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHh
Q 046192 87 ESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
+. + .+-+|+++.. ...+.+..+++.|.+=++-||+. .++..+.+..+.
T Consensus 62 ~~-~--~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~ 113 (344)
T 3euw_A 62 AR-D--DIDGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIG 113 (344)
T ss_dssp TC-S--CCCEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHG
T ss_pred cC-C--CCCEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 21 1 3445555443 34556778889998888899964 455444444333
No 225
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=64.48 E-value=47 Score=25.60 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=56.9
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhC-CceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTS-SYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~-~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
.++||.||+--..-.......+... ++++.. +....+..+ ...++ +-.. .+ .+.
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~~-----------~~~~------~~----~~~ 61 (352)
T 3kux_A 6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---ADWPA-----------IPVV------SD----PQM 61 (352)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TTCSS-----------CCEE------SC----HHH
T ss_pred CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hhCCC-----------CceE------CC----HHH
Confidence 4689999998877665445555554 677765 333222222 11111 1011 11 122
Q ss_pred HHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHHh
Q 046192 85 IKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHLM 137 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~~ 137 (187)
+-.. + ++-+|+++.. ...+.+..|+++|.+=|+-||+ +.++..+.++.+.
T Consensus 62 ll~~-~--~vD~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~ 115 (352)
T 3kux_A 62 LFND-P--SIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHAD 115 (352)
T ss_dssp HHHC-S--SCCEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHH
T ss_pred HhcC-C--CCCEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHH
Confidence 2221 1 4455555443 4467788899999999999994 4566555554443
No 226
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=64.36 E-value=25 Score=27.84 Aligned_cols=56 Identities=7% Similarity=0.010 Sum_probs=40.3
Q ss_pred cccEEEEeccCCCCC-HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMT-GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~-g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|+|.+|....... -.+.++++++..+ ++||+. ..-.+.+.+..+.++|||....
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~--~~~Vi~-G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLG--SRCIMA-GNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHT--TCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcC--CCeEEE-cCcCCHHHHHHHHHcCCCEEEE
Confidence 477999997654332 3568889998765 778876 1224578899999999998764
No 227
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=64.16 E-value=24 Score=22.13 Aligned_cols=120 Identities=12% Similarity=0.172 Sum_probs=66.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHH-HHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYD-LLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~-~~~~l~ 86 (187)
++-|++..-++........+++..||.+..+.++.+.-..++..-.. ....+-++++|- ....+ .++..+
T Consensus 2 nivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkk-----ynativvvvvdd----kewaekairfvk 72 (134)
T 2l69_A 2 NIVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKK-----YNATIVVVVVDD----KEWAEKAIRFVK 72 (134)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTC-----CCCEEEEEECSS----HHHHHHHHHHHH
T ss_pred cEEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHH-----hCCeEEEEEEcc----HHHHHHHHHHHH
Confidence 45677778888888889999999999999999888776655432110 112222333332 22222 333444
Q ss_pred hhcCCCCCcEEEEeCCCC--hhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 87 ESASLKDIPVVIMSSENI--PSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~--~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
..+. ++-||+.....+ .+...+.-+.|.. +-.-.+++++...++++++..
T Consensus 73 slga--qvliiiydqdqnrleefsrevrrrgfe--vrtvtspddfkkslerlirev 124 (134)
T 2l69_A 73 SLGA--QVLIIIYDQDQNRLEEFSREVRRRGFE--VRTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp HHCC--CCEEEEECSCHHHHHHHHHHHHHTTCC--EEEESSHHHHHHHHHHHHHHH
T ss_pred hcCC--eEEEEEEeCchhHHHHHHHHHHhcCce--EEEecChHHHHHHHHHHHHHh
Confidence 4443 444443332211 1122233344432 222336788888888887654
No 228
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=63.89 E-value=42 Score=24.82 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=49.5
Q ss_pred EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-------CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHH
Q 046192 37 AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-------MTGYDLLRKIKESASLKDIPVVIMSSENIPSRIN 109 (187)
Q Consensus 37 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-------~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~ 109 (187)
.+.+.+++.+... ..+|.|.+.-..|. .-|++.++++++..+ .++|++.+..- +.+.+.
T Consensus 141 S~ht~~Ea~~A~~------------~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~-~~iPvvAiGGI-~~~ni~ 206 (243)
T 3o63_A 141 STHDPDQVAAAAA------------GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGG-DDKPWFAIGGI-NAQRLP 206 (243)
T ss_dssp EECSHHHHHHHHH------------SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC-CTTTHH
T ss_pred eCCCHHHHHHHhh------------CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhcc-CCCCEEEecCC-CHHHHH
Confidence 3678887766542 23678888653332 237788888876521 27899999876 678899
Q ss_pred HHHHhCCCceee
Q 046192 110 RCLEEGAEEFFL 121 (187)
Q Consensus 110 ~a~~~ga~~yl~ 121 (187)
.++..||+++..
T Consensus 207 ~~~~aGa~gvav 218 (243)
T 3o63_A 207 AVLDAGARRIVV 218 (243)
T ss_dssp HHHHTTCCCEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999998754
No 229
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=63.78 E-value=29 Score=26.59 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=54.4
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
.+++|.||+--..-...+..+.+..++++.. +....+..+.+... +.+. -.-.+-- +.+
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~------------~~~~-----~~~~~~~---~ll 63 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE------------LAIP-----VAYGSYE---ELC 63 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH------------TTCC-----CCBSSHH---HHH
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH------------cCCC-----ceeCCHH---HHh
Confidence 4589999998776665554444435677765 33322333332111 0010 0001111 222
Q ss_pred HhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHH
Q 046192 86 KESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHL 136 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~ 136 (187)
.. + .+-+|+++.. ...+.+..+++.|.+=++-||+. .++..+.++.+
T Consensus 64 ~~--~--~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a 114 (330)
T 3e9m_A 64 KD--E--TIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIA 114 (330)
T ss_dssp HC--T--TCSEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHH
T ss_pred cC--C--CCCEEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 22 1 3444544433 34556778888998888899964 45554444433
No 230
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=63.65 E-value=12 Score=29.71 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=61.0
Q ss_pred HHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCC-----CCCHHHHHHHHHhhcCCCCCcEEE
Q 046192 26 RLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-----GMTGYDLLRKIKESASLKDIPVVI 98 (187)
Q Consensus 26 ~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-----~~~g~~~~~~l~~~~~~~~~~iI~ 98 (187)
..|+..|+.+.. +.+|-..+..+ ..-++|.|=+|-.+- +.....+++.+......-++.+|
T Consensus 283 ~~l~~~G~~ialDDfG~g~ssl~~L-----------~~l~~d~iKiD~~~v~~~~~~~~~~~~v~~i~~~a~~l~~~vv- 350 (400)
T 3sy8_A 283 VRLWIMGCGLAMDDFGAGYSSLDRL-----------CEFPFSQIKLDRTFVQKMKTQPRSCAVISSVVALAQALGISLV- 350 (400)
T ss_dssp HHHHHHTCEEEEEEECSCSGGGGSS-----------SSCCCSEEEECTHHHHHHHHCTTHHHHHHHHHHHHHHHTCEEE-
T ss_pred HHHHHCCCEEEEECCCCchhhHHHH-----------HhCCCCEEEECHHHHhhhhcChhHHHHHHHHHHHHHHcCCeEE-
Confidence 345667877765 77777777777 445677999986432 22344455544332221134343
Q ss_pred EeCCCChhHHHHHHHhCCC---c-eeeCCCChHHHHHHHHH
Q 046192 99 MSSENIPSRINRCLEEGAE---E-FFLKPVQLADVNKLKPH 135 (187)
Q Consensus 99 ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~~~l~~~i~~ 135 (187)
.-.-.+.+....+.+.|++ + |+.||...+++...+..
T Consensus 351 aEGVEt~~~~~~l~~~g~~~~QGy~~~~P~~~~~~~~~~~~ 391 (400)
T 3sy8_A 351 VEGVESDEQRVRLIELGCSIAQGYLFARPMPEQHFLDYCSG 391 (400)
T ss_dssp ECCCCCHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred EecCCcHHHHHHHHHcCCCEEEcCeecCcCCHHHHHHHHHh
Confidence 4455677788888889975 3 47899999998766543
No 231
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=63.38 E-value=30 Score=26.38 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
...++..|+..+ ...+|.+-.. +.+.+.+|.+.||+...+.+++++.+..+++.+.
T Consensus 180 ~~av~~ar~~~~-~~~~I~VEV~--tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~ 235 (285)
T 1o4u_A 180 ERAVQEVRKIIP-FTTKIEVEVE--NLEDALRAVEAGADIVMLDNLSPEEVKDISRRIK 235 (285)
T ss_dssp HHHHHHHHTTSC-TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCceEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 456777887765 2356666433 5889999999999888899999999988887764
No 232
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=63.11 E-value=46 Score=25.43 Aligned_cols=94 Identities=29% Similarity=0.384 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHhC-CceEEE------eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CCHHHHHHHHHh
Q 046192 16 DSIIDRKLIERLLKTS-SYQVTA------VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MTGYDLLRKIKE 87 (187)
Q Consensus 16 ~~~~~~~~l~~~l~~~-~~~v~~------~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~~ 87 (187)
|.......+.++++.. +..++. +.+..++++.+.. ..+|-|+..-.-+. .+|++.++.+.+
T Consensus 136 dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~-----------lGvdrILTSG~~~~a~~Gl~~Lk~Lv~ 204 (287)
T 3iwp_A 136 DGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLT-----------LGFERVLTSGCDSSALEGLPLIKRLIE 204 (287)
T ss_dssp TSCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHH-----------HTCSEEEECTTSSSTTTTHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHH-----------cCCCEEECCCCCCChHHhHHHHHHHHH
Confidence 3345556666666553 344443 3467888888843 34778998776554 689999998877
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHH-hCCCceeeC
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLE-EGAEEFFLK 122 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~-~ga~~yl~k 122 (187)
... ..++ |+..+.-+.+.+....+ .|++.|-..
T Consensus 205 ~a~-~rI~-ImaGGGV~~~Ni~~l~~~tG~~~~H~S 238 (287)
T 3iwp_A 205 QAK-GRIV-VMPGGGITDRNLQRILEGSGATEFHCS 238 (287)
T ss_dssp HHT-TSSE-EEECTTCCTTTHHHHHHHHCCSEEEEC
T ss_pred HhC-CCCE-EEECCCcCHHHHHHHHHhhCCCEEeEC
Confidence 643 1333 44445556666766665 899988653
No 233
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=63.01 E-value=23 Score=27.03 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
-+.++..|+..+ ..+|.+-.. +.+.+.++++.|++-..+..++++++..+++.+..
T Consensus 182 ~~av~~ar~~~~--~~~I~Vev~--t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l~~ 237 (284)
T 1qpo_A 182 VDALRAVRNAAP--DLPCEVEVD--SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDS 237 (284)
T ss_dssp HHHHHHHHHHCT--TSCEEEEES--SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhc
Confidence 457778888776 447777555 47899999999999888999999999888877653
No 234
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=63.00 E-value=19 Score=25.75 Aligned_cols=61 Identities=18% Similarity=0.382 Sum_probs=44.7
Q ss_pred HHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 43 KALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 43 ~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+.+.+...+| |++ .+ ||+.- .++++.+++.. ++|+|.=.--.+.+.+..|+++||+..-+
T Consensus 118 ~~~~~i~~~~P-----------D~i--Ei-LPGi~-p~iI~~i~~~~---~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 118 KGVALIQKVQP-----------DCI--EL-LPGII-PEQVQKMTQKL---HIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHCC-----------SEE--EE-ECTTC-HHHHHHHHHHH---CCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHhhcCC-----------CEE--EE-CCchh-HHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 46666654444 455 22 37754 37899998875 78999877778899999999999987654
No 235
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=62.76 E-value=21 Score=26.16 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=39.3
Q ss_pred CHHHHHHHHHhhc-CCCCCcEEE--EeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 77 TGYDLLRKIKESA-SLKDIPVVI--MSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 77 ~g~~~~~~l~~~~-~~~~~~iI~--ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
-|.++++.||+.. + +.|+.+ +.. ....++..+.++||+..........++.+.++.+.+
T Consensus 49 ~G~~~v~~ir~~~~~--~~~~dvhLmv~-~p~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~ 110 (228)
T 3ovp_A 49 FGHPVVESLRKQLGQ--DPFFDMHMMVS-KPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRE 110 (228)
T ss_dssp BCHHHHHHHHHHHCS--SSCEEEEEECS-CGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhCC--CCcEEEEEEeC-CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHH
Confidence 4889999999883 4 566654 333 345678888999999877765433445555555543
No 236
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=62.65 E-value=38 Score=23.99 Aligned_cols=54 Identities=7% Similarity=0.023 Sum_probs=29.5
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..|++++-..-+. ....++...++..+ ...+|..+. +..+.......|++..+.
T Consensus 65 ~ad~vi~~~~~d~-~n~~~~~~a~~~~~--~~~iia~~~--~~~~~~~l~~~G~d~vi~ 118 (218)
T 3l4b_C 65 KNDVVVILTPRDE-VNLFIAQLVMKDFG--VKRVVSLVN--DPGNMEIFKKMGITTVLN 118 (218)
T ss_dssp TTCEEEECCSCHH-HHHHHHHHHHHTSC--CCEEEECCC--SGGGHHHHHHHTCEECCC
T ss_pred cCCEEEEecCCcH-HHHHHHHHHHHHcC--CCeEEEEEe--CcchHHHHHHCCCCEEEC
Confidence 4678887653221 22234444555444 555554443 456666677889875444
No 237
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=62.64 E-value=24 Score=25.28 Aligned_cols=45 Identities=7% Similarity=0.135 Sum_probs=28.8
Q ss_pred cccccEEEEeccC-----CCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHH
Q 046192 61 VIQVNLIITDYCM-----PGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRI 108 (187)
Q Consensus 61 ~~~~dlvi~d~~~-----~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~ 108 (187)
...+|+||+|--. .-.+.-++++.|..... ..-+| +|++..+...
T Consensus 118 ~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~--~~~vI-lTGr~ap~~l 167 (196)
T 1g5t_A 118 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPG--HQTVI-ITGRGCHRDI 167 (196)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT--TCEEE-EECSSCCHHH
T ss_pred cCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC--CCEEE-EECCCCcHHH
Confidence 3568999999642 33566678888886543 56565 5554444443
No 238
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=62.55 E-value=36 Score=23.58 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCceEEEeC--CHHHHHHHH
Q 046192 18 IIDRKLIERLLKTSSYQVTAVD--SGNKALEFL 48 (187)
Q Consensus 18 ~~~~~~l~~~l~~~~~~v~~~~--~~~~a~~~l 48 (187)
....+.|...|+..||.|.... +..+..+.+
T Consensus 54 ~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l 86 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIKPHDDCTVEQIYEIL 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHH
Confidence 4566789999999999888753 444444444
No 239
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=62.42 E-value=15 Score=29.43 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=58.1
Q ss_pred HHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C---CHHHHHHHHHhhcCCCCCcEE
Q 046192 24 IERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M---TGYDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 24 l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~---~g~~~~~~l~~~~~~~~~~iI 97 (187)
.-..|+..|+.+.. +.+|-..+..+ ..-++|.|=+|-..-. . ....+++.+..........+|
T Consensus 327 ~l~~l~~~G~~ialDDfG~g~ssl~~L-----------~~l~~d~iKiD~~~i~~~~~~~~~~~~~~~i~~~~~~~~~vi 395 (437)
T 3hvb_A 327 LTQGLATLHCQAAISQFGCSLNPFNAL-----------KHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSI 395 (437)
T ss_dssp HHHHHHHTTCEEEEEEETCSSSHHHHH-----------TTSCCSEEEECGGGSSCCSSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHCCCEEEEcCCCCCccHHHHH-----------hhCCCCEEEECHHHHHhHhhCcHHHHHHHHHHHHHHcCCCEE
Confidence 34445677987775 78888888888 4445679999964432 1 222344443322211144444
Q ss_pred EEeCCCChhHHHHHHHhCCC---c-eeeCCCChHH
Q 046192 98 IMSSENIPSRINRCLEEGAE---E-FFLKPVQLAD 128 (187)
Q Consensus 98 ~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~~~ 128 (187)
...-.+.+....+.+.|++ + |+.||...++
T Consensus 396 -aegVEt~~~~~~l~~~G~~~~QG~~~~~P~~~~~ 429 (437)
T 3hvb_A 396 -VPFVESASVLATLWQAGATYIQGYYLQGPSQAMD 429 (437)
T ss_dssp -ECCCCSHHHHHHHHHHTCSEEECTTTCCCBSSCC
T ss_pred -eeeeCCHHHHHHHHHcCCCEeccccCCCCCcccc
Confidence 4567788888888899986 3 4778876544
No 240
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=62.42 E-value=36 Score=24.79 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=55.1
Q ss_pred HHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccC----CC-CCHHHHHHHHHhhcCCCCCcE
Q 046192 24 IERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM----PG-MTGYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 24 l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~----~~-~~g~~~~~~l~~~~~~~~~~i 96 (187)
.-..|++.|+.+.. +.++...+..+. .-++|.|=+|-.+ .. .....+++.+......-++.+
T Consensus 148 ~l~~L~~~G~~ialDdfG~g~s~l~~L~-----------~l~~d~iKiD~~~v~~~~~~~~~~~~l~~i~~~a~~l~~~v 216 (250)
T 4f3h_A 148 FLASVSAMGCKVGLEQFGSGLDSFQLLA-----------HFQPAFLKLDRSITGDIASARESQEKIREITSRAQPTGILT 216 (250)
T ss_dssp HHHHHHTTTCEEEEEEETSSTHHHHHHT-----------TSCCSEEEECHHHHTTTTTCSHHHHHHHHTHHHHHHHTCEE
T ss_pred HHHHHHHCCCEEEEeCCCCCchHHHHHh-----------hCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCEE
Confidence 34455667887765 788888888884 4456699999422 12 123445554433221113444
Q ss_pred EEEeCCCChhHHHHHHHhCCC---c-eeeCCCC
Q 046192 97 VIMSSENIPSRINRCLEEGAE---E-FFLKPVQ 125 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~ 125 (187)
| ...-.+.+....+.+.|++ + |+.||..
T Consensus 217 i-aeGVEt~~~~~~l~~~G~~~~QG~~~~~P~p 248 (250)
T 4f3h_A 217 V-AEFVADAQSMSSFFTAGVDYVQGDFVAPTGP 248 (250)
T ss_dssp E-ECCCCCHHHHHHHHHHTCSEECSTTTCCCBS
T ss_pred E-EeccCCHHHHHHHHHcCCCEEeeccccCCCC
Confidence 3 5556678888888899975 3 4677754
No 241
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=62.34 E-value=43 Score=24.50 Aligned_cols=93 Identities=10% Similarity=-0.013 Sum_probs=51.7
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC-CHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD-SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY 79 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~ 79 (187)
|..+.....++||.....-....+...|.+.|+.|..+. +.+.+-+....... ......+..+..++.+.+..
T Consensus 1 M~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~------~~~~~~~~~~~~Dv~~~~~v 74 (265)
T 3lf2_A 1 MKPYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQ------RFPGARLFASVCDVLDALQV 74 (265)
T ss_dssp --CCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------HSTTCCEEEEECCTTCHHHH
T ss_pred CCccCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH------hcCCceEEEEeCCCCCHHHH
Confidence 444455566788999888888889999988898887754 33332222211100 00011244444444554433
Q ss_pred -HHHHHHHhhcCCCCCcEEEEeC
Q 046192 80 -DLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 80 -~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
.+++.+.+... .+-+++-.+
T Consensus 75 ~~~~~~~~~~~g--~id~lvnnA 95 (265)
T 3lf2_A 75 RAFAEACERTLG--CASILVNNA 95 (265)
T ss_dssp HHHHHHHHHHHC--SCSEEEECC
T ss_pred HHHHHHHHHHcC--CCCEEEECC
Confidence 46666666543 566666544
No 242
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=62.07 E-value=31 Score=28.60 Aligned_cols=69 Identities=12% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHH-HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCC
Q 046192 39 DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYD-LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAE 117 (187)
Q Consensus 39 ~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~-~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~ 117 (187)
.+..+.++.+ ....+|++.+|...++..+.. +++++++..+ ++|++ .....+.+.+..+.++|++
T Consensus 255 ~d~~era~aL-----------veaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~--~~~vi-~g~v~t~e~a~~~~~aGad 320 (511)
T 3usb_A 255 ADAMTRIDAL-----------VKASVDAIVLDTAHGHSQGVIDKVKEVRAKYP--SLNII-AGNVATAEATKALIEAGAN 320 (511)
T ss_dssp TTHHHHHHHH-----------HHTTCSEEEEECSCTTSHHHHHHHHHHHHHCT--TSEEE-EEEECSHHHHHHHHHHTCS
T ss_pred cchHHHHHHH-----------HhhccceEEecccccchhhhhhHHHHHHHhCC--CceEE-eeeeccHHHHHHHHHhCCC
Q ss_pred ceee
Q 046192 118 EFFL 121 (187)
Q Consensus 118 ~yl~ 121 (187)
....
T Consensus 321 ~i~v 324 (511)
T 3usb_A 321 VVKV 324 (511)
T ss_dssp EEEE
T ss_pred EEEE
No 243
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=61.94 E-value=24 Score=21.39 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=36.1
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcc
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLL 51 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~ 51 (187)
+-|||+.++....+..+..-+..+..+..+.+.++.-.++...
T Consensus 3 lyvliisndkklieearkmaekanlelrtvktedelkkyleef 45 (110)
T 2kpo_A 3 LYVLIISNDKKLIEEARKMAEKANLELRTVKTEDELKKYLEEF 45 (110)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHHHH
T ss_pred EEEEEEcCcHHHHHHHHHHHHhcCceeeeeccHHHHHHHHHHH
Confidence 5689999999999988888888889999999988887777433
No 244
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=61.65 E-value=19 Score=25.84 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+++.++.+++.. ++||+....-.+.+.+.+++..||+.++.
T Consensus 163 ~~~~~~~~~~~~---~ipvia~GGI~~~~~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 163 DFQFLKDVLQSV---DAKVIAEGNVITPDMYKRVMDLGVHCSVV 203 (223)
T ss_dssp HHHHHHHHHHHC---CSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHhhC---CCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 456778887753 78999888887899999999999998765
No 245
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=61.44 E-value=29 Score=22.26 Aligned_cols=105 Identities=11% Similarity=-0.034 Sum_probs=51.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCc-----c---ccccc--ccccccEEEEeccCCCCCH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNE-----D---EQTNS--QVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~-----~---~~~~~--~~~~~dlvi~d~~~~~~~g 78 (187)
.+|+|++. -.....+...|...|+.|..+....+..+.+..... | ..... .-..+|+|+.-...+....
T Consensus 7 ~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~ 85 (144)
T 2hmt_A 7 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS 85 (144)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHHHH
T ss_pred CcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchHHH
Confidence 46899997 566667777777778877765444444343321100 0 00000 1234677776553321112
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
..++..+++.++ . +++..+. +..+.....+.|++..
T Consensus 86 ~~~~~~~~~~~~--~-~ii~~~~--~~~~~~~l~~~g~~~v 121 (144)
T 2hmt_A 86 TLTTLLLKELDI--P-NIWVKAQ--NYYHHKVLEKIGADRI 121 (144)
T ss_dssp HHHHHHHHHTTC--S-EEEEECC--SHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHcCC--C-eEEEEeC--CHHHHHHHHHcCCCEE
Confidence 334455555432 2 4444333 3444444455677643
No 246
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=61.43 E-value=33 Score=24.96 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=39.0
Q ss_pred CHHHHHHHHHhhcCCCCCcEE--EEeCCCChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHHh
Q 046192 77 TGYDLLRKIKESASLKDIPVV--IMSSENIPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHLM 137 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI--~ls~~~~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~~ 137 (187)
.|.++++.+|+.. +.|+. +++. +...++..+.++||+....... ..++..+.++.+.
T Consensus 49 ~g~~~v~~lr~~~---~~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~ 109 (230)
T 1tqj_A 49 IGPLIVDAIRPLT---KKTLDVHLMIV-EPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIR 109 (230)
T ss_dssp BCHHHHHHHGGGC---CSEEEEEEESS-SGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHH
T ss_pred hhHHHHHHHHhhc---CCcEEEEEEcc-CHHHHHHHHHHcCCCEEEECcccccchhHHHHHHHHH
Confidence 4779999999864 45655 5554 3456788999999999877655 4444555555554
No 247
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=61.38 E-value=22 Score=27.50 Aligned_cols=103 Identities=16% Similarity=0.240 Sum_probs=53.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-CceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTS-SYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~-~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
+++|.||.--..-.. ....+... +++++. +....+..+.+... +.+ +..+. +-+.+
T Consensus 5 ~~~vgiiG~G~~g~~-~~~~l~~~~~~~lvav~d~~~~~~~~~~~~------------~g~-------~~~~~--~~~~l 62 (354)
T 3db2_A 5 PVGVAAIGLGRWAYV-MADAYTKSEKLKLVTCYSRTEDKREKFGKR------------YNC-------AGDAT--MEALL 62 (354)
T ss_dssp CEEEEEECCSHHHHH-HHHHHTTCSSEEEEEEECSSHHHHHHHHHH------------HTC-------CCCSS--HHHHH
T ss_pred cceEEEEccCHHHHH-HHHHHHhCCCcEEEEEECCCHHHHHHHHHH------------cCC-------CCcCC--HHHHh
Confidence 589999998776554 44455444 777764 44333333332110 101 11111 11222
Q ss_pred HhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHH
Q 046192 86 KESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHL 136 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~ 136 (187)
... ++-+|+++.. ...+.+..+++.|.+=++-||+. .++..+.++.+
T Consensus 63 ~~~----~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a 113 (354)
T 3db2_A 63 ARE----DVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVI 113 (354)
T ss_dssp HCS----SCCEEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHH
T ss_pred cCC----CCCEEEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHH
Confidence 221 3444444433 34566778888898888889864 45544444433
No 248
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=61.33 E-value=17 Score=26.83 Aligned_cols=41 Identities=10% Similarity=0.261 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+++++.+++.. ++|+|....-.+.+.+.+++..||++.+.
T Consensus 188 ~~~~i~~l~~~~---~ipvia~GGI~~~ed~~~~~~~Gadgv~v 228 (266)
T 2w6r_A 188 DTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLAGADAALA 228 (266)
T ss_dssp CHHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHcCCHHHHc
Confidence 378888888753 78999998888889999999999998654
No 249
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=60.80 E-value=53 Score=25.03 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=37.0
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.|+++... .|+ +++.+.. .+|+|+.......... .+.| .+++.. .+.++|.+++..++..
T Consensus 275 ad~~v~~S-----~g~-~lEA~a~-----G~PvI~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~d 334 (376)
T 1v4v_A 275 SLLLVTDS-----GGL-QEEGAAL-----GVPVVVLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLEN 334 (376)
T ss_dssp EEEEEESC-----HHH-HHHHHHT-----TCCEEECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHTC
T ss_pred CcEEEECC-----cCH-HHHHHHc-----CCCEEeccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHhC
Confidence 45776542 344 4454443 7899876443333332 4555 467764 4899999999998864
No 250
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=60.64 E-value=12 Score=29.16 Aligned_cols=106 Identities=10% Similarity=0.121 Sum_probs=57.2
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhC-CceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTS-SYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~-~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
+.++||.||+--..-.......+... +++++.+.+.... .+....+ .+-..+ + .+.
T Consensus 3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~~~~~-----------~~~~~~------~----~~~ 59 (362)
T 3fhl_A 3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKE--LSKERYP-----------QASIVR------S----FKE 59 (362)
T ss_dssp CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCC--GGGTTCT-----------TSEEES------C----SHH
T ss_pred CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHHHhCC-----------CCceEC------C----HHH
Confidence 35689999999876655344445444 6777654332211 0111100 111111 1 122
Q ss_pred HHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHHh
Q 046192 85 IKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHLM 137 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~~ 137 (187)
+-+. + ++-+|+++.. ...+.+..|+++|.+=|+-||+ +.++..+.++.+.
T Consensus 60 ll~~-~--~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~ 113 (362)
T 3fhl_A 60 LTED-P--EIDLIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAK 113 (362)
T ss_dssp HHTC-T--TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred HhcC-C--CCCEEEEeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 2221 1 4555555544 3456788899999999999998 4666555554443
No 251
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=60.61 E-value=34 Score=24.37 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=38.0
Q ss_pred ccEEEEeccCCC--------CCHHHHHHHHHhhc-CCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 64 VNLIITDYCMPG--------MTGYDLLRKIKESA-SLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 64 ~dlvi~d~~~~~--------~~g~~~~~~l~~~~-~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
.|.+.++--.|. .-|++.++.+++.. . ++|++.+..-. .+.+.++++.|+++.-
T Consensus 108 aDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~--~iPviaiGGI~-~~nv~~~~~~Ga~gVa 170 (210)
T 3ceu_A 108 YDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKII--DSKVMALGGIN-EDNLLEIKDFGFGGAV 170 (210)
T ss_dssp SSEEEECCCC---------CCCCHHHHHHHHHTTCS--STTEEEESSCC-TTTHHHHHHTTCSEEE
T ss_pred CCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCC--CCCEEEECCCC-HHHHHHHHHhCCCEEE
Confidence 668887654321 23677888887642 3 78999887764 7788899999998863
No 252
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=60.33 E-value=33 Score=29.35 Aligned_cols=96 Identities=6% Similarity=0.026 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCceEEEe---CCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C-CHHHHHHHHHhhcCCCCCc
Q 046192 21 RKLIERLLKTSSYQVTAV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M-TGYDLLRKIKESASLKDIP 95 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~-~g~~~~~~l~~~~~~~~~~ 95 (187)
...+...|+..||+|... .+ ++..+..... .+|+|.+...+.. + ..-++++.|++.+. .
T Consensus 527 a~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e~-----------~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~----~ 590 (637)
T 1req_B 527 EGFSSPVWHIAGIDTPQVEGGTT-AEIVEAFKKS-----------GAQVADLCSSAKVYAQQGLEVAKALKAAGA----K 590 (637)
T ss_dssp HHHHHHHHHHTTCBCCEEECCCH-HHHHHHHHHH-----------TCSEEEEECCHHHHHHHHHHHHHHHHHTTC----S
T ss_pred HHHHHHHHHhCCeeEEeCCCCCC-HHHHHHHHhc-----------CCCEEEEecccHHHHHHHHHHHHHHHhCCC----C
Confidence 345666778889988753 34 7777777443 3558888765542 2 24568888888753 3
Q ss_pred EEEEeCCCChh--HHHHHHHhCCCceeeCCCChHHHHHHH
Q 046192 96 VVIMSSENIPS--RINRCLEEGAEEFFLKPVQLADVNKLK 133 (187)
Q Consensus 96 iI~ls~~~~~~--~~~~a~~~ga~~yl~kP~~~~~l~~~i 133 (187)
.|++......+ ......+ |+++|+.--.+..++...+
T Consensus 591 ~V~vgG~P~~d~~~~~~~~~-G~D~~~~~g~~~~~~l~~l 629 (637)
T 1req_B 591 ALYLSGAFKEFGDDAAEAEK-LIDGRLFMGMDVVDTLSST 629 (637)
T ss_dssp EEEEESCGGGGGGGHHHHHH-HCCCEECTTCCHHHHHHHH
T ss_pred eEEEeCCCCccchhhHHHHh-ccceEecCCcCHHHHHHHH
Confidence 34566642221 2344455 9999998877776654443
No 253
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=60.27 E-value=35 Score=23.08 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCceEEEeC--CHHHHHHHHh
Q 046192 20 DRKLIERLLKTSSYQVTAVD--SGNKALEFLG 49 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~~~--~~~~a~~~l~ 49 (187)
..+.|...|+..||+|.... +..+..+.+.
T Consensus 42 D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~ 73 (146)
T 2dko_A 42 DAANLRETFRNLKYEVRNKNDLTREEIVELMR 73 (146)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHH
Confidence 56789999999999988753 4555555553
No 254
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=60.21 E-value=26 Score=25.58 Aligned_cols=86 Identities=16% Similarity=0.134 Sum_probs=51.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~l 85 (187)
..+++|.+...-....+...|.+.|+.|..+ .+..+..+.+...... . ...+.++..++.+.+.+ ++++.+
T Consensus 7 ~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~Dl~~~~~v~~~~~~~ 79 (264)
T 3i4f_A 7 VRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKD-----V--EERLQFVQADVTKKEDLHKIVEEA 79 (264)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGG-----G--GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh-----c--CCceEEEEecCCCHHHHHHHHHHH
Confidence 3578899998888889999998889988775 4444444443222111 1 12244444445554433 466666
Q ss_pred HhhcCCCCCcEEEEeCC
Q 046192 86 KESASLKDIPVVIMSSE 102 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~ 102 (187)
.+... .+-+++..+.
