Query 046194
Match_columns 934
No_of_seqs 785 out of 5047
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 09:37:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 9E-149 2E-153 1350.6 91.3 809 48-932 48-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1E-120 3E-125 1077.4 69.7 612 319-934 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.7E-90 3.7E-95 841.0 68.3 622 2-699 103-727 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.1E-68 2.4E-73 634.6 50.0 473 49-593 85-560 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.4E-67 3.1E-72 624.4 53.2 530 152-731 367-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 6.8E-67 1.5E-71 618.7 52.6 533 15-663 365-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.8E-36 6E-41 376.3 75.9 765 3-796 74-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.4E-36 9.6E-41 374.5 76.7 668 102-795 139-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.6E-32 3.5E-37 237.3 8.0 105 802-924 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 2E-21 4.3E-26 242.4 61.8 610 131-794 36-739 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.3E-20 2.9E-25 223.4 60.3 625 102-794 58-739 (987)
12 PRK11447 cellulose synthase su 99.9 7.7E-21 1.7E-25 237.2 57.0 590 161-796 34-701 (1157)
13 PRK09782 bacteriophage N4 rece 99.9 2.8E-18 6.1E-23 203.8 58.1 668 31-782 55-760 (987)
14 KOG4626 O-linked N-acetylgluco 99.8 3.6E-18 7.8E-23 178.4 34.2 449 325-791 51-515 (966)
15 KOG2002 TPR-containing nuclear 99.8 4.6E-16 1E-20 172.0 51.3 592 171-798 146-801 (1018)
16 KOG4626 O-linked N-acetylgluco 99.8 1.1E-16 2.4E-21 167.4 34.2 434 234-742 51-502 (966)
17 PRK11788 tetratricopeptide rep 99.8 4.3E-17 9.4E-22 181.5 27.8 295 333-663 46-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 4.6E-17 9.9E-22 181.3 27.9 290 504-802 45-354 (389)
19 TIGR00990 3a0801s09 mitochondr 99.8 2.3E-15 4.9E-20 176.7 40.6 246 540-794 308-570 (615)
20 KOG4318 Bicoid mRNA stability 99.8 4.1E-14 8.9E-19 154.7 45.2 702 6-797 11-810 (1088)
21 KOG4422 Uncharacterized conser 99.7 5.5E-14 1.2E-18 141.4 38.9 442 51-592 116-592 (625)
22 PRK15174 Vi polysaccharide exp 99.7 1.1E-14 2.3E-19 170.1 37.0 352 403-766 16-386 (656)
23 PRK10049 pgaA outer membrane p 99.7 3.4E-14 7.4E-19 169.7 41.3 357 426-794 52-455 (765)
24 KOG4422 Uncharacterized conser 99.7 1.6E-13 3.4E-18 138.2 38.5 440 196-724 118-587 (625)
25 PRK10049 pgaA outer membrane p 99.7 5.3E-14 1.1E-18 168.1 42.3 366 394-768 51-463 (765)
26 KOG2002 TPR-containing nuclear 99.7 4.9E-13 1.1E-17 148.5 45.0 462 307-778 252-762 (1018)
27 KOG4318 Bicoid mRNA stability 99.7 2.3E-13 5E-18 148.9 40.7 81 288-372 201-286 (1088)
28 PRK15174 Vi polysaccharide exp 99.7 4.1E-14 8.9E-19 165.3 35.6 327 458-796 41-382 (656)
29 TIGR00990 3a0801s09 mitochondr 99.7 2.5E-13 5.5E-18 159.4 42.3 248 528-793 333-595 (615)
30 PRK14574 hmsH outer membrane p 99.7 7.6E-13 1.6E-17 154.6 42.5 433 331-794 43-512 (822)
31 PRK14574 hmsH outer membrane p 99.6 7.2E-12 1.6E-16 146.5 43.7 438 300-768 43-520 (822)
32 KOG0495 HAT repeat protein [RN 99.6 9.2E-10 2E-14 117.3 50.1 462 299-809 414-892 (913)
33 KOG2076 RNA polymerase III tra 99.6 1.5E-10 3.2E-15 128.4 43.1 518 243-793 151-767 (895)
34 KOG2076 RNA polymerase III tra 99.6 9.7E-10 2.1E-14 122.1 48.8 613 138-790 153-890 (895)
35 KOG0495 HAT repeat protein [RN 99.5 7.3E-09 1.6E-13 110.6 46.8 423 339-781 363-802 (913)
36 KOG2003 TPR repeat-containing 99.5 2.5E-11 5.3E-16 123.1 25.1 482 232-782 202-710 (840)
37 PF13429 TPR_15: Tetratricopep 99.4 2.3E-13 5.1E-18 143.1 9.5 253 534-793 16-275 (280)
38 KOG1126 DNA-binding cell divis 99.4 1.5E-11 3.3E-16 132.0 22.5 264 542-842 335-607 (638)
39 KOG0547 Translocase of outer m 99.4 3.4E-10 7.4E-15 116.7 26.7 211 575-793 340-564 (606)
40 KOG1155 Anaphase-promoting com 99.3 7.5E-09 1.6E-13 106.5 33.3 253 534-794 235-494 (559)
41 KOG0985 Vesicle coat protein c 99.3 9.6E-07 2.1E-11 98.9 51.7 695 11-793 504-1247(1666)
42 PRK10747 putative protoheme IX 99.3 6.4E-10 1.4E-14 122.6 27.8 226 501-762 160-391 (398)
43 KOG1155 Anaphase-promoting com 99.3 3.5E-09 7.7E-14 108.8 30.4 357 387-790 159-531 (559)
44 TIGR00540 hemY_coli hemY prote 99.3 1.7E-09 3.7E-14 119.9 28.0 145 613-761 246-399 (409)
45 KOG1915 Cell cycle control pro 99.3 2.5E-07 5.5E-12 95.5 40.3 417 371-793 155-623 (677)
46 KOG1173 Anaphase-promoting com 99.3 1.5E-08 3.3E-13 107.0 32.3 260 492-793 242-516 (611)
47 PRK10747 putative protoheme IX 99.3 7.5E-09 1.6E-13 114.1 31.8 246 537-794 129-389 (398)
48 KOG1126 DNA-binding cell divis 99.3 4.7E-10 1E-14 120.8 20.9 270 510-794 335-619 (638)
49 TIGR00540 hemY_coli hemY prote 99.3 5.5E-09 1.2E-13 115.9 30.6 126 661-792 262-396 (409)
50 COG2956 Predicted N-acetylgluc 99.2 1.7E-08 3.7E-13 99.3 28.4 307 436-814 48-366 (389)
51 KOG2003 TPR repeat-containing 99.2 1.2E-08 2.6E-13 104.0 28.3 436 328-795 207-689 (840)
52 PF13429 TPR_15: Tetratricopep 99.2 7.5E-11 1.6E-15 124.1 12.8 191 496-689 80-275 (280)
53 PF13041 PPR_2: PPR repeat fam 99.2 2.2E-11 4.7E-16 89.3 4.9 50 153-206 1-50 (50)
54 PF13041 PPR_2: PPR repeat fam 99.2 5.8E-11 1.3E-15 87.0 6.4 50 524-573 1-50 (50)
55 KOG1915 Cell cycle control pro 99.2 2.1E-07 4.5E-12 96.1 34.0 390 406-805 87-510 (677)
56 KOG2047 mRNA splicing factor [ 99.2 2.6E-06 5.7E-11 91.5 43.2 498 232-758 103-720 (835)
57 TIGR02521 type_IV_pilW type IV 99.2 2.7E-09 5.8E-14 109.3 20.4 197 595-794 30-231 (234)
58 KOG3616 Selective LIM binding 99.1 3.8E-06 8.2E-11 91.0 41.5 257 503-793 741-1022(1636)
59 KOG1840 Kinesin light chain [C 99.1 2.7E-08 5.8E-13 108.9 23.7 244 494-793 199-477 (508)
60 KOG1174 Anaphase-promoting com 99.0 1E-06 2.2E-11 89.7 31.9 301 456-765 191-504 (564)
61 COG2956 Predicted N-acetylgluc 99.0 1.5E-07 3.2E-12 92.8 25.1 185 498-724 145-344 (389)
62 COG3071 HemY Uncharacterized e 99.0 3.5E-07 7.7E-12 93.2 28.6 285 437-759 98-388 (400)
63 KOG4162 Predicted calmodulin-b 99.0 3.1E-06 6.7E-11 93.3 37.6 441 286-794 318-782 (799)
64 KOG3616 Selective LIM binding 99.0 0.0001 2.3E-09 80.3 48.0 534 162-785 739-1381(1636)
65 KOG2047 mRNA splicing factor [ 99.0 1.3E-05 2.9E-10 86.3 39.3 489 293-794 104-686 (835)
66 COG3071 HemY Uncharacterized e 99.0 3.2E-07 7E-12 93.5 25.5 249 539-794 97-356 (400)
67 KOG1129 TPR repeat-containing 99.0 2.7E-08 5.9E-13 97.6 17.2 229 497-795 226-458 (478)
68 PRK12370 invasion protein regu 99.0 8.8E-08 1.9E-12 110.6 24.6 242 542-795 277-535 (553)
69 KOG0547 Translocase of outer m 98.9 7.5E-07 1.6E-11 92.7 26.6 215 437-689 340-564 (606)
70 KOG2376 Signal recognition par 98.9 6.9E-06 1.5E-10 87.8 34.2 179 600-788 313-513 (652)
71 PRK11189 lipoprotein NlpI; Pro 98.9 1.6E-07 3.4E-12 99.1 20.7 210 575-795 40-265 (296)
72 KOG0985 Vesicle coat protein c 98.9 0.0005 1.1E-08 78.0 48.9 327 377-743 967-1326(1666)
73 KOG2376 Signal recognition par 98.9 1.8E-05 3.8E-10 84.8 34.1 364 215-622 31-443 (652)
74 TIGR02521 type_IV_pilW type IV 98.9 3.1E-07 6.7E-12 93.9 21.2 199 526-761 31-232 (234)
75 PRK12370 invasion protein regu 98.8 1.8E-07 3.9E-12 108.0 21.1 209 575-794 275-501 (553)
76 KOG3785 Uncharacterized conser 98.8 1.8E-05 3.8E-10 79.1 30.9 177 611-802 338-521 (557)
77 KOG3617 WD40 and TPR repeat-co 98.8 7.1E-05 1.5E-09 82.8 37.9 570 20-724 726-1356(1416)
78 KOG1840 Kinesin light chain [C 98.8 5.7E-07 1.2E-11 98.7 22.1 243 291-588 199-477 (508)
79 COG3063 PilF Tfp pilus assembl 98.8 3.2E-07 7E-12 86.5 16.9 161 630-797 38-204 (250)
80 KOG1173 Anaphase-promoting com 98.8 6E-06 1.3E-10 87.9 28.1 284 389-741 241-533 (611)
81 KOG3785 Uncharacterized conser 98.8 6.4E-05 1.4E-09 75.2 33.2 442 298-796 29-491 (557)
82 KOG1156 N-terminal acetyltrans 98.7 0.00016 3.4E-09 78.7 37.4 374 302-724 52-465 (700)
83 KOG3617 WD40 and TPR repeat-co 98.7 4.9E-05 1.1E-09 84.0 33.1 345 291-689 757-1172(1416)
84 KOG1156 N-terminal acetyltrans 98.7 7.6E-05 1.6E-09 81.0 32.9 109 698-808 371-486 (700)
85 PRK11189 lipoprotein NlpI; Pro 98.7 3.8E-06 8.2E-11 88.6 23.0 202 564-775 67-280 (296)
86 KOG4162 Predicted calmodulin-b 98.7 0.00085 1.8E-08 74.7 40.6 377 387-793 318-747 (799)
87 KOG1174 Anaphase-promoting com 98.6 5E-05 1.1E-09 77.7 28.4 278 525-841 231-520 (564)
88 PF12569 NARP1: NMDA receptor- 98.6 0.00011 2.4E-09 82.0 33.9 285 299-622 12-331 (517)
89 KOG1127 TPR repeat-containing 98.6 0.00028 6.1E-09 80.3 35.7 172 171-350 474-658 (1238)
90 KOG1127 TPR repeat-containing 98.6 0.0015 3.2E-08 74.7 41.0 638 107-776 475-1190(1238)
91 COG3063 PilF Tfp pilus assembl 98.6 1.1E-05 2.5E-10 76.3 19.9 190 571-766 45-241 (250)
92 PF04733 Coatomer_E: Coatomer 98.6 2E-06 4.3E-11 89.2 16.2 249 504-766 11-270 (290)
93 PF12569 NARP1: NMDA receptor- 98.5 3.1E-05 6.8E-10 86.3 26.0 123 666-793 198-332 (517)
94 PF12854 PPR_1: PPR repeat 98.5 6.8E-08 1.5E-12 63.3 3.0 34 14-47 1-34 (34)
95 KOG1129 TPR repeat-containing 98.5 5.5E-06 1.2E-10 81.8 15.5 224 326-554 227-457 (478)
96 KOG0624 dsRNA-activated protei 98.4 0.00025 5.5E-09 70.9 26.4 307 398-768 44-377 (504)
97 KOG0548 Molecular co-chaperone 98.4 0.00016 3.4E-09 77.1 26.7 85 240-350 11-98 (539)
98 cd05804 StaR_like StaR_like; a 98.4 0.00016 3.5E-09 79.3 28.6 292 498-795 10-336 (355)
99 KOG1125 TPR repeat-containing 98.4 1.2E-05 2.6E-10 86.2 18.2 249 571-840 295-556 (579)
100 PF12854 PPR_1: PPR repeat 98.4 2.7E-07 5.9E-12 60.4 3.4 34 225-258 1-34 (34)
101 PF04733 Coatomer_E: Coatomer 98.4 4.7E-06 1E-10 86.5 13.6 243 535-794 10-264 (290)
102 TIGR03302 OM_YfiO outer membra 98.3 2.9E-05 6.3E-10 79.4 18.1 179 595-795 32-232 (235)
103 KOG1914 mRNA cleavage and poly 98.3 0.0079 1.7E-07 64.4 35.3 431 288-724 17-536 (656)
104 PRK15359 type III secretion sy 98.3 1.5E-05 3.2E-10 73.8 13.1 122 647-777 13-137 (144)
105 cd05804 StaR_like StaR_like; a 98.3 0.00073 1.6E-08 74.1 28.6 265 526-795 6-293 (355)
106 PRK10370 formate-dependent nit 98.2 4.6E-05 1E-09 74.6 16.3 117 675-795 52-173 (198)
107 PRK04841 transcriptional regul 98.2 0.0043 9.3E-08 77.5 38.0 193 498-690 535-759 (903)
108 PRK15363 pathogenicity island 98.2 2.2E-05 4.8E-10 71.1 12.6 119 698-841 35-155 (157)
109 PRK04841 transcriptional regul 98.2 0.0043 9.4E-08 77.5 36.2 155 398-553 347-518 (903)
110 PLN02789 farnesyltranstransfer 98.1 0.00034 7.4E-09 73.7 21.0 171 606-779 81-268 (320)
111 KOG1128 Uncharacterized conser 98.1 8.6E-05 1.9E-09 81.8 16.5 196 591-795 393-616 (777)
112 PRK10370 formate-dependent nit 98.1 0.00017 3.7E-09 70.6 17.3 156 603-772 23-184 (198)
113 COG5010 TadD Flp pilus assembl 98.1 0.00014 3E-09 70.8 15.9 132 659-794 63-196 (257)
114 PRK15179 Vi polysaccharide bio 98.1 0.00011 2.4E-09 85.3 18.2 187 562-770 28-226 (694)
115 KOG1128 Uncharacterized conser 98.1 0.00057 1.2E-08 75.6 22.2 218 488-724 392-613 (777)
116 KOG1125 TPR repeat-containing 98.1 0.00015 3.2E-09 78.0 17.2 238 504-752 295-562 (579)
117 KOG4340 Uncharacterized conser 98.1 0.0017 3.6E-08 63.9 22.7 283 295-586 14-335 (459)
118 KOG4340 Uncharacterized conser 98.1 0.00075 1.6E-08 66.3 20.1 177 608-790 124-334 (459)
119 PRK15359 type III secretion sy 98.1 5.9E-05 1.3E-09 69.7 12.5 97 694-794 22-120 (144)
120 KOG1070 rRNA processing protei 98.1 0.00018 3.9E-09 84.5 18.8 196 595-797 1457-1665(1710)
121 KOG1070 rRNA processing protei 98.0 0.00055 1.2E-08 80.6 21.5 239 513-760 1444-1699(1710)
122 TIGR00756 PPR pentatricopeptid 98.0 8.6E-06 1.9E-10 54.3 4.2 35 156-194 1-35 (35)
123 KOG0548 Molecular co-chaperone 98.0 0.013 2.9E-07 62.9 29.6 166 603-779 305-473 (539)
124 KOG2053 Mitochondrial inherita 98.0 0.06 1.3E-06 61.6 41.8 215 166-418 20-252 (932)
125 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.5E-10 53.6 4.4 35 323-357 1-35 (35)
126 KOG3081 Vesicle coat complex C 98.0 0.0025 5.4E-08 62.1 21.3 176 583-766 95-276 (299)
127 COG5010 TadD Flp pilus assembl 97.9 0.00037 7.9E-09 67.9 15.5 150 633-788 72-224 (257)
128 COG4783 Putative Zn-dependent 97.9 0.0022 4.7E-08 68.1 21.6 118 672-793 316-435 (484)
129 PRK15179 Vi polysaccharide bio 97.9 0.00065 1.4E-08 79.1 19.6 143 591-738 81-230 (694)
130 TIGR03302 OM_YfiO outer membra 97.9 0.00041 8.8E-09 70.9 16.3 182 559-763 31-234 (235)
131 TIGR02552 LcrH_SycD type III s 97.9 0.00024 5.1E-09 65.3 12.9 95 698-794 17-113 (135)
132 KOG0624 dsRNA-activated protei 97.9 0.043 9.4E-07 55.5 29.8 173 492-690 187-369 (504)
133 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00043 9.3E-09 74.4 15.8 122 665-793 172-295 (395)
134 PF13812 PPR_3: Pentatricopept 97.8 2.7E-05 5.8E-10 51.5 4.0 34 155-192 1-34 (34)
135 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00031 6.8E-09 75.4 13.8 128 596-728 169-298 (395)
136 COG4783 Putative Zn-dependent 97.8 0.0024 5.1E-08 67.9 19.8 139 634-796 313-455 (484)
137 PLN02789 farnesyltranstransfer 97.8 0.0016 3.5E-08 68.7 18.6 185 603-792 44-247 (320)
138 PF13812 PPR_3: Pentatricopept 97.8 3.8E-05 8.1E-10 50.7 4.2 34 322-355 1-34 (34)
139 PF01535 PPR: PPR repeat; Int 97.8 3.2E-05 6.9E-10 49.8 3.5 31 156-186 1-31 (31)
140 PRK14720 transcript cleavage f 97.6 0.0071 1.5E-07 71.3 21.7 80 563-655 118-197 (906)
141 TIGR02552 LcrH_SycD type III s 97.6 0.0011 2.4E-08 60.8 12.5 114 649-768 5-121 (135)
142 PF01535 PPR: PPR repeat; Int 97.5 0.0001 2.2E-09 47.3 3.4 31 52-82 1-31 (31)
143 PRK14720 transcript cleavage f 97.4 0.049 1.1E-06 64.5 25.2 27 392-418 31-57 (906)
144 KOG0553 TPR repeat-containing 97.4 0.001 2.2E-08 66.2 9.9 94 670-768 89-185 (304)
145 cd00189 TPR Tetratricopeptide 97.4 0.0013 2.7E-08 55.6 9.6 92 701-794 3-96 (100)
146 PF09976 TPR_21: Tetratricopep 97.4 0.0032 7E-08 58.4 12.6 45 746-791 99-143 (145)
147 PLN03088 SGT1, suppressor of 97.4 0.002 4.4E-08 69.6 12.9 95 672-771 12-109 (356)
148 KOG0553 TPR repeat-containing 97.3 0.0015 3.2E-08 65.1 10.3 103 635-742 89-194 (304)
149 PRK15331 chaperone protein Sic 97.3 0.0031 6.8E-08 57.6 11.3 110 703-841 42-153 (165)
150 PF12895 Apc3: Anaphase-promot 97.3 0.00024 5.3E-09 58.7 3.9 77 712-791 3-83 (84)
151 KOG3081 Vesicle coat complex C 97.3 0.024 5.3E-07 55.5 17.6 84 606-690 147-235 (299)
152 KOG3060 Uncharacterized conser 97.3 0.019 4.2E-07 55.7 16.5 161 605-768 61-227 (289)
153 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0032 6.9E-08 56.1 11.0 98 668-767 8-111 (119)
154 PF09976 TPR_21: Tetratricopep 97.2 0.0075 1.6E-07 56.0 13.6 114 640-758 24-144 (145)
155 KOG3060 Uncharacterized conser 97.2 0.017 3.7E-07 56.1 15.6 158 630-793 55-218 (289)
156 PRK10153 DNA-binding transcrip 97.2 0.0069 1.5E-07 68.5 15.5 139 624-766 334-487 (517)
157 KOG2280 Vacuolar assembly/sort 97.2 0.42 9E-06 54.0 28.0 339 351-723 426-795 (829)
158 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0033 7.2E-08 56.0 10.4 95 699-795 3-105 (119)
159 PF13414 TPR_11: TPR repeat; P 97.2 0.00089 1.9E-08 52.9 5.8 64 729-794 2-66 (69)
160 KOG2041 WD40 repeat protein [G 97.1 0.47 1E-05 52.8 26.9 315 405-762 747-1087(1189)
161 PF13431 TPR_17: Tetratricopep 97.1 0.00033 7.2E-09 45.8 1.9 32 755-786 2-33 (34)
162 cd00189 TPR Tetratricopeptide 97.0 0.0055 1.2E-07 51.5 9.6 91 630-724 3-94 (100)
163 PRK02603 photosystem I assembl 97.0 0.013 2.8E-07 56.3 13.1 127 629-781 37-166 (172)
164 PRK02603 photosystem I assembl 97.0 0.0052 1.1E-07 59.0 10.0 81 699-781 36-121 (172)
165 PF14938 SNAP: Soluble NSF att 96.9 0.024 5.2E-07 59.3 15.5 131 600-743 98-248 (282)
166 PF13432 TPR_16: Tetratricopep 96.9 0.002 4.4E-08 50.0 5.6 56 737-794 4-59 (65)
167 CHL00033 ycf3 photosystem I as 96.9 0.0048 1E-07 59.0 9.4 93 698-792 35-139 (168)
168 PF04840 Vps16_C: Vps16, C-ter 96.9 0.74 1.6E-05 48.6 27.3 122 599-740 180-301 (319)
169 COG3898 Uncharacterized membra 96.9 0.28 6.1E-06 50.9 21.7 284 496-793 84-390 (531)
170 PLN03088 SGT1, suppressor of 96.9 0.0093 2E-07 64.6 12.4 104 634-742 9-115 (356)
171 PF04840 Vps16_C: Vps16, C-ter 96.9 0.37 8.1E-06 50.8 23.6 105 498-619 181-285 (319)
172 PF05843 Suf: Suppressor of fo 96.9 0.013 2.8E-07 61.1 12.6 134 629-767 3-142 (280)
173 KOG1914 mRNA cleavage and poly 96.8 1 2.2E-05 49.1 38.3 439 321-792 19-536 (656)
174 PF14559 TPR_19: Tetratricopep 96.7 0.0031 6.7E-08 49.6 5.4 49 746-794 5-53 (68)
175 PF08579 RPM2: Mitochondrial r 96.7 0.024 5.1E-07 47.9 10.4 79 530-608 29-116 (120)
176 PF08579 RPM2: Mitochondrial r 96.7 0.018 3.9E-07 48.6 9.6 80 325-404 28-116 (120)
177 CHL00033 ycf3 photosystem I as 96.7 0.022 4.8E-07 54.4 12.1 78 629-709 37-117 (168)
178 KOG0550 Molecular chaperone (D 96.7 0.016 3.5E-07 60.1 11.4 87 706-794 257-349 (486)
179 PF13281 DUF4071: Domain of un 96.7 0.13 2.9E-06 54.5 18.3 160 601-765 146-338 (374)
180 KOG1538 Uncharacterized conser 96.7 0.29 6.2E-06 53.9 20.7 97 602-730 709-806 (1081)
181 KOG2053 Mitochondrial inherita 96.7 2 4.3E-05 49.9 40.7 215 305-523 23-255 (932)
182 COG4235 Cytochrome c biogenesi 96.7 0.057 1.2E-06 54.5 14.6 102 696-797 153-258 (287)
183 COG3898 Uncharacterized membra 96.6 1.1 2.4E-05 46.8 27.5 245 507-760 133-391 (531)
184 PF13432 TPR_16: Tetratricopep 96.6 0.0062 1.3E-07 47.3 6.2 61 704-766 3-65 (65)
185 PRK15363 pathogenicity island 96.6 0.052 1.1E-06 49.6 12.7 88 631-723 39-128 (157)
186 PF10037 MRP-S27: Mitochondria 96.6 0.023 5E-07 61.6 12.3 118 455-572 62-184 (429)
187 PRK10153 DNA-binding transcrip 96.6 0.049 1.1E-06 61.7 15.4 132 658-795 333-482 (517)
188 PF13371 TPR_9: Tetratricopept 96.5 0.0067 1.4E-07 48.4 6.1 56 738-795 3-58 (73)
189 PF10037 MRP-S27: Mitochondria 96.5 0.038 8.2E-07 59.9 13.3 120 556-675 61-186 (429)
190 PF14938 SNAP: Soluble NSF att 96.5 0.11 2.4E-06 54.4 16.7 118 633-768 100-232 (282)
191 PF12688 TPR_5: Tetratrico pep 96.4 0.046 1E-06 48.1 10.9 91 633-723 7-100 (120)
192 PF06239 ECSIT: Evolutionarily 96.4 0.065 1.4E-06 51.3 12.4 117 559-690 45-167 (228)
193 KOG2041 WD40 repeat protein [G 96.4 2.4 5.2E-05 47.5 26.0 50 299-348 768-822 (1189)
194 PF12895 Apc3: Anaphase-promot 96.3 0.0074 1.6E-07 49.8 5.4 80 640-723 2-83 (84)
195 PRK10866 outer membrane biogen 96.3 0.27 5.9E-06 49.9 17.6 71 500-570 38-113 (243)
196 PF14559 TPR_19: Tetratricopep 96.3 0.005 1.1E-07 48.3 3.8 62 673-737 2-65 (68)
197 COG4700 Uncharacterized protei 96.2 0.39 8.4E-06 44.6 15.8 142 642-792 71-219 (251)
198 KOG1538 Uncharacterized conser 96.2 0.44 9.5E-06 52.5 18.9 243 230-549 584-827 (1081)
199 KOG1130 Predicted G-alpha GTPa 96.1 0.025 5.5E-07 58.5 8.8 128 664-793 197-342 (639)
200 PF05843 Suf: Suppressor of fo 96.1 0.075 1.6E-06 55.4 12.6 62 594-655 68-135 (280)
201 PF13414 TPR_11: TPR repeat; P 96.0 0.011 2.3E-07 46.6 4.5 63 699-763 4-69 (69)
202 PF07079 DUF1347: Protein of u 96.0 2.9 6.3E-05 44.7 38.3 453 241-735 16-530 (549)
203 COG4700 Uncharacterized protei 95.9 0.68 1.5E-05 43.0 15.8 113 601-718 94-213 (251)
204 PF12688 TPR_5: Tetratrico pep 95.8 0.1 2.3E-06 45.9 10.2 83 706-790 9-99 (120)
205 PRK10803 tol-pal system protei 95.8 0.054 1.2E-06 55.4 9.6 57 665-724 146-206 (263)
206 KOG2796 Uncharacterized conser 95.8 0.77 1.7E-05 45.2 16.5 138 527-666 178-323 (366)
207 PF06239 ECSIT: Evolutionarily 95.7 0.11 2.4E-06 49.8 10.6 87 525-611 46-153 (228)
208 PRK10803 tol-pal system protei 95.5 0.086 1.9E-06 53.9 10.0 91 630-722 146-241 (263)
209 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.051 1.1E-06 58.4 8.3 63 730-794 75-140 (453)
210 KOG0543 FKBP-type peptidyl-pro 95.4 0.16 3.4E-06 53.4 11.4 82 732-841 259-340 (397)
211 PRK10866 outer membrane biogen 95.3 1.3 2.8E-05 45.0 17.8 67 525-591 31-99 (243)
212 KOG2114 Vacuolar assembly/sort 95.3 7.7 0.00017 45.0 26.9 67 138-212 382-449 (933)
213 PF13428 TPR_14: Tetratricopep 95.3 0.025 5.4E-07 39.7 3.6 42 731-774 2-43 (44)
214 COG0457 NrfG FOG: TPR repeat [ 95.1 4 8.7E-05 40.7 24.7 193 596-794 59-264 (291)
215 PF12921 ATP13: Mitochondrial 95.1 0.26 5.6E-06 43.9 10.4 51 693-743 47-101 (126)
216 KOG2280 Vacuolar assembly/sort 95.0 8.5 0.00018 44.1 24.9 124 647-788 668-792 (829)
217 PF13371 TPR_9: Tetratricopept 94.8 0.079 1.7E-06 42.1 6.0 63 706-770 3-67 (73)
218 PF09205 DUF1955: Domain of un 94.8 1.9 4.1E-05 37.8 14.0 140 638-798 13-152 (161)
219 PF13525 YfiO: Outer membrane 94.7 1 2.2E-05 44.5 14.6 55 501-555 12-71 (203)
220 PF03704 BTAD: Bacterial trans 94.7 0.44 9.4E-06 44.2 11.4 106 672-793 16-123 (146)
221 KOG2796 Uncharacterized conser 94.5 0.95 2.1E-05 44.5 13.0 135 629-768 179-322 (366)
222 PF07079 DUF1347: Protein of u 94.4 8.8 0.00019 41.3 33.5 74 718-792 444-521 (549)
223 KOG2066 Vacuolar assembly/sort 94.3 13 0.00028 43.0 23.4 75 393-471 393-467 (846)
224 PF13424 TPR_12: Tetratricopep 94.3 0.11 2.5E-06 41.8 5.7 60 664-723 7-71 (78)
225 PF13525 YfiO: Outer membrane 94.1 1.9 4.2E-05 42.4 15.1 60 531-590 10-71 (203)
226 KOG1920 IkappaB kinase complex 94.0 7.2 0.00016 47.1 21.2 157 508-724 894-1052(1265)
227 COG0457 NrfG FOG: TPR repeat [ 94.0 7.1 0.00015 38.8 23.7 162 597-764 96-268 (291)
228 PRK11906 transcriptional regul 93.9 1.8 3.9E-05 47.0 15.2 141 643-789 274-430 (458)
229 PF12921 ATP13: Mitochondrial 93.9 0.32 7E-06 43.3 8.2 97 595-707 1-97 (126)
230 COG4235 Cytochrome c biogenesi 93.9 1.2 2.6E-05 45.3 13.0 102 661-767 155-262 (287)
231 KOG0550 Molecular chaperone (D 93.8 6.2 0.00013 41.9 18.1 146 637-787 259-435 (486)
232 PRK11906 transcriptional regul 93.6 0.7 1.5E-05 50.0 11.5 115 677-793 273-399 (458)
233 PF13424 TPR_12: Tetratricopep 93.5 0.11 2.3E-06 42.0 4.1 60 732-793 7-73 (78)
234 KOG4555 TPR repeat-containing 93.4 0.64 1.4E-05 40.4 8.6 88 707-796 52-145 (175)
235 PF03704 BTAD: Bacterial trans 93.4 0.39 8.4E-06 44.5 8.4 68 631-699 66-137 (146)
236 smart00299 CLH Clathrin heavy 93.3 2.2 4.8E-05 39.1 13.3 125 565-741 11-136 (140)
237 PF08631 SPO22: Meiosis protei 92.7 13 0.00029 38.6 19.5 61 601-661 126-191 (278)
238 PLN03098 LPA1 LOW PSII ACCUMUL 92.7 0.42 9.2E-06 51.6 8.2 60 662-724 75-138 (453)
239 KOG1258 mRNA processing protei 92.6 21 0.00046 40.1 30.3 183 595-784 296-493 (577)
240 KOG2610 Uncharacterized conser 92.5 3 6.4E-05 42.7 13.1 47 609-655 116-165 (491)
241 PF04097 Nic96: Nup93/Nic96; 92.3 28 0.00061 40.9 23.5 43 327-370 116-158 (613)
242 KOG1130 Predicted G-alpha GTPa 92.3 6.3 0.00014 41.6 15.6 52 432-484 26-80 (639)
243 PF04184 ST7: ST7 protein; In 92.3 7.6 0.00016 42.5 16.7 55 633-688 265-321 (539)
244 PF04053 Coatomer_WDAD: Coatom 92.2 1.9 4.1E-05 47.9 12.8 131 637-796 271-403 (443)
245 COG3118 Thioredoxin domain-con 92.1 3.1 6.7E-05 42.2 12.8 119 671-794 143-264 (304)
246 COG4105 ComL DNA uptake lipopr 92.1 5 0.00011 40.0 14.1 166 505-690 45-232 (254)
247 KOG3941 Intermediate in Toll s 91.7 0.66 1.4E-05 46.0 7.5 118 138-259 48-187 (406)
248 KOG0543 FKBP-type peptidyl-pro 91.7 1.3 2.8E-05 46.8 10.1 95 699-795 258-355 (397)
249 PF13512 TPR_18: Tetratricopep 91.7 1.9 4.1E-05 38.9 9.8 56 710-767 22-82 (142)
250 KOG3941 Intermediate in Toll s 91.4 1.7 3.6E-05 43.4 9.8 98 310-407 53-173 (406)
251 COG1729 Uncharacterized protei 91.4 1.2 2.6E-05 44.7 9.1 99 664-765 144-248 (262)
252 COG1729 Uncharacterized protei 91.2 1.6 3.4E-05 43.9 9.7 92 630-724 145-241 (262)
253 KOG2610 Uncharacterized conser 91.0 1.6 3.5E-05 44.5 9.6 159 639-802 115-283 (491)
254 PF13281 DUF4071: Domain of un 90.9 15 0.00034 39.3 17.3 73 499-571 146-227 (374)
255 PF04053 Coatomer_WDAD: Coatom 90.9 2.4 5.2E-05 47.1 11.9 130 234-417 298-427 (443)
256 KOG2114 Vacuolar assembly/sort 90.7 40 0.00086 39.5 30.6 74 705-781 712-786 (933)
257 smart00299 CLH Clathrin heavy 90.4 10 0.00022 34.6 14.1 33 372-405 22-54 (140)
258 PRK09687 putative lyase; Provi 90.4 25 0.00054 36.6 24.4 234 493-740 36-277 (280)
259 KOG1920 IkappaB kinase complex 90.2 53 0.0011 40.2 23.2 119 600-729 912-1030(1265)
260 PF00515 TPR_1: Tetratricopept 90.0 0.5 1.1E-05 30.6 3.6 32 731-764 2-33 (34)
261 PF10300 DUF3808: Protein of u 90.0 5.5 0.00012 45.0 14.1 49 746-794 319-375 (468)
262 PF07719 TPR_2: Tetratricopept 89.9 0.69 1.5E-05 29.8 4.3 32 732-765 3-34 (34)
263 COG5107 RNA14 Pre-mRNA 3'-end 89.9 32 0.00069 37.2 33.6 133 121-260 40-190 (660)
264 PF09613 HrpB1_HrpK: Bacterial 89.7 9.2 0.0002 35.3 12.5 90 670-764 18-109 (160)
265 PRK15331 chaperone protein Sic 89.6 5 0.00011 37.2 10.8 83 639-724 49-131 (165)
266 PF13512 TPR_18: Tetratricopep 89.5 5.2 0.00011 36.1 10.6 53 638-690 21-75 (142)
267 KOG1585 Protein required for f 88.8 18 0.00039 35.7 14.2 86 700-788 152-249 (308)
268 KOG1941 Acetylcholine receptor 88.8 3.6 7.7E-05 42.7 10.1 48 536-583 16-65 (518)
269 PF02259 FAT: FAT domain; Int 88.7 39 0.00084 36.6 20.0 151 625-778 144-304 (352)
270 PF10300 DUF3808: Protein of u 88.5 2.5 5.4E-05 47.7 10.0 128 667-795 193-334 (468)
271 PF13428 TPR_14: Tetratricopep 88.1 1.1 2.4E-05 31.2 4.5 29 766-794 1-29 (44)
272 COG4105 ComL DNA uptake lipopr 88.1 31 0.00066 34.6 15.8 63 636-698 43-107 (254)
273 KOG2066 Vacuolar assembly/sort 88.0 59 0.0013 37.9 22.6 103 237-369 362-467 (846)
274 PF13170 DUF4003: Protein of u 88.0 10 0.00022 39.7 13.3 64 643-707 159-226 (297)
275 COG4785 NlpI Lipoprotein NlpI, 88.0 13 0.00027 36.0 12.3 29 766-794 237-265 (297)
276 PF04184 ST7: ST7 protein; In 87.9 7.3 0.00016 42.6 12.2 150 638-801 179-330 (539)
277 COG3629 DnrI DNA-binding trans 87.4 3.8 8.3E-05 41.9 9.5 75 495-569 154-235 (280)
278 PF13170 DUF4003: Protein of u 87.4 8.8 0.00019 40.2 12.4 129 441-602 79-223 (297)
279 PF10345 Cohesin_load: Cohesin 87.1 71 0.0015 37.7 31.9 48 746-793 548-604 (608)
280 KOG1941 Acetylcholine receptor 86.9 44 0.00095 35.1 17.3 95 629-723 164-271 (518)
281 KOG4234 TPR repeat-containing 86.8 3.2 7E-05 39.2 7.7 87 707-795 104-197 (271)
282 PF13176 TPR_7: Tetratricopept 86.5 1.2 2.6E-05 29.4 3.7 26 768-793 1-26 (36)
283 PF08631 SPO22: Meiosis protei 86.4 45 0.00097 34.7 25.5 63 499-561 126-192 (278)
284 KOG4279 Serine/threonine prote 86.3 21 0.00046 40.8 14.9 101 637-766 297-400 (1226)
285 KOG4648 Uncharacterized conser 85.9 4.1 8.8E-05 41.8 8.5 21 746-766 179-199 (536)
286 KOG1258 mRNA processing protei 85.8 68 0.0015 36.3 28.0 123 493-616 296-420 (577)
287 KOG4555 TPR repeat-containing 85.5 4.6 0.0001 35.3 7.5 88 671-763 52-146 (175)
288 PRK09687 putative lyase; Provi 85.5 49 0.0011 34.4 22.8 128 122-257 36-167 (280)
289 PF10345 Cohesin_load: Cohesin 84.4 94 0.002 36.7 28.5 91 168-259 152-253 (608)
290 COG3118 Thioredoxin domain-con 84.3 53 0.0012 33.7 15.8 116 571-690 144-264 (304)
291 PF04097 Nic96: Nup93/Nic96; 83.3 1E+02 0.0022 36.3 21.9 85 534-623 266-354 (613)
292 COG5107 RNA14 Pre-mRNA 3'-end 83.3 73 0.0016 34.6 30.9 136 627-768 397-538 (660)
293 COG3629 DnrI DNA-binding trans 82.7 4.5 9.9E-05 41.3 7.5 76 596-671 153-236 (280)
294 PF07035 Mic1: Colon cancer-as 82.5 34 0.00075 32.1 12.6 138 215-387 13-150 (167)
295 COG4785 NlpI Lipoprotein NlpI, 82.4 7.2 0.00016 37.5 8.1 100 672-780 75-178 (297)
296 PF13176 TPR_7: Tetratricopept 82.0 1.9 4E-05 28.5 3.1 24 630-653 2-25 (36)
297 PF00637 Clathrin: Region in C 81.9 0.1 2.2E-06 48.3 -4.3 82 364-449 14-95 (143)
298 PF09613 HrpB1_HrpK: Bacterial 81.6 7.5 0.00016 35.9 7.7 50 746-795 24-73 (160)
299 PF09205 DUF1955: Domain of un 81.5 38 0.00082 30.1 13.1 60 532-592 92-151 (161)
300 KOG1464 COP9 signalosome, subu 80.9 38 0.00083 33.8 12.6 167 285-452 20-219 (440)
301 KOG1464 COP9 signalosome, subu 80.2 68 0.0015 32.2 16.9 258 507-772 40-343 (440)
302 KOG0276 Vesicle coat complex C 79.3 24 0.00053 39.5 11.8 148 607-790 597-745 (794)
303 PF13181 TPR_8: Tetratricopept 79.2 2.9 6.3E-05 26.9 3.3 30 732-763 3-32 (34)
304 TIGR02561 HrpB1_HrpK type III 78.3 11 0.00023 34.3 7.4 51 746-796 24-74 (153)
305 TIGR02561 HrpB1_HrpK type III 78.2 43 0.00092 30.6 11.1 84 673-761 21-106 (153)
306 PF00515 TPR_1: Tetratricopept 77.7 2.8 6.1E-05 27.0 2.9 27 629-655 3-29 (34)
307 TIGR02508 type_III_yscG type I 77.6 25 0.00053 29.4 8.5 61 604-667 47-107 (115)
308 COG4649 Uncharacterized protei 77.5 63 0.0014 30.3 12.1 120 301-420 68-195 (221)
309 PF00637 Clathrin: Region in C 76.6 2.5 5.4E-05 38.9 3.3 54 567-620 13-66 (143)
310 PF13431 TPR_17: Tetratricopep 75.8 2.1 4.5E-05 27.9 1.7 23 696-718 10-33 (34)
311 PF10602 RPN7: 26S proteasome 75.6 18 0.00039 34.6 8.9 57 633-689 42-100 (177)
312 PF02259 FAT: FAT domain; Int 75.4 81 0.0018 34.0 15.4 66 728-795 144-213 (352)
313 PF07721 TPR_4: Tetratricopept 75.1 4.5 9.8E-05 24.3 3.0 24 767-790 2-25 (26)
314 PF07035 Mic1: Colon cancer-as 75.0 75 0.0016 29.9 14.9 34 381-414 18-51 (167)
315 COG2976 Uncharacterized protei 74.7 63 0.0014 31.0 11.7 88 671-765 98-192 (207)
316 PF14853 Fis1_TPR_C: Fis1 C-te 74.6 7.7 0.00017 28.3 4.6 30 736-767 7-36 (53)
317 PF07719 TPR_2: Tetratricopept 74.2 4.5 9.8E-05 25.8 3.2 28 767-794 2-29 (34)
318 COG3947 Response regulator con 73.6 1.1E+02 0.0024 31.3 14.8 59 733-793 282-340 (361)
319 PF13374 TPR_10: Tetratricopep 72.4 6.1 0.00013 26.7 3.7 28 767-794 3-30 (42)
320 PRK10941 hypothetical protein; 72.1 21 0.00047 36.6 8.9 60 733-794 184-243 (269)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 71.9 19 0.00041 29.9 6.6 60 338-399 23-83 (103)
322 PRK12798 chemotaxis protein; R 71.8 1.6E+02 0.0034 32.1 20.5 205 609-842 125-347 (421)
323 KOG4570 Uncharacterized conser 71.1 26 0.00056 36.0 8.8 99 488-590 58-164 (418)
324 PF10602 RPN7: 26S proteasome 70.1 38 0.00082 32.4 9.7 26 497-522 39-64 (177)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 70.1 23 0.0005 29.4 6.7 60 645-706 25-84 (103)
326 KOG1585 Protein required for f 70.0 1.2E+02 0.0027 30.2 16.8 145 597-756 92-251 (308)
327 KOG0276 Vesicle coat complex C 69.9 27 0.00059 39.1 9.4 102 299-417 645-746 (794)
328 PRK15180 Vi polysaccharide bio 69.3 26 0.00056 38.0 8.8 120 640-765 302-424 (831)
329 KOG4648 Uncharacterized conser 69.2 14 0.0003 38.1 6.6 85 706-792 105-191 (536)
330 PF14853 Fis1_TPR_C: Fis1 C-te 68.7 30 0.00064 25.3 6.5 50 769-844 4-53 (53)
331 KOG2063 Vacuolar assembly/sort 68.3 1.4E+02 0.003 36.3 15.3 128 233-368 506-637 (877)
332 KOG4234 TPR repeat-containing 67.7 1E+02 0.0022 29.7 11.3 25 739-765 177-201 (271)
333 PF13762 MNE1: Mitochondrial s 67.5 63 0.0014 29.5 9.8 51 320-370 77-128 (145)
334 PF02284 COX5A: Cytochrome c o 67.4 24 0.00052 29.7 6.4 59 646-706 29-87 (108)
335 KOG4570 Uncharacterized conser 67.2 39 0.00084 34.8 9.1 100 591-690 59-163 (418)
336 PF13181 TPR_8: Tetratricopept 66.2 11 0.00025 23.9 3.8 28 767-794 2-29 (34)
337 PF13374 TPR_10: Tetratricopep 65.4 8 0.00017 26.0 3.1 27 629-655 4-30 (42)
338 PF02284 COX5A: Cytochrome c o 64.2 58 0.0013 27.5 8.0 48 723-772 38-85 (108)
339 PRK15180 Vi polysaccharide bio 64.2 47 0.001 36.1 9.5 139 674-819 301-442 (831)
340 TIGR02508 type_III_yscG type I 64.1 41 0.0009 28.1 7.1 62 132-201 48-109 (115)
341 PF13174 TPR_6: Tetratricopept 63.8 7.6 0.00016 24.5 2.5 28 768-795 2-29 (33)
342 PF10579 Rapsyn_N: Rapsyn N-te 62.9 11 0.00024 29.9 3.5 47 674-720 18-65 (80)
343 PF06552 TOM20_plant: Plant sp 61.8 48 0.001 31.4 8.1 127 643-800 7-141 (186)
344 PF11207 DUF2989: Protein of u 61.6 43 0.00093 32.4 8.0 74 644-718 123-198 (203)
345 KOG1498 26S proteasome regulat 60.8 2E+02 0.0044 30.9 13.1 114 703-818 136-264 (439)
346 PF13762 MNE1: Mitochondrial s 59.7 40 0.00086 30.8 7.0 89 11-99 28-128 (145)
347 PF11207 DUF2989: Protein of u 58.9 41 0.00088 32.5 7.3 76 708-786 117-198 (203)
348 PF06552 TOM20_plant: Plant sp 58.8 40 0.00086 31.9 7.0 49 628-676 29-83 (186)
349 KOG0890 Protein kinase of the 57.2 6.6E+02 0.014 34.2 30.1 278 497-795 1423-1731(2382)
350 KOG0292 Vesicle coat complex C 57.0 15 0.00032 43.0 4.7 97 668-790 626-722 (1202)
351 smart00028 TPR Tetratricopepti 56.8 17 0.00037 21.9 3.4 22 769-790 4-25 (34)
352 PHA02875 ankyrin repeat protei 56.0 3.2E+02 0.007 30.3 18.0 40 217-256 116-157 (413)
353 PF09477 Type_III_YscG: Bacter 55.6 89 0.0019 26.7 7.7 87 576-666 21-107 (116)
354 COG5159 RPN6 26S proteasome re 55.4 2.5E+02 0.0054 28.7 12.8 50 634-683 10-66 (421)
355 COG4649 Uncharacterized protei 54.8 1.9E+02 0.0041 27.3 15.0 121 637-760 68-195 (221)
356 KOG1550 Extracellular protein 54.5 1.8E+02 0.004 33.8 13.4 112 578-690 229-356 (552)
357 COG4455 ImpE Protein of avirul 54.4 2.2E+02 0.0048 28.0 13.0 127 630-768 4-141 (273)
358 PF11768 DUF3312: Protein of u 54.4 1.4E+02 0.0031 33.7 11.5 56 601-656 413-473 (545)
359 KOG2758 Translation initiation 53.9 2.8E+02 0.0061 28.9 12.7 163 583-761 22-196 (432)
360 KOG1308 Hsp70-interacting prot 52.8 9.4 0.0002 39.6 2.2 90 711-802 127-218 (377)
361 PF10366 Vps39_1: Vacuolar sor 52.7 64 0.0014 27.8 7.0 27 233-259 41-67 (108)
362 PF13929 mRNA_stabil: mRNA sta 52.7 2.8E+02 0.0062 28.6 13.8 60 489-548 197-260 (292)
363 COG5159 RPN6 26S proteasome re 52.6 1.1E+02 0.0023 31.2 9.1 32 329-360 10-41 (421)
364 PF04190 DUF410: Protein of un 52.4 2.8E+02 0.0061 28.5 17.0 82 595-691 89-170 (260)
365 PF09986 DUF2225: Uncharacteri 52.3 77 0.0017 31.4 8.5 64 730-795 118-194 (214)
366 PF13934 ELYS: Nuclear pore co 51.9 1.9E+02 0.004 29.0 11.2 34 710-743 152-185 (226)
367 PHA02875 ankyrin repeat protei 51.2 3.8E+02 0.0082 29.7 16.3 197 7-231 17-230 (413)
368 PF09670 Cas_Cas02710: CRISPR- 50.9 1.3E+02 0.0029 32.8 10.9 51 639-690 143-197 (379)
369 KOG0376 Serine-threonine phosp 50.7 26 0.00056 38.4 5.1 84 708-793 14-99 (476)
370 PF14561 TPR_20: Tetratricopep 50.2 32 0.00069 28.5 4.6 44 752-795 8-51 (90)
371 KOG3364 Membrane protein invol 49.6 1.5E+02 0.0032 26.7 8.5 26 737-764 78-103 (149)
372 KOG0991 Replication factor C, 49.2 1.6E+02 0.0035 29.1 9.6 150 25-206 135-284 (333)
373 COG4455 ImpE Protein of avirul 48.5 57 0.0012 31.8 6.4 66 701-768 4-71 (273)
374 KOG0545 Aryl-hydrocarbon recep 47.8 2.2E+02 0.0048 28.5 10.2 49 746-794 244-292 (329)
375 PF10579 Rapsyn_N: Rapsyn N-te 47.3 54 0.0012 26.2 5.0 47 639-685 18-66 (80)
376 KOG1550 Extracellular protein 46.7 5.3E+02 0.011 30.0 19.4 116 475-591 228-358 (552)
377 PF13174 TPR_6: Tetratricopept 46.1 32 0.0007 21.4 3.3 27 736-764 6-32 (33)
378 KOG1586 Protein required for f 45.7 3.2E+02 0.007 27.3 17.0 30 746-775 209-240 (288)
379 TIGR03504 FimV_Cterm FimV C-te 45.6 38 0.00083 23.6 3.6 26 770-795 3-28 (44)
380 KOG4507 Uncharacterized conser 44.6 75 0.0016 35.7 7.4 73 701-775 645-719 (886)
381 PF07163 Pex26: Pex26 protein; 44.4 1.9E+02 0.0042 29.6 9.6 88 634-724 90-184 (309)
382 PRK13342 recombination factor 43.9 4.6E+02 0.01 29.1 14.1 48 629-676 229-279 (413)
383 PRK13800 putative oxidoreducta 43.5 7.5E+02 0.016 30.9 23.6 19 491-509 632-650 (897)
384 KOG4642 Chaperone-dependent E3 41.0 2.4E+02 0.0053 28.2 9.4 81 606-688 20-104 (284)
385 PF10366 Vps39_1: Vacuolar sor 40.7 1.5E+02 0.0032 25.6 7.4 27 629-655 41-67 (108)
386 PF11663 Toxin_YhaV: Toxin wit 40.1 31 0.00067 30.7 3.1 35 636-672 104-138 (140)
387 COG3947 Response regulator con 38.5 4.7E+02 0.01 27.1 13.5 55 499-553 284-340 (361)
388 PF13934 ELYS: Nuclear pore co 38.4 4.2E+02 0.0091 26.5 12.0 113 608-733 90-207 (226)
389 PRK13800 putative oxidoreducta 38.2 8.9E+02 0.019 30.3 23.8 255 412-690 624-880 (897)
390 smart00386 HAT HAT (Half-A-TPR 38.1 51 0.0011 20.3 3.4 29 746-774 1-29 (33)
391 TIGR03504 FimV_Cterm FimV C-te 37.3 68 0.0015 22.4 3.8 22 533-554 6-27 (44)
392 PF11525 CopK: Copper resistan 37.3 11 0.00024 28.6 -0.0 21 910-930 8-28 (73)
393 KOG3364 Membrane protein invol 36.8 1.7E+02 0.0036 26.4 6.9 69 659-729 29-103 (149)
394 KOG2063 Vacuolar assembly/sort 36.6 8.9E+02 0.019 29.7 20.0 130 528-674 506-638 (877)
395 KOG4077 Cytochrome c oxidase, 36.3 1.6E+02 0.0036 25.9 6.7 58 646-705 68-125 (149)
396 KOG4642 Chaperone-dependent E3 35.4 92 0.002 30.9 5.7 83 672-758 20-104 (284)
397 PF07720 TPR_3: Tetratricopept 35.2 78 0.0017 20.9 3.7 31 733-765 4-36 (36)
398 KOG2297 Predicted translation 33.4 4.9E+02 0.011 27.0 10.5 50 513-573 186-235 (412)
399 PF04910 Tcf25: Transcriptiona 33.3 6.6E+02 0.014 27.3 17.9 90 669-764 110-225 (360)
400 KOG3824 Huntingtin interacting 32.9 48 0.001 33.9 3.6 59 710-770 128-188 (472)
401 KOG0687 26S proteasome regulat 32.5 5.4E+02 0.012 27.1 10.7 123 641-783 36-178 (393)
402 PF11848 DUF3368: Domain of un 32.4 84 0.0018 22.4 3.8 35 61-95 12-46 (48)
403 PF14427 Pput2613-deam: Pput_2 32.2 1.1E+02 0.0023 26.1 4.8 57 862-918 45-102 (118)
404 PF15469 Sec5: Exocyst complex 31.1 3.6E+02 0.0078 25.8 9.4 25 667-691 91-115 (182)
405 PF14669 Asp_Glu_race_2: Putat 30.4 5.1E+02 0.011 25.0 14.8 95 414-519 98-206 (233)
406 PF11848 DUF3368: Domain of un 30.1 1.5E+02 0.0032 21.1 4.7 33 333-365 13-45 (48)
407 PF15161 Neuropep_like: Neurop 29.8 23 0.00049 25.5 0.5 18 889-907 11-28 (65)
408 KOG3807 Predicted membrane pro 29.5 2.6E+02 0.0056 29.2 8.0 167 572-772 227-402 (556)
409 cd08819 CARD_MDA5_2 Caspase ac 29.1 2.2E+02 0.0047 23.4 5.9 38 608-646 48-85 (88)
410 cd08819 CARD_MDA5_2 Caspase ac 28.9 3.3E+02 0.0071 22.4 7.3 39 303-342 48-86 (88)
411 PF11838 ERAP1_C: ERAP1-like C 28.8 7.1E+02 0.015 26.2 17.6 82 575-656 144-230 (324)
412 COG2178 Predicted RNA-binding 28.7 4.1E+02 0.0089 25.7 8.6 50 607-656 40-98 (204)
413 KOG0376 Serine-threonine phosp 28.7 1.5E+02 0.0033 32.7 6.7 101 638-743 15-118 (476)
414 PF11846 DUF3366: Domain of un 28.6 1.3E+02 0.0027 29.2 5.8 28 696-723 142-169 (193)
415 KOG0551 Hsp90 co-chaperone CNS 28.6 1.6E+02 0.0034 30.9 6.3 90 700-791 83-178 (390)
416 PRK10564 maltose regulon perip 28.6 72 0.0016 33.0 4.0 41 629-669 259-299 (303)
417 PF04190 DUF410: Protein of un 28.6 6.6E+02 0.014 25.8 16.4 107 303-421 2-119 (260)
418 COG1747 Uncharacterized N-term 28.5 9E+02 0.019 27.3 19.2 14 865-878 429-442 (711)
419 PF09477 Type_III_YscG: Bacter 28.3 2.5E+02 0.0054 24.1 6.3 63 130-200 47-109 (116)
420 KOG0292 Vesicle coat complex C 28.2 5.5E+02 0.012 31.0 11.0 171 243-453 605-782 (1202)
421 KOG0686 COP9 signalosome, subu 28.1 8.2E+02 0.018 26.7 12.0 58 598-655 152-215 (466)
422 KOG4521 Nuclear pore complex, 28.0 1.1E+03 0.024 29.6 13.7 19 605-623 929-947 (1480)
423 KOG2659 LisH motif-containing 28.0 3.3E+02 0.0071 27.1 8.1 54 669-723 71-128 (228)
424 COG0790 FOG: TPR repeat, SEL1 27.9 7E+02 0.015 25.9 17.4 53 508-560 91-147 (292)
425 PF07163 Pex26: Pex26 protein; 27.9 3.8E+02 0.0083 27.5 8.7 88 328-415 89-181 (309)
426 PF13929 mRNA_stabil: mRNA sta 27.8 7.1E+02 0.015 25.9 19.8 50 390-439 200-254 (292)
427 PRK10941 hypothetical protein; 26.8 3.6E+02 0.0077 27.9 8.8 74 667-743 186-264 (269)
428 PF11663 Toxin_YhaV: Toxin wit 26.5 80 0.0017 28.2 3.4 31 64-96 108-138 (140)
429 PF08225 Antimicrobial19: Pseu 26.3 40 0.00086 18.8 1.0 12 895-906 10-21 (23)
430 COG5108 RPO41 Mitochondrial DN 26.2 5.2E+02 0.011 29.9 10.2 47 464-510 33-81 (1117)
431 COG4976 Predicted methyltransf 26.1 89 0.0019 30.8 3.9 60 704-765 1-62 (287)
432 PF08311 Mad3_BUB1_I: Mad3/BUB 25.9 4.1E+02 0.0088 23.6 8.0 42 645-686 81-123 (126)
433 COG2178 Predicted RNA-binding 25.9 4.2E+02 0.0092 25.6 8.1 18 776-793 131-148 (204)
434 PF11846 DUF3366: Domain of un 25.5 1.6E+02 0.0035 28.5 6.0 37 725-763 139-175 (193)
435 PRK09169 hypothetical protein; 25.2 2E+03 0.042 30.2 47.3 503 231-756 122-732 (2316)
436 COG5108 RPO41 Mitochondrial DN 25.1 4.5E+02 0.0098 30.4 9.5 32 455-486 99-130 (1117)
437 PF14689 SPOB_a: Sensor_kinase 25.1 1.3E+02 0.0027 22.9 3.9 30 661-690 22-51 (62)
438 PRK10564 maltose regulon perip 25.0 1E+02 0.0023 31.9 4.4 40 324-363 259-298 (303)
439 cd00280 TRFH Telomeric Repeat 24.8 4.2E+02 0.0091 25.4 7.8 36 499-534 116-151 (200)
440 KOG1586 Protein required for f 24.8 7.2E+02 0.016 25.0 18.0 16 640-655 167-182 (288)
441 KOG4279 Serine/threonine prote 24.3 7.3E+02 0.016 29.3 10.9 96 536-656 297-395 (1226)
442 cd08326 CARD_CASP9 Caspase act 24.2 2E+02 0.0043 23.5 5.1 42 300-341 39-80 (84)
443 PF10475 DUF2450: Protein of u 24.1 4.7E+02 0.01 27.4 9.4 52 500-554 104-155 (291)
444 COG1747 Uncharacterized N-term 24.0 1.1E+03 0.023 26.7 23.1 159 525-690 65-233 (711)
445 PF06957 COPI_C: Coatomer (COP 23.4 3E+02 0.0064 30.4 7.7 39 725-765 293-333 (422)
446 PF14669 Asp_Glu_race_2: Putat 23.3 6.8E+02 0.015 24.2 15.2 97 515-622 97-207 (233)
447 COG2912 Uncharacterized conser 23.2 4.2E+02 0.009 27.2 8.2 57 734-792 185-241 (269)
448 PF12862 Apc5: Anaphase-promot 23.2 2.1E+02 0.0045 23.8 5.3 49 746-794 12-69 (94)
449 TIGR02710 CRISPR-associated pr 23.1 7.6E+02 0.016 26.9 10.6 27 636-662 139-165 (380)
450 PF10475 DUF2450: Protein of u 23.1 5.3E+02 0.011 27.0 9.6 53 296-350 103-155 (291)
451 PF14689 SPOB_a: Sensor_kinase 23.1 1.2E+02 0.0026 23.0 3.5 24 632-655 28-51 (62)
452 PF12069 DUF3549: Protein of u 22.7 9.6E+02 0.021 25.6 11.6 93 398-493 172-264 (340)
453 PF12926 MOZART2: Mitotic-spin 22.6 4.4E+02 0.0095 21.7 6.9 42 582-623 29-70 (88)
454 PF12926 MOZART2: Mitotic-spin 22.6 2.4E+02 0.0052 23.1 5.1 45 215-259 27-71 (88)
455 PF02847 MA3: MA3 domain; Int 22.5 2.9E+02 0.0063 23.7 6.5 23 498-520 6-28 (113)
456 KOG2908 26S proteasome regulat 21.9 4.2E+02 0.0091 28.0 7.9 76 495-570 76-164 (380)
457 cd08326 CARD_CASP9 Caspase act 21.9 2.1E+02 0.0045 23.4 4.8 61 5-69 19-79 (84)
458 PF04090 RNA_pol_I_TF: RNA pol 21.8 7.6E+02 0.016 24.1 9.7 25 631-655 45-69 (199)
459 TIGR02414 pepN_proteo aminopep 21.6 1.4E+03 0.03 28.4 13.8 122 665-787 707-835 (863)
460 TIGR02710 CRISPR-associated pr 21.4 1.1E+03 0.023 25.8 11.3 20 605-624 139-158 (380)
461 PRK11619 lytic murein transgly 21.3 1.4E+03 0.031 27.1 41.4 95 705-801 414-511 (644)
462 PHA02874 ankyrin repeat protei 21.1 1.1E+03 0.025 26.1 12.6 17 132-149 7-23 (434)
463 COG2976 Uncharacterized protei 21.0 7.8E+02 0.017 24.0 16.1 56 602-657 132-189 (207)
464 KOG3824 Huntingtin interacting 21.0 1.7E+02 0.0037 30.1 4.9 46 746-791 130-175 (472)
465 PF07575 Nucleopor_Nup85: Nup8 20.7 1.4E+03 0.03 26.7 20.2 63 525-589 371-433 (566)
466 PRK14015 pepN aminopeptidase N 20.4 1.6E+03 0.034 28.0 13.9 123 665-788 717-846 (875)
467 PRK13342 recombination factor 20.3 1.2E+03 0.026 25.8 17.4 49 527-575 228-279 (413)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.3e-149 Score=1350.55 Aligned_cols=809 Identities=35% Similarity=0.625 Sum_probs=794.7
Q ss_pred CCChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcccHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhH
Q 046194 48 DRNSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSN 127 (934)
Q Consensus 48 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (934)
.++..++|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++++|... +.+..|.++|..+.+.|..+++.++|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWK--RAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhC--CCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 4678889999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcC
Q 046194 128 VLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSS 207 (934)
Q Consensus 128 ~li~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~ 207 (934)
+|+++|+++ |+++.|+++|++|++||+++||+||++|++.|++++|+++|++|+..|+ .||.+||+++|++|+..
