BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046194
(934 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 641 GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLV 678
H D+ L S++K+ L H V +L AC+H G V
Sbjct: 88 AHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPV 125
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 641 GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLV 678
H D+ L S++K+ L H V +L AC+H G V
Sbjct: 88 AHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPV 125
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 641 GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLV 678
H D+ L S++K+ L H V +L AC+H G V
Sbjct: 88 AHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPV 125
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 641 GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLV 678
H D+ L S++K+ L H V +L AC+H G V
Sbjct: 88 AHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPV 125
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 641 GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLV 678
H D+ L S++K+ L H V +L AC+H G V
Sbjct: 80 AHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPV 117
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 641 GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLV 678
H D+ L S++K+ L H V +L AC+H G V
Sbjct: 73 AHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPV 110
>pdb|1VPV|A Chain A, Crystal Structure Of A Degv Lipid Binding Protein (Tm1468)
From Thermotoga Maritima At 2.45 A Resolution
pdb|1VPV|B Chain B, Crystal Structure Of A Degv Lipid Binding Protein (Tm1468)
From Thermotoga Maritima At 2.45 A Resolution
Length = 300
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 810 DGVHVFVAGDESHPEKDLIY-EKLKELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYHS 868
D + ++V ++ E D E++ +++R+AG VP+T + + K+ + Y
Sbjct: 36 DSIPLYVVWEDGRSEPDEREPEEIXNFYKRIREAGSVPKTSQPSVE---DFKKRYLKYKE 92
Query: 869 EKIAVAFVLTRNSKL 883
E V VLT +SKL
Sbjct: 93 EDYDVVLVLTLSSKL 107
>pdb|2IML|A Chain A, Crystal Structure Of A Hypothetical Protein From
Archaeoglobus Fulgidus Binding Riboflavin 5'-Phosphate
pdb|2IML|B Chain B, Crystal Structure Of A Hypothetical Protein From
Archaeoglobus Fulgidus Binding Riboflavin 5'-Phosphate
pdb|2IML|C Chain C, Crystal Structure Of A Hypothetical Protein From
Archaeoglobus Fulgidus Binding Riboflavin 5'-Phosphate
pdb|2IML|D Chain D, Crystal Structure Of A Hypothetical Protein From
Archaeoglobus Fulgidus Binding Riboflavin 5'-Phosphate
Length = 199
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 418 MPEHDQVSWNSV-IGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGK 476
+ E++ SWN+ IG + + + K Y + RA +GV F N+ A F++
Sbjct: 20 ITENEDGSWNAAPIGIIVEDSSSDTAKAKLYRNRTRANLERSGVLFANVTDDALVFAVSS 79
Query: 477 LGH 479
G+
Sbjct: 80 FGN 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,420,679
Number of Sequences: 62578
Number of extensions: 1035767
Number of successful extensions: 3153
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3145
Number of HSP's gapped (non-prelim): 9
length of query: 934
length of database: 14,973,337
effective HSP length: 108
effective length of query: 826
effective length of database: 8,214,913
effective search space: 6785518138
effective search space used: 6785518138
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)