T Consensus 80 ~~~~g--~id~lv~~Ag 94 (264)
T 3i4f_A 80 MSHFG--KIDFLINNAG 94 (264)
T ss_dssp HHHHS--CCCEEECCCC
T ss_pred HHHhC--CCCEEEECCc
Confidence 66544 5666665543
No 255
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=60.11 E-value=52 Score=24.70 Aligned_cols=89 Identities=10% Similarity=0.038 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEec-cCCCC-CHHHHHHHHHhhcCCCCCcEE
Q 046192 21 RKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY-CMPGM-TGYDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~-~~~~~-~g~~~~~~l~~~~~~~~~~iI 97 (187)
...+..+-...|.++.. +.+.+|+-..+.. ..++|=++- ++... --++....+....| .+..+|
T Consensus 142 l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~------------~a~iIGINNRnL~tf~vdl~~t~~L~~~ip-~~~~~V 208 (258)
T 4a29_A 142 LESLLEYARSYGMEPLILINDENDLDIALRI------------GARFIGIMSRDFETGEINKENQRKLISMIP-SNVVKV 208 (258)
T ss_dssp HHHHHHHHHHTTCCCEEEESSHHHHHHHHHT------------TCSEEEECSBCTTTCCBCHHHHHHHHTTSC-TTSEEE
T ss_pred HHHHHHHHHHHhHHHHHhcchHHHHHHHhcC------------CCcEEEEeCCCccccccCHHHHHHHHhhCC-CCCEEE
Confidence 44555566678876654 8898887666632 234665543 23222 13455666666655 356666
Q ss_pred EEeCCCChhHHHHHHHhCCCceeeC
Q 046192 98 IMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 98 ~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
.=|+-.+.+.+......|++++|.-
T Consensus 209 sESGI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 209 AKLGISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp EEESSCCHHHHHHHHHTTCCEEEEC
T ss_pred EcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 6677788999999999999999875
No 256
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=60.05 E-value=42 Score=25.26 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCceEEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCCC
Q 046192 18 IIDRKLIERLLKTSSYQVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG 75 (187)
Q Consensus 18 ~~~~~~l~~~l~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~ 75 (187)
....+.|...|+..||+|... -+..+..+.+...... .+...|++++=+.-.|
T Consensus 55 ~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~-----dh~~~d~~v~~~lsHG 109 (272)
T 1m72_A 55 NVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEM-----DHSDADCLLVAVLTHG 109 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTS-----CCTTEEEEEEEEESCE
T ss_pred HHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHh-----hcCCCCEEEEEEcCCC
Confidence 566789999999999999875 3555666655443221 2345776666554443
No 257
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=59.86 E-value=13 Score=28.42 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=43.7
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceee-----CCCChHHHHHHHHHHhhhh
Q 046192 77 TGYDLLRKIKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFL-----KPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~-----kP~~~~~l~~~i~~~~~~~ 140 (187)
..+++++.+++.. .+|||++++. .+++.+..+++.|+++.+. +.-++......+.......
T Consensus 185 ad~elI~~Ike~~---~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~ 252 (291)
T 3o07_A 185 VPVSLLKDVLEKG---KLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF 252 (291)
T ss_dssp SCHHHHHHHHHHT---SCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcc---CCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence 3478889998863 7899987443 4689999999999999753 3335777666666665543
No 258
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=59.77 E-value=56 Score=24.93 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=31.4
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
..|.+++-..- +......+..+++.++ +.++++-.. +.+......+.|++..+
T Consensus 177 ~a~~vi~~~~~-d~~n~~~~~~ar~~~~--~~~iiar~~--~~~~~~~l~~~G~d~vi 229 (336)
T 1lnq_A 177 GARAVIVDLES-DSETIHCILGIRKIDE--SVRIIAEAE--RYENIEQLRMAGADQVI 229 (336)
T ss_dssp TEEEEEECCSS-HHHHHHHHHHHHTTCT--TSEEEEECS--SGGGHHHHHHTTCSEEE
T ss_pred hccEEEEcCCc-cHHHHHHHHHHHHHCC--CCeEEEEEC--CHHHHHHHHHcCCCEEE
Confidence 46677775532 1234445666777665 666666554 45555666678988554
No 259
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=59.37 E-value=48 Score=24.02 Aligned_cols=86 Identities=10% Similarity=0.024 Sum_probs=50.6
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHH
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLL 82 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~ 82 (187)
|.....+++|.....-....+...|.+.|+.|..+....+..+.+..... .. ...+..++.+.+.. .++
T Consensus 5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------~~--~~~~~~Dv~d~~~v~~~~ 74 (248)
T 3op4_A 5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG--------DN--GKGMALNVTNPESIEAVL 74 (248)
T ss_dssp TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--------GG--EEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--------cc--ceEEEEeCCCHHHHHHHH
Confidence 33445678888888888889999998899988875444443333321111 11 33333444444433 466
Q ss_pred HHHHhhcCCCCCcEEEEeC
Q 046192 83 RKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~ 101 (187)
+.+.+... .+-+++-.+
T Consensus 75 ~~~~~~~g--~iD~lv~nA 91 (248)
T 3op4_A 75 KAITDEFG--GVDILVNNA 91 (248)
T ss_dssp HHHHHHHC--CCSEEEECC
T ss_pred HHHHHHcC--CCCEEEECC
Confidence 66666544 566766544
No 260
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=59.32 E-value=43 Score=25.67 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=56.4
Q ss_pred CCceEEEEEeCCHHHHH-HHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRK-LIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~-~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
++++||.||+--..-+. .+..+....+++++.+.+... .+ +.+-..+ + .+.
T Consensus 23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~-------~~-----------~g~~~~~------~----~~~ 74 (330)
T 4ew6_A 23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHG-------TV-----------EGVNSYT------T----IEA 74 (330)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSC-------CC-----------TTSEEES------S----HHH
T ss_pred CCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCCh-------hh-----------cCCCccC------C----HHH
Confidence 34689999999877663 444444434677765433221 00 1111111 1 222
Q ss_pred HHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHHh
Q 046192 85 IKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHLM 137 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~~ 137 (187)
+-+..+ ++-+|+++.. ...+.+..|+++|.+=++-||+ +.++..+.++.+.
T Consensus 75 ll~~~~--~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~ 129 (330)
T 4ew6_A 75 MLDAEP--SIDAVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALAN 129 (330)
T ss_dssp HHHHCT--TCCEEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHH
T ss_pred HHhCCC--CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 222212 4455555543 3456688899999999999997 4556555554443
No 261
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=58.99 E-value=9.4 Score=26.78 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=51.6
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEE-EeC---CHHHHHHHHhccCcccccccccccccEEEEeccCCCC-----
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVT-AVD---SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM----- 76 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~-~~~---~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~----- 76 (187)
....+|++++|.......+.+.|... +.+. ..- +..+.+..+.. + .....||+|++.+-..+.
T Consensus 32 ~~~~~i~~~GDSit~g~~~~~~l~~~-~~v~n~g~~G~~~~~~~~~l~~---~----~~~~~pd~vvi~~G~ND~~~~~~ 103 (214)
T 2hsj_A 32 VVEPNILFIGDSIVEYYPLQELFGTS-KTIVNRGIRGYQTGLLLENLDA---H----LYGGAVDKIFLLIGTNDIGKDVP 103 (214)
T ss_dssp SSCCSEEEEESHHHHTCCHHHHHCSS-SCEEEEECTTCCHHHHHHTGGG---G----CCCSCCCEEEEECCHHHHHTTCC
T ss_pred cccCCEEEEecchhcCCCHHHHcCCc-ceEEecCccchhHHHHHHHhhH---H----HHhcCCCEEEEEEecCcCCcCCC
Confidence 45678999999998877777777542 3342 222 33344433322 1 023367899997633221
Q ss_pred ------CHHHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 77 ------TGYDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 77 ------~g~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
+--.+++.+++..| ..+|++++..
T Consensus 104 ~~~~~~~l~~~i~~l~~~~p--~~~iil~~~~ 133 (214)
T 2hsj_A 104 VNEALNNLEAIIQSVARDYP--LTEIKLLSIL 133 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHCT--TCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHhCC--CCeEEEEecC
Confidence 11246677787765 6788888754
No 262
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=58.89 E-value=49 Score=23.96 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=43.4
Q ss_pred cc-EEEEeccCCC---CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHh---CCCceee------CCCChHHHH
Q 046192 64 VN-LIITDYCMPG---MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEE---GAEEFFL------KPVQLADVN 130 (187)
Q Consensus 64 ~d-lvi~d~~~~~---~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~---ga~~yl~------kP~~~~~l~ 130 (187)
++ +++.+..-.+ .-.++.++++++.. ++|||.-..-.+.+.+.++++. |+++++. .|++..++.
T Consensus 160 ~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~---~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~~~ 236 (244)
T 1vzw_A 160 CARYVVTDIAKDGTLQGPNLELLKNVCAAT---DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEAL 236 (244)
T ss_dssp CCCEEEEEC-------CCCHHHHHHHHHTC---SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHH
T ss_pred CCEEEEeccCcccccCCCCHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHHHH
Confidence 44 4555544222 12467888888753 7899998888888999999998 9987653 355555544
Q ss_pred HH
Q 046192 131 KL 132 (187)
Q Consensus 131 ~~ 132 (187)
+.
T Consensus 237 ~~ 238 (244)
T 1vzw_A 237 EA 238 (244)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 263
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=58.64 E-value=53 Score=24.29 Aligned_cols=113 Identities=11% Similarity=0.127 Sum_probs=59.9
Q ss_pred eEEEEEeCCHHHHHHHHHHHHh-CCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKT-SSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~-~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
++|.|+.-.-.....+.+.+.. .++++..+.+..+-++.+. ...+| |++|+..|. ...+.+....+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~-----------~~~~D-vvIDfT~p~-a~~~~~~~a~~ 67 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLT-----------DGNTE-VVIDFTHPD-VVMGNLEFLID 67 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHH-----------HTTCC-EEEECSCTT-THHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHh-----------ccCCc-EEEEccChH-HHHHHHHHHHH
Confidence 3788999766666667776654 4788876432211111111 11356 788998775 34566666555
Q ss_pred hcCCCCCcEEEEeCCCChhHHHH---HHH-h-CCCceeeCCCChHH--HHHHHHHHhh
Q 046192 88 SASLKDIPVVIMSSENIPSRINR---CLE-E-GAEEFFLKPVQLAD--VNKLKPHLMK 138 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~---a~~-~-ga~~yl~kP~~~~~--l~~~i~~~~~ 138 (187)
. ..|+|+-|..-+.+.... +.+ . ++--++.-.++..- +...++.+.+
T Consensus 68 ~----g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~~aa~ 121 (245)
T 1p9l_A 68 N----GIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAAR 121 (245)
T ss_dssp T----TCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHHHHGG
T ss_pred c----CCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHHHHHh
Confidence 3 667887555444443322 222 1 33334555555433 3444444433
No 264
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=58.45 E-value=0.88 Score=27.72 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.9
Q ss_pred chhhhhhcccccccCCCCCCCccC
Q 046192 163 ADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 163 ~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
...++.++.+++.+..+|+|++||
T Consensus 19 ~~~Lt~~e~~vl~l~~~g~s~~eI 42 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQGLPNKMI 42 (82)
T ss_dssp GGGSCHHHHHHHHHHTTTCCHHHH
T ss_pred HccCCHHHHHHHHHHHcCCCHHHH
Confidence 456888999999999999999887
No 265
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=58.07 E-value=46 Score=23.45 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCceEEEeC--CHHHHHHHHh
Q 046192 19 IDRKLIERLLKTSSYQVTAVD--SGNKALEFLG 49 (187)
Q Consensus 19 ~~~~~l~~~l~~~~~~v~~~~--~~~~a~~~l~ 49 (187)
...+.|...|+..||+|.... +..+..+.+.
T Consensus 69 ~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~ 101 (179)
T 3p45_A 69 ADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIH 101 (179)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 467889999999999998753 4555555554
No 266
>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*
Probab=57.79 E-value=11 Score=29.88 Aligned_cols=92 Identities=11% Similarity=0.143 Sum_probs=53.3
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCC-ceEEEeCCHHHH---HHHH----------------hccCcccccccc
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSS-YQVTAVDSGNKA---LEFL----------------GLLNEDEQTNSQ 60 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~-~~v~~~~~~~~a---~~~l----------------~~~~~~~~~~~~ 60 (187)
|+||+ .+++|.|++..-.....+.++|.... +++..+.+...+ +... .....++ ..
T Consensus 1 ~~~M~-~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~---~~ 76 (359)
T 4dpk_A 1 MILMR-RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDP---KL 76 (359)
T ss_dssp ------CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCG---GG
T ss_pred CCcCC-CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCH---HH
Confidence 66643 46899999999999999999998765 566554322211 1111 1010110 01
Q ss_pred cccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 61 VIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 61 ~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
-...|+|+.- +|.....++...+.+. ..++|-+|+.
T Consensus 77 ~~~vDvvf~a--~p~~~s~~~a~~~~~~----G~~vIDlSa~ 112 (359)
T 4dpk_A 77 MDDVDIIFSP--LPQGAAGPVEEQFAKE----GFPVISNSPD 112 (359)
T ss_dssp CTTCCEEEEC--CCTTTHHHHHHHHHHT----TCEEEECSST
T ss_pred hcCCCEEEEC--CChHHHHHHHHHHHHC----CCEEEEcCCC
Confidence 1357888876 4666677888877664 5577777764
No 267
>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*
Probab=57.79 E-value=11 Score=29.88 Aligned_cols=92 Identities=11% Similarity=0.143 Sum_probs=53.3
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHHHhCC-ceEEEeCCHHHH---HHHH----------------hccCcccccccc
Q 046192 1 MGMVTDSQFHVLAVDDSIIDRKLIERLLKTSS-YQVTAVDSGNKA---LEFL----------------GLLNEDEQTNSQ 60 (187)
Q Consensus 1 m~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~-~~v~~~~~~~~a---~~~l----------------~~~~~~~~~~~~ 60 (187)
|+||+ .+++|.|++..-.....+.++|.... +++..+.+...+ +... .....++ ..
T Consensus 1 ~~~M~-~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~---~~ 76 (359)
T 4dpl_A 1 MILMR-RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDP---KL 76 (359)
T ss_dssp ------CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCG---GG
T ss_pred CCcCC-CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCH---HH
Confidence 66643 46899999999999999999998765 566554322211 1111 1010110 01
Q ss_pred cccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 61 VIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 61 ~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
-...|+|+.- +|.....++...+.+. ..++|-+|+.
T Consensus 77 ~~~vDvvf~a--~p~~~s~~~a~~~~~~----G~~vIDlSa~ 112 (359)
T 4dpl_A 77 MDDVDIIFSP--LPQGAAGPVEEQFAKE----GFPVISNSPD 112 (359)
T ss_dssp CTTCCEEEEC--CCTTTHHHHHHHHHHT----TCEEEECSST
T ss_pred hcCCCEEEEC--CChHHHHHHHHHHHHC----CCEEEEcCCC
Confidence 1357888876 4666677888877664 5577777764
No 268
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=57.69 E-value=1.1 Score=27.83 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=20.9
Q ss_pred chhhhhhcccccccCCCCCCCccC
Q 046192 163 ADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 163 ~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
...++.++.+++.+..+|+|++||
T Consensus 27 l~~Lt~~e~~vl~l~~~g~s~~eI 50 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKGYSNQEI 50 (91)
T ss_dssp GGGCCSHHHHHHHHHHTTCCTTHH
T ss_pred HhcCCHHHHHHHHHHHcCCCHHHH
Confidence 356888999999999999999987
No 269
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=57.63 E-value=32 Score=25.47 Aligned_cols=52 Identities=10% Similarity=0.151 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCceEEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCCCC
Q 046192 20 DRKLIERLLKTSSYQVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM 76 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~ 76 (187)
..+.|.+.|+..||+|... -+..+..+.+...... .+...|++++=+.-.|.
T Consensus 42 D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~-----~~~~~d~~v~~~lsHG~ 95 (250)
T 2j32_A 42 DAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKE-----DHSKRSSFVCVLLSHGE 95 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTS-----CCTTEEEEEEEEESCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHh-----hccCCCEEEEEECCCCC
Confidence 6788999999999999875 3555666666443321 23457777766655543
No 270
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=57.62 E-value=41 Score=24.91 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=50.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCC-CHH-HHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM-TGY-DLLRK 84 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~-~g~-~~~~~ 84 (187)
..+|||.+...-....+...|.+.|+.|..+ .+...+.+.+..... .....+.++..++.+. +.. .+++.
T Consensus 12 ~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~~~Dl~~~~~~v~~~~~~ 84 (311)
T 3o26_A 12 RRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKN-------SNHENVVFHQLDVTDPIATMSSLADF 84 (311)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-------TTCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCCceEEEEccCCCcHHHHHHHHHH
Confidence 4578888988888888888888889888764 444433332222111 1111244555555554 433 46677
Q ss_pred HHhhcCCCCCcEEEEeCC
Q 046192 85 IKESASLKDIPVVIMSSE 102 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~ 102 (187)
+.+... .+-+++..+.
T Consensus 85 ~~~~~g--~iD~lv~nAg 100 (311)
T 3o26_A 85 IKTHFG--KLDILVNNAG 100 (311)
T ss_dssp HHHHHS--SCCEEEECCC
T ss_pred HHHhCC--CCCEEEECCc
Confidence 766544 5667776554
No 271
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=57.54 E-value=52 Score=23.87 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCceEEEeCCH---H---HHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCC
Q 046192 21 RKLIERLLKTSSYQVTAVDSG---N---KALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDI 94 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~~~~---~---~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~ 94 (187)
...+.+.+++.||.+..+... . +.++.+. ...+|-+|+-...+ .+.++.+++. ++
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-----------~~~vdgiIi~~~~~----~~~~~~l~~~----~i 86 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIG-----------SRGFDGLILQSFSN----PQTVQEILHQ----QM 86 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHH-----------TTTCSEEEEESSCC----HHHHHHHHTT----SS
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH-----------hCCCCEEEEecCCc----HHHHHHHHHC----CC
Confidence 344555556678877764322 2 2333332 23455555543322 4455555542 56
Q ss_pred cEEEEeC
Q 046192 95 PVVIMSS 101 (187)
Q Consensus 95 ~iI~ls~ 101 (187)
|+|++..
T Consensus 87 PvV~i~~ 93 (276)
T 3jy6_A 87 PVVSVDR 93 (276)
T ss_dssp CEEEESC
T ss_pred CEEEEec
Confidence 7776654
No 272
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=57.50 E-value=7.8 Score=26.71 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=45.0
Q ss_pred cccEEEEeccCCC-CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCC---CceeeCCCChHHHHHHHHHHhh
Q 046192 63 QVNLIITDYCMPG-MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGA---EEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 63 ~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga---~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
..|+||.++.-|+ +.++|+--.... +.||+++........ ..++-.|. ..+-.++++..+|...+.+...
T Consensus 68 ~aD~vvA~l~~~d~Gt~~EiG~A~al-----gkPV~~l~~~~~~~~-ls~mi~G~~~~~~~~~~~Y~~~el~~il~~f~~ 141 (152)
T 4fyk_A 68 QADVVVAEVTQPSLGVGYELGRAVAL-----GKPILCLFRPQSGRV-LSAMIRGAADGSRFQVWDYAEGEVETMLDRYFE 141 (152)
T ss_dssp HCSEEEEECSSCCHHHHHHHHHHHHT-----TCCEEEEECGGGSCC-CCHHHHHHCCSSSEEEEECCTTCHHHHHHHHHC
T ss_pred HCCEEEEeCCCCCCCHHHHHHHHHHc-----CCeEEEEEeCCccch-hHHHHcCCCCCCeEEEEEecHHHHHHHHHHHHH
Confidence 4679999888665 456666655543 678999876432112 22233333 3477888888888888887775
Q ss_pred h
Q 046192 139 G 139 (187)
Q Consensus 139 ~ 139 (187)
.
T Consensus 142 ~ 142 (152)
T 4fyk_A 142 A 142 (152)
T ss_dssp -
T ss_pred h
Confidence 5
No 273
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=57.20 E-value=39 Score=25.95 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=58.9
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhC-CceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTS-SYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~-~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
.++++||-||+--..-+......+... +++++. +....+..+.+.... ...-+.-| .
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~----------g~~~~y~d-----------~ 78 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRF----------SVPHAFGS-----------Y 78 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHH----------TCSEEESS-----------H
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------CCCeeeCC-----------H
Confidence 355699999999877766555556554 677765 443333333332110 01011212 1
Q ss_pred HHHHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHH
Q 046192 83 RKIKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKP 134 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~ 134 (187)
+.+-+. + ++-+|+++.. ...+.+..|+++|-+=|+-||+. .++..+.++
T Consensus 79 ~ell~~-~--~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 131 (350)
T 4had_A 79 EEMLAS-D--VIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIA 131 (350)
T ss_dssp HHHHHC-S--SCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHH
T ss_pred HHHhcC-C--CCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHH
Confidence 222222 1 4556666554 34577889999999999999984 444444443
No 274
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=57.12 E-value=70 Score=25.23 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=29.6
Q ss_pred CCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 93 DIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 93 ~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+|+|++....+.. +..+.| ..++..+ +.++|.+++..++..
T Consensus 320 g~PvV~~~~~~~~~---e~v~~g-~~~lv~~-d~~~l~~ai~~ll~~ 361 (403)
T 3ot5_A 320 GVPVLVLRDTTERP---EGIEAG-TLKLIGT-NKENLIKEALDLLDN 361 (403)
T ss_dssp TCCEEECCSSCSCH---HHHHHT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred CCCEEEecCCCcch---hheeCC-cEEEcCC-CHHHHHHHHHHHHcC
Confidence 88999874433332 235677 5677766 899999999888754
No 275
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=57.11 E-value=38 Score=24.69 Aligned_cols=53 Identities=11% Similarity=0.262 Sum_probs=39.3
Q ss_pred EEEEeccCCC---CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 66 LIITDYCMPG---MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 66 lvi~d~~~~~---~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+.+.|..-.+ ..-.++++.+++.. ++|+++-..-.+.+.+..++..||+..++
T Consensus 52 i~v~d~~~~~~~~~~~~~~i~~i~~~~---~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 52 ILLTSIDRDGTKSGYDTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EEEEETTTTTCSSCCCHHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred EEEEecCcccCCCcccHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 4455654321 23367888888764 78999988888889999999999887654
No 276
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=57.02 E-value=28 Score=27.95 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=29.2
Q ss_pred CCcEEEEeCC--CChhHHHHHHHhC------CCceeeCCCC--hHHHHHHHHHHh
Q 046192 93 DIPVVIMSSE--NIPSRINRCLEEG------AEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 93 ~~~iI~ls~~--~~~~~~~~a~~~g------a~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
++-+|+++.. ...+.+..|+++| -+=|+-||+. .++..+.++.+.
T Consensus 89 ~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~ 143 (438)
T 3btv_A 89 TIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAA 143 (438)
T ss_dssp SCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHH
Confidence 4556666554 3456677888999 7888899975 555555554443
No 277
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=56.89 E-value=20 Score=30.10 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=42.1
Q ss_pred cccEEEEeccCCCCC-HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 63 QVNLIITDYCMPGMT-GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~-g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
..|++++|....... -++.++++++..| +++|| ...-.+.+-....+++||+..
T Consensus 293 GvD~iviD~ahGhs~~v~~~i~~ik~~~p--~~~vi-aGNVaT~e~a~~Li~aGAD~v 347 (556)
T 4af0_A 293 GLDVVVLDSSQGNSVYQIEFIKWIKQTYP--KIDVI-AGNVVTREQAAQLIAAGADGL 347 (556)
T ss_dssp TCCEEEECCSCCCSHHHHHHHHHHHHHCT--TSEEE-EEEECSHHHHHHHHHHTCSEE
T ss_pred CCcEEEEeccccccHHHHHHHHHHHhhCC--cceEE-eccccCHHHHHHHHHcCCCEE
Confidence 478999999776543 5679999999886 77766 455567888888999999875
No 278
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=56.60 E-value=62 Score=24.44 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=24.9
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhCC--ceEEE
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSS--YQVTA 37 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~~--~~v~~ 37 (187)
|+...++|||.+..-.+...+...|.+.| +.|..
T Consensus 20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~ 55 (346)
T 4egb_A 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIIN 55 (346)
T ss_dssp ----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEE
T ss_pred cccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEE
Confidence 44556799999999999999888887777 56654
No 279
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=56.59 E-value=0.68 Score=34.30 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=21.7
Q ss_pred chhhhhhcccccccCCCCCCCccC
Q 046192 163 ADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 163 ~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
...++.+|.+++.++.+|+|++||
T Consensus 173 ~~~Lt~re~~vl~~~~~G~s~~eI 196 (237)
T 3szt_A 173 NVRLTARETEMLKWTAVGKTYGEI 196 (237)
T ss_dssp GCCCCHHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHH
Confidence 456899999999999999999987
No 280
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=56.58 E-value=14 Score=26.68 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=9.6
Q ss_pred EEEeccCCCCCHHHHHHHHHhh
Q 046192 67 IITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 67 vi~d~~~~~~~g~~~~~~l~~~ 88 (187)
+++|+.+.+ .+..+++.+.+.
T Consensus 62 i~ld~~l~d-~p~~~~~~~~~a 82 (218)
T 3jr2_A 62 LVCDMKTTD-GGAILSRMAFEA 82 (218)
T ss_dssp EEEEEEECS-CHHHHHHHHHHH
T ss_pred EEEEEeecc-cHHHHHHHHHhc
Confidence 445555442 233445555444
No 281
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=56.35 E-value=7.5 Score=27.54 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=24.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCH
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSG 41 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~ 41 (187)
|+|+|........+.+.|++.|..+..+...
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~ 34 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRND 34 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCC
Confidence 8999987776777889999889877766543
No 282
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=56.35 E-value=31 Score=25.30 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=37.8
Q ss_pred cccEEEEeccCCCCCH-------HHHHHHHHhhcC--CCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 63 QVNLIITDYCMPGMTG-------YDLLRKIKESAS--LKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g-------~~~~~~l~~~~~--~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
.+|.|++-..-|+..| ++-++.+|+... ..+.+ |.+...-+.+.+..+.++||+.++.=
T Consensus 128 ~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~-I~VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 128 KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYE-IEVDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCE-EEEESCCSTTTHHHHHHHTCCEEEEC
T ss_pred cCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCce-EEEECCcCHHHHHHHHHcCCCEEEEc
Confidence 4778876555565433 445555655431 01344 44566667888999999999988765
No 283
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=56.01 E-value=58 Score=25.04 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=54.3
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC-ceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 10 HVLAVDDSIIDRKLIERLLK----TSS-YQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~----~~~-~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
.|||-|+|....-.+...++ ..+ ..+. .+.+.+++.+.+.. .+|+|.+|-..| -++-+
T Consensus 180 ~vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a------------GaDiImLDn~s~----~~l~~ 243 (300)
T 3l0g_A 180 GVLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSN------------NVDMILLDNMSI----SEIKK 243 (300)
T ss_dssp CEEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT------------TCSEEEEESCCH----HHHHH
T ss_pred eEEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc------------CCCEEEECCCCH----HHHHH
Confidence 36676776554433333332 222 3343 48889999888842 367999996433 22222
Q ss_pred HHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 84 KIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
.++... .-..+..|..-+.+.+.+....|+|.+
T Consensus 244 av~~~~---~~v~leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 244 AVDIVN---GKSVLEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp HHHHHT---TSSEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred HHHhhc---CceEEEEECCCCHHHHHHHHHcCCCEE
Confidence 222222 234666777778888888888888743
No 284
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=55.40 E-value=19 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
.+++++.+|+ . ++|+|+++...+. +..|+++||.--
T Consensus 50 ~~~~v~~ir~--~--~~Pivlm~y~~n~------i~~G~dg~iiPd 85 (240)
T 1viz_A 50 VLRMMSKVRR--F--LVPCVLEVSAIEA------IVPGFDLYFIPS 85 (240)
T ss_dssp HHHHHHHHTT--S--SSCEEEECSCGGG------CCSCCSEEEEEE
T ss_pred HHHHHHHhhC--c--CCCEEEecCcccc------ccCCCCEEEEcc
Confidence 5567777776 3 8999998876322 267999998763
No 285
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A 4afy_A 4ag0_A
Probab=55.04 E-value=12 Score=27.81 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=55.8
Q ss_pred HHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC---C-CHHHHHHHHHhhcCCCCCcEE
Q 046192 24 IERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG---M-TGYDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 24 l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~---~-~g~~~~~~l~~~~~~~~~~iI 97 (187)
.-..|+..|+.+.. +.++...+..+ ..-++|.|=+|-.+-. . ....+++.+.......+..+|
T Consensus 158 ~l~~L~~~G~~ialDDfG~g~ssl~~L-----------~~l~~d~iKiD~~~v~~~~~~~~~~~l~~ii~~~~~~~~~vi 226 (268)
T 3hv8_A 158 LTQGLATLHCQAAISQFGCSLNPFNAL-----------KHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSI 226 (268)
T ss_dssp HHHHHHHTTCEEEEEEETCSSSTTGGG-----------GTCCCSEEEECGGGGSSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHCCCEEEEeCCCCChHHHHHH-----------HhCCCCEEEECHHHHHhhhcChhHHHHHHHHHHHHHcCCCEE
Confidence 33445667887765 67777777777 3445679999965432 1 222344433222211144444
Q ss_pred EEeCCCChhHHHHHHHhCCC---c-eeeCCCChHH
Q 046192 98 IMSSENIPSRINRCLEEGAE---E-FFLKPVQLAD 128 (187)
Q Consensus 98 ~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~~~ 128 (187)
...-.+.+....+.+.|++ + |+.||...++
T Consensus 227 -aeGVEt~~~~~~l~~lG~~~~QG~~~~~P~~~~~ 260 (268)
T 3hv8_A 227 -VPFVESASVLATLWQAGATYIQGYYLQGPSQAMD 260 (268)
T ss_dssp -ECCCCSHHHHHHHHHHTCSEECSTTTCCCBSSCC
T ss_pred -EEeeCCHHHHHHHHHcCCCEeccCeecCCCcccc
Confidence 4566788888888899976 3 4778876554
No 286
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=54.87 E-value=74 Score=24.84 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
.+++++.+++.. ++|||....-.+.+.+.+++..||+...
T Consensus 196 ~~~~l~~i~~~~---~iPViaaGGI~~~~~~~~~l~~GAd~V~ 235 (369)
T 3bw2_A 196 LLSLLAQVREAV---DIPVVAAGGIMRGGQIAAVLAAGADAAQ 235 (369)
T ss_dssp HHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHhc---CceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 378888888753 7899988877789999999999988753
No 287
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=54.59 E-value=35 Score=24.46 Aligned_cols=79 Identities=9% Similarity=0.063 Sum_probs=48.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCce---EEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQ---VTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~---v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
..+|.-+|-++...+..++.++..|+. +.. ..+..+.+..+ ....||+|++|...+ +-..+++
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-----------~~~~fD~V~~d~~~~--~~~~~l~ 147 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-----------ANDSYQLVFGQVSPM--DLKALVD 147 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-----------CTTCEEEEEECCCTT--THHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-----------cCCCcCeEEEcCcHH--HHHHHHH
Confidence 458899999999999999999887654 544 34444432222 134699999997543 3334555
Q ss_pred HHHhhcCCCCCcEEEEeC
Q 046192 84 KIKESASLKDIPVVIMSS 101 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~ 101 (187)
.+.+... .-.++++.+
T Consensus 148 ~~~~~Lk--pGG~lv~dn 163 (221)
T 3dr5_A 148 AAWPLLR--RGGALVLAD 163 (221)
T ss_dssp HHHHHEE--EEEEEEETT
T ss_pred HHHHHcC--CCcEEEEeC
Confidence 5544332 223555543
No 288
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=54.59 E-value=50 Score=22.88 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCceEEEeC--CHHHHHHHHh
Q 046192 20 DRKLIERLLKTSSYQVTAVD--SGNKALEFLG 49 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~~~--~~~~a~~~l~ 49 (187)
..+.|...|+..||.|.... +..+..+.+.
T Consensus 59 D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~ 90 (167)
T 1pyo_A 59 DHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQ 90 (167)
T ss_dssp HHHHHHHHHHHTTEEEEEEESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHH
Confidence 67889999999999988753 4555555553
No 289
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=54.20 E-value=40 Score=25.54 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=27.3
Q ss_pred CCcEEEEeCCC--ChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHH
Q 046192 93 DIPVVIMSSEN--IPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPH 135 (187)
Q Consensus 93 ~~~iI~ls~~~--~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~ 135 (187)
++-+|+++... ..+.+..+++.|.+=++-||+. .++..+.++.
T Consensus 65 ~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~ 111 (319)
T 1tlt_A 65 SCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVEL 111 (319)
T ss_dssp TCSEEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred CCCEEEEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHH
Confidence 44455555543 3466778889998888889974 5554444433
No 290
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=54.15 E-value=60 Score=23.57 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=47.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH-hccCcccccccccccccEEEEeccCCCCCHH-HHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFL-GLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l-~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~l 85 (187)
..++||.....-....+...|.+.|+.|..+....+..+.+ ..... .+..+..++.+.+.+ ++++.+
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~D~~d~~~v~~~~~~~ 80 (263)
T 3ak4_A 12 GRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLEN-----------GGFAVEVDVTKRASVDAAMQKA 80 (263)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTT-----------CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----------CCeEEEEeCCCHHHHHHHHHHH
Confidence 46799999999999999999988899888754333333332 11110 233333444443333 355555
Q ss_pred HhhcCCCCCcEEEEeC
Q 046192 86 KESASLKDIPVVIMSS 101 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~ 101 (187)
.+... .+-+++-.+
T Consensus 81 ~~~~g--~iD~lv~~A 94 (263)
T 3ak4_A 81 IDALG--GFDLLCANA 94 (263)
T ss_dssp HHHHT--CCCEEEECC
T ss_pred HHHcC--CCCEEEECC
Confidence 55443 555666543
No 291
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=53.75 E-value=63 Score=23.73 Aligned_cols=88 Identities=11% Similarity=-0.022 Sum_probs=50.6
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLL 82 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~ 82 (187)
.....++||-+...-....+...|.+.|+.|... ....+..+.+...- ......+..+..++.+.+.+ .++
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~D~~d~~~v~~~~ 97 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAI-------AAAGGEAFAVKADVSQESEVEALF 97 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH-------HHTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHH-------HhcCCcEEEEECCCCCHHHHHHHH
Confidence 3345678888888888889999998889888763 32232222221100 01112355555555555444 366
Q ss_pred HHHHhhcCCCCCcEEEEeC
Q 046192 83 RKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~ 101 (187)
+.+.+... .+-+++..+
T Consensus 98 ~~~~~~~g--~id~lv~nA 114 (269)
T 4dmm_A 98 AAVIERWG--RLDVLVNNA 114 (269)
T ss_dssp HHHHHHHS--CCCEEEECC
T ss_pred HHHHHHcC--CCCEEEECC
Confidence 66666543 566776554
No 292
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=53.59 E-value=55 Score=23.73 Aligned_cols=84 Identities=12% Similarity=-0.010 Sum_probs=46.8
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHH-HHhccCcccccccccccccEEEEeccCCCCCHH-HHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALE-FLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLL 82 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~-~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~ 82 (187)
.....++||-....-....+...|.+.|+.|..+....+..+ ..... ...+..+..++.+.+.. .++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~~~Dv~~~~~v~~~~ 72 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----------GAAVRFRNADVTNEADATAAL 72 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------------CEEEECCTTCHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----------CCceEEEEccCCCHHHHHHHH
Confidence 444567889999988899999999889988876532222212 11111 11234444444444333 466
Q ss_pred HHHHhhcCCCCCcEEEEeC
Q 046192 83 RKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~ 101 (187)
+.+.+... .+-+++-.+
T Consensus 73 ~~~~~~~g--~id~lv~nA 89 (257)
T 3tpc_A 73 AFAKQEFG--HVHGLVNCA 89 (257)
T ss_dssp HHHHHHHS--CCCEEEECC
T ss_pred HHHHHHcC--CCCEEEECC
Confidence 66666543 566766544
No 293
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=53.39 E-value=57 Score=23.09 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=29.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALE 46 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~ 46 (187)
..+|+|.+...-....+...|.+.|+.|..+....+.++
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~ 43 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQ 43 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 357899999999999999999888998887543333333
No 294
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=53.17 E-value=46 Score=21.98 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
.++++.+++. ..++.++|+.........+-..|...|+..