T Consensus 126 ~li~~~~~~-g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~----~Pd~~t~~~ll~~~~~~ 200 (857)
T PLN03077 126 AMLSMFVRF-GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV----RPDVYTFPCVLRTCGGI 200 (857)
T ss_pred HHHHHHHhC-CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCChhHHHHHHHHhCCc
Confidence 999999999 9999999999999999999999999999999999999999999999999 99999999999999988
Q ss_pred ccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcC
Q 046194 208 VLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGL 287 (934)
Q Consensus 208 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 287 (934)
+++.. ++++|+.+++.|+
T Consensus 201 ~~~~~--------------------------------------------------------------~~~~~~~~~~~g~ 218 (857)
T PLN03077 201 PDLAR--------------------------------------------------------------GREVHAHVVRFGF 218 (857)
T ss_pred cchhh--------------------------------------------------------------HHHHHHHHHHcCC
Confidence 87765 7888888889999
Q ss_pred CCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 046194 288 FDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSC 367 (934)
Q Consensus 288 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 367 (934)
.||+.++|+||++|+++|++++|.++|++|+.+|+++||+||.+|+++|++++|+++|.+|.+.|+.||..||+.++.+|
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHH
Q 046194 368 ASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYY 447 (934)
Q Consensus 368 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~ 447 (934)
++.|+++.|+++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|.++||+||.+|++.|+. ++|+++|
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~-~~A~~lf 377 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP-DKALETY 377 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc
Q 046194 448 LDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEV 527 (934)
Q Consensus 448 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~ 527 (934)
++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++ |.+
T Consensus 378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~v 456 (857)
T PLN03077 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVI 456 (857)
T ss_pred HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-Cee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 046194 528 SWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYS 607 (934)
Q Consensus 528 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 607 (934)
+||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+.|+.+|..++|+||++|+
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 999999999999999999999999986 5999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHH
Q 046194 608 KCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKS 687 (934)
Q Consensus 608 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 687 (934)
|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|+.
T Consensus 536 k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 999999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 688 MSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 688 m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
|.+++|+.|+..||++|+++|+|+|++++|.+++++|+++||..+|++|+.+|+.+ |+.+.|+.+++++++++|+++.
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~--~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH--RHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCCCcc
Confidence 99778999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHHCCcccC
Q 046194 768 NYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQ 847 (934)
Q Consensus 768 ~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~~~ 847 (934)
.|+.|+|+|++.|+|++|.++++.|+++|++|+||+|||++++++|.|.+||.+||+.++|+.+|++|.++|++.||+||
T Consensus 693 ~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~ 772 (857)
T PLN03077 693 YYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGS 772 (857)
T ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCchhhhhhhhcccHHHHHHHHhc-CCCCCcEEEEccccccCchhhHHHhHhhhhCcEEEEecCCcccccCCc
Q 046194 848 TKFALFDLEPESKEDLVSYHSEKIAVAFVLT-RNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDG 926 (934)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~n~~~~~~ch~~~~~~s~~~~~~~~~~d~~~~h~f~~g 926 (934)
+.+++ ++++++||..|++||||||+||||| +|||+||||+||||||+|||+++||||++++|||||||++|||||+||
T Consensus 773 ~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g 851 (857)
T PLN03077 773 ESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDG 851 (857)
T ss_pred cchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCC
Confidence 99888 5578899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 046194 927 KCSCGD 932 (934)
Q Consensus 927 ~csc~~ 932 (934)
+|||+|
T Consensus 852 ~csc~d 857 (857)
T PLN03077 852 ECSCGD 857 (857)
T ss_pred cccCCC
Confidence 999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-120 Score=1077.42 Aligned_cols=612 Identities=35% Similarity=0.649 Sum_probs=604.7
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHH
Q 046194 319 GKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDG-LMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNA 397 (934)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 397 (934)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3477899999999999999999999999998865 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchH
Q 046194 398 LLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKL 477 (934)
Q Consensus 398 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 477 (934)
|+++|+++|+++.|.++|++|++||.++||++|.+|++.|+. ++|+++|++|.+.|+.|+..||+.++.+|+..|+.+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~-~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNY-REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCH-HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046194 478 GHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ 557 (934)
Q Consensus 478 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 557 (934)
+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|..+ |+++||+||.+|++.|++++|+++|++|...|+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHH
Q 046194 558 RLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGY 637 (934)
Q Consensus 558 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 637 (934)
.||..||++++.+|++.|.++.|.++|+.+.+.|+.||..++|+||++|+|+|++++|.++|++|.+||+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKI 717 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 717 (934)
+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 718 EEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 718 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
.+++++|+..|+..+|++|+.+|+.+ |+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~--g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIH--KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHc--CCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHHCCcccCCCcccccCCchhhhhhhhcccHHHHHHHHh
Q 046194 798 KKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYHSEKIAVAFVL 877 (934)
Q Consensus 798 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (934)
+|.||+||+++.+.+|.|.+||.+||+.++|++++.+|..+|++.||.||+.++++++++++|+..|++||||||+||||
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l 639 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGL 639 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCCCcEEEEccccccCchhhHHHhHhhhhCcEEEEecCCcccccCCcccCCCCCC
Q 046194 878 T-RNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDGKCSCGDYW 934 (934)
Q Consensus 878 ~-~~~~~~~~~~~n~~~~~~ch~~~~~~s~~~~~~~~~~d~~~~h~f~~g~csc~~~~ 934 (934)
| +|||.||||+||||||+|||+|+||||+++||||||||++|||||+||+|||+|||
T Consensus 640 ~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 640 INTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9 99999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-90 Score=841.05 Aligned_cols=622 Identities=29% Similarity=0.490 Sum_probs=596.8
Q ss_pred chhhHHHHHHHHhcCCCCchhhhHHHHHHhhcCChhhHHHhhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHHHHcC
Q 046194 2 KDAKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMSNEACKMFKEMVRAG 81 (934)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 81 (934)
..|.++|.++.+.|..+++.++|.||.+|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|
T Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g 182 (857)
T PLN03077 103 EEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182 (857)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCCCCcccHHHH
Q 046194 82 FLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSI 161 (934)
Q Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~l 161 (934)
+.||.+||+.+|++|+.. +++..++++|..+.+.|+.+|++++|+||.+|+++ |+++.|+++|++|++||+++||+|
T Consensus 183 ~~Pd~~t~~~ll~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~-g~~~~A~~lf~~m~~~d~~s~n~l 259 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGI--PDLARGREVHAHVVRFGFELDVDVVNALITMYVKC-GDVVSARLVFDRMPRRDCISWNAM 259 (857)
T ss_pred CCCChhHHHHHHHHhCCc--cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC-CCHHHHHHHHhcCCCCCcchhHHH
Confidence 999999999999999999 99999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHH
Q 046194 162 ISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGF 241 (934)
Q Consensus 162 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 241 (934)
|.+|++.|++++|+++|++|++.|+ .||.+||+++|.+|++.++.+.
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~----~Pd~~ty~~ll~a~~~~g~~~~----------------------------- 306 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSV----DPDLMTITSVISACELLGDERL----------------------------- 306 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC----CCChhHHHHHHHHHHhcCChHH-----------------------------
Confidence 9999999999999999999999999 9999999999999998887766
Q ss_pred HhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCCC
Q 046194 242 ARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKD 321 (934)
Q Consensus 242 ~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 321 (934)
++++|+.+++.|+.||..+||+||++|+++|++++|.++|++|..||
T Consensus 307 ---------------------------------a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 353 (857)
T PLN03077 307 ---------------------------------GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353 (857)
T ss_pred ---------------------------------HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Confidence 67777777788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q 046194 322 SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSL 401 (934)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 401 (934)
+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHH
Q 046194 402 YADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQV 481 (934)
Q Consensus 402 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 481 (934)
|+++|++++|.++|++|.++|+++||+||.+|+++|+. ++|+.+|++|.. +++||..||+++|.+|++.|+++.+.++
T Consensus 434 y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~-~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRC-FEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCH-HHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 99999999999999999999999999999999999999 999999999986 6999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 046194 482 HAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH 561 (934)
Q Consensus 482 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 561 (934)
|..+.+.|+.++..++|+||++|+++|++++|.++|+.+ .||.++||+||.+|++.|+.++|+++|++|.+.|+.||.
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999999999999 459999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhchhhHHHHHHHHHHHH-HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC-CCCcccccHHHHHHHH
Q 046194 562 FTFATVLSACASVATLERGMEVHACGV-RACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP-VRNVYSWNSMISGYAR 639 (934)
Q Consensus 562 ~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~ 639 (934)
.||+.+|.+|++.|.+++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|+ +||..+|++|+.+|..
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999 68999999999999999999999999999999996 7899999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc
Q 046194 640 HGHGDKALTLFSQMKLDGPLPDH-VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE 699 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 699 (934)
+|+.+.+....+++.+ +.|+. ..|..+...|+..|++++|.++.+.|.+. |+++++.
T Consensus 670 ~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~g 727 (857)
T PLN03077 670 HRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDPG 727 (857)
T ss_pred cCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCCC
Confidence 9999999988888887 56764 45666667899999999999999999885 8887753
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-68 Score=634.65 Aligned_cols=473 Identities=23% Similarity=0.371 Sum_probs=444.3
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHHHHcC-CCCCcccHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhH
Q 046194 49 RNSVSWACIVSGYTHKGMSNEACKMFKEMVRAG-FLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSN 127 (934)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (934)
++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.+|.+|++. +++..+.++|..+.+.|+.||+.++|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 467799999999999999999999999999865 789999999999999999 99999999999999999999999999
Q ss_pred HHHHHhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcC
Q 046194 128 VLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSS 207 (934)
Q Consensus 128 ~li~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~ 207 (934)
+|+.+|+++ |+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+ .||..||+.+|++|++.
T Consensus 163 ~Li~~y~k~-g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~----~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 163 RVLLMHVKC-GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS----DAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHhcC-CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC----CCChhhHHHHHHHHhcC
Confidence 999999999 9999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred ccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcC
Q 046194 208 VLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGL 287 (934)
Q Consensus 208 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 287 (934)
+.... ++++|+.+.+.|+
T Consensus 238 ~~~~~--------------------------------------------------------------~~~l~~~~~~~g~ 255 (697)
T PLN03081 238 GSARA--------------------------------------------------------------GQQLHCCVLKTGV 255 (697)
T ss_pred CcHHH--------------------------------------------------------------HHHHHHHHHHhCC
Confidence 87655 7888888889999
Q ss_pred CCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 046194 288 FDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSC 367 (934)
Q Consensus 288 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 367 (934)
.+|.+++|+||++|+++|++++|.++|++|+++|+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++++|
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHH
Q 046194 368 ASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYY 447 (934)
Q Consensus 368 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~ 447 (934)
++.|+++.|+++|+.|.+.|+.||..++++||++|+++|++++|.++|++|.++|+++||+||.+|++.|+. ++|+++|
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~-~~A~~lf 414 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRG-TKAVEMF 414 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHH-hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 046194 448 LDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIK-YNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDE 526 (934)
Q Consensus 448 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 526 (934)
++|.+.|+.||..||++++.+|++.|.+++|.++|..|.+ .|+.|+..+|+.++++|++.|++++|.++|++|+..|+.
T Consensus 415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~ 494 (697)
T PLN03081 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494 (697)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH
Confidence 9999999999999999999999999999999999999976 699999999999999999999999999999999888999
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC
Q 046194 527 VSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEVHACGVRACLE 593 (934)
Q Consensus 527 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 593 (934)
.+|++|+.+|...|+.+.|..+++++.. +.|+ ..+|..+++.|++.|++++|.++++.|.+.|+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999988864 4453 456666666666666666666666666665554
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-67 Score=624.39 Aligned_cols=530 Identities=16% Similarity=0.219 Sum_probs=478.1
Q ss_pred CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCc
Q 046194 152 TRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDL 231 (934)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 231 (934)
.++...|..++..+++.|++++|+++|++|...|+ +.|+..+++.++.+|.+.+.... |..+++.|.. ||.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv---v~~~~v~~~~li~~~~~~g~~~e--Al~lf~~M~~----pd~ 437 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL---LDMDKIYHAKFFKACKKQRAVKE--AFRFAKLIRN----PTL 437 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHCCCHHH--HHHHHHHcCC----CCH
Confidence 35677799999999999999999999999998885 25788888899999998888877 8888887764 899
Q ss_pred cchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHH
Q 046194 232 YVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSR 311 (934)
Q Consensus 232 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 311 (934)
.+|+.||.+|++.|+++.|.++|++|. +.|+.||..+||+||++|+++|++++|.
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~-------------------------~~Gl~pD~~tynsLI~~y~k~G~vd~A~ 492 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQ-------------------------EAGLKADCKLYTTLISTCAKSGKVDAMF 492 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHH-------------------------HcCCCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 999999999999999999999998886 4588999999999999999999999999
Q ss_pred HHHhcCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhh--
Q 046194 312 SVFRFMI----GKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLK-- 385 (934)
Q Consensus 312 ~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-- 385 (934)
++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+
T Consensus 493 ~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~ 572 (1060)
T PLN03218 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 9999996 5799999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC----CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCccc
Q 046194 386 LGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE----HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVT 461 (934)
Q Consensus 386 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t 461 (934)
.|+.||..+|++||++|+++|++++|.++|+.|.+ ++..+||++|.+|++.|+. ++|+++|++|.+.|+.||..|
T Consensus 573 ~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~-deAl~lf~eM~~~Gv~PD~~T 651 (1060)
T PLN03218 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW-DFALSIYDDMKKKGVKPDEVF 651 (1060)
T ss_pred CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHH
Confidence 67899999999999999999999999999999975 5678999999999999999 999999999999999999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc---CCCcchHHHHHHHHHh
Q 046194 462 FINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE---RRDEVSWNSMISGYIH 538 (934)
Q Consensus 462 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~li~~~~~ 538 (934)
|+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++||.+|+++|++++|.++|++|.. .||.++||+||.+|++
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999976 3899999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHH----HhcCCHHH
Q 046194 539 NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMY----SKCGRIDY 614 (934)
Q Consensus 539 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y----~~~g~~~~ 614 (934)
.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|.+|.+.|+.||..+|++|+.++ .+++...+
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 34444444
Q ss_pred HHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCC
Q 046194 615 ASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGL 694 (934)
Q Consensus 615 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 694 (934)
+...|+.+...+...| .++|+.+|++|++.|+.||..||+.+|.++...+..+.+..+++.|... +.
T Consensus 812 ~v~~f~~g~~~~~n~w------------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~ 878 (1060)
T PLN03218 812 PVVSFDSGRPQIENKW------------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-AD 878 (1060)
T ss_pred hhhhhhccccccccch------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CC
Confidence 4444544333333444 4569999999999999999999999997777888888888888777653 67
Q ss_pred CCCcccHHHHHHHHhhcCChHHHHHHHHhC---CCCCCHH
Q 046194 695 IPQLEQFSCMVDLLGRAGELDKIEEFINKM---PITPNSL 731 (934)
Q Consensus 695 ~p~~~~y~~li~~l~~~g~~~~A~~~~~~m---~~~p~~~ 731 (934)
.|+..+|++|++++++. .++|..++++| ++.|+..
T Consensus 879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 77789999999998543 47899999999 7888765
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.8e-67 Score=618.65 Aligned_cols=533 Identities=15% Similarity=0.200 Sum_probs=423.9
Q ss_pred cCCCCchhhhHHHHHHhhcCChhhHHHhhccCCCCChh-----hHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcccH
Q 046194 15 GFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSV-----SWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYAL 89 (934)
Q Consensus 15 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 89 (934)
+-.++...|..+++.|++.|++++|.++|++|+.++.. .++.++.+|++.|..++|+.+|+.|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 34567778999999999999999999999999876554 445667779999999999999988864 899999
Q ss_pred HHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccC----CCCcccHHHHHHHH
Q 046194 90 GSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIE----TRDLISWNSIISVY 165 (934)
Q Consensus 90 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~----~~~~~~~~~li~~~ 165 (934)
+.+|.+|++. ++++.|.+++..|.+.|+.||..+||+||.+|+++ |+++.|.++|++|. .||+++||+||.+|
T Consensus 441 n~LL~a~~k~--g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy 517 (1060)
T PLN03218 441 NMLMSVCASS--QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999998 88999999999999999888888888888888888 88888888888887 47888888888888
Q ss_pred HcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHH--hCCCCCccchhHHHHHHHh
Q 046194 166 SQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKK--AGLLSDLYVGSALVSGFAR 243 (934)
Q Consensus 166 ~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~li~~~~~ 243 (934)
++.|++++|+++|++|+..|+ .||..||+++|.+|++.|+.+. |.++++.|.+ .|+.||..+|++||.+|++
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv----~PD~vTYnsLI~a~~k~G~~de--A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNV----KPDRVVFNALISACGQSGAVDR--AFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 888888888888888888887 7777777777776666665555 5555555544 3444555555555555555
Q ss_pred cCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCcc
Q 046194 244 LGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSV 323 (934)
Q Consensus 244 ~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~ 323 (934)
.|++++|.++|++|.+. | ..++..
T Consensus 592 ~G~ldeA~elf~~M~e~-------------------------g-------------------------------i~p~~~ 615 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEY-------------------------N-------------------------------IKGTPE 615 (1060)
T ss_pred CCCHHHHHHHHHHHHHc-------------------------C-------------------------------CCCChH
Confidence 55555555444444322 1 134667
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHH
Q 046194 324 SWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYA 403 (934)
Q Consensus 324 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 403 (934)
+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||++|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHhhCC----CCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHH
Q 046194 404 DAGYLSRCLKVFFLMP----EHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGH 479 (934)
Q Consensus 404 ~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 479 (934)
++|++++|.++|++|. .||.++||+||.+|++.|+. ++|+++|++|...|+.||..||+.++.+|++.|+++.|.
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~-eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL-PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999985 58999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046194 480 QVHAQVIKYNVANETTIENALLSCYG----KCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQR 555 (934)
Q Consensus 480 ~i~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 555 (934)
++|..|.+.|+.||..+|++|+.+|. +++...++...|+.+... +...|+ ++|+.+|++|++.
T Consensus 775 ~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~-~~n~w~------------~~Al~lf~eM~~~ 841 (1060)
T PLN03218 775 DLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ-IENKWT------------SWALMVYRETISA 841 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc-cccchH------------HHHHHHHHHHHHC
Confidence 99999999999999999999998743 333333333334322222 333343 5699999999999
Q ss_pred CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHH
Q 046194 556 GQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMIS 635 (934)
Q Consensus 556 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 635 (934)
|+.||..||+.+|.+++..+..+.+..+++.+...+..|+.. +|+++|.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~-------------------------------~y~~Li~ 890 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS-------------------------------NLSTLVD 890 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh-------------------------------hhHHHHH
Confidence 999999999988865555555555555555554444444444 4555555
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChh
Q 046194 636 GYARHGHGDKALTLFSQMKLDGPLPDHV 663 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 663 (934)
++.+. .++|+.+|++|.+.|+.|+..
T Consensus 891 g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 891 GFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 54321 368999999999999999975
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.8e-36 Score=376.33 Aligned_cols=765 Identities=11% Similarity=0.020 Sum_probs=450.6
Q ss_pred hhhHHHHHHHHhcCCCCchhhhHHHHHHhhcCChhhHHHhhccCCC----CChhhHHHHHHHHhcCCChhhHHHHHHHHH
Q 046194 3 DAKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPD----RNSVSWACIVSGYTHKGMSNEACKMFKEMV 78 (934)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 78 (934)
.|...+......+.. +......+...|.+.|+++.|...|..... .....+..+...|.+.|++++|...|+.+.
T Consensus 74 ~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 152 (899)
T TIGR02917 74 AAEKELRKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQAL 152 (899)
T ss_pred HHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455667777766653 344556677788888999999998877652 234566777778888889999999888887
Q ss_pred HcCCCCCcccHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCC---CCc
Q 046194 79 RAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIET---RDL 155 (934)
Q Consensus 79 ~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~---~~~ 155 (934)
+... .+...+..+...+... ++...+..+...+++.. ..+...+..+...|... |+.+.|.+.|+.... .+.
T Consensus 153 ~~~~-~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~p~~~ 227 (899)
T TIGR02917 153 AIDP-RSLYAKLGLAQLALAE--NRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSL-GNIELALAAYRKAIALRPNNP 227 (899)
T ss_pred hcCC-CChhhHHHHHHHHHHC--CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCH
Confidence 6542 2334556666666666 88888888888877754 24556677777777777 888888888877643 345
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchh
Q 046194 156 ISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGS 235 (934)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 235 (934)
..|..+...+...|++++|...++.+.+... .+..............|+.+. |...++.+.+.+.. +...+.
T Consensus 228 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--A~~~~~~~l~~~~~-~~~~~~ 299 (899)
T TIGR02917 228 AVLLALATILIEAGEFEEAEKHADALLKKAP-----NSPLAHYLKALVDFQKKNYED--ARETLQDALKSAPE-YLPALL 299 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHhcCHHH--HHHHHHHHHHhCCC-chhHHH
Confidence 5678888888888888888888888876532 222222222223345566655 77777777665422 123344
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcccchhh---hhh------hhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCC
Q 046194 236 ALVSGFARLGNFYYARKIFEQMIQKNVVSMN---GLM------EGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGT 306 (934)
Q Consensus 236 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~---~~l------~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 306 (934)
.+...+...|++++|...|+++.+.++.... .+. +....+......+++.. +.+..+++.+...|.+.|+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 4555666777777777777777554332211 111 22333333333333322 2345566667777777777
Q ss_pred hhHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHH
Q 046194 307 IDDSRSVFRFMIG---KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEG 383 (934)
Q Consensus 307 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 383 (934)
+++|.+.|+++.+ .+...|..+...+...|++++|++.|..+.+.... +......++..+...|+++.+..++..+
T Consensus 379 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777766533 24445666666666777777777777666653311 1223333445555666666666666666
Q ss_pred hhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcc
Q 046194 384 LKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGV 460 (934)
Q Consensus 384 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~ 460 (934)
.+. .+.+..++..+...|...|++++|...|+++.+ .+...+..+...+...|+. ++|.+.|+++.... +.+..
T Consensus 458 ~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~-~~~~~ 534 (899)
T TIGR02917 458 EKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP-DDAIQRFEKVLTID-PKNLR 534 (899)
T ss_pred HHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhC-cCcHH
Confidence 543 234455566666666666666666666665432 2344455555666666666 66666666665532 22344
Q ss_pred cHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--CCcchHHHHHHHHHh
Q 046194 461 TFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER--RDEVSWNSMISGYIH 538 (934)
Q Consensus 461 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~ 538 (934)
++..+...+...|+.+.+...+..+.+.+ +.+...+..+...|.+.|++++|..+++.+... .+...|..+...|..
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 55555555566666666666666655443 223344555666666666666666666665442 244556666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 046194 539 NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRF 618 (934)
Q Consensus 539 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 618 (934)
.|++++|+..|+++.... +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665432 2233445555555666666666666666555432 22345555566666666666666666
Q ss_pred hccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCC
Q 046194 619 FDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLI 695 (934)
Q Consensus 619 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 695 (934)
++.+.. .+...|..+...+...|++++|++.|+++.+. .|+..++..+..++.+.|++++|.+.++.+.+. .+
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~ 767 (899)
T TIGR02917 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HP 767 (899)
T ss_pred HHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC
Confidence 665542 23334555555566666666666666666553 344445555555556666666666666655542 22
Q ss_pred CCcccHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHH
Q 046194 696 PQLEQFSCMVDLLGRAGELDKIEEFINKM-PI-TPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLA 773 (934)
Q Consensus 696 p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~ 773 (934)
.+...+..+...|.+.|++++|.+.|+++ .. ++++.++..+...+... |+ +.|...+++++++.|+++..+..++
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL--KD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--Cc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 33555555556666666666666666555 22 23344555555555555 55 5555555555555555555555555
Q ss_pred HHHHcCCChHHHHHHHHHHHhCC
Q 046194 774 NMYASGGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 774 ~~~~~~g~~~~a~~~~~~m~~~~ 796 (934)
.+|...|++++|.+.++++.+.+
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC
Confidence 55555555555555555555433
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.4e-36 Score=374.51 Aligned_cols=668 Identities=10% Similarity=-0.001 Sum_probs=518.9
Q ss_pred CChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCC---CCcccHHHHHHHHHcCCCchHHHHHH
Q 046194 102 SGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIET---RDLISWNSIISVYSQRGDTISVFKLF 178 (934)
Q Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 178 (934)
+++..|...+..+++... .+...+..+...|... |+++.|.++++.+.. ++...|..+...+...|++++|...|
T Consensus 139 ~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 216 (899)
T TIGR02917 139 GQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAE-NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216 (899)
T ss_pred CCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 566666666666655443 2344555666666666 677777776665532 23345666666666677777777777
Q ss_pred HHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhh
Q 046194 179 SRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMI 258 (934)
Q Consensus 179 ~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 258 (934)
++..... +.+..++..+...+...|+.+. |...++.+.+.... +...+......+...|++++|...|+++.
T Consensus 217 ~~a~~~~-----p~~~~~~~~~~~~~~~~g~~~~--A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 288 (899)
T TIGR02917 217 RKAIALR-----PNNPAVLLALATILIEAGEFEE--AEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDAL 288 (899)
T ss_pred HHHHhhC-----CCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7666543 3345555556666666666666 66666666654422 22233334444556677777777777765
Q ss_pred hcccchhhhhh---------hhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCC---CcccHH
Q 046194 259 QKNVVSMNGLM---------EGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGK---DSVSWN 326 (934)
Q Consensus 259 ~~~~~~~~~~l---------~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~ 326 (934)
+.++....+.. +....+...+..+++.. +.+......+...+.+.|++++|...++.+... +...|+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 367 (899)
T TIGR02917 289 KSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALS 367 (899)
T ss_pred HhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 54433221111 33444555555555443 345667778888999999999999999887543 566888
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhc
Q 046194 327 TMISGLDQNGCYEEAIMNFCAMRRDGLMSS-NFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADA 405 (934)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 405 (934)
.+...+.+.|++++|.++|+++.+. .|+ ...+..+...+...|+.+.|...+..+.+.... +......++..|.+.
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhc
Confidence 9999999999999999999999874 343 445666667778899999999999998876532 344566788899999
Q ss_pred CChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHH
Q 046194 406 GYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVH 482 (934)
Q Consensus 406 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 482 (934)
|++++|..+++.+.. .+..+|+.+...+...|++ ++|.+.|+++.+.. +.+...+..+...+...|+++.|.+.+
T Consensus 445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDL-AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCH-HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998864 3667899999999999999 99999999998753 233456677888889999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046194 483 AQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD 560 (934)
Q Consensus 483 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 560 (934)
..+.+.. +.+...+..+...|.+.|+.++|...|+++... | +...+..++..|...|++++|+.+++++... .+.+
T Consensus 523 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~ 600 (899)
T TIGR02917 523 EKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDS 600 (899)
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCC
Confidence 9998765 346678889999999999999999999998664 3 5667888999999999999999999999875 3556
Q ss_pred HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHH
Q 046194 561 HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGY 637 (934)
Q Consensus 561 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 637 (934)
..++..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++|..+|+.+.. .+..+|..++..+
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 7889999999999999999999999998754 33677888999999999999999999998763 3567899999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKI 717 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 717 (934)
...|++++|+.+++.+.+.+ +++...+..+...+...|++++|.+.|+.+.. ..|+...+..++.++.+.|++++|
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999875 44567788888889999999999999999976 457778888999999999999999
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 718 EEFINKM-P-ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 718 ~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.+.++++ . .+.+...+..+...+... |+.+.|...++++++..|+++..+..++++|...|+ .+|.+.++++.+.
T Consensus 756 ~~~~~~~l~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVLRTALAELYLAQ--KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHC--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 9999988 3 344677888888888888 999999999999999999999999999999999999 8899998888764
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=1.6e-32 Score=237.30 Aligned_cols=105 Identities=63% Similarity=1.120 Sum_probs=96.7
Q ss_pred ceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHHCCcccCCCcccccCCchhh--------hhhhhcccHHHHH
Q 046194 802 GCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESK--------EDLVSYHSEKIAV 873 (934)
Q Consensus 802 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 873 (934)
||||+++ |.|.+||.+||+. ++..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899987 9999999999998 566777888999999999888877655 6689999999999
Q ss_pred HHHhc-CCCCCcEEEEccc-cccCchhhHHHhHhhhhCcEEEEecCCcccccC
Q 046194 874 AFVLT-RNSKLPIRIMKNL-RVCGDCHSAFKFISKIVGREIVLRDSNRFHHFN 924 (934)
Q Consensus 874 ~~~~~-~~~~~~~~~~~n~-~~~~~ch~~~~~~s~~~~~~~~~~d~~~~h~f~ 924 (934)
||||+ + +|+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999 6 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=2e-21 Score=242.45 Aligned_cols=610 Identities=11% Similarity=0.040 Sum_probs=431.0
Q ss_pred HHhhhCCCChHHHHHHhhccCC--C-CcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHH--------
Q 046194 131 AMYGSCLESTDCARRIFEEIET--R-DLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGS-------- 199 (934)
Q Consensus 131 ~~y~~~~g~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~-------- 199 (934)
..+-.. ++.+.|++.++++.. | |...+..+...+.+.|+.++|.+.+++..+. .|+...+..
T Consensus 36 ~~~~~~-~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~------~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 36 RLGEAT-HREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL------APDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHhh-CChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHhc
Confidence 344444 899999999987753 3 5566888899999999999999999999886 454433321
Q ss_pred ---------HHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhh
Q 046194 200 ---------LITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLME 270 (934)
Q Consensus 200 ---------ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~ 270 (934)
..+.+...|+.+. |.+.++...+............+.......|+.++|++.|+++.+.+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~e--A~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--------- 177 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEE--ALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--------- 177 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHH--HHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC---------
Confidence 1223445555555 66666665543221111001011111123466666666666665433
Q ss_pred hhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCc------ccH-----------------HH
Q 046194 271 GRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDS------VSW-----------------NT 327 (934)
Q Consensus 271 ~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~------~~~-----------------~~ 327 (934)
+.+......+...+...|+.++|+..|+++..... ..| ..
T Consensus 178 -----------------P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~ 240 (1157)
T PRK11447 178 -----------------PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQK 240 (1157)
T ss_pred -----------------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHH
Confidence 23455667788889999999999999998744221 111 11
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCC
Q 046194 328 MISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGY 407 (934)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 407 (934)
.+..+-.......|...+..+....-.|+... ...-.++...|+++.|...++.+++.. +.+..++..|...|.+.|+
T Consensus 241 ~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~ 318 (1157)
T PRK11447 241 YLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGD 318 (1157)
T ss_pred HHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 11111222234455555555544322333221 122344567899999999999998864 3467788899999999999
Q ss_pred hHHHHHHHhhCCC--CCc---cchHHH------------HHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 046194 408 LSRCLKVFFLMPE--HDQ---VSWNSV------------IGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAAS 470 (934)
Q Consensus 408 ~~~A~~~f~~~~~--~~~---~~~~~l------------i~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 470 (934)
+++|...|++..+ |+. ..|..+ ...+.+.|++ ++|+..|++..+.. +.+...+..+...+.
T Consensus 319 ~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~-~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~ 396 (1157)
T PRK11447 319 RARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL-AQAERLYQQARQVD-NTDSYAVLGLGDVAM 396 (1157)
T ss_pred HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 9999999988764 221 123222 3356788999 99999999998763 233455667778899
Q ss_pred ccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C----------CcchHHHHHHHHHhc
Q 046194 471 SFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R----------DEVSWNSMISGYIHN 539 (934)
Q Consensus 471 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p----------~~~~~~~li~~~~~~ 539 (934)
..|++++|.+.++.+++... .+...+..+...|. .++.++|...++.+... + ....+..+...+...
T Consensus 397 ~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~ 474 (1157)
T PRK11447 397 ARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ 474 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 99999999999999987653 33455666777775 46789999999877543 1 122355567778899
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 046194 540 ELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRF 618 (934)
Q Consensus 540 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 618 (934)
|++++|++.|++.+.. .|+ ...+..+...+.+.|++++|...++.+++... .+...+..+...+.+.|+.++|...
T Consensus 475 g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 475 GKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999875 454 45667788889999999999999999887432 2445555555667889999999999
Q ss_pred hccCCCCC----cc---------cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 619 FDLMPVRN----VY---------SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 619 ~~~~~~~~----~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
++.+.... .. .+..+...+...|+.++|+++++. .+++...+..+...+.+.|+.++|+..|
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 99886321 11 122456678899999999999882 2344556677788899999999999999
Q ss_pred HHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 686 KSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 686 ~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
+...+ ..|+ ...+..++.+|...|++++|++.++.. ...|+ ..++..+..++... |+.++|...++++++..
T Consensus 627 ~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~--g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 627 QRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL--GDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHhhhC
Confidence 99987 3455 788899999999999999999999987 45554 55677777778777 99999999999999988
Q ss_pred CCCCc------hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 763 PQNAV------NYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 763 p~~~~------~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|+++. .+..++.++...|++++|.+.++....
T Consensus 702 ~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 702 KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 76654 566789999999999999999887653
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.3e-20 Score=223.41 Aligned_cols=625 Identities=11% Similarity=0.017 Sum_probs=425.1
Q ss_pred CChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCCCCc--ccHHHHHHHHHcCCCchHHHHHHH
Q 046194 102 SGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDL--ISWNSIISVYSQRGDTISVFKLFS 179 (934)
Q Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~ 179 (934)
|+...|...+..+++..+.. ..++..|...|.+. |+.+.|+..+++..+.|. .-|..++..+ ++.++|..+|+
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~-g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHF-GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 44444444444444444333 56667788888888 999999999988875332 3344434333 88999999999
Q ss_pred HHHHccCCCCCCCCce-eHHHHHHH--------HhcCccccchHHHHHHHHHHHhCCCCCccchhHH-HHHHHhcCChHH
Q 046194 180 RMQREGFRYSLKPNEY-TFGSLITA--------AYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSAL-VSGFARLGNFYY 249 (934)
Q Consensus 180 ~m~~~g~~~~~~p~~~-t~~~ll~a--------~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~ 249 (934)
++... .|+.. .+..+... +.+. +. +.+.++ .......|+..+...+ ...|.+.|++++
T Consensus 133 ~l~~~------~P~n~~~~~~la~~~~~~~~l~y~q~---eq--Al~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 133 ELLAQ------QKACDAVPTLRCRSEVGQNALRLAQL---PV--ARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred HHHHh------CCCChhHHHHHHHHhhccchhhhhhH---HH--HHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 99887 45433 33333332 2222 33 677776 4445555556666666 999999999999
Q ss_pred HHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhc-cCChhHHHHHHhcCCCCCcccHHHH
Q 046194 250 ARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAK-CGTIDDSRSVFRFMIGKDSVSWNTM 328 (934)
Q Consensus 250 A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~l 328 (934)
|+.+++++.+.++.+ ......|-..|.. .++ ++|..+++...+.|...+..+
T Consensus 201 Ai~lL~~L~k~~pl~--------------------------~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~al 253 (987)
T PRK09782 201 ADTLYNEARQQNTLS--------------------------AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITY 253 (987)
T ss_pred HHHHHHHHHhcCCCC--------------------------HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHH
Confidence 999999998764332 2222344456666 355 888888776555688889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCc-hhHHHHHHHHHHhcC
Q 046194 329 ISGLDQNGCYEEAIMNFCAMRRDGLM-SSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSD-VSVSNALLSLYADAG 406 (934)
Q Consensus 329 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g 406 (934)
...|.+.|+.++|..+++++...-.. |...++.-.+.-..... ..+..-+. + .+.++ ....-.+++.+.+.+
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~--~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 327 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP--VQALANYT---V-QFADNRQYVVGATLPVLLKEG 327 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch--hhhccchh---h-hhHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998765433 66666655544333221 11111110 0 01111 123344578888999
Q ss_pred ChHHHHHHHhhCCCCCccchHHHHH-HH-HhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHH
Q 046194 407 YLSRCLKVFFLMPEHDQVSWNSVIG-AF-ADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQ 484 (934)
Q Consensus 407 ~~~~A~~~f~~~~~~~~~~~~~li~-~~-~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 484 (934)
+++.+.++.. ....+. . ..+. ++ ...+.. .++...++.|.+.. +-+......+---....|+.++|.+++..
T Consensus 328 ~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~-~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~ 401 (987)
T PRK09782 328 QYDAAQKLLA-TLPANE-M--LEERYAVSVATRNK-AEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQ 401 (987)
T ss_pred HHHHHHHHhc-CCCcch-H--HHHHHhhccccCch-hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9998887744 222222 1 2222 22 233555 67777777776541 11222222222334567888888888888
Q ss_pred HHHh-c-CCCchhHHHHHHHHHHhcCC---HHHHHHH-------------------------HHhhccC-C---CcchHH
Q 046194 485 VIKY-N-VANETTIENALLSCYGKCGE---MDDCEKI-------------------------FARMSER-R---DEVSWN 530 (934)
Q Consensus 485 ~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~-------------------------~~~~~~~-p---~~~~~~ 530 (934)
.... + -..+....+-|+..|.+.+. ..++..+ +...... | +...|.
T Consensus 402 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~ 481 (987)
T PRK09782 402 RYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWN 481 (987)
T ss_pred hcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHH
Confidence 7652 1 22345556677888887766 2333222 1111111 2 445677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 046194 531 SMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCG 610 (934)
Q Consensus 531 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 610 (934)
.+..++.. +++++|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+...+.+.|
T Consensus 482 ~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G 556 (987)
T PRK09782 482 RLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC
Confidence 77777766 8899999988887764 466655444555557899999999999987654 344444566778889999
Q ss_pred CHHHHHHHhccCCCCCcccccHHHH---HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHH
Q 046194 611 RIDYASRFFDLMPVRNVYSWNSMIS---GYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKS 687 (934)
Q Consensus 611 ~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 687 (934)
+.++|...|+...+.+...++.... .....|++++|+..|++..+ ..|+...+..+..++.+.|++++|...|++
T Consensus 557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 557 NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998877544333333332 33345999999999999998 467877888888999999999999999999
Q ss_pred hHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 688 MSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 688 m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
..+ +.|+ ...+..+..++...|++++|++.+++. ...| +...+..+..++... |+.+.|+..++++++++|+
T Consensus 635 AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l--Gd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 635 ALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL--DDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCC
Confidence 977 4566 778888999999999999999999987 5566 467889999999999 9999999999999999999
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 765 NAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 765 ~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+..+....+++..+..+++.|.+-++..-.
T Consensus 710 ~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 710 QALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999886655443
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=7.7e-21 Score=237.17 Aligned_cols=590 Identities=10% Similarity=0.008 Sum_probs=429.9
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCcc--------
Q 046194 161 IISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLY-------- 232 (934)
Q Consensus 161 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~-------- 232 (934)
.+.-+...++.+.|.+.++++.... +-|...+..+...+...|+.+. |.+.++...+........
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-----p~~p~~~~~~~~~~l~~g~~~~--A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-----PNNPDVIAARFRLLLRQGDSDG--AQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-----CCCHHHHHHHHHHHHhCCCHHH--HHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 4455667899999999999987763 3466677778888889999888 999999998876322111
Q ss_pred -------chhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHH-HHHhhcc
Q 046194 233 -------VGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGL-VNMYAKC 304 (934)
Q Consensus 233 -------~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~ 304 (934)
....+...+.+.|++++|.+.|+.+.+.++. +....... .......
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~--------------------------~~~la~~y~~~~~~~~ 160 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP--------------------------ELDLAVEYWRLVAKLP 160 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC--------------------------ChHHHHHHHHHHhhCC
Confidence 1234455788999999999999998764321 11111111 1122345
Q ss_pred CChhHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----------------CChh---hHHH
Q 046194 305 GTIDDSRSVFRFMIGK---DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLM----------------SSNF---SLIS 362 (934)
Q Consensus 305 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------------p~~~---t~~~ 362 (934)
|+.++|++.|+++.+. +...+..+...+...|++++|+..|+++...... ++.. .+..
T Consensus 161 g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~ 240 (1157)
T PRK11447 161 AQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQK 240 (1157)
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHH
Confidence 8999999999998653 5567888999999999999999999998663210 0000 1111
Q ss_pred HHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCcc
Q 046194 363 TLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEAL 439 (934)
Q Consensus 363 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 439 (934)
.+..+........+...+....+....|+.. ...+...+...|++++|...|++... .+...+..+...|.+.|++
T Consensus 241 ~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~ 319 (1157)
T PRK11447 241 YLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDR 319 (1157)
T ss_pred HHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 1222222223344445554443332233322 22345677889999999999998754 3667889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCc-ccHH------------HHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 046194 440 VSEAVKYYLDMRRAGWSPNG-VTFI------------NILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGK 506 (934)
Q Consensus 440 ~~~A~~l~~~m~~~g~~p~~-~t~~------------~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 506 (934)
++|+..|++..+....... ..+. .....+...|++++|...+..+++... .+...+..+...|..
T Consensus 320 -~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 320 -ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMA 397 (1157)
T ss_pred -HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 9999999998875432211 1111 123456788999999999999988753 455677788999999
Q ss_pred cCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--------CCHhHHHHHHHHHhchhh
Q 046194 507 CGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQR--------LDHFTFATVLSACASVAT 576 (934)
Q Consensus 507 ~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~ 576 (934)
.|++++|++.|++.... | +...+..+...|. .++.++|+.+++.+...... .....+......+...|+
T Consensus 398 ~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~ 476 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK 476 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence 99999999999998764 4 4556667777774 46789999988765432100 011234445566778999
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHH
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQM 653 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 653 (934)
+++|.+.++.+++.... +...+..+...|.+.|++++|...|+.+.. | +...+..+...+...|+.++|+..++++
T Consensus 477 ~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 477 WAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 99999999999885432 567778899999999999999999998753 3 3445555556677899999999999987
Q ss_pred HHCCCCCChh---------hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 654 KLDGPLPDHV---------TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 654 ~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
......++.. .+..+...+...|+.++|.++++. .+++...+..+.+.+.+.|++++|++.+++.
T Consensus 556 ~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a 629 (1157)
T PRK11447 556 PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRV 629 (1157)
T ss_pred CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5433222221 133456678899999999998872 2344667788999999999999999999988
Q ss_pred -CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 046194 725 -PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 725 -~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 796 (934)
...| +...+..+...+... |+.++|+..++++.+..|+++..+..++.++...|++++|.++++.+.+..
T Consensus 630 l~~~P~~~~a~~~la~~~~~~--g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 630 LTREPGNADARLGLIEVDIAQ--GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 5555 477889999999999 999999999999999999999999999999999999999999999887643
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=2.8e-18 Score=203.81 Aligned_cols=668 Identities=10% Similarity=0.011 Sum_probs=364.1
Q ss_pred hhcCChhhHHHhhccCCC--C-ChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcccHHHHHHHhhhcCCCChhhh
Q 046194 31 VRVGDLASASKLFDEMPD--R-NSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFG 107 (934)
Q Consensus 31 ~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~ 107 (934)
...|++++|...|....+ | +...+..|...|.+.|+.++|+..+++..+. .|+...|..++..+ +....+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i-----~~~~kA 127 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI-----PVEVKS 127 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh-----ccChhH
Confidence 334999999999988753 3 5667889999999999999999999988774 46655555555333 566677
Q ss_pred hHHHHHHHHhcCCCCchhhHHHHHH--------hhhCCCChHHHHHHhhccCCCC--cccHH-HHHHHHHcCCCchHHHH
Q 046194 108 MQVHCLVLKSNQTFDGLVSNVLIAM--------YGSCLESTDCARRIFEEIETRD--LISWN-SIISVYSQRGDTISVFK 176 (934)
Q Consensus 108 ~~~~~~~~~~g~~~~~~~~~~li~~--------y~~~~g~~~~a~~~f~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~ 176 (934)
..++..+++.... +..++..+... |.+. +....+.+ .....|+ ..... .....|.+.|++++|++
T Consensus 128 ~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~-eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 128 VTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL-PVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH-HHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 7888888876532 23344444443 7776 66666666 3333343 43334 44889999999999999
Q ss_pred HHHHHHHccCCCCCCCCceeHHHHHHHHhc-CccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHH
Q 046194 177 LFSRMQREGFRYSLKPNEYTFGSLITAAYS-SVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFE 255 (934)
Q Consensus 177 l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~-~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 255 (934)
++.++.+.+. .+..-...+-.++.. .++ +. +..++. ..+.-+...+..+...|.+.|+.++|.++++
T Consensus 204 lL~~L~k~~p-----l~~~~~~~L~~ay~q~l~~-~~--a~al~~----~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 204 LYNEARQQNT-----LSAAERRQWFDVLLAGQLD-DR--LLALQS----QGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHhcCC-----CCHHHHHHHHHHHHHhhCH-HH--HHHHhc----hhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999863 333334455555555 344 22 555533 2444678889999999999999999999999
Q ss_pred Hhhhc-----ccchhhhhhhhhhhhhHHH-HHHHHHcCCCc-hhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHH
Q 046194 256 QMIQK-----NVVSMNGLMEGRRKGKEVH-GYLIRSGLFDM-VAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTM 328 (934)
Q Consensus 256 ~m~~~-----~~~~~~~~l~~~~~~~~~~-~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 328 (934)
+++.. +..+|--.+.........- ....+ .+.++ ....-.++..+.+.++.+.|.++.+ ....+.. ..
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~ 346 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV-QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEM---LE 346 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhh-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchH---HH
Confidence 98643 2234433331111110000 00001 11111 1122334777888888887777744 2222321 22
Q ss_pred HHHH--HhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCchHHHHHHHHHHhhh-C-CCCchhHHHHHHHHHH
Q 046194 329 ISGL--DQNGCYEEAIMNFCAMRRDGLMS-SNFSLISTLSSCASLGWIMLGQQIHGEGLKL-G-LDSDVSVSNALLSLYA 403 (934)
Q Consensus 329 i~~~--~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~li~~y~ 403 (934)
+... ...+...++...+..|.+. .| +......+---....|+.++|.+++...... + -..+..+.+.|+..|.
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 2222 2345666666666667653 12 2222222222234567777777777777652 1 2234556667777777
Q ss_pred hcCChHHHHHHHhh---CCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHc-CCCCCcccHHHHHHHHhccCCchHHH
Q 046194 404 DAGYLSRCLKVFFL---MPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRA-GWSPNGVTFINILAAASSFSMGKLGH 479 (934)
Q Consensus 404 ~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~ 479 (934)
+.+......++..- +..+....| .|+. .++...+...... +..|+.
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~al~~~p~~-------------------- 474 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQW---------QSQL-PGIADNCPAIVRLLGDMSPS-------------------- 474 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHH---------Hhhh-hhhhhhHHHHHHhcccCCCC--------------------
Confidence 77764333333222 222221111 1111 2222222222111 111220
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046194 480 QVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQR 558 (934)
Q Consensus 480 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 558 (934)
-+...+..+..++.. ++.++|...|.+.... |+......+...+...|++++|...|+++... .
T Consensus 475 ------------~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 475 ------------YDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred ------------CCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 022333344444443 4555555544443332 33221111222223455555555555554332 2
Q ss_pred CCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC--CCCcccccHHHHH
Q 046194 559 LDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP--VRNVYSWNSMISG 636 (934)
Q Consensus 559 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 636 (934)
|+...+..+..++.+.|+.+.|.+.+..+++... .+...+..+.......|++++|...|++.. .|+...|..+...
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~ 618 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATI 618 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3333333444445555555555555555554321 122222222223334466666666666554 3455566666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCCh
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGEL 714 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~ 714 (934)
+.+.|++++|+..|++..+ ..|+ ...+..+..++...|+.++|+..|+...+ +.|+ ...+..+..++.+.|++
T Consensus 619 l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~---l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK---GLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCH
Confidence 6666777777777776666 3455 33444455566666777777776666655 3344 55666666677777777
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 046194 715 DKIEEFINKM-PITPNS-LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 782 (934)
++|++.+++. ...|+. .+-.......... .+++.+.+.+++...++|... +....+.++...++.
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~--~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLTPEQNQQR--FNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhhhHHHHHH--HHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 7777766665 455543 2333333344444 556666666666666666654 555555555444443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=3.6e-18 Score=178.42 Aligned_cols=449 Identities=12% Similarity=0.104 Sum_probs=352.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH-HhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHH
Q 046194 325 WNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLS-SCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYA 403 (934)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 403 (934)
-..|..-..+.|++++|.+.-...-.. .|+..--..+++ .+....+++...+--...++.. +.-..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 345556667788888888765544332 222222222222 2333334443333222222221 233567888999999
Q ss_pred hcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHH-HHhccCCchHHH
Q 046194 404 DAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILA-AASSFSMGKLGH 479 (934)
Q Consensus 404 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~ 479 (934)
..|++++|+.+++.+.+ ..+..|..+..++...|+. +.|.+.|.+..+ +.|+.+...+-+. .....|++++|.