T Consensus 42 ~~~l~~l~~~----g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~ 81 (162)
T 2p9j_A 42 GIGIKLLQKM----GITLAVISGRDSAPLITRLKELGVEEIYTG 81 (162)
T ss_dssp HHHHHHHHTT----TCEEEEEESCCCHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHC----CCEEEEEeCCCcHHHHHHHHHcCCHhhccC
Confidence 3678888764 578999998876666666667888888754
No 295
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=53.07 E-value=21 Score=27.60 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=42.5
Q ss_pred ccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCCh--HHHHHHHHHHhhh
Q 046192 62 IQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQL--ADVNKLKPHLMKG 139 (187)
Q Consensus 62 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~--~~l~~~i~~~~~~ 139 (187)
.++|+|++|+- ..+|...++..|... + .+.+..++..|...|++|=+.+ +++.+.++.+...
T Consensus 159 ~~~D~ivcDig--eSs~~~~ve~~Rtl~------v--------Lel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~ 222 (321)
T 3lkz_A 159 ECCDTLLCDIG--ESSSSAEVEEHRTIR------V--------LEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRR 222 (321)
T ss_dssp CCCSEEEECCC--CCCSCHHHHHHHHHH------H--------HHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECc--cCCCChhhhhhHHHH------H--------HHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHH
Confidence 45889999987 555555555555432 1 4566777877877899997777 6666666666655
Q ss_pred h
Q 046192 140 I 140 (187)
Q Consensus 140 ~ 140 (187)
.
T Consensus 223 f 223 (321)
T 3lkz_A 223 Y 223 (321)
T ss_dssp H
T ss_pred h
Confidence 3
No 296
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=52.67 E-value=67 Score=23.67 Aligned_cols=83 Identities=10% Similarity=-0.017 Sum_probs=48.0
Q ss_pred CCceEEEEEeCCH--HHHHHHHHHHHhCCceEEEeCCH--HHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-H
Q 046192 6 DSQFHVLAVDDSI--IDRKLIERLLKTSSYQVTAVDSG--NKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-D 80 (187)
Q Consensus 6 ~~~~~ilivd~~~--~~~~~l~~~l~~~~~~v~~~~~~--~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~ 80 (187)
.+..+++|.+-.. =....+...|.+.|+.|..+... .+.++.+....+ .+.++-.++.+.+.+ +
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~-----------~~~~~~~Dl~~~~~v~~ 92 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFN-----------PAAVLPCDVISDQEIKD 92 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGC-----------CSEEEECCTTCHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcC-----------CceEEEeecCCHHHHHH
Confidence 3345778888553 36777888887889888765332 355555533221 144444444454433 4
Q ss_pred HHHHHHhhcCCCCCcEEEEeC
Q 046192 81 LLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~ 101 (187)
+++.+.+... .+-+++..+
T Consensus 93 ~~~~~~~~~g--~id~li~nA 111 (280)
T 3nrc_A 93 LFVELGKVWD--GLDAIVHSI 111 (280)
T ss_dssp HHHHHHHHCS--SCCEEEECC
T ss_pred HHHHHHHHcC--CCCEEEECC
Confidence 6677766654 566776554
No 297
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=52.47 E-value=81 Score=24.57 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=47.8
Q ss_pred cccccEEEEeccCCCCCHHHHHHHHHhhc--CCCCCcEEEEeCCCChhHHHHHHHhCCCceee-CCCChHHHHHHHHHH
Q 046192 61 VIQVNLIITDYCMPGMTGYDLLRKIKESA--SLKDIPVVIMSSENIPSRINRCLEEGAEEFFL-KPVQLADVNKLKPHL 136 (187)
Q Consensus 61 ~~~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~-kP~~~~~l~~~i~~~ 136 (187)
...+|.|++|..-.-.+--.+...++... ++...++++=+...+...+..+++.|+++.+. |--+.+++..+...+
T Consensus 61 ~~GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~saee~~~~~~~~ 139 (339)
T 1izc_A 61 ATKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEM 139 (339)
T ss_dssp HTCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 34578999999765555444555454332 11125555544555778899999999998644 444577776665554
No 298
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=52.35 E-value=54 Score=22.54 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=30.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHh--CCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEecc
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKT--SSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC 72 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~--~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~ 72 (187)
..+|+++|-|+.. .+...+.. .++.+..+.. ....+.+... ...+|+||+|..
T Consensus 30 g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l---------~~~yD~viiD~~ 84 (206)
T 4dzz_A 30 GYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKD---------LADYDFAIVDGA 84 (206)
T ss_dssp TCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHH---------TTTSSEEEEECC
T ss_pred CCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHh---------cCCCCEEEEECC
Confidence 4689999988643 34455533 2456655543 3333333222 234889999974
No 299
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=52.33 E-value=1.1e+02 Score=26.87 Aligned_cols=108 Identities=8% Similarity=0.153 Sum_probs=68.8
Q ss_pred ceEEEEEeCCH----------HHHHHHHHHHHhCCc--eEEEeC---C---HHHHHHHHhccCcccccccccccccEEEE
Q 046192 8 QFHVLAVDDSI----------IDRKLIERLLKTSSY--QVTAVD---S---GNKALEFLGLLNEDEQTNSQVIQVNLIIT 69 (187)
Q Consensus 8 ~~~ilivd~~~----------~~~~~l~~~l~~~~~--~v~~~~---~---~~~a~~~l~~~~~~~~~~~~~~~~dlvi~ 69 (187)
..+++|+++.+ .....+....++.+. .|.... + .++....+.. ..|++++
T Consensus 603 ~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~------------aaDvfV~ 670 (816)
T 3s28_A 603 LANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD------------TKGAFVQ 670 (816)
T ss_dssp HCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHH------------TTCEEEE
T ss_pred CeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHh------------cCeEEEE
Confidence 36778888877 255667777776663 344332 2 2344444421 1346665
Q ss_pred eccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 70 DYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 70 d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
-. ....-|..+++.+.. .+|||.. .. .-..+.+..|.++++..|.+.+++.+++..++
T Consensus 671 PS-~~EgfglvllEAMA~-----G~PVIas-d~---GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL 728 (816)
T 3s28_A 671 PA-LYEAFGLTVVEAMTC-----GLPTFAT-CK---GGPAEIIVHGKSGFHIDPYHGDQAADTLADFF 728 (816)
T ss_dssp CC-SCBSSCHHHHHHHHT-----TCCEEEE-SS---BTHHHHCCBTTTBEEECTTSHHHHHHHHHHHH
T ss_pred CC-CccCccHHHHHHHHc-----CCCEEEe-CC---CChHHHHccCCcEEEeCCCCHHHHHHHHHHHH
Confidence 43 345567788888765 7788864 32 23344556788999999999999999987765
No 300
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=52.16 E-value=54 Score=25.53 Aligned_cols=44 Identities=9% Similarity=0.265 Sum_probs=28.2
Q ss_pred CCcEEEEe--CCCChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHH
Q 046192 93 DIPVVIMS--SENIPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHL 136 (187)
Q Consensus 93 ~~~iI~ls--~~~~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~ 136 (187)
++-+|+++ .....+.+..|+++|.+=++-||+ +.++..+.++.+
T Consensus 83 ~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a 130 (383)
T 3oqb_A 83 NDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLA 130 (383)
T ss_dssp SCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHH
T ss_pred CCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHH
Confidence 34444443 345677788888999888888987 444555554443
No 301
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=52.06 E-value=68 Score=24.47 Aligned_cols=56 Identities=9% Similarity=0.138 Sum_probs=44.0
Q ss_pred cEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 65 dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
.+|.+|..- .....++++.+++... ..+|+++=..-.+.+.+.+++..||+..+.-
T Consensus 201 ~lV~LD~~~-~~v~~e~V~~I~~~~~-~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVG 256 (286)
T 3vk5_A 201 HMVYLYSRN-EHVPPEVVRHFRKGLG-PDQVLFVSGNVRSGRQVTEYLDSGADYVGFA 256 (286)
T ss_dssp SEEEEECSS-SCCCHHHHHHHHHHSC-TTCEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CEEEEcCCC-CcCCHHHHHHHHHhcC-CCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 589999755 3445689999988641 1578988777789999999999999988765
No 302
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=51.90 E-value=68 Score=23.56 Aligned_cols=88 Identities=10% Similarity=0.036 Sum_probs=48.5
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLL 82 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~ 82 (187)
+....++||-....-....+...|.+.|+.|... ....+..+.+...- ......+..+..++.+.+.+ .++
T Consensus 24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~Dl~~~~~v~~~~ 96 (267)
T 3u5t_A 24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKI-------EAAGGKALTAQADVSDPAAVRRLF 96 (267)
T ss_dssp ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHH-------HHTTCCEEEEECCTTCHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH-------HhcCCeEEEEEcCCCCHHHHHHHH
Confidence 3445678899998888888999998889888764 32222222221100 01112355555555554443 366
Q ss_pred HHHHhhcCCCCCcEEEEeC
Q 046192 83 RKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~ 101 (187)
+.+.+... .+-+++-.+
T Consensus 97 ~~~~~~~g--~iD~lvnnA 113 (267)
T 3u5t_A 97 ATAEEAFG--GVDVLVNNA 113 (267)
T ss_dssp HHHHHHHS--CEEEEEECC
T ss_pred HHHHHHcC--CCCEEEECC
Confidence 66666543 555665543
No 303
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=51.78 E-value=77 Score=24.11 Aligned_cols=105 Identities=13% Similarity=0.237 Sum_probs=52.4
Q ss_pred CCceEEEEEeCCHHHHHHHHHHH-HhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLL-KTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l-~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 83 (187)
+.+++|.||+--..-...+..+. ...+++++. +....+..+.+.... ..+-+.- + .+
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~----------g~~~~~~-------~----~~ 64 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL----------GVETTYT-------N----YK 64 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT----------CCSEEES-------C----HH
T ss_pred CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh----------CCCcccC-------C----HH
Confidence 44689999998766555444444 234677654 444344333332110 0111111 1 12
Q ss_pred HHHhhcCCCCCcEEEEeCCC--ChhHHHHHHHhCCCceeeCCCC--hHHHHHHHH
Q 046192 84 KIKESASLKDIPVVIMSSEN--IPSRINRCLEEGAEEFFLKPVQ--LADVNKLKP 134 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~~~--~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~ 134 (187)
.+-+. + .+-+|+++... ..+.+..+++.|.+=++-||+. .++..+..+
T Consensus 65 ~~l~~-~--~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~ 116 (346)
T 3cea_A 65 DMIDT-E--NIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAK 116 (346)
T ss_dssp HHHTT-S--CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHH
T ss_pred HHhcC-C--CCCEEEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHH
Confidence 22221 1 34455554432 3456677788887777788864 445444433
No 304
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=51.67 E-value=14 Score=28.35 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=28.5
Q ss_pred CCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHh
Q 046192 93 DIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 93 ~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
++-+|+++.. ...+.+..+++.|.+=++-||+. .++..+.++.+.
T Consensus 67 ~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~ 115 (329)
T 3evn_A 67 SIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAE 115 (329)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHH
Confidence 4445555443 34556778889999888999974 555555444433
No 305
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=51.66 E-value=66 Score=23.33 Aligned_cols=83 Identities=7% Similarity=-0.007 Sum_probs=51.2
Q ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC-CHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHHH
Q 046192 6 DSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD-SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLR 83 (187)
Q Consensus 6 ~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~ 83 (187)
....++||.....-....+...|.+.|+.|..+. +.+.+.+......+ .+..+..++.+.+.+ .+++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~v~~~~~ 74 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGP-----------AAYAVQMDVTRQDSIDAAIA 74 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------TEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC-----------CceEEEeeCCCHHHHHHHHH
Confidence 3456789999998889999999988899887754 44443333322211 244444445554443 3666
Q ss_pred HHHhhcCCCCCcEEEEeC
Q 046192 84 KIKESASLKDIPVVIMSS 101 (187)
Q Consensus 84 ~l~~~~~~~~~~iI~ls~ 101 (187)
.+.+... .+-+++-.+
T Consensus 75 ~~~~~~g--~id~lv~~A 90 (259)
T 4e6p_A 75 ATVEHAG--GLDILVNNA 90 (259)
T ss_dssp HHHHHSS--SCCEEEECC
T ss_pred HHHHHcC--CCCEEEECC
Confidence 6666554 566776554
No 306
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=51.66 E-value=51 Score=22.96 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=25.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSG 41 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~ 41 (187)
++|+|||.-..+-..+.+.|++.|+.+..+...
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~ 33 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH 33 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC
Confidence 378999977667788899999889877766543
No 307
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=51.65 E-value=32 Score=27.56 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=38.9
Q ss_pred cccEEEEeccCCCCC-HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMT-GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~-g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|+|++|....... -.++++.+++.. ++||++ ....+.+.+..+.++||+....
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~---~i~Vi~-g~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIV-GNVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTC---CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcC---CCeEEE-eecCCHHHHHHHHHcCCCEEEE
Confidence 467999997654332 257788887753 567765 2234688899999999998876
No 308
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=51.63 E-value=37 Score=23.80 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=28.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHH
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALE 46 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~ 46 (187)
+|||.+..-.....+...|.+.|+.|..+....+...
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 38 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAA 38 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 6899999988898888888888998887543333333
No 309
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=51.24 E-value=72 Score=23.64 Aligned_cols=88 Identities=9% Similarity=0.019 Sum_probs=51.6
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH-hccCcccccccccccccEEEEeccCCCCCHH-HH
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFL-GLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DL 81 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l-~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~ 81 (187)
|.....++||.+...-....+...|.+.|+.|..+....+.++.+ .... .....+..+..++.+.+.+ .+
T Consensus 24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~--------~~~~~~~~~~~Dv~d~~~v~~~ 95 (283)
T 3v8b_A 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIV--------GAGGQAIALEADVSDELQMRNA 95 (283)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHT--------TTTCCEEEEECCTTCHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------hcCCcEEEEEccCCCHHHHHHH
Confidence 344456788999988888999999988899888754333333322 2111 1112355555555554443 46
Q ss_pred HHHHHhhcCCCCCcEEEEeC
Q 046192 82 LRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~ls~ 101 (187)
++.+.+... .+-+++..+
T Consensus 96 ~~~~~~~~g--~iD~lVnnA 113 (283)
T 3v8b_A 96 VRDLVLKFG--HLDIVVANA 113 (283)
T ss_dssp HHHHHHHHS--CCCEEEECC
T ss_pred HHHHHHHhC--CCCEEEECC
Confidence 666666543 566776544
No 310
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=51.23 E-value=38 Score=26.49 Aligned_cols=55 Identities=9% Similarity=0.104 Sum_probs=0.0
Q ss_pred ccEEEEeccCCCCC-HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 64 VNLIITDYCMPGMT-GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 64 ~dlvi~d~~~~~~~-g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+|++.++....... .++.++++++..+ ++||+ +..-.+.+.+..+.++|++....
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~--~~~vi-~g~v~t~e~A~~a~~aGaD~I~v 188 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFP--QHTIM-AGNVVTGEMVEELILSGADIIKV 188 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCT--TSEEE-EEEECSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcC--CCeEE-EEeCCCHHHHHHHHHhCCCEEEE
No 311
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=51.06 E-value=69 Score=23.35 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCCceEEEeC
Q 046192 21 RKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~~ 39 (187)
...+.+.+++.||.+..+.
T Consensus 27 ~~gi~~~a~~~g~~~~~~~ 45 (291)
T 3egc_A 27 ASGVESEARHKGYSVLLAN 45 (291)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 4456666677888887653
No 312
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=50.93 E-value=47 Score=24.97 Aligned_cols=48 Identities=8% Similarity=0.123 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCceEEEe--CCHHHHHHHHhccCcccccccccccccEEEEec
Q 046192 19 IDRKLIERLLKTSSYQVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY 71 (187)
Q Consensus 19 ~~~~~l~~~l~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~ 71 (187)
...+.|...|+..||+|... -+..+..+.+...... .+...|++++=+
T Consensus 49 ~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~-----~h~~~d~~v~~i 98 (271)
T 3h11_B 49 LDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLM-----DHSNMDCFICCI 98 (271)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHS-----CCTTCSCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHh-----cCCCCCEEEEEE
Confidence 45788999999999999875 3555666666443211 234567666555
No 313
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=50.89 E-value=43 Score=20.95 Aligned_cols=117 Identities=14% Similarity=0.162 Sum_probs=66.2
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCccccccccccccc-EEEEeccCCCCCHHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVN-LIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~d-lvi~d~~~~~~~g~~~~~~l~ 86 (187)
.+-|||-.++......+..-.+..||.|..+++.++.-..+...... ..|. ++|+.-+- .---+.++.|.
T Consensus 2 kililintnndelikkikkevenqgyqvrdvndsdelkkemkklaee-------knfekiliisndk--qllkemlelis 72 (134)
T 2lci_A 2 KILILINTNNDELIKKIKKEVENQGYQVRDVNDSDELKKEMKKLAEE-------KNFEKILIISNDK--QLLKEMLELIS 72 (134)
T ss_dssp CCEEEEECSCHHHHHHHHHHTTTTTCEEEEECSHHHHHHHHHHHHHC-------CSCCCEEEEESCH--HHHHHHHHHHH
T ss_pred eEEEEEcCCcHHHHHHHHHHHHccCeeeeecCchHHHHHHHHHHHhh-------cCcceEEEEcCcH--HHHHHHHHHHH
Confidence 45678888888888889888888899999999998876665433221 1222 44443210 00123444555
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHH-HHhCCCce-eeCCCChHHHHHHHHHHh
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRC-LEEGAEEF-FLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a-~~~ga~~y-l~kP~~~~~l~~~i~~~~ 137 (187)
+.+ -.+.++-...+.....+. ......+| +.|-.+.++-...++...
T Consensus 73 klg----ykvflllqdqdeneleefkrkiesqgyevrkvtddeealkivrefm 121 (134)
T 2lci_A 73 KLG----YKVFLLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVREFM 121 (134)
T ss_dssp HHT----CCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHHHH
T ss_pred HhC----ceeEEEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHHHH
Confidence 543 234444333344443332 23345667 445555556555555554
No 314
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=50.67 E-value=25 Score=24.79 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
|.+.++.+++..+ ++|++....-. .+.+.+++..|++.+..
T Consensus 137 g~~~~~~l~~~~~--~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 137 GPQFVKAMKGPFP--NVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp HHHHHHHHHTTCT--TCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHHhCC--CCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 5677777777554 78888776654 67888999999998643
No 315
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=50.61 E-value=63 Score=23.44 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
.+.++.+++.. ++|+++-..-.+.+.+..++..||+..+.-
T Consensus 63 ~~~i~~i~~~~---~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 63 LELVEKVAEQI---DIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp HHHHHHHHTTC---CSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 45667777643 789998877788899999999999987654
No 316
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=50.45 E-value=82 Score=24.02 Aligned_cols=90 Identities=11% Similarity=0.060 Sum_probs=51.2
Q ss_pred EEEEeCCHHHHHHHHHHHH---hC--CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHH
Q 046192 11 VLAVDDSIIDRKLIERLLK---TS--SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRK 84 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~---~~--~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 84 (187)
|+|-|+|-...-.+...++ +. ...+. .+.+.+++.+.+.. .+|+|.+|-..| +-++.
T Consensus 172 vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~a------------GaD~I~LDn~~~-----~~l~~ 234 (287)
T 3tqv_A 172 YLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEVTNLDELNQAIAA------------KADIVMLDNFSG-----EDIDI 234 (287)
T ss_dssp EEECTTTC----CHHHHHHHHHHHCTTSCEEEEESSHHHHHHHHHT------------TCSEEEEESCCH-----HHHHH
T ss_pred EEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHc------------CCCEEEEcCCCH-----HHHHH
Confidence 6666666544433333332 11 23333 48899998888742 367999997433 22332
Q ss_pred HHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 85 IKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
..+... .-..+..|..-+.+.+.+....|+|.+
T Consensus 235 av~~~~--~~v~ieaSGGIt~~~i~~~a~tGVD~I 267 (287)
T 3tqv_A 235 AVSIAR--GKVALEVSGNIDRNSIVAIAKTGVDFI 267 (287)
T ss_dssp HHHHHT--TTCEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred HHHhhc--CCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 222211 223555777778888888888898754
No 317
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=50.31 E-value=78 Score=24.41 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=43.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-CceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC-----CHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTS-SYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM-----TGYD 80 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~-----~g~~ 80 (187)
..+|..||=++...+..++.+... +-.+. ...++.+.+... ....||+|++|...+.. ...+
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~-----------~~~~fDvIi~D~~~~~~~~~~L~t~e 181 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF-----------TPASRDVIIRDVFAGAITPQNFTTVE 181 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC-----------CTTCEEEEEECCSTTSCCCGGGSBHH
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc-----------cCCCCCEEEECCCCccccchhhhHHH
Confidence 347888899988888777777432 22233 355665544332 23469999999765532 1246
Q ss_pred HHHHHHhhc
Q 046192 81 LLRKIKESA 89 (187)
Q Consensus 81 ~~~~l~~~~ 89 (187)
+++.+++..
T Consensus 182 fl~~~~r~L 190 (317)
T 3gjy_A 182 FFEHCHRGL 190 (317)
T ss_dssp HHHHHHHHE
T ss_pred HHHHHHHhc
Confidence 777766654
No 318
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=50.19 E-value=91 Score=24.50 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEE
Q 046192 19 IDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVI 98 (187)
Q Consensus 19 ~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ 98 (187)
.....|.+.-+..|..+.+..-..++++.+.... +=++-+-..++.-+.+++.+.+. +.|||+
T Consensus 78 e~~~~L~~~~~~~Gi~~~st~fD~~svd~l~~~~-------------v~~~KI~S~~~~N~pLL~~va~~----gKPviL 140 (350)
T 3g8r_A 78 EQMQKLVAEMKANGFKAICTPFDEESVDLIEAHG-------------IEIIKIASCSFTDWPLLERIARS----DKPVVA 140 (350)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT-------------CCEEEECSSSTTCHHHHHHHHTS----CSCEEE
T ss_pred HHHHHHHHHHHHcCCcEEeccCCHHHHHHHHHcC-------------CCEEEECcccccCHHHHHHHHhh----CCcEEE
Confidence 3445566677778987777655666777775432 22455556678888999998864 679999
Q ss_pred EeCCCChhHHHHHHH
Q 046192 99 MSSENIPSRINRCLE 113 (187)
Q Consensus 99 ls~~~~~~~~~~a~~ 113 (187)
=+..++.+.+..|.+
T Consensus 141 stGmstl~Ei~~Ave 155 (350)
T 3g8r_A 141 STAGARREDIDKVVS 155 (350)
T ss_dssp ECTTCCHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHH
Confidence 999888888777654
No 319
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=50.16 E-value=62 Score=22.56 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=50.3
Q ss_pred CCCceEEEEEeCCHHH----------HHHHHHHHHhCCceEEEe--------------------CCHHHHHHHHhccCcc
Q 046192 5 TDSQFHVLAVDDSIID----------RKLIERLLKTSSYQVTAV--------------------DSGNKALEFLGLLNED 54 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~----------~~~l~~~l~~~~~~v~~~--------------------~~~~~a~~~l~~~~~~ 54 (187)
.....+|++++|.... ...+.+.|...++.+... .+..+.+..+...-
T Consensus 2 a~~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l-- 79 (215)
T 2vpt_A 2 ASKTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWL-- 79 (215)
T ss_dssp --CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHH--
T ss_pred CCCceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHh--
Confidence 4456899999998653 466777777666544322 12233333332100
Q ss_pred cccccccccccEEEEeccCCCC--------C-HHHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 55 EQTNSQVIQVNLIITDYCMPGM--------T-GYDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 55 ~~~~~~~~~~dlvi~d~~~~~~--------~-g~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
....||+|++.+-..+. . --.+++.+++..| ..+|++++-.
T Consensus 80 -----~~~~pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~~p--~~~ii~~~~~ 129 (215)
T 2vpt_A 80 -----NTHNPDVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTVKP--NVTLFVADYY 129 (215)
T ss_dssp -----HHHCCSEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCT--TCEEEEECCC
T ss_pred -----hccCCCEEEEEccccccCCCCChhHHHHHHHHHHHHHhCC--CCEEEEEeCC
Confidence 12346799987633221 1 1247778888766 7788877654
No 320
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=49.97 E-value=83 Score=24.96 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=29.3
Q ss_pred CCcEEEEeC--CCChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHh
Q 046192 93 DIPVVIMSS--ENIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 93 ~~~iI~ls~--~~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
++-+|+++. ....+.+..|+++|.+=|+-||+. .++..+.++.+.
T Consensus 110 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 158 (417)
T 3v5n_A 110 GIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAAD 158 (417)
T ss_dssp CCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHH
Confidence 344555443 345677888999999989999964 555555554443
No 321
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=49.82 E-value=68 Score=22.90 Aligned_cols=87 Identities=9% Similarity=0.049 Sum_probs=51.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH-hccCcccccccccccccEEEEeccCCCCCHH-HHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFL-GLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l-~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~l 85 (187)
..+++|.+...-....+...|.+.|+.|..+....+.++.+ ...... ......++.+|++..+.+.+ ++++.+
T Consensus 14 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~d~d~~~~~~~~~~~~~~ 88 (247)
T 3i1j_A 14 GRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSA-----GQPQPLIIALNLENATAQQYRELAARV 88 (247)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----TSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc-----CCCCceEEEeccccCCHHHHHHHHHHH
Confidence 46788999998889999999988899887754333322222 111100 11123355566655554443 466666
Q ss_pred HhhcCCCCCcEEEEeC
Q 046192 86 KESASLKDIPVVIMSS 101 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~ 101 (187)
.+... .+-+++..+
T Consensus 89 ~~~~g--~id~lv~nA 102 (247)
T 3i1j_A 89 EHEFG--RLDGLLHNA 102 (247)
T ss_dssp HHHHS--CCSEEEECC
T ss_pred HHhCC--CCCEEEECC
Confidence 66543 566776554
No 322
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=49.78 E-value=54 Score=24.73 Aligned_cols=51 Identities=10% Similarity=0.155 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCceEEEeC--CHHHHHHHHhccCcccccccccccccEEEEeccCC
Q 046192 19 IDRKLIERLLKTSSYQVTAVD--SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP 74 (187)
Q Consensus 19 ~~~~~l~~~l~~~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~ 74 (187)
...+.|...|+..||+|.... +..+..+.+....-. .+...|++++=+...
T Consensus 46 ~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~-----~h~~~d~~vv~ilSH 98 (278)
T 3od5_A 46 ADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTV-----SHADADCFVCVFLSH 98 (278)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHS-----CCTTBSCEEEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhh-----cccCCCEEEEEEECC
Confidence 567889999999999998753 555666655443211 244577666655333
No 323
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=49.74 E-value=80 Score=23.74 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=58.2
Q ss_pred EEEeCCHHHHHHHHHHHHhCCceEEE--eC-CHHHHHHHHhccCcccccccccccccEEEEeccCCCCC---------HH
Q 046192 12 LAVDDSIIDRKLIERLLKTSSYQVTA--VD-SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT---------GY 79 (187)
Q Consensus 12 livd~~~~~~~~l~~~l~~~~~~v~~--~~-~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~---------g~ 79 (187)
++.|=.+.-...+...+++.|..... ++ +..+-+..+.....+ .|.+= ...+.. -.
T Consensus 130 IipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~g-----------fiY~v-s~~GvTG~~~~~~~~~~ 197 (271)
T 3nav_A 130 LIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKG-----------YTYLL-SRAGVTGAETKANMPVH 197 (271)
T ss_dssp EETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCS-----------CEEEC-CCC--------CCHHHH
T ss_pred EECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCC-----------eEEEE-eccCCCCcccCCchhHH
Confidence 44454455566777788888865442 22 344555655433332 43331 121111 24
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
++++.+|+.. ++|+++=..-++.+.+.+++..||++.+.-.
T Consensus 198 ~~v~~vr~~~---~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 198 ALLERLQQFD---APPALLGFGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp HHHHHHHHTT---CCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 6788888754 6888875555678888879999999998753
No 324
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=49.64 E-value=75 Score=25.90 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=28.4
Q ss_pred CCcEEEEeCC--CChhHHHHHHHhC------CCceeeCCCC--hHHHHHHHHHHh
Q 046192 93 DIPVVIMSSE--NIPSRINRCLEEG------AEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 93 ~~~iI~ls~~--~~~~~~~~a~~~g------a~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
++-+|+++.. ...+.+..|+++| -+=|+-||+. .++..+.+..+.
T Consensus 108 ~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~ 162 (479)
T 2nvw_A 108 DIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQ 162 (479)
T ss_dssp TCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHH
Confidence 4556655543 3456677888999 7778899974 555555544443
No 325
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=49.62 E-value=92 Score=24.40 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=28.9
Q ss_pred CCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 93 DIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 93 ~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+|+|++...... .+..+.|+ .++..+ +.++|.+++..++..
T Consensus 326 G~PvV~~~~~~~~---~e~v~~G~-~~lv~~-d~~~l~~ai~~ll~d 367 (396)
T 3dzc_A 326 GKPVLVMRETTER---PEAVAAGT-VKLVGT-NQQQICDALSLLLTD 367 (396)
T ss_dssp TCCEEECCSSCSC---HHHHHHTS-EEECTT-CHHHHHHHHHHHHHC
T ss_pred CCCEEEccCCCcc---hHHHHcCc-eEEcCC-CHHHHHHHHHHHHcC
Confidence 7899975443332 34567775 466654 899999999888864
No 326
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=49.52 E-value=99 Score=24.73 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=54.7
Q ss_pred HHHHHHHHHhCCceEE--EeCCHHHHHHHHhccCcccccccccccccEEEEeccC-----------CCCCHHHHHHHHHh
Q 046192 21 RKLIERLLKTSSYQVT--AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM-----------PGMTGYDLLRKIKE 87 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~-----------~~~~g~~~~~~l~~ 87 (187)
.+.+..+-+..+..+. .+.+.+++..... .-+|.|++...- .+...+.++..+.+
T Consensus 173 ~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~------------aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~ 240 (400)
T 3ffs_A 173 IRTLKEIKSKMNIDVIVGNVVTEEATKELIE------------NGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSS 240 (400)
T ss_dssp HHHHHHHHTTCCCEEEEEEECSHHHHHHHHH------------TTCSEEEECC---------CCSCBCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEeecCCHHHHHHHHH------------cCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHH
Confidence 4444444443465554 3778777766653 236688773210 01234556666655
Q ss_pred hcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 88 SASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
.....++|||.-..-.+...+.+++.+||+...
T Consensus 241 ~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 241 VASKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp HHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred HHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 432237899988888889999999999999764
No 327
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=49.47 E-value=33 Score=26.02 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=57.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
++|.|+.........+.+.|++.|+++.......+. + ..+|+||+= |.|| .+++..+..
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~---~-------------~~~DlvIvl----GGDG-T~L~aa~~~ 88 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEE---L-------------ENFDFIVSV----GGDG-TILRILQKL 88 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGG---G-------------GGSSEEEEE----ECHH-HHHHHHTTC
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEccccccc---c-------------CCCCEEEEE----CCCH-HHHHHHHHh
Confidence 467777553322677888898889888765432111 1 135666643 4566 466666665
Q ss_pred cCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhh
Q 046192 89 ASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 89 ~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~ 138 (187)
.. . +||+-+.. |-.+|+. +++++++.+++..+.+
T Consensus 89 ~~-~-~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 89 KR-C-PPIFGINT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp SS-C-CCEEEEEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred CC-C-CcEEEECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 43 2 89998875 4456776 4666777777777765
No 328
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=49.36 E-value=60 Score=26.18 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=8.3
Q ss_pred ceEEEEEeCCH
Q 046192 8 QFHVLAVDDSI 18 (187)
Q Consensus 8 ~~~ilivd~~~ 18 (187)
..+|+++|-|+
T Consensus 129 G~kVllvd~D~ 139 (433)
T 2xxa_A 129 KKKVLVVSADV 139 (433)
T ss_dssp CCCEEEEECCC
T ss_pred CCeEEEEecCC
Confidence 46788888886
No 329
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=49.30 E-value=46 Score=20.82 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=19.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEE
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTA 37 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~ 37 (187)
+|||+.++......+-.+++..||.|..