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~-~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDL-ELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCC-cccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 99999999999998765 3567899999999999999 999999988876 4565554443332 234468889999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046194 480 QVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ 557 (934)
Q Consensus 480 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 557 (934)
..+...++... .-...|+.|...+-..|++..|+..|++...- | -...|-.|-..|...+.+++|+.-|.+... .
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--l 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--L 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--c
Confidence 88888776543 23456788888999999999999999988764 4 345788899999999999999999988776 4
Q ss_pred CCCH-hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CC-cccccH
Q 046194 558 RLDH-FTFATVLSACASVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV--RN-VYSWNS 632 (934)
Q Consensus 558 ~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~ 632 (934)
.|+. +.+..+...|-..|.++.|...+++.+.. +| -...|+.|..++-..|++.+|.+.+..... |+ ..+.+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 6654 67777777788999999999999998874 44 367899999999999999999999998763 43 448889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhh
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGR 710 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~ 710 (934)
|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..|++..+ +.|+ ...|+.|...|-.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHH
Confidence 99999999999999999999998 7888 66799999999999999999999999875 8999 8899999999999
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH
Q 046194 711 AGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 711 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
.|+.+.|.+.+.+. .+.|. ....+.|...+... |++.+|...++.++++.|+.+..|..+...+---.+|.+-.+.
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs--Gni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS--GNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc--CCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 99999999999887 77886 45788899999999 9999999999999999999999999999998888888885444
Q ss_pred HHH
Q 046194 789 RKA 791 (934)
Q Consensus 789 ~~~ 791 (934)
+++
T Consensus 513 ~~k 515 (966)
T KOG4626|consen 513 MKK 515 (966)
T ss_pred HHH
Confidence 333
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.6e-16 Score=172.03 Aligned_cols=592 Identities=13% Similarity=0.091 Sum_probs=386.5
Q ss_pred chHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcC--ccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChH
Q 046194 171 TISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSS--VLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFY 248 (934)
Q Consensus 171 ~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 248 (934)
.+.|...|....+.. ++|. ...+.+||... ++... +..+|.........--+...-.+...+.+.|+.+
T Consensus 146 ~~~A~a~F~~Vl~~s-----p~Ni--l~LlGkA~i~ynkkdY~~--al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~ 216 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-----PDNI--LALLGKARIAYNKKDYRG--ALKYYKKALRINPACKADVRIGIGHCFWKLGMSE 216 (1018)
T ss_pred HHHHHHHHHHHHhhC-----Ccch--HHHHHHHHHHhccccHHH--HHHHHHHHHhcCcccCCCccchhhhHHHhccchh
Confidence 478888888877763 2332 34456666644 45555 8888888665443322223333446778999999
Q ss_pred HHHHHHHHhhhcccchhhhhh------------hhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhc
Q 046194 249 YARKIFEQMIQKNVVSMNGLM------------EGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRF 316 (934)
Q Consensus 249 ~A~~l~~~m~~~~~~~~~~~l------------~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 316 (934)
.|+..|.+..+-|+.+.++++ .....|..+.....+. -..|+++.+.|.+.|.-.|++..+..+...
T Consensus 217 ~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 217 KALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 999999999999987777777 1122222222222221 145788889999999999999999888877
Q ss_pred CCCCC------cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH--HHHHHhhccCchHHHHHHHHHHhhhCC
Q 046194 317 MIGKD------SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLI--STLSSCASLGWIMLGQQIHGEGLKLGL 388 (934)
Q Consensus 317 ~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~g~ 388 (934)
+...+ ..+|-.+.++|-..|++++|...|.+..+ ..||.+++. -+-+.+...|+++.+...|+.+.+..
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~- 372 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL- 372 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-
Confidence 65432 34578888999999999999999987766 456654443 35567778899999999999888763
Q ss_pred CCchhHHHHHHHHHHhcC----ChHHHHHHHhhCCCC---CccchHHHHHHHHhCCccHHHHHHHHHHH----HHcCCCC
Q 046194 389 DSDVSVSNALLSLYADAG----YLSRCLKVFFLMPEH---DQVSWNSVIGAFADSEALVSEAVKYYLDM----RRAGWSP 457 (934)
Q Consensus 389 ~~~~~~~~~li~~y~~~g----~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m----~~~g~~p 457 (934)
+.+..+...|...|...+ ..+.|..+..+...+ |...|-.+...+-+... ..++..|... ...+-.+
T Consensus 373 p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~--~~sL~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 373 PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP--WASLDAYGNALDILESKGKQI 450 (1018)
T ss_pred cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHcCCCC
Confidence 445567777777787775 566777777776654 45566666666655443 3446666543 3455556
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHHh---cCCCch------hHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcc
Q 046194 458 NGVTFINILAAASSFSMGKLGHQVHAQVIKY---NVANET------TIENALLSCYGKCGEMDDCEKIFARMSER-RDEV 527 (934)
Q Consensus 458 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~---g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~ 527 (934)
.....+.+.......|+++.|...+...... -..++. .+--.+...+-..++.+.|.+.+..+... |.-+
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YI 530 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYI 530 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhH
Confidence 7777888888888888988888888776554 112222 22333455566677888888888888775 4433
Q ss_pred h-HHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhC-CCCcHhHHHHHHH
Q 046194 528 S-WNSMISGYIHNELLPKAMNLVWFMMQR-GQRLDHFTFATVLSACASVATLERGMEVHACGVRAC-LEFDVVIGSALVD 604 (934)
Q Consensus 528 ~-~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~ 604 (934)
. |--+...-...+...+|..++.+.... .-.|+..+| +-..+.....+..|..-+..+.+.- -.+|+++.-+|.+
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 2 222222222346677888888887653 234444443 3335555666666766555554432 2257777777776
Q ss_pred HHHh------------cCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 046194 605 MYSK------------CGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVL 669 (934)
Q Consensus 605 ~y~~------------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 669 (934)
.|.. .+..+.|.++|..+.+ +|...=|-+.-.++..|++.+|..+|.+..+... -+.-+|..+.
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNla 687 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLA 687 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHH
Confidence 5542 2446778888887653 4566777788888888888888888888888642 3445677888
Q ss_pred HHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH--HHHHHHHHHHhccCC
Q 046194 670 SACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSL--IWRTVLGACCRANCR 746 (934)
Q Consensus 670 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~--~~~~ll~~~~~~~~~ 746 (934)
.+|...|.+..|++.|+...+++.-.-+.....+|..++.++|.+.+|.+..... ...|... .||..+-.
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~------- 760 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL------- 760 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH-------
Confidence 8888888888888888888887776666888888888888888888888777655 3444322 22222211
Q ss_pred CcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCc
Q 046194 747 KTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVK 798 (934)
Q Consensus 747 ~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 798 (934)
.+..+.+++.++. .+=.+....+..++|.++|..|...+-+
T Consensus 761 -----kkla~s~lr~~k~------t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 761 -----KKLAESILRLEKR------TLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred -----HHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1222333333331 2223344445567777777777765544
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-16 Score=167.42 Aligned_cols=434 Identities=16% Similarity=0.206 Sum_probs=295.9
Q ss_pred hhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHH
Q 046194 234 GSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSV 313 (934)
Q Consensus 234 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 313 (934)
...|..-..+.|++++|++.-...-+.|+..-..++ -+-..+..+.+++....-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~ll--------------------------ll~ai~~q~~r~d~s~a~ 104 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLL--------------------------LLSAIFFQGSRLDKSSAG 104 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCccccee--------------------------eehhhhhcccchhhhhhh
Confidence 345556667889999999988877665543222211 000122222222222211
Q ss_pred HhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCchHHHHHHHHHHhhhCCC
Q 046194 314 FRFMIG---KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSS-NFSLISTLSSCASLGWIMLGQQIHGEGLKLGLD 389 (934)
Q Consensus 314 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 389 (934)
-....+ .-..+|..+...+-..|++++|+.+|+.|.+ ++|+ ...|..+-.++...|+.+.|.+.+...++. .
T Consensus 105 ~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql--n 180 (966)
T KOG4626|consen 105 SLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--N 180 (966)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--C
Confidence 111111 1233555555666666666666666666655 3332 234555555555555555555555555442 3
Q ss_pred CchhHH-HHHHHHHHhcCChHHHHHHHhhCCC--C-CccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHH
Q 046194 390 SDVSVS-NALLSLYADAGYLSRCLKVFFLMPE--H-DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINI 465 (934)
Q Consensus 390 ~~~~~~-~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~l 465 (934)
|+.... +-+....-..|++.+|...+.+..+ | -.+.|+.|...+-..|+. ..|++.|++.... .|+-
T Consensus 181 P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei-~~aiq~y~eAvkl--dP~f------ 251 (966)
T KOG4626|consen 181 PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEI-WLAIQHYEEAVKL--DPNF------ 251 (966)
T ss_pred cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchH-HHHHHHHHHhhcC--CCcc------
Confidence 433322 2233334445667666666655433 2 345777777777777877 7788777776542 2321
Q ss_pred HHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc-CC-CcchHHHHHHHHHhcCChh
Q 046194 466 LAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE-RR-DEVSWNSMISGYIHNELLP 543 (934)
Q Consensus 466 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~ 543 (934)
...|-.|-..|...+.++.|...+.+... +| ..+.+..|...|-..|..+
T Consensus 252 ----------------------------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 252 ----------------------------LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLD 303 (966)
T ss_pred ----------------------------hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHH
Confidence 12344566677777777888777766544 35 5667777888888899999
Q ss_pred HHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccC
Q 046194 544 KAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLM 622 (934)
Q Consensus 544 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 622 (934)
-|+..|++.+. +.|+ ...|+.+..|+-..|++.+|.+.+......... .....+.|...|...|.+++|..+|...
T Consensus 304 lAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 304 LAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999988876 4565 478889999999999999999999888875332 4566778999999999999999999877
Q ss_pred CC--CC-cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-
Q 046194 623 PV--RN-VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ- 697 (934)
Q Consensus 623 ~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 697 (934)
.. |. ....|.|...|-++|+.++|+..|++... ++|+ ...|+.+...|-..|+++.|.+.+.+... +.|.
T Consensus 381 l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~ 455 (966)
T KOG4626|consen 381 LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ---INPTF 455 (966)
T ss_pred HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh---cCcHH
Confidence 64 33 23788999999999999999999999998 8998 67799999999999999999999998875 7788
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCR 742 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~ 742 (934)
.+..+.|...|-..|++.+|++-+++. .++|| +..+..|+.+...
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 888999999999999999999999987 78887 3456566655443
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=4.3e-17 Score=181.52 Aligned_cols=295 Identities=11% Similarity=0.042 Sum_probs=173.4
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCchHHHHHHHHHHhhhCCCC---chhHHHHHHHHHHhcCCh
Q 046194 333 DQNGCYEEAIMNFCAMRRDGLMSSN-FSLISTLSSCASLGWIMLGQQIHGEGLKLGLDS---DVSVSNALLSLYADAGYL 408 (934)
Q Consensus 333 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~---~~~~~~~li~~y~~~g~~ 408 (934)
...|++++|+..|.++.+. .|+. .++..+...+...|+++.|..+++.+++.+..+ ...++..+...|.+.|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3444444555555554442 2222 233333334444444444444444444322111 123566777788888888
Q ss_pred HHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHH
Q 046194 409 SRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQV 485 (934)
Q Consensus 409 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 485 (934)
+.|..+|+++.+ .+..+++.++..+.+.|++ ++|++.++.+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW-QKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH-HHHHHHHHHHHHhcCCcchHH------------------------
Confidence 888888887764 3556777778888888887 888888888776542221110
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH
Q 046194 486 IKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT 563 (934)
Q Consensus 486 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 563 (934)
....+..+...+.+.|++++|...|+++.+. | +...+..+...|.+.|++++|.++|+++...+......+
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 0112345666777888888888888887653 3 345677777888888888888888888876532222344
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC--CCCcccccHHHHHHHH--
Q 046194 564 FATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP--VRNVYSWNSMISGYAR-- 639 (934)
Q Consensus 564 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~-- 639 (934)
+..+..++...|++++|.+.+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 5556666666666666666666665542 333444556666666666666666665543 2555555555555443
Q ss_pred -cCChHHHHHHHHHHHHCCCCCChh
Q 046194 640 -HGHGDKALTLFSQMKLDGPLPDHV 663 (934)
Q Consensus 640 -~g~~~~A~~l~~~m~~~g~~p~~~ 663 (934)
+|+.++++.+|++|.+++++|+..
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC
Confidence 345566666666666555555544
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=4.6e-17 Score=181.34 Aligned_cols=290 Identities=10% Similarity=0.068 Sum_probs=193.3
Q ss_pred HHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HhHHHHHHHHHhchhhHH
Q 046194 504 YGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD---HFTFATVLSACASVATLE 578 (934)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~ 578 (934)
+...|++++|...|.++... | +..+|..+...|...|++++|..+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34556666666666665543 3 333555566666666666666666666655322111 133455555566666666
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCc--------ccccHHHHHHHHcCChHHHHHHH
Q 046194 579 RGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNV--------YSWNSMISGYARHGHGDKALTLF 650 (934)
Q Consensus 579 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~l~ 650 (934)
.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+. ..|..+...+...|++++|+..|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665531 23455666666777777777777777766643211 13445666677788888888888
Q ss_pred HHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 046194 651 SQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGRAGELDKIEEFINKM-PI 726 (934)
Q Consensus 651 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m-~~ 726 (934)
+++.+. .|+ ...+..+...+.+.|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++ ..
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888774 344 445666667788888888888888888763 233 456777888888888888888888877 45
Q ss_pred CCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc---CCChHHHHHHHHHHHhCCCcCCCc
Q 046194 727 TPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS---GGKWEDVAKARKAMKEAEVKKEAG 802 (934)
Q Consensus 727 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 802 (934)
.|+...+..+...+... |+.+.|...++++++..|+++. +..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 279 ~p~~~~~~~la~~~~~~--g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQ--EGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67766667777788888 8888888888888888887764 4444444432 468999999999999999999996
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=2.3e-15 Score=176.67 Aligned_cols=246 Identities=11% Similarity=0.038 Sum_probs=178.2
Q ss_pred CChhHHHHHHHHHHHcC-CCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHH
Q 046194 540 ELLPKAMNLVWFMMQRG-QRLD-HFTFATVLSACASVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 540 g~~~~A~~l~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~ 616 (934)
+++++|++.|++....+ ..|+ ...+..+...+...|++++|...++.+++. .| +...+..+...|...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 45666666666666543 2232 234444445555666666666666666653 23 3445666777777888888888
Q ss_pred HHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh
Q 046194 617 RFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY 692 (934)
Q Consensus 617 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 692 (934)
..|+.... .+...|..+...|...|++++|+..|++..+. .|+ ...+..+...+.+.|++++|+..|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 88776542 34567778888888889999999999988884 565 455666777788899999999999988763
Q ss_pred CCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-------HH-HHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 693 GLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNS-------LI-WRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 693 ~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~-------~~-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
.|+ ...|..+..+|...|++++|.+.+++. .+.|+. .. ++..+..+... |++++|...++++++++
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~--~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK--QDFIEAENLCEKALIID 538 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhcC
Confidence 344 678888899999999999999998886 444421 11 12222223335 89999999999999999
Q ss_pred CCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 763 PQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 763 p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|++...+..++.+|...|++++|.+.++...+
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999888764
No 20
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.76 E-value=4.1e-14 Score=154.68 Aligned_cols=702 Identities=11% Similarity=0.005 Sum_probs=353.7
Q ss_pred HHHHHHHHhcCCCCchhhhHHHHHHhhcCChhhHHHhhccCCCC----ChhhHHHHHHHHhcCCChhhHHHHHHHHHHcC
Q 046194 6 LFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDR----NSVSWACIVSGYTHKGMSNEACKMFKEMVRAG 81 (934)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 81 (934)
.+++.+...|+.|+..||.+||..||..|+++.|. +|.-|.-+ +...++.++.+..+.++.+.|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 57889999999999999999999999999999999 88888643 4446777888888888777764
Q ss_pred CCCCcccHHHHHHHhhhcCCCChhhhhHHHHHHH-------HhcCC---------------CCchhhHHHHHHhhhCCCC
Q 046194 82 FLLNRYALGSVLRACQECGPSGFKFGMQVHCLVL-------KSNQT---------------FDGLVSNVLIAMYGSCLES 139 (934)
Q Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-------~~g~~---------------~~~~~~~~li~~y~~~~g~ 139 (934)
.|...||..|+.+|+.. ||+.....+-..+. ..|.. .-+...|..+...-+ |-
T Consensus 80 -ep~aDtyt~Ll~ayr~h--GDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~e--gl 154 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIH--GDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLE--GL 154 (1088)
T ss_pred -CCchhHHHHHHHHHHhc--cchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHH--HH
Confidence 57777888888888887 66554332222111 11110 001111222222222 44
Q ss_pred hHHHHHHhhccCCC--CcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHH
Q 046194 140 TDCARRIFEEIETR--DLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQ 217 (934)
Q Consensus 140 ~~~a~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~ 217 (934)
++.+.+++..+|.- +- ..-.+++-..... .-.+-+..|.+.++. .||+.+|..++.+....|+.+. |..
T Consensus 155 waqllkll~~~Pvsa~~~-p~~vfLrqnv~~n---tpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~--Ak~ 225 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDN---TPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDG--AKN 225 (1088)
T ss_pred HHHHHHHHhhCCcccccc-hHHHHHHHhccCC---chHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhh--HHH
Confidence 55555555555421 10 0000122222111 111222223333320 3666777777776666666666 677
Q ss_pred HHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHH
Q 046194 218 ILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGL 297 (934)
Q Consensus 218 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~l 297 (934)
++..|++.|++.+..-+..|+-+ .++...++.+++.|.+ .|+.|+..|+.-.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe-------------------------~gv~p~seT~ady 277 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQE-------------------------KGVQPGSETQADY 277 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHH-------------------------hcCCCCcchhHHH
Confidence 77777777776666666666655 5555566666555543 3555555555444
Q ss_pred HHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCCh-----hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCc
Q 046194 298 VNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCY-----EEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGW 372 (934)
Q Consensus 298 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 372 (934)
+-.+.+.|....+....+.----....+..+..+...+... .-.+..+++..-.|+......|...... ...|.
T Consensus 278 vip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk 356 (1088)
T KOG4318|consen 278 VIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGK 356 (1088)
T ss_pred HHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCC
Confidence 44444433322111111000000001111111111000010 1111111111111222222122111111 11233
Q ss_pred hHHHHHHHHHHhhhCCC---CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc-chH--H------------HHHHHH
Q 046194 373 IMLGQQIHGEGLKLGLD---SDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQV-SWN--S------------VIGAFA 434 (934)
Q Consensus 373 ~~~a~~i~~~~~~~g~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~--~------------li~~~~ 434 (934)
-+...++-+.+..--.. .++..+..++. +.|.+...+... .++ . .++-++
T Consensus 357 ~e~veqlvg~l~npt~r~s~~~V~a~~~~lr------------qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell 424 (1088)
T KOG4318|consen 357 GEEVEQLVGQLLNPTLRDSGQNVDAFGALLR------------QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELL 424 (1088)
T ss_pred CchHHHHHhhhcCCccccCcchHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHH
Confidence 33344443333221110 11112222222 222222221110 011 0 000000
Q ss_pred hCCccHHHHHHHHHHHHHcC----CC-------CCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046194 435 DSEALVSEAVKYYLDMRRAG----WS-------PNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSC 503 (934)
Q Consensus 435 ~~g~~~~~A~~l~~~m~~~g----~~-------p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 503 (934)
.+-+. ..+++-+..+.... .. |-...-..++..|++..+...+...-+.....-+. ..|..||+.
T Consensus 425 ~~lrk-ns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l 500 (1088)
T KOG4318|consen 425 ENLRK-NSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKL 500 (1088)
T ss_pred HHhCc-chHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhh
Confidence 00011 11111111110000 00 01111233445555555555554433333222222 567899999
Q ss_pred HHhcCCHHHHHHHHHhhccC-----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-HhHHHHHHHHHhchhh
Q 046194 504 YGKCGEMDDCEKIFARMSER-----RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ-RLD-HFTFATVLSACASVAT 576 (934)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~a~~~~~~ 576 (934)
+....+.+.|..+.+++..+ -|..-+..+.+...+.+....+..++.+|.+.-. .|+ ..++-.+++..+..|.
T Consensus 501 ~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agq 580 (1088)
T KOG4318|consen 501 MDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQ 580 (1088)
T ss_pred HHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccC
Confidence 99999999999999888775 2455677888888999999999999999887422 232 3556667777788888
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHH--cCChHHHHHHHH
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYAR--HGHGDKALTLFS 651 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~--~g~~~~A~~l~~ 651 (934)
.+.-+++++.+...|+.-+ .-++....+.++...|.++++...+ +.+..-..+.+.+-+ ..+++++..+-.
T Consensus 581 qe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~ 656 (1088)
T KOG4318|consen 581 QEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSI 656 (1088)
T ss_pred HHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcc
Confidence 8888898888887776542 2344455667777777777765432 111111111111110 111112211111
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhH----------HhhC-CC---------CCcccHHHHHHHHhhc
Q 046194 652 QMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMS----------QVYG-LI---------PQLEQFSCMVDLLGRA 711 (934)
Q Consensus 652 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----------~~~~-~~---------p~~~~y~~li~~l~~~ 711 (934)
. +..+.+.|.+.++.++.+.=- .+.| +. -+..+..-|+..|.+.
T Consensus 657 ~----------------iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~ 720 (1088)
T KOG4318|consen 657 P----------------IQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEE 720 (1088)
T ss_pred h----------------hHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhh
Confidence 1 111334444444333322100 0000 00 0112233478899999
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChHHHHH
Q 046194 712 GELDKIEEFINKMPITPNSLIWRTVLGACCRANC-RKTELGRKAANMLFEMEPQNAV---NYVLLANMYASGGKWEDVAK 787 (934)
Q Consensus 712 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~---~y~~l~~~~~~~g~~~~a~~ 787 (934)
|+++.|..++.++++.|+..+...|...++.++. -++-++...-+++.++.|..+. .|.-.+-+..+....+.|.+
T Consensus 721 g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk 800 (1088)
T KOG4318|consen 721 GRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKK 800 (1088)
T ss_pred hHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999998888731 2444555666677777665443 34444444444445557888
Q ss_pred HHHHHHhCCC
Q 046194 788 ARKAMKEAEV 797 (934)
Q Consensus 788 ~~~~m~~~~~ 797 (934)
.+...+++..
T Consensus 801 ~f~r~eeq~~ 810 (1088)
T KOG4318|consen 801 CFERLEEQLT 810 (1088)
T ss_pred HHHHHHHccC
Confidence 8888887743
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=5.5e-14 Score=141.41 Aligned_cols=442 Identities=14% Similarity=0.137 Sum_probs=275.2
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcccHHHHHHHhhhcCCCChhhhhH-HHHHHHHhcCCCCchhhHHH
Q 046194 51 SVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQ-VHCLVLKSNQTFDGLVSNVL 129 (934)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l 129 (934)
+++=|.|+ -....|...++.-+|+.|+..|+..+...-..|++..+-.....+..+.. -+-.+.+.| +.+..+|
T Consensus 116 V~~E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLL-KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 33445554 34567888889999999999999988887777776655442233332221 112222223 2333344
Q ss_pred HHHhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCcc
Q 046194 130 IAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVL 209 (934)
Q Consensus 130 i~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~ 209 (934)
|. |++.+ -+|+..| +...+|.+||.|+|+--..+.|.+++++-+...+ +.+..+||.+|.+.+-+.
T Consensus 191 -----K~-G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~----kv~~~aFN~lI~~~S~~~- 256 (625)
T KOG4422|consen 191 -----KS-GAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKG----KVYREAFNGLIGASSYSV- 256 (625)
T ss_pred -----cc-ccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh----eeeHHhhhhhhhHHHhhc-
Confidence 22 65544 5566655 4556899999999999999999999999988877 899999999998865443
Q ss_pred ccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCC
Q 046194 210 SGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFD 289 (934)
Q Consensus 210 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~ 289 (934)
.++++.+|.+..+.||..|+|++++...+.|+++.|.+.+ .++.+.+...|+.|
T Consensus 257 -----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa---------------------lqil~EmKeiGVeP 310 (625)
T KOG4422|consen 257 -----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA---------------------LQILGEMKEIGVEP 310 (625)
T ss_pred -----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH---------------------HHHHHHHHHhCCCc
Confidence 5788999999999999999999999999999999988763 44556677789999
Q ss_pred chhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC----ChhhHHHHHH
Q 046194 290 MVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMS----SNFSLISTLS 365 (934)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~ 365 (934)
...+|.-+|..+.+.++..+.. .+|- .++.+.+-.+.++| |...|...++
T Consensus 311 sLsSyh~iik~f~re~dp~k~a-----------s~~i---------------~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVA-----------SSWI---------------NDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred chhhHHHHHHHhcccCCchhhh-----------HHHH---------------HHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 8888888888776666554310 0110 11222222222333 4566888899
Q ss_pred HhhccCchHHHHHHHHHHhhhC----CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHH
Q 046194 366 SCASLGWIMLGQQIHGEGLKLG----LDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVS 441 (934)
Q Consensus 366 a~~~~~~~~~a~~i~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 441 (934)
.|.+..+.+.|.++++.+.... +.|+.. ...-|.-+....++.... +
T Consensus 365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~----------------------------~~fYyr~~~~licq~es~-~ 415 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH----------------------------RNFYYRKFFDLICQMESI-D 415 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------------------HHHHHHHHHHHHHHHHHH-H
Confidence 9999999999999998765321 112110 011122333444444444 6
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC-CH--------H-
Q 046194 442 EAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCG-EM--------D- 511 (934)
Q Consensus 442 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g-~~--------~- 511 (934)
.-+..|..|.-.-+-|+..+...+++|....+.++...+++..++..|...+....--++...++.. .. .
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~ 495 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQV 495 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 6677777777666777777777777777777777777777777777665444433333333333322 00 0
Q ss_pred ----HHHHHHHhh-------ccC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCHhHHHHHHHHHhchh
Q 046194 512 ----DCEKIFARM-------SER-RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ----RLDHFTFATVLSACASVA 575 (934)
Q Consensus 512 ----~A~~~~~~~-------~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a~~~~~ 575 (934)
-|..+++.. ..+ -.....+.+.-.+.+.|..++|.++|..+.+.+- .|......-++.+....+
T Consensus 496 ~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 496 AFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 011111111 111 1233344455556666777777776666644331 222333334445555555
Q ss_pred hHHHHHHHHHHHHHhCC
Q 046194 576 TLERGMEVHACGVRACL 592 (934)
Q Consensus 576 ~~~~a~~i~~~~~~~~~ 592 (934)
+..+|...++.+...++
T Consensus 576 spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 576 SPSQAIEVLQLASAFNL 592 (625)
T ss_pred CHHHHHHHHHHHHHcCc
Confidence 66666666666655443
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=1.1e-14 Score=170.10 Aligned_cols=352 Identities=10% Similarity=-0.010 Sum_probs=268.7
Q ss_pred HhcCChHHHHHHHhhCCCC------CccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCch
Q 046194 403 ADAGYLSRCLKVFFLMPEH------DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGK 476 (934)
Q Consensus 403 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 476 (934)
.+..+++.-.-.|...+++ +..-...++..+.+.|+. ++|+.+++........+.. .+..+..++...|+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDET-DVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCc-chhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHH
Confidence 3455666655666655542 233445567788888999 9999999988876544433 3444446666789999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046194 477 LGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQ 554 (934)
Q Consensus 477 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 554 (934)
.|.+.+..+.+.. +.+...+..+...+.+.|++++|...|++.... | +...|..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999988764 234556778888999999999999999988773 4 566788889999999999999999998876
Q ss_pred cCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCccccc
Q 046194 555 RGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWN 631 (934)
Q Consensus 555 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~ 631 (934)
....+.. .+.. +..+...|++++|...+..+.+....++......+...+.+.|++++|...|+.... .+...+.
T Consensus 173 ~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 EVPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred hCCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 5332222 2222 334778899999999999887764334444555667788899999999999998763 3455788
Q ss_pred HHHHHHHHcCChHH----HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHH
Q 046194 632 SMISGYARHGHGDK----ALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMV 705 (934)
Q Consensus 632 ~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li 705 (934)
.+...|...|++++ |+..|++..+ ..|+ ...+..+...+...|++++|...++...+ ..|+ ...+..+.
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La 325 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 88999999999985 8999999988 4566 55678888889999999999999999876 3455 56677889
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 706 DLLGRAGELDKIEEFINKM-PITPNSLIWRT-VLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~-ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
.+|.+.|++++|.+.++++ ...|+...+.. +..++... |+.+.|...++++++..|++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~--G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA--GKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999987 46676555443 45566777 999999999999999999864
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=3.4e-14 Score=169.72 Aligned_cols=357 Identities=10% Similarity=0.029 Sum_probs=219.0
Q ss_pred hHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046194 426 WNSVIGAFADSEALVSEAVKYYLDMRRAGWSPN-GVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCY 504 (934)
Q Consensus 426 ~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 504 (934)
+..+...+.+.|+. ++|.++|++..+. .|+ ......+...+...|+.++|...++.+++.. +.+.. +..+..++
T Consensus 52 ~~~lA~~~~~~g~~-~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l 126 (765)
T PRK10049 52 YAAVAVAYRNLKQW-QNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVY 126 (765)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHH
Confidence 44444444444444 4444444444332 121 2222333334444444444444444444431 22222 44555556
Q ss_pred HhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------hHHHHHHHHH-----
Q 046194 505 GKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH------FTFATVLSAC----- 571 (934)
Q Consensus 505 ~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~----- 571 (934)
...|+.++|...++++... | +...+..+...+...+..++|++.++.... .|+. ......+...
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc
Confidence 6666666666666665553 3 333344455555556666666665554332 2221 0011111111
Q ss_pred hchhhH---HHHHHHHHHHHHh-CCCCcHh--HHHH---HHHHHHhcCCHHHHHHHhccCCCCC--ccc--ccHHHHHHH
Q 046194 572 ASVATL---ERGMEVHACGVRA-CLEFDVV--IGSA---LVDMYSKCGRIDYASRFFDLMPVRN--VYS--WNSMISGYA 638 (934)
Q Consensus 572 ~~~~~~---~~a~~i~~~~~~~-~~~~~~~--~~~~---li~~y~~~g~~~~A~~~~~~~~~~~--~~~--~~~li~~~~ 638 (934)
...+.+ +.|.+.++.+.+. ...|+.. ...+ .+.++...|++++|...|+.+...+ ... -..+...|.
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl 283 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL 283 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 122233 5666667666653 2222221 1111 1223456689999999999887532 111 122567888
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhC----------CCCC---ccc
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPDH-----VTFVGVLSACSHAGLVDEGFKHFKSMSQVYG----------LIPQ---LEQ 700 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~ 700 (934)
..|++++|+..|+++.+. .|.. .....+..++...|++++|.++++.+.+... -.|+ ...
T Consensus 284 ~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 284 KLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred hcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 999999999999998764 3332 3355566678899999999999998876311 0122 224
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
+..+..++...|++++|++.++++ ...| +...+..+...+... |+.+.|+..++++++++|+++..+..++.++..
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~--g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR--GWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 556788999999999999999997 4444 467888899998888 999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHh
Q 046194 779 GGKWEDVAKARKAMKE 794 (934)
Q Consensus 779 ~g~~~~a~~~~~~m~~ 794 (934)
.|+|++|.++++.+.+
T Consensus 440 ~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 440 LQEWRQMDVLTDDVVA 455 (765)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 9999999999988875
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.6e-13 Score=138.22 Aligned_cols=440 Identities=12% Similarity=0.054 Sum_probs=290.9
Q ss_pred eHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHH---HHHHHhhhc---ccchhhhhh
Q 046194 196 TFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYAR---KIFEQMIQK---NVVSMNGLM 269 (934)
Q Consensus 196 t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~---~l~~~m~~~---~~~~~~~~l 269 (934)
|=+.+++- .+.+.+.. +.-+++.|.+.|++.+..+.-.|++.-+-.+.-+... +-|-.|... ...+|
T Consensus 118 ~E~nL~km-IS~~EvKD--s~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKD--SCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred chhHHHHH-Hhhcccch--hHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 44444443 34455555 7788888888888877777666665544333222211 122222211 11122
Q ss_pred hhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 046194 270 EGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMR 349 (934)
Q Consensus 270 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 349 (934)
|.|.+.+ ++-+...+...++..||.|+++--+.+.|.++|++-.
T Consensus 191 ---------------------------------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~ 234 (625)
T KOG4422|consen 191 ---------------------------------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHR 234 (625)
T ss_pred ---------------------------------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455444 4444455567899999999999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHH
Q 046194 350 RDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSV 429 (934)
Q Consensus 350 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 429 (934)
....+.+..+|+.+|.+.+-. .++.+..+|+...+.||..++|+++...++.|+++.|.
T Consensus 235 ~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar----------------- 293 (625)
T KOG4422|consen 235 AAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR----------------- 293 (625)
T ss_pred HhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH-----------------
Confidence 998999999999999876543 34889999999999999999999999999999998876
Q ss_pred HHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchH-HHHHHHHHHH----hcCC----CchhHHHHH
Q 046194 430 IGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKL-GHQVHAQVIK----YNVA----NETTIENAL 500 (934)
Q Consensus 430 i~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~-a~~i~~~~~~----~g~~----~~~~~~~~l 500 (934)
..|++++.+|++-|+.|...+|..+|..+++.++... +..+...+.. ..+. .|...+..-
T Consensus 294 -----------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 294 -----------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred -----------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 7888899999999999999999999998888877643 4444444433 2222 244556667
Q ss_pred HHHHHhcCCHHHHHHHHHhhccC-------CC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046194 501 LSCYGKCGEMDDCEKIFARMSER-------RD---EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSA 570 (934)
Q Consensus 501 i~~~~~~g~~~~A~~~~~~~~~~-------p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 570 (934)
++.|.+..+.+-|.++-.-+... |+ .+-|..+....|+....+.-+.+|+.|.-.-+-|+..+...+++|
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 77777888888888877665542 22 223556777788888899999999999888888999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHc--CChHHHHH
Q 046194 571 CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARH--GHGDKALT 648 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~ 648 (934)
....+.++-..+++..++..|.........-+...+++.. +.|+...-..+-...++. .-.+....
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred HhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888775544333322222222221 122212111111111110 11112222
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHH---HHhhcCChHHHHHHHHhC
Q 046194 649 LFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVD---LLGRAGELDKIEEFINKM 724 (934)
Q Consensus 649 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~---~l~~~g~~~~A~~~~~~m 724 (934)
.-.+|.+....|. ..+.++-.+.+.|..++|.++|..+.+.++-.|-....++|+. .-.+......|...++-|
T Consensus 511 ~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 511 QPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hHHHHHhccCChh--HHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2334555444443 3445555577888888888888888665555566555665443 333444555555555544
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=5.3e-14 Score=168.09 Aligned_cols=366 Identities=9% Similarity=-0.030 Sum_probs=236.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC---CCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 046194 394 VSNALLSLYADAGYLSRCLKVFFLMP---EHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAAS 470 (934)
Q Consensus 394 ~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 470 (934)
.+..+...+.+.|++++|..+|++.. ..+...+..+...+...|+. ++|+..+++..+. .|+...+..+..++.
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~-~eA~~~l~~~l~~--~P~~~~~~~la~~l~ 127 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY-DEALVKAKQLVSG--APDKANLLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34455555555555555555555532 12333444555555555555 6666666655543 222211444555555
Q ss_pred ccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc------chHHHHHHHHH-----hc
Q 046194 471 SFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDE------VSWNSMISGYI-----HN 539 (934)
Q Consensus 471 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~------~~~~~li~~~~-----~~ 539 (934)
..|+.+.|...+..+.+.... +...+..+..++.+.|..++|.+.++.....|+. .....++..+. ..
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 566666666666666554332 3334455677777788888888888877664431 01112222221 12
Q ss_pred CCh---hHHHHHHHHHHHc-CCCCCHh-HHH----HHHHHHhchhhHHHHHHHHHHHHHhCCC-CcHhHHHHHHHHHHhc
Q 046194 540 ELL---PKAMNLVWFMMQR-GQRLDHF-TFA----TVLSACASVATLERGMEVHACGVRACLE-FDVVIGSALVDMYSKC 609 (934)
Q Consensus 540 g~~---~~A~~l~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~~~ 609 (934)
+++ ++|++.++.+... ...|+.. .+. ..+.++...++.++|...++.+.+.+.+ |+- ....+...|...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhc
Confidence 233 6788888888754 2233321 111 1134455678899999999998886532 322 222257789999
Q ss_pred CCHHHHHHHhccCCCCCc-------ccccHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCh---hhHHHH
Q 046194 610 GRIDYASRFFDLMPVRNV-------YSWNSMISGYARHGHGDKALTLFSQMKLDGP-----------LPDH---VTFVGV 668 (934)
Q Consensus 610 g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~~---~t~~~l 668 (934)
|++++|...|+.+...+. ..+..+..++...|++++|+++++++.+... .|+. ..+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 999999999998754221 2344566678899999999999999987521 1232 123455
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCC
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCR 746 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~ 746 (934)
...+...|+.++|++.++++... .+.+...+..+..++...|+.++|++.+++. ...|+ ...+..+....... |
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~--~ 441 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL--Q 441 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--C
Confidence 66788999999999999999873 3334788899999999999999999999988 66776 45566666666667 9
Q ss_pred CcHHHHHHHHHHHhcCCCCCch
Q 046194 747 KTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 747 ~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
+++.|+..++.+++..|+++..
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999754
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=4.9e-13 Score=148.47 Aligned_cols=462 Identities=12% Similarity=0.028 Sum_probs=316.5
Q ss_pred hhHHHHHHhcC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHhhccCchHHHHHHHH
Q 046194 307 IDDSRSVFRFM---IGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLM--SSNFSLISTLSSCASLGWIMLGQQIHG 381 (934)
Q Consensus 307 ~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~~~~~~a~~i~~ 381 (934)
+..+..++... ...|++..|.|..-|.-.|++..++.+...+...... .-...|-.+-+++-..|+++.|...+-
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444444433 2237778888888888889999999988888764311 112346677788888899999999888
Q ss_pred HHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CccchHHHHHHHHhCCcc---HHHHHHHHHHHHHcCC
Q 046194 382 EGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE--H-DQVSWNSVIGAFADSEAL---VSEAVKYYLDMRRAGW 455 (934)
Q Consensus 382 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~---~~~A~~l~~~m~~~g~ 455 (934)
...+..-...+..+-.|..+|.+.|+++.+...|+.+.. | +..+...+...|+..+.. .+.|..++.+..+.-
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 877754333234455678899999999999999988764 2 345555666666666422 145555554444332
Q ss_pred CCCcccHHHHHHHHhccCCchHHHHHHHH----HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC------CC
Q 046194 456 SPNGVTFINILAAASSFSMGKLGHQVHAQ----VIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER------RD 525 (934)
Q Consensus 456 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------p~ 525 (934)
+.|...|..+-..+-. ++.......+.. +...+-.+.+.+.|.+...+...|.+++|...|++...+ +|
T Consensus 411 ~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 3334455444444433 333333555443 445666678888899999999999999999999887653 23
Q ss_pred cc------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhH
Q 046194 526 EV------SWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT-FATVLSACASVATLERGMEVHACGVRACLEFDVVI 598 (934)
Q Consensus 526 ~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 598 (934)
.. +-..+...+-..++.+.|.+.|...... .|+-+. |.-+.......+...+|...+..+... ...++..
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~a 566 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNA 566 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHH
Confidence 31 1223444555677899999999998875 454332 222222222335666777777766653 2335556
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCC-----CCCcccccHHHHHHHH------------cCChHHHHHHHHHHHHCCCCCC
Q 046194 599 GSALVDMYSKCGRIDYASRFFDLMP-----VRNVYSWNSMISGYAR------------HGHGDKALTLFSQMKLDGPLPD 661 (934)
Q Consensus 599 ~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~p~ 661 (934)
.+.+.+.|.+...+..|.+-|..+. .+|..+.-+|.+.|.+ .+..++|+++|.+.++.. +-|
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN 645 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKN 645 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cch
Confidence 6667778888888888888555443 2344444444444432 345788999999998853 334
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHH
Q 046194 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM----PITPNSLIWRTVL 737 (934)
Q Consensus 662 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll 737 (934)
...-+.+...+++.|.+.+|..+|.+..+. ..-...+|-.+..+|..+|++-.|+++|+.. .-+.+..+.+.|.
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 566667777789999999999999999885 3345678889999999999999999999876 3345788899999
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
.++... |.+.++..++..+..+.|.|+..-..++-+..+
T Consensus 724 ra~y~~--~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 724 RAWYEA--GKLQEAKEALLKARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHh--hhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence 999999 999999999999999999999877766665443
No 27
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.71 E-value=2.3e-13 Score=148.92 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=48.9
Q ss_pred CCchhHHHHHHHHhhccCChhHHHHHHhcCCCCC----c-ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 046194 288 FDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKD----S-VSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLIS 362 (934)
Q Consensus 288 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~----~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 362 (934)
.+++.++..+++.-.-.|+++-|..++.+|.++. . .-|-.++. .++...+..+++-|++.|+.|+..|+..
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 4666666666666666677777777766665542 2 22333322 5566666666666666677777777666
Q ss_pred HHHHhhccCc
Q 046194 363 TLSSCASLGW 372 (934)
Q Consensus 363 ll~a~~~~~~ 372 (934)
-+-.|.+.|.
T Consensus 277 yvip~l~N~~ 286 (1088)
T KOG4318|consen 277 YVIPQLSNGQ 286 (1088)
T ss_pred HHHhhhcchh
Confidence 6666655443
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.69 E-value=4.1e-14 Score=165.26 Aligned_cols=327 Identities=10% Similarity=-0.007 Sum_probs=266.0
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHH
Q 046194 458 NGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISG 535 (934)
Q Consensus 458 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~ 535 (934)
+......++..+.+.|+.+.|..++..++.....+....+. ++......|++++|...|+++... | +...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34456677888899999999999999998877665544444 445666799999999999999774 5 56678888899
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 046194 536 YIHNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDY 614 (934)
Q Consensus 536 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 614 (934)
+.+.|++++|+..|++.... .|+ ...+..+..++...|+.++|...+..+......+.. .+..+ ..+...|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHH
Confidence 99999999999999999874 454 567778888999999999999999988775443332 33333 34788999999
Q ss_pred HHHHhccCCCCC----cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHH----HHHHH
Q 046194 615 ASRFFDLMPVRN----VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDE----GFKHF 685 (934)
Q Consensus 615 A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~ 685 (934)
|...++.+...+ ...+..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++ |...|
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 999999876432 233445567888999999999999999985 455 5567778888999999986 89999
Q ss_pred HHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 686 KSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 686 ~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
+...+ +.|+ ...+..+...|.+.|++++|...+++. ...|+ ..++..+...+... |+.+.|...++++.+.+
T Consensus 274 ~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~--G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 274 RHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV--GQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhC
Confidence 99876 4565 778899999999999999999999987 55665 55677788888888 99999999999999999
Q ss_pred CCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 046194 763 PQNAVNYVLLANMYASGGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 763 p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 796 (934)
|+++..+..++.+|...|++++|.+.++...+..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9988777788999999999999999998876543
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.69 E-value=2.5e-13 Score=159.42 Aligned_cols=248 Identities=10% Similarity=0.029 Sum_probs=149.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 046194 528 SWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMY 606 (934)
Q Consensus 528 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 606 (934)
.|+.+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444444444455555555555554432 232 2344444444445555555555555544432 12455566666677
Q ss_pred HhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHH
Q 046194 607 SKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGF 682 (934)
Q Consensus 607 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 682 (934)
...|++++|...|+.... | +...|..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|+
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHH
Confidence 777777777777776542 2 3445666777777788888888888887763 454 456677777788888888888
Q ss_pred HHHHHhHHhhCCCCCc-cc-------HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHH
Q 046194 683 KHFKSMSQVYGLIPQL-EQ-------FSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGR 752 (934)
Q Consensus 683 ~~~~~m~~~~~~~p~~-~~-------y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~ 752 (934)
+.|+...+ +.|+. .. ++.....+...|++++|.+++++. .+.|+ ...+..+...+... |++++|.
T Consensus 488 ~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~--g~~~eAi 562 (615)
T TIGR00990 488 EKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ--GDVDEAL 562 (615)
T ss_pred HHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--cCHHHHH
Confidence 88887765 33331 11 111122333468888888888875 55554 44677788888888 8888888
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 753 KAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 753 ~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
..++++.++.+.....+ ....|.+|.++....+
T Consensus 563 ~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 563 KLFERAAELARTEGELV--------QAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHH
Confidence 88888888877643322 1223556666544444
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=7.6e-13 Score=154.62 Aligned_cols=433 Identities=8% Similarity=0.016 Sum_probs=256.2
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChH
Q 046194 331 GLDQNGCYEEAIMNFCAMRRDGLMSSNF-SLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLS 409 (934)
Q Consensus 331 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 409 (934)
...++|+++.|++.|++..+. .|+.. ....++..+...|+.++|...++..+. .-+.......++...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 357889999999999999873 45542 222566666666777777777777661 11122223333355666777777
Q ss_pred HHHHHHhhCCCC---CccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHH
Q 046194 410 RCLKVFFLMPEH---DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVI 486 (934)
Q Consensus 410 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 486 (934)
+|..+|+++.+. |...+..++..|.+.++. ++|++.++++... .|+...+..+.......++...+.+.++.++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~-~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRG-GVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777776542 344555666667777777 7777777776543 3444444333333333344434556666655
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHH
Q 046194 487 KYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFAT 566 (934)
Q Consensus 487 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 566 (934)
+.. +.+...+..++....+.|-...|.++..+-+.--+...+.-+- .+.| -++++.+..|+.
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~--------~~~~----a~~vr~a~~~~~----- 258 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE--------RDAA----AEQVRMAVLPTR----- 258 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH--------HHHH----HHHHhhcccccc-----
Confidence 553 3344444555555566666655555544433210111110000 0000 011111111100
Q ss_pred HHHHHhchh---hHHHHHHHHHHHHHh-CCCC-cHhH-HHH---HHHHHHhcCCHHHHHHHhccCCCCC--cc--cccHH
Q 046194 567 VLSACASVA---TLERGMEVHACGVRA-CLEF-DVVI-GSA---LVDMYSKCGRIDYASRFFDLMPVRN--VY--SWNSM 633 (934)
Q Consensus 567 ll~a~~~~~---~~~~a~~i~~~~~~~-~~~~-~~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~~--~~--~~~~l 633 (934)
.... -.+.|..-++.+... +-.| .... ..+ .+-++.+.|++.++++.|+.+..+. +. +-..+
T Consensus 259 -----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 259 -----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred -----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 0011 123333334433331 1112 1111 222 3335567788888888888887432 22 34457
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC----CC-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhC----------CCCC-
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGP----LP-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYG----------LIPQ- 697 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~----~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~- 697 (934)
..+|...+++++|+.+|+++....- .| +......|.-++...+++++|..+++.+.+... -.|+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 7788888888888888888765421 12 222245677788888888888888888876211 0122
Q ss_pred --cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHH
Q 046194 698 --LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLA 773 (934)
Q Consensus 698 --~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~ 773 (934)
...+..++..+.-.|++.+|++.++++ ...| |..++..+...++.. |+...|+..++.+..++|++...+..++
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R--g~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR--DLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 334555677788888889988888888 3444 677788888888888 8888888888888888888888888888
Q ss_pred HHHHcCCChHHHHHHHHHHHh
Q 046194 774 NMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 774 ~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+...|+|.+|.++.+.+.+
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHh
Confidence 888888999888888766654
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=7.2e-12 Score=146.54 Aligned_cols=438 Identities=11% Similarity=0.040 Sum_probs=283.1
Q ss_pred HhhccCChhHHHHHHhcCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH---HHHhhccCch
Q 046194 300 MYAKCGTIDDSRSVFRFMIGKDSV---SWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLIST---LSSCASLGWI 373 (934)
Q Consensus 300 ~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~ 373 (934)
...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 466899999999999998764333 23488888889999999999999987 4544444333 3466678999
Q ss_pred HHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHh--CCccHHHHHHHHHHHH
Q 046194 374 MLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFAD--SEALVSEAVKYYLDMR 451 (934)
Q Consensus 374 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~~A~~l~~~m~ 451 (934)
+.|.++++.+++.... +..++..++..|...++.++|+..++++...+......+..+|.. .++. .+|++.++++.
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~-~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRN-YDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchH-HHHHHHHHHHH
Confidence 9999999999987643 356677889999999999999999999987544433334445544 4555 57999999999
Q ss_pred HcCCCCC-cccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHH
Q 046194 452 RAGWSPN-GVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWN 530 (934)
Q Consensus 452 ~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 530 (934)
+. .|+ ...+..+..+..+.|-...|.++...-... +.+....+ ++ .+.|.+....-...+...
T Consensus 197 ~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~---l~-------~~~~a~~vr~a~~~~~~~--- 260 (822)
T PRK14574 197 RL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ---LE-------RDAAAEQVRMAVLPTRSE--- 260 (822)
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH---HH-------HHHHHHHHhhcccccccc---
Confidence 86 354 455677788888888888888766542110 11111000 00 011111111100000000
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc-CCCCCH-h----HHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 531 SMISGYIHNELLPKAMNLVWFMMQR-GQRLDH-F----TFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 531 ~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
-. +---.+.|+.-++.+... +-.|.. . ...--+-++...++..++.+.++.+...+.+....+--++.+
T Consensus 261 --~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 261 --TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred --hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 00 000123344444444331 111211 1 111223345555666666666666666555544556666677
Q ss_pred HHHhcCCHHHHHHHhccCCCCC---------cccccHHHHHHHHcCChHHHHHHHHHHHHCC-------------CCCCh
Q 046194 605 MYSKCGRIDYASRFFDLMPVRN---------VYSWNSMISGYARHGHGDKALTLFSQMKLDG-------------PLPDH 662 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~ 662 (934)
+|...+++++|..++..+..++ ......|.-+|...+++++|..+++++.+.- ..||-
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 7777777777777776653211 1123456667777777777777777776621 12332
Q ss_pred hh-HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH
Q 046194 663 VT-FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNS-LIWRTVLGA 739 (934)
Q Consensus 663 ~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~ 739 (934)
.. +..++..+...|+..+|++.++.+... -+-|......+.+++...|+..+|++.++.. ...|+. .+...+..+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 22 344556688999999999999999763 4455888999999999999999999999776 567764 455566666
Q ss_pred HHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 740 CCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 740 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
.... +++.+|+...+.+.+..|+++..
T Consensus 494 al~l--~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 494 AMAL--QEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHhh--hhHHHHHHHHHHHHhhCCCchhH
Confidence 6666 99999999999999999999754
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=9.2e-10 Score=117.27 Aligned_cols=462 Identities=12% Similarity=0.080 Sum_probs=331.2
Q ss_pred HHhhccCChhHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHH----HHHCCCCCChhhHHHHHHHhhccC
Q 046194 299 NMYAKCGTIDDSRSVFRFMIG---KDSVSWNTMISGLDQNGCYEEAIMNFCA----MRRDGLMSSNFSLISTLSSCASLG 371 (934)
Q Consensus 299 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~a~~~~~ 371 (934)
-+|++..-++.|.++++...+ .+...|-+-...=-.+|+.+....+..+ +...|+..+...|..=..+|-..|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 455666677888888776643 4777887777767788888887777654 566788888888888888888888
Q ss_pred chHHHHHHHHHHhhhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHH
Q 046194 372 WIMLGQQIHGEGLKLGLDSD--VSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKY 446 (934)
Q Consensus 372 ~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l 446 (934)
..-....|....+..|++.. ..++..-.+.+.+.+.++-|..+|....+ .+...|...+..--..|.. ++...+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~-Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTR-ESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcH-HHHHHH
Confidence 88888888888877776543 34666666777777777777777765543 2444555555444444555 555555
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-
Q 046194 447 YLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R- 524 (934)
Q Consensus 447 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p- 524 (934)
|++.... - +-....|-....-+-..|++..|+.++++.-+. |
T Consensus 573 lqkav~~-----------------------------------~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 573 LQKAVEQ-----------------------------------C-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHh-----------------------------------C-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 5555543 1 112223333444555677777777777776553 3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
+...|-+-+..-..+..+++|..+|.+... ..|+...|.--+..---++..++|+++++..++. ++.-...|..+..
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 455677777777788888888888877765 4566666655555555677788888888777764 3334566777788
Q ss_pred HHHhcCCHHHHHHHhccCCC--CC-cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 605 MYSKCGRIDYASRFFDLMPV--RN-VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
.+-..++++.|...|..-.+ |+ +..|-.|...--+.|+.-+|..+|++..-++ +-|...|...|..=.+.|..+.|
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHH
Confidence 88888888888888876553 44 3477777777778888999999999888764 33467788888888899999999
Q ss_pred HHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
..+..+..++ .+.+...|.--|.+..+.++-..+.+.+++.. .|+.+.-+....+... ..++.|..-++++.+.
T Consensus 773 ~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e--~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 773 ELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSE--KKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHH--HHHHHHHHHHHHHHcc
Confidence 9888888774 55557778888888888888777777777764 4455555666666666 7889999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeC
Q 046194 762 EPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMK 809 (934)
Q Consensus 762 ~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 809 (934)
+|++...+..+-.-+...|.-++-.++++..... .|.-|..|+.+.
T Consensus 847 d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 847 DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 9999999999999999999988888888877653 345566676553
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=1.5e-10 Score=128.42 Aligned_cols=518 Identities=12% Similarity=0.096 Sum_probs=346.2
Q ss_pred hcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcC---CC
Q 046194 243 RLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFM---IG 319 (934)
Q Consensus 243 ~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~ 319 (934)
..|++++|++++.++...|+ .+...|.+|-..|-..|+++++...+-.. .+
T Consensus 151 arg~~eeA~~i~~EvIkqdp--------------------------~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p 204 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP--------------------------RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP 204 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc--------------------------cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 34999999999999877653 23445667777888888888887766433 33
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHH-
Q 046194 320 KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSN-FSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNA- 397 (934)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~- 397 (934)
.|..-|-.+-.-..+.|.+++|.-.|.+..+. .|+. ..+--=...|-+.|+...|..-+..+.....+.|..-...
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 46677888888788888888888888888764 3333 3333344556677888888887777777654333333333
Q ss_pred ---HHHHHHhcCChHHHHHHHhhCCC--C---CccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCC------------
Q 046194 398 ---LLSLYADAGYLSRCLKVFFLMPE--H---DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSP------------ 457 (934)
Q Consensus 398 ---li~~y~~~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p------------ 457 (934)
.+..|...++-+.|.+.++.... . +....|.++..|.+...+ +.|......+......+
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~-d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQS-DKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHH-HHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 34556666777888887776654 2 344677888888888888 88888888877621111
Q ss_pred ----------CcccH----HHHHHHHhccCCchHHHHHHHHHHHhc--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 046194 458 ----------NGVTF----INILAAASSFSMGKLGHQVHAQVIKYN--VANETTIENALLSCYGKCGEMDDCEKIFARMS 521 (934)
Q Consensus 458 ----------~~~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 521 (934)
+...| .-++-+..+....+....+...+.+.. +..+...+.-+.++|...|++.+|.++|..+.