T Consensus 53 kiliisndkqllkemlelisklgykvfl 80 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVFL 80 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeEE
Confidence 5677777777766666677667766654
No 330
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=49.12 E-value=1.1e+02 Score=24.96 Aligned_cols=110 Identities=9% Similarity=0.006 Sum_probs=65.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCce---EEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQ---VTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLL 82 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~---v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~ 82 (187)
..+++|++.+...+..+...+...|.. |... -+.++....+. ..|++++-... .-|..++
T Consensus 406 ~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~-------------~adv~v~ps~~--~~g~~~l 470 (568)
T 2vsy_A 406 DSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYR-------------HADLFLDTHPY--NAHTTAS 470 (568)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGG-------------GCSEEECCSSS--CCSHHHH
T ss_pred CcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHh-------------cCCEEeeCCCC--CCcHHHH
Confidence 467788884444567788888776643 4443 34456656652 25677655443 5677788
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChhH--HHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 83 RKIKESASLKDIPVVIMSSENIPSR--INRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~~~~~~~--~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
+.+.. .+|||.+........ ..-....|..+++.. +.+++.+.+..++..
T Consensus 471 EAma~-----G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~--~~~~la~~i~~l~~~ 522 (568)
T 2vsy_A 471 DALWT-----GCPVLTTPGETFAARVAGSLNHHLGLDEMNVA--DDAAFVAKAVALASD 522 (568)
T ss_dssp HHHHT-----TCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS--SHHHHHHHHHHHHHC
T ss_pred HHHhC-----CCCEEeccCCCchHHHHHHHHHHCCChhhhcC--CHHHHHHHHHHHhcC
Confidence 87764 788986433211111 111233477776654 788888888887754
No 331
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=49.11 E-value=75 Score=23.21 Aligned_cols=86 Identities=9% Similarity=0.029 Sum_probs=51.5
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC-CHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD-SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRK 84 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~ 84 (187)
...++||-....-....+...|.+.|+.|..+. +.+.+-+...... ......+..+..++.+.+.. .+++.
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~-------~~~~~~~~~~~~Dv~~~~~v~~~~~~ 91 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALG-------EQFGTDVHTVAIDLAEPDAPAELARR 91 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-------HHHCCCEEEEECCTTSTTHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-------HhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 345788888888888899999988898887754 4333322221110 00112355555555665554 46777
Q ss_pred HHhhcCCCCCcEEEEeC
Q 046192 85 IKESASLKDIPVVIMSS 101 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~ 101 (187)
+.+... .+-+++..+
T Consensus 92 ~~~~~g--~id~lv~nA 106 (266)
T 4egf_A 92 AAEAFG--GLDVLVNNA 106 (266)
T ss_dssp HHHHHT--SCSEEEEEC
T ss_pred HHHHcC--CCCEEEECC
Confidence 766654 566776654
No 332
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=49.08 E-value=1.1e+02 Score=25.22 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=30.0
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..+.+++ . ..+..-...+..+++.+ ..++++-.. +.+........|++..+.
T Consensus 192 ~a~~vi~-t-~~D~~n~~~~~~ar~~~---~~~iiar~~--~~~~~~~l~~~Gad~vi~ 243 (565)
T 4gx0_A 192 AARSIIA-N-LSDPDNANLCLTVRSLC---QTPIIAVVK--EPVHGELLRLAGANQVVP 243 (565)
T ss_dssp GCSEEEE-C-SCHHHHHHHHHHHHTTC---CCCEEEECS--SGGGHHHHHHHTCSEEEC
T ss_pred cCCEEEE-e-CCcHHHHHHHHHHHHhc---CceEEEEEC--CHHHHHHHHHcCCCEEEC
Confidence 4667777 2 22222334444555543 667766554 456666777889985544
No 333
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=48.93 E-value=71 Score=22.91 Aligned_cols=33 Identities=9% Similarity=-0.056 Sum_probs=27.5
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
...+|+|.....-....+...|.+.|+.|..+.
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~ 44 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIAD 44 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 446799999999999999999988899888753
No 334
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=48.92 E-value=89 Score=24.02 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCceEEEe--CCHHHHHHHHhccCcccccccccccccEEEEec
Q 046192 18 IIDRKLIERLLKTSSYQVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY 71 (187)
Q Consensus 18 ~~~~~~l~~~l~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~ 71 (187)
....+.|...|+..||+|... -+..+..+.+...... .+...|++++=+
T Consensus 83 ~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~-----dh~~~D~~vv~i 133 (310)
T 2nn3_C 83 NVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEM-----DHSDADCLLVAV 133 (310)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHSS-----CGGGBSCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHh-----ccCCCCEEEEEE
Confidence 566789999999999999875 3555665555443221 234566555444
No 335
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=48.88 E-value=91 Score=24.09 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=43.8
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.|++++-.. ...-|..+++.+.. .+|+|.... ....+.+..|..+++.. +.+++.+++..++..
T Consensus 316 ad~~v~ps~-~E~~~~~~lEAma~-----G~PvI~~~~----~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~~ 379 (416)
T 2x6q_A 316 SDVILQMSI-REGFGLTVTEAMWK-----GKPVIGRAV----GGIKFQIVDGETGFLVR--DANEAVEVVLYLLKH 379 (416)
T ss_dssp CSEEEECCS-SCSSCHHHHHHHHT-----TCCEEEESC----HHHHHHCCBTTTEEEES--SHHHHHHHHHHHHHC
T ss_pred CCEEEECCC-cCCCccHHHHHHHc-----CCCEEEccC----CCChhheecCCCeEEEC--CHHHHHHHHHHHHhC
Confidence 457766543 34556777777764 778875432 34555566677888886 899999999888764
No 336
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=48.85 E-value=83 Score=23.62 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee--CCCChHHHHHHHHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL--KPVQLADVNKLKPH 135 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~--kP~~~~~l~~~i~~ 135 (187)
++.++.+++.. ++||+.-.-.-+...+..|...||+..++ .-.+.+++.+.+..
T Consensus 102 ~~~l~~ir~~v---~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~ 157 (272)
T 3qja_A 102 LDDLDAVRASV---SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDR 157 (272)
T ss_dssp HHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHH
Confidence 77888888764 78998554344555589999999999876 34445555444433
No 337
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=48.82 E-value=64 Score=23.13 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred EEEEeC--CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-------HH
Q 046192 11 VLAVDD--SIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-------DL 81 (187)
Q Consensus 11 ilivd~--~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-------~~ 81 (187)
|.+-+. .........+.+...|..+...-......+.+....+. .|.|+++...|+..|. +.
T Consensus 95 v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~~---------~d~vl~~~~~pg~~g~~~~~~~~~~ 165 (230)
T 1rpx_A 95 VSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDA---------VDLVLIMSVNPGFGGQSFIESQVKK 165 (230)
T ss_dssp EEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTT---------CSEEEEESSCTTCSSCCCCTTHHHH
T ss_pred EEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhh---------CCEEEEEEEcCCCCCccccHHHHHH
Q ss_pred HHHHHhhc----CCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 82 LRKIKESA----SLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 82 ~~~l~~~~----~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
++.+++.. . +.|+++...-. .+.+.+++++||+.+..
T Consensus 166 i~~l~~~~~~~~~--~~pi~v~GGI~-~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 166 ISDLRKICAERGL--NPWIEVDGGVG-PKNAYKVIEAGANALVA 206 (230)
T ss_dssp HHHHHHHHHHHTC--CCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCC--CceEEEECCCC-HHHHHHHHHcCCCEEEE
No 338
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=48.79 E-value=96 Score=24.34 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCceEE--EeCCHHHHHHHHhccCcccccccccccccEEEEeccCC-----------CCCHHHHHHHHH
Q 046192 20 DRKLIERLLKTSSYQVT--AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-----------GMTGYDLLRKIK 86 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-----------~~~g~~~~~~l~ 86 (187)
+.+.++.+-+..+..+. .+.+.+++..... .-.|.|.+-..-. +...++.+..+.
T Consensus 133 ~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~------------aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~ 200 (361)
T 3khj_A 133 IIRTLKEIKSKMNIDVIVGNVVTEEATKELIE------------NGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCS 200 (361)
T ss_dssp HHHHHHHHHHHCCCEEEEEEECSHHHHHHHHH------------TTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEccCCCHHHHHHHHH------------cCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHH
Confidence 34455554444465554 3677777765552 2356777732110 122344455553
Q ss_pred hhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 87 ESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
+.....++|||.-..-.+...+.+++.+||+...
T Consensus 201 ~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~ 234 (361)
T 3khj_A 201 SVASKFGIPIIADGGIRYSGDIGKALAVGASSVM 234 (361)
T ss_dssp HHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred HHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 3211116899988777789999999999999764
No 339
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=48.70 E-value=58 Score=23.04 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-------HHHH
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-------DLLR 83 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-------~~~~ 83 (187)
|.+=...........+.+.+.|..+...-+.....+.+....+. .|.|+++...|+.+|. +-++
T Consensus 88 v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~---------~d~vl~~~~~~g~~g~~~~~~~~~~i~ 158 (220)
T 2fli_A 88 MTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDL---------VDQVLIMTVNPGFGGQAFIPECLEKVA 158 (220)
T ss_dssp EEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTT---------CSEEEEESSCTTCSSCCCCGGGHHHHH
T ss_pred EEEccCccccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhh---------CCEEEEEEECCCCcccccCHHHHHHHH
Q ss_pred HHHhhc----CCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 84 KIKESA----SLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 84 ~l~~~~----~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+++.. . +.|+++...-. .+.+.++.+.|++..+.
T Consensus 159 ~~~~~~~~~~~--~~~i~v~GGI~-~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 159 TVAKWRDEKGL--SFDIEVDGGVD-NKTIRACYEAGANVFVA 197 (220)
T ss_dssp HHHHHHHHTTC--CCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred HHHHHHHhcCC--CceEEEECcCC-HHHHHHHHHcCCCEEEE
No 340
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=48.59 E-value=77 Score=23.18 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=38.8
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
-++++.+++. +.+|.++|-. +.+.+..+++.|+++.++- .++.+.+.++.+..+
T Consensus 194 ~~~v~~~~~~----G~~V~~WTvn-~~~~~~~l~~~GVDgIiTD--~P~~~~~~~~~~~~~ 247 (250)
T 3ks6_A 194 AGLMAQVQAA----GLDFGCWAAH-TPSQITKALDLGVKVFTTD--RPTLAIALRTEHRME 247 (250)
T ss_dssp HHHHHHHHHT----TCEEEEECCC-SHHHHHHHHHHTCSEEEES--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC----CCEEEEEeCC-CHHHHHHHHHcCCCEEEcC--CHHHHHHHHHHhhcC
Confidence 3567777664 6788888764 6888899999999998875 356666666555443
No 341
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=48.22 E-value=58 Score=21.70 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=41.9
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHHhhh
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHLMKG 139 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~~~~ 139 (187)
..|++|.- ..+..+.+.+.. .+|+|++....+.......+...-.+++..+- +.++|.+++..++..
T Consensus 86 ~ad~~I~~-----~G~~t~~Ea~~~-----G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 154 (170)
T 2o6l_A 86 KTRAFITH-----GGANGIYEAIYH-----GIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIND 154 (170)
T ss_dssp TEEEEEEC-----CCHHHHHHHHHH-----TCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred CcCEEEEc-----CCccHHHHHHHc-----CCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcC
Confidence 45566652 224456666654 77898887655544445555554456666543 788899999888753
No 342
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=48.17 E-value=76 Score=23.03 Aligned_cols=101 Identities=12% Similarity=0.116 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCc-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q 046192 21 RKLIERLLKTSSY-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIM 99 (187)
Q Consensus 21 ~~~l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~l 99 (187)
...+.+.|.+.+. -|....+.+++++.++..-. .-++++=+. +...++.+.++.+++..+ ++-+- .
T Consensus 16 ~~~~~~~l~~~~ii~V~r~~~~~~~~~~~~al~~--------gGv~~iel~--~k~~~~~~~i~~l~~~~~--~~~ig-a 82 (225)
T 1mxs_A 16 AARIDAICEKARILPVITIAREEDILPLADALAA--------GGIRTLEVT--LRSQHGLKAIQVLREQRP--ELCVG-A 82 (225)
T ss_dssp HHHHHHHHHHHSEEEEECCSCGGGHHHHHHHHHH--------TTCCEEEEE--SSSTHHHHHHHHHHHHCT--TSEEE-E
T ss_pred HHHHHHHHHHCCEEEEEeCCCHHHHHHHHHHHHH--------CCCCEEEEe--cCCccHHHHHHHHHHhCc--ccEEe-e
Confidence 3444555666664 33335566666666543322 234554444 555678889998888764 44332 2
Q ss_pred eCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHH
Q 046192 100 SSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPH 135 (187)
Q Consensus 100 s~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~ 135 (187)
...-+.+.+..|+..||+..++ |-...++....+.
T Consensus 83 gtvl~~d~~~~A~~aGAd~v~~-p~~d~~v~~~~~~ 117 (225)
T 1mxs_A 83 GTVLDRSMFAAVEAAGAQFVVT-PGITEDILEAGVD 117 (225)
T ss_dssp ECCCSHHHHHHHHHHTCSSEEC-SSCCHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHCCCCEEEe-CCCCHHHHHHHHH
Confidence 2345678999999999987665 5455555444433
No 343
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=48.08 E-value=85 Score=25.77 Aligned_cols=69 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH-HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCC
Q 046192 39 DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG-YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAE 117 (187)
Q Consensus 39 ~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g-~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~ 117 (187)
.+..+..+.+ ....+|+|.+|........ .++++.+++..+ +.||++-.- .+.+.+..+.++|++
T Consensus 254 ~~~~~~a~~~-----------~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~--~~pvi~~~v-~t~~~a~~l~~aGad 319 (514)
T 1jcn_A 254 EDDKYRLDLL-----------TQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYP--HLQVIGGNV-VTAAQAKNLIDAGVD 319 (514)
T ss_dssp TTHHHHHHHH-----------HHTTCSEEEECCSCCCSHHHHHHHHHHHHHCT--TCEEEEEEE-CSHHHHHHHHHHTCS
T ss_pred hhhHHHHHHH-----------HHcCCCEEEeeccCCcchhHHHHHHHHHHhCC--CCceEeccc-chHHHHHHHHHcCCC
Q ss_pred ceee
Q 046192 118 EFFL 121 (187)
Q Consensus 118 ~yl~ 121 (187)
....
T Consensus 320 ~I~v 323 (514)
T 1jcn_A 320 GLRV 323 (514)
T ss_dssp EEEE
T ss_pred EEEE
No 344
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=47.89 E-value=0.66 Score=29.60 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.7
Q ss_pred chhhhhhcccccccCCCCCCCccC
Q 046192 163 ADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 163 ~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
...++.+|.+++.+..+|+|++||
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s~~EI 55 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFLVTEI 55 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCCHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHH
Confidence 355788999999999999999887
No 345
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=47.83 E-value=72 Score=22.62 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=37.4
Q ss_pred ccEEEE----eccCC----CCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 64 VNLIIT----DYCMP----GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 64 ~dlvi~----d~~~~----~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+|.+++ +.... ...+++.++.+++..+ ++|+++...-. .+.+.+++..|++++..
T Consensus 137 ~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~--~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 137 ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGI--SIPIVGIGGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp CSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTC--CCCEEEESSCC-TTTSHHHHHTTCSEEEE
T ss_pred CCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCC--CCCEEEEcCCC-HHHHHHHHHcCCCEEEE
Confidence 678886 32211 1236788888887542 48988877665 77777888999988643
No 346
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=47.70 E-value=65 Score=24.16 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCceEEEe--CCHHHHHHHHhccCcccccccccccccEEEEec
Q 046192 20 DRKLIERLLKTSSYQVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDY 71 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~ 71 (187)
..+.|...|+..||+|... -+..+..+.+...... .+...|++++=+
T Consensus 47 D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~-----~h~~~D~~vv~i 95 (277)
T 1nw9_B 47 DCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELARQ-----DHGALDCCVVVI 95 (277)
T ss_dssp HHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHHS-----CCTTCSEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh-----hcccCCeEEEEE
Confidence 6788999999999999875 3555666655443211 234466655443
No 347
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=47.48 E-value=24 Score=26.18 Aligned_cols=54 Identities=19% Similarity=0.329 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChh---HHHHHHHhCCCceeeCCCChHHHHHHHHH
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPS---RINRCLEEGAEEFFLKPVQLADVNKLKPH 135 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~---~~~~a~~~ga~~yl~kP~~~~~l~~~i~~ 135 (187)
++++++.+|+. . ++|++++... +.. ....+.+.|+++++.-....+++.+.+..
T Consensus 82 ~~~~i~~ir~~-~--~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 82 VLEMLREVTPE-L--SCPVVLLSYY-KPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSE 138 (262)
T ss_dssp HHHHHHHHGGG-C--SSCEEEECCS-HHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHH
T ss_pred HHHHHHHHHhc-C--CCCEEEEecC-cHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHH
Confidence 45677888875 2 7898877522 221 12348899999998865554454444443
No 348
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=47.29 E-value=38 Score=23.15 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=25.3
Q ss_pred eEEEEEeCCH--HHHHHHHHHHHhCCceEEEe
Q 046192 9 FHVLAVDDSI--IDRKLIERLLKTSSYQVTAV 38 (187)
Q Consensus 9 ~~ilivd~~~--~~~~~l~~~l~~~~~~v~~~ 38 (187)
++|.|.-||. ...+.+.+.|+..||+|.-+
T Consensus 8 mkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~ 39 (148)
T 4em8_A 8 KRVFLSSDHAGVELRLFLSAYLRDLGCEVFDC 39 (148)
T ss_dssp SEEEEEECGGGHHHHHHHHHHHHHTTCEEEEC
T ss_pred eEEEEEECchhHHHHHHHHHHHHHCCCEEEEe
Confidence 5899999987 56688999999999999865
No 349
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=47.22 E-value=60 Score=23.75 Aligned_cols=85 Identities=15% Similarity=0.055 Sum_probs=47.8
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-
Q 046192 2 GMVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY- 79 (187)
Q Consensus 2 ~~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~- 79 (187)
+||.....++||.+...-....+...|.+.|+.|..+ .+.+...+.+... . +..+..++.+.+.+
T Consensus 21 ~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------~--~~~~~~Dv~~~~~v~ 87 (260)
T 3gem_A 21 GHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQA-----------G--AVALYGDFSCETGIM 87 (260)
T ss_dssp ------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHH-----------T--CEEEECCTTSHHHHH
T ss_pred cCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhc-----------C--CeEEECCCCCHHHHH
Confidence 3444455678999998888899999998889888764 3333333333211 1 33333334443333
Q ss_pred HHHHHHHhhcCCCCCcEEEEeC
Q 046192 80 DLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
.+++.+.+... .+-+++..+
T Consensus 88 ~~~~~~~~~~g--~iD~lv~nA 107 (260)
T 3gem_A 88 AFIDLLKTQTS--SLRAVVHNA 107 (260)
T ss_dssp HHHHHHHHHCS--CCSEEEECC
T ss_pred HHHHHHHHhcC--CCCEEEECC
Confidence 46666666543 566766544
No 350
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=47.20 E-value=59 Score=22.72 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCceEEEeC--CHHHHHHHHh
Q 046192 19 IDRKLIERLLKTSSYQVTAVD--SGNKALEFLG 49 (187)
Q Consensus 19 ~~~~~l~~~l~~~~~~v~~~~--~~~~a~~~l~ 49 (187)
...+.|...|+..||+|.... +..+..+.+.
T Consensus 69 ~D~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~ 101 (173)
T 2ql9_A 69 KDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLK 101 (173)
T ss_dssp HHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 557889999999999888753 4555555553
No 351
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=47.12 E-value=42 Score=25.55 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=31.4
Q ss_pred CCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHh
Q 046192 93 DIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 93 ~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
++-+|+++.. ...+.+..|+++|.+=++-||+. .++..+.+....
T Consensus 72 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 120 (312)
T 3o9z_A 72 GVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEA 120 (312)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHH
T ss_pred CCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5666666544 45667889999999999999975 556555554443
No 352
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=47.08 E-value=82 Score=23.08 Aligned_cols=63 Identities=11% Similarity=0.156 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCceEEEeCC-----HHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCc
Q 046192 21 RKLIERLLKTSSYQVTAVDS-----GNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIP 95 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~~~-----~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~ 95 (187)
...+.+.+.+.||.+..+.. ..+.++.+.. ..+|-+|+-...... +.++.+++. ++|
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~-----------~~vdGiIi~~~~~~~---~~~~~l~~~----~iP 90 (294)
T 3qk7_A 29 ISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET-----------RRVDALIVAHTQPED---FRLQYLQKQ----NFP 90 (294)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH-----------TCCSEEEECSCCSSC---HHHHHHHHT----TCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc-----------CCCCEEEEeCCCCCh---HHHHHHHhC----CCC
Confidence 34455566677887776432 2334455432 235555554322211 445555543 567
Q ss_pred EEEEeC
Q 046192 96 VVIMSS 101 (187)
Q Consensus 96 iI~ls~ 101 (187)
+|++..
T Consensus 91 vV~~~~ 96 (294)
T 3qk7_A 91 FLALGR 96 (294)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 776654
No 353
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=47.03 E-value=47 Score=25.72 Aligned_cols=47 Identities=9% Similarity=0.023 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee-eCCC
Q 046192 76 MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF-LKPV 124 (187)
Q Consensus 76 ~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl-~kP~ 124 (187)
....+.+..+++..+ ++|||....-.+...+.+++..||+... ..|+
T Consensus 236 ~~~~~~l~~v~~~~~--~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~ 283 (349)
T 1p0k_A 236 ISTAASLAEIRSEFP--ASTMIASGGLQDALDVAKAIALGASCTGMAGHF 283 (349)
T ss_dssp CCHHHHHHHHHHHCT--TSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred ccHHHHHHHHHHhcC--CCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 456677777777543 7999999999999999999999999874 4443
No 354
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=46.97 E-value=90 Score=23.65 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=54.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~ 86 (187)
+++|.||+--..-...+..+.+..++++.. +....+..+.+... +.+-. .+-- +.+.
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~------------~~~~~-------~~~~---~~l~ 60 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA------------YGCEV-------RTID---AIEA 60 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH------------TTCEE-------CCHH---HHHH
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH------------hCCCc-------CCHH---HHhc
Confidence 379999998776665444444434777764 44333333333211 11111 1111 2222
Q ss_pred hhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHHh
Q 046192 87 ESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHLM 137 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~~ 137 (187)
. + ++-+|+++.. ...+.+..+++.|.+=++-||+ +.++..+.++.+.
T Consensus 61 ~--~--~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~ 111 (331)
T 4hkt_A 61 A--A--DIDAVVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVS 111 (331)
T ss_dssp C--T--TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred C--C--CCCEEEEeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 2 1 3445554443 3456677888888888888985 4555555444333
No 355
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=46.81 E-value=81 Score=22.95 Aligned_cols=90 Identities=14% Similarity=0.039 Sum_probs=52.3
Q ss_pred CCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC-CHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-H
Q 046192 3 MVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD-SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-D 80 (187)
Q Consensus 3 ~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~ 80 (187)
|+.....+++|-....-....+...|.+.|+.|..+. +.+.+-+...... ......+..+..++.+.+.+ .
T Consensus 5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~-------~~~~~~~~~~~~Dv~~~~~v~~ 77 (262)
T 3pk0_A 5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLD-------QLGSGKVIGVQTDVSDRAQCDA 77 (262)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-------TTSSSCEEEEECCTTSHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-------hhCCCcEEEEEcCCCCHHHHHH
Confidence 3444556788889888888999999988899887754 4333322221111 00112355555555554443 3
Q ss_pred HHHHHHhhcCCCCCcEEEEeC
Q 046192 81 LLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~ 101 (187)
+++.+.+... .+-+++-.+
T Consensus 78 ~~~~~~~~~g--~id~lvnnA 96 (262)
T 3pk0_A 78 LAGRAVEEFG--GIDVVCANA 96 (262)
T ss_dssp HHHHHHHHHS--CCSEEEECC
T ss_pred HHHHHHHHhC--CCCEEEECC
Confidence 5666665543 566776544
No 356
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=46.74 E-value=49 Score=23.90 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=44.0
Q ss_pred cc-EEEEeccCCCC---CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHh---CCCceee------CCCChHHHH
Q 046192 64 VN-LIITDYCMPGM---TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEE---GAEEFFL------KPVQLADVN 130 (187)
Q Consensus 64 ~d-lvi~d~~~~~~---~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~---ga~~yl~------kP~~~~~l~ 130 (187)
++ +++.+....+. -.++.++.+++.. ++|||.-..-.+.+.+.++++. |+++++. .|..+.++.
T Consensus 163 ~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~---~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~~~~~ 239 (244)
T 2y88_A 163 CSRFVVTDITKDGTLGGPNLDLLAGVADRT---DAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQAL 239 (244)
T ss_dssp CCCEEEEETTTTTTTSCCCHHHHHHHHTTC---SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHH
T ss_pred CCEEEEEecCCccccCCCCHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCHHHHH
Confidence 44 44556544322 3567888888643 7899998888888999999988 9987543 365555544
Q ss_pred H
Q 046192 131 K 131 (187)
Q Consensus 131 ~ 131 (187)
+
T Consensus 240 ~ 240 (244)
T 2y88_A 240 A 240 (244)
T ss_dssp H
T ss_pred H
Confidence 3
No 357
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=45.76 E-value=80 Score=22.57 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..++++.+++.. ++|+++-....+.+.+..+++.||+....
T Consensus 65 ~~~~i~~i~~~~---~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 65 FIDSVKRVAEAV---SIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp HHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 456778888764 78999887777888899999999987764
No 358
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=45.75 E-value=1.1e+02 Score=24.16 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=63.6
Q ss_pred ceEEEEEeC--CHHH---HHHHHHHHHhCCceEEEeCCHHHHHHHHhc------------cCcccccccccccccEEEEe
Q 046192 8 QFHVLAVDD--SIID---RKLIERLLKTSSYQVTAVDSGNKALEFLGL------------LNEDEQTNSQVIQVNLIITD 70 (187)
Q Consensus 8 ~~~ilivd~--~~~~---~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~------------~~~~~~~~~~~~~~dlvi~d 70 (187)
.-+|+||.- ++.. ...+.+.|.+.|+.|..-....+....... ...+ .......+|+||+=
T Consensus 38 ~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~DlvI~l 115 (365)
T 3pfn_A 38 PKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFRED--YDDISNQIDFIICL 115 (365)
T ss_dssp CCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTT--TCCCTTTCSEEEEE
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccC--hhhcccCCCEEEEE
Confidence 346888863 3333 355566666678888764433332221110 0000 00123457777763
Q ss_pred ccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 71 YCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 71 ~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
|+|| .++...+.... ...||+-+.. |-.+||. +++++++.+.+.++++|.
T Consensus 116 ----GGDG-T~L~aa~~~~~-~~~PvlGiN~-------------G~LGFLt-~~~~~~~~~~l~~vl~g~ 165 (365)
T 3pfn_A 116 ----GGDG-TLLYASSLFQG-SVPPVMAFHL-------------GSLGFLT-PFSFENFQSQVTQVIEGN 165 (365)
T ss_dssp ----SSTT-HHHHHHHHCSS-SCCCEEEEES-------------SSCTTTC-CEESTTHHHHHHHHHHSC
T ss_pred ----cChH-HHHHHHHHhcc-CCCCEEEEcC-------------CCCccce-eecHHHHHHHHHHHHcCC
Confidence 5677 34555544322 3679887764 5567888 788889999999999874
No 359
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=45.50 E-value=32 Score=26.82 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEe--CCCChhHHHHHHHhCCCceee-----CCCChHHHHHHHHHHhhh
Q 046192 78 GYDLLRKIKESASLKDIPVVIMS--SENIPSRINRCLEEGAEEFFL-----KPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls--~~~~~~~~~~a~~~ga~~yl~-----kP~~~~~l~~~i~~~~~~ 139 (187)
++++++.+++.. .+||++++ .-.+.+.+..+++.|+++++. +.-++......+......
T Consensus 228 ~lell~~i~~~~---~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~ 293 (330)
T 2yzr_A 228 LYEVLLEVKKLG---RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYN 293 (330)
T ss_dssp HHHHHHHHHHHT---SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhC---CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHh
Confidence 458888888754 68886444 334689999999999999864 333566555555554443
No 360
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=45.45 E-value=57 Score=20.81 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=48.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
.+++.++.| +.... -+.-.|+++..+.+.+++.+.+...- .+..+.+|+++-.+.. .--+.+...+.
T Consensus 3 ~mkiaVIgD-~dtv~----GFrLaGi~~~~v~~~ee~~~~~~~l~-------~~~digIIlIte~~a~-~i~~~i~~~~~ 69 (109)
T 2d00_A 3 PVRMAVIAD-PETAQ----GFRLAGLEGYGASSAEEAQSLLETLV-------ERGGYALVAVDEALLP-DPERAVERLMR 69 (109)
T ss_dssp CCCEEEEEC-HHHHH----HHHHTTSEEEECSSHHHHHHHHHHHH-------HHCCCSEEEEETTTCS-CHHHHHHHHTT
T ss_pred ccEEEEEeC-HHHHH----HHHHcCCeEEEeCCHHHHHHHHHHHh-------hCCCeEEEEEeHHHHH-hhHHHHHHHHh
Confidence 468889998 43322 22335888888888888777665432 2235779999987654 23345555553
Q ss_pred hcCCCCCcEEEEeCC
Q 046192 88 SASLKDIPVVIMSSE 102 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~ 102 (187)
.. ..|.|+....
T Consensus 70 ~~---~~P~Il~IPs 81 (109)
T 2d00_A 70 GR---DLPVLLPIAG 81 (109)
T ss_dssp CC---CCCEEEEESC
T ss_pred CC---CCeEEEEECC
Confidence 22 5777776554
No 361
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=45.40 E-value=39 Score=25.77 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=31.4
Q ss_pred CCcEEEEeCC--CChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHHh
Q 046192 93 DIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHLM 137 (187)
Q Consensus 93 ~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~~ 137 (187)
++-+|+++.. ...+.+..|+++|.+=|+-||+ +.++..+.++...
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 121 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIER 121 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHH
Confidence 5566666544 4567788999999999999996 4566555554443
No 362
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=45.31 E-value=71 Score=21.81 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=50.3
Q ss_pred EEEEEe--CCHHHHHHHHHHHHhCCceEEEeC-CHHHHHHHHhccCcccccccccccccEEEEeccCCCC--CHHHHHHH
Q 046192 10 HVLAVD--DSIIDRKLIERLLKTSSYQVTAVD-SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM--TGYDLLRK 84 (187)
Q Consensus 10 ~ilivd--~~~~~~~~l~~~l~~~~~~v~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~--~g~~~~~~ 84 (187)
+|.+++ ........+...|...|..+.... ++.+....+....++ |++|+ +..+|. +-.+.++.
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~----------d~~i~-iS~sG~t~~~~~~~~~ 109 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPT----------DLMIG-VSVWRYLRDTVAALAG 109 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTT----------EEEEE-ECCSSCCHHHHHHHHH
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCC----------CEEEE-EeCCCCCHHHHHHHHH
Confidence 445443 444556677777878888888776 566665555443332 34443 444543 34566666
Q ss_pred HHhhcCCCCCcEEEEeCCCChh
Q 046192 85 IKESASLKDIPVVIMSSENIPS 106 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~~~~~~ 106 (187)
.++. +.++|.+|+..+..
T Consensus 110 ak~~----g~~vi~IT~~~~s~ 127 (187)
T 3sho_A 110 AAER----GVPTMALTDSSVSP 127 (187)
T ss_dssp HHHT----TCCEEEEESCTTSH
T ss_pred HHHC----CCCEEEEeCCCCCc
Confidence 6664 67999999875544
No 363
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.19 E-value=1 Score=28.26 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=19.7
Q ss_pred hhhhhhcccccccCCCCCCCccC
Q 046192 164 DRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
..++.++.+++.+..+|+|++||
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s~~eI 48 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLTNKQI 48 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCCHHHH
T ss_pred hcCCHHHHHHHHHHHcCCCHHHH
Confidence 45788999999999999999887
No 364
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=45.06 E-value=1.5 Score=32.22 Aligned_cols=24 Identities=8% Similarity=-0.115 Sum_probs=21.6
Q ss_pred chhhhhhcccccccCCCCCCCccC
Q 046192 163 ADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 163 ~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
...++.+|.+++.+..+|+|++||
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~s~~eI 196 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGKTASVT 196 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTCCHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHH
Confidence 456899999999999999999987
No 365
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=45.05 E-value=85 Score=22.65 Aligned_cols=87 Identities=14% Similarity=0.050 Sum_probs=50.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH-hccCcccccccccccccEEEEeccCCCCCH-HHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFL-GLLNEDEQTNSQVIQVNLIITDYCMPGMTG-YDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l-~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g-~~~~~~l 85 (187)
..+++|.....-....+...|.+.|+.|..+....+.++.+ ...... .......+.+|+...+.+. -++++.+
T Consensus 12 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 12 DRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEE-----TGRQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-----HSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-----cCCCceEEEEecccCCHHHHHHHHHHH
Confidence 35788889888888899999988899888754333332222 111100 1113345666653344333 3466677
Q ss_pred HhhcCCCCCcEEEEeC
Q 046192 86 KESASLKDIPVVIMSS 101 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~ 101 (187)
.+... .+-+++..+
T Consensus 87 ~~~~g--~id~lv~nA 100 (252)
T 3f1l_A 87 AVNYP--RLDGVLHNA 100 (252)
T ss_dssp HHHCS--CCSEEEECC
T ss_pred HHhCC--CCCEEEECC
Confidence 66654 566776544
No 366
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=45.04 E-value=58 Score=24.88 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPH 135 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~ 135 (187)
.+.++..++..+ ..+|++-.. +.+...++.+.|++...+.+++++.+...++.