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred ccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 11111 123334456666777777777777777 44456788899999999999999999999998
Q ss_pred cCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhchhhHHHHHHHHHHH--------HH
Q 046194 522 ERR---DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH-FTFATVLSACASVATLERGMEVHACG--------VR 589 (934)
Q Consensus 522 ~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~--------~~ 589 (934)
..| +...|--+..+|...|.+++|.+.|...+.. .|+. -.-.++-..+.+.|+.++|.+.+..+ ..
T Consensus 442 ~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 442 NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 863 6778999999999999999999999999874 4543 34445555677899999999998884 33
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---------C-----------------CcccccHHHHHHHHcCCh
Q 046194 590 ACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---------R-----------------NVYSWNSMISGYARHGHG 643 (934)
Q Consensus 590 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~-----------------~~~~~~~li~~~~~~g~~ 643 (934)
.+..|+....--..+.|.+.|+.++=..+-..|.. | +...--.++.+-.+.++.
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 599 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDD 599 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCch
Confidence 45666777777788889999998774444333321 0 111122233333333332
Q ss_pred HHHHHH------HHHHHHCCCCCCh--hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc----cHHHHHHHHhhc
Q 046194 644 DKALTL------FSQMKLDGPLPDH--VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE----QFSCMVDLLGRA 711 (934)
Q Consensus 644 ~~A~~l------~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~y~~li~~l~~~ 711 (934)
....+- +.--...|+.-+. ..|.-++.++.+.+.+++|..+...+...+-+.-+.. .-.+++.+....
T Consensus 600 ~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~ 679 (895)
T KOG2076|consen 600 NVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYA 679 (895)
T ss_pred HHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhc
Confidence 221111 1111122233332 2355666778889999999999888877544333322 334566677788
Q ss_pred CChHHHHHHHHhC----C--CCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC-CchHHHHHHHHHcCCChH
Q 046194 712 GELDKIEEFINKM----P--ITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN-AVNYVLLANMYASGGKWE 783 (934)
Q Consensus 712 g~~~~A~~~~~~m----~--~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~y~~l~~~~~~~g~~~ 783 (934)
+++.+|.+.++.| + ..|. ...|+..++....+ ++-.--.+....+....|++ +..+...+..+...+.|.
T Consensus 680 ~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~--~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~ 757 (895)
T KOG2076|consen 680 RDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKY--GQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFK 757 (895)
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchH
Confidence 9999999988887 1 1333 33577666677777 66666666666777777777 666777888888899999
Q ss_pred HHHHHHHHHH
Q 046194 784 DVAKARKAMK 793 (934)
Q Consensus 784 ~a~~~~~~m~ 793 (934)
.|...+-..-
T Consensus 758 ~Al~~y~ra~ 767 (895)
T KOG2076|consen 758 HALQEYMRAF 767 (895)
T ss_pred HHHHHHHHHH
Confidence 9988655443
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=9.7e-10 Score=122.07 Aligned_cols=613 Identities=12% Similarity=0.123 Sum_probs=391.1
Q ss_pred CChHHHHHHhhccCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchH
Q 046194 138 ESTDCARRIFEEIET---RDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYL 214 (934)
Q Consensus 138 g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~ 214 (934)
|+.+.|.+++.++.+ ++...|-+|-..|-+.|+.++++..+-..-... +-|.--|..+-.-....|.+..
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-----p~d~e~W~~ladls~~~~~i~q-- 225 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-----PKDYELWKRLADLSEQLGNINQ-- 225 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcccHHH--
Confidence 999999999988875 355679999999999999999987765443332 2344556666666667777777
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhccc-chhhhhhhhhhhhhHHHHHHHHHcCCCchhH
Q 046194 215 LQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNV-VSMNGLMEGRRKGKEVHGYLIRSGLFDMVAV 293 (934)
Q Consensus 215 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 293 (934)
|.-.+....+.. +++...+-.-...|-+.|+...|..-|.++.+.++ +.|. .+++.+
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e----------r~~d~i----------- 283 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE----------RIEDLI----------- 283 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH----------HHHHHH-----------
Confidence 777777777765 34455556677888899999999998888876543 2221 122111
Q ss_pred HHHHHHHhhccCChhHHHHHHhcCCC--C---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh---------
Q 046194 294 GNGLVNMYAKCGTIDDSRSVFRFMIG--K---DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFS--------- 359 (934)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------- 359 (934)
-..+..|...++-+.|.+.++.... . +...+|.++..|.....++.|+.....+......+|..-
T Consensus 284 -~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 284 -RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred -HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 1223455556666777777766644 2 445688888999999999999988888876222222211
Q ss_pred -------------H----HHHHHHhhccCchHHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 046194 360 -------------L----ISTLSSCASLGWIMLGQQIHGEGLKLG--LDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE 420 (934)
Q Consensus 360 -------------~----~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 420 (934)
| .-+.-+..+....+....+...+.+.. +.-++..+.-+.++|...|++.+|..+|..+..
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 1 122334456666677777777777777 444667888999999999999999999999875
Q ss_pred ----CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhccCCchHHHHHHHHHH--------H
Q 046194 421 ----HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGV-TFINILAAASSFSMGKLGHQVHAQVI--------K 487 (934)
Q Consensus 421 ----~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~--------~ 487 (934)
.+...|--+...|...|.. ++|++.|...+.. .|+.. .-.+|-..+...|+.++|.+.+..+. .
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~-e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEY-EEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhH-HHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 3667899999999999999 9999999998864 34433 23345556678899999999888743 2
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--------C-----------------CcchHHHHHHHHHhcCCh
Q 046194 488 YNVANETTIENALLSCYGKCGEMDDCEKIFARMSER--------R-----------------DEVSWNSMISGYIHNELL 542 (934)
Q Consensus 488 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------p-----------------~~~~~~~li~~~~~~g~~ 542 (934)
.+..|+..+.--..+.|.+.|+.++-..+-..|... | ....--.++.+-.+.++.
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 599 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDD 599 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCch
Confidence 344566666666778888888877644433333220 0 111222233333333332
Q ss_pred hHHH------HHHHHHHHcCCCCCH--hHHHHHHHHHhchhhHHHHHHHHHHHHHhC-C-CCcH---hHHHHHHHHHHhc
Q 046194 543 PKAM------NLVWFMMQRGQRLDH--FTFATVLSACASVATLERGMEVHACGVRAC-L-EFDV---VIGSALVDMYSKC 609 (934)
Q Consensus 543 ~~A~------~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~-~~~~---~~~~~li~~y~~~ 609 (934)
.... ..+.--...|+.-+. ..+.-++.+.++.++.++|..+...+.... + .++. ..-...+.+....
T Consensus 600 ~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~ 679 (895)
T KOG2076|consen 600 NVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYA 679 (895)
T ss_pred HHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhc
Confidence 1111 111111222333333 234556667788888888888887776542 1 2221 2234455556677
Q ss_pred CCHHHHHHHhccCCCC-----Cc---ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH--HHhhCcHH
Q 046194 610 GRIDYASRFFDLMPVR-----NV---YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA--CSHAGLVD 679 (934)
Q Consensus 610 g~~~~A~~~~~~~~~~-----~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~ 679 (934)
+++..|...+..|... ++ ..||...+.+.+.|+-.--.+++..... .+|+..-...++.+ ....+.+.
T Consensus 680 ~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~ 757 (895)
T KOG2076|consen 680 RDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFK 757 (895)
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchH
Confidence 8888888888777643 32 3677766776666665444444444433 23333222222222 34567788
Q ss_pred HHHHHHHHhHHhhCCCCCcccHH-HHHHHHh----------hcCChHHHHHHHHhC-CC-CC--CHHHHHHHHHHHHhcc
Q 046194 680 EGFKHFKSMSQVYGLIPQLEQFS-CMVDLLG----------RAGELDKIEEFINKM-PI-TP--NSLIWRTVLGACCRAN 744 (934)
Q Consensus 680 ~a~~~~~~m~~~~~~~p~~~~y~-~li~~l~----------~~g~~~~A~~~~~~m-~~-~p--~~~~~~~ll~~~~~~~ 744 (934)
.|++.+-.... ..|+...++ ||.-++. |.-.+-.+..++++. .. .+ ...++-.+..+|...
T Consensus 758 ~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~- 833 (895)
T KOG2076|consen 758 HALQEYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQI- 833 (895)
T ss_pred HHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHc-
Confidence 88887665543 567744333 3333332 112234455666544 11 12 455778899999999
Q ss_pred CCCcHHHHHHHHHHHhcCCCCCc------------hHHHHHHHHHcCCChHHHHHHHH
Q 046194 745 CRKTELGRKAANMLFEMEPQNAV------------NYVLLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 745 ~~~~~~a~~~~~~~~~~~p~~~~------------~y~~l~~~~~~~g~~~~a~~~~~ 790 (934)
|-+-.|...++++++..|.+.. +-..|.-+|-..|+..-|.++.+
T Consensus 834 -gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 834 -GLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred -ccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 9999999999999999865321 24467789999999999988754
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=7.3e-09 Score=110.61 Aligned_cols=423 Identities=10% Similarity=0.045 Sum_probs=322.3
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhC
Q 046194 339 EEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLM 418 (934)
Q Consensus 339 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 418 (934)
..=.+++++.++. .|+.+. +=++.....+.+.|+.++..+++. ++.+...+. +|++..-++.|.++++..
T Consensus 363 ~~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNka 432 (913)
T KOG0495|consen 363 KNKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKA 432 (913)
T ss_pred HHHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3334555555552 444432 334455566666788888887775 233444444 456666778888888776
Q ss_pred CC---CCccchHHHHHHHHhCCccHHHHHHHHHH----HHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCC
Q 046194 419 PE---HDQVSWNSVIGAFADSEALVSEAVKYYLD----MRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVA 491 (934)
Q Consensus 419 ~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 491 (934)
.+ .+...|-+-...--.+|+. +...+++.+ +...|+..+...|..=..+|-..|.+-.+..|...++..|++
T Consensus 433 Re~iptd~~IWitaa~LEE~ngn~-~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE 511 (913)
T KOG0495|consen 433 REIIPTDREIWITAAKLEEANGNV-DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE 511 (913)
T ss_pred HhhCCCChhHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc
Confidence 54 4777887777666777877 777777654 455789999999988888999999999999999999999887
Q ss_pred Cch--hHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 046194 492 NET--TIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATV 567 (934)
Q Consensus 492 ~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 567 (934)
... .+|..-.+.|.+.+.++-|+.+|....+- | +...|...+..--..|..++-..+|++.... ++-....+...
T Consensus 512 eed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ 590 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMY 590 (913)
T ss_pred cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHH
Confidence 644 57777888899999999999999887764 3 6778988888888899999999999999886 34455666666
Q ss_pred HHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC--CCCcccccHHHHHHHHcCChHH
Q 046194 568 LSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP--VRNVYSWNSMISGYARHGHGDK 645 (934)
Q Consensus 568 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 645 (934)
..-.-..|++..|+.+++.+.+.... +..++-+-+.......+++.|..+|.+.. .+....|.--+....-.+..++
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHH
Confidence 66677789999999999999886544 67788888889999999999999998775 4666678777777778899999
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHh
Q 046194 646 ALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINK 723 (934)
Q Consensus 646 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~ 723 (934)
|++++++..+ .-|+ ...|..+...+.+.++++.|...|..-.+ .-|+ +..|-.|.++=-+.|.+-.|..++++
T Consensus 670 A~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 670 ALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 9999999888 4677 55677777778889999999988776654 3354 77888888998999999999999998
Q ss_pred C--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 046194 724 M--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 724 m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
. ..+.+...|-..+..=.++ |+.++|+.+..++++--|.+...+.--+++..+.++
T Consensus 745 arlkNPk~~~lwle~Ir~ElR~--gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRMELRA--GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHhcCCCcchhHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 8 3334678899999999999 999999999888888777654444444444443333
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.5e-11 Score=123.12 Aligned_cols=482 Identities=11% Similarity=0.097 Sum_probs=293.0
Q ss_pred cchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhH-HHHHHHHhhccCChhHH
Q 046194 232 YVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAV-GNGLVNMYAKCGTIDDS 310 (934)
Q Consensus 232 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A 310 (934)
.+...|..-|..+....+|+.-++-+...- .-|+.-. --.+-+.|.+...+.+|
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknk-------------------------mf~nag~lkmnigni~~kkr~fska 256 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNK-------------------------MFPNAGILKMNIGNIHFKKREFSKA 256 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhccc-------------------------ccCCCceeeeeecceeeehhhHHHH
Confidence 345556667777777778877777665421 1111111 01122556777788888
Q ss_pred HHHHhcC----CCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHH
Q 046194 311 RSVFRFM----IGKD----SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGE 382 (934)
Q Consensus 311 ~~~f~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 382 (934)
++.++.. |.-+ +...|.+--.+.+.|+++.|+..|+...+. .|+-.+-..++-++...|+-+..++.|..
T Consensus 257 ikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~k 334 (840)
T KOG2003|consen 257 IKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQK 334 (840)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHH
Confidence 8877543 2212 223444555678899999999999888773 57777766666666677888888888888
Q ss_pred HhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHH-----HHHHHHhCCcc-HHHHHHHHHHHHHcCCC
Q 046194 383 GLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNS-----VIGAFADSEAL-VSEAVKYYLDMRRAGWS 456 (934)
Q Consensus 383 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~-----li~~~~~~g~~-~~~A~~l~~~m~~~g~~ 456 (934)
++.....+|..-| .+..+ .|+....|- ++.-.-+.... .++++-.--++...-+.
T Consensus 335 li~ip~~~dddky-------i~~~d------------dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~ 395 (840)
T KOG2003|consen 335 LIDIPGEIDDDKY-------IKEKD------------DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIA 395 (840)
T ss_pred HhcCCCCCCcccc-------cCCcC------------CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccc
Confidence 8765444432211 11100 011111111 11111111110 02222222233322233
Q ss_pred CCccc-HHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHH----
Q 046194 457 PNGVT-FINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNS---- 531 (934)
Q Consensus 457 p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---- 531 (934)
|+-.. +..-+...-.....+.|.. .. -.-..-|.+.|+++.|.+++.-...+ |..+-.+
T Consensus 396 ~~fa~g~dwcle~lk~s~~~~la~d-------------le--i~ka~~~lk~~d~~~aieilkv~~~k-dnk~~saaa~n 459 (840)
T KOG2003|consen 396 PDFAAGCDWCLESLKASQHAELAID-------------LE--INKAGELLKNGDIEGAIEILKVFEKK-DNKTASAAANN 459 (840)
T ss_pred cchhcccHHHHHHHHHhhhhhhhhh-------------hh--hhHHHHHHhccCHHHHHHHHHHHHhc-cchhhHHHhhh
Confidence 33211 1111111111111111111 11 11223467788888888887777665 3322211
Q ss_pred HH-HHHHh-cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 046194 532 MI-SGYIH-NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKC 609 (934)
Q Consensus 532 li-~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 609 (934)
|- --|.+ ..++..|.+.-+...... +-+......--......|++++|.+.+.+++.+.-.-....|| +.-.+-+.
T Consensus 460 l~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~ 537 (840)
T KOG2003|consen 460 LCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEAL 537 (840)
T ss_pred hHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHh
Confidence 11 12333 234556655554443321 1122222222222345688888888888877653332223333 22346778
Q ss_pred CCHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 610 GRIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 610 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
|++++|+..|-.+. ..+....-.+.+.|-...++.+|++++-+... +-|+ ...+.-|...|-+.|+-..|.+++
T Consensus 538 ~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 99999999887654 45666777788899999999999999988776 4555 666777888899999999999886
Q ss_pred HHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 686 KSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 686 ~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
-.--+ -++.+.++..-|..-|....-+++|..+|++. -+.|+.+-|..++..|.+.. |+++.|...++......|+
T Consensus 616 ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs-gnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 616 YDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS-GNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred hhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhCcc
Confidence 55433 24445888888999999999999999999998 58999999999999888765 9999999999999999999
Q ss_pred CCchHHHHHHHHHcCCCh
Q 046194 765 NAVNYVLLANMYASGGKW 782 (934)
Q Consensus 765 ~~~~y~~l~~~~~~~g~~ 782 (934)
|....-.|+.+....|..
T Consensus 693 dldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 693 DLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred chHHHHHHHHHhccccch
Confidence 999999999998888853
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=2.3e-13 Score=143.15 Aligned_cols=253 Identities=13% Similarity=0.145 Sum_probs=112.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHH-HHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 046194 534 SGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVL-SACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRI 612 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 612 (934)
..+.+.|++++|++++.+.......|+...|-.++ ..+...++.+.|.+.++.+...+.. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 33444555555555554333322123333332222 2333455555566555555544322 44556666666 678888
Q ss_pred HHHHHHhccCC--CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 613 DYASRFFDLMP--VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDG-PLPDHVTFVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 613 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
++|.+++...- .++...+..++..+.+.|+++++..+++++.... .+++...|..+...+.+.|+.++|.+.+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887653 3566678888889999999999999999987643 23455667777778899999999999999998
Q ss_pred HhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 690 QVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 690 ~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
+ ..|+ ......++..+...|+.+++.++++.. ..++|+..|..+..++... |+.+.|...++++.+.+|+|+
T Consensus 174 ~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l--g~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 174 E---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL--GRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp H---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH--T-HHHHHHHHHHHHHHSTT-H
T ss_pred H---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc--ccccccccccccccccccccc
Confidence 7 4565 778889999999999999988888776 2245566889999999999 999999999999999999999
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 767 VNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 767 ~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
.....+++++...|+.++|.++++..-
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987654
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.5e-11 Score=132.03 Aligned_cols=264 Identities=13% Similarity=0.147 Sum_probs=185.1
Q ss_pred hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCC--CCcHhHHHHHHHHHHhcCCHH-HHHHH
Q 046194 542 LPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACL--EFDVVIGSALVDMYSKCGRID-YASRF 618 (934)
Q Consensus 542 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~-~A~~~ 618 (934)
..+|+..|.+.... +.-.......+-.+|-.+++++++..+|+.+.+... --+..+|++.+--+-+.=.+. -|..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555553322 222334455555566666666666666666655321 114556655543322211111 12222
Q ss_pred hccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC
Q 046194 619 FDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLP-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ 697 (934)
Q Consensus 619 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 697 (934)
.+. ....+.+|.++..+|.-+++++.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+.... .+
T Consensus 414 i~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~ 485 (638)
T KOG1126|consen 414 IDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VD 485 (638)
T ss_pred Hhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CC
Confidence 222 234567999999999999999999999999988 567 477787777777888889999999987754 67
Q ss_pred cccHHH---HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 698 LEQFSC---MVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 698 ~~~y~~---li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
+.||++ |.-.|.+.++++.|+-.|+++ .+.|. .++...+...+.+. |+.|+|.+.+++++.++|.|+..-+..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~--k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL--KRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh--hhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 777776 456788999999999999888 78885 44555566666666 999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHHC
Q 046194 773 ANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDA 842 (934)
Q Consensus 773 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~ 842 (934)
+.++...+++++|.+.++++++ .-|+..-++.-+.++.++|+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--------------------------~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--------------------------LVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--------------------------hCcchHHHHHHHHHHHHHHccc
Confidence 9999999999999999999885 3355666777777777777644
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=3.4e-10 Score=116.73 Aligned_cols=211 Identities=13% Similarity=0.130 Sum_probs=158.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHH
Q 046194 575 ATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFS 651 (934)
Q Consensus 575 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 651 (934)
|+.-.+.+-++.+++....++. .|--+..+|....+.++-++.|+.... .|..+|..-...+.-.+++++|+.=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554332221 244445567777777777777776552 355577766677777788999999999
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 046194 652 QMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN 729 (934)
Q Consensus 652 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~ 729 (934)
+.+. +.|+ ...|..+..+..+.+.++++...|++..++ ++-.++.|+.....+...+++++|.+.++.. .++|.
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988 5666 556777777777889999999999999985 5444899999999999999999999999876 45554
Q ss_pred ---------HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 730 ---------SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 730 ---------~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+.+-.+++- .+-. +++..|+.+.+++++++|.....|..|+.+....|+.++|.++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~-~qwk--~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLV-LQWK--EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhh-hchh--hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 223233332 2344 899999999999999999999999999999999999999999988653
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7.5e-09 Score=106.46 Aligned_cols=253 Identities=10% Similarity=0.063 Sum_probs=197.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC--CcHhHHHHHHHHHHhcCC
Q 046194 534 SGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLE--FDVVIGSALVDMYSKCGR 611 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~y~~~g~ 611 (934)
.+|-...+.++++.-.......|..-+...-+....+.-+..++++|..+|+.+.+...- -|..+|+.++-.--.+..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 455555677788887777777776555544444444556778999999999999987321 167777766533322222
Q ss_pred HH-HHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 612 ID-YASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 612 ~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
+. -|..+++ +.+--+.|...+.+-|...++.++|+..|++..+ +.|. ...|+.+..-|....+...|++-++...
T Consensus 315 Ls~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 22 2333332 2333455777888889999999999999999998 4676 4557666677999999999999999998
Q ss_pred HhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 690 QVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 690 ~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
+ +.| |-..|-.|+++|.-.+...=|+-+|++. ..+| |...|.+|...|.+. ++.++|+..++.++.....+.
T Consensus 392 d---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl--~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 392 D---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL--NRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred h---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh--ccHHHHHHHHHHHHhccccch
Confidence 6 444 4778999999999999999999999998 6777 578999999999999 999999999999999998899
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 767 VNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 767 ~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..|+.|+++|-+.++.++|...+++-.+
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999876654
No 41
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=9.6e-07 Score=98.90 Aligned_cols=695 Identities=13% Similarity=0.134 Sum_probs=387.4
Q ss_pred HHHhcCCCCchhhhHHHHHHhhcCChhhHHHhhccCCC--CChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcc-
Q 046194 11 ILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPD--RNSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRY- 87 (934)
Q Consensus 11 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~- 87 (934)
..+.|..|| |--+|....+ -+.+++.++.-.|++ +...-.+.+...+......+.+..++-..+.. -.|+..
T Consensus 504 ~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~Pd~g~ 578 (1666)
T KOG0985|consen 504 AKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NSPDEGH 578 (1666)
T ss_pred HHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CChhhhh
Confidence 345666776 4445555554 556666666655554 34445566666666666666666655444332 233322
Q ss_pred cHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCC--CCcccHHHH----
Q 046194 88 ALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIET--RDLISWNSI---- 161 (934)
Q Consensus 88 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~--~~~~~~~~l---- 161 (934)
.-..||.. .+-.|-++.+.++..+.-.+-. +-.+.+.+.+. |-...|.+-+..+.. |.++.-+.+
T Consensus 579 LQTrLLE~-------NL~~aPqVADAILgN~mFtHyD-ra~IAqLCEKA-GL~qraLehytDl~DIKR~vVhth~L~pEw 649 (1666)
T KOG0985|consen 579 LQTRLLEM-------NLVHAPQVADAILGNDMFTHYD-RAEIAQLCEKA-GLLQRALEHYTDLYDIKRVVVHTHLLNPEW 649 (1666)
T ss_pred HHHHHHHH-------HhccchHHHHHHHhcccccccc-HHHHHHHHHhc-chHHHHHHhcccHHHHHHHHHHhccCCHHH
Confidence 12222221 1122233333334333222222 66777778888 999999988877753 333221111
Q ss_pred HHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHh-----------CCCCC
Q 046194 162 ISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKA-----------GLLSD 230 (934)
Q Consensus 162 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~-----------g~~~~ 230 (934)
+..|.-.-.++++++.++.|....+ +-|..+..-+-.-+...-..+. ..++|+..+.. ++.-|
T Consensus 650 Lv~yFg~lsve~s~eclkaml~~Ni----rqNlQi~VQvatky~eqlg~~~--li~lFE~fks~eGL~yfLgSivn~seD 723 (1666)
T KOG0985|consen 650 LVNYFGSLSVEDSLECLKAMLSANI----RQNLQIVVQVATKYHEQLGAQA--LIELFESFKSYEGLYYFLGSIVNFSED 723 (1666)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHhCHHH--HHHHHHhhccchhHHHHHHHHhccccC
Confidence 2344445568899999999998877 6666555444444433322222 44555554431 35677
Q ss_pred ccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHH--HHHHHHHcCCCchhHHHHHHHHhhccCChh
Q 046194 231 LYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEV--HGYLIRSGLFDMVAVGNGLVNMYAKCGTID 308 (934)
Q Consensus 231 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 308 (934)
+.+.--.|.+.++.|++.+.+++.++-.--|+.-...+++...-..++ --..-+.++.+|.+ .|.-.+.+.
T Consensus 724 pevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlv-------lYLyrnn~~ 796 (1666)
T KOG0985|consen 724 PEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLV-------LYLYRNNLQ 796 (1666)
T ss_pred chHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHH-------HHHHHhhHH
Confidence 788888999999999999999998775433321111111000000000 00000111112211 122222222
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCC
Q 046194 309 DSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGL 388 (934)
Q Consensus 309 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 388 (934)
+=.+++-+-..| .---.++.++..-...++.++-+-.-.. |. +...-+..-+-+.+++..-...++..+..|.
T Consensus 797 kyIE~yVQkvNp--s~~p~VvG~LLD~dC~E~~ik~Li~~v~-gq----~~~deLv~EvEkRNRLklLlp~LE~~i~eG~ 869 (1666)
T KOG0985|consen 797 KYIEIYVQKVNP--SRTPQVVGALLDVDCSEDFIKNLILSVR-GQ----FPVDELVEEVEKRNRLKLLLPWLESLIQEGS 869 (1666)
T ss_pred HHHHHHHhhcCC--cccchhhhhhhcCCCcHHHHHHHHHHHh-cc----CChHHHHHHHHhhhhHHHHHHHHHHHHhccC
Confidence 222222211111 1112233333333333443333222222 21 1223344555566677777777777777774
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHH-------------HHH------HHH
Q 046194 389 DSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEA-------------VKY------YLD 449 (934)
Q Consensus 389 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A-------------~~l------~~~ 449 (934)
.|..++|+|...|....+-.+- .+++ |..-=+..+.-||...++ .-| +.+ |+.
T Consensus 870 -~d~a~hnAlaKIyIDSNNnPE~--fLke----N~yYDs~vVGkYCEKRDP-~lA~vaYerGqcD~elI~vcNeNSlfK~ 941 (1666)
T KOG0985|consen 870 -QDPATHNALAKIYIDSNNNPER--FLKE----NPYYDSKVVGKYCEKRDP-HLACVAYERGQCDLELINVCNENSLFKS 941 (1666)
T ss_pred -cchHHHhhhhheeecCCCChHH--hccc----CCcchhhHHhhhhcccCC-ceEEEeecccCCcHHHHHhcCchhHHHH
Confidence 5778889998888877654321 1111 111111122223322222 111 111 000
Q ss_pred HHHc-CCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCC--CchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 046194 450 MRRA-GWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVA--NETTIENALLSCYGKCGEMDDCEKIFARMSERRDE 526 (934)
Q Consensus 450 m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 526 (934)
..+- --+.|...|..++. ..-..-+++.++++..+++ .|+.-.+.-+.++...+-..+-.++++.+.-.|++
T Consensus 942 ~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~ 1016 (1666)
T KOG0985|consen 942 QARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV 1016 (1666)
T ss_pred HHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc
Confidence 0000 00112223332221 1112234556666666654 34555566778888888888888888887665444
Q ss_pred ch-----HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHH
Q 046194 527 VS-----WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSA 601 (934)
Q Consensus 527 ~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 601 (934)
++ -|.||-.-.+ -+..+..+..+++-.-. .|+ +...+...+-+++|..+|+. +..+....+.
T Consensus 1017 Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkk-----f~~n~~A~~V 1083 (1666)
T KOG0985|consen 1017 FSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKK-----FDMNVSAIQV 1083 (1666)
T ss_pred cccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHH-----hcccHHHHHH
Confidence 33 2333333232 33444555555543321 222 22334556677788777765 3334555555
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 602 LVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 602 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
||+ ..+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+. -|...|..++.++++.|.+++-
T Consensus 1084 Lie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1084 LIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred HHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH
Confidence 553 456788888887776654 46999999999999999999988643 3567899999999999999999
Q ss_pred HHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
.+++...+++ .-+|.++ +.|+-+|++.+++.|-.+++ .-||..-......-|... +.++-|+-.+..
T Consensus 1153 v~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~--~~y~aAkl~y~~---- 1219 (1666)
T KOG0985|consen 1153 VKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEE--KMYEAAKLLYSN---- 1219 (1666)
T ss_pred HHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhh--hhhHHHHHHHHH----
Confidence 9999877774 5556554 67999999999999988887 457888888899999999 898888777754
Q ss_pred CCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 762 EPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 762 ~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
.+.|..|+..+...|.+..|...-++..
T Consensus 1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4678888888899999988877644443
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.33 E-value=6.4e-10 Score=122.57 Aligned_cols=226 Identities=12% Similarity=-0.021 Sum_probs=126.9
Q ss_pred HHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHH
Q 046194 501 LSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLE 578 (934)
Q Consensus 501 i~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 578 (934)
...+...|+++.|...++.+.+. | +......+...|.+.|++++|++++..+.+.+..++. .+..+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------
Confidence 44556666666666666665553 3 3444555556666666666666666666655433211 111000
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 579 RGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 579 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
...+..++....+..+.+...++++.++. .++.....+...+...|+.++|.+++++..+
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 01112222222333344455555555542 3445566666667777777777777777666
Q ss_pred CCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHH
Q 046194 656 DGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWR 734 (934)
Q Consensus 656 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~ 734 (934)
. .||... .++.+....++.+++++..+...+. .+-|+..+.++..++.+.|++++|.+.|+++ ...|+..++.
T Consensus 292 ~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 292 R--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred c--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 2 344321 1222333446777777777766653 2222455666777777777777777777766 5667777766
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 735 TVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 735 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
.|...+... |+.+.|...+++.+.+.
T Consensus 366 ~La~~~~~~--g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRL--HKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHhhh
Confidence 677777766 77777777777766553
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.5e-09 Score=108.77 Aligned_cols=357 Identities=11% Similarity=0.093 Sum_probs=214.7
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccH--HH
Q 046194 387 GLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTF--IN 464 (934)
Q Consensus 387 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~--~~ 464 (934)
+...|....-...-.+-+.|..+.|...|......-+..|.+-+....-..+ .+-+.. .. .|...|..-+ -.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~--~e~~~~---l~-~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD--IEILSI---LV-VGLPSDMHWMKKFF 232 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch--HHHHHH---HH-hcCcccchHHHHHH
Confidence 3445555555555566677888888888877765434444433322111111 111111 11 1111111111 11
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhH
Q 046194 465 ILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPK 544 (934)
Q Consensus 465 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 544 (934)
+..++....+.+++.+-.......|++.+...-+....+.-...+++.|+.+|+++... |+.-
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYR---------------- 295 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYR---------------- 295 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCc----------------
Confidence 23344444455555555555566666655555554444555555566666666655543 1000
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC
Q 046194 545 AMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV 624 (934)
Q Consensus 545 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 624 (934)
--|..+|+.++-.-.....+.---+....+ ..+ -+.+...+.+.|+-.++.+.|...|+...+
T Consensus 296 -------------l~dmdlySN~LYv~~~~skLs~LA~~v~~i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALk 358 (559)
T KOG1155|consen 296 -------------LDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALK 358 (559)
T ss_pred -------------chhHHHHhHHHHHHhhhHHHHHHHHHHHHh--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHh
Confidence 002233333332221111111000000001 112 234455566777777888888888887764
Q ss_pred CC---cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cc
Q 046194 625 RN---VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLP-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LE 699 (934)
Q Consensus 625 ~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 699 (934)
-| ...|+.|..-|...++...|++-+++.++ +.| |-..|-.|..+|.-.+...-|+-+|++..+ ++|+ ..
T Consensus 359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsR 433 (559)
T KOG1155|consen 359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSR 433 (559)
T ss_pred cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchH
Confidence 33 34788888888888888888888888888 444 567788888888888888888888888865 5665 77
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHh-------cCCCCCchHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFE-------MEPQNAVNYV 770 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~y~ 770 (934)
.|.+|.++|.+.++.++|.+-|+.. .-..+..++..|...+... ++.++|.+++++-++ .+|+...+-.
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l--~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~ 511 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL--KDLNEAAQYYEKYVEVSELEGEIDDETIKARL 511 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 8888899998889999998888877 2233557788888888888 888888888888766 3344445556
Q ss_pred HHHHHHHcCCChHHHHHHHH
Q 046194 771 LLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 771 ~l~~~~~~~g~~~~a~~~~~ 790 (934)
-|++-+.+.++|++|...-.
T Consensus 512 fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 512 FLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHhhcchHHHHHHHH
Confidence 68888889999999876533
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.28 E-value=1.7e-09 Score=119.95 Aligned_cols=145 Identities=10% Similarity=-0.017 Sum_probs=94.8
Q ss_pred HHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhhCcHHHHHHHHH
Q 046194 613 DYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTF---VGVLSACSHAGLVDEGFKHFK 686 (934)
Q Consensus 613 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~ 686 (934)
+...+.++..+. .+...+..+...+...|+.++|++++++..+. .||.... ..........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 344444444442 36667777777788888888888888887774 4554321 111112233467777777777
Q ss_pred HhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 687 SMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINK--M-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 687 ~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+..++..|...+... |+.+.|...+++.+..
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~--g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA--GDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Confidence 7766322222224566778888888888888888883 3 5678887777888888888 8888888888876543
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=2.5e-07 Score=95.47 Aligned_cols=417 Identities=11% Similarity=0.046 Sum_probs=245.7
Q ss_pred CchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCccchHHHHHHHHhCCccHHHHHHHHH
Q 046194 371 GWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMP--EHDQVSWNSVIGAFADSEALVSEAVKYYL 448 (934)
Q Consensus 371 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~~A~~l~~ 448 (934)
|++..|+++|+.-.+ ..|+...|.+.|+.=.+-..++.|..++++.. .|++.+|---..-=-++|.. ..|..+|.
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~-~~aR~Vye 231 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNV-ALARSVYE 231 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcH-HHHHHHHH
Confidence 344444444443332 23444444444444444444444444444422 24444444443333444444 44444444
Q ss_pred HHHHc-CC-CCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHhcCCHHHHHHH--------H
Q 046194 449 DMRRA-GW-SPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANE-TTIENALLSCYGKCGEMDDCEKI--------F 517 (934)
Q Consensus 449 ~m~~~-g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~--------~ 517 (934)
...+. |- .-+...|++....=.+...++.|.-++...+..-.... ...|..+...=-+-|+.....+. +
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 33321 10 00111222222233344566777777777766543332 33444444444445554333322 2
Q ss_pred HhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--hH---HH-HHHH-HH---hchhhHHHHHHHHH
Q 046194 518 ARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH--FT---FA-TVLS-AC---ASVATLERGMEVHA 585 (934)
Q Consensus 518 ~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t---~~-~ll~-a~---~~~~~~~~a~~i~~ 585 (934)
+.+... | |-.+|--.+..--..|+.+...++|++.+.. ++|-. .. |. .-|+ +| ....+.+.+.++++
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 222222 3 6667777777777789999999999998875 55532 11 11 1122 11 24678889999999
Q ss_pred HHHHhCCCCcHhHHHHHHHHHH----hcCCHHHHHHHhccCC--CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 046194 586 CGVRACLEFDVVIGSALVDMYS----KCGRIDYASRFFDLMP--VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPL 659 (934)
Q Consensus 586 ~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 659 (934)
..++ -++...+++.-+=-+|+ ++.++..|.+++.... .|-..++..-|..-.+.++++....+|++.++-+ +
T Consensus 391 ~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-P 468 (677)
T KOG1915|consen 391 ACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-P 468 (677)
T ss_pred HHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-h
Confidence 8888 24445566665554554 6788999999998765 4667778888888888999999999999999853 3
Q ss_pred CChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 046194 660 PDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLG 738 (934)
Q Consensus 660 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 738 (934)
-|..+|......=...|+.+.|..+|+-..+.-.+......|-+.|+.-...|.++.|..++++. ...+...+|-++..
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 34677877777777889999999999988875223333456777778778899999999999987 45556668877765
Q ss_pred HHHh---ccCC-----------CcHHHHHHHHHHHhc----CCCC--CchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 739 ACCR---ANCR-----------KTELGRKAANMLFEM----EPQN--AVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 739 ~~~~---~~~~-----------~~~~a~~~~~~~~~~----~p~~--~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
-=.. +..+ ++..|..+++.+... +|.. .......-+.-...|.-.+...+-+.|.
T Consensus 549 fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 549 FEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 4331 1113 456777777776543 3322 1223334445556676666666666554
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.5e-08 Score=106.97 Aligned_cols=260 Identities=12% Similarity=0.037 Sum_probs=186.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046194 492 NETTIENALLSCYGKCGEMDDCEKIFARMSER--RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLS 569 (934)
Q Consensus 492 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 569 (934)
.++.+.-...+-+...+++.+..++++.+.+. +....+..-|.++...|+..+-..+=.+|.+.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-------------- 307 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-------------- 307 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--------------
Confidence 34444445555566666666666666666554 23334444555566666655555555555543
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCC---cccccHHHHHHHHcCChHHH
Q 046194 570 ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRN---VYSWNSMISGYARHGHGDKA 646 (934)
Q Consensus 570 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 646 (934)
.+..+.+|-++.-.|.-.|+..+|++.|.....-| ...|-.....|+-.|..++|
T Consensus 308 ----------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQA 365 (611)
T KOG1173|consen 308 ----------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQA 365 (611)
T ss_pred ----------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHH
Confidence 22344555556656666788888888887655333 23788888899999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 647 LTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 647 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
+.-+...-+. ++-...-+..+.--|.+.+..+.|.++|.+.. ++.|+ +..++-+.-+.-..+.+.+|..+|+..
T Consensus 366 maaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 366 MAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 9988887763 22223334445556888999999999998885 56676 667777777777888999999888765
Q ss_pred -C------CCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 725 -P------ITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 725 -~------~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+ ..+ =..+|+.|..+|++. +..++|...+++++.+.|.++.+|..++-+|...|+.+.|.+.+.+..
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl--~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKL--NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHH--hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1 111 245688999999999 999999999999999999999999999999999999999999887665
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.26 E-value=7.5e-09 Score=114.12 Aligned_cols=246 Identities=9% Similarity=-0.015 Sum_probs=158.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhHHH--HHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 046194 537 IHNELLPKAMNLVWFMMQRGQRLDHFTFA--TVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDY 614 (934)
Q Consensus 537 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 614 (934)
.+.|+++.|...|.++.+. .|+..... .....+...|+.+.|.+.++.+.+.. +-++.+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555432 23322111 11234444555555555555554433 2244555555666666666666
Q ss_pred HHHHhccCCCCCcc-----------cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHH
Q 046194 615 ASRFFDLMPVRNVY-----------SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFK 683 (934)
Q Consensus 615 A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 683 (934)
|.+++..+.+.... +|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66665555432111 2333333334445566677777776543 24456678888899999999999999
Q ss_pred HHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 684 HFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 684 ~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
++++..+ ..|+... .++......|+.+++.+.+++. +..|+ +.....+...|... ++++.|+..++++.+.
T Consensus 285 ~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~--~~~~~A~~~le~al~~ 357 (398)
T PRK10747 285 IILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH--GEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhc
Confidence 9988876 3444421 1233334569999999999988 55665 45577888888888 9999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 762 EPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 762 ~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.|++ ..|..|+.++.+.|+.++|.+.+++-..
T Consensus 358 ~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9986 5577999999999999999999886643
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=4.7e-10 Score=120.83 Aligned_cols=270 Identities=13% Similarity=0.085 Sum_probs=202.0
Q ss_pred HHHHHHHHHhhccC-CCcchH--HHHHHHHHhcCChhHHHHHHHHHHHcC-C-CCCHhHHHHHHHHHhchhhHHHHHHHH
Q 046194 510 MDDCEKIFARMSER-RDEVSW--NSMISGYIHNELLPKAMNLVWFMMQRG-Q-RLDHFTFATVLSACASVATLERGMEVH 584 (934)
Q Consensus 510 ~~~A~~~~~~~~~~-p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~a~~i~ 584 (934)
..+|...|..++.. +|+. | ..+..+|...+++++|.++|+...+.. . .-+...|.++|--+-+. .++..+
T Consensus 335 ~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46788888886654 4544 4 345567888888899999988887642 1 11446666665433221 111222
Q ss_pred H-HHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCC---cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046194 585 A-CGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRN---VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLP 660 (934)
Q Consensus 585 ~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 660 (934)
. .+++ --+-.+.+|.++.+.|.-.++.+.|++.|++..+-| ..+|+.+..-+.....+|+|...|+..+. +.|
T Consensus 410 aq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 1222 123368899999999999999999999999987544 45788888888889999999999999876 455
Q ss_pred C-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CHHHHH
Q 046194 661 D-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP---NSLIWR 734 (934)
Q Consensus 661 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p---~~~~~~ 734 (934)
. -..|..+...|.+.++++.|.-.|+...+ +.|. .....++...+-+.|+.|+|+.+++++ .+.| -.....
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 5 34577777789999999999999999865 7777 677788889999999999999999998 3333 222333
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 735 TVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 735 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+.+ +... ++.++|.+.+|.+.++-|++...|.+++.+|.+.|+.+.|..-+..+.+
T Consensus 564 ~~i--l~~~--~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 564 ASI--LFSL--GRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHH--HHhh--cchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 332 3333 8899999999999999999999999999999999999999877665554
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.26 E-value=5.5e-09 Score=115.87 Aligned_cols=126 Identities=10% Similarity=0.041 Sum_probs=78.1
Q ss_pred ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCccc---HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-H--HHH
Q 046194 661 DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQ---FSCMVDLLGRAGELDKIEEFINKM-PITPN-S--LIW 733 (934)
Q Consensus 661 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~--~~~ 733 (934)
+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+.+.+.+++. ...|+ + ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 4555666666777777777777777777663 244221 111111223346667777777665 33333 2 455
Q ss_pred HHHHHHHHhccCCCcHHHHHHHH--HHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 734 RTVLGACCRANCRKTELGRKAAN--MLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 734 ~~ll~~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
.++.+.|... |+++.|...++ ...+..|++. .+..++.++.+.|+.++|.+++++-
T Consensus 339 ~sLg~l~~~~--~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 339 RALGQLLMKH--GEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHc--ccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777777 77777777777 4555666543 3557777777777777777777654
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=1.7e-08 Score=99.26 Aligned_cols=307 Identities=13% Similarity=0.130 Sum_probs=168.8
Q ss_pred CCccHHHHHHHHHHHHHcCCCCCcccH---HHHHHHHhccCCchHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCC
Q 046194 436 SEALVSEAVKYYLDMRRAGWSPNGVTF---INILAAASSFSMGKLGHQVHAQVIKYNVANE---TTIENALLSCYGKCGE 509 (934)
Q Consensus 436 ~g~~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 509 (934)
+.+. ++|.++|-+|.+. |..|| .+|-+-+.+.|.++.|..+|+-+.++.--+. ....-.|..-|...|-
T Consensus 48 s~Q~-dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQP-DKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCc-chHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 3556 8999999999873 33333 3344444555555555555555444321111 1122233344455555
Q ss_pred HHHHHHHHHhhccCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHH
Q 046194 510 MDDCEKIFARMSERR--DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACG 587 (934)
Q Consensus 510 ~~~A~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 587 (934)
+|.|+.+|..+.+.| -......|+..|-...+|++|++.-+++...+-++..+-.
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI----------------------- 179 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI----------------------- 179 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH-----------------------
Confidence 555555555544431 1122333444444455555555544444443322221110
Q ss_pred HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcc---cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh
Q 046194 588 VRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVY---SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVT 664 (934)
Q Consensus 588 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 664 (934)
...|.-|...+.-..+.+.|..++.+..+.|.. .--.+...+...|+++.|++.++...+.+..--..+
T Consensus 180 --------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 180 --------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred --------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 123334555555566777777777766543333 222344567778888888888888888642222455
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhc
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFI-NKMPITPNSLIWRTVLGACCRA 743 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~ 743 (934)
...|..+|.+.|+.+++..++..+.+. .+....-..|.+......-.+.|...+ +...-+|+...+.-|+..-...
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 777778888888888888888887763 344444455555444444445555444 3446677777776666654322
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEE
Q 046194 744 NCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHV 814 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 814 (934)
++.|++.+...+++.|....++..|.+.-...+-..|.
T Consensus 329 ---------------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~ 366 (389)
T COG2956 329 ---------------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHT 366 (389)
T ss_pred ---------------------------------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCccee
Confidence 12355777777777777666666665444444434443
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.2e-08 Score=104.00 Aligned_cols=436 Identities=11% Similarity=0.096 Sum_probs=271.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH-HHhhccCchHHHHHHHHHHhhhCCCCch----hHHHHHHHHH
Q 046194 328 MISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTL-SSCASLGWIMLGQQIHGEGLKLGLDSDV----SVSNALLSLY 402 (934)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~g~~~~~----~~~~~li~~y 402 (934)
|..-|..+....+|+..|+-..+...-|+.-.+..-+ ..+.+...+..|...+...+..-...+. .+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3445666777788888888887777777765433222 2334556677777777777665332222 2344455567
Q ss_pred HhcCChHHHHHHHhhCCC--CCccc-hHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHH
Q 046194 403 ADAGYLSRCLKVFFLMPE--HDQVS-WNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGH 479 (934)
Q Consensus 403 ~~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 479 (934)
.+.|.+++|...|+...+ ||..+ +|..|-++ --|+. ++..+.|.+|..-...||..-|. +.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f-~i~d~-ekmkeaf~kli~ip~~~dddkyi-------~~------- 350 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAF-AIGDA-EKMKEAFQKLIDIPGEIDDDKYI-------KE------- 350 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhhe-ecCcH-HHHHHHHHHHhcCCCCCCccccc-------CC-------
Confidence 888999999999987654 55554 55444444 45676 88888899998766666665441 00
Q ss_pred HHHHHHHHhcCCCchhHHHHH-----HHHHHhcCCHHHHHHHHH---hhccC---CCcc---hHH---------------
Q 046194 480 QVHAQVIKYNVANETTIENAL-----LSCYGKCGEMDDCEKIFA---RMSER---RDEV---SWN--------------- 530 (934)
Q Consensus 480 ~i~~~~~~~g~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~---~~~~~---p~~~---~~~--------------- 530 (934)
.-.|+....|.- +.-..+..+ ..|++..- .+... ||-. -|.
T Consensus 351 ---------~ddp~~~ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 351 ---------KDDPDDNLLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID 420 (840)
T ss_pred ---------cCCcchHHHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh
Confidence 001111111111 111111111 11111111 11110 1110 011
Q ss_pred ---HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHH--HHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 046194 531 ---SMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFA--TVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDM 605 (934)
Q Consensus 531 ---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 605 (934)
.-..-|.++|+++.|++++.-+.+..-+.-+..-+ ..+.-...-.++..|.++-+.++... .-++...+.-.+.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNI 499 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCce
Confidence 11234788999999999998877654333222222 22222223345666666666554321 0112221112223
Q ss_pred HHhcCCHHHHHHHhccCCCCCcccccHHH---HHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHH
Q 046194 606 YSKCGRIDYASRFFDLMPVRNVYSWNSMI---SGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGF 682 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 682 (934)
-...|+++.|.+.+.+....|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+...|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 34579999999999999877766433333 3466789999999999887652 2344566777788899999999999
Q ss_pred HHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 683 KHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 683 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
+++.+... -++-|+...+-|.++|-+.|+-..|.+..-+. ..-| +..+..-|...|... .-.+.+...++++.-
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt--qf~ekai~y~ekaal 654 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT--QFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh--HHHHHHHHHHHHHHh
Confidence 99877754 24444889999999999999999999876554 4333 444444455555555 678999999999999
Q ss_pred cCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 761 MEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 761 ~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
+.|....--..++..+.+.|++..|.++++...++
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99987777778888999999999999999988754
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.22 E-value=7.5e-11 Score=124.10 Aligned_cols=191 Identities=14% Similarity=0.102 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhc
Q 046194 496 IENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRG-QRLDHFTFATVLSACAS 573 (934)
Q Consensus 496 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~ 573 (934)
.+..++.. ...+++++|.+++...-++ ++...+..++..+.+.++++++..++.+..... .+++...|......+.+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 33445554 5666777777666654333 355566666777777777777777777765432 23445555566666666
Q ss_pred hhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHH
Q 046194 574 VATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLF 650 (934)
Q Consensus 574 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 650 (934)
.|+.++|...++.+++.... |..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|++++|+..|
T Consensus 159 ~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 77777777777776664322 45566667777777777776666555443 345566777777777777777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 651 SQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 651 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
++..+.. +.|..+...+..++...|+.++|..+..+..
T Consensus 238 ~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 238 EKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred ccccccc-ccccccccccccccccccccccccccccccc
Confidence 7776642 2245556666667777777777777666554
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=2.2e-11 Score=89.26 Aligned_cols=50 Identities=34% Similarity=0.696 Sum_probs=48.3
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhc
Q 046194 153 RDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYS 206 (934)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~ 206 (934)
||+++||++|.+|++.|++++|+++|++|.+.|+ +||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~----~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGI----KPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999999 9999999999999874
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=5.8e-11 Score=86.98 Aligned_cols=50 Identities=28% Similarity=0.513 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 046194 524 RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACAS 573 (934)
Q Consensus 524 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 573 (934)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 55
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=2.1e-07 Score=96.06 Aligned_cols=390 Identities=11% Similarity=0.065 Sum_probs=260.7
Q ss_pred CChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHH
Q 046194 406 GYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVH 482 (934)
Q Consensus 406 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 482 (934)
+++..|..+|++... +++..|---+..=.++... ..|..++++.+..-...|..- ---+..=-.+|++..|+++|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~v-NhARNv~dRAvt~lPRVdqlW-yKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQV-NHARNVWDRAVTILPRVDQLW-YKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhH-hHHHHHHHHHHHhcchHHHHH-HHHHHHHHHhcccHHHHHHH
Confidence 344444445444433 2333444444444444444 555555554443222222211 12222234467777888887
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc-CC-CC
Q 046194 483 AQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE-RRDEVSWNSMISGYIHNELLPKAMNLVWFMMQR-GQ-RL 559 (934)
Q Consensus 483 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~-~p 559 (934)
..-.+ ..|+...|.+.|+.=.+-..++.|..++++..- .|++.+|--...--.++|+...|..+|....+. |- ..
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 76554 468888889999998899999999999988755 478888888888788889988888888877653 11 11
Q ss_pred CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHh---cc-----CCCC---Cc
Q 046194 560 DHFTFATVLSACASVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYASRFF---DL-----MPVR---NV 627 (934)
Q Consensus 560 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~---~~-----~~~~---~~ 627 (934)
+...|+++..-=.+...++.|.-++..++..=... ....|..+...--+-|+......+. .. +... |.
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 22334444333445677888999998888752221 2455555555444556543333222 22 2222 55
Q ss_pred ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-------HHHHHHHH---HhhCcHHHHHHHHHHhHHhhCCCCC
Q 046194 628 YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVT-------FVGVLSAC---SHAGLVDEGFKHFKSMSQVYGLIPQ 697 (934)
Q Consensus 628 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~ 697 (934)
.+|--.+..--..|+.+...++|++.+.. ++|-..- |.-+=-+| ....+++.+.++|+...+ +.|.
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---lIPH 398 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---LIPH 398 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hcCc
Confidence 57777777777889999999999999875 5663211 11111122 357789999999998876 5555
Q ss_pred -cccHHHHHHH----HhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHH
Q 046194 698 -LEQFSCMVDL----LGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVL 771 (934)
Q Consensus 698 -~~~y~~li~~----l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~ 771 (934)
..+++-+=-+ ..|+-++..|.+.+... |.-|-..+|...+..=.+. ++++....++++.++-.|.|..++..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL--~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQL--REFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHH--hhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 5666655444 45788999999999876 8899999999999888888 99999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeE
Q 046194 772 LANMYASGGKWEDVAKARKAMKEAEVKKEAGCSW 805 (934)
Q Consensus 772 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 805 (934)
.+.+-...|+++.|..+++...++...-.|..-|
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 9999999999999999999887766544444333
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=2.6e-06 Score=91.50 Aligned_cols=498 Identities=14% Similarity=0.146 Sum_probs=278.7
Q ss_pred cchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHH
Q 046194 232 YVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSR 311 (934)
Q Consensus 232 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 311 (934)
..|-..+....+.|++...+..|++....=+++- ...+|...+......|-++.+.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq------------------------H~rIW~lyl~Fv~~~~lPets~ 158 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ------------------------HDRIWDLYLKFVESHGLPETSI 158 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh------------------------hccchHHHHHHHHhCCChHHHH
Confidence 3455666667777777777777777654322221 1123334444444555556666
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC------CCCChhhHHHHHHHhhccCchHHHHHHHHHHhh
Q 046194 312 SVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDG------LMSSNFSLISTLSSCASLGWIMLGQQIHGEGLK 385 (934)
Q Consensus 312 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 385 (934)
+++++..+-++..-+--|..++..+++++|-+.+....... .+.+...|.-+-...++..+.-....+ +.+++
T Consensus 159 rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR 237 (835)
T KOG2047|consen 159 RVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIR 237 (835)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHH
Confidence 66666555555555566666666666666666665554321 112222333333333333222211111 11222
Q ss_pred hCC--CCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCCC--CccchHHHHHHHHhCCcc--------------------
Q 046194 386 LGL--DSD--VSVSNALLSLYADAGYLSRCLKVFFLMPEH--DQVSWNSVIGAFADSEAL-------------------- 439 (934)
Q Consensus 386 ~g~--~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~-------------------- 439 (934)
.|+ -+| ...|++|.+.|.+.|.++.|..+|++.... .+.-|+.+..+|++-...
T Consensus 238 ~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~ 317 (835)
T KOG2047|consen 238 GGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV 317 (835)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh
Confidence 222 223 246788888888888888888888765432 223344444444332111
Q ss_pred -HHHHHHHHHHHHHcC-C-------CCCcccHHHHH-HHHhccCCchHHHHHHHHHHHhcCC-----CchhHHHHHHHHH
Q 046194 440 -VSEAVKYYLDMRRAG-W-------SPNGVTFINIL-AAASSFSMGKLGHQVHAQVIKYNVA-----NETTIENALLSCY 504 (934)
Q Consensus 440 -~~~A~~l~~~m~~~g-~-------~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~g~~-----~~~~~~~~li~~~ 504 (934)
++-.+.-|+.+...+ + .-|.......+ +.-...|+..+....+.++++.--+ .-...|..+.+.|
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHH
Confidence 011222222222211 0 00111111111 1111234445555566666553111 1234678899999
Q ss_pred HhcCCHHHHHHHHHhhccCC--C----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC----------CC-------CH
Q 046194 505 GKCGEMDDCEKIFARMSERR--D----EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ----------RL-------DH 561 (934)
Q Consensus 505 ~~~g~~~~A~~~~~~~~~~p--~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----------~p-------~~ 561 (934)
-..|+++.|+.+|++...-| . ...|..-...-.++.+++.|+++.+.....-- .| +.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 99999999999999988753 2 23466666666778899999998877653211 11 12
Q ss_pred hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC----CCCcc-cccHHHHH
Q 046194 562 FTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP----VRNVY-SWNSMISG 636 (934)
Q Consensus 562 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~ 636 (934)
..|+..++.--..|-++..+.+++.++...+.....+.| ..-.+-...-++++.+++++-. -|++. .|+.-+.-
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 334444444556678888889999998876653332222 2223455667899999998765 35554 78877666
Q ss_pred HHH---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-H-HhhCcHHHHHHHHHHhHH--------------------h
Q 046194 637 YAR---HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA-C-SHAGLVDEGFKHFKSMSQ--------------------V 691 (934)
Q Consensus 637 ~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~-~~~g~~~~a~~~~~~m~~--------------------~ 691 (934)
+.+ .-..+.|..+|++..+ |.+|...-+..|+-| + ..-|....|+.++++... .
T Consensus 557 fi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~ 635 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEI 635 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 554 2358999999999999 677775443334333 2 345788888888877654 2
Q ss_pred hCCCCCcccHHHH----------------HHHHhhcCChHHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhccCCCcHHH
Q 046194 692 YGLIPQLEQFSCM----------------VDLLGRAGELDKIEEFINKM-P-ITP--NSLIWRTVLGACCRANCRKTELG 751 (934)
Q Consensus 692 ~~~~p~~~~y~~l----------------i~~l~~~g~~~~A~~~~~~m-~-~~p--~~~~~~~ll~~~~~~~~~~~~~a 751 (934)
||+.-+...|.-- .++=++.|..+.|..++.-. . ..| +...|.+.-.-=.+| ||-+.-
T Consensus 636 yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrH--GnedT~ 713 (835)
T KOG2047|consen 636 YGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRH--GNEDTY 713 (835)
T ss_pred hCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhc--CCHHHH
Confidence 4554444444432 23335668888888887655 1 233 566788887777788 885555
Q ss_pred HHHHHHH
Q 046194 752 RKAANML 758 (934)
Q Consensus 752 ~~~~~~~ 758 (934)
+.+.+.-
T Consensus 714 keMLRik 720 (835)
T KOG2047|consen 714 KEMLRIK 720 (835)
T ss_pred HHHHHHH
Confidence 5554433
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=2.7e-09 Score=109.28 Aligned_cols=197 Identities=13% Similarity=0.069 Sum_probs=163.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA 671 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 671 (934)
....+..+...|...|++++|.+.|++... | +...+..+...|...|++++|++.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677788899999999999999987653 3 45578888889999999999999999998853 2345567777888
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~ 749 (934)
+...|++++|.+.|+...+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+... |+.+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR--GQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc--CCHH
Confidence 99999999999999999873222223556778899999999999999999887 4444 456788888888888 9999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.|...++++.+..|.++..+..++.++...|++++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999898888999999999999999999998887764
No 58
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=3.8e-06 Score=91.04 Aligned_cols=257 Identities=14% Similarity=0.157 Sum_probs=153.3
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHH
Q 046194 503 CYGKCGEMDDCEKIFARMSERRDEV--SWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERG 580 (934)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 580 (934)
+-.....+.+|..+++.+..+ ++. -|..+..-|+..|+++.|.++|.+.- .++-.|..|.+.|.++.|
T Consensus 741 aai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 334445566666666655554 222 23444455666666666666654321 233345556666666665
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046194 581 MEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLP 660 (934)
Q Consensus 581 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 660 (934)
.++-.+. .|.+..+..|-+-..-+-+.|++.+|.+++-.+..|+. .|..|-++|..+..+++.++- .|
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~ 878 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HG 878 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Ch
Confidence 5544332 12233444555555556778888888888888877765 477888888888888877653 44
Q ss_pred C--hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCC-C---CHHHHH
Q 046194 661 D--HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPIT-P---NSLIWR 734 (934)
Q Consensus 661 ~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~-p---~~~~~~ 734 (934)
| ..|...+..-+...|++..|..-|-+... |.+-+++|-..+.|++|..+-+.-+-. . -...|.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA 948 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 4 35666677778888888888887765543 567788888888888888887665211 1 112231
Q ss_pred H------HHHHHHhccCCCcHHHHHH------HHHHHhc-----CCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 735 T------VLGACCRANCRKTELGRKA------ANMLFEM-----EPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 735 ~------ll~~~~~~~~~~~~~a~~~------~~~~~~~-----~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
- -...+.++ |-++.|... ++-++++ ...-+..+..++.-+-..|++++|.+-+-+..
T Consensus 949 ksiggdaavkllnk~--gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKH--GLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HhhCcHHHHHHHHhh--hhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 1 12223334 444444431 1222221 23345677888888999999999976655443
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=2.7e-08 Score=108.89 Aligned_cols=244 Identities=16% Similarity=0.167 Sum_probs=161.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhccC---------CCcch-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH
Q 046194 494 TTIENALLSCYGKCGEMDDCEKIFARMSER---------RDEVS-WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT 563 (934)
Q Consensus 494 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 563 (934)
..+...|..+|...|+++.|..+|....+. |.+.+ .+.+...|...+++++|..+|.++..-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 345555777888888888888887765442 11111 122334455555666666555555431
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCCh
Q 046194 564 FATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHG 643 (934)
Q Consensus 564 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 643 (934)
.........+.-..+++.|..+|.+.|++++|...+
T Consensus 271 --------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~------------------------ 306 (508)
T KOG1840|consen 271 --------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC------------------------ 306 (508)
T ss_pred --------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHH------------------------
Confidence 000000011112445666777888999998888866
Q ss_pred HHHHHHHHHHHHCCCC-CCh-hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhC--CCCC----cccHHHHHHHHhhcCChH
Q 046194 644 DKALTLFSQMKLDGPL-PDH-VTFVGVLSACSHAGLVDEGFKHFKSMSQVYG--LIPQ----LEQFSCMVDLLGRAGELD 715 (934)
Q Consensus 644 ~~A~~l~~~m~~~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~li~~l~~~g~~~ 715 (934)
++|++++++ ..|.. |.. .-++.+...|...+.+++|..+++...+.+. ..++ ..+|+.|..+|-..|+++
T Consensus 307 e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 307 ERALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 456777777 22222 332 2366666678899999999999888776544 2222 467899999999999999
Q ss_pred HHHHHHHhC---------CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHc
Q 046194 716 KIEEFINKM---------PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEM----EPQN---AVNYVLLANMYAS 778 (934)
Q Consensus 716 ~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~y~~l~~~~~~ 778 (934)
+|.+++++. +..+. ...++.|..+|... ++.+.|.+.+.....+ .|+. ...|..|+-+|.+
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~--k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~ 462 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL--KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA 462 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 999999876 12232 44677888888888 8888888888765543 3444 4468899999999
Q ss_pred CCChHHHHHHHHHHH
Q 046194 779 GGKWEDVAKARKAMK 793 (934)
Q Consensus 779 ~g~~~~a~~~~~~m~ 793 (934)
.|++++|.++.....
T Consensus 463 ~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 463 QGNYEAAEELEEKVL 477 (508)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999877664
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1e-06 Score=89.65 Aligned_cols=301 Identities=9% Similarity=-0.017 Sum_probs=207.2
Q ss_pred CCCcccHHHHHHHHhc--cCCchHHHHHHHHHH-HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHH--
Q 046194 456 SPNGVTFINILAAASS--FSMGKLGHQVHAQVI-KYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWN-- 530 (934)
Q Consensus 456 ~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-- 530 (934)
.|...+....+.+++. .++-..+.+.+..+. ..-++.+.....++.+.|...|+.++|...|++...- |..+..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-dpy~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-NPDNVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-ChhhhhhH
Confidence 3444444445555443 344444445554443 3456677788899999999999999999999988765 333222
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 046194 531 -SMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKC 609 (934)
Q Consensus 531 -~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 609 (934)
...-.+.+.|+.++-..+...+.... +-....|..-....-...+++.|+.+-+..++.... ++..+-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 22233567888888888777776532 112222222233334566777888777777664321 233333333556778
Q ss_pred CCHHHHHHHhccCC--C-CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-hhCcHHHHHHH
Q 046194 610 GRIDYASRFFDLMP--V-RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVL-SACS-HAGLVDEGFKH 684 (934)
Q Consensus 610 g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~ 684 (934)
|+.++|.--|.... . -+..+|.-|+.+|...|++.+|..+-+..... +.-+..+...+. ..|. ....-++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999998888654 3 47789999999999999999999888876653 233455554332 2332 33446788888
Q ss_pred HHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 685 FKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 685 ~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
+++-.+ +.|+ ....+.+...+.+.|+.+++..++++. ...||...-+.|...++.. +.++.+...+..++.++
T Consensus 427 ~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~--Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 427 AEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQ--NEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHh--hhHHHHHHHHHHHHhcC
Confidence 887754 6787 667778888999999999999999886 7788988888999998888 89999999999999999
Q ss_pred CCC
Q 046194 763 PQN 765 (934)
Q Consensus 763 p~~ 765 (934)
|+|
T Consensus 502 P~~ 504 (564)
T KOG1174|consen 502 PKS 504 (564)
T ss_pred ccc
Confidence 987
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=1.5e-07 Score=92.82 Aligned_cols=185 Identities=13% Similarity=0.119 Sum_probs=109.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHH--------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNS--------MISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLS 569 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~--------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 569 (934)
..|+..|-+..++++|.++-+++..- +...++. +...+....+.+.|..++.+..+.. |+
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~--------- 212 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KK--------- 212 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--cc---------
Confidence 46788899999999999998877664 3333433 3344444556666666666655432 22
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcc----cccHHHHHHHHcCChHH
Q 046194 570 ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVY----SWNSMISGYARHGHGDK 645 (934)
Q Consensus 570 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~ 645 (934)
.+...-.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++
T Consensus 213 -------------------------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 213 -------------------------CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred -------------------------ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 2222233455566667777777777766644432 45567778888888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHh---hcCChHHHHHHHH
Q 046194 646 ALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLG---RAGELDKIEEFIN 722 (934)
Q Consensus 646 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~---~~g~~~~A~~~~~ 722 (934)
.+..+.++.+....++ .-..+-.--....-.+.|..+..+-.. -+|+...+..+++.-. ..|+..+.+.+++
T Consensus 268 ~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr 342 (389)
T COG2956 268 GLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGRAKESLDLLR 342 (389)
T ss_pred HHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccchhhhHHHHH
Confidence 8888888777433333 222232222222334445444433332 3588777777777653 2345566666666
Q ss_pred hC
Q 046194 723 KM 724 (934)
Q Consensus 723 ~m 724 (934)
+|
T Consensus 343 ~m 344 (389)
T COG2956 343 DM 344 (389)
T ss_pred HH
Confidence 66
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.04 E-value=3.5e-07 Score=93.20 Aligned_cols=285 Identities=11% Similarity=0.019 Sum_probs=158.1
Q ss_pred CccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046194 437 EALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKI 516 (934)
Q Consensus 437 g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 516 (934)
|++ .+|.++..+-.+.+-.| ...|.....+....|+.+.+.+...++.+..-.++..+.-+........|+.+.|..-
T Consensus 98 G~~-~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDF-QQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcH-HHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 555 66666666544443322 2334444555666677777777777766665556666666777777778888888777
Q ss_pred HHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC
Q 046194 517 FARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEF 594 (934)
Q Consensus 517 ~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 594 (934)
.+++.+. | +.........+|.+.|++.+.+.++.+|.+.|+--|+..-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 7766553 2 566677777888888888888888888887775444321000
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA 671 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 671 (934)
...+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|. ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 11122222222222222222233344433 12333334455555556666666666666666554444 112223
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTEL 750 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~ 750 (934)
+.+-++...=++..+...+.++..| ..+.+|...|.+.+.|.+|.+.|+.. +..|+..+|.-+..++-.. |+.+.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~--g~~~~ 379 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL--GEPEE 379 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc--CChHH
Confidence 4455555555555555555433333 44555666666666666666666544 5556666666565555555 55555
Q ss_pred HHHHHHHHH
Q 046194 751 GRKAANMLF 759 (934)
Q Consensus 751 a~~~~~~~~ 759 (934)
|....+..+
T Consensus 380 A~~~r~e~L 388 (400)
T COG3071 380 AEQVRREAL 388 (400)
T ss_pred HHHHHHHHH
Confidence 555555444
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=3.1e-06 Score=93.27 Aligned_cols=441 Identities=11% Similarity=0.067 Sum_probs=255.6
Q ss_pred cCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 046194 286 GLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGK---DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLIS 362 (934)
Q Consensus 286 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 362 (934)
.+..|..+|..|.-+...+|+++.+.+.|++...- ....|+.+-..|...|.-..|+.+++.-....-.|+..+-..
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 45678999999999999999999999999887542 456899999999999999999999988766443354444433
Q ss_pred HH-HHhh-ccCchHHHHHHHHHHhhhC--C--CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhC
Q 046194 363 TL-SSCA-SLGWIMLGQQIHGEGLKLG--L--DSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADS 436 (934)
Q Consensus 363 ll-~a~~-~~~~~~~a~~i~~~~~~~g--~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 436 (934)
+. +-|. +.+..+++...-..++... . ......+-.+.-+|...-. ...++.- +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~se------R~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKSE------RD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChHH------HH
Confidence 33 3343 4455566555554444411 1 0111222222222221100 0001100 00
Q ss_pred CccHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046194 437 EALVSEAVKYYLDMRRAG-WSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEK 515 (934)
Q Consensus 437 g~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 515 (934)
... .++++.+++..+.+ -.|+...|.++- ++-.++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.
T Consensus 458 ~~h-~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 458 ALH-KKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHH-HHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 111 67788888877643 445555554443 44567788888888888888777788888888888888888888888
Q ss_pred HHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHH--
Q 046194 516 IFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQR--GQRLDHFTFATVLSACASVATLERGMEVHACGVR-- 589 (934)
Q Consensus 516 ~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-- 589 (934)
+.+...+. | |.+....-|..-..-++.++|+.....+..- ...|=.. .++-....+....+.-
T Consensus 535 vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~-----------~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 535 VVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQ-----------TLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred HHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhh-----------hhhhhhhhhhhcccccCc
Confidence 88766553 2 1111112222223356667776666655431 0000000 0000000000000000
Q ss_pred hCCCCcHhHHHHHHHHHH---hcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 046194 590 ACLEFDVVIGSALVDMYS---KCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFV 666 (934)
Q Consensus 590 ~~~~~~~~~~~~li~~y~---~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 666 (934)
....-.+.++..+..... +.-..+.....+...+.|+. +|..+ ...|.
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~-~~~~~----------------------------~~lwl 654 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS-LWYLL----------------------------QKLWL 654 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc-hHHHH----------------------------HHHHH
Confidence 000001111111111100 00000000000111111111 11110 11244
Q ss_pred HHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 046194 667 GVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRA 743 (934)
Q Consensus 667 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 743 (934)
.....+...+..++|...+.+... +.|- ...|.-....+...|.++||.+.|... .+.|+ +.+..+|...+...
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 444556777778888877777654 3343 566666778888889999999888776 67776 45777788888787
Q ss_pred cCCCcHHHHH--HHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 744 NCRKTELGRK--AANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 744 ~~~~~~~a~~--~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|+-..++. +...+++++|.++..|..|+.++-+.|+.++|.+-+....+
T Consensus 732 --G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 732 --GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred --CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 88777777 88999999999999999999999999999999998886653
No 64
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=0.0001 Score=80.28 Aligned_cols=534 Identities=12% Similarity=0.047 Sum_probs=269.6
Q ss_pred HHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHH
Q 046194 162 ISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGF 241 (934)
Q Consensus 162 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 241 (934)
|.+......|.+|+.+++.++... .-.--|.-+..-+++.|+++. +.+++... ..++-.|.+|
T Consensus 739 ieaai~akew~kai~ildniqdqk------~~s~yy~~iadhyan~~dfe~--ae~lf~e~---------~~~~dai~my 801 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK------TASGYYGEIADHYANKGDFEI--AEELFTEA---------DLFKDAIDMY 801 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc------cccccchHHHHHhccchhHHH--HHHHHHhc---------chhHHHHHHH
Confidence 344555667777777777776652 234456666677777777665 66555432 3466778888
Q ss_pred HhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCCC
Q 046194 242 ARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKD 321 (934)
Q Consensus 242 ~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 321 (934)
.++|++++|.++-++...|. .....|-+-..-+-+.|++.+|.+++-.+..|+
T Consensus 802 ~k~~kw~da~kla~e~~~~e---------------------------~t~~~yiakaedldehgkf~eaeqlyiti~~p~ 854 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHGPE---------------------------ATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD 854 (1636)
T ss_pred hccccHHHHHHHHHHhcCch---------------------------hHHHHHHHhHHhHHhhcchhhhhheeEEccCch
Confidence 88888888888876654332 122233333344456677777777776666665
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q 046194 322 SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSL 401 (934)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 401 (934)
. -|..|-+.|..+..+++..+-.-.- -..|-..+-.-+-..|++..|+.-|-..- -+.+-++|
T Consensus 855 ~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnm 917 (1636)
T KOG3616|consen 855 K-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNM 917 (1636)
T ss_pred H-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHH
Confidence 3 4556667777777776665533211 12344444455556677776665543322 25566777
Q ss_pred HHhcCChHHHHHHHhhCCCCCc-----cchHH-------------------HHHHHHhCCccHHHHHHHHHHHHHcCCCC
Q 046194 402 YADAGYLSRCLKVFFLMPEHDQ-----VSWNS-------------------VIGAFADSEALVSEAVKYYLDMRRAGWSP 457 (934)
Q Consensus 402 y~~~g~~~~A~~~f~~~~~~~~-----~~~~~-------------------li~~~~~~g~~~~~A~~l~~~m~~~g~~p 457 (934)
|-..+-+++|.++-+.-...|. ..|.- -|..-+.++-+ +-|.++-+--.+.. .|
T Consensus 918 yk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~af-d~afdlari~~k~k-~~ 995 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAF-DFAFDLARIAAKDK-MG 995 (1636)
T ss_pred hhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccch-hhHHHHHHHhhhcc-Cc
Confidence 7777777777776554322211 11211 11111222222 33333322221111 11
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHH----------------------hcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046194 458 NGVTFINILAAASSFSMGKLGHQVHAQVIK----------------------YNVANETTIENALLSCYGKCGEMDDCEK 515 (934)
Q Consensus 458 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----------------------~g~~~~~~~~~~li~~~~~~g~~~~A~~ 515 (934)
.. ...+...+...|.++.|..-+-+.++ .|-.|. .-+.|+.+..++..|.+
T Consensus 996 ~v--hlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe-----~av~mfi~dndwa~aer 1068 (1636)
T KOG3616|consen 996 EV--HLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPE-----EAVEMFIHDNDWAAAER 1068 (1636)
T ss_pred cc--hhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChH-----HHHHHhhhcccHHHHHH
Confidence 11 11122223445666666554444433 222222 23456777777777777
Q ss_pred HHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHH-----------
Q 046194 516 IFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVH----------- 584 (934)
Q Consensus 516 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~----------- 584 (934)
+-+.-.+..-...++--..+-...|++-+|..++-+. -+|+. .++.+...+.+..|+++-
T Consensus 1069 vae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra----nkp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~i 1139 (1636)
T KOG3616|consen 1069 VAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA----NKPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAI 1139 (1636)
T ss_pred HHHhhChhhhHHHHhhhhhccccccchhhhhhheeec----CCCch-----HHHHHHHhccChHHHHHHHhhChhHHHHH
Confidence 6654433200111222223333445554444433221 23332 122222233333332221
Q ss_pred -----HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---------------------------CCcccccH
Q 046194 585 -----ACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---------------------------RNVYSWNS 632 (934)
Q Consensus 585 -----~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------------------------~~~~~~~~ 632 (934)
....+.|-. .+..+.+-..-+-..|++..|...+-.+.. .|.....+
T Consensus 1140 qeeyek~~~k~gar-gvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~a 1218 (1636)
T KOG3616|consen 1140 QEEYEKEALKKGAR-GVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGA 1218 (1636)
T ss_pred HHHHHHHHHhcccc-ccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHh
Confidence 122233322 233333444455666777776665544421 11122222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhH---------------HhhCCCCC
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMS---------------QVYGLIPQ 697 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---------------~~~~~~p~ 697 (934)
...++...|..+.|-+++--.-. -.-.|.+++....|.+|.++-++.. +..|--..
T Consensus 1219 a~~al~~~~~~e~aael~l~f~~---------~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~e 1289 (1636)
T KOG3616|consen 1219 AGGALDEAGCHEAAAELLLLFDL---------SKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDE 1289 (1636)
T ss_pred cchhhhcccccHHHHHHHHHhhh---------HHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCcccc
Confidence 22233333444444433322110 1123556666666666666544332 21111111
Q ss_pred --cccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHH-HhcCCCCCchHHHHH-
Q 046194 698 --LEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANML-FEMEPQNAVNYVLLA- 773 (934)
Q Consensus 698 --~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~-~~~~p~~~~~y~~l~- 773 (934)
-.-.-+-++++...|+|++|++.-++-..+|-..-|.++-.+...|. |+...+..++++- -.-+|.|-.+|-.+.
T Consensus 1290 li~vdviaaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~-~d~aq~lal~~q~ga~anpanfniyk~i~e 1368 (1636)
T KOG3616|consen 1290 LIDVDVIAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHE-GDLAQALALLEQHGAPANPANFNIYKLIFE 1368 (1636)
T ss_pred ccchhHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHhCCCCCcccccHHHHHHH
Confidence 01123457889999999999998888778887777777777766664 8888887777653 334677777776443
Q ss_pred HHHHcCC-ChHHH
Q 046194 774 NMYASGG-KWEDV 785 (934)
Q Consensus 774 ~~~~~~g-~~~~a 785 (934)
+.+++-| +..+|
T Consensus 1369 d~lakpgt~~~ea 1381 (1636)
T KOG3616|consen 1369 DMLAKPGTNCAEA 1381 (1636)
T ss_pred HHhcCCCcchHHH
Confidence 4455544 44444
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.99 E-value=1.3e-05 Score=86.32 Aligned_cols=489 Identities=11% Similarity=0.068 Sum_probs=295.1
Q ss_pred HHHHHHHHhhccCChhHHHHHHhcCCC-----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 046194 293 VGNGLVNMYAKCGTIDDSRSVFRFMIG-----KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSC 367 (934)
Q Consensus 293 ~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 367 (934)
++-..+....+.|++...+..|++... .....|...+.-..+.|-++-++.+|++.++ +.|.. -.-.+.-+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~--~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEA--REEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHH--HHHHHHHH
Confidence 455666778899999999999987633 2456799999999999999999999999987 34443 66677778
Q ss_pred hccCchHHHHHHHHHHhhhC------CCCchhHHHHHHHHHHhcCChH---HHHHHHhhCCCC--C--ccchHHHHHHHH
Q 046194 368 ASLGWIMLGQQIHGEGLKLG------LDSDVSVSNALLSLYADAGYLS---RCLKVFFLMPEH--D--QVSWNSVIGAFA 434 (934)
Q Consensus 368 ~~~~~~~~a~~i~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li~~~~ 434 (934)
+..++++++.+.+..++... .+.+...|.-+-+..++.-+.- ....+++.+..+ | ...|++|..-|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 88999999998888776431 2455667777777666654332 334455555442 3 347999999999
Q ss_pred hCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCc----------------------hHHHHHHHHHHHhcC--
Q 046194 435 DSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMG----------------------KLGHQVHAQVIKYNV-- 490 (934)
Q Consensus 435 ~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~----------------------~~a~~i~~~~~~~g~-- 490 (934)
+.|.+ ++|..+|++-.+.-. +...|+.+..+|+..... +....-++.+...+.
T Consensus 260 r~g~~-ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 260 RSGLF-EKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred Hhhhh-HHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 99999 999999998876532 334455555555432211 111111222221111
Q ss_pred ---------CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--C------CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046194 491 ---------ANETTIENALLSCYGKCGEMDDCEKIFARMSER--R------DEVSWNSMISGYIHNELLPKAMNLVWFMM 553 (934)
Q Consensus 491 ---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 553 (934)
+.++..|..-+. ...|+..+-...+.+...+ | -...|..+...|-.+|+.+.|..+|++..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 011111111111 1124444445555544432 2 12246677777777777777777777765
Q ss_pred HcCCCCC---HhHHHHHHHHHhchhhHHHHHHHHHHHHHh-----------CCCC------cHhHHHHHHHHHHhcCCHH
Q 046194 554 QRGQRLD---HFTFATVLSACASVATLERGMEVHACGVRA-----------CLEF------DVVIGSALVDMYSKCGRID 613 (934)
Q Consensus 554 ~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----------~~~~------~~~~~~~li~~y~~~g~~~ 613 (934)
....+-- ..+|..-...=.+..+++.|..+.+.+... +.++ +..+++-+++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 5322111 112222222222344566666666554321 1111 2333444555555666677
Q ss_pred HHHHHhccCCCCCcccccHHHH---HHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHh---hCcHHHHHHHHH
Q 046194 614 YASRFFDLMPVRNVYSWNSMIS---GYARHGHGDKALTLFSQMKLDGPLPDH-VTFVGVLSACSH---AGLVDEGFKHFK 686 (934)
Q Consensus 614 ~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~---~g~~~~a~~~~~ 686 (934)
....+++.+.+--+.|=..+++ -+-.+.-++++.+.|++-+..=--|+. ..|+..|.-+.+ .-.++.|..+|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7777777665433332222222 122455677788777765554333553 345555554332 346899999999
Q ss_pred HhHHhhCCCCC--cccHHHHHHHHhhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 687 SMSQVYGLIPQ--LEQFSCMVDLLGRAGELDKIEEFINKM--PITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 687 ~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
+..+ +.+|. ...|-.....=-+.|....|++++++. ++++. ...|+..+.-.... =-+.....+++++++
T Consensus 575 qaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~--yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 575 QALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEI--YGVPRTREIYEKAIE 650 (835)
T ss_pred HHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH--hCCcccHHHHHHHHH
Confidence 9988 67666 223333344445678999999999998 44543 34788888755544 345667889999999
Q ss_pred cCCCCCch--HHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 761 MEPQNAVN--YVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 761 ~~p~~~~~--y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.-|++-.- -.-.+++-.+.|..+.|..++..-.+
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 98876443 34567888899999999888765443
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.98 E-value=3.2e-07 Score=93.50 Aligned_cols=249 Identities=15% Similarity=0.134 Sum_probs=169.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 046194 539 NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRF 618 (934)
Q Consensus 539 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 618 (934)
.|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.++.+.--+++..++-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777755554333 2344455556666777777777777777654455666666677777777777777766
Q ss_pred hccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhhCcHHHHHHHHHHh
Q 046194 619 FDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDH-------VTFVGVLSACSHAGLVDEGFKHFKSM 688 (934)
Q Consensus 619 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~m 688 (934)
.++.. ..+.........+|.+.|++.+...++.+|.+.|.--|. .++..++.-+.+.+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66543 345667777778888888888888888888887765543 34677777777766666666677777
Q ss_pred HHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 689 SQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 689 ~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
..+ .+-++..-.+++.-+.++|+.++|.+++++. +-.-|+. .. .+..+..- ++.+.-++.+++-.+..|++|.
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~-~~~~~l~~--~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC-RLIPRLRP--GDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH-HHHhhcCC--CCchHHHHHHHHHHHhCCCChh
Confidence 663 4455666677777888888888888887766 2222222 22 22233344 6777777788888888888888
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 768 NYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 768 ~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.+..|+.+|.+.+.|.+|.+.++...+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 888888888888888888887775543
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=2.7e-08 Score=97.62 Aligned_cols=229 Identities=14% Similarity=0.140 Sum_probs=173.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchh
Q 046194 497 ENALLSCYGKCGEMDDCEKIFARMSE-RRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVA 575 (934)
Q Consensus 497 ~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 575 (934)
-+.+..+|.+.|.+.+|.+.|+.-.. .|-+.||-.|-..|.+-.+++.|+.+|.+-.+ ..|-.+||..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~--------- 294 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLL--------- 294 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhh---------
Confidence 35677888888888888888877555 36777888888888888888888888887765 3565555532
Q ss_pred hHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHH
Q 046194 576 TLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQ 652 (934)
Q Consensus 576 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 652 (934)
-....+-..++.++|.++++...+ .|+.+..++..+|.-.++++-|+..|++
T Consensus 295 -------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 295 -------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred -------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 223334444566666666665543 3566777788888889999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHH
Q 046194 653 MKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLI 732 (934)
Q Consensus 653 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~ 732 (934)
+.+.|+. +...|..+.-+|...+.+|-++..|++.... --.| ++| ..+
T Consensus 350 iLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~------------------~~a------------aDv 397 (478)
T KOG1129|consen 350 ILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQP------------------GQA------------ADV 397 (478)
T ss_pred HHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCc------------------chh------------hhh
Confidence 9998854 4567888888888888888888887777652 1111 111 335
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
|-.|....... ||+..|.+.++.++.-+|++...|+.|+-+-.+.|+.++|..++...++.
T Consensus 398 WYNlg~vaV~i--GD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 398 WYNLGFVAVTI--GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhccceeEEec--cchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 66666666666 99999999999999999999999999999999999999999998887754
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=98.97 E-value=8.8e-08 Score=110.56 Aligned_cols=242 Identities=12% Similarity=0.016 Sum_probs=173.6
Q ss_pred hhHHHHHHHHHHHcCCCCCH-hHHHHHHHHHh---------chhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 046194 542 LPKAMNLVWFMMQRGQRLDH-FTFATVLSACA---------SVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGR 611 (934)
Q Consensus 542 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 611 (934)
.++|+.+|++.... .|+. ..+..+..++. ..+++++|...++.+++... .+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 45677777776653 4543 23333322222 23457788888888877532 266777788888899999
Q ss_pred HHHHHHHhccCCC--CC-cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhhCcHHHHHHHHHH
Q 046194 612 IDYASRFFDLMPV--RN-VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHV-TFVGVLSACSHAGLVDEGFKHFKS 687 (934)
Q Consensus 612 ~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 687 (934)
+++|...|++... |+ ...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999998763 43 457888889999999999999999999984 56643 333444456678999999999999
Q ss_pred hHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 688 MSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIW-RTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 688 m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
..+. ..|+ +..+..+..+|...|++++|.+.+++. +..|+.... +.+...+... | +.+...++.+++..-.
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN--S--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc--H--HHHHHHHHHHHHHhhH
Confidence 8763 3354 556778889999999999999999987 556665544 4444455555 5 5788888887776655
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 765 NAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 765 ~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.+..+..+..+|.-.|+-+.+..+ +++.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 555555688899999999998877 666543
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=7.5e-07 Score=92.67 Aligned_cols=215 Identities=7% Similarity=-0.002 Sum_probs=103.1
Q ss_pred CccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046194 437 EALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKI 516 (934)
Q Consensus 437 g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 516 (934)
|+. ..|..-|+..+.....++.. |.-+-.++....+.++..+.|....+... -++.+|.--.+++.-.+++++|..-
T Consensus 340 g~~-~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 340 GDS-LGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CCc-hhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHH
Confidence 444 45555555554433222221 33333344444444444444444433321 1233334444455555566666666
Q ss_pred HHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC-
Q 046194 517 FARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLE- 593 (934)
Q Consensus 517 ~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~- 593 (934)
|+....- | ++..|-.+-.+.-+.++++++...|++.... .+-....|+.....+...++++.|.+.++.+++....
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 6655542 2 3444444444444555666666666665553 3333344555555555555555555555554442111
Q ss_pred ------CcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHH
Q 046194 594 ------FDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFV 666 (934)
Q Consensus 594 ------~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 666 (934)
+.+.+.-+++-.- -.+++.+|+.++++..+. .|- ...|.
T Consensus 496 ~~~~v~~~plV~Ka~l~~q--------------------------------wk~d~~~a~~Ll~KA~e~--Dpkce~A~~ 541 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQ--------------------------------WKEDINQAENLLRKAIEL--DPKCEQAYE 541 (606)
T ss_pred ccccccchhhhhhhHhhhc--------------------------------hhhhHHHHHHHHHHHHcc--CchHHHHHH
Confidence 0111111111111 125566666666666663 333 45566
Q ss_pred HHHHHHHhhCcHHHHHHHHHHhH
Q 046194 667 GVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 667 ~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
+|...-.+.|+.++|+++|+...
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666667766666653
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=6.9e-06 Score=87.85 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=116.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCC-cccccHHHH-HHH-HcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHh
Q 046194 600 SALVDMYSKCGRIDYASRFFDLMPVRN-VYSWNSMIS-GYA-RHGHGDKALTLFSQMKLDGPLPDH--VTFVGVLSACSH 674 (934)
Q Consensus 600 ~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~-~~~-~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 674 (934)
++++.+|. +..+.+.++-...+... ...+.+++. ++. +...+.+|.+++.+.-+. .|+. +.....+.....
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 45666665 44566677666665322 223333333 332 233577888888877664 4554 333344455778
Q ss_pred hCcHHHHHHHHH--------HhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC--------CCCCCH-HHHHHHH
Q 046194 675 AGLVDEGFKHFK--------SMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM--------PITPNS-LIWRTVL 737 (934)
Q Consensus 675 ~g~~~~a~~~~~--------~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m--------~~~p~~-~~~~~ll 737 (934)
.|+++.|.+++. .+.+ .+. .+.+...++.++.+.++-+-|.+++.+. .-.+.. .+|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999998 4443 133 3456677888999888877776666554 222322 2344444
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
..-.++ |+.++|...++.+.+.+|++....+.++-.|++.. .+.|..+
T Consensus 466 ~f~lr~--G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 466 EFKLRH--GNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHHHhc--CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 444456 99999999999999999999999999999998774 4455444
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=1.6e-07 Score=99.06 Aligned_cols=210 Identities=14% Similarity=0.049 Sum_probs=150.5
Q ss_pred hhHHHHHHHHHHHHHh-CCCC--cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHH
Q 046194 575 ATLERGMEVHACGVRA-CLEF--DVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALT 648 (934)
Q Consensus 575 ~~~~~a~~i~~~~~~~-~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 648 (934)
+..+.+..-+..++.. ...| ....+..+...|.+.|+.++|...|+...+ | +...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455666666666643 2233 245677788889999999999999987763 3 45689999999999999999999
Q ss_pred HHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC--C
Q 046194 649 LFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM--P 725 (934)
Q Consensus 649 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m--~ 725 (934)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 5676 56677788888999999999999999876 4455332222233445678899999999764 3
Q ss_pred CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 726 ITPNSLIWRTVLGACCRANCRKTELGRKAANMLF-------EMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 726 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
..|+...|. +.. ... |+...+. +++.+. ++.|+.+..|..++.+|...|++++|...+++..+.
T Consensus 195 ~~~~~~~~~-~~~--~~l--g~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 195 LDKEQWGWN-IVE--FYL--GKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred CCccccHHH-HHH--HHc--cCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344433332 222 223 5554432 333333 556677789999999999999999999999888753
No 72
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=0.0005 Score=78.04 Aligned_cols=327 Identities=12% Similarity=0.148 Sum_probs=201.3
Q ss_pred HHHHHHHhhhCCC--CchhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCcc-----chHHHHHHHHhCCccHHHHHHHHH
Q 046194 377 QQIHGEGLKLGLD--SDVSVSNALLSLYADAGYLSRCLKVFFLMP-EHDQV-----SWNSVIGAFADSEALVSEAVKYYL 448 (934)
Q Consensus 377 ~~i~~~~~~~g~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~~~~-----~~~~li~~~~~~g~~~~~A~~l~~ 448 (934)
+++.+..+..+++ .|+.-.+.-+.++...+-..+-.++++++. ++++. .-|.||-.-.+... ....+..+
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~--trVm~YI~ 1044 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR--TRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh--HHHHHHHH
Confidence 4555666665543 355556666777778888888888887765 23222 23444444444333 45666665
Q ss_pred HHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcch
Q 046194 449 DMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVS 528 (934)
Q Consensus 449 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~ 528 (934)
++-.-. --.+...+...+-+++|..+|... ..+....+.||+ .-+.++.|.+.-++.. ....
T Consensus 1045 rLdnyD-------a~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n---~p~v 1106 (1666)
T KOG0985|consen 1045 RLDNYD-------APDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN---EPAV 1106 (1666)
T ss_pred HhccCC-------chhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC---ChHH
Confidence 553221 112333445555566676666543 223333333433 3566777777776665 3467
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 046194 529 WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSK 608 (934)
Q Consensus 529 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 608 (934)
|..+..+-.+.|...+|++-|-+. -|+..|.-+++++.+.|.++.-.+++..+.+..-+|.+ -+.||-+|+|
T Consensus 1107 WsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHH
Confidence 888988888889988888877332 35577888999999999999888888888777666544 4578888999
Q ss_pred cCCHHHHHHHhccCCC-----------------------CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 046194 609 CGRIDYASRFFDLMPV-----------------------RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTF 665 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 665 (934)
.+++.+-++.+..-.. .++.-|..|...+...|++..|..--++. .+..||
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 8888877666543210 13445666666677777777666655442 245677
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRA 743 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 743 (934)
.-+-.+|...+.+.-|. |.- .++.-..+-..-++.-|-..|.++|-..+++.. |++. .-..|.-|.-.|.+.
T Consensus 1253 K~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 77777777665554443 222 123334455667788888888888888888765 5443 233455555555544
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.8e-05 Score=84.82 Aligned_cols=364 Identities=14% Similarity=0.058 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHH
Q 046194 215 LQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVG 294 (934)
Q Consensus 215 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 294 (934)
|.+....+...+ +-|...+.+=+-+..+.+.+++|+.+.+.-..... .+.+.
T Consensus 31 a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~--------------------------~~~~~- 82 (652)
T KOG2376|consen 31 AVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV--------------------------INSFF- 82 (652)
T ss_pred HHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh--------------------------cchhh-
Confidence 555555555544 44556677777788888888888866554321100 00000
Q ss_pred HHHHHHhh--ccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccC
Q 046194 295 NGLVNMYA--KCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSS-NFSLISTLSSCASLG 371 (934)
Q Consensus 295 ~~li~~~~--~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~ 371 (934)
+=.+|+ +.+.+|+|...++.....+..+...=...+.+.|++++|+++|+.+.+.+..-- ...-..++.+....
T Consensus 83 --fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l- 159 (652)
T KOG2376|consen 83 --FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL- 159 (652)
T ss_pred --HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-
Confidence 124454 679999999999966555554555556678899999999999999987653321 11112222211110
Q ss_pred chHHHHHHHHHHhhhCCCC--chhHHHHHHHHHHhcCChHHHHHHHhhC--------CCCCc-----cc-----hHHHHH
Q 046194 372 WIMLGQQIHGEGLKLGLDS--DVSVSNALLSLYADAGYLSRCLKVFFLM--------PEHDQ-----VS-----WNSVIG 431 (934)
Q Consensus 372 ~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~~-----~~-----~~~li~ 431 (934)
+. ..+......| +-..+-.....+...|++.+|+++++.. .+.|. .. ---|.-
T Consensus 160 ------~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 160 ------QV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred ------hH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 00 0111111222 1222223445677889999999999876 22111 11 112334
Q ss_pred HHHhCCccHHHHHHHHHHHHHcCCCCCcc---cHHHHHHHHhccCCchHH--HHHHHHHH-----------HhcCCCchh
Q 046194 432 AFADSEALVSEAVKYYLDMRRAGWSPNGV---TFINILAAASSFSMGKLG--HQVHAQVI-----------KYNVANETT 495 (934)
Q Consensus 432 ~~~~~g~~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~a--~~i~~~~~-----------~~g~~~~~~ 495 (934)
.+-..|+. ++|..++...++... +|.. ++..=|.+.....++-.+ ...+.... ...-.....
T Consensus 233 VlQ~~Gqt-~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 233 VLQLQGQT-AEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHhcch-HHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56678999 999999999887643 3332 222223333333333221 11111100 000001111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 046194 496 IENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYI-HNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACAS 573 (934)
Q Consensus 496 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 573 (934)
.-+.++.+|. +..+.++++-...+.. |....=+.+..++. +...+.+|.+++...-+....-.....-..++....
T Consensus 311 ~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 311 RNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 1134444443 4455666666666554 33322233333322 222466777777666554222223444455556677
Q ss_pred hhhHHHHHHHHH--------HHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccC
Q 046194 574 VATLERGMEVHA--------CGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLM 622 (934)
Q Consensus 574 ~~~~~~a~~i~~--------~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 622 (934)
.|+++.|.+++. .+.+.+. .+.+..+++.+|.+.++-+.|..++++.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 888888888877 3333333 3445566777788777777777766553
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.85 E-value=3.1e-07 Score=93.87 Aligned_cols=199 Identities=11% Similarity=0.063 Sum_probs=100.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 046194 526 EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDM 605 (934)
Q Consensus 526 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 605 (934)
...+..+...|...|++++|.+.|++..... +.+...+..+...+...|+++.|.+.+....+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4457777788888888888888888876642 22334455555555566666666666665555321 123344444444
Q ss_pred HHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHH
Q 046194 606 YSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKH 684 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 684 (934)
|...|++++|.+.| ++..+....|. ...+..+...+...|++++|...
T Consensus 109 ~~~~g~~~~A~~~~-------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQF-------------------------------EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHH-------------------------------HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555555444 44443211111 22233344444555555555555
Q ss_pred HHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 685 FKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 685 ~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
|++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+... |+.+.+....+.+.+.
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL--GDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhh
Confidence 5554431 1112334445555555555555555555544 1112 233333444444444 5555555555544443
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=98.84 E-value=1.8e-07 Score=108.01 Aligned_cols=209 Identities=15% Similarity=0.025 Sum_probs=159.7
Q ss_pred hhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHH---------hcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcC
Q 046194 575 ATLERGMEVHACGVRACLEF-DVVIGSALVDMYS---------KCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHG 641 (934)
Q Consensus 575 ~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 641 (934)
+++++|.+.++.+++. .| +...+..+...|. ..+++++|...+++..+ | +...|..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 4567888999988874 34 3445555555443 23458899999988764 3 4568888888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc-ccHHHHHHHHhhcCChHHHHH
Q 046194 642 HGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL-EQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 642 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~~ 719 (934)
++++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+ +.|+. ..+..+...+...|++++|.+
T Consensus 353 ~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 999999999999994 576 45677778889999999999999999976 55663 233445556777899999999
Q ss_pred HHHhC--CCCCCHH-HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 720 FINKM--PITPNSL-IWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 720 ~~~~m--~~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.+++. ...|+.. .+..+...+... |+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~--G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLK--GKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhC--CCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 99887 2245444 455566666667 99999999999999899988888889999999888 477776666654
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.8e-05 Score=79.11 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=121.1
Q ss_pred CHHHHHHHhccCCC----CC-cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 611 RIDYASRFFDLMPV----RN-VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 611 ~~~~A~~~~~~~~~----~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
.+.-|.+.|+-... -| +.--.+|.+.+.-..++++++..++....-=..-|...| .+..|....|.+.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 35567777765432 22 335567888888888899999988888775333344444 4778889999999999999
Q ss_pred HHhHHhhCCCCCcccHHH-HHHHHhhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhccCCCcHHHHHHHHHHHhcCC
Q 046194 686 KSMSQVYGLIPQLEQFSC-MVDLLGRAGELDKIEEFINKMPITPNSLIW-RTVLGACCRANCRKTELGRKAANMLFEMEP 763 (934)
Q Consensus 686 ~~m~~~~~~~p~~~~y~~-li~~l~~~g~~~~A~~~~~~m~~~p~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p 763 (934)
-.+... .+ .+..+|.. |..+|.+.|+.+-|.+++-++....+..+. .....-|.+. +.+=-|-+++..+..++|
T Consensus 417 ~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~--~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKA--NEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHccCC
Confidence 877541 22 34555655 467899999999999999888544444444 4445688888 888888889998888887
Q ss_pred CCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCc
Q 046194 764 QNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAG 802 (934)
Q Consensus 764 ~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 802 (934)
. |..| .|+-....-++..+-....++.|+
T Consensus 493 ~-pEnW---------eGKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 493 T-PENW---------EGKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred C-cccc---------CCccchHHHHHHHHHcCCCCCCch
Confidence 5 3332 244445566666666555555554
No 77
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=7.1e-05 Score=82.76 Aligned_cols=570 Identities=12% Similarity=0.118 Sum_probs=279.6
Q ss_pred chhhhHHHH--HHhhcCChhhHHHhhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHHHHc-C--------CCCCccc
Q 046194 20 VFLCNTLIN--VYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMSNEACKMFKEMVRA-G--------FLLNRYA 88 (934)
Q Consensus 20 ~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g--------~~~~~~~ 88 (934)
..|-..++. .|.-.|+.+.|.+-...+. +-..|..|.+-+.+.++++-|.-.+..|... | -.|+ .+
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~ 802 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-ED 802 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-ch
Confidence 344444443 4666777777766555443 3455777777777777777776666655321 1 1111 11
Q ss_pred HHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCCCCc-ccHHHHHHHHHc
Q 046194 89 LGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDL-ISWNSIISVYSQ 167 (934)
Q Consensus 89 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~-~~~~~li~~~~~ 167 (934)
-..+.-..... |.++.|+.+..+..+.. -|=..|... |.+++|.++-+.-.+-.. .||-.--.-+-.
T Consensus 803 eakvAvLAieL--gMlEeA~~lYr~ckR~D---------LlNKlyQs~-g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 803 EAKVAVLAIEL--GMLEEALILYRQCKRYD---------LLNKLYQSQ-GMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred hhHHHHHHHHH--hhHHHHHHHHHHHHHHH---------HHHHHHHhc-ccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 11111111223 55555555555544432 222334444 666666655443222111 123333333444
Q ss_pred CCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCCh
Q 046194 168 RGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNF 247 (934)
Q Consensus 168 ~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 247 (934)
.++.+.|++.|++- |+ |--..+. +|.- +... .++..+. ..|...|.=-..-+-..|+.
T Consensus 871 r~Di~~AleyyEK~---~~-----hafev~r-mL~e-----~p~~--~e~Yv~~------~~d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKA---GV-----HAFEVFR-MLKE-----YPKQ--IEQYVRR------KRDESLYSWWGQYLESVGEM 928 (1416)
T ss_pred hccHHHHHHHHHhc---CC-----hHHHHHH-HHHh-----ChHH--HHHHHHh------ccchHHHHHHHHHHhcccch
Confidence 56666666666542 11 1000111 1100 0000 1111111 12223333333344456777
Q ss_pred HHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHH
Q 046194 248 YYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNT 327 (934)
Q Consensus 248 ~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 327 (934)
+.|+.+|..... |-++++..+-.|++++|-++-++ ..|......
T Consensus 929 daAl~~Y~~A~D----------------------------------~fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYh 972 (1416)
T KOG3617|consen 929 DAALSFYSSAKD----------------------------------YFSMVRIKCIQGKTDKAARIAEE--SGDKAACYH 972 (1416)
T ss_pred HHHHHHHHHhhh----------------------------------hhhheeeEeeccCchHHHHHHHh--cccHHHHHH
Confidence 777777766542 23556777778999999988775 346677778
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCc----------hhHHHH
Q 046194 328 MISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSD----------VSVSNA 397 (934)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~----------~~~~~~ 397 (934)
+.+-|-..|++.+|+.+|.+.+. |...|+.|...+.-+. +.....-.|...- ..-...
T Consensus 973 laR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~---L~nlal~s~~~d~v~aArYyEe~g~~~~~ 1040 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDR---LANLALMSGGSDLVSAARYYEELGGYAHK 1040 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHH---HHHHHhhcCchhHHHHHHHHHHcchhhhH
Confidence 88999999999999999988753 5566665544332211 1111111111000 001223
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--------------CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHH
Q 046194 398 LLSLYADAGYLSRCLKVFFLMPE--------------HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFI 463 (934)
Q Consensus 398 li~~y~~~g~~~~A~~~f~~~~~--------------~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~ 463 (934)
-+..|-|.|.+.+|+++--+-.+ .|....+-...-++.+.++ ++|..++-..++ |.
T Consensus 1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy-ekAV~lL~~ar~---------~~ 1110 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY-EKAVNLLCLARE---------FS 1110 (1416)
T ss_pred HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH-HHHHHHHHHHHH---------HH
Confidence 45667888888888776333222 2444455555566777777 888887765543 33
Q ss_pred HHHHHHhccCCchHHHHHHHHHH--HhcCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHh
Q 046194 464 NILAAASSFSMGKLGHQVHAQVI--KYNVAN---ETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIH 538 (934)
Q Consensus 464 ~ll~a~~~~~~~~~a~~i~~~~~--~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~ 538 (934)
..+..|... ++.-..++-+.|. +.+.++ ...+...+.+.+.+.|.+..|-+-|.+...+ -.-+.++.+
T Consensus 1111 ~AlqlC~~~-nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLK 1183 (1416)
T KOG3617|consen 1111 GALQLCKNR-NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK------LSAMRALLK 1183 (1416)
T ss_pred HHHHHHhcC-CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH------HHHHHHHHh
Confidence 344444332 2222233333321 112222 1234456677888888888888888776654 123445555
Q ss_pred cCChhHHHH---------H----HHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 046194 539 NELLPKAMN---------L----VWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDM 605 (934)
Q Consensus 539 ~g~~~~A~~---------l----~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 605 (934)
.|+.++..- + -+-++....+-|+.+...++.-|.+...++.--.+++....-. +.-+ .-
T Consensus 1184 SGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiE----iee~----q~ 1255 (1416)
T KOG3617|consen 1184 SGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIE----IEEL----QT 1255 (1416)
T ss_pred cCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhh----HHHH----hh
Confidence 665443110 0 0112222344455555555555555444443333333221110 0000 01
Q ss_pred HH-hcCCHHHHHHHhccCCCCCcc--cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHH
Q 046194 606 YS-KCGRIDYASRFFDLMPVRNVY--SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGF 682 (934)
Q Consensus 606 y~-~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 682 (934)
|. ..|-+++|.+.+.+...+|.. .++.|-.-.+. ...+.-....+.. +..+++
T Consensus 1256 ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~----------------------vk~~l~~~q~~~e--D~~~~i 1311 (1416)
T KOG3617|consen 1256 YDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAK----------------------VKVQLRKLQIMKE--DAADGI 1311 (1416)
T ss_pred hhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH----------------------HHHHHHHHHHhhh--hHHHHH
Confidence 11 134556666666665544421 12222111111 1111112222222 445555
Q ss_pred HHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 683 KHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 683 ~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
.-...|.++ .+-|+ ...|..||..+.+..++..|...+++|
T Consensus 1312 ~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el 1356 (1416)
T KOG3617|consen 1312 RQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTEL 1356 (1416)
T ss_pred HHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 555556554 23232 456777888888888888888888888
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.80 E-value=5.7e-07 Score=98.65 Aligned_cols=243 Identities=16% Similarity=0.177 Sum_probs=151.5
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHhcCCCC----------Ccc-cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh
Q 046194 291 VAVGNGLVNMYAKCGTIDDSRSVFRFMIGK----------DSV-SWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFS 359 (934)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 359 (934)
..+..-|..+|...|+++.|..+|....+. .+. .-+.+...|...+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 445555788888888888888888665321 111 2233445666777777777777776541
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCcc
Q 046194 360 LISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEAL 439 (934)
Q Consensus 360 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 439 (934)
.....-...+.-..+++.|..+|.+.|++++|...+
T Consensus 271 --------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~------------------------ 306 (508)
T KOG1840|consen 271 --------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC------------------------ 306 (508)
T ss_pred --------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHH------------------------
Confidence 111100001112345667777899999999988776
Q ss_pred HHHHHHHHHHHHHcCC-CCCc-ccHHHHHHHHhccCCchHHHHHHHHHHHh---cCCCc----hhHHHHHHHHHHhcCCH
Q 046194 440 VSEAVKYYLDMRRAGW-SPNG-VTFINILAAASSFSMGKLGHQVHAQVIKY---NVANE----TTIENALLSCYGKCGEM 510 (934)
Q Consensus 440 ~~~A~~l~~~m~~~g~-~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~---g~~~~----~~~~~~li~~~~~~g~~ 510 (934)
+.|++++++. .|. .|.. .-++.+...|...+.++++..++....+. -+.++ ..+++.|...|.+.|++
T Consensus 307 -e~Al~I~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 307 -ERALEIYEKL--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred -HHHHHHHHHh--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 6666666662 221 2222 23445556667777777777776654332 12222 35778899999999999
Q ss_pred HHHHHHHHhhccC---------C-CcchHHHHHHHHHhcCChhHHHHHHHHHHH----cCC-CCC-HhHHHHHHHHHhch
Q 046194 511 DDCEKIFARMSER---------R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQ----RGQ-RLD-HFTFATVLSACASV 574 (934)
Q Consensus 511 ~~A~~~~~~~~~~---------p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~p~-~~t~~~ll~a~~~~ 574 (934)
++|+++|+....+ + .....+.|...|.+.+++++|.++|.+-.. -|. .|+ ..+|..|...|...
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 9999999887653 1 233466777888888888888888877433 221 222 25666666777777
Q ss_pred hhHHHHHHHHHHHH
Q 046194 575 ATLERGMEVHACGV 588 (934)
Q Consensus 575 ~~~~~a~~i~~~~~ 588 (934)
|+++.|.++.+.+.
T Consensus 464 g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 464 GNYEAAEELEEKVL 477 (508)
T ss_pred ccHHHHHHHHHHHH
Confidence 77777777766654
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.80 E-value=3.2e-07 Score=86.54 Aligned_cols=161 Identities=12% Similarity=0.106 Sum_probs=135.0
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDL 707 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~ 707 (934)
...|.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+...+ +.|+ -.+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 445677888999999999999999884 565 56788788888999999999999998876 5666 7788888999
Q ss_pred HhhcCChHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChH
Q 046194 708 LGRAGELDKIEEFINKM---PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWE 783 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m---~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~ 783 (934)
+|..|++++|...|++. |.-|. ..+|..+.....+. |+.+.|+..+++.++++|+++.....+.+...+.|++-
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~--gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA--GQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc--CCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 99999999999999887 32222 45777777777777 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 046194 784 DVAKARKAMKEAEV 797 (934)
Q Consensus 784 ~a~~~~~~m~~~~~ 797 (934)
.|...++.....+.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 99999888776554
No 80
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=6e-06 Score=87.92 Aligned_cols=284 Identities=10% Similarity=0.060 Sum_probs=168.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---cchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHH
Q 046194 389 DSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQ---VSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINI 465 (934)
Q Consensus 389 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~l 465 (934)
.-+..+...-.+-+...+++.+..++++.+.+.|. ..+..-|..+...|+. .+-..+=.+|++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~-n~Lf~lsh~LV~~------------ 307 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKS-NKLFLLSHKLVDL------------ 307 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhccc-chHHHHHHHHHHh------------
Confidence 33444445555555566666666666665554322 2333344455555555 4444444444432
Q ss_pred HHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--CCcchHHHHHHHHHhcCChh
Q 046194 466 LAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER--RDEVSWNSMISGYIHNELLP 543 (934)
Q Consensus 466 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~ 543 (934)
.+....+|-++.-.|.-.|+..+|++.|.....- .-...|-.....|+-.|..+
T Consensus 308 ------------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Ehd 363 (611)
T KOG1173|consen 308 ------------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHD 363 (611)
T ss_pred ------------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHH
Confidence 1223344455666666677888888888765442 13456878888888888888
Q ss_pred HHHHHHHHHHHc--C-CCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhc
Q 046194 544 KAMNLVWFMMQR--G-QRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFD 620 (934)
Q Consensus 544 ~A~~l~~~m~~~--g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 620 (934)
+|+.-+...-+. | ..|. --+---|.+.++.+.|.+.+.++... .+.|+.+.+-+.-+....+.+.+|...|+
T Consensus 364 QAmaaY~tAarl~~G~hlP~----LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 364 QAMAAYFTAARLMPGCHLPS----LYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred HHHHHHHHHHHhccCCcchH----HHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 888777665442 1 1111 11112344556666666666655442 12245555555444444455555555443
Q ss_pred cCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCccc
Q 046194 621 LMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQ 700 (934)
Q Consensus 621 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 700 (934)
... ...+....+. .--..+++.|..+|.+.+++++|+..|+.... -.+.+..+
T Consensus 439 ~~l------------------------~~ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~ 491 (611)
T KOG1173|consen 439 KAL------------------------EVIKSVLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDAST 491 (611)
T ss_pred HHH------------------------HHhhhccccc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhH
Confidence 321 0001110110 11245688888899999999999999999876 24455888
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACC 741 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~ 741 (934)
|+++.-.|...|+++.|.+.|.+. .++|+..+-..+|+.+.