T Consensus 196 ~~ai~~~r~~~~--~~kI~vev~--tlee~~eA~~aGaD~I~ld~~~~e~l~~~v~~ 248 (296)
T 1qap_A 196 RQAVEKAFWLHP--DVPVEVEVE--NLDELDDALKAGADIIMLDNFNTDQMREAVKR 248 (296)
T ss_dssp HHHHHHHHHHST--TSCEEEEES--SHHHHHHHHHTTCSEEEESSCCHHHHHHHHHT
T ss_pred HHHHHHHHHhCC--CCcEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 356677777766 336776554 35778899999999888999999999887764
No 367
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=44.94 E-value=1.1e+02 Score=24.29 Aligned_cols=78 Identities=6% Similarity=0.009 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEE
Q 046192 18 IIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 18 ~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI 97 (187)
......|.+.-+..|..+.+..-..++++.+.....+ ++-+-..++.-+.+++.+.+. +.|||
T Consensus 100 ~e~~~~L~~~~~~~Gi~~~stpfD~~svd~l~~~~vd-------------~~KIgS~~~~N~pLL~~va~~----gKPVi 162 (385)
T 1vli_A 100 AEWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPS-------------AFKIASYEINHLPLLKYVARL----NRPMI 162 (385)
T ss_dssp GGGHHHHHHHHHHTTCEEECBCCSHHHHHHHHTTCCS-------------CEEECGGGTTCHHHHHHHHTT----CSCEE
T ss_pred HHHHHHHHHHHHHcCCcEEEccCCHHHHHHHHhcCCC-------------EEEECcccccCHHHHHHHHhc----CCeEE
Confidence 3455677777788898887766667777777543222 334444557778899988764 67999
Q ss_pred EEeCCCChhHHHHHH
Q 046192 98 IMSSENIPSRINRCL 112 (187)
Q Consensus 98 ~ls~~~~~~~~~~a~ 112 (187)
+=+..++.+.+..|.
T Consensus 163 LStGmaTl~Ei~~Av 177 (385)
T 1vli_A 163 FSTAGAEISDVHEAW 177 (385)
T ss_dssp EECTTCCHHHHHHHH
T ss_pred EECCCCCHHHHHHHH
Confidence 999888888777665
No 368
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=44.74 E-value=90 Score=22.86 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=27.6
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDS 40 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~ 40 (187)
...++||.+...-....+...|.+.|+.|..+..
T Consensus 29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r 62 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADL 62 (281)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 3467889999988899999999888998877543
No 369
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=44.72 E-value=70 Score=22.25 Aligned_cols=68 Identities=13% Similarity=-0.012 Sum_probs=42.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCc---eEEE-eCCHHHHHHHHhccCccccccccccc-ccEEEEeccCCCCCHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSY---QVTA-VDSGNKALEFLGLLNEDEQTNSQVIQ-VNLIITDYCMPGMTGYDLLR 83 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~---~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~-~dlvi~d~~~~~~~g~~~~~ 83 (187)
.+|.-+|-++...+..+..+...+. .+.. ..+..+....+ .... ||+|++|......+..++++
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----------~~~~~fD~I~~~~~~~~~~~~~~l~ 145 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-----------QNQPHFDVVFLDPPFHFNLAEQAIS 145 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-----------CSSCCEEEEEECCCSSSCHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh-----------ccCCCCCEEEECCCCCCccHHHHHH
Confidence 4788999999999888888877664 3443 34443321111 1246 89999986643333445666
Q ss_pred HHHh
Q 046192 84 KIKE 87 (187)
Q Consensus 84 ~l~~ 87 (187)
.+.+
T Consensus 146 ~~~~ 149 (201)
T 2ift_A 146 LLCE 149 (201)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6644
No 370
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=44.64 E-value=39 Score=24.57 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=52.4
Q ss_pred HHHHhCCceE--EEeCCHHHHHHHHhccCcccccccccccccEEEE--e-ccCCCCCHHHHHHHHHhhcCCC-CCcEEEE
Q 046192 26 RLLKTSSYQV--TAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT--D-YCMPGMTGYDLLRKIKESASLK-DIPVVIM 99 (187)
Q Consensus 26 ~~l~~~~~~v--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~--d-~~~~~~~g~~~~~~l~~~~~~~-~~~iI~l 99 (187)
+.|++.|+.+ +.+-+..+++...... .+.|-- . +.-.+.+|.++++.+.+..... .-..|+.
T Consensus 96 ~~L~~~GI~vn~TlifS~~Qa~~Aa~AG------------a~yISPfvgRi~d~~~dG~~~v~~i~~~~~~~~~~t~ila 163 (212)
T 3r8r_A 96 RALTDLGIKTNVTLIFNANQALLAARAG------------ATYVSPFLGRLDDIGHNGLDLISEVKQIFDIHGLDTQIIA 163 (212)
T ss_dssp HHHHHTTCCEEEEEECSHHHHHHHHHHT------------CSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHCCCcEEEEEeCCHHHHHHHHHcC------------CeEEEeccchhhhcCCChHHHHHHHHHHHHHcCCCCEEEE
Confidence 4456677654 4478888887765321 122211 0 1112578999888876543111 2345567
Q ss_pred eCCCChhHHHHHHHhCCCceeeCC
Q 046192 100 SSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 100 s~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
++..+...+.++..+|++..-.-|
T Consensus 164 AS~R~~~~v~~~a~~G~d~~Tip~ 187 (212)
T 3r8r_A 164 ASIRHPQHVTEAALRGAHIGTMPL 187 (212)
T ss_dssp BSCCSHHHHHHHHHTTCSEEEECH
T ss_pred ecCCCHHHHHHHHHcCCCEEEcCH
Confidence 777899999999999999654443
No 371
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=43.97 E-value=80 Score=22.83 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=48.7
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH-hccCcccccccccccccEEEEeccCCCCCHH-HHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFL-GLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRK 84 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l-~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~ 84 (187)
...++||.+...-....+...|.+.|+.|..+....+.++.+ ...... ......+..+..++.+.+.. .+++.
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRS-----NKHVQEPIVLPLDITDCTKADTEIKD 80 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-----CTTSCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-----ccccCcceEEeccCCCHHHHHHHHHH
Confidence 345788999988888889999988898887754333322222 111000 00002244444555554433 46666
Q ss_pred HHhhcCCCCCcEEEEeC
Q 046192 85 IKESASLKDIPVVIMSS 101 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~ 101 (187)
+.+... .+-+++..+
T Consensus 81 ~~~~~g--~iD~lvnnA 95 (250)
T 3nyw_A 81 IHQKYG--AVDILVNAA 95 (250)
T ss_dssp HHHHHC--CEEEEEECC
T ss_pred HHHhcC--CCCEEEECC
Confidence 666543 555666544
No 372
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=43.53 E-value=32 Score=24.98 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHh-----C-CCceee------CCCChHHHHHH
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEE-----G-AEEFFL------KPVQLADVNKL 132 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~-----g-a~~yl~------kP~~~~~l~~~ 132 (187)
.+++++.+++.. ++|+|....-.+.+.+.++++. | +++.+. .++++.++.+.
T Consensus 176 ~~~~i~~l~~~~---~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 176 DFSLTKKIAIEA---EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp CHHHHHHHHHHH---TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHHHH
T ss_pred CHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHHHHH
Confidence 478888988865 7899999888888999999988 9 887643 46666665443
No 373
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=43.50 E-value=91 Score=22.60 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCceEEEeCC---HHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEE
Q 046192 21 RKLIERLLKTSSYQVTAVDS---GNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~~~---~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI 97 (187)
...+.+.+++.||.+..+.. .....+.+... ....+|.+|+-...+. ...+.++.+.+. ++|+|
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l--------~~~~vdgiI~~~~~~~-~~~~~~~~~~~~----~iPvV 93 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEF--------VHLKVDAIFITTLDDV-YIGSAIEEAKKA----GIPVF 93 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHH--------HHTTCSEEEEECSCTT-TTHHHHHHHHHT----TCCEE
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH--------HHcCCCEEEEecCChH-HHHHHHHHHHHc----CCCEE
Confidence 34556666778988876432 23222222211 2234667776533222 122566776653 78899
Q ss_pred EEeCCC
Q 046192 98 IMSSEN 103 (187)
Q Consensus 98 ~ls~~~ 103 (187)
++....
T Consensus 94 ~~~~~~ 99 (293)
T 3l6u_A 94 AIDRMI 99 (293)
T ss_dssp EESSCC
T ss_pred EecCCC
Confidence 886543
No 374
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=43.46 E-value=57 Score=24.28 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCceEEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCCC
Q 046192 19 IDRKLIERLLKTSSYQVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG 75 (187)
Q Consensus 19 ~~~~~l~~~l~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~ 75 (187)
...+.|...|+..||+|... -+..+..+.+...... .+...|++++=+...|
T Consensus 44 ~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~-----~h~~~d~~v~~~lsHG 97 (259)
T 3sir_A 44 VDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSASQ-----NHSDSDCILVAILSHG 97 (259)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHTS-----CCTTEEEEEEEEEECT
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHh-----hccCCCEEEEEEecCC
Confidence 35678999999999999874 4566666666543321 2456777666554333
No 375
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=43.33 E-value=98 Score=23.20 Aligned_cols=56 Identities=7% Similarity=0.108 Sum_probs=41.6
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHh
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLM 137 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~ 137 (187)
.+.++..++..+ ...++++-.. +.+.+.+|.+.|++...+.+++++.+...++.+-
T Consensus 169 ~~ai~~~r~~~~-~~~~i~vev~--tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l~ 224 (273)
T 2b7n_A 169 KSFLTHARKNLP-FTAKIEIECE--SFEEAKNAMNAGADIVMCDNLSVLETKEIAAYRD 224 (273)
T ss_dssp HHHHHHHGGGSC-TTCCEEEEES--SHHHHHHHHHHTCSEEEEETCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCceEEEEcC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 457778888765 2356666554 4577889999999988888999999887776543
No 376
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=43.18 E-value=74 Score=24.00 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCceEEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCCC
Q 046192 20 DRKLIERLLKTSSYQVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG 75 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~ 75 (187)
..+.|...|+..||+|... -+..+..+.+...... .+...|++++=+...|
T Consensus 70 D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~-----dh~~~d~~vv~ilSHG 122 (277)
T 4ehd_A 70 DAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKE-----DHSKRSSFVCVLLSHG 122 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTS-----CCTTEEEEEEEEESCE
T ss_pred HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhh-----cccCCCEEEEEEEcCC
Confidence 6788999999999999875 3555666666543321 2456777776554443
No 377
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=43.17 E-value=95 Score=22.68 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHH
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLK 133 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i 133 (187)
++++.+++. +.+|.+.|- .+.+.+..+++.|+++.++- .++.+...+
T Consensus 201 ~~v~~~~~~----G~~v~~WTv-n~~~~~~~l~~~GVdgIiTD--~P~~~~~~l 247 (252)
T 3qvq_A 201 QQVSDIKAA----GYKVLAFTI-NDESLALKLYNQGLDAVFSD--YPQKIQSAI 247 (252)
T ss_dssp HHHHHHHHT----TCEEEEECC-CCHHHHHHHHHTTCCEEEES--SHHHHHHHH
T ss_pred HHHHHHHHC----CCEEEEEcC-CCHHHHHHHHHcCCCEEEeC--CHHHHHHHH
Confidence 566666664 678888876 47888999999999998875 355544444
No 378
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=43.02 E-value=1.4 Score=33.18 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=21.2
Q ss_pred hhhhhhcccccccCCCCCCCccC
Q 046192 164 DRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
..++.+|.+++.+..+|+|++||
T Consensus 196 ~~Lt~re~~vl~~~~~G~s~~eI 218 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRGKTNWEI 218 (265)
T ss_dssp CCCCHHHHHHHHHHHTTCCHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHH
Confidence 46899999999999999999987
No 379
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=42.99 E-value=88 Score=22.26 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=59.1
Q ss_pred CCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC-C-CHHHHHHHHHhhcCCCCCcEEEEeCCCChhH
Q 046192 31 SSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-M-TGYDLLRKIKESASLKDIPVVIMSSENIPSR 107 (187)
Q Consensus 31 ~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~-~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~ 107 (187)
.|..+. .+.+..++.+.... ..|.|-+ .|. . -|.+.++.++...+ ++|++.+..- +.+.
T Consensus 103 ~g~~~i~G~~t~~e~~~A~~~------------Gad~v~~---fpa~~~gG~~~lk~l~~~~~--~ipvvaiGGI-~~~n 164 (207)
T 2yw3_A 103 RGVPYLPGVLTPTEVERALAL------------GLSALKF---FPAEPFQGVRVLRAYAEVFP--EVRFLPTGGI-KEEH 164 (207)
T ss_dssp HTCCEEEEECSHHHHHHHHHT------------TCCEEEE---TTTTTTTHHHHHHHHHHHCT--TCEEEEBSSC-CGGG
T ss_pred hCCCEEecCCCHHHHHHHHHC------------CCCEEEE---ecCccccCHHHHHHHHhhCC--CCcEEEeCCC-CHHH
Confidence 453333 47788888776532 3567666 343 3 38899999998765 8999877665 4788
Q ss_pred HHHHHHhCCCcee-----eCCCChHHHHHHHHHHhh
Q 046192 108 INRCLEEGAEEFF-----LKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 108 ~~~a~~~ga~~yl-----~kP~~~~~l~~~i~~~~~ 138 (187)
+.+.+.+|++... .+ -+++++....+.+..
T Consensus 165 ~~~~l~aGa~~vavgSai~~-~d~~~i~~~a~~~~~ 199 (207)
T 2yw3_A 165 LPHYAALPNLLAVGGSWLLQ-GNLEAVRAKVRAAKA 199 (207)
T ss_dssp HHHHHTCSSBSCEEESGGGS-SCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEEehhhhC-CCHHHHHHHHHHHHH
Confidence 9999999988753 22 345556555555543
No 380
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=42.97 E-value=98 Score=22.82 Aligned_cols=81 Identities=6% Similarity=-0.002 Sum_probs=48.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHH-HhccCcccccccccccccEEEEeccCCCCCHH-HHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEF-LGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~-l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~l 85 (187)
..++||.....-....+...|.+.|+.|..+....+..+. ..... ..+..+..++.+.+.. .+++.+
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~~Dv~d~~~v~~~~~~~ 97 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIG-----------CGAAACRVDVSDEQQIIAMVDAC 97 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC-----------SSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-----------CcceEEEecCCCHHHHHHHHHHH
Confidence 4568888888888888999998889988875433333333 22111 1244444444554433 466666
Q ss_pred HhhcCCCCCcEEEEeC
Q 046192 86 KESASLKDIPVVIMSS 101 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~ 101 (187)
.+... .+-+++-.+
T Consensus 98 ~~~~g--~iD~lvnnA 111 (277)
T 3gvc_A 98 VAAFG--GVDKLVANA 111 (277)
T ss_dssp HHHHS--SCCEEEECC
T ss_pred HHHcC--CCCEEEECC
Confidence 66543 566666544
No 381
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=42.96 E-value=53 Score=24.92 Aligned_cols=39 Identities=10% Similarity=-0.077 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
++.++.+++..+ ++|||....-.+.+.+.+++..||+..
T Consensus 232 ~~~i~~v~~~~~--~ipvi~~GGI~~~~da~~~l~~GAd~V 270 (314)
T 2e6f_A 232 LANVNAFYRRCP--DKLVFGCGGVYSGEDAFLHILAGASMV 270 (314)
T ss_dssp HHHHHHHHHHCT--TSEEEEESSCCSHHHHHHHHHHTCSSE
T ss_pred HHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 678888887653 899999999889999999999998865
No 382
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=42.94 E-value=1.2e+02 Score=23.85 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=58.8
Q ss_pred eEEEEEe----CCHHHHHHHHHHHHhC-CceEE--EeCCHHHHHHHHhccCcccccccccccccEEEEeccCCC------
Q 046192 9 FHVLAVD----DSIIDRKLIERLLKTS-SYQVT--AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG------ 75 (187)
Q Consensus 9 ~~ilivd----~~~~~~~~l~~~l~~~-~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~------ 75 (187)
..++.+| +.+...+.++.+-+.. +..+. .+.+.+++..... .-.|.|.+... |+
T Consensus 121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~------------aGAD~I~vG~g-pGs~~~tr 187 (366)
T 4fo4_A 121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIE------------AGVSAVKVGIG-PGSICTTR 187 (366)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHH------------HTCSEEEECSS-CSTTBCHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHH------------cCCCEEEEecC-CCCCCCcc
Confidence 3455554 2334444455554443 44443 3677777766652 23668887321 21
Q ss_pred ------CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 76 ------MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 76 ------~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
...+..+..+.+.....++|||.-..-.+...+.+++.+||+...
T Consensus 188 ~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~ 238 (366)
T 4fo4_A 188 IVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVM 238 (366)
T ss_dssp HHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred cccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 233455555554211127899988888888999999999998764
No 383
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=42.80 E-value=82 Score=23.14 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=42.3
Q ss_pred cEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 65 NLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 65 dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
.+|.++. .......++++++++... ++|+++=..-.+.+.+.++++ ||+..+.=
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~~~--~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVG 218 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKVLD--KARLFYGGGIDSREKAREMLR-YADTIIVG 218 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHCS--SSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred CEEEEeC-CCCcchHHHHHHHHHhCC--CCCEEEEecCCCHHHHHHHHh-CCCEEEEC
Confidence 5888888 444556789999998753 678887677778899999888 99998764
No 384
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=42.78 E-value=1e+02 Score=23.04 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=57.3
Q ss_pred EEEeCCHHHHHHHHHHHHhCCceEEE--e-CCHHHHHHHHhccCcccccccccccccEEEEeccCC--C------CCHHH
Q 046192 12 LAVDDSIIDRKLIERLLKTSSYQVTA--V-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP--G------MTGYD 80 (187)
Q Consensus 12 livd~~~~~~~~l~~~l~~~~~~v~~--~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~--~------~~g~~ 80 (187)
++.|-.+.....+...+++.|..... . .+..+-++.+.....+ .|.+=...+ + .+-.+
T Consensus 128 ii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~g-----------fvY~vS~~GvTG~~~~~~~~~~~ 196 (267)
T 3vnd_A 128 LIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEG-----------YTYLLSRAGVTGTESKAGEPIEN 196 (267)
T ss_dssp EETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCS-----------CEEESCCCCCC--------CHHH
T ss_pred EeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCC-----------cEEEEecCCCCCCccCCcHHHHH
Confidence 34444444556677777788865442 2 2344555555433222 333311111 1 12346
Q ss_pred HHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 81 LLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 81 ~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
+++.+|+.. ++|+++=..-++.+.+..++..|||+.+.-.
T Consensus 197 ~v~~vr~~~---~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 197 ILTQLAEFN---APPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp HHHHHHTTT---CCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHhc---CCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 777887753 6888865555568888879999999998863
No 385
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=42.75 E-value=56 Score=19.96 Aligned_cols=40 Identities=38% Similarity=0.429 Sum_probs=29.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCC-ceEEEeCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSS-YQVTAVDSGNKALEFL 48 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~-~~v~~~~~~~~a~~~l 48 (187)
..+|+|++- -.....+...|...| +.+..+....+..+.+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~ 45 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVL 45 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence 368999999 777777888887788 8887765444444544
No 386
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=42.70 E-value=94 Score=22.52 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=12.7
Q ss_pred HHHHHHHHHhCCceEEEeC
Q 046192 21 RKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~~ 39 (187)
...+.+.+++.||.+..+.
T Consensus 32 ~~gi~~~a~~~g~~~~~~~ 50 (292)
T 3k4h_A 32 IRGISSFAHVEGYALYMST 50 (292)
T ss_dssp HHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHcCCEEEEEe
Confidence 4455666677888887753
No 387
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=42.58 E-value=33 Score=26.19 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=26.2
Q ss_pred CCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHH
Q 046192 93 DIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPH 135 (187)
Q Consensus 93 ~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~ 135 (187)
++-+|+++.. ...+.+..|++.|.+=|+-||+. .++..+.++.
T Consensus 66 ~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~ 112 (336)
T 2p2s_A 66 SIDLIACAVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRR 112 (336)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHH
T ss_pred CCCEEEEeCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 3445555443 34566777888888888888864 4444444433
No 388
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=42.55 E-value=28 Score=27.43 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=29.2
Q ss_pred CCcEEEEeCCCChhHHHHHHHhCCCcee-eCCCChHHHHHHHHHHhhh
Q 046192 93 DIPVVIMSSENIPSRINRCLEEGAEEFF-LKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 93 ~~~iI~ls~~~~~~~~~~a~~~ga~~yl-~kP~~~~~l~~~i~~~~~~ 139 (187)
.+|||.... ...|..+++ ..|-+.++|.+++..++..
T Consensus 315 G~PVIas~~----------v~~~~~G~l~v~~~d~~~la~ai~~ll~~ 352 (406)
T 2hy7_A 315 GLPAVCPNA----------VVGPYKSRFGYTPGNADSVIAAITQALEA 352 (406)
T ss_dssp TCCEEEEGG----------GTCSCSSEEEECTTCHHHHHHHHHHHHHC
T ss_pred CCcEEEehh----------cccCcceEEEeCCCCHHHHHHHHHHHHhC
Confidence 678885432 455778899 9999999999999998864
No 389
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=42.54 E-value=90 Score=22.25 Aligned_cols=85 Identities=9% Similarity=0.009 Sum_probs=50.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~l~ 86 (187)
..+++|.+...-....+...|.+.|+.|..+....+..+.+...- .....++..+..++.+.+.+ ++++.+.
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSM-------KEKGFKARGLVLNISDIESIQNFFAEIK 77 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-------HHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------HhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 457889999888888899999888988876543333322221110 11122355555555554433 3666666
Q ss_pred hhcCCCCCcEEEEeC
Q 046192 87 ESASLKDIPVVIMSS 101 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~ 101 (187)
+... .+-+++..+
T Consensus 78 ~~~~--~id~li~~A 90 (247)
T 3lyl_A 78 AENL--AIDILVNNA 90 (247)
T ss_dssp HTTC--CCSEEEECC
T ss_pred HHcC--CCCEEEECC
Confidence 6543 566776654
No 390
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=42.44 E-value=1.9 Score=31.69 Aligned_cols=24 Identities=17% Similarity=-0.028 Sum_probs=21.4
Q ss_pred chhhhhhcccccccCCCCCCCccC
Q 046192 163 ADRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 163 ~~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
...++.+|.+++.+..+|+|++||
T Consensus 171 ~~~Lt~~e~~vl~~~~~g~s~~eI 194 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVGKTMEEI 194 (234)
T ss_dssp CCCCCHHHHHHHHHHTTTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHH
Confidence 345899999999999999999987
No 391
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=42.35 E-value=88 Score=23.38 Aligned_cols=32 Identities=13% Similarity=-0.075 Sum_probs=22.9
Q ss_pred eEEEEEeCC--------------------HHHHHHHHHHHHhCCceEEEeCC
Q 046192 9 FHVLAVDDS--------------------IIDRKLIERLLKTSSYQVTAVDS 40 (187)
Q Consensus 9 ~~ilivd~~--------------------~~~~~~l~~~l~~~~~~v~~~~~ 40 (187)
++|+++... ......+...|.+.|++|..+..
T Consensus 4 mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~ 55 (342)
T 2iuy_A 4 LKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGA 55 (342)
T ss_dssp CEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESC
T ss_pred cEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEec
Confidence 689988876 23455677777778998887543
No 392
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=42.32 E-value=1.1e+02 Score=23.41 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=53.6
Q ss_pred CceEEEEEeCCHHHHHHHHHHHH---hCCceEEE--e---CCHHHHHHHHhccCcccccccccccccEEEEeccCCC-CC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLK---TSSYQVTA--V---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG-MT 77 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~---~~~~~v~~--~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~ 77 (187)
+.+-++++.|+|.+..+++...+ +.|+.... . .+.++.++.+...+.| ..++=+++-+-+|. .+
T Consensus 54 P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D-------~~V~GIlVQlPLP~hid 126 (303)
T 4b4u_A 54 PILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNAN-------PDVHGILLQHPVPAQID 126 (303)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC-------TTCCEEEECSSCCTTSC
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCC-------CCccEEEEeCCCccccC
Confidence 45789999999999988777664 45765443 3 3567788888766544 45889999998885 67
Q ss_pred HHHHHHHHHhh
Q 046192 78 GYDLLRKIKES 88 (187)
Q Consensus 78 g~~~~~~l~~~ 88 (187)
--.++..|...
T Consensus 127 ~~~i~~~I~p~ 137 (303)
T 4b4u_A 127 ERACFDAISLA 137 (303)
T ss_dssp HHHHHHHSCGG
T ss_pred hHHHHhccCcc
Confidence 66677666543
No 393
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=42.30 E-value=64 Score=25.24 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=27.8
Q ss_pred CCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHH
Q 046192 93 DIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHL 136 (187)
Q Consensus 93 ~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~ 136 (187)
++-+|+++.. ...+.+..|+++|.+=|+-||+. .++..+.++.+
T Consensus 64 ~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a 111 (387)
T 3moi_A 64 QMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAV 111 (387)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHH
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHH
Confidence 4455555443 34566788889999888999964 44544444433
No 394
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=42.07 E-value=54 Score=24.78 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=42.5
Q ss_pred ccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCCh--HHHHHHHHHHhhh
Q 046192 62 IQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQL--ADVNKLKPHLMKG 139 (187)
Q Consensus 62 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~--~~l~~~i~~~~~~ 139 (187)
.++|+||.|.-- . +|....++.|... -.+.+...+.-|...|+.|=|.. +++.+.++.+...
T Consensus 138 ~~~DvVLSDMAP-n-SG~~~vD~~Rs~~--------------aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~ 201 (269)
T 2px2_A 138 EISDTLLCDIGE-S-SPSAEIEEQRTLR--------------ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRR 201 (269)
T ss_dssp CCCSEEEECCCC-C-CSCHHHHHHHHHH--------------HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCC-C-CCccHHHHHHHHH--------------HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHH
Confidence 368899999854 3 7777777776642 14556667777776799998887 7776655554444
No 395
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=41.92 E-value=1e+02 Score=22.61 Aligned_cols=89 Identities=10% Similarity=0.082 Sum_probs=52.3
Q ss_pred CCCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCC-------------HHHHHHHHhccCcccccccccccccEEEE
Q 046192 3 MVTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDS-------------GNKALEFLGLLNEDEQTNSQVIQVNLIIT 69 (187)
Q Consensus 3 ~~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~-------------~~~a~~~l~~~~~~~~~~~~~~~~dlvi~ 69 (187)
|+.....++||-....-....+...|.+.|+.|..+.. .+.+.+..... ......+..+
T Consensus 5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 76 (281)
T 3s55_A 5 MADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV--------EKTGRRCISA 76 (281)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHH--------HHTTCCEEEE
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHH--------HhcCCeEEEE
Confidence 44445568899999988889999999888988877533 22222222111 1111235566
Q ss_pred eccCCCCCHH-HHHHHHHhhcCCCCCcEEEEeC
Q 046192 70 DYCMPGMTGY-DLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 70 d~~~~~~~g~-~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
..++.+.+.+ .+++.+.+... .+-+++-.+
T Consensus 77 ~~Dv~~~~~v~~~~~~~~~~~g--~id~lv~nA 107 (281)
T 3s55_A 77 KVDVKDRAALESFVAEAEDTLG--GIDIAITNA 107 (281)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHT--CCCEEEECC
T ss_pred eCCCCCHHHHHHHHHHHHHhcC--CCCEEEECC
Confidence 5555554443 36666666543 566666544
No 396
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.61 E-value=2.3 Score=25.20 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=19.5
Q ss_pred hhhhhhcccccccCCCCCCCccC
Q 046192 164 DRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
..++.++.+++.+..+|+|.+||
T Consensus 15 ~~L~~~e~~vl~l~~~g~s~~eI 37 (79)
T 1x3u_A 15 QTLSERERQVLSAVVAGLPNKSI 37 (79)
T ss_dssp HHHCHHHHHHHHHHTTTCCHHHH
T ss_pred HhCCHHHHHHHHHHHcCCCHHHH
Confidence 45788899999998999998876
No 397
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=41.49 E-value=89 Score=24.51 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=37.8
Q ss_pred cccEEEEeccCCCCC-HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGMT-GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~-g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+|+|.+|....... -.+.++.+++.. +.||++ ....+.+.+..+.+.|++....
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~---~~~Viv-g~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIV-GNVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHC---CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhc---CCcEEE-ccCCCHHHHHHHHHcCcCEEEE
Confidence 467998887654332 246777777764 577775 2234688899999999987765
No 398
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=41.47 E-value=41 Score=25.01 Aligned_cols=87 Identities=8% Similarity=-0.026 Sum_probs=49.8
Q ss_pred HHHHHHHH---hCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccC-CC-CCHHHHHHHHHhhcCC--CC
Q 046192 22 KLIERLLK---TSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM-PG-MTGYDLLRKIKESASL--KD 93 (187)
Q Consensus 22 ~~l~~~l~---~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~-~~-~~g~~~~~~l~~~~~~--~~ 93 (187)
..+.+++. ..|.++.. +.+.+++...+.. . .|++-+.... .. ...++....+.+..+. .+
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~-g-----------ad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~ 208 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEA-G-----------AEVLGINNRDLATLHINLETAPRLGRLARKRGFG 208 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH-T-----------CSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc-C-----------CCEEEEccccCcCCCCCHHHHHHHHHhCccccCC
Confidence 44555554 56876654 6777776544421 1 2455443321 11 1123344444443220 04
Q ss_pred CcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 94 IPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 94 ~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+|+|..+.-.+.+.+..+.. |+++++.
T Consensus 209 ~~vIAegGI~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 209 GVLVAESGYSRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp SEEEEESCCCSHHHHHTTTT-TCSEEEE
T ss_pred CeEEEEcCCCCHHHHHHHHc-CCCEEEE
Confidence 67888777778999999999 9999875
No 399
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=41.07 E-value=1.1e+02 Score=25.01 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCHHHHHHHHhccCcccccccccccccEEEEeccCCCC-CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCC
Q 046192 39 DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM-TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAE 117 (187)
Q Consensus 39 ~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~ 117 (187)
.+..+.+..+ ....+|.+.++...... ..++.++.+++..+ +.||++ ....+.+.+..+.+.|++
T Consensus 236 ~~~~~~a~~l-----------~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p--~~pvi~-g~~~t~e~a~~l~~~G~d 301 (494)
T 1vrd_A 236 PETMERVEKL-----------VKAGVDVIVIDTAHGHSRRVIETLEMIKADYP--DLPVVA-GNVATPEGTEALIKAGAD 301 (494)
T ss_dssp TTHHHHHHHH-----------HHTTCSEEEECCSCCSSHHHHHHHHHHHHHCT--TSCEEE-EEECSHHHHHHHHHTTCS
T ss_pred HhHHHHHHHH-----------HHhCCCEEEEEecCCchHHHHHHHHHHHHHCC--CceEEe-CCcCCHHHHHHHHHcCCC
Q ss_pred ceee
Q 046192 118 EFFL 121 (187)
Q Consensus 118 ~yl~ 121 (187)
....
T Consensus 302 ~I~v 305 (494)
T 1vrd_A 302 AVKV 305 (494)
T ss_dssp EEEE
T ss_pred EEEE
No 400
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=40.76 E-value=20 Score=27.10 Aligned_cols=60 Identities=13% Similarity=0.064 Sum_probs=40.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC--CHHHHHHHHhccCcccccccccccccEEEEec
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD--SGNKALEFLGLLNEDEQTNSQVIQVNLIITDY 71 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~ 71 (187)
.-.+||+.......+.|...|+..||+|.... +..+..+.+...... ..+...|++++=+
T Consensus 43 rG~~LIinn~~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~----~dh~~~d~~v~~i 104 (272)
T 3h11_A 43 LGICLIIDCIGNETELLRDTFTSLGYEVQKFLHLSMHGISQILGQFACM----PEHRDYDSFVCVL 104 (272)
T ss_dssp SEEEEEEESSCCCCSHHHHHHHHHTEEEEEEESCBHHHHHHHHHHHHTC----GGGGGCSEEEEEE
T ss_pred ceEEEEECCchHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHhc----cccCCCCEEEEEE
Confidence 34567888777778899999999999998853 556666666543210 0244677766544
No 401
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=40.69 E-value=81 Score=23.02 Aligned_cols=39 Identities=10% Similarity=0.262 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
.++++.+++. +.+|.++|- .+...+..+++.|+++.++-
T Consensus 201 ~~~v~~~~~~----G~~v~~wTv-n~~~~~~~l~~~GvdgIiTD 239 (252)
T 2pz0_A 201 PELVEGCKKN----GVKLFPWTV-DRKEDMERMIKAGVDGIITD 239 (252)
T ss_dssp HHHHHHHHHT----TCEECCBCC-CSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHC----CCEEEEECC-CCHHHHHHHHHcCCCEEEcC
Confidence 3566666664 567777774 46777888888898887764
No 402
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=40.47 E-value=97 Score=25.58 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=42.8
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce----------eeCCCChHHHHHHH
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF----------FLKPVQLADVNKLK 133 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y----------l~kP~~~~~l~~~i 133 (187)
.|++++=.. ...-|+.+++.+.. .+|+|+... .-..+....|.++| +..|.+.+.|..++
T Consensus 402 aD~~v~PS~-~E~fgl~~lEAma~-----G~PvI~s~~----gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai 471 (536)
T 3vue_A 402 ADVLAVPSR-FEPCGLIQLQGMRY-----GTPCACAST----GGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATL 471 (536)
T ss_dssp CSEEEECCS-CCSSCSHHHHHHHT-----TCCEEECSC----THHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHH
T ss_pred hheeecccc-cCCCCHHHHHHHHc-----CCCEEEcCC----CCchheeeCCCCccccccCCCceeEECCCCHHHHHHHH
Confidence 457766433 35567777887775 677875322 33445556666666 66777888999998
Q ss_pred HHHhh
Q 046192 134 PHLMK 138 (187)
Q Consensus 134 ~~~~~ 138 (187)
++++.