T Consensus 492 ~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 492 HASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999999999999999999887 78888877777777554
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=6.4e-05 Score=75.24 Aligned_cols=442 Identities=14% Similarity=0.101 Sum_probs=241.5
Q ss_pred HHHhhccCChhHHHHHHhcCCCC---CcccHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCch
Q 046194 298 VNMYAKCGTIDDSRSVFRFMIGK---DSVSWNT-MISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWI 373 (934)
Q Consensus 298 i~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 373 (934)
+.-+....++..|+.+++--..- ...+-+. +..++.+.|++++|+..|....... .|+......+..+..-.|..
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34455567888888877544221 1112222 3345667888888888888776643 44555555554444566777
Q ss_pred HHHHHHHHHHhhhCCCCchhHH-HHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHH
Q 046194 374 MLGQQIHGEGLKLGLDSDVSVS-NALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRR 452 (934)
Q Consensus 374 ~~a~~i~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~ 452 (934)
.+|+++-... |+.... ..|...-.+.++-++-..+-+.+.+.. .---+|.+.....-.+ .+|++++.+...
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HY-QeAIdvYkrvL~ 179 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHY-QEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 7777765553 333333 334455556666555555544443321 1111122222222233 667777666654
Q ss_pred cCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CC-cchHH
Q 046194 453 AGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-RD-EVSWN 530 (934)
Q Consensus 453 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~-~~~~~ 530 (934)
.+ |+-...+. .+.-+|.|..-++-+.++++-.... || ++.-|
T Consensus 180 dn--~ey~alNV----------------------------------y~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 180 DN--PEYIALNV----------------------------------YMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred cC--hhhhhhHH----------------------------------HHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 32 11111111 1223455666666666665544433 32 33334
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHH-HHH-HHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 046194 531 SMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFAT-VLS-ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSK 608 (934)
Q Consensus 531 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~-a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 608 (934)
.......+.=+..-|..-..++.+.+-.. ..+.. +++ -+.--..-+.|++++--+.+ +.|. .--.|+-.|.+
T Consensus 224 Lkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPE--ARlNL~iYyL~ 297 (557)
T KOG3785|consen 224 LKACNLFRLINGRTAEDEKKELADNIDQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPE--ARLNLIIYYLN 297 (557)
T ss_pred HHHHHHhhhhccchhHHHHHHHHhccccc--chhHHHHHHcCeEEEeCCccHHHhchHHHh--hChH--hhhhheeeecc
Confidence 43333333222222333333333322111 00000 000 00011122444444433332 1222 22346667899
Q ss_pred cCCHHHHHHHhccCCCCCcccccHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhCcHHH
Q 046194 609 CGRIDYASRFFDLMPVRNVYSWNSMISGYARHGH-------GDKALTLFSQMKLDGPLPDHVT-FVGVLSACSHAGLVDE 680 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~ 680 (934)
.+++++|..+.++.....+.-|-.-.-.++..|+ ..-|.+.|+-.-+++..-|.+. --++.+++.-.-.+++
T Consensus 298 q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 298 QNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred cccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999888764444333332233444443 4456666666555665555332 4445555566678999
Q ss_pred HHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 046194 681 GFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PIT-PNSLIWRTVLGACCRANCRKTELGRKAANML 758 (934)
Q Consensus 681 a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~ 758 (934)
.+.++.++.. |=..-|...| .+..+++..|++.+|.++|-.. +.+ .|..+|.+.+.-|..++ +..+.| ++..
T Consensus 378 Vl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~n-kkP~lA---W~~~ 451 (557)
T KOG3785|consen 378 VLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRN-KKPQLA---WDMM 451 (557)
T ss_pred HHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhc-CCchHH---HHHH
Confidence 9999999987 3344444444 4788999999999999999877 222 57889999999999885 666554 5555
Q ss_pred HhcC-CCC-CchHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 046194 759 FEME-PQN-AVNYVLLANMYASGGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 759 ~~~~-p~~-~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 796 (934)
++.+ |.+ -+....+++...+++.+==|.+.+..+....
T Consensus 452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 6655 322 3346678888999999888888888887543
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.75 E-value=0.00016 Score=78.66 Aligned_cols=374 Identities=14% Similarity=0.154 Sum_probs=212.6
Q ss_pred hccCChhHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHH
Q 046194 302 AKCGTIDDSRSVFRFMIG---KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQ 378 (934)
Q Consensus 302 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 378 (934)
...|+-++|......-.. ++.+.|..+.-.+....++++|+..|+.... +.||....
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qi------------------ 111 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQI------------------ 111 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHH------------------
Confidence 356888999888876654 3567899988888888999999999999887 44554221
Q ss_pred HHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhh---CCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcC-
Q 046194 379 IHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFL---MPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAG- 454 (934)
Q Consensus 379 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g- 454 (934)
+.-|.-.-++.|+++.....-.. ........|.....++.-.|+. ..|..++++..+..
T Consensus 112 ----------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y-~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 112 ----------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY-KMALEILEEFEKTQN 174 (700)
T ss_pred ----------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc
Confidence 11111111222222222111111 1122345677777777778888 88888888887654
Q ss_pred CCCCcccHHHHHH------HHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcc
Q 046194 455 WSPNGVTFINILA------AASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-RDEV 527 (934)
Q Consensus 455 ~~p~~~t~~~ll~------a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~ 527 (934)
-.|+...|.-... .....|.++.+.+......+. +......--.-.+.+.+.+++++|..++..+..+ ||..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 2455555533222 223445555555554433221 1112222334556788899999999999998887 7777
Q ss_pred hHHHHHH-HHHhcCChhHHH-HHHHHHHHc---CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHH
Q 046194 528 SWNSMIS-GYIHNELLPKAM-NLVWFMMQR---GQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSAL 602 (934)
Q Consensus 528 ~~~~li~-~~~~~g~~~~A~-~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 602 (934)
.|+.... ++.+-.+.-+++ .+|....+. .-.|-.... +......-.+....++....+.|+++ ++..+
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----svl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl 326 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL----SVLNGEELKEIVDKYLRPLLSKGVPS---VFKDL 326 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH----HHhCcchhHHHHHHHHHHHhhcCCCc---hhhhh
Confidence 7766554 333344444555 555555442 111211111 11122223334445555666667654 22333
Q ss_pred HHHHHhcCCHH---H-HHHHhccCC--------------CCCcccccH--HHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 046194 603 VDMYSKCGRID---Y-ASRFFDLMP--------------VRNVYSWNS--MISGYARHGHGDKALTLFSQMKLDGPLPDH 662 (934)
Q Consensus 603 i~~y~~~g~~~---~-A~~~~~~~~--------------~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 662 (934)
...|-.-...+ + +..+...+. .|....|+. ++..|-..|+++.|+...+...+. .|+.
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTl 404 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTL 404 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchH
Confidence 33332211111 0 111111111 234444554 667777888888888888888773 5663
Q ss_pred h-hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 663 V-TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 663 ~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
+ -|..=.+-+.+.|++++|..++++..+- -.||...=+--+.-..|+.+.++|.++....
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 3 3444445678888888888888888662 3355444434556667888888888877665
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=4.9e-05 Score=83.97 Aligned_cols=345 Identities=13% Similarity=0.085 Sum_probs=192.4
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHhcCCCC-----------Cc-ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 046194 291 VAVGNGLVNMYAKCGTIDDSRSVFRFMIGK-----------DS-VSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNF 358 (934)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 358 (934)
..+|..+.+|+.+..++|-|.-.+-.|..- |. ..=.-..-.-.+.|..++|..+|++-++
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-------- 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-------- 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH--------
Confidence 457788889999998888888777666320 11 1111111223456778888888888776
Q ss_pred hHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCc
Q 046194 359 SLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEA 438 (934)
Q Consensus 359 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 438 (934)
|..+=+.+-..|.+++|.++-+.--+.-+. .+|.....-+-..++.+.|++.|++...+--..+..|. .+
T Consensus 829 -~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~------e~ 898 (1416)
T KOG3617|consen 829 -YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK------EY 898 (1416)
T ss_pred -HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH------hC
Confidence 334445556677777777765443221111 23333344444556777777777765433211111111 01
Q ss_pred cHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 046194 439 LVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFA 518 (934)
Q Consensus 439 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 518 (934)
+ .....+.+.+ -|...|...-...-..|+.+.|..++...... -+++...+-.|+.++|-++-+
T Consensus 899 p-~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~---------fs~VrI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 899 P-KQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKDY---------FSMVRIKCIQGKTDKAARIAE 962 (1416)
T ss_pred h-HHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhhh---------hhheeeEeeccCchHHHHHHH
Confidence 1 2222222222 23345555555666778888888887766543 456666677788888888776
Q ss_pred hhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHH---------------HHHHH
Q 046194 519 RMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLE---------------RGMEV 583 (934)
Q Consensus 519 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---------------~a~~i 583 (934)
+-. |.....-+...|-..|++.+|..+|.+.+ +|...|+.|-..+.-+ .|-.+
T Consensus 963 esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArY 1030 (1416)
T KOG3617|consen 963 ESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARY 1030 (1416)
T ss_pred hcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHH
Confidence 654 55777778888888888889988887764 3445555554333222 22222
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--------------CCcccccHHHHHHHHcCChHHHHHH
Q 046194 584 HACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--------------RNVYSWNSMISGYARHGHGDKALTL 649 (934)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~l 649 (934)
+++ .|.. ..--+..|-|.|.+.+|+++-=+-.+ .|+...+.-..-|+.+.++++|..+
T Consensus 1031 yEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1031 YEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred HHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 222 1211 11234568888888888775322211 2333333334445566667777666
Q ss_pred HHHHHH----------CC----------------CCCChhh----HHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 650 FSQMKL----------DG----------------PLPDHVT----FVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 650 ~~~m~~----------~g----------------~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
+-..++ +| -.|+..+ +..+...|.++|.+..|-+-|.+.-
T Consensus 1103 L~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1103 LCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 544332 11 1233333 3444556777777777776665553
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.69 E-value=7.6e-05 Score=81.05 Aligned_cols=109 Identities=12% Similarity=0.149 Sum_probs=85.0
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLI-WRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
..++-.++..+-+.|+++.|.++++.. +..|..+- |-.-...+.+. |+++.|-..++.+.+++-.|.-+...-++-
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~--G~l~eAa~~l~ea~elD~aDR~INsKcAKY 448 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHA--GLLDEAAAWLDEAQELDTADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc--CChHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 345567888899999999999999987 77777654 33344455555 999999999999999998887777788888
Q ss_pred HHcCCChHHHHHHHHHHHhCCCc-----CCCceeEEEe
Q 046194 776 YASGGKWEDVAKARKAMKEAEVK-----KEAGCSWVTM 808 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~~~~~~ 808 (934)
..++.+.++|.++..+..+.|.. .+..|.|..+
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 99999999999998888776641 1224667544
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.68 E-value=3.8e-06 Score=88.62 Aligned_cols=202 Identities=10% Similarity=-0.055 Sum_probs=131.0
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHc
Q 046194 564 FATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARH 640 (934)
Q Consensus 564 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 640 (934)
|...-..+...|+.+.|...+..+++.. +.+...++.+...|...|++++|...|+...+ | +..+|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3344444555566666666666555532 22567778888888888999999888887753 3 345778888888899
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHH--HH
Q 046194 641 GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDK--IE 718 (934)
Q Consensus 641 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~--A~ 718 (934)
|++++|++.|++..+. .|+..........+...++.++|...|+.... ...|+...+ .++..+ .|++++ +.
T Consensus 146 g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~ 218 (296)
T PRK11189 146 GRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLM 218 (296)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHH
Confidence 9999999999999884 56644222222234556789999999977654 233443222 333333 454433 33
Q ss_pred HHHHhC-CC----CC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC-CchHHHHHHH
Q 046194 719 EFINKM-PI----TP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN-AVNYVLLANM 775 (934)
Q Consensus 719 ~~~~~m-~~----~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~y~~l~~~ 775 (934)
+.+.+. .. .| ....|..|...+... |+.+.|...++++++.+|.+ ..+-..+..+
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~--g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSL--GDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 333322 11 22 235788899999988 99999999999999999754 4444444444
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.66 E-value=0.00085 Score=74.71 Aligned_cols=377 Identities=12% Similarity=0.043 Sum_probs=201.8
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccH-
Q 046194 387 GLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTF- 462 (934)
Q Consensus 387 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~- 462 (934)
.+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|.-.|.. ..|+.+++.-....-.|+..+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~-s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSD-SKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccc-hHHHHHHHhhcccccCCCcchHH
Confidence 4667889999999999999999999999998764 3456899999999999999 9999999877654433544433
Q ss_pred HHHHHHHh-ccCCchHHHHHHHHHHHhc--CC--CchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 046194 463 INILAAAS-SFSMGKLGHQVHAQVIKYN--VA--NETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYI 537 (934)
Q Consensus 463 ~~ll~a~~-~~~~~~~a~~i~~~~~~~g--~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~ 537 (934)
...-+.|. +.+.++++...-..++... .. ..+..+-.+.-+|...-. ...++. -
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~---------------~a~~~s------e 455 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR---------------QANLKS------E 455 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh---------------cCCChH------H
Confidence 33333343 3466677766666555421 11 111222222222321100 000000 0
Q ss_pred hcCChhHHHHHHHHHHHc-CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 046194 538 HNELLPKAMNLVWFMMQR-GQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 538 ~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 616 (934)
+.....++++.+++..+. +-.|+..-|.++- ++..++++.|.+...+..+.+-..++..+..|.-.+.-.+++.+|+
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 111123444444444332 1233333332222 3334455555555555555443444555555555555555555555
Q ss_pred HHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHH--------------------------HCCCCCC--hhhH
Q 046194 617 RFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMK--------------------------LDGPLPD--HVTF 665 (934)
Q Consensus 617 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------------------------~~g~~p~--~~t~ 665 (934)
.+.+.... .|...-..-+..-..-++.++|+.....+. -.--.|. ..|+
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 55544331 111100001111111233333333322221 1100111 1223
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc--------cHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE--------QFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRT 735 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--------~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 735 (934)
..+..-... ..+.+..-. .+ ......|... .|....+.+.+.++.++|..-+.+. ++.| .+.+|.-
T Consensus 614 r~ls~l~a~--~~~~~~se~-~L-p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~ 689 (799)
T KOG4162|consen 614 RYLSSLVAS--QLKSAGSEL-KL-PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYL 689 (799)
T ss_pred HHHHHHHHh--hhhhccccc-cc-CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHH
Confidence 322221111 001000000 01 1123334432 4556778888999999998777766 5555 3445555
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH--HHHHHH
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAK--ARKAMK 793 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~--~~~~m~ 793 (934)
.....-.. |+.++|..++..++.++|+++..-..++.+|.+.|+-.-|.. +...+.
T Consensus 690 ~G~~~~~~--~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 690 RGLLLEVK--GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred hhHHHHHH--HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 54555555 999999999999999999999999999999999997666655 555554
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5e-05 Score=77.68 Aligned_cols=278 Identities=10% Similarity=-0.012 Sum_probs=199.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH----HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT----FATVLSACASVATLERGMEVHACGVRACLEFDVVIGS 600 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 600 (934)
|+.....+...+...|+.++|...|++.+. +.|+..+ |..+ +...|+.+....+...+....-. ...-+-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~-ta~~wf 304 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVKY-TASHWF 304 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhhc-chhhhh
Confidence 667788999999999999999999998876 4555433 3333 34566777766666655442211 111111
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCCCcc---cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhC
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPVRNVY---SWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAG 676 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 676 (934)
.-........++..|+.+-+...+-|.. .|-.-...+.+.|++++|.-.|+..+. +.|. -..|..|+.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc
Confidence 1112234456788888887776644433 443334577889999999999999987 5654 678999999999999
Q ss_pred cHHHHHHHHHHhHHhhCCCCCcccHHHHH-HHHh-hcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhccCCCcHHHH
Q 046194 677 LVDEGFKHFKSMSQVYGLIPQLEQFSCMV-DLLG-RAGELDKIEEFINKM-PITPNSL-IWRTVLGACCRANCRKTELGR 752 (934)
Q Consensus 677 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li-~~l~-~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~~~~~~~~a~ 752 (934)
...||.-.-+...+. +..+..+.+.+. +.+. .----++|.+++++. .++|+.. ..+.+...|... |..+.+.
T Consensus 383 ~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~E--g~~~D~i 458 (564)
T KOG1174|consen 383 RFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVE--GPTKDII 458 (564)
T ss_pred hHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhh--CccchHH
Confidence 999999887776653 333455555442 2222 222347899999987 7889854 566777788888 9999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHH
Q 046194 753 KAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKL 832 (934)
Q Consensus 753 ~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l 832 (934)
...++.+...|++ ..+..|++++...+.+.+|.+.+..... .+|+++.-.+.+
T Consensus 459 ~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 459 KLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHH
Confidence 9999999999875 7789999999999999999988777653 567788888888
Q ss_pred HHHHHHHHH
Q 046194 833 KELNQKMRD 841 (934)
Q Consensus 833 ~~l~~~m~~ 841 (934)
..|.++|++
T Consensus 512 ~~lEK~~~~ 520 (564)
T KOG1174|consen 512 RLLEKSDDE 520 (564)
T ss_pred HHHHhccCC
Confidence 888888763
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.64 E-value=0.00011 Score=82.00 Aligned_cols=285 Identities=11% Similarity=0.043 Sum_probs=152.6
Q ss_pred HHhhccCChhHHHHHHhcCCC--CCccc-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc------
Q 046194 299 NMYAKCGTIDDSRSVFRFMIG--KDSVS-WNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCAS------ 369 (934)
Q Consensus 299 ~~~~~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------ 369 (934)
..+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..+|+.+.+. .|+...|...+..|..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 445678889999888876544 24444 344556777888888898888888885 4777777666655541
Q ss_pred cCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHH
Q 046194 370 LGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLD 449 (934)
Q Consensus 370 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~ 449 (934)
..+.+...++++.+...- |.......+ .-.+.....+-..+..++..
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl-------------------------------~L~~~~g~~F~~~~~~yl~~ 136 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRL-------------------------------PLDFLEGDEFKERLDEYLRP 136 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHh-------------------------------hcccCCHHHHHHHHHHHHHH
Confidence 112333334444333221 111111000 00001001111445555566
Q ss_pred HHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHh----c----------CCCchh--HHHHHHHHHHhcCCHHHH
Q 046194 450 MRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKY----N----------VANETT--IENALLSCYGKCGEMDDC 513 (934)
Q Consensus 450 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A 513 (934)
+...|+++ +|+.|-..+..........++....... + -+|+.. ++.-+...|...|++++|
T Consensus 137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 66666543 3444444444444444444444333221 0 123332 234445566677777777
Q ss_pred HHHHHhhccC-CC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhC
Q 046194 514 EKIFARMSER-RD-EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRAC 591 (934)
Q Consensus 514 ~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 591 (934)
.+.++...+. |+ +..|..-...|-+.|++.+|.+.++..+... .-|...-+.....+.+.|..+.|.++.....+.+
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 7777765553 43 3345555666777777777777777666542 2244444555556666677777777766666655
Q ss_pred CCCcHhH--------HHHHHHHHHhcCCHHHHHHHhccC
Q 046194 592 LEFDVVI--------GSALVDMYSKCGRIDYASRFFDLM 622 (934)
Q Consensus 592 ~~~~~~~--------~~~li~~y~~~g~~~~A~~~~~~~ 622 (934)
..|-... ......+|.+.|++..|++.|..+
T Consensus 293 ~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 293 VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4332111 133445666666666666655544
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.61 E-value=0.00028 Score=80.26 Aligned_cols=172 Identities=17% Similarity=0.063 Sum_probs=89.6
Q ss_pred chHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHH
Q 046194 171 TISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYA 250 (934)
Q Consensus 171 ~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 250 (934)
...|+..|-+-.+..+ -=...|..+=..++..-+... |.+.++...+.+ ..|...+......|++..+++.|
T Consensus 474 ~~~al~ali~alrld~-----~~apaf~~LG~iYrd~~Dm~R--A~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-----SLAPAFAFLGQIYRDSDDMKR--AKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred HHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHH
Confidence 5555555544433321 112245555555555554444 666666665543 33556677777888888888888
Q ss_pred HHHHHHhhhcccc---hhhhhhhhh--hhhhHHHHHHHH--H--cCCC-chhHHHHHHHHhhccCChhHHHHHHhcCCCC
Q 046194 251 RKIFEQMIQKNVV---SMNGLMEGR--RKGKEVHGYLIR--S--GLFD-MVAVGNGLVNMYAKCGTIDDSRSVFRFMIGK 320 (934)
Q Consensus 251 ~~l~~~m~~~~~~---~~~~~l~~~--~~~~~~~~~~~~--~--g~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 320 (934)
..+.-...++++. .|+-.-.++ -++...|+.+.. + ...| |...+..|-.+|.++|++..|.++|++...-
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 7775444443321 111111111 112233333321 1 1222 3445667777777777777777777766554
Q ss_pred CcccHHHH---HHHHHhCCChhHHHHHHHHHHH
Q 046194 321 DSVSWNTM---ISGLDQNGCYEEAIMNFCAMRR 350 (934)
Q Consensus 321 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~ 350 (934)
++.+|-.- ...-+..|.+.+|++.+.....
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44333221 1123456777777777665543
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.61 E-value=0.0015 Score=74.72 Aligned_cols=638 Identities=12% Similarity=0.053 Sum_probs=315.8
Q ss_pred hhHHHHHHHHhcCCCC-chhhHHHHHHhhhCCCChHHHHHHhhccCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHH
Q 046194 107 GMQVHCLVLKSNQTFD-GLVSNVLIAMYGSCLESTDCARRIFEEIET---RDLISWNSIISVYSQRGDTISVFKLFSRMQ 182 (934)
Q Consensus 107 ~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 182 (934)
+..++..+.....+++ ...+..|-..|... -+...|++.|+...+ -|..+|-.....|++..+++.|+.+.-.--
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~-~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDS-DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 3444444444444443 35677788888887 788899999987664 466689999999999999999999833222
Q ss_pred HccCCCCCCCCceeHHHHHHHHh--cCccccchHHHHHHHHHHHhCCC-CCccchhHHHHHHHhcCChHHHHHHHHHhhh
Q 046194 183 REGFRYSLKPNEYTFGSLITAAY--SSVLSGSYLLQQILAMVKKAGLL-SDLYVGSALVSGFARLGNFYYARKIFEQMIQ 259 (934)
Q Consensus 183 ~~g~~~~~~p~~~t~~~ll~a~~--~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 259 (934)
+.. +.-...++-+-++.. ..++... +..-++.. ..+. -|...|..|..+|.++|++..|.++|.+...
T Consensus 554 qka-----~a~~~k~nW~~rG~yyLea~n~h~--aV~~fQsA--LR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 554 QKA-----PAFACKENWVQRGPYYLEAHNLHG--AVCEFQSA--LRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhc-----hHHHHHhhhhhccccccCccchhh--HHHHHHHH--hcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 221 111112222222221 1122211 22222222 2233 3667889999999999999999999999987
Q ss_pred cccchhhhhh---------hhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhc-------cCChhHHHHHHhcCCCCCcc
Q 046194 260 KNVVSMNGLM---------EGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAK-------CGTIDDSRSVFRFMIGKDSV 323 (934)
Q Consensus 260 ~~~~~~~~~l---------~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~~A~~~f~~~~~~~~~ 323 (934)
-++.+|-+.. +....+....+.++..- ..-....+.|...+.+ .|-...|...|+.- ..
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks----ie 699 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS----IE 699 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HH
Confidence 7766554433 11111112222111110 0000011111111111 12222222222211 11
Q ss_pred cHH-HHHHHHHhCCC----hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCch---H---HHHHHHHHHhhhCCCCch
Q 046194 324 SWN-TMISGLDQNGC----YEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWI---M---LGQQIHGEGLKLGLDSDV 392 (934)
Q Consensus 324 ~~~-~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~~g~~~~~ 392 (934)
.+. +++...+.... ...|..+|.+.. .. .|+......+..-.-..+.. + .|-+.+-.-+ .+..+.
T Consensus 700 ~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~ 775 (1238)
T KOG1127|consen 700 SFIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHM 775 (1238)
T ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhcc
Confidence 111 11111110000 122333333332 11 22222222222212222222 1 1111111111 111223
Q ss_pred hHHHHHHHHHHh----cC----ChHHHHHHHhhCC---CCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCccc
Q 046194 393 SVSNALLSLYAD----AG----YLSRCLKVFFLMP---EHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVT 461 (934)
Q Consensus 393 ~~~~~li~~y~~----~g----~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t 461 (934)
..|..|..-|.+ +| +...|...+.... ..+...||.|--. ...|.+ .-|..-|-+-... -+-...+
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnv-a~aQHCfIks~~s-ep~~~~~ 852 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNV-ACAQHCFIKSRFS-EPTCHCQ 852 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchh-hhhhhhhhhhhhc-cccchhh
Confidence 333333333322 22 2234556665543 3567778877655 444555 5555555544432 2334556
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc------C-CCcchHHHHHH
Q 046194 462 FINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE------R-RDEVSWNSMIS 534 (934)
Q Consensus 462 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~-p~~~~~~~li~ 534 (934)
|..+--.|....+++.|.+.+.......+ .+...|--..-.-...|+.-++..+|..-.. + |+..-|-....
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 66666667778888888888877655432 2222332222223446667777777765211 1 45555655555
Q ss_pred HHHhcCChhHHHHHHHHHHH---------cCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHh-CCCCcHhHHH----
Q 046194 535 GYIHNELLPKAMNLVWFMMQ---------RGQRLDHFTFATVLSACASVATLERGMEVHACGVRA-CLEFDVVIGS---- 600 (934)
Q Consensus 535 ~~~~~g~~~~A~~l~~~m~~---------~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~---- 600 (934)
....+|+.++-+..-+++-. .+.+-+.+.|.......-+.+..+.+.....+.+.. ...-|...||
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 66777777665554444322 133444577777776666777666666555543321 1112333344
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC-CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhh
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPV-RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDH----VTFVGVLSACSHA 675 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~ 675 (934)
.+...+...|.++.|..-+..... -|..+-..-+.. .-.|+++++++.|++... +.-+. +....++-+....
T Consensus 1012 ~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhc
Confidence 234455667778877776665441 121111111222 345789999999999876 22222 2233344444566
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCCh---HHHHHHHHhCC----CCCCHHHHHHHHHHHHhccCCCc
Q 046194 676 GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGEL---DKIEEFINKMP----ITPNSLIWRTVLGACCRANCRKT 748 (934)
Q Consensus 676 g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~---~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~ 748 (934)
+.-+.|...+-+... --+|+....-+|.-++.-..+- .-+++-+.+.+ +.-++.-...++.+ .. |+-
T Consensus 1089 ~~k~~A~~lLfe~~~--ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~--~~--~r~ 1162 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKS--LSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYA--LQ--GRS 1162 (1238)
T ss_pred ccchHHHHHHHHHHH--hCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHH--Hh--hhh
Confidence 777777776655554 2345554444443333222221 12222222221 11122222223322 33 788
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 749 ELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 749 ~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
...++..++..-..|.|+..|..|..=|
T Consensus 1163 ~~vk~~~qr~~h~~P~~~~~WslL~vry 1190 (1238)
T KOG1127|consen 1163 VAVKKQIQRAVHSNPGDPALWSLLSVRY 1190 (1238)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 8899999999999999999999887533
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.57 E-value=1.1e-05 Score=76.32 Aligned_cols=190 Identities=13% Similarity=0.071 Sum_probs=123.6
Q ss_pred HhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHH
Q 046194 571 CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKAL 647 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 647 (934)
|.+.|+...|+.-++.+++.. +.+..++..+...|.+.|+.+.|.+.|+... ..+-...|..-.-+|.+|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333344444444444443321 1134555666667777777777777777554 234456666677777788888888
Q ss_pred HHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 648 TLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 648 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
..|++....---|. ..||..+.-+..+.|+.+.|..+|++..+ +.|+ ......|.+.....|++-+|..+++..
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 88888776432222 45677776666778888888888887766 3455 666777888888888888888888776
Q ss_pred -CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 725 -PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 725 -~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
...++.....-.+..-... ||.+.+.+.-..+....|...
T Consensus 201 ~~~~~~A~sL~L~iriak~~--gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRL--GDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred hcccccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCcH
Confidence 3446666655555555666 887777777777777777653
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.55 E-value=2e-06 Score=89.25 Aligned_cols=249 Identities=10% Similarity=0.040 Sum_probs=155.0
Q ss_pred HHhcCCHHHHHHHHHhhccC-C--CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHH
Q 046194 504 YGKCGEMDDCEKIFARMSER-R--DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERG 580 (934)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~-p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 580 (934)
+.-.|.+..+..-.+ .... | +.....-+.++|.-.|+++.++. ++... -.|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHH
Confidence 334566666665444 2111 1 22234445566777777665442 22222 255555555555545443444444
Q ss_pred HHHHHHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 046194 581 MEVHACGVRACLE-FDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPL 659 (934)
Q Consensus 581 ~~i~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 659 (934)
..-+......... .+..+......+|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444333322222 23344444456678899999999999876 45566667888999999999999999999873 3
Q ss_pred CChhhHHHHHHHHHh--h--CcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHH
Q 046194 660 PDHVTFVGVLSACSH--A--GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIW 733 (934)
Q Consensus 660 p~~~t~~~ll~a~~~--~--g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~ 733 (934)
.| .+...+..++.. . ..+.+|..+|+++.+. ..+++...+.+..+....|++++|.+++++. ...| ++.++
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 44 455556665443 2 3689999999998774 4577788888999999999999999998875 4445 35566
Q ss_pred HHHHHHHHhccCCCc-HHHHHHHHHHHhcCCCCC
Q 046194 734 RTVLGACCRANCRKT-ELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 734 ~~ll~~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 766 (934)
-.++-.+... |+. +.+.+...++....|+.+
T Consensus 239 aNliv~~~~~--gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHL--GKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHT--T-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHh--CCChhHHHHHHHHHHHhCCCCh
Confidence 6666666666 555 778888888888888754
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.53 E-value=3.1e-05 Score=86.35 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=81.5
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHH-HHHHHHh
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRT-VLGACCR 742 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~-ll~~~~~ 742 (934)
..+...|.+.|++++|+++.+...+ ..|+ ++.|..-...|-+.|++++|.+.++.. .+.+...-.|+ ....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 3344456778888888888887765 4566 677777788888888888888888776 44443333333 3334444
Q ss_pred ccCCCcHHHHHHHHHHHhcCC--CC-------CchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 743 ANCRKTELGRKAANMLFEMEP--QN-------AVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p--~~-------~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
. |+++.|+..+.....-+- .. .....-.+..|.+.|++..|.+-+..+.
T Consensus 275 a--~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 A--GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred C--CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4 888888887777655542 11 1112456778889999998888766654
No 94
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=6.8e-08 Score=63.25 Aligned_cols=34 Identities=44% Similarity=0.641 Sum_probs=29.5
Q ss_pred hcCCCCchhhhHHHHHHhhcCChhhHHHhhccCC
Q 046194 14 HGFAYDVFLCNTLINVYVRVGDLASASKLFDEMP 47 (934)
Q Consensus 14 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 47 (934)
.|+.||.++||.||.+||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999988885
No 95
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=5.5e-06 Score=81.81 Aligned_cols=224 Identities=11% Similarity=0.017 Sum_probs=159.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhc
Q 046194 326 NTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADA 405 (934)
Q Consensus 326 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 405 (934)
+.|.++|.+.|.+.+|.+.|+.-++. .|-..||..+-+.+.+..+++.|..++...++. ++-|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777888888888888888777764 566667777778888888888888777776654 445565666677777888
Q ss_pred CChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHH
Q 046194 406 GYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVH 482 (934)
Q Consensus 406 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 482 (934)
++.++|.++++...+ .++.+...+..+|.-.+++ +-|+.+|+++.+.|+. +...|..+--.|.-.++++.+..-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P-E~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP-EMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh-HHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 888899888887754 3566666777788888888 9999999999998864 4556666666777777888877777
Q ss_pred HHHHHhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046194 483 AQVIKYNVANE--TTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQ 554 (934)
Q Consensus 483 ~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 554 (934)
......--.|+ ..+|-.|-....-.|++..|.+.|.-.... | +..++|.|.-.-.+.|+.++|..++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 77665444333 245555655666667777777777765543 2 345566666666677777777777766554
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.44 E-value=0.00025 Score=70.91 Aligned_cols=307 Identities=12% Similarity=0.078 Sum_probs=167.9
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCccchHHHH---HHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCC
Q 046194 398 LLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVI---GAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSM 474 (934)
Q Consensus 398 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 474 (934)
|...+...|++.+|+.-|....+-|...|-++. ..|...|+. ..|+.-|...++ .+||-..-.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks-k~al~Dl~rVle--lKpDF~~AR----------- 109 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS-KAALQDLSRVLE--LKPDFMAAR----------- 109 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC-ccchhhHHHHHh--cCccHHHHH-----------
Confidence 444555667777777777777776666666554 356666666 666655555543 234321110
Q ss_pred chHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046194 475 GKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYIHNELLPKAMNLVWFMM 553 (934)
Q Consensus 475 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 553 (934)
-.-...+.+.|.++.|..-|+.+.+. |+..+ ...++.+. .+..++.
T Consensus 110 -----------------------iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~---~~eaqskl-------~~~~e~~ 156 (504)
T KOG0624|consen 110 -----------------------IQRGVVLLKQGELEQAEADFDQVLQHEPSNGL---VLEAQSKL-------ALIQEHW 156 (504)
T ss_pred -----------------------HHhchhhhhcccHHHHHHHHHHHHhcCCCcch---hHHHHHHH-------HhHHHHH
Confidence 01112456778888888888877664 22111 11111111 1111111
Q ss_pred HcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccC---CCCCcccc
Q 046194 554 QRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLM---PVRNVYSW 630 (934)
Q Consensus 554 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~ 630 (934)
.....+..+...|+...+......+++.. +.|...+..-.+.|...|++..|+.=+... ...|....
T Consensus 157 ---------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ 226 (504)
T KOG0624|consen 157 ---------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGH 226 (504)
T ss_pred ---------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHH
Confidence 11122233344556666666666655531 236667777777788888887776555443 34455566
Q ss_pred cHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH-----------HH--HHHhhCcHHHHHHHHHHhHHhhCCCCC
Q 046194 631 NSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGV-----------LS--ACSHAGLVDEGFKHFKSMSQVYGLIPQ 697 (934)
Q Consensus 631 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-----------l~--a~~~~g~~~~a~~~~~~m~~~~~~~p~ 697 (934)
--+-..+...|+.+.++...++-.+ +.||....... -+ .....+.|.++++-.+...+ ..|.
T Consensus 227 ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~ 301 (504)
T KOG0624|consen 227 YKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPE 301 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCc
Confidence 6666677777888888877777776 56775431111 00 12234445555555554443 2333
Q ss_pred -----cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 698 -----LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 698 -----~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
...+..+-.++...|++.+|+....+. .+.|| +.++.--..++... ..++.|..-++++.+.+|+|...
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d--E~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD--EMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhcCcccHHH
Confidence 122333444555666777777666655 55555 55555555666655 66777777777777777766443
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=0.00016 Score=77.10 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=49.3
Q ss_pred HHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCC
Q 046194 240 GFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIG 319 (934)
Q Consensus 240 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 319 (934)
+.+..|+++.|...|-+...-+ ++|.+.|+.-...|++.|++++|.+=-.+-.+
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--------------------------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~ 64 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--------------------------PTNHVLYSNRSAAYASLGSYEKALKDATKTRR 64 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--------------------------CCccchhcchHHHHHHHhhHHHHHHHHHHHHh
Confidence 4455677777777776655433 23455566666667777777666654433322
Q ss_pred --CC-cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046194 320 --KD-SVSWNTMISGLDQNGCYEEAIMNFCAMRR 350 (934)
Q Consensus 320 --~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (934)
|+ ...|+-...++.-.|++++|+.-|.+-++
T Consensus 65 l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~ 98 (539)
T KOG0548|consen 65 LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLE 98 (539)
T ss_pred cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhh
Confidence 22 12455666666666667777766666554
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.43 E-value=0.00016 Score=79.25 Aligned_cols=292 Identities=10% Similarity=-0.037 Sum_probs=155.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC-C-Ccch---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hHHHH---HH
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSER-R-DEVS---WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH-FTFAT---VL 568 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~---ll 568 (934)
..+...+...|+.+++.+.+...... | +... .......+...|++++|.+.+++.... .|+. ..+.. ..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~ 87 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHH
Confidence 34444455556666655555444332 1 2111 112223455677777777777777664 2332 22221 11
Q ss_pred HHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChH
Q 046194 569 SACASVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGD 644 (934)
Q Consensus 569 ~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 644 (934)
......+..+.+.+.+.. .....| .......+...+...|++++|.+.+++... .+...+..+...|...|+++
T Consensus 88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 111123333444444333 111222 233444556677788888888888877653 23446667777788888888
Q ss_pred HHHHHHHHHHHCCC-CCCh--hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc---cHHHHHHHHhhcCChHHHH
Q 046194 645 KALTLFSQMKLDGP-LPDH--VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE---QFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 645 ~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~y~~li~~l~~~g~~~~A~ 718 (934)
+|+.++++...... .|+. ..|..+...+...|++++|..+++.........+... ....+...+...|..+.+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 88888887776421 1222 2244566667788888888888887743211111111 1112233333444333332
Q ss_pred HH--H-HhC-CCCCC---HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCC---------CCCchHHHHHHHHHcCCCh
Q 046194 719 EF--I-NKM-PITPN---SLIWRTVLGACCRANCRKTELGRKAANMLFEMEP---------QNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 719 ~~--~-~~m-~~~p~---~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p---------~~~~~y~~l~~~~~~~g~~ 782 (934)
.+ + ... +..|. .........++... |+.+.+....+.+....- .......+.+.++...|++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGA--GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 22 1 111 11011 12222444455555 788888887776654321 1355677888899999999
Q ss_pred HHHHHHHHHHHhC
Q 046194 783 EDVAKARKAMKEA 795 (934)
Q Consensus 783 ~~a~~~~~~m~~~ 795 (934)
++|.+.+......
T Consensus 324 ~~A~~~L~~al~~ 336 (355)
T cd05804 324 ATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988777654
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=1.2e-05 Score=86.16 Aligned_cols=249 Identities=12% Similarity=0.094 Sum_probs=183.7
Q ss_pred HhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHH
Q 046194 571 CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKAL 647 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 647 (934)
+.+.|++..|.-.|+..++.... +...|--|.-.-...++-..|+..+.+..+ .|....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 35678888888888888876422 677777777777778887888888887764 35557777778888899999999
Q ss_pred HHHHHHHHCCCC--------CChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHH
Q 046194 648 TLFSQMKLDGPL--------PDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 648 ~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~ 719 (934)
..++.-+....+ ++..+-.. ....+.....+..++|-.+....+..+|+..+.+|.-+|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887653210 01000000 12223344556667777777666767889999999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 720 FINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 720 ~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
-|+.. .++| |...||-|...+... .+.++|..+|.+++++.|.-......|+-.|...|.++||.+.+-......-
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~--~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANG--NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCC--cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99987 7777 567899999999888 8999999999999999999999999999999999999999998776654322
Q ss_pred cCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 046194 798 KKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMR 840 (934)
Q Consensus 798 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 840 (934)
+-..+ .+..++ ++.||..|......|.
T Consensus 530 ks~~~---------------~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 530 KSRNH---------------NKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred ccccc---------------ccCCcc-hHHHHHHHHHHHHHcC
Confidence 11000 011122 6788888886555553
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.40 E-value=2.7e-07 Score=60.40 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=32.1
Q ss_pred hCCCCCccchhHHHHHHHhcCChHHHHHHHHHhh
Q 046194 225 AGLLSDLYVGSALVSGFARLGNFYYARKIFEQMI 258 (934)
Q Consensus 225 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 258 (934)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.38 E-value=4.7e-06 Score=86.49 Aligned_cols=243 Identities=9% Similarity=-0.024 Sum_probs=157.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 046194 535 GYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDY 614 (934)
Q Consensus 535 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 614 (934)
-+.-.|++..++.-.. .....-..+..+...+.+++...|..+.+ ...+.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445788888886555 22222222334555667777777876543 33333333 5666665556555544456666
Q ss_pred HHHHhccCC-CCCc---ccccH-HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 615 ASRFFDLMP-VRNV---YSWNS-MISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 615 A~~~~~~~~-~~~~---~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
+..-+++.. .+.. .++.. ....+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665443 2211 12222 223455679999999988753 344556667788899999999999999997
Q ss_pred HhhCCCCCcccHHHHHH----HHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCC
Q 046194 690 QVYGLIPQLEQFSCMVD----LLGRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEP 763 (934)
Q Consensus 690 ~~~~~~p~~~~y~~li~----~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p 763 (934)
+ +..| .+...+.. ...-.+++.+|.-+|+++ ...+++.+.+.+..+.... |++++|+..++.+++.+|
T Consensus 159 ~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~--~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 159 Q---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL--GHYEEAEELLEEALEKDP 232 (290)
T ss_dssp C---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC--T-HHHHHHHHHHHCCC-C
T ss_pred h---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhcc
Confidence 5 4444 33333333 333335799999999999 4557788888888888788 999999999999999999
Q ss_pred CCCchHHHHHHHHHcCCCh-HHHHHHHHHHHh
Q 046194 764 QNAVNYVLLANMYASGGKW-EDVAKARKAMKE 794 (934)
Q Consensus 764 ~~~~~y~~l~~~~~~~g~~-~~a~~~~~~m~~ 794 (934)
.++.+...++-+..-.|+. +.+.+.+..++.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999999999999998 667778887774
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.32 E-value=2.9e-05 Score=79.38 Aligned_cols=179 Identities=12% Similarity=0.026 Sum_probs=105.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CCc----ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----h
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV--RNV----YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHV----T 664 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 664 (934)
....+-.+...|.+.|++++|...|+++.. |+. .+|..+..+|...|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344455556666666777777776665542 221 24455666666667777777777776663 34322 2
Q ss_pred HHHHHHHHHhh--------CcHHHHHHHHHHhHHhhCCCCCcc-cHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 046194 665 FVGVLSACSHA--------GLVDEGFKHFKSMSQVYGLIPQLE-QFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRT 735 (934)
Q Consensus 665 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ 735 (934)
+..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +....... .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~~-----------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRLA-----------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHHH-----------HHHHH
Confidence 33333334333 5566666666666552 23321 11111110 00000000 01123
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNA---VNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
+...+... |+.+.|...++.+++..|+++ ..+..++.+|...|++++|.+.++.+..+
T Consensus 172 ~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKR--GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHc--CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44556666 999999999999999977654 68899999999999999999998887654
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.31 E-value=0.0079 Score=64.45 Aligned_cols=431 Identities=13% Similarity=0.119 Sum_probs=235.3
Q ss_pred CCchhHHHHHHHHhhccCChhHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 046194 288 FDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGK---DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTL 364 (934)
Q Consensus 288 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 364 (934)
+.|+..|+.||.-+... .+++++..++++..+ ....|..-|.+-....+++....+|.+.+..-+..| -|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlD--LW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLD--LWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHh--HHHHHH
Confidence 34677788888876655 899999999988653 556799999999999999999999999887544433 344444
Q ss_pred HHhhcc-CchHH----HHHHHHHHh-hhCCCCch-hHHHHHHHH---------HHhcCChHHHHHHHhhCCCC-------
Q 046194 365 SSCASL-GWIML----GQQIHGEGL-KLGLDSDV-SVSNALLSL---------YADAGYLSRCLKVFFLMPEH------- 421 (934)
Q Consensus 365 ~a~~~~-~~~~~----a~~i~~~~~-~~g~~~~~-~~~~~li~~---------y~~~g~~~~A~~~f~~~~~~------- 421 (934)
+-..+. +.... -.+.++..+ +.|+.+-. ..|+..+.. |....+++...++++++...
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 433221 22222 223334333 45654432 355555543 34445677788888887642
Q ss_pred ---CccchHHHHHHH------H-hCCccHHHHHHHHHHHHH--cCCCCCccc---------------HHHHHHHHhccCC
Q 046194 422 ---DQVSWNSVIGAF------A-DSEALVSEAVKYYLDMRR--AGWSPNGVT---------------FINILAAASSFSM 474 (934)
Q Consensus 422 ---~~~~~~~li~~~------~-~~g~~~~~A~~l~~~m~~--~g~~p~~~t---------------~~~ll~a~~~~~~ 474 (934)
|-..|..=|+.. . +...+ ..|.++++++.. .|..-...+ |..+|..=-..+-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Y-m~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEY-MNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHH-HHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 222222222111 1 12233 677777777654 344333333 2222222111110
Q ss_pred c-h----HHHH---HHHH-HHHhcCCCchhHHH-----HHHHHHHhcCCHH-------HHHHHHHhhccC---CCcchHH
Q 046194 475 G-K----LGHQ---VHAQ-VIKYNVANETTIEN-----ALLSCYGKCGEMD-------DCEKIFARMSER---RDEVSWN 530 (934)
Q Consensus 475 ~-~----~a~~---i~~~-~~~~g~~~~~~~~~-----~li~~~~~~g~~~-------~A~~~~~~~~~~---p~~~~~~ 530 (934)
- . ...+ ++++ +.-.+..|++.... ..-+.+...|+.+ ++.+++++.... -+...|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1111 1222 22234444432211 1122344444433 333344333221 0222222
Q ss_pred HHHHHH---HhcCChhHHHHHHHHHHHc-CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHH
Q 046194 531 SMISGY---IHNELLPKAMNLVWFMMQR-GQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEF-DVVIGSALVDM 605 (934)
Q Consensus 531 ~li~~~---~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~ 605 (934)
.+..-- ......+.....++++... .++|+ .+|...++...+..-+..|+.+|..+.+.+..+ +++++++++..
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 222110 0111244455555555443 23333 456677777777777888888888888877666 78888888887
Q ss_pred HHhcCCHHHHHHHhccCCC--CCccc-ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhhCcHHH
Q 046194 606 YSKCGRIDYASRFFDLMPV--RNVYS-WNSMISGYARHGHGDKALTLFSQMKLDGPLPDH--VTFVGVLSACSHAGLVDE 680 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 680 (934)
|+ .++.+-|.++|+.-.+ +|... -...+.-+...++-..|..+|++....++.||. ..|..+|.-=+.-|+...
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 76 4667778888875432 34332 334555666677777778888887777666663 457777777777777777
Q ss_pred HHHHHHHhHHhhC--CCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 681 GFKHFKSMSQVYG--LIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 681 a~~~~~~m~~~~~--~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
+.++-+++...+. ..|...+-..+++.|.=.+....-..-++.+
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 7777777666544 4444455555666666555544443333333
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.27 E-value=1.5e-05 Score=73.80 Aligned_cols=122 Identities=11% Similarity=-0.010 Sum_probs=94.0
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 647 LTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 647 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
..+|++..+ +.|+. +.....++...|++++|...|+.... +.|+ ...|..+..++.+.|++++|...+++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355666666 45664 44566677888899999988888865 4444 777888888888899999999888887
Q ss_pred CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 725 PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 725 ~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
...| ++..|..+..++... |+.++|...+++++++.|+++..+...+++..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~--g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMM--GEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4555 566777777777777 99999999999999999999888888777644
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.26 E-value=0.00073 Score=74.09 Aligned_cols=265 Identities=15% Similarity=0.085 Sum_probs=168.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhHHHHH-HHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHH---
Q 046194 526 EVSWNSMISGYIHNELLPKAMNLVWFMMQRG-QRLDHFTFATV-LSACASVATLERGMEVHACGVRACLEFDVVIGS--- 600 (934)
Q Consensus 526 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~l-l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~--- 600 (934)
...|..+...+...|+.+++.+.+.+..... ..++......+ ...+...|+.+.+.++++.+.+.. +.+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4456666777777888888877777665432 12233222221 223456789999999999988763 22443433
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCCCc---ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhC
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPVRNV---YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAG 676 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 676 (934)
.+.......|..+.+.+.++.....+. ..+..+...+...|++++|+..+++..+. .|+ ...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 222222335666777777765332222 23334556788999999999999999995 565 455677777899999
Q ss_pred cHHHHHHHHHHhHHhhCCCCCc--ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC--CHHHH--H--HHHHHHHhccCCC
Q 046194 677 LVDEGFKHFKSMSQVYGLIPQL--EQFSCMVDLLGRAGELDKIEEFINKM-PITP--NSLIW--R--TVLGACCRANCRK 747 (934)
Q Consensus 677 ~~~~a~~~~~~m~~~~~~~p~~--~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p--~~~~~--~--~ll~~~~~~~~~~ 747 (934)
++++|..+++.........|+. ..|..+...+...|++++|.+.+++. ...| ..... + .++.-.... |.
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~ 240 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA--GH 240 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc--CC
Confidence 9999999999987632222332 24557889999999999999999986 2233 22211 1 334444444 65
Q ss_pred cHHHHHH---HHHHHhcCCCC--CchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 748 TELGRKA---ANMLFEMEPQN--AVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 748 ~~~a~~~---~~~~~~~~p~~--~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.+.+.+. ........|.. ...-...+.++...|++++|.+.++.++..
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5555444 22222211221 122336788899999999999999888754
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.24 E-value=4.6e-05 Score=74.61 Aligned_cols=117 Identities=9% Similarity=0.099 Sum_probs=84.6
Q ss_pred hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhccCCC--cH
Q 046194 675 AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGAC-CRANCRK--TE 749 (934)
Q Consensus 675 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~~~~~--~~ 749 (934)
.++.+++...++...+. -+.+...|..+...|...|++++|.+.+++. ...| +..++..+..+. ... |+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~--g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQA--GQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCCCcH
Confidence 45556666666655542 2333677777777777888888888777776 4555 455666666653 455 55 58
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
+|...++++++.+|+++..+..++..+...|++++|...++++.+.
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888888888888888888888888888888888888888653
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.23 E-value=0.0043 Score=77.53 Aligned_cols=193 Identities=9% Similarity=0.004 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC------CC----cchHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC--HhH
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSER------RD----EVSWNSMISGYIHNELLPKAMNLVWFMMQR--GQRLD--HFT 563 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~------p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t 563 (934)
..+...+...|+++.|...+++.... ++ ...+..+...+...|++++|...+.+.... ...+. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 34444555666666666665543321 01 112233334455567777776666665432 11111 122
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHh----CCCCcH--hHHHHHHHHHHhcCCHHHHHHHhccCCCCCcc-c------c
Q 046194 564 FATVLSACASVATLERGMEVHACGVRA----CLEFDV--VIGSALVDMYSKCGRIDYASRFFDLMPVRNVY-S------W 630 (934)
Q Consensus 564 ~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~------~ 630 (934)
+..+.......|+.+.|.+.+..+... +..... ......+..+...|+.+.|...+.....+... . +
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 223333445566666666666555332 100000 00011123345577777777777655432211 1 2
Q ss_pred cHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 631 NSMISGYARHGHGDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 631 ~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
..+..++...|++++|..++++.... |..++ ..+...+..++...|+.++|...+.+..+
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666777777777777776542 22222 12344444556677777777777776665
No 108
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.23 E-value=2.2e-05 Score=71.05 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=98.4
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
.+..-.+...+...|++++|.++|+-. .+.|. ..-|-.|...|... |+++.|..++.++..++|+||.+|..++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~--g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ--KHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 455556677788999999999999987 56664 55678888888888 999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHH
Q 046194 776 YASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRD 841 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 841 (934)
|...|+.+.|.+-|+...... ..+|+...+.++.+.....|.+
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 999999999999998776421 1467788888777777766643
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.17 E-value=0.0043 Score=77.50 Aligned_cols=155 Identities=8% Similarity=-0.083 Sum_probs=70.8
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCccc--hHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCc
Q 046194 398 LLSLYADAGYLSRCLKVFFLMPEHDQVS--WNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMG 475 (934)
Q Consensus 398 li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 475 (934)
....|...|++.+|..........+... ...........|+. ..+..++..+.......+..........+...+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~-~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGEL-SLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCCh-HHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 3445666677777766665555432211 11111233445565 66666655542111111122222233334455666
Q ss_pred hHHHHHHHHHHHhcCC------Cc--hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C--Cc----chHHHHHHHHHhcC
Q 046194 476 KLGHQVHAQVIKYNVA------NE--TTIENALLSCYGKCGEMDDCEKIFARMSER-R--DE----VSWNSMISGYIHNE 540 (934)
Q Consensus 476 ~~a~~i~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p--~~----~~~~~li~~~~~~g 540 (934)
+.+..........--. +. ......+...+...|++++|...+++.... | +. ..++.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 7766666655432110 01 111122233445566666666666654331 1 11 12333444455566
Q ss_pred ChhHHHHHHHHHH
Q 046194 541 LLPKAMNLVWFMM 553 (934)
Q Consensus 541 ~~~~A~~l~~~m~ 553 (934)
++++|...+.+..
T Consensus 506 ~~~~A~~~~~~al 518 (903)
T PRK04841 506 ELARALAMMQQTE 518 (903)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666554
No 110
>PLN02789 farnesyltranstransferase
Probab=98.12 E-value=0.00034 Score=73.67 Aligned_cols=171 Identities=11% Similarity=0.092 Sum_probs=112.5
Q ss_pred HHhcC-CHHHHHHHhccCCC---CCcccccHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHH
Q 046194 606 YSKCG-RIDYASRFFDLMPV---RNVYSWNSMISGYARHGHG--DKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVD 679 (934)
Q Consensus 606 y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 679 (934)
+.+.| ++++++..++.+.. ++..+|+.....+.+.|+. ++++.+++++.+.. +-|...|..-.-++.+.|+++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHH
Confidence 33444 45666666665542 3344565544444445542 56788888887743 223566777777777888888
Q ss_pred HHHHHHHHhHHhhCCCCCcccHHHHHHHHhhc---CCh----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccC--CCc
Q 046194 680 EGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRA---GEL----DKIEEFINKM-PITP-NSLIWRTVLGACCRANC--RKT 748 (934)
Q Consensus 680 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~---g~~----~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~--~~~ 748 (934)
++++.++++.+. -.-+...|+....++.+. |.+ +++.++..++ ...| |...|+.+.+.+...+. ++.
T Consensus 160 eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 160 DELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccc
Confidence 888888888773 223355666665555444 222 4667777554 5555 57789999998887411 344
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 046194 749 ELGRKAANMLFEMEPQNAVNYVLLANMYASG 779 (934)
Q Consensus 749 ~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~ 779 (934)
..+......+.+.+|.++.....|+++|...
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 6688888888899999999999999999874
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=8.6e-05 Score=81.81 Aligned_cols=196 Identities=15% Similarity=0.136 Sum_probs=136.0
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046194 591 CLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLS 670 (934)
Q Consensus 591 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 670 (934)
+++|--..-..+.+.+.++|-...|..+|++.. .|.-.|.+|...|+..+|..+..+-.+ -+||...|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 455555666678888888899999998888754 677788888888888888888888777 3678888888877
Q ss_pred HHHhhCcHHHHHHHHHHhHHh--h-----------------------CCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 671 ACSHAGLVDEGFKHFKSMSQV--Y-----------------------GLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~--~-----------------------~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
.......+++|+++++..... + .+.|- ..+|-....+..+.++++.|.+.|...
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 777666677777776654432 0 11121 334444555555666777777666655
Q ss_pred -CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 725 -PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 725 -~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
...|| ...|++|-.++.+. ++..+|....+.+++-+-++...+.+..-+..+.|.|++|.+....+.+.
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~--~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRL--KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHH--hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 55665 44677777777777 77777777777777777666666666666777777777777777666544
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.11 E-value=0.00017 Score=70.61 Aligned_cols=156 Identities=10% Similarity=0.083 Sum_probs=118.2
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGF 682 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 682 (934)
+-+|.+.|+++......+.+..+. . .|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456888888877655554332221 0 1122567788888888888753 344677888888999999999999
Q ss_pred HHHHHhHHhhCCCCC-cccHHHHHHHH-hhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHH
Q 046194 683 KHFKSMSQVYGLIPQ-LEQFSCMVDLL-GRAGE--LDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAAN 756 (934)
Q Consensus 683 ~~~~~m~~~~~~~p~-~~~y~~li~~l-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 756 (934)
..|++..+ +.|+ ...+..+..++ .+.|+ .++|.+++++. ...| +..++..|...+... |++++|...++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~--g~~~~Ai~~~~ 168 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQ--ADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 99998876 5565 77888888864 67787 59999999998 5666 456777777788888 99999999999
Q ss_pred HHHhcCCCCCchHHHH
Q 046194 757 MLFEMEPQNAVNYVLL 772 (934)
Q Consensus 757 ~~~~~~p~~~~~y~~l 772 (934)
+++++.|++..-+..+
T Consensus 169 ~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 169 KVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHhhCCCCccHHHHH
Confidence 9999999987765544
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00014 Score=70.77 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=93.4
Q ss_pred CCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 046194 659 LPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTV 736 (934)
Q Consensus 659 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 736 (934)
.|+......+-.++...|+-+.+..+...... ....+.......+....+.|++.+|...+.+. +-+||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45433334455566677777777776655543 12223444555777788888888888888877 445567778777
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 737 LGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 737 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+|-+. |+.+.|...+.+++++.|.++.++..|+-.|.-.|+.++|..++.....
T Consensus 141 gaaldq~--Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 141 GAALDQL--GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHc--cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777 8888888888888888888888888888888888888888877766654
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=0.00011 Score=85.32 Aligned_cols=187 Identities=10% Similarity=0.067 Sum_probs=136.5
Q ss_pred hHHHHHHH-HHhchhhHHHH-HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC------CCCcccccHH
Q 046194 562 FTFATVLS-ACASVATLERG-MEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP------VRNVYSWNSM 633 (934)
Q Consensus 562 ~t~~~ll~-a~~~~~~~~~a-~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~l 633 (934)
.|...++. +.+..|..+++ .+++.++.+ ++ .+.|.+..+..-+-+.. ..++..+-.|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VL---ERHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HH---HHhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 34444444 55666655544 666666544 22 33333333333222221 1346677888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGPLPDH-VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA 711 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~ 711 (934)
.....+.|+.++|+.+++...+ +.||. ..+..+...+.+.+.+++|+..+++... ..|+ ..+...+..++.+.
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHh
Confidence 8888899999999999999998 68884 4577777889999999999999998876 4566 77788888999999
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHH
Q 046194 712 GELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYV 770 (934)
Q Consensus 712 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~ 770 (934)
|++++|.++|++. ...|+ ..+|.++..++... |+.+.|..+++++++...+-...|.
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~--G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRR--GALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999999999988 23444 77889999999999 9999999999999998876655543
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.00057 Score=75.59 Aligned_cols=218 Identities=11% Similarity=0.106 Sum_probs=173.1
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 046194 488 YNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATV 567 (934)
Q Consensus 488 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 567 (934)
.+++|-......+.+.+.++|-...|..+|+++ ..|...|.+|+..|+..+|..+.++..+ -+||..-|..+
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 355677777788999999999999999999965 4688889999999999999999888877 57899999999
Q ss_pred HHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCC---CcccccHHHHHHHHcCChH
Q 046194 568 LSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVR---NVYSWNSMISGYARHGHGD 644 (934)
Q Consensus 568 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 644 (934)
.+...+..-+++|.++.++.... .-..+.......++++++.+.|+.-..- -..+|-..-.+..+.++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 99998888899999988875432 1111112223468889999888865432 3448888888888999999
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHh
Q 046194 645 KALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINK 723 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~ 723 (934)
.|.+.|..-.. ..|| ...|+++-.++.+.|+-.+|...+.+..+ ++ .-+...|...+-.....|.+++|.+.+.+
T Consensus 537 ~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 537 AAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999998887 5788 45699999999999999999999999887 34 34455566666777889999999998887
Q ss_pred C
Q 046194 724 M 724 (934)
Q Consensus 724 m 724 (934)
+
T Consensus 613 l 613 (777)
T KOG1128|consen 613 L 613 (777)
T ss_pred H
Confidence 6
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.00015 Score=78.01 Aligned_cols=238 Identities=11% Similarity=0.103 Sum_probs=121.0
Q ss_pred HHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHH
Q 046194 504 YGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERG 580 (934)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 580 (934)
+.+.|++.+|.-.|+....+ | +...|--|-.....+++-..|+.-+++-.+ +.|+ ...+..|.-.|.+.|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHHH
Confidence 34556666666666655443 3 455566666666666666666666665554 3443 34444444555566655556
Q ss_pred HHHHHHHHHhCCCC--------cHhHHHHHHHHHHhcCCHHHHHHHhccCC-----CCCcccccHHHHHHHHcCChHHHH
Q 046194 581 MEVHACGVRACLEF--------DVVIGSALVDMYSKCGRIDYASRFFDLMP-----VRNVYSWNSMISGYARHGHGDKAL 647 (934)
Q Consensus 581 ~~i~~~~~~~~~~~--------~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~ 647 (934)
...++.-++..++- +...-+. ........+....++|-++. ..|......|--.|-..|.+++|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 55555443322110 0000000 00000011122222232221 234445555555556666666666
Q ss_pred HHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 648 TLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 648 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
..|+..+. ++|+ ..+|+-|...++...+.++|+..|++..+ +.|+ +.....|.-.|...|.++||.+.|-+.
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 66666665 3454 44566666666666666666666666654 5566 445555555666666666665544332
Q ss_pred -----------CCCCCHHHHHHHHHHHHhccCCCcHHHH
Q 046194 725 -----------PITPNSLIWRTVLGACCRANCRKTELGR 752 (934)
Q Consensus 725 -----------~~~p~~~~~~~ll~~~~~~~~~~~~~a~ 752 (934)
.-.++..+|.+|=.++... ++.+...
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~--~~~D~l~ 562 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAM--NRSDLLQ 562 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHc--CCchHHH
Confidence 0112456777777776666 5555333
No 117
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0017 Score=63.94 Aligned_cols=283 Identities=11% Similarity=0.020 Sum_probs=166.1
Q ss_pred HHHHHHhhccCChhHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH-HHHhhcc
Q 046194 295 NGLVNMYAKCGTIDDSRSVFRFMIGK---DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLIST-LSSCASL 370 (934)
Q Consensus 295 ~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~ 370 (934)
++.+.-+.+..++++|++++..-.++ +....+.+..+|....++..|-+.|+++-. ..|...-|... ..++-+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 45555567788899999988766554 455677788888899999999999998866 34544433321 1233344
Q ss_pred CchHHHHHHHHHHhhhCCCCchhHHHHHH--HHHHhcCChHHHHHHHhhCCC-CCccchHHHHHHHHhCCccHHHHHHHH
Q 046194 371 GWIMLGQQIHGEGLKLGLDSDVSVSNALL--SLYADAGYLSRCLKVFFLMPE-HDQVSWNSVIGAFADSEALVSEAVKYY 447 (934)
Q Consensus 371 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li--~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~~A~~l~ 447 (934)
+.+..|..+...|... ++...-..-+ ...-..+++..+..+.++.+. .+..+-+...-...+.|++ ++|++-|
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy-EaAvqkF 167 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY-EAAVQKF 167 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH-HHHHHHH
Confidence 5566666666665442 1111111111 122346778888888888884 4555555555556688888 9999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCch---------------------hHHHHHHH----
Q 046194 448 LDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANET---------------------TIENALLS---- 502 (934)
Q Consensus 448 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---------------------~~~~~li~---- 502 (934)
+...+-+.-.....|+..+.. -+.++...|.....++++.|+...+ ..-++++.
T Consensus 168 qaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 888775433344566655543 4567888888888888887764221 11123333
Q ss_pred ---HHHhcCCHHHHHHHHHhhccC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchh
Q 046194 503 ---CYGKCGEMDDCEKIFARMSER----RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVA 575 (934)
Q Consensus 503 ---~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 575 (934)
.+.+.|+.+.|.+.+-.|+.+ .|++|...+.-.- -.+++.+..+-+.-+..... -...||..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhH
Confidence 245567777777777777664 2555543332211 13334444443333433322 23356666666666666
Q ss_pred hHHHHHHHHHH
Q 046194 576 TLERGMEVHAC 586 (934)
Q Consensus 576 ~~~~a~~i~~~ 586 (934)
-++.|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 66665555443
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00075 Score=66.28 Aligned_cols=177 Identities=13% Similarity=0.166 Sum_probs=113.4
Q ss_pred hcCCHHHHHHHhccCCC-CCcccccHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 608 KCGRIDYASRFFDLMPV-RNVYSWNSMISGYARHGHGDKALTLFSQMKLD-GPLPDHVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 608 ~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
..+++..+..+.++.+. .+..+.+.......+.|+++.|++-|+...+- |..| ...|+..+ +..+.|+++.|+++.
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHI 201 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHH
Confidence 34566666666666662 34444444444445667777777777776653 4433 34455444 333456677777776
Q ss_pred HHhHHhhCCC-------------CC--------cccHHHHHH-------HHhhcCChHHHHHHHHhCC----CCCCHHHH
Q 046194 686 KSMSQVYGLI-------------PQ--------LEQFSCMVD-------LLGRAGELDKIEEFINKMP----ITPNSLIW 733 (934)
Q Consensus 686 ~~m~~~~~~~-------------p~--------~~~y~~li~-------~l~~~g~~~~A~~~~~~m~----~~p~~~~~ 733 (934)
.++.+. |++ || .-+-+.++. .+.+.|+++.|.+.+-.|| .+.|++|.
T Consensus 202 SEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 202 SEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 666653 332 11 112333443 3467899999999999994 34578887
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHH
Q 046194 734 RTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 734 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~ 790 (934)
..+.-. ... ++...+.+-.+-+++++|--+.++..+.-+|++..-++-|..++-
T Consensus 281 HN~Al~--n~~-~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 281 HNQALM--NMD-ARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred hHHHHh--ccc-CCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 665432 222 667777777788889999778899999999999999999988743
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.06 E-value=5.9e-05 Score=69.75 Aligned_cols=97 Identities=6% Similarity=-0.070 Sum_probs=86.5
Q ss_pred CCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHH
Q 046194 694 LIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVL 771 (934)
Q Consensus 694 ~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~ 771 (934)
+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++... |+++.|...++++++++|+++..+..
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--g~~~~A~~~y~~Al~l~p~~~~a~~~ 97 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML--KEYTTAINFYGHALMLDASHPEPVYQ 97 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4454 4667888999999999999999987 5556 577889999999999 99999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHh
Q 046194 772 LANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 772 l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++.+|...|+.++|.+.++...+
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.06 E-value=0.00018 Score=84.50 Aligned_cols=196 Identities=13% Similarity=0.144 Sum_probs=161.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--------CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV--------RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTF 665 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 665 (934)
+...|-..|......++++.|++++++... .-...|.++++.-...|.-+...++|+++.+. -| -..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 456666777777888899999998887752 12347888888888889888899999999883 34 3458
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHH
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP---NSLIWRTVLGACC 741 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~ 741 (934)
..|..-|.+.+..++|.++++.|.++++ -....|...++.+.+...-+.|..+++++ ..-| ......-....-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8888899999999999999999999876 56788999999999999999999999876 3333 3445555566666
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
++ ||.+.|+.+++-++.-.|.....|..+++.-.++|.-+.+..+++.....++
T Consensus 1612 k~--GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1612 KY--GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hc--CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 77 9999999999999999999999999999999999999999999999887655
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.02 E-value=0.00055 Score=80.65 Aligned_cols=239 Identities=14% Similarity=0.177 Sum_probs=158.9
Q ss_pred HHHHHHhhccCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----hHHHHHHHHHhchhhHHHHHHHHHH
Q 046194 513 CEKIFARMSERR-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH-----FTFATVLSACASVATLERGMEVHAC 586 (934)
Q Consensus 513 A~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~ 586 (934)
|.+.-..+...| ....|-..|.-..+.++.++|.+++++.+.. +.+.+ ..|.++++.-..-|.-+...++|++
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 333333344445 4556888888888888888888888887664 32221 3444555544445566677777777
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCC---CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--
Q 046194 587 GVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVR---NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-- 661 (934)
Q Consensus 587 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-- 661 (934)
+.+.. ..-.+|..|...|.+.+..++|.++|+.|.++ ....|...+..+.++.+.+.|..++.+..+. -|.
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQE 1598 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhh
Confidence 77642 23456778888888888888888888888742 4558888888888888888888888888774 344
Q ss_pred hhhHHHH-HHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC---CCCCC--HHHHHH
Q 046194 662 HVTFVGV-LSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM---PITPN--SLIWRT 735 (934)
Q Consensus 662 ~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ 735 (934)
.+-+.+- +..-.+.|+.+.|..+|+..... .+.-...|+..+++-.++|..+.++.+|++. ++.|- -..|.-
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 2222221 22234678888888888888774 3333677888888888888888888888876 33332 234555
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 736 VLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
.|..=..+ ||-+..+.+-.++.+
T Consensus 1677 wLeyEk~~--Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1677 WLEYEKSH--GDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHhc--CchhhHHHHHHHHHH
Confidence 55555556 665555555544443
No 122
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=8.6e-06 Score=54.32 Aligned_cols=35 Identities=23% Similarity=0.551 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCc
Q 046194 156 ISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNE 194 (934)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~ 194 (934)
++||+||.+|++.|++++|.++|++|++.|+ +||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~----~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGI----EPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCCC
Confidence 4799999999999999999999999999999 8874
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.013 Score=62.95 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=104.9
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhhCcHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHV-TFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 681 (934)
...|.+.++.+.|...|.+...+-.. -....+....++++...+...- +.|+.. -...=...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 34566667777777776654321100 1111223334555555444433 345431 122224557788888888
Q ss_pred HHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 046194 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNS-LIWRTVLGACCRANCRKTELGRKAANMLF 759 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 759 (934)
+..|.+++.. -+-|...|+.-.-+|.+.|.+.+|++-.+.. ...|+. ..|.--..++... .+++.|..++++.+
T Consensus 378 v~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m--k~ydkAleay~eal 453 (539)
T KOG0548|consen 378 VKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM--KEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 8888888773 2334778888888888888888888776665 445543 3444445555556 88999999999999
Q ss_pred hcCCCCCchHHHHHHHHHcC
Q 046194 760 EMEPQNAVNYVLLANMYASG 779 (934)
Q Consensus 760 ~~~p~~~~~y~~l~~~~~~~ 779 (934)
+.+|++...-..+.+.+...
T Consensus 454 e~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred hcCchhHHHHHHHHHHHHHh
Confidence 99999887777777766654
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.99 E-value=0.06 Score=61.61 Aligned_cols=215 Identities=12% Similarity=0.049 Sum_probs=126.0
Q ss_pred HcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHh--cCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHh
Q 046194 166 SQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAY--SSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFAR 243 (934)
Q Consensus 166 ~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 243 (934)
...+++.+|+....++.+. .||. .|..+++|+. +.|..+. +..+++.....+.. |..|...+-..|..
T Consensus 20 ld~~qfkkal~~~~kllkk------~Pn~-~~a~vLkaLsl~r~gk~~e--a~~~Le~~~~~~~~-D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK------HPNA-LYAKVLKALSLFRLGKGDE--ALKLLEALYGLKGT-DDLTLQFLQNVYRD 89 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH------CCCc-HHHHHHHHHHHHHhcCchh--HHHHHhhhccCCCC-chHHHHHHHHHHHH
Confidence 3457788888888888776 4553 5667777775 5566665 77777777766666 88889999999999
Q ss_pred cCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCCh----hHHHHHHhcCCC
Q 046194 244 LGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTI----DDSRSVFRFMIG 319 (934)
Q Consensus 244 ~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~f~~~~~ 319 (934)
.|+.++|..++++..+.++ +......+..+|++-+++ ..|.+++...++
T Consensus 90 ~~~~d~~~~~Ye~~~~~~P---------------------------~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKYP---------------------------SEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred HhhhhHHHHHHHHHHhhCC---------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999877653 333444555666666555 346677776665
Q ss_pred CCcccHHHHHHHHHhC-CChh---------HHHHHHHHHHHCC-CCCChhhHHHHHHHhhccCchHHHHHHHH-HHhhhC
Q 046194 320 KDSVSWNTMISGLDQN-GCYE---------EAIMNFCAMRRDG-LMSSNFSLISTLSSCASLGWIMLGQQIHG-EGLKLG 387 (934)
Q Consensus 320 ~~~~~~~~li~~~~~~-g~~~---------~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~-~~~~~g 387 (934)
+--.-|+. ++.+.+. ...+ -|.+.++.+.+.+ -.-+..-...-+......+..++|..++. .....-
T Consensus 143 ~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l 221 (932)
T KOG2053|consen 143 RAYYFWSV-ISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKL 221 (932)
T ss_pred ccchHHHH-HHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence 54445543 3444332 1222 2333344444332 11111111122223334555666666652 222222
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhhC
Q 046194 388 LDSDVSVSNALLSLYADAGYLSRCLKVFFLM 418 (934)
Q Consensus 388 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 418 (934)
..-+...-+.-++.+...+++.+-.++-.++
T Consensus 222 ~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 222 TSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred cccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 3334445555666677777666655544443
No 125
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.2e-05 Score=53.64 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 046194 323 VSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSN 357 (934)
Q Consensus 323 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 357 (934)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0025 Score=62.12 Aligned_cols=176 Identities=11% Similarity=0.082 Sum_probs=114.9
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 046194 583 VHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDH 662 (934)
Q Consensus 583 i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 662 (934)
+.+.+.......+......-...|.+.|++++|.+...... +..+.-.=+..+.+..+.+-|.+.+++|.+ --+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchH
Confidence 34444444444443333344456888899999998888743 333332233445566778889999999987 2356
Q ss_pred hhHHHHHHHHHh----hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 046194 663 VTFVGVLSACSH----AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTV 736 (934)
Q Consensus 663 ~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 736 (934)
.|.+.|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+.+..+....|++++|..++++. ....++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 677777776543 4568888888888877 36677777888888888888888888888877 333345555555
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 737 LGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 737 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
+-.-...+ .+.+--.+...++....|+.+
T Consensus 248 iv~a~~~G-kd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLG-KDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhC-CChHHHHHHHHHHHhcCCcch
Confidence 54444442 455566667777777777653
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.00037 Score=67.93 Aligned_cols=150 Identities=11% Similarity=0.107 Sum_probs=92.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhc
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRA 711 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 711 (934)
+-..+...|+.+....+..+.... .|. .......+......|++.+|...|++... .-+||...|+.+.-+|.+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 344455555555555555554331 222 22233355555666666666666666654 3444566666666666666
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH
Q 046194 712 GELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 712 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
|++++|..-|.+. .+.| ++.+.+.|...+... |+.+.|+..+..+....+.|+..-..|+-+....|+.++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~--gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLR--GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc--CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666666555 4444 345566666666666 7777777777777777777777777777777777777777665
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.90 E-value=0.0022 Score=68.13 Aligned_cols=118 Identities=21% Similarity=0.211 Sum_probs=72.5
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~ 749 (934)
....|..++|+..++.+... .+-|+..+....+.+.+.|+.++|.+.++++ ...|+ ...+-++..++... |+..
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~--g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG--GKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc--CChH
Confidence 34456666666666666552 2233555555566666666666666666665 45555 44555666666666 6666
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+|.+..+....-+|+|+..|..|+..|..+|+-.+|...+.+..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 66666666666666666666666666666666666655554443
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.89 E-value=0.00065 Score=79.06 Aligned_cols=143 Identities=10% Similarity=0.053 Sum_probs=116.8
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CCc-ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HH
Q 046194 591 CLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--RNV-YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVT-FV 666 (934)
Q Consensus 591 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 666 (934)
....++..+-.|.......|+.++|..+++...+ ||. ..+..++..+.+.+++++|+..+++... ..|+..+ ..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 3555788888999999999999999999998873 544 4777889999999999999999999998 4788655 44
Q ss_pred HHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 046194 667 GVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTVLG 738 (934)
Q Consensus 667 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 738 (934)
.+..++.+.|.+++|..+|++... -.|+ ...+..+..++-..|+.++|...|++. ...|...-++.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 555678899999999999999987 2344 788999999999999999999999987 34455555554444
No 130
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.89 E-value=0.00041 Score=70.89 Aligned_cols=182 Identities=11% Similarity=-0.001 Sum_probs=121.3
Q ss_pred CCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC-C-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CCcc----cc
Q 046194 559 LDHFTFATVLSACASVATLERGMEVHACGVRACLE-F-DVVIGSALVDMYSKCGRIDYASRFFDLMPV--RNVY----SW 630 (934)
Q Consensus 559 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~ 630 (934)
.....+......+...|+++.|...++.+.+.... | ....+..+...|.+.|++++|...++.+.+ |+.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777778888999999999999998875432 1 124667788999999999999999998863 3222 35
Q ss_pred cHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccH
Q 046194 631 NSMISGYARH--------GHGDKALTLFSQMKLDGPLPDHVT-FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQF 701 (934)
Q Consensus 631 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 701 (934)
..+..++.+. |++++|++.|+++.+. .|+... ...+... .. ... ... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HHH---------HHH
Confidence 5555556554 7889999999999984 676532 2211111 00 000 000 011
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCC
Q 046194 702 SCMVDLLGRAGELDKIEEFINKM----PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEP 763 (934)
Q Consensus 702 ~~li~~l~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p 763 (934)
..+.+.|.+.|++++|...+++. |-.| ....|..+..++... |+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l--g~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL--GLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCC
Confidence 24566777888888888877766 2233 245777777788777 888888887777665554
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.87 E-value=0.00024 Score=65.32 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=72.7
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
......++..+.+.|++++|.+.++.. ...| +...|..+...+... |+.+.|...++.+++++|+++..+..++.+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML--KEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 344556666777777777777777766 3344 456677777777777 888888888888888888888888888999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|...|++++|.+.++...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999998888877664
No 132
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.85 E-value=0.043 Score=55.50 Aligned_cols=173 Identities=9% Similarity=0.038 Sum_probs=111.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046194 492 NETTIENALLSCYGKCGEMDDCEKIFARMSER--RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLS 569 (934)
Q Consensus 492 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 569 (934)
.|...+..-..+|...|++..|+.-+.....- .++.++.-+-..+-.-|+.+.++...++-++ +.||.......
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~-- 262 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF-- 262 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH--
Confidence 35555666777888888888887766654431 2566666677777888999999888888776 46765332111
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CC--cc---cccHHHHHHHHcCC
Q 046194 570 ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--RN--VY---SWNSMISGYARHGH 642 (934)
Q Consensus 570 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~--~~---~~~~li~~~~~~g~ 642 (934)
| ..+.+..+.++.|.+ ....+++.++.+-.+...+ |. .+ .+..+-.+|...|+
T Consensus 263 -Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 263 -Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred -H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 1 112222222222221 2334555555555554432 22 22 34456667778899
Q ss_pred hHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 643 GDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 643 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
+.+|++.-.+..+ +.|| ..++.--..||.-..+++.|+.-|+...+
T Consensus 323 ~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 323 FGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 9999999999988 6777 66777777788888899999999998876
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.84 E-value=0.00043 Score=74.35 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=101.6
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 742 (934)
..+|+..+...++++.|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666777889999999999999874 244 5566888888889999999999887 4344 56666666677777
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
. ++.+.|...++++.++.|.+...|..|+.+|...|++++|.-.+..+.
T Consensus 247 k--~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 K--KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred c--CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7 999999999999999999999999999999999999999998877664
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.82 E-value=2.7e-05 Score=51.47 Aligned_cols=34 Identities=26% Similarity=0.654 Sum_probs=32.0
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCC
Q 046194 155 LISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKP 192 (934)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p 192 (934)
+.+||++|.+|++.|+++.|+++|++|++.|+ +|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv----~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGV----KP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CC
Confidence 46899999999999999999999999999998 77
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.00031 Score=75.37 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=105.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh
Q 046194 596 VVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSH 674 (934)
Q Consensus 596 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 674 (934)
-....+|+..+...++++.|..+|+++.+.++..+-.|+..+...++-.+|++++++..+. .|. ...+..-...|.+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 3444566777778899999999999998877777777888888899999999999999874 454 4444444456889
Q ss_pred hCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 046194 675 AGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKMPITP 728 (934)
Q Consensus 675 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p 728 (934)
.++++.|+++.+++.+ ..|+ ..+|..|+.+|.+.|++++|+..++.+|+.|
T Consensus 247 k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999976 5677 6799999999999999999999999997554
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.79 E-value=0.0024 Score=67.89 Aligned_cols=139 Identities=16% Similarity=0.127 Sum_probs=111.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLS-ACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA 711 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~ 711 (934)
.-.+...|++++|+..++++... .||...|..+.. .+...++.++|.+.++.+.. ..|+ ....-.+.++|.+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhc
Confidence 33455678899999999998884 788777766654 58899999999999999976 5677 55666788999999
Q ss_pred CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 046194 712 GELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKAR 789 (934)
Q Consensus 712 g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 789 (934)
|+..+|...++.. ..+-|+..|..|..+|... |+..++.. ..+..|+..|+|++|....
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~--g~~~~a~~-----------------A~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL--GNRAEALL-----------------ARAEGYALAGRLEQAIIFL 448 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh--CchHHHHH-----------------HHHHHHHhCCCHHHHHHHH
Confidence 9999999999987 3445788999999999999 88665544 4456678889999999988
Q ss_pred HHHHhCC
Q 046194 790 KAMKEAE 796 (934)
Q Consensus 790 ~~m~~~~ 796 (934)
...+++.
T Consensus 449 ~~A~~~~ 455 (484)
T COG4783 449 MRASQQV 455 (484)
T ss_pred HHHHHhc
Confidence 8777653
No 137
>PLN02789 farnesyltranstransferase
Probab=97.78 E-value=0.0016 Score=68.68 Aligned_cols=185 Identities=12% Similarity=0.076 Sum_probs=131.0
Q ss_pred HHHHHhcCCHHHHHHHhccCCCC---CcccccHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCc
Q 046194 603 VDMYSKCGRIDYASRFFDLMPVR---NVYSWNSMISGYARHG-HGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGL 677 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 677 (934)
-..+.+.++.++|+.+.+.+... +..+|+..-..+...| +.++++..++++.+. .|+ ...|..-...+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCc
Confidence 33455667788888888877643 3346666666666667 579999999999985 444 3456555444555665
Q ss_pred --HHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccC-CC----
Q 046194 678 --VDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANC-RK---- 747 (934)
Q Consensus 678 --~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~-~~---- 747 (934)
.++++.+++.+.+ +.|. ...|+....++.+.|++++|++.++++ ...| |..+|+.....+...+. |.
T Consensus 122 ~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 3678888888876 3444 778888888999999999999999998 4444 56788777766654300 11
Q ss_pred cHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC----CChHHHHHHHHHH
Q 046194 748 TELGRKAANMLFEMEPQNAVNYVLLANMYASG----GKWEDVAKARKAM 792 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~----g~~~~a~~~~~~m 792 (934)
.+.......++++++|+|.+.|..+..+|... ++..+|.+.....
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 24567777899999999999999999999884 3445566655443
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=3.8e-05 Score=50.74 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046194 322 SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMS 355 (934)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 355 (934)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=3.2e-05 Score=49.82 Aligned_cols=31 Identities=29% Similarity=0.625 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHccC
Q 046194 156 ISWNSIISVYSQRGDTISVFKLFSRMQREGF 186 (934)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 186 (934)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.58 E-value=0.0071 Score=71.26 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=40.5
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCC
Q 046194 563 TFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGH 642 (934)
Q Consensus 563 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 642 (934)
.+..+..+|.+.|..+++.++++.+++.. +-|+.+.|.+...|+.. ++++|.+++.... ..|...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhc
Confidence 44444445555555555555555555543 22455555555555555 5555555544322 22444445
Q ss_pred hHHHHHHHHHHHH
Q 046194 643 GDKALTLFSQMKL 655 (934)
Q Consensus 643 ~~~A~~l~~~m~~ 655 (934)
+.++.++|.++..
T Consensus 185 ~~~~~e~W~k~~~ 197 (906)
T PRK14720 185 YVGIEEIWSKLVH 197 (906)
T ss_pred chHHHHHHHHHHh
Confidence 5555555555555
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.58 E-value=0.0011 Score=60.78 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=84.7
Q ss_pred HHHHHHHCCCCCCh-hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 046194 649 LFSQMKLDGPLPDH-VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PI 726 (934)
Q Consensus 649 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~ 726 (934)
+|++..+ ..|+. .....+...+...|++++|.+.|+...+. -+.+...+..+...+.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 35553 33555666778888999999998888762 2334677888888888899999999888876 44
Q ss_pred CC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 727 TP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 727 ~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
.| +...|..+...+... |+.+.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLAL--GEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhccccchH
Confidence 45 456677777777777 99999999999999999987653
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.52 E-value=0.0001 Score=47.35 Aligned_cols=31 Identities=35% Similarity=0.665 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Q 046194 52 VSWACIVSGYTHKGMSNEACKMFKEMVRAGF 82 (934)
Q Consensus 52 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 82 (934)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.39 E-value=0.049 Score=64.50 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhC
Q 046194 392 VSVSNALLSLYADAGYLSRCLKVFFLM 418 (934)
Q Consensus 392 ~~~~~~li~~y~~~g~~~~A~~~f~~~ 418 (934)
...+..|+..|...+++++|.++.+..
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~ 57 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEH 57 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345566666666666666666665543
No 144
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.001 Score=66.21 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=73.5
Q ss_pred HHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCC
Q 046194 670 SACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCR 746 (934)
Q Consensus 670 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~ 746 (934)
.-..+.+++++|+..|...++ +.|+ ..-|..=..+|.+.|.++.|++-.+.. .+.|. ...|..|.-++... |
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~--g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL--G 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc--C
Confidence 345677888888888888876 5666 555566678888888888888887776 66776 44788888888888 8
Q ss_pred CcHHHHHHHHHHHhcCCCCCch
Q 046194 747 KTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 747 ~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
++++|+++|+++++++|+|...
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHH
Confidence 8888888888888888888643
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.38 E-value=0.0013 Score=55.58 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=72.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+... ++.+.|...++.+.+..|.++..+..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL--GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 455667777788888888888776 44443 35666677777777 889999999999999999888888999999999
Q ss_pred CCChHHHHHHHHHHHh
Q 046194 779 GGKWEDVAKARKAMKE 794 (934)
Q Consensus 779 ~g~~~~a~~~~~~m~~ 794 (934)
.|++++|.+.++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999888776653
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.36 E-value=0.0032 Score=58.42 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=26.1
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKA 791 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 791 (934)
|+++.|...++.. .-.+-.+..+..++++|.+.|++++|...++.
T Consensus 99 ~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 99 GQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555554331 12223345566777777777777777776654
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.36 E-value=0.002 Score=69.64 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=46.4
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCc
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKT 748 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 748 (934)
+...|++++|+..|+++.+ ..|+ ...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|... |++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l--g~~ 86 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL--EEY 86 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh--CCH
Confidence 4445555555555555544 2232 344444455555555555555555544 3333 233444444444444 555
Q ss_pred HHHHHHHHHHHhcCCCCCchHHH
Q 046194 749 ELGRKAANMLFEMEPQNAVNYVL 771 (934)
Q Consensus 749 ~~a~~~~~~~~~~~p~~~~~y~~ 771 (934)
+.|...++++++++|+++.....
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 55555555555555555444433
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.0015 Score=65.07 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=85.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcC
Q 046194 635 SGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAG 712 (934)
Q Consensus 635 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g 712 (934)
.-+.+.+++++|+..|.+.++ +.|+ .+-|..=..+|++.|.++.|++-.+.... +.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 346678999999999999999 5665 56677777789999999999998877765 6777 789999999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 046194 713 ELDKIEEFINKM-PITPNSLIWRTVLGACCR 742 (934)
Q Consensus 713 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 742 (934)
++++|.+.|++. .+.|+-.+|.+=|.....
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 999999999987 889987777655554443
No 149
>PRK15331 chaperone protein SicA; Provisional
Probab=97.31 E-value=0.0031 Score=57.62 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=86.4
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 046194 703 CMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGG 780 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 780 (934)
....-+-..|++++|..+|.-+ -..| +..-|..|...|... ++++.|...+..+..++++||.++...+..|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~--k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK--KQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3444556789999999988876 2233 344577777777777 99999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHH
Q 046194 781 KWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRD 841 (934)
Q Consensus 781 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 841 (934)
+.++|.+.+....+ +|+...+.++...+.+.+++
T Consensus 120 ~~~~A~~~f~~a~~---------------------------~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 120 KAAKARQCFELVNE---------------------------RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred CHHHHHHHHHHHHh---------------------------CcchHHHHHHHHHHHHHHHc
Confidence 99999999887763 35556666666666666654
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.30 E-value=0.00024 Score=58.71 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=50.2
Q ss_pred CChHHHHHHHHhC-CCC---CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH
Q 046194 712 GELDKIEEFINKM-PIT---PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAK 787 (934)
Q Consensus 712 g~~~~A~~~~~~m-~~~---p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 787 (934)
|++++|+.+++++ ... |+...|-.+..++... |+.+.|..++++ .+.+|.++.....++.+|.+.|++++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~--~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ--GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT--THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC--CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5556666666555 122 2344555566666666 777777777777 66666666666777888888888888888
Q ss_pred HHHH
Q 046194 788 ARKA 791 (934)
Q Consensus 788 ~~~~ 791 (934)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
No 151
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.024 Score=55.51 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=41.2
Q ss_pred HHhcCCHHHHHHHhccCCCCC-cccccHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHH
Q 046194 606 YSKCGRIDYASRFFDLMPVRN-VYSWNSMISGYAR----HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDE 680 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 680 (934)
+.|..+++-|.+.++.|.+-| -.+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....+|...|++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 334444555555555554322 2234444444332 22345555555555543 34555555555555555555555
Q ss_pred HHHHHHHhHH
Q 046194 681 GFKHFKSMSQ 690 (934)
Q Consensus 681 a~~~~~~m~~ 690 (934)
|..+++....
T Consensus 226 Ae~lL~eaL~ 235 (299)
T KOG3081|consen 226 AESLLEEALD 235 (299)
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.019 Score=55.71 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=110.7
Q ss_pred HHHhcCCHHHHHHHhccCCCCCcccccHH---HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 605 MYSKCGRIDYASRFFDLMPVRNVYSWNSM---ISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
+...+|+.+.|...++.+...-+.++... ..-+-..|++++|+++++...+.+ +.|.+++.-=+...-..|+.-+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 33455666666666655543222222221 112345688889999999988875 44567776666666777888888
Q ss_pred HHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcc-CCCcHHHHHHHHHH
Q 046194 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRAN-CRKTELGRKAANML 758 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~-~~~~~~a~~~~~~~ 758 (934)
++-+....+. +.-|.+.|.-+.+.|...|++++|.--++++ -+.| ++..+..|.......+ ..|++.+...+.++
T Consensus 140 Ik~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 140 IKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888874 6677889999999999999999999888888 3455 3445555555555441 14677888999999
Q ss_pred HhcCCCCCch
Q 046194 759 FEMEPQNAVN 768 (934)
Q Consensus 759 ~~~~p~~~~~ 768 (934)
+++.|.+...
T Consensus 218 lkl~~~~~ra 227 (289)
T KOG3060|consen 218 LKLNPKNLRA 227 (289)
T ss_pred HHhChHhHHH
Confidence 9999966443
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.25 E-value=0.0032 Score=56.14 Aligned_cols=98 Identities=8% Similarity=0.027 Sum_probs=44.9
Q ss_pred HHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 046194 668 VLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACC 741 (934)
Q Consensus 668 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~ 741 (934)
+...+...|++++|.+.|..+.+.+.-.|. ...+..+..++.+.|++++|.+.+++. ...|+ ..++..+...+.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 333444445555555555544432111010 123333444555555555555555443 11222 234444444555
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
.. |+.+.|...++.+++..|+++.
T Consensus 88 ~~--~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 88 EL--GDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred Hh--CChHHHHHHHHHHHHHCcCChh
Confidence 55 5666666666666666665543
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.23 E-value=0.0075 Score=55.98 Aligned_cols=114 Identities=16% Similarity=0.104 Sum_probs=54.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhhcCC
Q 046194 640 HGHGDKALTLFSQMKLDGPLPDH----VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGRAGE 713 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~ 713 (934)
.++...+...++++.+. .|+. .....+...+...|++++|...|+..... ...|. ....-.|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 45555555555555553 2222 11222233455556666666666655553 21121 1123334555555666
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 046194 714 LDKIEEFINKMPIT-PNSLIWRTVLGACCRANCRKTELGRKAANML 758 (934)
Q Consensus 714 ~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~ 758 (934)
+++|+..++..+.. ..+..+..+...+... |+.+.|..+++++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~--g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQ--GDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHC--CCHHHHHHHHHHh
Confidence 66666666554211 1233444444455555 6666666665554
No 155
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.017 Score=56.13 Aligned_cols=158 Identities=13% Similarity=0.101 Sum_probs=122.6
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLS-ACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLL 708 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l 708 (934)
|..++-+....|+.+.|...++++... + |.+.-...+=. -+...|.+++|++++++..++ -+-|..+|--=+-++
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 344555666789999999999999886 2 66544332222 256789999999999999884 233466666666677
Q ss_pred hhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh---H
Q 046194 709 GRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW---E 783 (934)
Q Consensus 709 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~---~ 783 (934)
-..|+--+|++-+.+. .+..|...|.-|...|... |+++.|.-.++.++=++|.++..+..++++++-.|-. +
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~--~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE--GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 7788777888777666 5677899999999999999 9999999999999999999999999999999888854 4
Q ss_pred HHHHHHHHHH
Q 046194 784 DVAKARKAMK 793 (934)
Q Consensus 784 ~a~~~~~~m~ 793 (934)
-|.+.+....
T Consensus 209 ~arkyy~~al 218 (289)
T KOG3060|consen 209 LARKYYERAL 218 (289)
T ss_pred HHHHHHHHHH
Confidence 4555555444
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.22 E-value=0.0069 Score=68.46 Aligned_cols=139 Identities=12% Similarity=0.011 Sum_probs=62.5
Q ss_pred CCCcccccHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhh--------CcHHHHHHHHHHhH
Q 046194 624 VRNVYSWNSMISGYARH-----GHGDKALTLFSQMKLDGPLPDH-VTFVGVLSACSHA--------GLVDEGFKHFKSMS 689 (934)
Q Consensus 624 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 689 (934)
..|...|...+.+.... ++.++|+.+|++..+ ..||. ..+..+..++... ..+..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34556666666654432 226688899999888 46773 3343332222111 01122222222211
Q ss_pred HhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 690 QVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 690 ~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
..-....+...|..+.-.....|++++|...++++ ...|+...|..+...+... |+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~--G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELK--GDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCc
Confidence 10001112233444433333444555555555444 3444444444444444444 555555555555555555444
No 157
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.42 Score=53.97 Aligned_cols=339 Identities=11% Similarity=-0.002 Sum_probs=178.8
Q ss_pred CCCCCChhhHHH-----HHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHhhCCC--
Q 046194 351 DGLMSSNFSLIS-----TLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGY---LSRCLKVFFLMPE-- 420 (934)
Q Consensus 351 ~g~~p~~~t~~~-----ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~-- 420 (934)
-|+..+..-|.. +++-+...+.+..|.++-..+-..-... ..++.....-+.+..+ .+-+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 355555544433 4455556666677777666553322122 4566666666666532 2334444444444
Q ss_pred CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcC----CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhH
Q 046194 421 HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAG----WSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTI 496 (934)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 496 (934)
.+.++|..+.+--.+.|+. +-|..+++.=.+.+ +-.+-..+...+.-+...|+.+...++.-++.+.-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~-~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~------- 576 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRF-ELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL------- 576 (829)
T ss_pred CCceeHHHHHHHHHhcCcH-HHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-------
Confidence 4567777777777777887 77777765322111 11122334555666667777777776665554321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHH------HHcCCCCCHhHHHHHHHH
Q 046194 497 ENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFM------MQRGQRLDHFTFATVLSA 570 (934)
Q Consensus 497 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~g~~p~~~t~~~ll~a 570 (934)
+.-+.+.-..+...|..++.....+-|..+ +-+.| +.++..+++..|.-= ...|..|+. ...-.+
T Consensus 577 --~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~ 647 (829)
T KOG2280|consen 577 --NRSSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANA 647 (829)
T ss_pred --HHHHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHH
Confidence 011111112223344444444333201111 11112 222222222222110 012333333 233334
Q ss_pred HhchhhHHHHH-------HH---HHHHH-HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHH
Q 046194 571 CASVATLERGM-------EV---HACGV-RACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYAR 639 (934)
Q Consensus 571 ~~~~~~~~~a~-------~i---~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 639 (934)
|++.....-+. ++ ...+. +.|....--+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 44433321111 11 11111 122222222333344445667888889998888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHH
Q 046194 640 HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~ 719 (934)
.+++++-+++-+.+. + .+-|.-...+|.+.|+.+||.+++-+... +.-.+.+|.+.|++.+|.+
T Consensus 728 ~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKYIPRVGG----------LQEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhhhhccCC----------hHHHHHHHHHhccHHHHHH
Confidence 888887766554432 2 46677788889999999999888755422 1246788888898888877
Q ss_pred HHHh
Q 046194 720 FINK 723 (934)
Q Consensus 720 ~~~~ 723 (934)
+--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 6544
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.18 E-value=0.0033 Score=56.00 Aligned_cols=95 Identities=14% Similarity=0.038 Sum_probs=79.8
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC---CchHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN---AVNYV 770 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~y~ 770 (934)
..+..++..+.+.|++++|.+.++++ ...|+ ...+..+...+... |+++.|...++.+....|++ +..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ--GKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 45667788899999999999999988 33343 34566677888888 99999999999999998886 55789
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 771 LLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 771 ~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.++.+|...|++++|.+.++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.18 E-value=0.00089 Score=52.85 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC-ChHHHHHHHHHHHh
Q 046194 729 NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGG-KWEDVAKARKAMKE 794 (934)
Q Consensus 729 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g-~~~~a~~~~~~m~~ 794 (934)
++.+|..+...+... |+++.|+..++++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~--~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ--GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 467888888888888 99999999999999999999999999999999999 79999988877654
No 160
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.11 E-value=0.47 Score=52.79 Aligned_cols=315 Identities=14% Similarity=0.109 Sum_probs=145.2
Q ss_pred cCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCc----ccHHHHHHHHhccCCchHHHH
Q 046194 405 AGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNG----VTFINILAAASSFSMGKLGHQ 480 (934)
Q Consensus 405 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~ 480 (934)
-|.+++|.+++-.+..+|.. |..+.+.|++ -...++++. -|-..|. ..+..+-..++....++.|.+
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDw-frV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDW-FRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhH-HHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666665532 3334444444 333333321 1111111 233344444444444555554
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046194 481 VHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD 560 (934)
Q Consensus 481 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 560 (934)
.+.+--.. ...+++|.+...+++-+.+-..+++ |....-.|...+...|.-++|.+.|-+-- .|
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe--~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p- 881 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE--DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP- 881 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc--ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-
Confidence 44332111 2345555555555555555555544 44445556666667777777666553321 11
Q ss_pred HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC-----------CcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCc--
Q 046194 561 HFTFATVLSACASVATLERGMEVHACGVRACLE-----------FDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNV-- 627 (934)
Q Consensus 561 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-----------~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-- 627 (934)
...+.+|..++.+.+|.++-+...-..+. .+..+ .--|.++.+.|+.-+|-+++.+|.++..
T Consensus 882 ----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K 956 (1189)
T KOG2041|consen 882 ----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEK 956 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhc
Confidence 13445666666666665543321100000 00000 1135667777777777777777653211
Q ss_pred -ccccHHHHHHH----HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHH
Q 046194 628 -YSWNSMISGYA----RHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFS 702 (934)
Q Consensus 628 -~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 702 (934)
+-|-.+=..|. -..++.++++-.++....|...|... +...|...++-++.+..-. | ....||-
T Consensus 957 ~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFm 1025 (1189)
T KOG2041|consen 957 YVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFM 1025 (1189)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHH
Confidence 11221111121 11233444444454444554333221 1233333444444332211 1 2244555
Q ss_pred HHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 703 CMVDLLGRAGELDKIEEFINKM----PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
.|..--...|..+.|++.--.+ .+-|...+|..|.-+.+.. ..+...-+++-++...+
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~--raFGtCSKAfmkLe~~e 1087 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV--RAFGTCSKAFMKLEAFE 1087 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh--hhhhhhHHHHHHHHhhh
Confidence 5666667788999888654333 3445555665444333333 44555555665555444
No 161
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.07 E-value=0.00033 Score=45.79 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHH
Q 046194 755 ANMLFEMEPQNAVNYVLLANMYASGGKWEDVA 786 (934)
Q Consensus 755 ~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~ 786 (934)
++++++++|+|+..|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999985
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.99 E-value=0.0055 Score=51.50 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=51.9
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLL 708 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l 708 (934)
|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|.+.|+..... ...+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence 344555666667777777777776653 333 244555555566666777777766666542 122234555555566
Q ss_pred hhcCChHHHHHHHHhC
Q 046194 709 GRAGELDKIEEFINKM 724 (934)
Q Consensus 709 ~~~g~~~~A~~~~~~m 724 (934)
...|++++|.+.+++.
T Consensus 79 ~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 79 YKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 6666666666555543
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.99 E-value=0.013 Score=56.25 Aligned_cols=127 Identities=12% Similarity=0.126 Sum_probs=74.8
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPD--HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMV 705 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li 705 (934)
.|..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++..+ +.|+ ...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 555666666667777777777777665432222 23455555666667777777777766655 2233 44455555
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 046194 706 DLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
.+|...|+...+..-++.. . ..++.|...++++.+++|++ |..+...+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~--~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------E--ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------H--HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5666666555544322211 0 23567788888888888877 5555555555554
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.96 E-value=0.0052 Score=58.98 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=57.4
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLA 773 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~ 773 (934)
..|..+...+.+.|++++|...+++. ...|+ ...|..+...+... |+.+.|...++++++..|.++..+..++
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN--GEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34555556666666666666666655 22222 34677777777777 8888888888888888888888888888
Q ss_pred HHHHcCCC
Q 046194 774 NMYASGGK 781 (934)
Q Consensus 774 ~~~~~~g~ 781 (934)
.+|...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 88888776
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.93 E-value=0.024 Score=59.35 Aligned_cols=131 Identities=15% Similarity=0.236 Sum_probs=70.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHc-CChHHHHHHHHHHHHC----CCCCC--hhhHHHHHHHH
Q 046194 600 SALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARH-GHGDKALTLFSQMKLD----GPLPD--HVTFVGVLSAC 672 (934)
Q Consensus 600 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~ 672 (934)
.-.++.|.+.|++..|-+.+.. +...|-.. |++++|++.|++..+. | .|. ...+..+...+
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHH
Confidence 3345566677777666665544 34455555 6777777777776542 2 111 23355556667
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCC-----c-ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC------CHHHHHHHHHH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQ-----L-EQFSCMVDLLGRAGELDKIEEFINKM-PITP------NSLIWRTVLGA 739 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~-----~-~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~ 739 (934)
...|++++|.++|++.... .+..+ . ..|-..+-++...|+...|.+.+++. ...| .......|+.+
T Consensus 166 ~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 7778888888888777653 12111 1 12233344555567777777777765 2222 13355666666
Q ss_pred HHhc
Q 046194 740 CCRA 743 (934)
Q Consensus 740 ~~~~ 743 (934)
|...
T Consensus 245 ~~~~ 248 (282)
T PF14938_consen 245 YEEG 248 (282)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 6554
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.92 E-value=0.002 Score=50.04 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=44.4
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 737 LGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 737 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
...+... |+++.|+..++.+++.+|+++..+..++.++...|++++|..+++.+.+
T Consensus 4 a~~~~~~--g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQ--GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHC--THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556 8888888888888888888888888888888888888888888887754
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.92 E-value=0.0048 Score=59.00 Aligned_cols=93 Identities=10% Similarity=-0.103 Sum_probs=70.7
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
...|..++..+...|++++|...+++. .+.|+ ..+|..+...+... |+.++|...++++++++|.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~--g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN--GEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 445566666777778888888877766 33332 34788888888888 999999999999999999998888888
Q ss_pred HHHHH-------cCCChHHHHHHHHHH
Q 046194 773 ANMYA-------SGGKWEDVAKARKAM 792 (934)
Q Consensus 773 ~~~~~-------~~g~~~~a~~~~~~m 792 (934)
+.+|. ..|++++|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 88888 888888766655443
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.91 E-value=0.74 Score=48.60 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcH
Q 046194 599 GSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLV 678 (934)
Q Consensus 599 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 678 (934)
.+.-|.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-..+... +-.++-|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455667788999999999888889999999999999999999887765432 22347888899999999999
Q ss_pred HHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046194 679 DEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGAC 740 (934)
Q Consensus 679 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 740 (934)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+. -|...+..+...|
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHC
Confidence 9998887653 1255678899999999998765554 2444444444443
No 169
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.91 E-value=0.28 Score=50.88 Aligned_cols=284 Identities=16% Similarity=0.106 Sum_probs=186.7
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHhhccC--CCcchHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046194 496 IENALLSCYGK--CGEMDDCEKIFARMSER--RDEVSWNSMISG--YIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLS 569 (934)
Q Consensus 496 ~~~~li~~~~~--~g~~~~A~~~~~~~~~~--p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 569 (934)
-|.+|-.++.. .|+-..|.++-.+...- -|....--++.+ -.-.|+++.|.+-|+.|... ..--...+..+.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHH
Confidence 35666666644 57777788776654421 144444444433 34579999999999999863 1112233344444
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC-----CCCcc--cccHHHHHHHH---
Q 046194 570 ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP-----VRNVY--SWNSMISGYAR--- 639 (934)
Q Consensus 570 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~--- 639 (934)
...+.|+.+.|.++-+..-..-.. -.-...+.++..+..|+++.|+++++.-. ++|+. .-..|+.+-+.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 445778888888887776553221 34566788999999999999999998754 34543 33344443332
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHH
Q 046194 640 HGHGDKALTLFSQMKLDGPLPDHVT-FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~ 718 (934)
.-+...|...-.+..+ +.||-+- -..-..++.+.|++.++-.+++.+-+ ..|.+..+... .+.|.|+. +.
T Consensus 242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY--~~ar~gdt--a~ 312 (531)
T COG3898 242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLY--VRARSGDT--AL 312 (531)
T ss_pred cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHH--HHhcCCCc--HH
Confidence 3456777777777666 6788543 33445678999999999999999865 45666544332 23455543 33
Q ss_pred HHHHhC----CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC-CChHHHHHHHHHH
Q 046194 719 EFINKM----PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASG-GKWEDVAKARKAM 792 (934)
Q Consensus 719 ~~~~~m----~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~-g~~~~a~~~~~~m 792 (934)
.-+++. .++|| ....-++..+-... |++..|...++.+..+.|.. +.|.+|+++-... |+-.++..++-+.
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda--~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDA--GEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhc--cchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 333322 34565 44556666777777 99999999999999999975 7899999987666 8888877765444
Q ss_pred H
Q 046194 793 K 793 (934)
Q Consensus 793 ~ 793 (934)
.
T Consensus 390 v 390 (531)
T COG3898 390 V 390 (531)
T ss_pred h
Confidence 3
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.90 E-value=0.0093 Score=64.57 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=85.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA 711 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~ 711 (934)
...+...|++++|+.+|+++++. .|+ ...|..+..++...|++++|+..++.+.. +.|+ ...|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 45567789999999999999985 555 56677777889999999999999999977 4554 77888999999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 046194 712 GELDKIEEFINKM-PITPNSLIWRTVLGACCR 742 (934)
Q Consensus 712 g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 742 (934)
|++++|...+++. .+.|+......++..|..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999987 677776666666666643
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.88 E-value=0.37 Score=50.83 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhH
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATL 577 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 577 (934)
+..|.-+...|+...|.++-.+..- ||..-|-..|.+++..++|++-.++-. . +-+++.|-.++.+|...|..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~----s--kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAK----S--KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHh----C--CCCCCChHHHHHHHHHCCCH
Confidence 3445556677888888888777755 488889999999999999987666532 1 23458888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHh
Q 046194 578 ERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFF 619 (934)
Q Consensus 578 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 619 (934)
.+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 8887776651 1245678888888888886653
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.85 E-value=0.013 Score=61.06 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=97.7
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA-CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDL 707 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 707 (934)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 57777888888888889999999988532 2223334433333 333566777999999999864 4456778888999
Q ss_pred HhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 708 LGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
+.+.|+.+.|..+|++. ..-|. ..+|...+.-=..+ |+++....+.+++.+.-|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~--Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY--GDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999987 33333 35999999999999 9999999999999999888543
No 173
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.84 E-value=1 Score=49.09 Aligned_cols=439 Identities=11% Similarity=0.131 Sum_probs=236.6
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHH
Q 046194 321 DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMS-SNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALL 399 (934)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 399 (934)
|+.+|+.||.-+-.. .++++.+.+++|.. .-| ....|..-+..-....+++.++.+|+..+..-+. ...|...+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl 93 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYL 93 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHH
Confidence 889999999976555 99999999999986 444 4456777788888889999999999888776544 55555555
Q ss_pred HHHHh-cCChHHH----HHHHhh------CCCCCccchHHHHHH---------HHhCCccHHHHHHHHHHHHHcCCCCCc
Q 046194 400 SLYAD-AGYLSRC----LKVFFL------MPEHDQVSWNSVIGA---------FADSEALVSEAVKYYLDMRRAGWSPNG 459 (934)
Q Consensus 400 ~~y~~-~g~~~~A----~~~f~~------~~~~~~~~~~~li~~---------~~~~g~~~~~A~~l~~~m~~~g~~p~~ 459 (934)
+.--+ .|+...+ .+.|+- |.-.+-..|+.-|.- |.++.+. +...++++++....+.
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI-~~vRriYqral~tPm~--- 169 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRI-TAVRRIYQRALVTPMH--- 169 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHH-HHHHHHHHHHhcCccc---
Confidence 43222 1222221 111111 111223334444332 2233333 4444455544432110
Q ss_pred ccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc------C--CC------
Q 046194 460 VTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE------R--RD------ 525 (934)
Q Consensus 460 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--p~------ 525 (934)
++ .+++..-.......+..+..-++ --+...+..|+++.+++.. + |.
T Consensus 170 --------------nl---EkLW~DY~~fE~~IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 170 --------------NL---EKLWKDYEAFEQEINIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred --------------cH---HHHHHHHHHHHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 00 01111110000001111111111 0112234445555554433 1 10
Q ss_pred ------cchHHHHHHHHHhcCCh--------hHHHHHHHH-HHHcCCCCCHhH-HHHHHH----HHhchhh-------HH
Q 046194 526 ------EVSWNSMISGYIHNELL--------PKAMNLVWF-MMQRGQRLDHFT-FATVLS----ACASVAT-------LE 578 (934)
Q Consensus 526 ------~~~~~~li~~~~~~g~~--------~~A~~l~~~-m~~~g~~p~~~t-~~~ll~----a~~~~~~-------~~ 578 (934)
+..|-.+|.-=..++.- ....=.+++ |.-.+..|+..- +...+. .+...|+ -+
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 11144444322221111 001111111 222344444321 111111 1222333 34
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC---CHHHHHHHhccCC----CCCcccccHHHHHHHHcCChHHHHHHHH
Q 046194 579 RGMEVHACGVRACLEFDVVIGSALVDMYSKCG---RIDYASRFFDLMP----VRNVYSWNSMISGYARHGHGDKALTLFS 651 (934)
Q Consensus 579 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~ 651 (934)
++..+++..+..-...+..+|.++.+.--..- ..+.....+++.. ..-..+|-..+..-.+..-.+.|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 45555555444333334444444433211111 1233333444333 1223478888888888888999999999
Q ss_pred HHHHCCCCC-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC---CCC
Q 046194 652 QMKLDGPLP-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM---PIT 727 (934)
Q Consensus 652 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m---~~~ 727 (934)
+..+.+..+ +.....+++.-++ .++.+-|.++|+.=.+.||-.| .--.+.++-+.+.|+-..|..+|++. .+.