T Consensus 472 ~ral~ 476 (536)
T 3vue_A 472 KRAIK 476 (536)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88775
No 403
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=40.17 E-value=1e+02 Score=22.14 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=53.3
Q ss_pred HHHHhCCce-EEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 046192 26 RLLKTSSYQ-VTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENI 104 (187)
Q Consensus 26 ~~l~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~ 104 (187)
+.|.+.+.. |....+.+++++.++..-. .-++++=+. +...++.+.++.+++..+ .+ ++....--+
T Consensus 11 ~~l~~~~~i~v~r~~~~~~~~~~~~al~~--------gGv~~iel~--~k~~~~~~~i~~l~~~~~--~~-~vgagtvi~ 77 (214)
T 1wbh_A 11 SILTTGPVVPVIVVKKLEHAVPMAKALVA--------GGVRVLNVT--LRTECAVDAIRAIAKEVP--EA-IVGAGTVLN 77 (214)
T ss_dssp HHHHSCSEEEEECCSSGGGHHHHHHHHHH--------TTCCEEEEE--SCSTTHHHHHHHHHHHCT--TS-EEEEESCCS
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHH--------cCCCEEEEe--CCChhHHHHHHHHHHHCc--CC-EEeeCEEEE
Confidence 445555532 2234555655555533221 124444444 445677888888887764 33 333333556
Q ss_pred hhHHHHHHHhCCCceeeCCCChHHHHHHHH
Q 046192 105 PSRINRCLEEGAEEFFLKPVQLADVNKLKP 134 (187)
Q Consensus 105 ~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~ 134 (187)
.+.+..|+..||+..++ |-...++.+..+
T Consensus 78 ~d~~~~A~~aGAd~v~~-p~~d~~v~~~~~ 106 (214)
T 1wbh_A 78 PQQLAEVTEAGAQFAIS-PGLTEPLLKAAT 106 (214)
T ss_dssp HHHHHHHHHHTCSCEEE-SSCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEc-CCCCHHHHHHHH
Confidence 78899999999986665 444444444433
No 404
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=40.15 E-value=49 Score=25.34 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhcCCCCCcEEEE--eCCCChhHHHHHHHhCCCceee-----CCCChHHHHHHHHHHh
Q 046192 78 GYDLLRKIKESASLKDIPVVIM--SSENIPSRINRCLEEGAEEFFL-----KPVQLADVNKLKPHLM 137 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~l--s~~~~~~~~~~a~~~ga~~yl~-----kP~~~~~l~~~i~~~~ 137 (187)
.+++++.+++.. .+|++++ +.-.+.+.+..++..||++++. |.-++......+...+
T Consensus 195 ~~~ll~~i~~~~---~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai 258 (297)
T 4adt_A 195 PIDLILLTRKLK---RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAV 258 (297)
T ss_dssp CHHHHHHHHHHT---SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc---CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHH
Confidence 356777777764 5788743 3445789999999999999864 4435555444443333
No 405
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=40.12 E-value=95 Score=24.02 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=27.3
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFL 48 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l 48 (187)
...++||+|++. -.+...+.+.|.+ .+++..+.-..+.++.+
T Consensus 13 ~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~ 54 (365)
T 3abi_A 13 EGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKV 54 (365)
T ss_dssp ---CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHH
T ss_pred cCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH
Confidence 344679999998 7777788888865 46777654444444544
No 406
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=40.10 E-value=1.2e+02 Score=23.02 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=28.0
Q ss_pred CCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCCh--HHHHHHHHHH
Q 046192 93 DIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQL--ADVNKLKPHL 136 (187)
Q Consensus 93 ~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~~--~~l~~~i~~~ 136 (187)
++-+|+++.. ...+.+..|+++|.+=|+-||+.. ++..+.++.+
T Consensus 67 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 114 (337)
T 3ip3_A 67 KPDILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVY 114 (337)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 3445555543 244568889999999999999853 4544444433
No 407
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=40.08 E-value=1.5e+02 Score=24.17 Aligned_cols=89 Identities=17% Similarity=0.051 Sum_probs=57.3
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcc---------Cc---cccc-----------cccccccc
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLL---------NE---DEQT-----------NSQVIQVN 65 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~---------~~---~~~~-----------~~~~~~~d 65 (187)
-+.||=..|..-...+.+.|...|+++.........++...-. .| |++| +..+.++|
T Consensus 14 ~~aliSV~DK~gl~~~A~~L~~~G~eiisTgGTak~L~~~Gi~v~~Vs~~TgfPEildGRVKTLHP~ihggiLa~r~~ID 93 (464)
T 1zcz_A 14 KRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGLVKTLHPEIFAGILGPEPRWD 93 (464)
T ss_dssp CEEEEECSSTGGGHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCEEGGGGSCCCCGGGGTTTTCCHHHHHHHHSSSCSCS
T ss_pred cEEEEEecCccCHHHHHHHHHHCCCEEEECchHHHHHHHCCCceEEHHhhcCCchhhcCcccccChhheeeeeecCCCcc
Confidence 4677777777778888899988898887654333444432110 01 1111 34555899
Q ss_pred EEEEec---cCCCCCHHHHHHHHHhhcCCCCCcEEEEeC
Q 046192 66 LIITDY---CMPGMTGYDLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 66 lvi~d~---~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
+|++++ ..-+..|..+++.--+++. + |.++++
T Consensus 94 lVVvNLYPiEnIDIGGpsmiRaAAKN~~--~--V~vv~d 128 (464)
T 1zcz_A 94 VVFVDLYPPPDIDIGGVALLRAAAKNWK--K--VKPAFD 128 (464)
T ss_dssp EEEECCCCTTCCCSHHHHHHHHHHHTTT--T--CEEECS
T ss_pred EEEEcCCchhhhccccHHHHHHHHHcCC--C--EEEECC
Confidence 999994 5566779999998877654 3 444554
No 408
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=40.04 E-value=67 Score=23.51 Aligned_cols=86 Identities=16% Similarity=0.071 Sum_probs=52.3
Q ss_pred HHHHhCCceE--EEeCCHHHHHHHHhccCcccccccccccccEEEE---eccCCCCCHHHHHHHHHhhcCCC-CCcEEEE
Q 046192 26 RLLKTSSYQV--TAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIIT---DYCMPGMTGYDLLRKIKESASLK-DIPVVIM 99 (187)
Q Consensus 26 ~~l~~~~~~v--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~---d~~~~~~~g~~~~~~l~~~~~~~-~~~iI~l 99 (187)
+.|++.|+.+ +.+-+..+++...... .+.|-- .+.-.+.+|+++++.+.+..... .-..|+.
T Consensus 98 ~~L~~~GI~vn~TlifS~~QA~~Aa~AG------------a~yISPfvgRi~d~g~dG~~~v~~i~~~~~~~~~~T~Ila 165 (223)
T 3s1x_A 98 KTLSSEHINTNCTLVFNPIQALLAAKAG------------VTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILV 165 (223)
T ss_dssp HHHHHTTCCEEEEEECSHHHHHHHHHTT------------CSEEEEBSHHHHHTTSCTHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHCCCcEEEEEeCCHHHHHHHHHcC------------CeEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4556677654 4478888887766321 223211 11112467888888775533211 1234556
Q ss_pred eCCCChhHHHHHHHhCCCceeeCC
Q 046192 100 SSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 100 s~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
++..+...+.++..+|++..-.-|
T Consensus 166 AS~Rn~~~v~~aa~~G~d~~Tip~ 189 (223)
T 3s1x_A 166 ASIRNPIHVLRSAVIGADVVTVPF 189 (223)
T ss_dssp BSCCSHHHHHHHHHHTCSEEEECH
T ss_pred EeCCCHHHHHHHHHcCCCEEEeCH
Confidence 777889999999999999766654
No 409
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2; 2.00A {Listeria monocytogenes}
Probab=39.96 E-value=14 Score=26.57 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=50.9
Q ss_pred HHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccC---CCCC---HHHHHHHHHhhcCCCCC
Q 046192 23 LIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCM---PGMT---GYDLLRKIKESASLKDI 94 (187)
Q Consensus 23 ~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~---~~~~---g~~~~~~l~~~~~~~~~ 94 (187)
..-..|++.|+.+.. +.+|...+..+.... ||++-+|... .+.+ ...+++.+......-++
T Consensus 132 ~~l~~Lr~~G~~ialDDfG~g~ssl~~L~~l~-----------~~~~ki~~~~~~~~~~~~~~~~~~~~~i~~~a~~lg~ 200 (235)
T 3kzp_A 132 NKIKVIHGLGYHIAIDDVSCGLNSLERVMSYL-----------PYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKL 200 (235)
T ss_dssp HHHHHHHHTTCEEEECSTTSTTCCHHHHHHHG-----------GGCSEEEEEGGGGTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCEEEEEeCCCCchhHHHHHhcc-----------CcceEEeccHHHhhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 344556678988876 566666666664333 4466666654 2222 23345544332211155
Q ss_pred cEEEEeCCCChhHHHHHHHhCCC---c-eeeCCC
Q 046192 95 PVVIMSSENIPSRINRCLEEGAE---E-FFLKPV 124 (187)
Q Consensus 95 ~iI~ls~~~~~~~~~~a~~~ga~---~-yl~kP~ 124 (187)
.+| ...-.+.+....+.+.|++ + |+.||.
T Consensus 201 ~vi-aeGVEt~~~~~~l~~~G~~~~QG~~~~~P~ 233 (235)
T 3kzp_A 201 DFV-VEGIETKETMTLLESHGVSIFQGYLVNKPF 233 (235)
T ss_dssp EEE-EEEECSTHHHHHHHHTTCCSCEEEECCCCE
T ss_pred EEE-EEEecCHHHHHHHHHcCCCEeeeccccCCC
Confidence 555 4444577778888889976 3 467774
No 410
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=39.95 E-value=1.1e+02 Score=22.73 Aligned_cols=84 Identities=8% Similarity=-0.065 Sum_probs=48.4
Q ss_pred EEEEEe-CCHH---HHHHHHHHHHhCCceEEE---e----CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 10 HVLAVD-DSII---DRKLIERLLKTSSYQVTA---V----DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 10 ~ilivd-~~~~---~~~~l~~~l~~~~~~v~~---~----~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
+|.++. ++.. ....+.+.+++.|..+.. + .+....+..+... .+|.|++.. .+...
T Consensus 137 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~-----------~~dav~~~~--~~~~a 203 (362)
T 3snr_A 137 TVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAA-----------NPDAILVGA--SGTAA 203 (362)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHH-----------CCSEEEEEC--CHHHH
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhc-----------CCCEEEEec--CcchH
Confidence 455443 4433 334566667777876542 2 2344555655333 356888754 23456
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRI 108 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~ 108 (187)
..+++.+++.+- ..|++......+....
T Consensus 204 ~~~~~~~~~~g~--~~p~i~~~g~~~~~~~ 231 (362)
T 3snr_A 204 ALPQTTLRERGY--NGLIYQTHGAASMDFI 231 (362)
T ss_dssp HHHHHHHHHTTC--CSEEEECGGGCSHHHH
T ss_pred HHHHHHHHHcCC--CccEEeccCcCcHHHH
Confidence 778888888775 6788655555554443
No 411
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=39.79 E-value=51 Score=24.81 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
+++++.+++.. ++|||....-.+.+.+.+++..||+..
T Consensus 230 ~~~i~~i~~~~---~ipvia~GGI~~~~d~~~~l~~GAd~V 267 (311)
T 1ep3_A 230 LKLIHQVAQDV---DIPIIGMGGVANAQDVLEMYMAGASAV 267 (311)
T ss_dssp HHHHHHHHTTC---SSCEEECSSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHHcCCCEE
Confidence 46777787653 789998888888999999999998865
No 412
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=39.77 E-value=1.3e+02 Score=23.16 Aligned_cols=110 Identities=12% Similarity=0.151 Sum_probs=55.9
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
.+++|.||.--..-+..+..+....++++.. +....+..+.+..... .++..-..+ + +-+.+
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~--------~~~~~~~~~------~---~~~ll 67 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANN--------YPESTKIHG------S---YESLL 67 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTT--------CCTTCEEES------S---HHHHH
T ss_pred CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhC--------CCCCCeeeC------C---HHHHh
Confidence 3589999998766655444444434676654 4433333333321100 000011111 1 11222
Q ss_pred HhhcCCCCCcEEEEeCCC--ChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHh
Q 046192 86 KESASLKDIPVVIMSSEN--IPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~--~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
.. + ++-+|+++... ..+.+..+++.|.+=++-||+. .++..+.++.+.
T Consensus 68 ~~--~--~~D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~ 119 (362)
T 1ydw_A 68 ED--P--EIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACE 119 (362)
T ss_dssp HC--T--TCCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHH
T ss_pred cC--C--CCCEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHH
Confidence 22 1 34555555443 4567788999999888999974 555555444433
No 413
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=39.75 E-value=1.1e+02 Score=23.50 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHH
Q 046192 93 DIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHL 136 (187)
Q Consensus 93 ~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~ 136 (187)
++-+|+++.. ...+.+..|+++|-+=|+-||+. .++..+.++..
T Consensus 94 ~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a 141 (393)
T 4fb5_A 94 EVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATA 141 (393)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHH
T ss_pred CCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhH
Confidence 4445555443 45777889999999999999985 44544444433
No 414
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=39.75 E-value=1.1e+02 Score=22.25 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=57.1
Q ss_pred HHHHHHhCCc-eEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 24 IERLLKTSSY-QVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 24 l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
+.+.|.+.+. -|....+.+++++.++..-. .-++++=+. +...++.+.++.+++..+ ++- +.....
T Consensus 10 ~~~~l~~~~ii~vir~~~~~~~~~~~~al~~--------gGv~~iel~--~k~~~~~~~i~~l~~~~~--~l~-vgaGtv 76 (224)
T 1vhc_A 10 IIEKLRELKIVPVIALDNADDILPLADTLAK--------NGLSVAEIT--FRSEAAADAIRLLRANRP--DFL-IAAGTV 76 (224)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHH--------TTCCEEEEE--TTSTTHHHHHHHHHHHCT--TCE-EEEESC
T ss_pred HHHHHHHCCeEEEEeCCCHHHHHHHHHHHHH--------cCCCEEEEe--ccCchHHHHHHHHHHhCc--CcE-EeeCcE
Confidence 3344555553 33335566666665543322 224444444 555678889998888764 432 223334
Q ss_pred CChhHHHHHHHhCCCceeeCCCChHHHHHHHHH
Q 046192 103 NIPSRINRCLEEGAEEFFLKPVQLADVNKLKPH 135 (187)
Q Consensus 103 ~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~ 135 (187)
-+.+.+..|+..||+..++ |-...++.+..++
T Consensus 77 l~~d~~~~A~~aGAd~v~~-p~~d~~v~~~ar~ 108 (224)
T 1vhc_A 77 LTAEQVVLAKSSGADFVVT-PGLNPKIVKLCQD 108 (224)
T ss_dssp CSHHHHHHHHHHTCSEEEC-SSCCHHHHHHHHH
T ss_pred eeHHHHHHHHHCCCCEEEE-CCCCHHHHHHHHH
Confidence 4678999999999986655 5455554444444
No 415
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=39.73 E-value=1.4e+02 Score=23.49 Aligned_cols=78 Identities=10% Similarity=0.098 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEE
Q 046192 18 IIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 18 ~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI 97 (187)
......|.+.-+..|..+.+..-..+.++.+.....+ ++-+-..++.-+.+++.+.+. +.|||
T Consensus 90 ~e~~~~L~~~~~~~Gi~~~st~~d~~svd~l~~~~v~-------------~~KI~S~~~~n~~LL~~va~~----gkPvi 152 (349)
T 2wqp_A 90 EEDEIKLKEYVESKGMIFISTLFSRAAALRLQRMDIP-------------AYKIGSGECNNYPLIKLVASF----GKPII 152 (349)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCS-------------CEEECGGGTTCHHHHHHHHTT----CSCEE
T ss_pred HHHHHHHHHHHHHhCCeEEEeeCCHHHHHHHHhcCCC-------------EEEECcccccCHHHHHHHHhc----CCeEE
Confidence 3445667777777898777755556666766433222 333444456778889888764 67999
Q ss_pred EEeCCCChhHHHHHH
Q 046192 98 IMSSENIPSRINRCL 112 (187)
Q Consensus 98 ~ls~~~~~~~~~~a~ 112 (187)
+=+..++.+.+..|.
T Consensus 153 LstGmat~~Ei~~Av 167 (349)
T 2wqp_A 153 LSTGMNSIESIKKSV 167 (349)
T ss_dssp EECTTCCHHHHHHHH
T ss_pred EECCCCCHHHHHHHH
Confidence 988888777776665
No 416
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=39.73 E-value=43 Score=26.54 Aligned_cols=65 Identities=9% Similarity=-0.001 Sum_probs=42.8
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.|+.++-... ..-|+-+++.+.. .+|||. +.....+ ....|.++++..|-++++|.+++..++..
T Consensus 315 adv~v~pS~~-E~~g~~~lEAmA~-----G~PVV~-~~~g~~e----~v~~~~~G~lv~~~d~~~la~ai~~ll~~ 379 (413)
T 2x0d_A 315 SSIGISLMIS-PHPSYPPLEMAHF-----GLRVIT-NKYENKD----LSNWHSNIVSLEQLNPENIAETLVELCMS 379 (413)
T ss_dssp CCEEECCCSS-SSCCSHHHHHHHT-----TCEEEE-ECBTTBC----GGGTBTTEEEESSCSHHHHHHHHHHHHHH
T ss_pred CCEEEEecCC-CCCCcHHHHHHhC-----CCcEEE-eCCCcch----hhhcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 3455543221 2235556666654 789987 5443332 33557789999999999999999998864
No 417
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=39.71 E-value=47 Score=26.10 Aligned_cols=39 Identities=5% Similarity=-0.108 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
++++..+++..+ ++|||....-.+.+.+.+++..||+..
T Consensus 265 ~~~i~~v~~~~~--~ipII~~GGI~s~~da~~~l~aGAd~V 303 (354)
T 4ef8_A 265 LANINAFYRRCP--GKLIFGCGGVYTGEDAFLHVLAGASMV 303 (354)
T ss_dssp HHHHHHHHHHCT--TSEEEEESCCCSHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHhCC--CCCEEEECCcCCHHHHHHHHHcCCCEE
Confidence 678888888744 799999999999999999999998865
No 418
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=39.69 E-value=1.1e+02 Score=22.43 Aligned_cols=86 Identities=8% Similarity=-0.033 Sum_probs=49.8
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHHHH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRK 84 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~ 84 (187)
...++||-+...-....+...|.+.|+.|..+ ....+..+.+...- ......+..+..++.+.+.+ .+++.
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~Dv~d~~~v~~~~~~ 102 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEI-------EQAGGRAVAIRADNRDAEAIEQAIRE 102 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH-------HHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH-------HhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 34578899988888889999998889888764 33323222221100 01112355555555554443 36666
Q ss_pred HHhhcCCCCCcEEEEeC
Q 046192 85 IKESASLKDIPVVIMSS 101 (187)
Q Consensus 85 l~~~~~~~~~~iI~ls~ 101 (187)
+.+... .+-+++-.+
T Consensus 103 ~~~~~g--~iD~lvnnA 117 (271)
T 3v2g_A 103 TVEALG--GLDILVNSA 117 (271)
T ss_dssp HHHHHS--CCCEEEECC
T ss_pred HHHHcC--CCcEEEECC
Confidence 666543 566766544
No 419
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=39.39 E-value=1.1e+02 Score=22.35 Aligned_cols=86 Identities=8% Similarity=0.044 Sum_probs=52.2
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHH
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLL 82 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~ 82 (187)
+.....++||.....-....+...|.+.|+.|..+....+.++.+... ...++..+..++.+.+.+ .++
T Consensus 23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~d~~~v~~~~ 92 (266)
T 3grp_A 23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAAD----------LGKDVFVFSANLSDRKSIKQLA 92 (266)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCSSEEEEECCTTSHHHHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hCCceEEEEeecCCHHHHHHHH
Confidence 334456788999998889999999988999887754433333333111 012255555555554443 366
Q ss_pred HHHHhhcCCCCCcEEEEeC
Q 046192 83 RKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 83 ~~l~~~~~~~~~~iI~ls~ 101 (187)
+.+.+... .+-+++-.+
T Consensus 93 ~~~~~~~g--~iD~lvnnA 109 (266)
T 3grp_A 93 EVAEREME--GIDILVNNA 109 (266)
T ss_dssp HHHHHHHT--SCCEEEECC
T ss_pred HHHHHHcC--CCCEEEECC
Confidence 66665543 566666554
No 420
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=39.15 E-value=1.4e+02 Score=23.55 Aligned_cols=44 Identities=9% Similarity=0.237 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.++.+..+++.....++|||....-.+...+.+++..||+....
T Consensus 241 ~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 241 QITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp HHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 45556666553222378999888888899999999999998643
No 421
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=39.12 E-value=1.2e+02 Score=22.53 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=26.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALE 46 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~ 46 (187)
.+|.|+.-- .....+...+...|+.|..+....+.++
T Consensus 5 ~kV~VIGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~ 41 (283)
T 4e12_A 5 TNVTVLGTG-VLGSQIAFQTAFHGFAVTAYDINTDALD 41 (283)
T ss_dssp CEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSHHHHH
T ss_pred CEEEEECCC-HHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 578888764 4666788888888998888755554444
No 422
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=39.01 E-value=1e+02 Score=21.95 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=10.6
Q ss_pred HHHHHHHHHhCCceEEEe
Q 046192 21 RKLIERLLKTSSYQVTAV 38 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~ 38 (187)
...+.+.+++.||.+..+
T Consensus 21 ~~gi~~~a~~~g~~~~~~ 38 (272)
T 3o74_A 21 AKQLEQGARARGYQLLIA 38 (272)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 344555556677777654
No 423
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=38.84 E-value=78 Score=20.44 Aligned_cols=75 Identities=9% Similarity=0.141 Sum_probs=45.5
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
+++.++.| +... .-+.-.|+++..+.+.+++.+.+...- .+ .+.+|+++-.+...-. +.++..++.
T Consensus 3 mKiaVIGD-~Dtv----~GFrLaGie~~~v~~~ee~~~~~~~l~-------~~-digIIlIte~ia~~i~-~~i~~~~~~ 68 (115)
T 3aon_B 3 YKIGVVGD-KDSV----SPFRLFGFDVQHGTTKTEIRKTIDEMA-------KN-EYGVIYITEQCANLVP-ETIERYKGQ 68 (115)
T ss_dssp EEEEEESC-HHHH----GGGGGGTCEEECCCSHHHHHHHHHHHH-------HT-TEEEEEEEHHHHTTCH-HHHHHHHTS
T ss_pred eEEEEEEC-HHHH----HHHHHcCCeEEEeCCHHHHHHHHHHHH-------hc-CceEEEEeHHHHHHhH-HHHHHHhCC
Confidence 48999999 3322 223345787777888887777665432 22 5779999876655443 344445421
Q ss_pred cCCCCCcEEEEeC
Q 046192 89 ASLKDIPVVIMSS 101 (187)
Q Consensus 89 ~~~~~~~iI~ls~ 101 (187)
..|.|+...
T Consensus 69 ----~~P~IveIP 77 (115)
T 3aon_B 69 ----LTPAIILIP 77 (115)
T ss_dssp ----SSCEEEEEC
T ss_pred ----CCCEEEEEC
Confidence 467776544
No 424
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=38.77 E-value=44 Score=23.98 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=22.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY 33 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~ 33 (187)
.-+|.-+|.++.+.+..+..+++.|+
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 36889999999999999999998775
No 425
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=38.76 E-value=26 Score=26.12 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=23.4
Q ss_pred eEEEEEeCCHH--------HHHHHHHHHHhCCceEEEeCCH
Q 046192 9 FHVLAVDDSII--------DRKLIERLLKTSSYQVTAVDSG 41 (187)
Q Consensus 9 ~~ilivd~~~~--------~~~~l~~~l~~~~~~v~~~~~~ 41 (187)
++|+|+.+... ....+...+.+.|+.+..+...
T Consensus 3 ~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred cEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 47888886542 3456778888899998887544
No 426
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=38.72 E-value=71 Score=19.96 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=15.2
Q ss_pred EEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHH
Q 046192 12 LAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKA 44 (187)
Q Consensus 12 livd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a 44 (187)
.|.|.+.-..+..++-..+.||++..+.++++.
T Consensus 81 iiydqdqnrleefsrevrrrgfevrtvtspddf 113 (134)
T 2l69_A 81 IIYDQDQNRLEEFSREVRRRGFEVRTVTSPDDF 113 (134)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEEEESSHHHH
T ss_pred EEEeCchhHHHHHHHHHHhcCceEEEecChHHH
Confidence 344444444444444444445555555444443
No 427
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=38.69 E-value=57 Score=22.62 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=25.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 10 HVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 10 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
+|||.+..-.....+...|.+.|+.|..+.
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~ 31 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIV 31 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEE
Confidence 789999988888888888888899888754
No 428
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=38.58 E-value=30 Score=25.44 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=25.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
++|||.+. -.....+...|.+.|+.|....
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~ 35 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTS 35 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGTCEEEEEE
T ss_pred CcEEEECC-cHHHHHHHHHHHHCCCEEEEEE
Confidence 58999998 8888889888888899888753
No 429
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=38.54 E-value=76 Score=21.82 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCceEEE---eCCHHHHHH-HHhccCcccccccccccccEEEEeccC
Q 046192 20 DRKLIERLLKTSSYQVTA---VDSGNKALE-FLGLLNEDEQTNSQVIQVNLIITDYCM 73 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~---~~~~~~a~~-~l~~~~~~~~~~~~~~~~dlvi~d~~~ 73 (187)
....|...|.+.|++|.. +.+..+.+. .+.... ....+|+||+---+
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~-------a~~~~DlVittGG~ 91 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDAL-------SIDEVDVIISTGGT 91 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHH-------TCTTCCEEEEESCC
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH-------hcCCCCEEEecCCc
Confidence 456789999999987764 555544433 232110 12346788877544
No 430
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=38.45 E-value=84 Score=22.64 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCceEEEeCC---HHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHH-HHHhhcCCCCCcEE
Q 046192 22 KLIERLLKTSSYQVTAVDS---GNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLR-KIKESASLKDIPVV 97 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~~~~~---~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~-~l~~~~~~~~~~iI 97 (187)
..+.+.+++.||.+..+.. .....+.+... ....+|-+|+.. .+ .+.++ .+++. ++|+|
T Consensus 28 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l--------~~~~~dgiIi~~----~~-~~~~~~~l~~~----~iPvV 90 (277)
T 3e61_A 28 RGVEDVALAHGYQVLIGNSDNDIKKAQGYLATF--------VSHNCTGMISTA----FN-ENIIENTLTDH----HIPFV 90 (277)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHH--------HHTTCSEEEECG----GG-HHHHHHHHHHC-----CCEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH--------HhCCCCEEEEec----CC-hHHHHHHHHcC----CCCEE
Confidence 4555556677887776432 22222222211 223466777743 12 34566 66653 78898
Q ss_pred EEeCC
Q 046192 98 IMSSE 102 (187)
Q Consensus 98 ~ls~~ 102 (187)
++...
T Consensus 91 ~~~~~ 95 (277)
T 3e61_A 91 FIDRI 95 (277)
T ss_dssp EGGGC
T ss_pred EEecc
Confidence 87654
No 431
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=38.43 E-value=1.1e+02 Score=21.98 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
+..+.++.... ++|++.-++-...+....+...|+++++.
T Consensus 159 ~~~~~ir~~~~--~~~ii~ggGI~~~~~~~~~~~~gaDgvlV 198 (219)
T 2h6r_A 159 GTVRAVKEINK--DVKVLCGAGISKGEDVKAALDLGAEGVLL 198 (219)
T ss_dssp HHHHHHHHHCT--TCEEEECSSCCSHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHhccC--CCeEEEEeCcCcHHHHHHHhhCCCCEEEE
Confidence 45556666543 67888777777788888888999999875
No 432
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=38.37 E-value=66 Score=24.10 Aligned_cols=105 Identities=13% Similarity=0.068 Sum_probs=55.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHh-CCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKT-SSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~-~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 85 (187)
+++|.||+--..-...+...|.. .++++.. +....+..+.+... +.+-. -.+--+++.
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~------------~~~~~------~~~~~~ll~-- 65 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSD------------YRIMP------FDSIESLAK-- 65 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHH------------HTCCB------CSCHHHHHT--
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH------------cCCCC------cCCHHHHHh--
Confidence 58999999988777645555655 4677774 44333333333211 00100 012112222
Q ss_pred HhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHh
Q 046192 86 KESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
.. +.-+|........+.+..+++.|.+=++-||+. .++..+.++.+.
T Consensus 66 ---~~--D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~ 114 (308)
T 3uuw_A 66 ---KC--DCIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELST 114 (308)
T ss_dssp ---TC--SEEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHH
T ss_pred ---cC--CEEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHH
Confidence 11 332322233345666778889999888899984 555555544433
No 433
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=38.20 E-value=1e+02 Score=24.05 Aligned_cols=77 Identities=10% Similarity=0.154 Sum_probs=38.0
Q ss_pred CCceEEEEEe--CCHHH---HHHHHHHHHhCCceEEEeC--CHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 6 DSQFHVLAVD--DSIID---RKLIERLLKTSSYQVTAVD--SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 6 ~~~~~ilivd--~~~~~---~~~l~~~l~~~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
.+..+|.++- +++.+ ...+.+.+.+.||.+..+. +..+.++.+ ....+|-||+.. ..
T Consensus 23 ~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l-----------~~~~vDGiIi~~-----~~ 86 (412)
T 4fe7_A 23 TKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKI-----------KDWLGDGVIADF-----DD 86 (412)
T ss_dssp CCCEEEEEECCTTSHHHHHHHHHHHHHHHHHTCCEEEEECC-CC-------------------CCCSEEEEET-----TC
T ss_pred CCCceEEEEeCCcchhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhH-----------hcCCCCEEEEec-----CC
Confidence 3444554443 33433 4455566666788776543 222334444 334567777732 22
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
.+.++.+.+. ++|+|++...
T Consensus 87 ~~~~~~l~~~----~iPvV~i~~~ 106 (412)
T 4fe7_A 87 KQIEQALADV----DVPIVGVGGS 106 (412)
T ss_dssp HHHHHHHTTC----CSCEEEEEEC
T ss_pred hHHHHHHhhC----CCCEEEecCC
Confidence 3456666543 7899988653
No 434
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=38.08 E-value=47 Score=24.80 Aligned_cols=64 Identities=9% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHhhcCCCCCcEEEEe------CCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 74 PGMTGYDLLRKIKESASLKDIPVVIMS------SENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 74 ~~~~g~~~~~~l~~~~~~~~~~iI~ls------~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+.+--.+++.+++... .+|+++++ .+.-.....++.++|+++.|.-...+++.......+.+.
T Consensus 71 ~g~~~~~~~~~~~~~r~--~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~ 140 (252)
T 3tha_A 71 QGVDIHSVFELLARIKT--KKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECERY 140 (252)
T ss_dssp TTCCHHHHHHHHHHCCC--SSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc--CCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHc
No 435
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=38.02 E-value=99 Score=21.42 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=23.6
Q ss_pred cccEEEEeccCCCCC-HH----HHHHHHHhhcCCCCCcEEEEeCCCChh
Q 046192 63 QVNLIITDYCMPGMT-GY----DLLRKIKESASLKDIPVVIMSSENIPS 106 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~-g~----~~~~~l~~~~~~~~~~iI~ls~~~~~~ 106 (187)
.+|+|++--++.+.. .. ++++.+++. ..|++++....+..
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~----~~pv~~v~GNHD~~ 76 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSEA----HLPTAYVPGPQDAP 76 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG----CSCEEEECCTTSCS
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc----CCcEEEECCCCCch
Confidence 356877776665432 22 355666543 45788887766543
No 436
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=37.93 E-value=75 Score=24.99 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=27.9
Q ss_pred hhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhh
Q 046192 105 PSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKG 139 (187)
Q Consensus 105 ~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~ 139 (187)
.+.+..++++|.+=++-||++.++..+.++.+.+.
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~ 118 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQ 118 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHc
Confidence 46788899999999999999988877766655543
No 437
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=37.86 E-value=1.1e+02 Score=22.23 Aligned_cols=32 Identities=9% Similarity=0.021 Sum_probs=24.5
Q ss_pred CceEEEEEeCC--HHHHHHHHHHHHhCCceEEEe
Q 046192 7 SQFHVLAVDDS--IIDRKLIERLLKTSSYQVTAV 38 (187)
Q Consensus 7 ~~~~ilivd~~--~~~~~~l~~~l~~~~~~v~~~ 38 (187)
...+++|.... .-....+...|.+.|+.|..+
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~ 41 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFT 41 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE
Confidence 34568888876 677788888888889888764
No 438
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=37.80 E-value=66 Score=19.65 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=5.2
Q ss_pred HHHHHHHhCC
Q 046192 23 LIERLLKTSS 32 (187)
Q Consensus 23 ~l~~~l~~~~ 32 (187)
..+.+|.+.|
T Consensus 19 ~aK~~L~~~g 28 (92)
T 2lqo_A 19 RLKTALTANR 28 (92)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 3555555554
No 439
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=37.70 E-value=1.2e+02 Score=22.14 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCceEEEeC--C---HHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcE
Q 046192 22 KLIERLLKTSSYQVTAVD--S---GNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~~~~--~---~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 96 (187)
..+.+.+++.||.+..+. . ..+.++.+. ...+|-+|+-.... +. +.++.+.+ ++|+
T Consensus 31 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~-----------~~~vdgiIi~~~~~--~~-~~~~~~~~-----~iPv 91 (289)
T 3k9c_A 31 EQIYAAATRRGYDVMLSAVAPSRAEKVAVQALM-----------RERCEAAILLGTRF--DT-DELGALAD-----RVPA 91 (289)
T ss_dssp HHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHT-----------TTTEEEEEEETCCC--CH-HHHHHHHT-----TSCE
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH-----------hCCCCEEEEECCCC--CH-HHHHHHHc-----CCCE
Confidence 445556667788776632 2 234444442 23455555543222 22 44444432 5677
Q ss_pred EEEeCC
Q 046192 97 VIMSSE 102 (187)
Q Consensus 97 I~ls~~ 102 (187)
|++...
T Consensus 92 V~i~~~ 97 (289)
T 3k9c_A 92 LVVARA 97 (289)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 766543
No 440
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=37.52 E-value=93 Score=21.30 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=33.5
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee-----------eCCCChHHHHHHHHHH
Q 046192 77 TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF-----------LKPVQLADVNKLKPHL 136 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl-----------~kP~~~~~l~~~i~~~ 136 (187)
...++++.+++. +.++.++|+..........-..|..+|+ .|| +++-+..+++++
T Consensus 88 g~~~~l~~L~~~----g~~~~i~tn~~~~~~~~~l~~~~l~~~fd~~~~~~~~~~~KP-~p~~~~~a~~~l 153 (216)
T 3kbb_A 88 GVREALEFVKSK----RIKLALATSTPQREALERLRRLDLEKYFDVMVFGDQVKNGKP-DPEIYLLVLERL 153 (216)
T ss_dssp THHHHHHHHHHT----TCEEEEECSSCHHHHHHHHHHTTCGGGCSEEECGGGSSSCTT-STHHHHHHHHHH
T ss_pred cHHHHHHHHHHc----CCCcccccCCcHHHHHHHHHhcCCCccccccccccccCCCcc-cHHHHHHHHHhh
Confidence 345688888774 5678888876544444444456766554 467 455555555544
No 441
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=37.48 E-value=82 Score=22.36 Aligned_cols=35 Identities=17% Similarity=0.001 Sum_probs=27.9
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
..+..+|+|.+...-....+...|.+.|+.|..+.
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~ 38 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVS 38 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 34456789999988888889888888898887653
No 442
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=37.45 E-value=1.2e+02 Score=22.11 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=40.6
Q ss_pred EEeccC-CCC-CHHHHHHHHHhhcCCCCCcEE--EEeCCCChhHHHHHHHhCCCceeeCCCC-hHHHHHHHHHHh
Q 046192 68 ITDYCM-PGM-TGYDLLRKIKESASLKDIPVV--IMSSENIPSRINRCLEEGAEEFFLKPVQ-LADVNKLKPHLM 137 (187)
Q Consensus 68 i~d~~~-~~~-~g~~~~~~l~~~~~~~~~~iI--~ls~~~~~~~~~~a~~~ga~~yl~kP~~-~~~l~~~i~~~~ 137 (187)
++|-.. |+. -|..+++.||+.. +.|+. +++.. ...++..+.++||+.+...... ...+.+.++.+.
T Consensus 33 vmDG~fvpn~t~G~~~v~~lr~~~---~~~~dvhLmv~d-p~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~ 103 (231)
T 3ctl_A 33 IMDGHFVPNLTLSPFFVSQVKKLA---TKPLDCHLMVTR-PQDYIAQLARAGADFITLHPETINGQAFRLIDEIR 103 (231)
T ss_dssp EECSSSSSCCCBCHHHHHHHHTTC---CSCEEEEEESSC-GGGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHH
T ss_pred EEeCccCccchhcHHHHHHHHhcc---CCcEEEEEEecC-HHHHHHHHHHcCCCEEEECcccCCccHHHHHHHHH
Confidence 335442 343 4899999999863 34443 34443 4557888999999988766544 333444554443
No 443
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=37.43 E-value=53 Score=22.78 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=24.2
Q ss_pred eEEEEEeCCH--HHHHHHHHHHHhCCceEEEe
Q 046192 9 FHVLAVDDSI--IDRKLIERLLKTSSYQVTAV 38 (187)
Q Consensus 9 ~~ilivd~~~--~~~~~l~~~l~~~~~~v~~~ 38 (187)
++|.|.-|+. ...+.|...|+..||+|.-+
T Consensus 4 MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~ 35 (162)
T 2vvp_A 4 MRVYLGADHAGYELKQRIIEHLKQTGHEPIDC 35 (162)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CEEEEEeCchhHHHHHHHHHHHHHCCCEEEEe
Confidence 4788888886 45688999999999998865
No 444
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=37.36 E-value=1.3e+02 Score=22.70 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhCCceEEEe
Q 046192 20 DRKLIERLLKTSSYQVTAV 38 (187)
Q Consensus 20 ~~~~l~~~l~~~~~~v~~~ 38 (187)
....+...+.+.||.+..+
T Consensus 88 ~~~gi~~~a~~~g~~~~~~ 106 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLG 106 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 3455666667788888764
No 445
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=37.16 E-value=1.4e+02 Score=22.88 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=43.8
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHh---CCceEEE--e---CCHHHHHHHHhccCcccccccccccccEEEEeccCC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKT---SSYQVTA--V---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP 74 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~---~~~~v~~--~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~ 74 (187)
+.+.|+++.++|.+..+++...+. .|+.... + .+.++.++.+...+.| ..+|=+++-+-+|
T Consensus 38 P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d-------~~v~GIlVqlPLP 106 (300)
T 4a26_A 38 PGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNND-------PNCHGIIVQLPLP 106 (300)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC-------TTCCEEEECSCCC
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCC-------CCCCEEEEcCCCC
Confidence 457899999999999888877754 5765544 3 3567888888776654 3477788777776
No 446
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=36.79 E-value=93 Score=23.14 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=44.9
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhC-----C-ceEEEeCCHHHHHHHHhc-c--Cc---cc----------ccccccc
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLKTS-----S-YQVTAVDSGNKALEFLGL-L--NE---DE----------QTNSQVI 62 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~~~-----~-~~v~~~~~~~~a~~~l~~-~--~~---~~----------~~~~~~~ 62 (187)
...+++|.|++--.. ...+...|.+. | ++|..+.. .+..+.+.. . .. .+ +......
T Consensus 5 ~~~~m~I~iiG~G~m-G~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (317)
T 2qyt_A 5 NQQPIKIAVFGLGGV-GGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVG 82 (317)
T ss_dssp --CCEEEEEECCSHH-HHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHC
T ss_pred CCCCCEEEEECcCHH-HHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccC
Confidence 344578999986654 45677777666 8 88887766 444444432 1 00 00 0000123
Q ss_pred cccEEEEeccCCCCCHHHHHHHHHhh
Q 046192 63 QVNLIITDYCMPGMTGYDLLRKIKES 88 (187)
Q Consensus 63 ~~dlvi~d~~~~~~~g~~~~~~l~~~ 88 (187)
.+|+||+-...+. -.++++.++..
T Consensus 83 ~~D~vil~vk~~~--~~~v~~~i~~~ 106 (317)
T 2qyt_A 83 TVDYILFCTKDYD--MERGVAEIRPM 106 (317)
T ss_dssp CEEEEEECCSSSC--HHHHHHHHGGG
T ss_pred CCCEEEEecCccc--HHHHHHHHHhh
Confidence 5788888876554 35567777654
No 447
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=36.65 E-value=1.2e+02 Score=22.15 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=53.5
Q ss_pred HHHHhCCceEE-EeCCHHHHHHHHhccCcccccccccccccEEEEeccCC-CC-CHHHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 26 RLLKTSSYQVT-AVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP-GM-TGYDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 26 ~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~-~~-~g~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
+...+.|..+. .+.+..|+.+.+.. .+|+|=+ .| .. .|.+.++.++...+ ++|++....-
T Consensus 121 ~~~~~~gi~~ipGv~TptEi~~A~~~------------Gad~vK~---FPa~~~gG~~~lkal~~p~p--~ip~~ptGGI 183 (232)
T 4e38_A 121 RACQEIGIDIVPGVNNPSTVEAALEM------------GLTTLKF---FPAEASGGISMVKSLVGPYG--DIRLMPTGGI 183 (232)
T ss_dssp HHHHHHTCEEECEECSHHHHHHHHHT------------TCCEEEE---CSTTTTTHHHHHHHHHTTCT--TCEEEEBSSC
T ss_pred HHHHHcCCCEEcCCCCHHHHHHHHHc------------CCCEEEE---CcCccccCHHHHHHHHHHhc--CCCeeeEcCC
Confidence 33444565443 47889998888742 2456654 44 33 38999999998655 8999876555
Q ss_pred CChhHHHHHHHhCCCcee
Q 046192 103 NIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 103 ~~~~~~~~a~~~ga~~yl 120 (187)
+.+.+.+++.+|+...+
T Consensus 184 -~~~n~~~~l~aGa~~~v 200 (232)
T 4e38_A 184 -TPSNIDNYLAIPQVLAC 200 (232)
T ss_dssp -CTTTHHHHHTSTTBCCE
T ss_pred -CHHHHHHHHHCCCeEEE
Confidence 57889999999987654
No 448
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=36.58 E-value=1.4e+02 Score=22.71 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=52.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
+||.||+--..-...+..+.+..++++.. +....+..+.+.... ...-+.-| - -+.+..
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~----------~~~~~~~~-------~---~~ll~~ 62 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKL----------GVEKAYKD-------P---HELIED 62 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHH----------TCSEEESS-------H---HHHHHC
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHh----------CCCceeCC-------H---HHHhcC
Confidence 69999998776665444444434677764 433333333332110 00011111 1 122222
Q ss_pred hcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHH
Q 046192 88 SASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHL 136 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~ 136 (187)
+ .+-+|+++.. ...+.+..+++.|.+=++-||+ +.++..+.++.+
T Consensus 63 --~--~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a 111 (344)
T 3ezy_A 63 --P--NVDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEET 111 (344)
T ss_dssp --T--TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHH
T ss_pred --C--CCCEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 1 4445555443 2345577788888888888985 455554444433
No 449
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=36.53 E-value=1.2e+02 Score=22.06 Aligned_cols=88 Identities=9% Similarity=-0.055 Sum_probs=51.7
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCC-------------HHHHHHHHhccCcccccccccccccEEEEe
Q 046192 4 VTDSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDS-------------GNKALEFLGLLNEDEQTNSQVIQVNLIITD 70 (187)
Q Consensus 4 ~~~~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~-------------~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d 70 (187)
+.....++||-....-....+...|.+.|+.|..+.. .+..-+..... ......+..+.
T Consensus 6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 77 (287)
T 3pxx_A 6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEV--------EKTGRKAYTAE 77 (287)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHH--------HHTTSCEEEEE
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHH--------HhcCCceEEEE
Confidence 3344567899999988889999999888998877532 22222211111 11112355555
Q ss_pred ccCCCCCHH-HHHHHHHhhcCCCCCcEEEEeC
Q 046192 71 YCMPGMTGY-DLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 71 ~~~~~~~g~-~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
.++.+.+.+ ++++.+.+... .+-+++..+
T Consensus 78 ~D~~~~~~v~~~~~~~~~~~g--~id~lv~nA 107 (287)
T 3pxx_A 78 VDVRDRAAVSRELANAVAEFG--KLDVVVANA 107 (287)
T ss_dssp CCTTCHHHHHHHHHHHHHHHS--CCCEEEECC
T ss_pred ccCCCHHHHHHHHHHHHHHcC--CCCEEEECC
Confidence 555555444 46666666543 566776544
No 450
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=36.45 E-value=86 Score=24.07 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=36.8
Q ss_pred CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce-eeCCC
Q 046192 77 TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF-FLKPV 124 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y-l~kP~ 124 (187)
...+.+..+++..+ ++|||....-.+...+.+++..||+.. +.+|+
T Consensus 242 ~~~~~l~~v~~~~~--~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~ 288 (332)
T 1vcf_A 242 PTARAILEVREVLP--HLPLVASGGVYTGTDGAKALALGADLLAVARPL 288 (332)
T ss_dssp BHHHHHHHHHHHCS--SSCEEEESSCCSHHHHHHHHHHTCSEEEECGGG
T ss_pred cHHHHHHHHHHhcC--CCeEEEECCCCCHHHHHHHHHhCCChHhhhHHH
Confidence 45667777777654 699999999999999999999999876 45564
No 451
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=36.15 E-value=1.2e+02 Score=22.04 Aligned_cols=81 Identities=11% Similarity=-0.028 Sum_probs=47.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~l~ 86 (187)
..+++|.....-....+...|.+.|+.|..+....+..+.+....+ .+..+..++.+.+.+ .+++.+.
T Consensus 9 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~Dv~d~~~v~~~~~~~~ 77 (270)
T 1yde_A 9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP-----------GAVFILCDVTQEDDVKTLVSETI 77 (270)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT-----------TEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----------CCeEEEcCCCCHHHHHHHHHHHH
Confidence 4578999999888899999998889988875433333333321111 133444444444433 3555555
Q ss_pred hhcCCCCCcEEEEeC
Q 046192 87 ESASLKDIPVVIMSS 101 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~ 101 (187)
+... .+-+++...
T Consensus 78 ~~~g--~iD~lv~nA 90 (270)
T 1yde_A 78 RRFG--RLDCVVNNA 90 (270)
T ss_dssp HHHS--CCCEEEECC
T ss_pred HHcC--CCCEEEECC
Confidence 5443 455666543
No 452
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=36.13 E-value=91 Score=20.45 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=51.1
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCC-HHHHHHHHhccCc-----------cccccc--ccccccEEEEeccCC
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDS-GNKALEFLGLLNE-----------DEQTNS--QVIQVNLIITDYCMP 74 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~-~~~a~~~l~~~~~-----------~~~~~~--~~~~~dlvi~d~~~~ 74 (187)
.+|+|++. -.+...+...|...|+.|..+.. ..+..+.+....+ ++.+.. .-...|+|++-..-.
T Consensus 4 ~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (153)
T 1id1_A 4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence 46777776 44445566666666776766533 2222111110000 000000 123466777776432
Q ss_pred CCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 75 GMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 75 ~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
. .-..++...++..+ ..++++.... .+........|++..+
T Consensus 83 ~-~n~~~~~~a~~~~~--~~~ii~~~~~--~~~~~~l~~~G~~~vi 123 (153)
T 1id1_A 83 A-DNAFVVLSAKDMSS--DVKTVLAVSD--SKNLNKIKMVHPDIIL 123 (153)
T ss_dssp H-HHHHHHHHHHHHTS--SSCEEEECSS--GGGHHHHHTTCCSEEE
T ss_pred H-HHHHHHHHHHHHCC--CCEEEEEECC--HHHHHHHHHcCCCEEE
Confidence 1 22334455566544 5667665543 4444445667887433
No 453
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=36.03 E-value=1.2e+02 Score=21.97 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=11.7
Q ss_pred HHHHHHHHHhCCceEEEe
Q 046192 21 RKLIERLLKTSSYQVTAV 38 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~ 38 (187)
...+...+++.||.+..+
T Consensus 27 ~~gi~~~a~~~g~~~~~~ 44 (290)
T 2rgy_A 27 LKQTDLELRAVHRHVVVA 44 (290)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 345556666778877764
No 454
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=36.01 E-value=95 Score=23.75 Aligned_cols=55 Identities=9% Similarity=0.084 Sum_probs=39.4
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC----CChHHHHHHHHHHhhh
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP----VQLADVNKLKPHLMKG 139 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP----~~~~~l~~~i~~~~~~ 139 (187)
.+++.+.. .+|+|++....+.......+..+-.+++..| .+.+.|.+++.+++..
T Consensus 298 t~~Ea~~~-----G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~ 356 (391)
T 3tsa_A 298 TAFTATRL-----GIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGD 356 (391)
T ss_dssp HHHHHHHT-----TCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHh-----CCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcC
Confidence 45555543 7899988665555555555655666788877 8899999999998864
No 455
>2bas_A YKUI protein; EAL domain, structural genom protein structure initiative, midwest center for structural genomics, MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*
Probab=35.95 E-value=1.3e+02 Score=23.93 Aligned_cols=94 Identities=12% Similarity=0.160 Sum_probs=56.9
Q ss_pred HHHHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC-----CHHHHHHHHHhhcCCCCC
Q 046192 22 KLIERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM-----TGYDLLRKIKESASLKDI 94 (187)
Q Consensus 22 ~~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~-----~g~~~~~~l~~~~~~~~~ 94 (187)
...-..|+..|+.+.. +.+|...+..+... ++|.|=+|..+-.. ....+++.+......-++
T Consensus 160 ~~~l~~Lr~~G~~ialDDFG~g~ssl~~L~~l-----------~~d~iKID~s~v~~~~~~~~~~~il~~ii~la~~lg~ 228 (431)
T 2bas_A 160 YHMLAYYRTYGIKIAVDNIGKESSNLDRIALL-----------SPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKIGA 228 (431)
T ss_dssp HHHHHHHHTTTCEEEEEEETTTBCCHHHHHHH-----------CCSEEEEECTTTC----CCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCEEEEECCCCCcHHHHHHHhC-----------CCCEEEECHHHHhhhhcCHhHHHHHHHHHHHHHHcCC
Confidence 3344455678987775 66776667777433 56699999876432 133445544332210134
Q ss_pred cEEEEeCCCChhHHHHHHHhCCC---c-eeeCCCChH
Q 046192 95 PVVIMSSENIPSRINRCLEEGAE---E-FFLKPVQLA 127 (187)
Q Consensus 95 ~iI~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~~~ 127 (187)
.+| .-.-.+.+....+.+.|++ + |+.||....
T Consensus 229 ~vv-AEGVEt~~q~~~l~~lG~d~~QGy~f~~P~~~~ 264 (431)
T 2bas_A 229 ALL-YEDIEANFQLQYAWRNGGRYFQGYYLVSPSETF 264 (431)
T ss_dssp EEE-EECCCSHHHHHHHHHTTEEEECSTTTCCCBSSC
T ss_pred EEE-EEeCCCHHHHHHHHHcCCCEEeeCCcCCCCCch
Confidence 443 5555678888888899975 3 478887643
No 456
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=35.92 E-value=1.3e+02 Score=22.45 Aligned_cols=83 Identities=18% Similarity=0.121 Sum_probs=49.7
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCceEEEeC-CHH---HHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HH
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVD-SGN---KALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DL 81 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~-~~~---~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~ 81 (187)
...++||.+...-....+...|.+.|+.|..+. +.+ +..+.+.... ...+..+..++.+.+.+ ++
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~----------~~~~~~~~~Dv~d~~~v~~~ 109 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG----------AGNVIGVRLDVSDPGSCADA 109 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS----------SSCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC----------CCcEEEEEEeCCCHHHHHHH
Confidence 445788888888888999999988898887643 322 2333332111 12355555555554443 36
Q ss_pred HHHHHhhcCCCCCcEEEEeC
Q 046192 82 LRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~ls~ 101 (187)
++.+.+... .+-+++-.+
T Consensus 110 ~~~~~~~~g--~iD~lvnnA 127 (293)
T 3rih_A 110 ARTVVDAFG--ALDVVCANA 127 (293)
T ss_dssp HHHHHHHHS--CCCEEEECC
T ss_pred HHHHHHHcC--CCCEEEECC
Confidence 666666543 566766544
No 457
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=35.86 E-value=1e+02 Score=23.48 Aligned_cols=62 Identities=18% Similarity=0.271 Sum_probs=45.1
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHh---CCceEE--Ee---CCHHHHHHHHhccCcccccccccccccEEEEeccCCC
Q 046192 7 SQFHVLAVDDSIIDRKLIERLLKT---SSYQVT--AV---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG 75 (187)
Q Consensus 7 ~~~~ilivd~~~~~~~~l~~~l~~---~~~~v~--~~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~ 75 (187)
+.+-+++++++|.+..+++...+. .|+... .. .+.++.++.+...+.| ..+|=+++-+-+|.
T Consensus 34 P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D-------~~V~GIlvqlPLP~ 103 (288)
T 1b0a_A 34 PGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNAD-------NTIDGILVQLPLPA 103 (288)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTC-------TTCCEEEECSSCCT
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC-------CCCcEEEEeCCCCC
Confidence 567899999999999988877754 475443 23 2667888888776654 45778888887774
No 458
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=35.84 E-value=1.3e+02 Score=21.97 Aligned_cols=79 Identities=10% Similarity=0.115 Sum_probs=48.9
Q ss_pred hCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH-----------HHHHHHHHhhcCCCCCcEE
Q 046192 30 TSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG-----------YDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 30 ~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g-----------~~~~~~l~~~~~~~~~~iI 97 (187)
..|..+.. +.+..+. +.+... .+++|-.+-.+--+.| -+..+.+|.... ++++|
T Consensus 115 ~~GL~~ivcVge~~e~-~~~~~~-----------~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~--~~~il 180 (225)
T 1hg3_A 115 EVGLMTMVCSNNPAVS-AAVAAL-----------NPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNP--EVKVL 180 (225)
T ss_dssp HHTCEEEEEESSHHHH-HHHHTT-----------CCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCT--TSEEE
T ss_pred HCCCEEEEEeCCHHHH-HHHhcC-----------CCCEEEEeChhhhccCCCCCCCChhHHHHHHHHHHhccC--CCEEE
Confidence 46877665 4665555 333222 2347777665544333 234455665543 67777
Q ss_pred EEeCCCChhHHHHHHHhCCCceeeC
Q 046192 98 IMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 98 ~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
.=++-...+....+...|+|++|.=
T Consensus 181 yggsV~~~n~~~~~~~~~vDG~LVG 205 (225)
T 1hg3_A 181 CGAGISTGEDVKKAIELGTVGVLLA 205 (225)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEES
T ss_pred EeCCCCcHHHHHHHHhCCCCEEEeC
Confidence 6667677888888889999999864
No 459
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=35.81 E-value=1e+02 Score=20.98 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=47.9
Q ss_pred ceEEEEEeCCHHHH--HHHHHHHHhCCceEEE--e---CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCC---
Q 046192 8 QFHVLAVDDSIIDR--KLIERLLKTSSYQVTA--V---DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMT--- 77 (187)
Q Consensus 8 ~~~ilivd~~~~~~--~~l~~~l~~~~~~v~~--~---~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~--- 77 (187)
..||++++|.-... ..+.+.|... ..|.. . .+.....+.+...- ....||+|++.+-..+..
T Consensus 20 ~prVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~pd~Vvi~~G~ND~~~~~ 91 (200)
T 4h08_A 20 LPHVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVVL-------KNTKFDVIHFNNGLHGFDYTE 91 (200)
T ss_dssp SCEEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHHH-------HHSCCSEEEECCCSSCTTSCH
T ss_pred CCeEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHHH-------hcCCCCeEEEEeeeCCCCCCH
Confidence 46899999987643 3445555432 23332 1 12233333332110 234578999977665531
Q ss_pred ------HHHHHHHHHhhcCCCCCcEEEEeCC
Q 046192 78 ------GYDLLRKIKESASLKDIPVVIMSSE 102 (187)
Q Consensus 78 ------g~~~~~~l~~~~~~~~~~iI~ls~~ 102 (187)
--++++.+++..+ +.+||+++..
T Consensus 92 ~~~~~~l~~ii~~l~~~~p--~~~ii~~~~~ 120 (200)
T 4h08_A 92 EEYDKSFPKLIKIIRKYAP--KAKLIWANTT 120 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCT--TCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhhhCC--CccEEEeccC
Confidence 1246777888776 7888877654
No 460
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=35.74 E-value=1.2e+02 Score=21.72 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=35.7
Q ss_pred CHHHHHHHHHhhcCCCCCcEE--EEeCCCChhHHHHHHHhCCCceeeCCCChHHH-HHHHHHH
Q 046192 77 TGYDLLRKIKESASLKDIPVV--IMSSENIPSRINRCLEEGAEEFFLKPVQLADV-NKLKPHL 136 (187)
Q Consensus 77 ~g~~~~~~l~~~~~~~~~~iI--~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l-~~~i~~~ 136 (187)
.|.+.++.|++.. +.|+. +++. +...++..+.+.|++.........++. .+.++.+
T Consensus 51 ~~~~~~~~lr~~~---~~~~~v~lmv~-d~~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~i 109 (228)
T 1h1y_A 51 IGAPVIQSLRKHT---KAYLDCHLMVT-NPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSI 109 (228)
T ss_dssp BCHHHHHHHHTTC---CSEEEEEEESS-CGGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHH
T ss_pred hCHHHHHHHHhhc---CCcEEEEEEec-CHHHHHHHHHHcCCCEEEECCCCcccHHHHHHHHH
Confidence 4789999998754 33444 5554 356678889999999886654433333 4444444
No 461
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=35.73 E-value=1.3e+02 Score=22.07 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCceEEEeCCHH------HHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCC
Q 046192 21 RKLIERLLKTSSYQVTAVDSGN------KALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDI 94 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~~~~~------~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~ 94 (187)
...+.+.+++.||.+..+.... +.++.+ ....+|-+|+-..... + +.++.+++. .+
T Consensus 46 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdgiIi~~~~~~-~--~~~~~l~~~----~i 107 (305)
T 3huu_A 46 LNGINQACNVRGYSTRMTVSENSGDLYHEVKTMI-----------QSKSVDGFILLYSLKD-D--PIEHLLNEF----KV 107 (305)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHH-----------HTTCCSEEEESSCBTT-C--HHHHHHHHT----TC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHH-----------HhCCCCEEEEeCCcCC-c--HHHHHHHHc----CC
Confidence 3455566667799888754322 223333 2334666665322211 1 456666553 67
Q ss_pred cEEEEeCC
Q 046192 95 PVVIMSSE 102 (187)
Q Consensus 95 ~iI~ls~~ 102 (187)
|+|++...
T Consensus 108 PvV~i~~~ 115 (305)
T 3huu_A 108 PYLIVGKS 115 (305)
T ss_dssp CEEEESCC
T ss_pred CEEEECCC
Confidence 88887654
No 462
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=35.57 E-value=1.4e+02 Score=23.53 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=57.6
Q ss_pred HHHHHHhCCceEEE--eCCHHHHHHHHhccCcccccccccccccEEEEeccCCC---CC--HHHHHHHHHhhcCCCCCcE
Q 046192 24 IERLLKTSSYQVTA--VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG---MT--GYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 24 l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~---~~--g~~~~~~l~~~~~~~~~~i 96 (187)
.-..|++.|+.+.. +.+|...+..+.. -++|.|=+|-.+-. .+ ...+++.+......-++++
T Consensus 328 ~~~~l~~~G~~ialDdfG~g~ssl~~L~~-----------l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~l~~~v 396 (430)
T 3pjx_A 328 LTRRLRELGFSLSLQRFGGRFSMIGNLAR-----------LGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPL 396 (430)
T ss_dssp HHHHHHHHTCEEEEEEECCCHHHHCTHHH-----------HCCSCEEECGGGTTTTTTCHHHHHHHHHHHHHHHTTTCCE
T ss_pred HHHHHHHCCCEEEEeCCCCCchhHHHHHh-----------CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCcE
Confidence 33556777987775 7888888888844 45669999964432 22 3345555544332225555
Q ss_pred EEEeCCCChhHHHHHHHhCCC---c-eeeCCCC
Q 046192 97 VIMSSENIPSRINRCLEEGAE---E-FFLKPVQ 125 (187)
Q Consensus 97 I~ls~~~~~~~~~~a~~~ga~---~-yl~kP~~ 125 (187)
| .-.-.+.+....+.+.|++ + |+.||..
T Consensus 397 i-aeGVEt~~~~~~l~~~g~~~~QG~~~~~P~p 428 (430)
T 3pjx_A 397 I-AERVETEGELSVIREMGLYGVQGQLFGEPKP 428 (430)
T ss_dssp E-ECCCCCHHHHHHHHHTTCSEEESGGGCCCBC
T ss_pred E-EEecCCHHHHHHHHHcCCCeecccccCCCCC
Confidence 4 5555678888888899986 3 4777754
No 463
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=35.55 E-value=82 Score=24.12 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCceEEEe--CCHHHHHHHHhccCcccccccccccccEEEEeccCCC
Q 046192 19 IDRKLIERLLKTSSYQVTAV--DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPG 75 (187)
Q Consensus 19 ~~~~~l~~~l~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~ 75 (187)
.....|...|+..||+|... -+..+..+.+...... .+...|++++=+.-.|
T Consensus 94 ~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~-----~h~~~d~~vv~ilsHG 147 (305)
T 1f1j_A 94 KDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEE-----DHTNAACFACILLSHG 147 (305)
T ss_dssp HHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHHS-----CGGGEEEEEEEEESCE
T ss_pred HHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHh-----hcCCCCEEEEEEecCC
Confidence 46788999999999999875 3555555555443221 2345777666554444
No 464
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=35.49 E-value=89 Score=21.93 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=38.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCc--eEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCC
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSY--QVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMP 74 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~--~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~ 74 (187)
..+|.-+|-++......++.++..|. .+.. ..+..+.+..+.... ....||+|++|....
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~-------~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKY-------DVDTLDMVFLDHWKD 145 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTS-------CCCCCSEEEECSCGG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhc-------CCCceEEEEEcCCcc
Confidence 46899999999999999988877664 2443 456555433321000 114699999997443
No 465
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=35.47 E-value=1.2e+02 Score=21.84 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=24.7
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
++++.+++. +.+|.+.|- .+.+.+..+++.|+++.++-
T Consensus 198 ~~v~~~~~~----G~~v~~wTv-n~~~~~~~l~~~GvdgI~TD 235 (247)
T 2otd_A 198 ARVMQLKDA----GLRILVYTV-NKPQHAAELLRWGVDCICTD 235 (247)
T ss_dssp HHHHHHHHT----TCEEEEECC-CCHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHC----CCEEEEEcc-CCHHHHHHHHHcCCCEEEeC
Confidence 455565553 566777764 35667777777887776654
No 466
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=35.47 E-value=1.2e+02 Score=23.04 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHH
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLK 133 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i 133 (187)
++++.+++. +++|.+.|- .+.+.+..+++.|+++.++- .++.+.+.+
T Consensus 259 ~~v~~~~~~----Gl~V~~WTV-n~~~~~~~l~~~GVDgIiTD--~P~~~~~~l 305 (313)
T 3l12_A 259 ELVAEAHDL----GLIVLTWTV-NEPEDIRRMATTGVDGIVTD--YPGRTQRIL 305 (313)
T ss_dssp HHHHHHHHT----TCEEEEBCC-CSHHHHHHHHHHTCSEEEES--CHHHHHHHH
T ss_pred HHHHHHHHC----CCEEEEEcC-CCHHHHHHHHHcCCCEEEeC--CHHHHHHHH
Confidence 456666654 678888885 47888999999999999874 344444443
No 467
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=35.43 E-value=73 Score=19.87 Aligned_cols=37 Identities=24% Similarity=0.164 Sum_probs=22.2
Q ss_pred EEEEeccCCCCC-------HHHHHHHHHhhcCCCCCcEEEEeCCCChh
Q 046192 66 LIITDYCMPGMT-------GYDLLRKIKESASLKDIPVVIMSSENIPS 106 (187)
Q Consensus 66 lvi~d~~~~~~~-------g~~~~~~l~~~~~~~~~~iI~ls~~~~~~ 106 (187)
++++|++---.+ ..++++.+++. ..++.++|+.....
T Consensus 4 ~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~----G~~~~i~S~~~~~~ 47 (137)
T 2pr7_A 4 GLIVDYAGVLDGTDEDQRRWRNLLAAAKKN----GVGTVILSNDPGGL 47 (137)
T ss_dssp EEEECSTTTTSSCHHHHHHHHHHHHHHHHT----TCEEEEEECSCCGG
T ss_pred EEEEeccceecCCCccCccHHHHHHHHHHC----CCEEEEEeCCCHHH
Confidence 677777432111 33566677664 56888888875544
No 468
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=35.40 E-value=1.2e+02 Score=21.54 Aligned_cols=105 Identities=14% Similarity=0.075 Sum_probs=53.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcc------Cc-ccccc--cccccccEEEEeccCCCCCH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLL------NE-DEQTN--SQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~------~~-~~~~~--~~~~~~dlvi~d~~~~~~~g 78 (187)
..+|+|++.. .+...+.+.|...|+ |..+....+.++.+... .+ ++.++ ..-...|.|++-..-. ...
T Consensus 9 ~~~viI~G~G-~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d-~~n 85 (234)
T 2aef_A 9 SRHVVICGWS-ESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESD-SET 85 (234)
T ss_dssp -CEEEEESCC-HHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCH-HHH
T ss_pred CCEEEEECCC-hHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCc-HHH
Confidence 4567777775 344556666665666 66554433333332100 00 00000 0123467777754321 123
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
..++..+++.++ ..++++-.. +..........|++..
T Consensus 86 ~~~~~~a~~~~~--~~~iia~~~--~~~~~~~l~~~G~~~v 122 (234)
T 2aef_A 86 IHCILGIRKIDE--SVRIIAEAE--RYENIEQLRMAGADQV 122 (234)
T ss_dssp HHHHHHHHHHCS--SSEEEEECS--SGGGHHHHHHHTCSEE
T ss_pred HHHHHHHHHHCC--CCeEEEEEC--CHhHHHHHHHCCCCEE
Confidence 345566677665 566666554 3455556667898854
No 469
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=35.38 E-value=1.4e+02 Score=22.43 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=53.5
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHh
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTA-VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKE 87 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 87 (187)
++|.||+--..-...+..+....++++.. +....+..+.+.... ...-+.- +- -+.+ .
T Consensus 2 ~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~~----------~~~~~~~-------~~---~~~l-~ 60 (325)
T 2ho3_A 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRY----------QNIQLFD-------QL---EVFF-K 60 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGGS----------SSCEEES-------CH---HHHH-T
T ss_pred eEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc----------CCCeEeC-------CH---HHHh-C
Confidence 68899988766555444444434576654 443333333332111 0001111 11 1222 1
Q ss_pred hcCCCCCcEEEEeCCC--ChhHHHHHHHhCCCceeeCCC--ChHHHHHHHHHH
Q 046192 88 SASLKDIPVVIMSSEN--IPSRINRCLEEGAEEFFLKPV--QLADVNKLKPHL 136 (187)
Q Consensus 88 ~~~~~~~~iI~ls~~~--~~~~~~~a~~~ga~~yl~kP~--~~~~l~~~i~~~ 136 (187)
+ ++-+|+++... ..+.+..+++.|.+=++-||+ +.++..+.++.+
T Consensus 61 --~--~~D~V~i~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a 109 (325)
T 2ho3_A 61 --S--SFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTA 109 (325)
T ss_dssp --S--SCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHH
T ss_pred --C--CCCEEEEeCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHH
Confidence 1 44555555443 346677888999888889987 455544444433
No 470
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=35.17 E-value=45 Score=23.13 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=44.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEecc-CCCCCHHHHHHHHHhhc
Q 046192 11 VLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC-MPGMTGYDLLRKIKESA 89 (187)
Q Consensus 11 ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~-~~~~~g~~~~~~l~~~~ 89 (187)
|+|+|........+.+.|++.|..+..+.... ..+.+.. ..+|.+|+--- .+...+ ...+.++...
T Consensus 3 i~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~-----------~~~dglil~Gg~~~~~~~-~~~~~i~~~~ 69 (189)
T 1wl8_A 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKA-----------MNPKGIIFSGGPSLENTG-NCEKVLEHYD 69 (189)
T ss_dssp EEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHH-----------TCCSEEEECCCSCTTCCT-THHHHHHTGG
T ss_pred EEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcc-----------cCCCEEEECCCCChhhhh-hHHHHHHHHh
Confidence 89999888778889999999898777655432 1222211 12555555332 222222 1344455431
Q ss_pred CCCCCcEEEEeC
Q 046192 90 SLKDIPVVIMSS 101 (187)
Q Consensus 90 ~~~~~~iI~ls~ 101 (187)
. .+.|++-+.-
T Consensus 70 ~-~~~PilGIC~ 80 (189)
T 1wl8_A 70 E-FNVPILGICL 80 (189)
T ss_dssp G-TCSCEEEETH
T ss_pred h-CCCeEEEEcH
Confidence 1 2789988775
No 471
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=35.14 E-value=1.1e+02 Score=22.43 Aligned_cols=49 Identities=12% Similarity=0.290 Sum_probs=33.0
Q ss_pred cccEEEEeccCCCC---CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 63 QVNLIITDYCMPGM---TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 63 ~~dlvi~d~~~~~~---~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
-.|++.+-.. .+. +-+++++.+|+ . ++|+++++...+. +..|+++++.-
T Consensus 33 GaD~IelG~S-~g~t~~~~~~~v~~ir~--~--~~Pivl~~y~~n~------i~~gvDg~iip 84 (234)
T 2f6u_A 33 GTDAVMISGT-QNVTYEKARTLIEKVSQ--Y--GLPIVVEPSDPSN------VVYDVDYLFVP 84 (234)
T ss_dssp TCSEEEECCC-TTCCHHHHHHHHHHHTT--S--CCCEEECCSSCCC------CCCCSSEEEEE
T ss_pred CCCEEEECCC-CCCCHHHHHHHHHHhcC--C--CCCEEEecCCcch------hhcCCCEEEEc
Confidence 3567777763 222 24566677765 2 8999999887432 27799999876
No 472
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=35.10 E-value=80 Score=19.52 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCceEEE---eCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCC
Q 046192 18 IIDRKLIERLLKTSSYQVTA---VDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDI 94 (187)
Q Consensus 18 ~~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~ 94 (187)
....+.+...++.....+.. |+.-..+...+... ....-.+|+.....++.++.+.+.+......+
T Consensus 6 ~~~~~~~~~~i~~~~v~vy~~~~Cp~C~~~~~~L~~~-----------~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tv 74 (113)
T 3rhb_A 6 SRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRL-----------GVQPLVVELDQLGPQGPQLQKVLERLTGQHTV 74 (113)
T ss_dssp CHHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHHHT-----------TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHhcCCEEEEECCCChhHHHHHHHHHHc-----------CCCCeEEEeecCCCChHHHHHHHHHHhCCCCc
Confidence 44566777777776654544 44455666666432 23345667654333466666777665445689
Q ss_pred cEEEEeC
Q 046192 95 PVVIMSS 101 (187)
Q Consensus 95 ~iI~ls~ 101 (187)
|.|++.+
T Consensus 75 P~ifi~g 81 (113)
T 3rhb_A 75 PNVFVCG 81 (113)
T ss_dssp CEEEETT
T ss_pred CEEEECC
Confidence 9997754
No 473
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=35.04 E-value=1.3e+02 Score=21.78 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCceEEEeC---CHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEE
Q 046192 21 RKLIERLLKTSSYQVTAVD---SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPVV 97 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI 97 (187)
...+.+.+++.||.+..+. +.....+.+... ....+|.+|+....+ ......++.+.+. ++|+|
T Consensus 24 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l--------~~~~vdgiIi~~~~~-~~~~~~~~~~~~~----~iPvV 90 (291)
T 3l49_A 24 YQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTL--------IAQKPDAIIEQLGNL-DVLNPWLQKINDA----GIPLF 90 (291)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH--------HHHCCSEEEEESSCH-HHHHHHHHHHHHT----TCCEE
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHH--------HHcCCCEEEEeCCCh-hhhHHHHHHHHHC----CCcEE
Confidence 4566666777888887653 222222222211 223466777653211 0123455555543 67888
Q ss_pred EEeCC
Q 046192 98 IMSSE 102 (187)
Q Consensus 98 ~ls~~ 102 (187)
++...
T Consensus 91 ~~~~~ 95 (291)
T 3l49_A 91 TVDTA 95 (291)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 77654
No 474
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=34.88 E-value=55 Score=23.05 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=27.4
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHH
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNK 43 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~ 43 (187)
-+|+|||----....+.+.|+..|+++....+.++
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~ 37 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISRDPQV 37 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHH
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHH
Confidence 37999997655566788899999998888877654
No 475
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=34.86 E-value=1.3e+02 Score=21.89 Aligned_cols=82 Identities=10% Similarity=-0.060 Sum_probs=46.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~l~ 86 (187)
..++||.+...-....+...|.+.|+.|..+....+.++.+....+ ..+..+..++.+.+.+ .+++.+.
T Consensus 5 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~Dv~~~~~~~~~~~~~~ 74 (281)
T 3m1a_A 5 AKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYP----------DRAEAISLDVTDGERIDVVAADVL 74 (281)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCT----------TTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc----------CCceEEEeeCCCHHHHHHHHHHHH
Confidence 4578888988888889999998889988865433322222211111 1244444444443333 3555555
Q ss_pred hhcCCCCCcEEEEeC
Q 046192 87 ESASLKDIPVVIMSS 101 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~ 101 (187)
+... .+-+++-.+
T Consensus 75 ~~~g--~id~lv~~A 87 (281)
T 3m1a_A 75 ARYG--RVDVLVNNA 87 (281)
T ss_dssp HHHS--CCSEEEECC
T ss_pred HhCC--CCCEEEECC
Confidence 5443 556666544
No 476
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=34.82 E-value=86 Score=24.47 Aligned_cols=40 Identities=8% Similarity=-0.010 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
++++..+++..+ .++|||....-.+.+.+.+++..||+..
T Consensus 262 ~~~v~~i~~~~~-~~ipIIg~GGI~s~~da~~~l~aGAd~V 301 (345)
T 3oix_A 262 LANVHAFYKRLN-PSIQIIGTGGVXTGRDAFEHILCGASMV 301 (345)
T ss_dssp HHHHHHHHTTSC-TTSEEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHcC-CCCcEEEECCCCChHHHHHHHHhCCCEE
Confidence 577888887642 2699999999999999999999999875
No 477
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=34.76 E-value=69 Score=22.98 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 78 GYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 78 g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.+++++.+++. ++||+....-.+.+.+.+++..||+.++.
T Consensus 175 ~~~~i~~~~~~----~ipvia~GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 175 DVALIEALCKA----GIAVIAEGKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp CHHHHHHHHHT----TCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHhC----CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 45778888763 68999888877799999999999998754
No 478
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=34.75 E-value=1.8e+02 Score=23.88 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=55.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeCC-----------------HHHHHHHHhccCcccccccccccccEEEEec
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVDS-----------------GNKALEFLGLLNEDEQTNSQVIQVNLIITDY 71 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~-----------------~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~ 71 (187)
.+++|++-...-. .+.+.|.+.|+.+..... ..+.++.+ .-...|.+++-.
T Consensus 349 ~~viIiG~G~~G~-~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~a-----------gi~~ad~vi~~~ 416 (565)
T 4gx0_A 349 ELIFIIGHGRIGC-AAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQA-----------GIDRASGIIVTT 416 (565)
T ss_dssp CCEEEECCSHHHH-HHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHH-----------TTTSCSEEEECC
T ss_pred CCEEEECCCHHHH-HHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhc-----------CccccCEEEEEC
Confidence 5677777766554 455556666666655431 22333443 233456777776
Q ss_pred cCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 72 CMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 72 ~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
.-. ..-+-.+...++.++ .+++|.-... .++.......|++..+.
T Consensus 417 ~~d-~~ni~~~~~ak~l~~--~~~iiar~~~--~~~~~~l~~~G~d~vi~ 461 (565)
T 4gx0_A 417 NDD-STNIFLTLACRHLHS--HIRIVARANG--EENVDQLYAAGADFVVS 461 (565)
T ss_dssp SCH-HHHHHHHHHHHHHCS--SSEEEEEESS--TTSHHHHHHHTCSEEEE
T ss_pred CCc-hHHHHHHHHHHHHCC--CCEEEEEECC--HHHHHHHHHcCCCEEEc
Confidence 542 233445566677765 6677776654 44555667889986654
No 479
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=34.71 E-value=36 Score=25.72 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=33.0
Q ss_pred ceEEEEEeC-----CH---HHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEecc
Q 046192 8 QFHVLAVDD-----SI---IDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYC 72 (187)
Q Consensus 8 ~~~ilivd~-----~~---~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~ 72 (187)
+.+|+|+-. +. .....+.+.|++.||++..+...+..+..+. ...+|+|+.-+.
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~-----------~~~~D~v~~~~h 74 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALK-----------DEGFVRAFNALH 74 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHH-----------HTTCCEEEECCC
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhh-----------hcCCCEEEEcCC
Confidence 467887764 11 2456777888888999998764433222332 234668876543
No 480
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=34.70 E-value=87 Score=23.61 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
++.++.+++..+ .++|||....-.+.+.+.+++..||+..
T Consensus 229 ~~~i~~v~~~~~-~~ipvi~~GGI~~~~da~~~l~~GAd~V 268 (311)
T 1jub_A 229 LANVRAFYTRLK-PEIQIIGTGGIETGQDAFEHLLCGATML 268 (311)
T ss_dssp HHHHHHHHTTSC-TTSEEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHhcC-CCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 567778877542 2799999999999999999999998865
No 481
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=34.66 E-value=1.4e+02 Score=22.48 Aligned_cols=84 Identities=8% Similarity=0.003 Sum_probs=47.6
Q ss_pred EEEEEe-CCHH---HHHHHHHHHHhCCceEE---Ee----CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 10 HVLAVD-DSII---DRKLIERLLKTSSYQVT---AV----DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 10 ~ilivd-~~~~---~~~~l~~~l~~~~~~v~---~~----~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
+|.++. ++.. ....+.+.+++.|..+. .+ .+....+..+... .+|.|++... +...
T Consensus 161 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~-----------~~dav~~~~~--~~~a 227 (386)
T 3sg0_A 161 KVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIAT-----------KPDAVFIASA--GTPA 227 (386)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHT-----------CCSEEEEECC--SGGG
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhc-----------CCCEEEEecC--cchH
Confidence 455444 4433 23455566666676553 12 2445556666433 4568887543 3457
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHH
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRI 108 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~ 108 (187)
..+++.+++.+- ..|++......+....
T Consensus 228 ~~~~~~~~~~g~--~~~~~~~~~~~~~~~~ 255 (386)
T 3sg0_A 228 VLPQKALRERGF--KGAIYQTHGVATEEFI 255 (386)
T ss_dssp HHHHHHHHHTTC--CSEEECCGGGCSHHHH
T ss_pred HHHHHHHHHcCC--CCcEEeccccCCHHHH
Confidence 788999988775 5676655444444444
No 482
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=34.61 E-value=1.3e+02 Score=21.89 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCceEEEeC-----CHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCc
Q 046192 21 RKLIERLLKTSSYQVTAVD-----SGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDLLRKIKESASLKDIP 95 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~~-----~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~ 95 (187)
...+.+.+++.||.+..+. +.....+.+... ....+|.+|+-...+. .....++.+++. ++|
T Consensus 22 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l--------~~~~vdgiii~~~~~~-~~~~~~~~~~~~----giP 88 (297)
T 3rot_A 22 FQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESA--------LATYPSGIATTIPSDT-AFSKSLQRANKL----NIP 88 (297)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHH--------HHTCCSEEEECCCCSS-TTHHHHHHHHHH----TCC
T ss_pred HHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHH--------HHcCCCEEEEeCCCHH-HHHHHHHHHHHC----CCC
Confidence 3455566667799887754 333332333211 2234677776432222 124566777664 678
Q ss_pred EEEEeCC
Q 046192 96 VVIMSSE 102 (187)
Q Consensus 96 iI~ls~~ 102 (187)
+|.+...
T Consensus 89 vV~~~~~ 95 (297)
T 3rot_A 89 VIAVDTR 95 (297)
T ss_dssp EEEESCC
T ss_pred EEEEcCC
Confidence 9888654
No 483
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=34.35 E-value=93 Score=24.48 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCcee
Q 046192 79 YDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFF 120 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl 120 (187)
+++++.+++..+ .++|||....-.+.+.+.+++..||+...
T Consensus 285 ~~~v~~i~~~v~-~~ipvI~~GGI~s~~da~~~l~~GAd~V~ 325 (367)
T 3zwt_A 285 TQTIREMYALTQ-GRVPIIGVGGVSSGQDALEKIRAGASLVQ 325 (367)
T ss_dssp HHHHHHHHHHTT-TCSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHcC-CCceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 478888888753 37999999999999999999999998753
No 484
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=34.33 E-value=1.4e+02 Score=22.17 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=56.5
Q ss_pred eEEEEEeCCH-----HHHHHHHHHHHhCCceEEEeCCHHHHHHH--HhccCcccccccccccccEEEEeccCCCCCHHHH
Q 046192 9 FHVLAVDDSI-----IDRKLIERLLKTSSYQVTAVDSGNKALEF--LGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDL 81 (187)
Q Consensus 9 ~~ilivd~~~-----~~~~~l~~~l~~~~~~v~~~~~~~~a~~~--l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 81 (187)
.+++++-... .....+.+.|++.|+++....+..+.+.. ....... .....+|+||+= |+|| .+
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~D~vi~~----GGDG-T~ 76 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLA----EIGQQADLAVVV----GGDG-NM 76 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHH----HHHHHCSEEEEC----SCHH-HH
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchh----hcccCCCEEEEE----cCcH-HH
Confidence 4677775521 23455777788889888765433222100 0000000 011246787763 5565 34
Q ss_pred HHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCChHHHHHHHHHHhhhh
Q 046192 82 LRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQLADVNKLKPHLMKGI 140 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~~~l~~~i~~~~~~~ 140 (187)
++.++.... .+.|++-+. .|-.+|+.. +.+.++.++++.+..+.
T Consensus 77 l~a~~~~~~-~~~P~lGI~-------------~Gt~gfla~-~~~~~~~~al~~i~~g~ 120 (292)
T 2an1_A 77 LGAARTLAR-YDINVIGIN-------------RGNLGFLTD-LDPDNALQQLSDVLEGR 120 (292)
T ss_dssp HHHHHHHTT-SSCEEEEBC-------------SSSCCSSCC-BCTTSHHHHHHHHHTTC
T ss_pred HHHHHHhhc-CCCCEEEEE-------------CCCcccCCc-CCHHHHHHHHHHHHcCC
Confidence 444444332 257887663 244566664 34666777888888774
No 485
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=34.30 E-value=1.3e+02 Score=21.84 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=47.5
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh-ccCcccccccccccccEEEEeccCCCCCHH-HHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLG-LLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~l 85 (187)
..++||.+...-....+...|.+.|+.|..+....+.++.+. .... ......+.++..++.+.+.+ .+++.+
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 105 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKS------AGYPGTLIPYRCDLSNEEDILSMFSAI 105 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHh------cCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 357899999999999999999888998877533322222221 1100 00011244444444444433 355555
Q ss_pred HhhcCCCCCcEEEEeC
Q 046192 86 KESASLKDIPVVIMSS 101 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~ 101 (187)
.+... .+-+++..+
T Consensus 106 ~~~~g--~iD~vi~~A 119 (279)
T 1xg5_A 106 RSQHS--GVDICINNA 119 (279)
T ss_dssp HHHHC--CCSEEEECC
T ss_pred HHhCC--CCCEEEECC
Confidence 55443 556666544
No 486
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=34.19 E-value=1.4e+02 Score=21.89 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=40.8
Q ss_pred ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeC
Q 046192 64 VNLIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLK 122 (187)
Q Consensus 64 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~k 122 (187)
..+|-+|. .......++++.+++... ++|+++=..-.+.+.+.+++ .||+..+.-
T Consensus 154 ~~~VYld~-sG~~~~~~~i~~i~~~~~--~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVG 208 (228)
T 3vzx_A 154 LPIFYLEY-SGVLGDIEAVKKTKAVLE--TSTLFYGGGIKDAETAKQYA-EHADVIVVG 208 (228)
T ss_dssp CSEEEEEC-TTSCCCHHHHHHHHHHCS--SSEEEEESSCCSHHHHHHHH-TTCSEEEEC
T ss_pred CCEEEecC-CCCcCCHHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHH-hCCCEEEEC
Confidence 45888888 332235789999998753 57888766667888888887 799988765
No 487
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=34.11 E-value=1.3e+02 Score=22.63 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCceEEEeC---CHHHHHHHHhccCccccccccc-ccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCcE
Q 046192 21 RKLIERLLKTSSYQVTAVD---SGNKALEFLGLLNEDEQTNSQV-IQVNLIITDYCMPGMTGYDLLRKIKESASLKDIPV 96 (187)
Q Consensus 21 ~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 96 (187)
...+.+.+++.|+.+..+. +.....+.+...- .. ..+|.||+-. .......+++.+++. .+|+
T Consensus 23 ~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i-------~~~~~vDgiIi~~--~~~~~~~~~~~~~~~----giPv 89 (350)
T 3h75_A 23 SQFMQAAARDLGLDLRILYAERDPQNTLQQARELF-------QGRDKPDYLMLVN--EQYVAPQILRLSQGS----GIKL 89 (350)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-------HSSSCCSEEEEEC--CSSHHHHHHHHHTTS----CCEE
T ss_pred HHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHH-------hcCCCCCEEEEeC--chhhHHHHHHHHHhC----CCcE
Confidence 3455556666798887643 2222222221110 11 3567777742 122234456665543 7899
Q ss_pred EEEeCCC
Q 046192 97 VIMSSEN 103 (187)
Q Consensus 97 I~ls~~~ 103 (187)
|++....
T Consensus 90 V~~~~~~ 96 (350)
T 3h75_A 90 FIVNSPL 96 (350)
T ss_dssp EEEESCC
T ss_pred EEEcCCC
Confidence 9887653
No 488
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=33.95 E-value=1.3e+02 Score=21.67 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=37.2
Q ss_pred cccEEEEeccCCCC-------CHHHHHHHHHhhcC--CCCCcEEEEeCCCChhHHHHHHHhCCCceee
Q 046192 63 QVNLIITDYCMPGM-------TGYDLLRKIKESAS--LKDIPVVIMSSENIPSRINRCLEEGAEEFFL 121 (187)
Q Consensus 63 ~~dlvi~d~~~~~~-------~g~~~~~~l~~~~~--~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~ 121 (187)
..|.|++-...|+. .+.+.++++++... ..+.||.+...- +.+.+..+.++||+.++.
T Consensus 134 ~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI-~~~~~~~~~~aGad~vvv 200 (230)
T 1tqj_A 134 VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGL-KPNNTWQVLEAGANAIVA 200 (230)
T ss_dssp GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSC-CTTTTHHHHHHTCCEEEE
T ss_pred cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 46777777666652 34666777766431 015677766554 457788889999998765
No 489
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=33.91 E-value=1.2e+02 Score=25.97 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=26.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Q 046192 9 FHVLAVDDSIIDRKLIERLLKTSSYQVTAVD 39 (187)
Q Consensus 9 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~ 39 (187)
.+|+|+|...-+...+.+.+...|+.+....
T Consensus 447 k~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~ 477 (645)
T 3r75_A 447 CRALIVDAEDHFTAMIAQQLSSLGLATEVCG 477 (645)
T ss_dssp CEEEEEESSCTHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 5899999998888999999999998777653
No 490
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=33.75 E-value=40 Score=25.38 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=57.0
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHHH---hCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHHHH
Q 046192 5 TDSQFHVLAVDDSIIDRKLIERLLK---TSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGYDL 81 (187)
Q Consensus 5 ~~~~~~ilivd~~~~~~~~l~~~l~---~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 81 (187)
.+.++||.||.--..-...+..+.. ..++.++.+.+... .. . .+.+- ..+--
T Consensus 4 ~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~----~a----------~--~~g~~-------~~~~~-- 58 (294)
T 1lc0_A 4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE----LG----------S--LDEVR-------QISLE-- 58 (294)
T ss_dssp CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC----CC----------E--ETTEE-------BCCHH--
T ss_pred CCCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchH----HH----------H--HcCCC-------CCCHH--
Confidence 4457899999987766655555543 23566665433211 00 0 11111 11221
Q ss_pred HHHHHhhcCCCCCcEEEEeCC--CChhHHHHHHHhCCCceeeCCCC--hHHHHHHHHHHh
Q 046192 82 LRKIKESASLKDIPVVIMSSE--NIPSRINRCLEEGAEEFFLKPVQ--LADVNKLKPHLM 137 (187)
Q Consensus 82 ~~~l~~~~~~~~~~iI~ls~~--~~~~~~~~a~~~ga~~yl~kP~~--~~~l~~~i~~~~ 137 (187)
+.+.. + ++-+|+++.. ...+.+..|+++|.+=++-||+. .++..+.++...
T Consensus 59 -ell~~--~--~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 113 (294)
T 1lc0_A 59 -DALRS--Q--EIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAA 113 (294)
T ss_dssp -HHHHC--S--SEEEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHH
T ss_pred -HHhcC--C--CCCEEEEeCCcHhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 22222 1 4455555543 45577888999999989999985 656555554443
No 491
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=33.75 E-value=1.4e+02 Score=22.04 Aligned_cols=54 Identities=9% Similarity=0.091 Sum_probs=40.8
Q ss_pred EEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCC
Q 046192 66 LIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKP 123 (187)
Q Consensus 66 lvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP 123 (187)
+|-++. .......++++++++... ++|+++=..-.+.+.+.++++ ||+..+.=.
T Consensus 158 ~VYl~s-~G~~~~~~~i~~i~~~~~--~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 158 IFYLEY-SGVLGDIEAVKKTKAVLE--TSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp EEEEEC-TTSCCCHHHHHHHHHTCS--SSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred EEEEeC-CCccChHHHHHHHHHhcC--CCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 777776 433455789999998653 678887677778899988888 999987653
No 492
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=33.69 E-value=58 Score=25.32 Aligned_cols=38 Identities=5% Similarity=-0.111 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCce
Q 046192 80 DLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEF 119 (187)
Q Consensus 80 ~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~y 119 (187)
+++..+++..+ .+|||....-.+.+.+.+.+.+||+..
T Consensus 266 ~~v~~~~~~~~--~~pIIg~GGI~s~~Da~e~i~aGAs~V 303 (354)
T 3tjx_A 266 ANINAFYRRCP--GKLIFGCGGVYTGEDAFLHVLAGASMV 303 (354)
T ss_dssp HHHHHHHHHCT--TSEEEEESSCCSHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHhcC--CCcEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 45666666654 789999999999999999999999864
No 493
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=33.66 E-value=1.4e+02 Score=21.73 Aligned_cols=85 Identities=8% Similarity=-0.012 Sum_probs=50.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCHH-HHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAV-DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTGY-DLLRKI 85 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~~~~l 85 (187)
..+|+|.+...-....+...|.+.|+.|... ....+..+.+...- .....++..+..++.+.+.+ .+++.+
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 98 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAI-------TESGGEAVAIPGDVGNAADIAAMFSAV 98 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH-------HHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHH-------HhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 3568888988888999999998899988653 43333333321110 11112355555555554443 466666
Q ss_pred HhhcCCCCCcEEEEeC
Q 046192 86 KESASLKDIPVVIMSS 101 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~ 101 (187)
.+... .+-+++..+
T Consensus 99 ~~~~g--~id~li~nA 112 (272)
T 4e3z_A 99 DRQFG--RLDGLVNNA 112 (272)
T ss_dssp HHHHS--CCCEEEECC
T ss_pred HHhCC--CCCEEEECC
Confidence 66544 566766544
No 494
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=33.66 E-value=65 Score=22.41 Aligned_cols=83 Identities=11% Similarity=0.112 Sum_probs=43.8
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCC--CHHHHHHHH
Q 046192 10 HVLAVDD--SIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGM--TGYDLLRKI 85 (187)
Q Consensus 10 ~ilivd~--~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~--~g~~~~~~l 85 (187)
+|.++.- .......+...|...|..+....+.......+....+ =|++|+ +..++. +-.++++..
T Consensus 47 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~----------~dvvI~-iS~sG~t~~~~~~~~~a 115 (201)
T 3fxa_A 47 KIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQK----------EDILIL-ISKGGNTGELLNLIPAC 115 (201)
T ss_dssp CEEEECCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCT----------TCEEEE-ECSSSCCHHHHTTHHHH
T ss_pred cEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCC----------CCEEEE-EeCCCCCHHHHHHHHHH
Confidence 4455443 3344455666666677767665543322222211222 244444 333443 344566677
Q ss_pred HhhcCCCCCcEEEEeCCCChhH
Q 046192 86 KESASLKDIPVVIMSSENIPSR 107 (187)
Q Consensus 86 ~~~~~~~~~~iI~ls~~~~~~~ 107 (187)
++. ..++|.+|+..+...
T Consensus 116 k~~----g~~vi~IT~~~~s~l 133 (201)
T 3fxa_A 116 KTK----GSTLIGVTENPDSVI 133 (201)
T ss_dssp HHH----TCEEEEEESCTTSHH
T ss_pred HHc----CCeEEEEECCCCChh
Confidence 765 679999998765543
No 495
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=33.57 E-value=2.5 Score=24.57 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=19.0
Q ss_pred hhhhhhcccccccCCCCCCCccC
Q 046192 164 DRTRTRLNDTIDINNDGLPDLEI 186 (187)
Q Consensus 164 ~~~~~~e~~~l~l~~~g~~~~ei 186 (187)
..++.++.+++.+..+|+|.+||
T Consensus 10 ~~L~~~e~~il~~~~~g~s~~eI 32 (74)
T 1fse_A 10 PLLTKREREVFELLVQDKTTKEI 32 (74)
T ss_dssp CCCCHHHHHHHHHHTTTCCHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHH
Confidence 44778899999999999998876
No 496
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=33.32 E-value=1.4e+02 Score=21.87 Aligned_cols=82 Identities=10% Similarity=-0.004 Sum_probs=50.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH-HHHHHHHH
Q 046192 8 QFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG-YDLLRKIK 86 (187)
Q Consensus 8 ~~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g-~~~~~~l~ 86 (187)
..++||.....-....+...|.+.|+.|..+....+.++.+..... ..+..+-.++.+.+. -.+++.+.
T Consensus 5 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~~ 74 (281)
T 3zv4_A 5 GEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG----------GNAVGVVGDVRSLQDQKRAAERCL 74 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTB----------TTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcC----------CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4578888988888889999998889988876544444444422111 124444444444433 34666666
Q ss_pred hhcCCCCCcEEEEeC
Q 046192 87 ESASLKDIPVVIMSS 101 (187)
Q Consensus 87 ~~~~~~~~~iI~ls~ 101 (187)
+... .+-+++..+
T Consensus 75 ~~~g--~iD~lvnnA 87 (281)
T 3zv4_A 75 AAFG--KIDTLIPNA 87 (281)
T ss_dssp HHHS--CCCEEECCC
T ss_pred HhcC--CCCEEEECC
Confidence 6543 566666544
No 497
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=33.19 E-value=1.4e+02 Score=24.91 Aligned_cols=65 Identities=17% Similarity=0.337 Sum_probs=46.1
Q ss_pred EEEEeccCCCC---CHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHH-hCCCceee------CCCChHHHHHHH
Q 046192 66 LIITDYCMPGM---TGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLE-EGAEEFFL------KPVQLADVNKLK 133 (187)
Q Consensus 66 lvi~d~~~~~~---~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~-~ga~~yl~------kP~~~~~l~~~i 133 (187)
+++.++.-.+. --+++++.+++.. .+|||.-..-.+.+.+.++++ .|+++.+. .|+...++.+.+
T Consensus 469 il~t~~~~dG~~~G~d~~li~~l~~~~---~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l 543 (555)
T 1jvn_A 469 ILLNCIDKDGSNSGYDLELIEHVKDAV---KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYL 543 (555)
T ss_dssp EEECCGGGTTTCSCCCHHHHHHHHHHC---SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHhC---CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHH
Confidence 44555543332 2367888888764 789998888889999999998 79888643 477777766543
No 498
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=33.10 E-value=44 Score=22.96 Aligned_cols=72 Identities=15% Similarity=0.311 Sum_probs=41.3
Q ss_pred cccEEEEeccCCC-CCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCc---eeeCCCChHHHHHHHHHHhh
Q 046192 63 QVNLIITDYCMPG-MTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEE---FFLKPVQLADVNKLKPHLMK 138 (187)
Q Consensus 63 ~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~---yl~kP~~~~~l~~~i~~~~~ 138 (187)
..|+||.+..-++ +.++|+--.... +.||+++........+ .++-.|... +-...++.+++...+...+.
T Consensus 77 ~aD~vva~~~~~d~Gt~~EiGyA~al-----gKPVi~l~~~~~~~~~-n~M~~g~~~~~~~~~~~y~~~el~~~l~~~~~ 150 (165)
T 2khz_A 77 QADVVVAEVTQPSLGVGYELGRAVAL-----GKPILCLFRPQSGRVL-SAMIRGAADGSRFQVWDYAEGEVETMLDRYFE 150 (165)
T ss_dssp HCSEEEEECSSCCHHHHHHHHHHHHT-----CSSEEEEECTTTTCCC-CHHHHHTCCSSSEEEEECCTTTHHHHHHHHHH
T ss_pred hCCEEEEECCCCCCCHHHHHHHHHHC-----CCEEEEEEcCCCCCcc-hhhhcccCccceeEEEecCHHHHHHHHHHHHH
Confidence 4679999886333 335555444332 6789998765421111 122234432 44445588888888888776
Q ss_pred hh
Q 046192 139 GI 140 (187)
Q Consensus 139 ~~ 140 (187)
+.
T Consensus 151 ~~ 152 (165)
T 2khz_A 151 AY 152 (165)
T ss_dssp TS
T ss_pred hc
Confidence 54
No 499
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=33.01 E-value=1.5e+02 Score=22.35 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=43.1
Q ss_pred EEEEE-eCCHH---HHHHHHHHHHhCCceEE---Ee----CCHHHHHHHHhccCcccccccccccccEEEEeccCCCCCH
Q 046192 10 HVLAV-DDSII---DRKLIERLLKTSSYQVT---AV----DSGNKALEFLGLLNEDEQTNSQVIQVNLIITDYCMPGMTG 78 (187)
Q Consensus 10 ~iliv-d~~~~---~~~~l~~~l~~~~~~v~---~~----~~~~~a~~~l~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g 78 (187)
+|.++ +++.. ....+.+.+++.|..+. .+ .+....+..+... .+|.|++.. .+...
T Consensus 143 ~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~-----------~~d~v~~~~--~~~~a 209 (364)
T 3lop_A 143 RIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAA-----------DVQAIFLGA--TAEPA 209 (364)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHS-----------CCSEEEEES--CHHHH
T ss_pred eEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhC-----------CCCEEEEec--CcHHH
Confidence 45444 44443 23455566666675443 22 2445566666433 456888854 23356
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeC
Q 046192 79 YDLLRKIKESASLKDIPVVIMSS 101 (187)
Q Consensus 79 ~~~~~~l~~~~~~~~~~iI~ls~ 101 (187)
..+++.+++.+- ..|++....
T Consensus 210 ~~~~~~~~~~g~--~~~~i~~~~ 230 (364)
T 3lop_A 210 AQFVRQYRARGG--EAQLLGLSS 230 (364)
T ss_dssp HHHHHHHHHTTC--CCEEEECTT
T ss_pred HHHHHHHHHcCC--CCeEEEecc
Confidence 678888888765 677654433
No 500
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=32.99 E-value=97 Score=24.51 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=43.2
Q ss_pred EEEEeccCCCCCHHHHHHHHHhhcCCCCCcEEEEeCCCChhHHHHHHHhCCCceeeCCCCh
Q 046192 66 LIITDYCMPGMTGYDLLRKIKESASLKDIPVVIMSSENIPSRINRCLEEGAEEFFLKPVQL 126 (187)
Q Consensus 66 lvi~d~~~~~~~g~~~~~~l~~~~~~~~~~iI~ls~~~~~~~~~~a~~~ga~~yl~kP~~~ 126 (187)
+=|+++..|+....+.+..|++.. ++|++.=.. -+...+..|.+.|++.+=+-|-+.
T Consensus 60 ~diVRvavp~~~~a~al~~I~~~~---~vPlvaDiH-f~~~lal~a~e~G~dklRINPGNi 116 (366)
T 3noy_A 60 CEIVRVAVPHKEDVEALEEIVKKS---PMPVIADIH-FAPSYAFLSMEKGVHGIRINPGNI 116 (366)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC---SSCEEEECC-SCHHHHHHHHHTTCSEEEECHHHH
T ss_pred CCEEEeCCCChHHHHHHHHHHhcC---CCCEEEeCC-CCHHHHHHHHHhCCCeEEECCccc
Confidence 446677778777778888998875 688875443 467888899999999976767654
Done!