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 999998888 4455566665444 5789999999999887665443 34456788899999999999999987 245
Q ss_pred CC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC----CchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 728 PN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN----AVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 728 p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
|+ ..+|..+|.-=..- ||+.....+-++....-|.+ ...-..+.+-|.-.+.+..-..-++.|
T Consensus 468 ~~ks~~Iw~r~l~yES~v--GdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNV--GDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhhhHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 54 46899999988888 99999999888877666622 123456666777777666554444444
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.75 E-value=0.0031 Score=49.56 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|+++.|...++++++.+|+++..+..++.+|.+.|++++|.++++.+..
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999888776653
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.72 E-value=0.024 Score=47.90 Aligned_cols=79 Identities=15% Similarity=-0.010 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHhHHHHHHHHHhch--------hhHHHHHHHHHHHHHhCCCCcHhHHH
Q 046194 530 NSMISGYIHNELLPKAMNLVWFMMQRGQ-RLDHFTFATVLSACASV--------ATLERGMEVHACGVRACLEFDVVIGS 600 (934)
Q Consensus 530 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~--------~~~~~a~~i~~~~~~~~~~~~~~~~~ 600 (934)
...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++. +.+-..+.+++.++..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666667889999999999999999 89999999999887653 24556778888899999999999999
Q ss_pred HHHHHHHh
Q 046194 601 ALVDMYSK 608 (934)
Q Consensus 601 ~li~~y~~ 608 (934)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98877664
No 176
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.71 E-value=0.018 Score=48.61 Aligned_cols=80 Identities=16% Similarity=0.051 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHhhccC--------chHHHHHHHHHHhhhCCCCchhHH
Q 046194 325 WNTMISGLDQNGCYEEAIMNFCAMRRDGL-MSSNFSLISTLSSCASLG--------WIMLGQQIHGEGLKLGLDSDVSVS 395 (934)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~~ 395 (934)
-...|..+..++++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-....+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566667777999999999999999999 999999999999887543 244567888999999999999999
Q ss_pred HHHHHHHHh
Q 046194 396 NALLSLYAD 404 (934)
Q Consensus 396 ~~li~~y~~ 404 (934)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.70 E-value=0.022 Score=54.41 Aligned_cols=78 Identities=9% Similarity=-0.012 Sum_probs=50.0
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPD--HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMV 705 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li 705 (934)
.|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+..++...+ +.|+ ...+..+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~la 113 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 556666667777888888888887776422221 23566677777788888888888877765 2333 44455555
Q ss_pred HHHh
Q 046194 706 DLLG 709 (934)
Q Consensus 706 ~~l~ 709 (934)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 178
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.016 Score=60.14 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=66.1
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 046194 706 DLLGRAGELDKIEEFINKM-PITP-----NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASG 779 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~ 779 (934)
+-..+.|++.+|.+.+.+. .+.| ++..|.....+..+. |+..+|..-.+.+++++|.-...|..-++.+...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL--grl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL--GRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc--CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 3456778888888888776 4444 444555555556666 8888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHh
Q 046194 780 GKWEDVAKARKAMKE 794 (934)
Q Consensus 780 g~~~~a~~~~~~m~~ 794 (934)
++|++|.+-++...+
T Consensus 335 e~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999988887776654
No 179
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.67 E-value=0.13 Score=54.50 Aligned_cols=160 Identities=17% Similarity=0.135 Sum_probs=103.9
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCC---Ccc----cccHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPVR---NVY----SWNSMISGYAR---HGHGDKALTLFSQMKLDGPLPDHVTFVGVLS 670 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 670 (934)
.|+-.|....+++.-.++++.+... ++. .--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777888888888777643 111 11123344455 7888999999988666656777778776666
Q ss_pred HHHh---------hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHH----HHHHH---Hh-C------CCC
Q 046194 671 ACSH---------AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDK----IEEFI---NK-M------PIT 727 (934)
Q Consensus 671 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~----A~~~~---~~-m------~~~ 727 (934)
.|-. ....++|+..|.+. |.+.|+..+--.++.++.-.|.-.+ ..++- .. . .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5432 22467777777765 4566775554455555555554222 22222 11 1 123
Q ss_pred CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 728 PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 728 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
.|.....+++.++... ||.+.+.+++++++.+.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~--~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLA--GDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhcCCcc
Confidence 4666778999999999 99999999999999998876
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.66 E-value=0.29 Score=53.91 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=61.1
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 602 LVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 602 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
-.+++...|+.++|..+. ..+|..+-++++-+++-. .+..+...+..-+.+...+.-|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 445666677777776543 345555555555555433 2233444444444556667778
Q ss_pred HHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH
Q 046194 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMP-ITPNS 730 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~ 730 (934)
-++|.+|-. ...++++....|+|++|..+-++.| ..||+
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 888888754 2467888888899999988888874 45554
No 181
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.65 E-value=2 Score=49.90 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=114.0
Q ss_pred CChhHHHHHHhcCCCCCc-ccHHHHHHHH--HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHH
Q 046194 305 GTIDDSRSVFRFMIGKDS-VSWNTMISGL--DQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHG 381 (934)
Q Consensus 305 g~~~~A~~~f~~~~~~~~-~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 381 (934)
+++..|....+.+.++.+ ..|...+.++ .+.|+.++|..+++.....+.. |..|...+-..+...+..+++..+++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 444555555444433211 2233333333 3566666666666655444333 55566666666666666666666666
Q ss_pred HHhhhCCCCchhHHHHHHHHHHhcCChH----HHHHHHhhCCCCCccchHHHHHHHHhCC---------ccHHHHHHHHH
Q 046194 382 EGLKLGLDSDVSVSNALLSLYADAGYLS----RCLKVFFLMPEHDQVSWNSVIGAFADSE---------ALVSEAVKYYL 448 (934)
Q Consensus 382 ~~~~~g~~~~~~~~~~li~~y~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~~g---------~~~~~A~~l~~ 448 (934)
.+.+. .|+......+..+|.|.+.+. .|.++++..+++--..|+.+ +.+.+.- -++.-|.+.++
T Consensus 102 ~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 102 RANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHH
Confidence 66543 344555556666666665554 35566665555444444432 2222211 11133444555
Q ss_pred HHHHcCCC-CCcccHHHHHHHHhccCCchHHHHHHHH-HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 046194 449 DMRRAGWS-PNGVTFINILAAASSFSMGKLGHQVHAQ-VIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER 523 (934)
Q Consensus 449 ~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~-~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 523 (934)
.+.+.+.+ -+..-...-+......+..++|..++.. ....-..-+...-+--++.+.+++++.+-.++-.++..+
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 55544311 1111222233445567778888888744 333333445555567778888888888877777777665
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.057 Score=54.51 Aligned_cols=102 Identities=16% Similarity=0.106 Sum_probs=85.3
Q ss_pred CC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-cCCCcHHHHHHHHHHHhcCCCCCchHHH
Q 046194 696 PQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRA-NCRKTELGRKAANMLFEMEPQNAVNYVL 771 (934)
Q Consensus 696 p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~y~~ 771 (934)
|+ .+.|-.|...|.+.|++++|..-|.+. .+.| ++.++..+..++... +.....++..++++++.++|.|......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 44 889999999999999999999999887 4444 566777777766554 2245678899999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 772 LANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 772 l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
|+-.+...|++.+|...++.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987543
No 183
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.64 E-value=1.1 Score=46.76 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=107.2
Q ss_pred cCCHHHHHHHHHhhccCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHH
Q 046194 507 CGEMDDCEKIFARMSERRDEVS--WNSMISGYIHNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEV 583 (934)
Q Consensus 507 ~g~~~~A~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i 583 (934)
.|+.++|.+-|+.|...|..-. ...|.-.--+.|..+-|...-.+.-. .-|. .......+...+..|+++.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 4666666666666665432211 11111122335555555555444433 2232 24455566666666666666666
Q ss_pred HHHHHHh-CCCCcHhHHH--HHHHHHH---hcCCHHHHHHHhccCC--CCCccc-ccHHHHHHHHcCChHHHHHHHHHHH
Q 046194 584 HACGVRA-CLEFDVVIGS--ALVDMYS---KCGRIDYASRFFDLMP--VRNVYS-WNSMISGYARHGHGDKALTLFSQMK 654 (934)
Q Consensus 584 ~~~~~~~-~~~~~~~~~~--~li~~y~---~~g~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~ 654 (934)
.+..... -+.+++.--. .|+.+-+ -.-+...|...-.+.. .||.+- --.-..++.+.|+..++-.+++.+.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 6654432 2333322111 1111100 0112222222222221 234332 1222345566666666666666666
Q ss_pred HCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH
Q 046194 655 LDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLI 732 (934)
Q Consensus 655 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~ 732 (934)
+....|+.- .+-...+.|+ .++.=++...+--.++|| .+..-.+..+-.-.|++..|..--+.. ...|...+
T Consensus 291 K~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~ 364 (531)
T COG3898 291 KAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA 364 (531)
T ss_pred hcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence 654444421 1111223333 222222222222234454 444445555555566666555444443 34555555
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
|.-|...-.... ||..+.....-+.++
T Consensus 365 ~lLlAdIeeAet-GDqg~vR~wlAqav~ 391 (531)
T COG3898 365 YLLLADIEEAET-GDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhhcc-CchHHHHHHHHHHhc
Confidence 555544333322 555555554444443
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.60 E-value=0.0062 Score=47.28 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=45.1
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 704 MVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 704 li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+... |+++.|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~--g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ--GRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCC
Confidence 355677788888888888877 55564 55777777777777 888888888888888888764
No 185
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.60 E-value=0.052 Score=49.62 Aligned_cols=88 Identities=7% Similarity=-0.059 Sum_probs=49.8
Q ss_pred cHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHH
Q 046194 631 NSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLL 708 (934)
Q Consensus 631 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l 708 (934)
-.+..-+.+.|++++|..+|+-+.. +.|. ..-|..|..+|-..|++++|+..|..... +.|+ +..+-.+..++
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHH
Confidence 3344445556666666666666655 3444 33344455555666666666666666644 3344 55555566666
Q ss_pred hhcCChHHHHHHHHh
Q 046194 709 GRAGELDKIEEFINK 723 (934)
Q Consensus 709 ~~~g~~~~A~~~~~~ 723 (934)
...|+.+.|.+-|+.
T Consensus 114 L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 114 LACDNVCYAIKALKA 128 (157)
T ss_pred HHcCCHHHHHHHHHH
Confidence 666666666655544
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.59 E-value=0.023 Score=61.57 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=56.3
Q ss_pred CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC---CCcchH
Q 046194 455 WSPNGVTFINILAAASSFSMGKLGHQVHAQVIKY--NVANETTIENALLSCYGKCGEMDDCEKIFARMSER---RDEVSW 529 (934)
Q Consensus 455 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~ 529 (934)
.+.+...+..+++.+....+++.+..++-..... ....-+.+..++|..|.+.|..+.+..+++.=..- ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3444555555555555555555555554444332 11112222235555555555555555554433332 455555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 046194 530 NSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACA 572 (934)
Q Consensus 530 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 572 (934)
|.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555555555555444444444444444443
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.57 E-value=0.049 Score=61.71 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=95.4
Q ss_pred CCCChhhHHHHHHHHHhh-----CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc--------CChHHHHHHHHh
Q 046194 658 PLPDHVTFVGVLSACSHA-----GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA--------GELDKIEEFINK 723 (934)
Q Consensus 658 ~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~--------g~~~~A~~~~~~ 723 (934)
.+.|...|...+.+.... +..+.|..+|++..+ ..|+ ...|..+..++... ++++.+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455677888888875442 237789999999986 6788 45555554444322 223445555554
Q ss_pred C---C-CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 724 M---P-ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 724 m---~-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
. + ...++.++.++.-..... |+.++|...++++++++| +...|..++.+|...|+.++|.+.+++....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~--g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVK--GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3 2 233456677765555566 999999999999999999 5789999999999999999999998877643
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.54 E-value=0.0067 Score=48.43 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=48.6
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
..+... ++++.|..+++.+++++|+++..+...+.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQ--EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhC--CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345566 89999999999999999999999999999999999999999998887754
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.51 E-value=0.038 Score=59.93 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=74.2
Q ss_pred CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHh--CCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC----CCCccc
Q 046194 556 GQRLDHFTFATVLSACASVATLERGMEVHACGVRA--CLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP----VRNVYS 629 (934)
Q Consensus 556 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~ 629 (934)
+.+.+...+..+++.+.+..+++.+..++-..... ....-..+..++|..|.+.|..+.|..+++.=. -||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34455666666666666666666666665555443 222223344467777777777777777666543 266667
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHA 675 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 675 (934)
+|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776666666666665555555544
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.49 E-value=0.11 Score=54.37 Aligned_cols=118 Identities=15% Similarity=0.210 Sum_probs=74.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-CcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHH
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHA-GLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDL 707 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~ 707 (934)
.+..|...|++..|-..+.+ +...|... |++++|++.|++..+.|.-... ...+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 34556666666665554444 44456666 8999999999988775433333 4566778899
Q ss_pred HhhcCChHHHHHHHHhCC---C-----CCCHH--HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 708 LGRAGELDKIEEFINKMP---I-----TPNSL--IWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m~---~-----~p~~~--~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
+.+.|++++|.++|++.. . +.+.. .+.++| .+... ||...|...+++..+.+|.-..+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~--~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAM--GDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHT--T-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHc--CCHHHHHHHHHHHHhhCCCCCCc
Confidence 999999999999998861 1 11221 122222 22233 89999999999999999865443
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.40 E-value=0.046 Score=48.08 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=66.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHh
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPD--HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLG 709 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~ 709 (934)
+..++-..|+.++|+.+|++..+.|.... ...+..+.+++...|++++|..+|+.....+.-.+. ......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567788999999999999999886655 345667778899999999999999988875322111 122223445778
Q ss_pred hcCChHHHHHHHHh
Q 046194 710 RAGELDKIEEFINK 723 (934)
Q Consensus 710 ~~g~~~~A~~~~~~ 723 (934)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999877644
No 192
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.39 E-value=0.065 Score=51.34 Aligned_cols=117 Identities=20% Similarity=0.195 Sum_probs=71.6
Q ss_pred CCHhHHHHHHHHHh-----chhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHH
Q 046194 559 LDHFTFATVLSACA-----SVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSM 633 (934)
Q Consensus 559 p~~~t~~~ll~a~~-----~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 633 (934)
.|..+|..++..+. +.|.++-....+..|.+.|++-|..+|+.|++.+=| |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 34444444444443 234555555667777778888888888888877665 3221 11111111
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCc-HHHHHHHHHHhHH
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL-VDEGFKHFKSMSQ 690 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~ 690 (934)
-.- ...+-+-|++++++|...|+-||..|+..|+..+.+.+. +.+..++.-.|.+
T Consensus 112 F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 112 FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 001 123456799999999999999999999999998877664 3334444444444
No 193
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.36 E-value=2.4 Score=47.52 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=25.6
Q ss_pred HHhhccCChhHHHHHHhcCCCC-----CcccHHHHHHHHHhCCChhHHHHHHHHH
Q 046194 299 NMYAKCGTIDDSRSVFRFMIGK-----DSVSWNTMISGLDQNGCYEEAIMNFCAM 348 (934)
Q Consensus 299 ~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m 348 (934)
.++.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-
T Consensus 768 elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 768 ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555432111 1235666666666666666666655543
No 194
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.33 E-value=0.0074 Score=49.77 Aligned_cols=80 Identities=14% Similarity=0.248 Sum_probs=56.2
Q ss_pred cCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHH
Q 046194 640 HGHGDKALTLFSQMKLDGPL-PDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKI 717 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A 717 (934)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57889999999999885321 2344455577888899999999999888 2 22333 34444557888899999999
Q ss_pred HHHHHh
Q 046194 718 EEFINK 723 (934)
Q Consensus 718 ~~~~~~ 723 (934)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888865
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.31 E-value=0.27 Score=49.90 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC-CCcch----HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046194 500 LLSCYGKCGEMDDCEKIFARMSER-RDEVS----WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSA 570 (934)
Q Consensus 500 li~~~~~~g~~~~A~~~~~~~~~~-p~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 570 (934)
....+.+.|++++|.+.|+.+... |+... .-.+..+|.+.+++++|...|++..+.-..-...-+...+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 344456678899999999888775 43321 123556778888999999999888875332223344444443
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.26 E-value=0.005 Score=48.34 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=40.5
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVL 737 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 737 (934)
...|++++|+++|+.+... .| +...+..++.+|.+.|++++|.++++++ ...|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3567778888888777663 34 4666667777777777777777777777 4556654444443
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.22 E-value=0.39 Score=44.59 Aligned_cols=142 Identities=12% Similarity=0.128 Sum_probs=100.1
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHH
Q 046194 642 HGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEF 720 (934)
Q Consensus 642 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~ 720 (934)
++++.+.-..+-.+ +.|....-..|..+....|+..||...|++... |+-. |....-.+.++....++..+|...
T Consensus 71 dP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 71 DPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred ChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 44444433333333 467766667788888889999999999888877 5543 466666777788888889898888
Q ss_pred HHhC-C-----CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 721 INKM-P-----ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 721 ~~~m-~-----~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
+++. . -.||. --.+...+... |..+.|+.+++.++..-|. +..-...+..+.++|+.++|..-...+
T Consensus 147 Le~l~e~~pa~r~pd~--~Ll~aR~laa~--g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 147 LEDLMEYNPAFRSPDG--HLLFARTLAAQ--GKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHhhcCCccCCCCc--hHHHHHHHHhc--CCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 8876 2 23443 23445566666 8999999999999988875 566667778899999888876544443
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.21 E-value=0.44 Score=52.55 Aligned_cols=243 Identities=10% Similarity=0.046 Sum_probs=122.7
Q ss_pred CccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhH
Q 046194 230 DLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDD 309 (934)
Q Consensus 230 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 309 (934)
....|.-|.......=+++-|++.+.+.... .|-.++..+ ....+.|-.|+.... ...++-.|++.+
T Consensus 584 v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl---~~L~li~EL-------~~~k~rge~P~~iLl---A~~~Ay~gKF~E 650 (1081)
T KOG1538|consen 584 TDTDWRELAMEALEALDFETARKAYIRVRDL---RYLELISEL-------EERKKRGETPNDLLL---ADVFAYQGKFHE 650 (1081)
T ss_pred ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc---HHHHHHHHH-------HHHHhcCCCchHHHH---HHHHHhhhhHHH
Confidence 3444555555555566666666666655432 111111111 112344555665543 345566788888
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCC
Q 046194 310 SRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLD 389 (934)
Q Consensus 310 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 389 (934)
|.++|. ++|....|+++|..|+--. ..+-+...|+.++-+.+...-.+. .
T Consensus 651 AAklFk------------------~~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~W--A 700 (1081)
T KOG1538|consen 651 AAKLFK------------------RSGHENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRADW--A 700 (1081)
T ss_pred HHHHHH------------------HcCchhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHHH--h
Confidence 888775 4566677777777665311 112222333333333332221111 1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 046194 390 SDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAA 469 (934)
Q Consensus 390 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 469 (934)
.|+.--.+...++...|+.++|..+.-+ +|-. +-+.++-+++- ..+..+...+..-+
T Consensus 701 r~~kePkaAAEmLiSaGe~~KAi~i~~d------------------~gW~-d~lidI~rkld----~~ere~l~~~a~yl 757 (1081)
T KOG1538|consen 701 RNIKEPKAAAEMLISAGEHVKAIEICGD------------------HGWV-DMLIDIARKLD----KAEREPLLLCATYL 757 (1081)
T ss_pred hhcCCcHHHHHHhhcccchhhhhhhhhc------------------ccHH-HHHHHHHhhcc----hhhhhHHHHHHHHH
Confidence 1111112334555566666666554321 2222 33333333222 22334444444555
Q ss_pred hccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHHHHHHHhcCChhHHHHH
Q 046194 470 SSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYIHNELLPKAMNL 548 (934)
Q Consensus 470 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l 548 (934)
-+...+..|-++|..+-.. .+++++....+++++|..+-++.++- ||+ |..-..-++...++++|.+.
T Consensus 758 k~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dV--y~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDV--YMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred hhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccc--cchHHHHhhhhhhHHHHHHH
Confidence 5666677777777665433 46788888899999999988888774 333 22223334445555555443
Q ss_pred H
Q 046194 549 V 549 (934)
Q Consensus 549 ~ 549 (934)
|
T Consensus 827 f 827 (1081)
T KOG1538|consen 827 F 827 (1081)
T ss_pred H
Confidence 3
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.12 E-value=0.025 Score=58.45 Aligned_cols=128 Identities=10% Similarity=0.006 Sum_probs=91.5
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHH---hHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-------C-CCCCHH
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKS---MSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-------P-ITPNSL 731 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-------~-~~p~~~ 731 (934)
.|..|...|.-.|+++.|+...+. +.++||-... ...++.+..++.-.|+++.|.+.++.. + -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 355555555667889999877654 3344555444 567888999999999999999988764 2 122345
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhc----C--CCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEM----E--PQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
.--+|...|... .+++.|+.+..+-+.+ + ......+..|++.|...|..+.|..+.+.-.
T Consensus 277 scYSLgNtytll--~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLL--KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566788888887 8888888887764333 2 2345678999999999999999988766544
No 200
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.09 E-value=0.075 Score=55.41 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=32.0
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C----CcccccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 594 FDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R----NVYSWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 594 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
.+...+...++.+.+.++.+.|+.+|++... + -...|...+.-=.+.|+.+.+..+.+++.+
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555556666666666666666665442 1 112455555555555555555555555555
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.99 E-value=0.011 Score=46.58 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=42.1
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHhcCC
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCR-KTELGRKAANMLFEMEP 763 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~-~~~~a~~~~~~~~~~~p 763 (934)
..|..+...+.+.|++++|+..|++. ...|+ +.+|..+..++... | +.++|...++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~--~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL--GKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHcCc
Confidence 44556666666677777777666665 44453 45666666666666 7 67788888888877776
No 202
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.96 E-value=2.9 Score=44.75 Aligned_cols=453 Identities=11% Similarity=0.070 Sum_probs=235.3
Q ss_pred HHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCC
Q 046194 241 FARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGK 320 (934)
Q Consensus 241 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 320 (934)
+-+.+++.+|+++|.++...-..+- .+.. .....+.++++|.-. +++..........+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~-----------f~lk---------eEvl~grilnAffl~-nld~Me~~l~~l~~~ 74 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSP-----------FLLK---------EEVLGGRILNAFFLN-NLDLMEKQLMELRQQ 74 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcch-----------HHHH---------HHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 4578899999999998864321110 0000 122334556666432 333333333333221
Q ss_pred -CcccHHHHHHHH--HhCCChhHHHHHHHHHHHC--CCCC------------ChhhHHHHHHHhhccCchHHHHHHHHHH
Q 046194 321 -DSVSWNTMISGL--DQNGCYEEAIMNFCAMRRD--GLMS------------SNFSLISTLSSCASLGWIMLGQQIHGEG 383 (934)
Q Consensus 321 -~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p------------~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 383 (934)
....|-.+..++ -+.+.+.+|++.+..-... +-.| |-.-=.....+....|.+.+|+.++..+
T Consensus 75 ~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 75 FGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred cCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 133455555554 3678889999888776654 3222 1111233445667888999999888877
Q ss_pred hhhCC----CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCc
Q 046194 384 LKLGL----DSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNG 459 (934)
Q Consensus 384 ~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~ 459 (934)
...=+ ..+..+|+.++-++++.=-++- -+.+...=..-|--||..|.+.=.. ++.-.=..+-|..
T Consensus 155 ~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~-------~d~~~Y~k~~pee 223 (549)
T PF07079_consen 155 IERLLKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHA-------FDQRPYEKFIPEE 223 (549)
T ss_pred HHHHhhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHH-------HhhchHHhhCcHH
Confidence 65543 4788888888877766422111 1111111112244444444322111 1100001233444
Q ss_pred ccHHHHHHHHhcc--CCchHHHHHHHHHHHhcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHhhc--------cCCCcch
Q 046194 460 VTFINILAAASSF--SMGKLGHQVHAQVIKYNVANETT-IENALLSCYGKCGEMDDCEKIFARMS--------ERRDEVS 528 (934)
Q Consensus 460 ~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p~~~~ 528 (934)
..+..++....-. ..+..-.+++..-.+.-+.|+-. +...|++-+.+ +.+++..+.+.+. ++ -+.+
T Consensus 224 eL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~-li~~ 300 (549)
T PF07079_consen 224 ELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEE-LIDR 300 (549)
T ss_pred HHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence 4444444433222 22333344444444555555433 34455555554 4444444433332 22 4556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHH-------HHHHHHh-ch---hhHHHHHHHHHHHHHhCCCCcHh
Q 046194 529 WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFA-------TVLSACA-SV---ATLERGMEVHACGVRACLEFDVV 597 (934)
Q Consensus 529 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-------~ll~a~~-~~---~~~~~a~~i~~~~~~~~~~~~~~ 597 (934)
+..++...++.++..+|-+.+.-+.. ..|+...-. .+-+..+ .- .++..-..+++.+....++...-
T Consensus 301 F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQL 378 (549)
T PF07079_consen 301 FGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQL 378 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 78888888888888888887766654 233322111 1111111 11 12222233444444433332111
Q ss_pred H-H-HHHHHHHHhcCC-HHHHHHHhccCCC---CCcccccHHH----HHHHH---cCChHHHHHHHHHHHHCCCCCChhh
Q 046194 598 I-G-SALVDMYSKCGR-IDYASRFFDLMPV---RNVYSWNSMI----SGYAR---HGHGDKALTLFSQMKLDGPLPDHVT 664 (934)
Q Consensus 598 ~-~-~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t 664 (934)
+ | .--..-|.+.|. -+.|.++++.+.+ -|..+-|... .+|.+ .....+-+.+-+-..+.|+.|-.+.
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 1 1 111233445555 6778888877652 3444333322 12222 1223444455555667788875443
Q ss_pred ----HHHHHHH--HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 046194 665 ----FVGVLSA--CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRT 735 (934)
Q Consensus 665 ----~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ 735 (934)
-+.|..| +...|++.++..+-.... .+.|++.+|..++-++....+++||.+++.+.| |+..+|++
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 3334443 456789998887655554 488999999999999999999999999999974 56666554
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.89 E-value=0.68 Score=43.03 Aligned_cols=113 Identities=11% Similarity=0.082 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC----CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHH
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPV----RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD---HVTFVGVLSACS 673 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~ 673 (934)
.|.......|+..+|...|++... .|....-.+..+....+++..|..+++.+.+.. |+ ..+...+...+.
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHHH
Confidence 344444444444444444444321 222233333344444455555555555555431 22 112333444555
Q ss_pred hhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHH
Q 046194 674 HAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 674 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~ 718 (934)
..|...+|..-|+.... .-|+...-......+.+.|+.++|.
T Consensus 172 a~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 172 AQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 56666666666665554 2244444344445555666555554
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.80 E-value=0.1 Score=45.86 Aligned_cols=83 Identities=11% Similarity=-0.017 Sum_probs=50.6
Q ss_pred HHHhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 046194 706 DLLGRAGELDKIEEFINKM---PITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ---NAVNYVLLANMYA 777 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~y~~l~~~~~ 777 (934)
.++-..|+.++|..++++. +..+. ...+-.+.+.++.. |+.++|..+++...+-.|+ +......++-++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L--G~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL--GRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3444555555555555544 22221 22444566666666 7777777777777776666 5555666777777
Q ss_pred cCCChHHHHHHHH
Q 046194 778 SGGKWEDVAKARK 790 (934)
Q Consensus 778 ~~g~~~~a~~~~~ 790 (934)
..|++++|.+.+-
T Consensus 87 ~~gr~~eAl~~~l 99 (120)
T PF12688_consen 87 NLGRPKEALEWLL 99 (120)
T ss_pred HCCCHHHHHHHHH
Confidence 8888888776643
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.77 E-value=0.054 Score=55.41 Aligned_cols=57 Identities=12% Similarity=0.238 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc----ccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL----EQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
|...+......|++++|...|+.+.+.| |+. ..+-.+..+|...|++++|...|+++
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4433333344566666666666666543 331 23444445555555555555554444
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.77 Score=45.16 Aligned_cols=138 Identities=12% Similarity=0.021 Sum_probs=101.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhC-----CCCcHhHHHH
Q 046194 527 VSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRAC-----LEFDVVIGSA 601 (934)
Q Consensus 527 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~ 601 (934)
...+.++..+.-.+.+.-.+.++++.++...+-+......+.+.--+.|+.+.|...++.+.+.. +.....+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34456677777788888888999998887666677777888888888999999999999776643 3333444444
Q ss_pred HHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 046194 602 LVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFV 666 (934)
Q Consensus 602 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 666 (934)
....|.-..++..|...|++++. .|++.-|.-.-+....|+..+|++..+.|.+. -|...+-.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 44556677888888888887764 45666777666777788999999999999884 45544433
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.72 E-value=0.11 Score=49.84 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=65.8
Q ss_pred CcchHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----------------hhhHHHHHHH
Q 046194 525 DEVSWNSMISGYIH-----NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACAS----------------VATLERGMEV 583 (934)
Q Consensus 525 ~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----------------~~~~~~a~~i 583 (934)
|..+|..+|..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+-+ ..+-+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 66667777766654 35666667777888888888888888888887643 1245678888
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 046194 584 HACGVRACLEFDVVIGSALVDMYSKCGR 611 (934)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~li~~y~~~g~ 611 (934)
+++|...|+.||..++..|++.+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 9999999999999999988888876654
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.52 E-value=0.086 Score=53.94 Aligned_cols=91 Identities=16% Similarity=0.190 Sum_probs=53.9
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPDH----VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCM 704 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 704 (934)
|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+..++...|++++|...|+.+.+.|.-.|. ...+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 344444445567888888888888874 4554 35556777788888888888888888775432222 2223333
Q ss_pred HHHHhhcCChHHHHHHHH
Q 046194 705 VDLLGRAGELDKIEEFIN 722 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~ 722 (934)
+..+...|+.++|.+.++
T Consensus 224 g~~~~~~g~~~~A~~~~~ 241 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQ 241 (263)
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333434444444444433
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.48 E-value=0.051 Score=58.38 Aligned_cols=63 Identities=10% Similarity=-0.066 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch---HHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 730 SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN---YVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 730 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
...|..+..++... |++++|...++++++++|+++.. |..++.+|...|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~l--GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSK--GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666655 66666666666666666665533 56666666666666666655555544
No 210
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.16 Score=53.43 Aligned_cols=82 Identities=13% Similarity=0.205 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCE
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDG 811 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 811 (934)
.+..|...+.+. +++..|.....++++++|+|.-....-+.+|...|+++.|...++++.+
T Consensus 259 ~~lNlA~c~lKl--~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 259 CHLNLAACYLKL--KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HhhHHHHHHHhh--hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 456666666777 8999999999999999999999999999999999999999999998874
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHH
Q 046194 812 VHVFVAGDESHPEKDLIYEKLKELNQKMRD 841 (934)
Q Consensus 812 ~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 841 (934)
..|.+..+..+|..|.+++++
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHH
Confidence 467778888888888777765
No 211
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.33 E-value=1.3 Score=44.97 Aligned_cols=67 Identities=9% Similarity=-0.118 Sum_probs=43.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH--HHHHHHHHhchhhHHHHHHHHHHHHHhC
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT--FATVLSACASVATLERGMEVHACGVRAC 591 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 591 (934)
+...+-.....+.+.|++++|.+.|+++...-..+.... .-.+..++-+.++++.|...++..++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 333344455566778999999999999988532222111 1234456677788888888888777753
No 212
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=7.7 Score=44.99 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=40.3
Q ss_pred CChHHHHHHh-hccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccc
Q 046194 138 ESTDCARRIF-EEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGS 212 (934)
Q Consensus 138 g~~~~a~~~f-~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~ 212 (934)
|++++|...+ +.+..-+ =..+|.-|.......+--..++.+.+.|. .+..--..||.++.+.++.+.
T Consensus 382 gdf~~A~~qYI~tI~~le---~s~Vi~kfLdaq~IknLt~YLe~L~~~gl-----a~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 382 GDFDEATDQYIETIGFLE---PSEVIKKFLDAQRIKNLTSYLEALHKKGL-----ANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred CCHHHHHHHHHHHcccCC---hHHHHHHhcCHHHHHHHHHHHHHHHHccc-----ccchhHHHHHHHHHHhcchHH
Confidence 7777776655 3332211 12355556666666666677777777774 455555667777777776554
No 213
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.26 E-value=0.025 Score=39.67 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 731 LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 731 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
.+|..+..++... |+.+.|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~--G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRL--GQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3577888888888 99999999999999999999888877764
No 214
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.11 E-value=4 Score=40.69 Aligned_cols=193 Identities=19% Similarity=0.158 Sum_probs=110.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhccCC-----CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046194 596 VVIGSALVDMYSKCGRIDYASRFFDLMP-----VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLS 670 (934)
Q Consensus 596 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 670 (934)
..........+...+.+..+...+.... ......+..+...+...++...++..+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444455555566666666665555433 12233444555555566666677777766665332221 11222222
Q ss_pred -HHHhhCcHHHHHHHHHHhHHhhCCCC----CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 046194 671 -ACSHAGLVDEGFKHFKSMSQVYGLIP----QLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN--SLIWRTVLGACCR 742 (934)
Q Consensus 671 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~ 742 (934)
.+...|.++++...|..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56667777777777776633 222 1233333334455667777777777665 33333 4566666666666
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
. ++.+.+...+..+.+..|.....+..++..+...|.++++...+.....
T Consensus 215 ~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 L--GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred c--ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 6777777777777777777555666666666666667777766555543
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.09 E-value=0.26 Score=43.86 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=40.0
Q ss_pred CCCCCcccHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 046194 693 GLIPQLEQFSCMVDLLGRAGELDKIEEFINKM----PITPNSLIWRTVLGACCRA 743 (934)
Q Consensus 693 ~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~ 743 (934)
.+.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.=+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 45577788888888888888888888887765 6666688888888866665
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=8.5 Score=44.06 Aligned_cols=124 Identities=11% Similarity=0.141 Sum_probs=85.8
Q ss_pred HHHHHHHHHC-CCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCC
Q 046194 647 LTLFSQMKLD-GPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMP 725 (934)
Q Consensus 647 ~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 725 (934)
+.+++.+..+ |..-...|.+--+.-+...|...+|.++-.+. .+ ||...|-.=+.+++..++|++-+++-+++.
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----ki-pdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KI-PDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CC-cchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 3444444332 33344556666677777888888888775444 22 787778777888888899988888887762
Q ss_pred CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH
Q 046194 726 ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 726 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
. +.-|.-+..+|... |+.++|.+++-+.-.+. -.+.+|.+.|++.+|.+.
T Consensus 743 s---PIGy~PFVe~c~~~--~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 743 S---PIGYLPFVEACLKQ--GNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred C---CCCchhHHHHHHhc--ccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHH
Confidence 1 34455577788888 88888888776653332 567888888999988776
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.85 E-value=0.079 Score=42.10 Aligned_cols=63 Identities=10% Similarity=0.226 Sum_probs=43.2
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHH
Q 046194 706 DLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYV 770 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~ 770 (934)
..|.+.+++++|.+.++.+ ...|+ +..|......+... |+++.|...++.+++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL--GRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4566777777777777776 45554 44555555566666 8888888888888888887655443
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.78 E-value=1.9 Score=37.77 Aligned_cols=140 Identities=15% Similarity=0.139 Sum_probs=85.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKI 717 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 717 (934)
.-.|..++..++..+...+ .+..-++-+|.-...+-+-+-..+.++++-+-|.+.|-. ..-.++.+|.+.|...|
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHH-
Confidence 3467788888888887763 234445555555555566666777777776654443321 12334555555554433
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 718 EEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 718 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
....-+.+.... |.-+.-.+.+..+.+-+..+|....-++++|.+.|...++.+++++.-++|+
T Consensus 88 --------------~vD~ALd~lv~~--~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 --------------YVDLALDILVKQ--GKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHT--T-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred --------------HHHHHHHHHHHh--ccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 233445666667 8888888899888887778899999999999999999999999999988887
Q ss_pred c
Q 046194 798 K 798 (934)
Q Consensus 798 ~ 798 (934)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.67 E-value=1 Score=44.46 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=37.4
Q ss_pred HHHHHhcCCHHHHHHHHHhhccC-CCc----chHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046194 501 LSCYGKCGEMDDCEKIFARMSER-RDE----VSWNSMISGYIHNELLPKAMNLVWFMMQR 555 (934)
Q Consensus 501 i~~~~~~g~~~~A~~~~~~~~~~-p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 555 (934)
...+...|++++|.+.|+.+..+ |+. .+.-.++.++-+.|++++|...|++.+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456678888888888888764 321 23445667788888888888888887764
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.67 E-value=0.44 Score=44.16 Aligned_cols=106 Identities=15% Similarity=0.201 Sum_probs=70.9
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCC--CCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLI--PQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~--p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~ 749 (934)
....|+.+.+...++.+..-|.=. |+... ........+.++++ -..+...++..+... |+.+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~--~~~~ 79 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEA--GDYE 79 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHT--T-HH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhc--cCHH
Confidence 355677788888877777654211 11111 11222223333332 123455677777778 9999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
.+...++.++..+|-+...|..+..+|...|+..+|.++++.+.
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988775
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.95 Score=44.54 Aligned_cols=135 Identities=12% Similarity=0.055 Sum_probs=86.8
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHH----
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCM---- 704 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l---- 704 (934)
.-++++..+.-+|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|+...+..+ ..+....+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 44567777777888888999999998865455566677777778889999999999998776422 2333333333
Q ss_pred -HHHHhhcCChHHHHHHHHhCCC-CCCHHHH---HHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 705 -VDLLGRAGELDKIEEFINKMPI-TPNSLIW---RTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 705 -i~~l~~~g~~~~A~~~~~~m~~-~p~~~~~---~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
...+.-++++.+|...+.+.+. .|...++ .+|...|. |+...|.+..+.+.+..|....+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl----g~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL----GKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH----HHHHHHHHHHHHHhccCCccchh
Confidence 3344556677777777766632 2222222 22333332 67777777777777777764443
No 222
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.40 E-value=8.8 Score=41.32 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=57.7
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 718 EEFINKMPITP----NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 718 ~~~~~~m~~~p----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
..++++.++.| +..+-|-|..|=.-..+|++.++.-...-+.++.| .+.+|-++|-.+....++++|...+..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44566666666 34456666665433222999999999999999999 8999999999999999999999987655
No 223
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=13 Score=42.96 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 046194 393 SVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASS 471 (934)
Q Consensus 393 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 471 (934)
.++..+|+.+.-.|++++|-...-.|...+..-|.--+..+...++. .....+ +....-+.+...|..+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l-~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL-TDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc-chhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 45667788888889999999988888888888888777777777665 333222 1111122344556666666555
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.25 E-value=0.11 Score=41.83 Aligned_cols=60 Identities=15% Similarity=0.288 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhh---CC-CCC-cccHHHHHHHHhhcCChHHHHHHHHh
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVY---GL-IPQ-LEQFSCMVDLLGRAGELDKIEEFINK 723 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~-~p~-~~~y~~li~~l~~~g~~~~A~~~~~~ 723 (934)
++..+...+...|++++|+.+|++..+.. |- .|+ ..++..|..++.+.|++++|++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555556666666666655554321 10 011 33444555555555555555555543
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.08 E-value=1.9 Score=42.44 Aligned_cols=60 Identities=8% Similarity=-0.040 Sum_probs=38.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHhHHHHHHHHHhchhhHHHHHHHHHHHHHh
Q 046194 531 SMISGYIHNELLPKAMNLVWFMMQRGQRL--DHFTFATVLSACASVATLERGMEVHACGVRA 590 (934)
Q Consensus 531 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 590 (934)
.....+.+.|++++|.+.|+++...-... -......+..++-+.|+++.|...++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455677899999999999988752211 1234445566677777777777777776664
No 226
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.01 E-value=7.2 Score=47.07 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHH
Q 046194 508 GEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACG 587 (934)
Q Consensus 508 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 587 (934)
+++++|..-+.++. ...|.-.+.---++|.+.+|+.+ .+|+...+..+..+|++. +
T Consensus 894 ~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~h------------L 949 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADH------------L 949 (1265)
T ss_pred HHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHH------------H
Confidence 44555555555443 22344444444456666666665 356666666655554431 1
Q ss_pred HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh--H
Q 046194 588 VRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVT--F 665 (934)
Q Consensus 588 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~ 665 (934)
.+. ..++--.-+|.++|+.++|.+ +|...|+|.+|+.+..+|.. .-|... -
T Consensus 950 ~~~------~~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a 1002 (1265)
T KOG1920|consen 950 REE------LMSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILA 1002 (1265)
T ss_pred HHh------ccccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHH
Confidence 111 111223346788888888865 45567899999998888753 223222 2
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
..|.+-+...++.-+|-++..+...+ +.--+..|+++-.|++|..+....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 45667788888888888887666543 344577888888899998877665
No 227
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.00 E-value=7.1 Score=38.79 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhccCCC--CCc-ccccHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----ChhhHHHH
Q 046194 597 VIGSALVDMYSKCGRIDYASRFFDLMPV--RNV-YSWNSMIS-GYARHGHGDKALTLFSQMKLDGPLP----DHVTFVGV 668 (934)
Q Consensus 597 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~l 668 (934)
..+..+...+...+....+.+.+..... ++. ..+..... .+...|+++.|...|.+... ..| ....+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 173 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHh
Confidence 3333444444455555555555554442 111 12222222 67788888888888888855 333 23334444
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccC
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANC 745 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~ 745 (934)
...+...++.+++...+...... ... ....+..+...+...|.+++|...+... ...|+ ...+..+...+...
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL-- 249 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc--
Confidence 44466788899999998888763 333 3677888888888899999999888877 44554 55666666666644
Q ss_pred CCcHHHHHHHHHHHhcCCC
Q 046194 746 RKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~ 764 (934)
++.+.+....++..+..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 7789999999999999887
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=93.95 E-value=1.8 Score=47.00 Aligned_cols=141 Identities=11% Similarity=0.110 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHH-CCCCCCh-hhHHHHHHHHHh---------hCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhh
Q 046194 643 GDKALTLFSQMKL-DGPLPDH-VTFVGVLSACSH---------AGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGR 710 (934)
Q Consensus 643 ~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~ 710 (934)
.+.|+.+|.+... +.+.|+- ..|..+..++.. .....+|.+.-+...+ +.|+ +.....+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4578888888872 2356763 333333222111 2234556666555554 3443 6667777777788
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH--HHHcCCChHHHH
Q 046194 711 AGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLAN--MYASGGKWEDVA 786 (934)
Q Consensus 711 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~--~~~~~g~~~~a~ 786 (934)
.|+++.|..+|++. .+.|| +.+|......+... |+.++|....+++++++|.....-+.--+ .|+.. ..++|.
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~--G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN--EKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88899999999887 56776 44566666666666 99999999999999999987655444333 44444 456666
Q ss_pred HHH
Q 046194 787 KAR 789 (934)
Q Consensus 787 ~~~ 789 (934)
+++
T Consensus 428 ~~~ 430 (458)
T PRK11906 428 KLY 430 (458)
T ss_pred HHH
Confidence 553
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.91 E-value=0.32 Score=43.27 Aligned_cols=97 Identities=12% Similarity=0.176 Sum_probs=70.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH 674 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 674 (934)
|..++.++|-++++.|+++....+.+..-..|+. +-...+. --......|+..+..+++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 3456777888888888888888877654322211 0000000 11234478999999999999999
Q ss_pred hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHH
Q 046194 675 AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDL 707 (934)
Q Consensus 675 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 707 (934)
.|++..|+++.+...+.|+++-+...|..|+.-
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999988888888888763
No 230
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=1.2 Score=45.30 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=71.9
Q ss_pred ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcC---ChHHHHHHHHhC-CCCCCHHH-HH
Q 046194 661 DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAG---ELDKIEEFINKM-PITPNSLI-WR 734 (934)
Q Consensus 661 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g---~~~~A~~~~~~m-~~~p~~~~-~~ 734 (934)
|...|..|..+|...|+.+.|..-|....+ +.|+ +..+..+..++.... ...++.++|+++ ...|+.+. ..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 467788888888888888888888888765 3333 666666666554332 455778888887 66665554 44
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 735 TVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 735 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
-|.-.+... |++.+|...++++++..|.+..
T Consensus 232 lLA~~afe~--g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQ--GDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHc--ccHHHHHHHHHHHHhcCCCCCc
Confidence 444466666 8999999999999888887754
No 231
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=6.2 Score=41.85 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=74.4
Q ss_pred HHHcCChHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcC
Q 046194 637 YARHGHGDKALTLFSQMKLD---GPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAG 712 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g 712 (934)
..+.|++.+|.+.|.+.+.. +++|+...|.....+..+.|+.++|+.--+...+ +.|. +..|-.-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776652 2233334455555556667777777766555433 3333 233333334444456
Q ss_pred ChHHHHHHHHhC-CCCCC---H---------------HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch-----
Q 046194 713 ELDKIEEFINKM-PITPN---S---------------LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN----- 768 (934)
Q Consensus 713 ~~~~A~~~~~~m-~~~p~---~---------------~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----- 768 (934)
.|++|.+-+++. ...-+ . ..|-.+++.-+.. .+.+......+.++...|+-...
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~a--s~~eikkayrk~AL~~Hpd~~agsq~ea 413 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNA--SDDEIKKAYRKLALVHHPDKNAGSQKEA 413 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhc--ccchhhhHHHHHHHHhCCCcCcchhHHH
Confidence 677777666654 11111 1 1233333333333 44444444555566666653322
Q ss_pred ---HHHHHHHHHcCCChHHHHH
Q 046194 769 ---YVLLANMYASGGKWEDVAK 787 (934)
Q Consensus 769 ---y~~l~~~~~~~g~~~~a~~ 787 (934)
+...+..|...++..++.+
T Consensus 414 E~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 414 EAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHHHHHHHHHHhcCHHHHhh
Confidence 3455556666665555544
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=93.62 E-value=0.7 Score=50.02 Aligned_cols=115 Identities=10% Similarity=-0.005 Sum_probs=87.2
Q ss_pred cHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhh---------cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcc
Q 046194 677 LVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGR---------AGELDKIEEFINKM-PITP-NSLIWRTVLGACCRAN 744 (934)
Q Consensus 677 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 744 (934)
..+.|..+|.+......+.|+ ...|..+..++.. .....+|.++.++. .+.| |+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~- 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS- 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh-
Confidence 456788889888854467787 5566655554432 22445667777666 4444 566666666666677
Q ss_pred CCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 745 CRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 745 ~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
++.+.|...++++..++|+.+..|...+++..-.|+.++|.+..++..
T Consensus 352 -~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 352 -GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred -cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999998877643
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.45 E-value=0.11 Score=42.04 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEME-------PQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+++.+...+... |++++|...+++++++. |.-...+..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYREL--GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444 55555555555444331 1124567888889999999999988877654
No 234
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.40 E-value=0.64 Score=40.40 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=61.1
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC----CchHHHHHHHHHcCC
Q 046194 707 LLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN----AVNYVLLANMYASGG 780 (934)
Q Consensus 707 ~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~y~~l~~~~~~~g 780 (934)
+++..|+++.|++.|.+. .+-| .+..||.-..+++.. |+.+.|..-.++++++.-+. -..|+.-+.+|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq--~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQ--GDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHc--CChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 556667777777777665 3333 456777777777777 77888877777777775332 234778888888888
Q ss_pred ChHHHHHHHHHHHhCC
Q 046194 781 KWEDVAKARKAMKEAE 796 (934)
Q Consensus 781 ~~~~a~~~~~~m~~~~ 796 (934)
+-++|..-|+...+-|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888887777665543
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.39 E-value=0.39 Score=44.50 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=40.6
Q ss_pred cHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHH----hhCCCCCcc
Q 046194 631 NSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQ----VYGLIPQLE 699 (934)
Q Consensus 631 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 699 (934)
..++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+.+ ++|+.|+..
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 345556666777777777777777742 33466677777777777777777777776543 356666644
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.34 E-value=2.2 Score=39.06 Aligned_cols=125 Identities=20% Similarity=0.294 Sum_probs=69.5
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChH
Q 046194 565 ATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGD 644 (934)
Q Consensus 565 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 644 (934)
..++..+.+.+.......+++.+.+.+ ..+....|.++..|++.. .+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--------------------------------~~ 57 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--------------------------------PQ 57 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--------------------------------HH
Confidence 344555555555566666666555544 234555555555555432 22
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhc-CChHHHHHHHHh
Q 046194 645 KALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRA-GELDKIEEFINK 723 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~-g~~~~A~~~~~~ 723 (934)
+.++.++. .++......++..|.+.+.++++.-++..+.. |...++.+... ++.+.|.+++.+
T Consensus 58 ~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 58 KEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 33333332 23344455567777777777777777766533 23334444444 777778777776
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 046194 724 MPITPNSLIWRTVLGACC 741 (934)
Q Consensus 724 m~~~p~~~~~~~ll~~~~ 741 (934)
- .+...|..++..|.
T Consensus 122 ~---~~~~lw~~~~~~~l 136 (140)
T smart00299 122 Q---NNPELWAEVLKALL 136 (140)
T ss_pred C---CCHHHHHHHHHHHH
Confidence 3 25557777776664
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.71 E-value=13 Score=38.62 Aligned_cols=61 Identities=8% Similarity=-0.008 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC-C--CcccccHHHHHHHH--cCChHHHHHHHHHHHHCCCCCC
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPV-R--NVYSWNSMISGYAR--HGHGDKALTLFSQMKLDGPLPD 661 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~ 661 (934)
.-++.+.+.++.+.+.+++.+|.. . ....+..++..+.. ......|...+.++....+.|.
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 334444556666666666666542 1 12234444443311 1223445555555544434444
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.66 E-value=0.42 Score=51.58 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc----cHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE----QFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 662 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
...++.+..+|.+.|++++|+..|+...+ +.|+.. .|..+..+|...|++++|++.+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566666666777777777777766654 445522 3666666666666666666666654
No 239
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.59 E-value=21 Score=40.09 Aligned_cols=183 Identities=12% Similarity=0.053 Sum_probs=122.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCCC---CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPVR---NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA 671 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 671 (934)
+..+|...++.-.+.|+.+.+.-+|+....| =...|--.+.-....|+.+-|-.++....+-..+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 5677777788888888888888888877643 1224544454445558888888777776654322222222222223
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHH---HHHHhC-CCCCCHHHHH-------HHHHH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIE---EFINKM-PITPNSLIWR-------TVLGA 739 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~---~~~~~m-~~~p~~~~~~-------~ll~~ 739 (934)
+...|+.+.|..+++.+.++ . |+ +..-.-=+....|.|+.+.+. +++... +..-+..+.. -+...
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 67788999999999999986 3 66 333334466778889999888 555544 2222222222 22222
Q ss_pred HHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 046194 740 CCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWED 784 (934)
Q Consensus 740 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 784 (934)
+ . ++.+.|..+...+.+..|++-..|..+.++....+-..+
T Consensus 453 i--~--~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 453 I--R--EDADLARIILLEANDILPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred H--h--cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchh
Confidence 2 2 789999999999999999999999999998887774444
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=3 Score=42.72 Aligned_cols=47 Identities=9% Similarity=-0.028 Sum_probs=21.5
Q ss_pred cCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 609 CGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
.|...+|-..++++.+ .|..+|+--=.+|...|+.+.-...+++..-
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip 165 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP 165 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc
Confidence 3444444444444332 2444444444455555555555555555443
No 241
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.34 E-value=28 Score=40.93 Aligned_cols=43 Identities=23% Similarity=0.136 Sum_probs=25.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcc
Q 046194 327 TMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASL 370 (934)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 370 (934)
.+|-.+.+.|++++|.++..+... ........|...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 455666777777777777744443 3455556666677766554
No 242
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.34 E-value=6.3 Score=41.60 Aligned_cols=52 Identities=8% Similarity=0.054 Sum_probs=32.1
Q ss_pred HHHhCCccHHHHHHHHHHHHHcCCC---CCcccHHHHHHHHhccCCchHHHHHHHH
Q 046194 432 AFADSEALVSEAVKYYLDMRRAGWS---PNGVTFINILAAASSFSMGKLGHQVHAQ 484 (934)
Q Consensus 432 ~~~~~g~~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 484 (934)
-+++.|+. ...+.+|+..++.|-. .=+..|..|-+++.-+++++.|.+.|..
T Consensus 26 RLck~gdc-raGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 26 RLCKMGDC-RAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHhccch-hhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 46777887 8888888877776532 1122344455556666667777766543
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.29 E-value=7.6 Score=42.48 Aligned_cols=55 Identities=9% Similarity=-0.000 Sum_probs=26.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-C-hhhHHHHHHHHHhhCcHHHHHHHHHHh
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLP-D-HVTFVGVLSACSHAGLVDEGFKHFKSM 688 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 688 (934)
+..+..+.|+.++|++.|++|.+.. ++ | ......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4444445555556666655555432 11 1 123344555555555555555555444
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.19 E-value=1.9 Score=47.91 Aligned_cols=131 Identities=16% Similarity=0.212 Sum_probs=85.9
Q ss_pred HHHcCChHHHHHHHH--HHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCCh
Q 046194 637 YARHGHGDKALTLFS--QMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGEL 714 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~--~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~ 714 (934)
....|+++++.+..+ ++.. .+ | ..-...+++-+.+.|..+.|+++-..-..+ .++-.+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 345677777766654 1111 12 2 333667777788899999998875444332 4667789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 715 DKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 715 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+.|.+..++. ++...|..|....... |+++.|+.++++.. -+..|.-+|...|+-+.-.++-+....
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~--g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQ--GNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHT--TBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHc--CCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999887765 3777999999999988 99999999998873 456788888888888777777665554
Q ss_pred CC
Q 046194 795 AE 796 (934)
Q Consensus 795 ~~ 796 (934)
+|
T Consensus 402 ~~ 403 (443)
T PF04053_consen 402 RG 403 (443)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=3.1 Score=42.23 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=83.3
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH---HHHHHhccCCC
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTV---LGACCRANCRK 747 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~l---l~~~~~~~~~~ 747 (934)
.....|+..+|...|...... ..-+...--.|..+|...|+.++|..++..+|.+-...-|..| +....+. .+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa--a~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA--AA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH--hc
Confidence 456778888888888888763 2233566777888999999999999999998655444444331 1222222 22
Q ss_pred cHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 748 TELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
... ....+.-..-+|+|...-..|+..|...|+.++|.+.+-.+.+
T Consensus 219 ~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 219 TPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211 1244556677899999999999999999999999887666554
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.11 E-value=5 Score=40.01 Aligned_cols=166 Identities=15% Similarity=0.135 Sum_probs=87.4
Q ss_pred HhcCCHHHHHHHHHhhccC-C-C---cchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhc---h-
Q 046194 505 GKCGEMDDCEKIFARMSER-R-D---EVSWNSMISGYIHNELLPKAMNLVWFMMQRG-QRLDHFTFATVLSACAS---V- 574 (934)
Q Consensus 505 ~~~g~~~~A~~~~~~~~~~-p-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~---~- 574 (934)
.+.|++++|.+.|+.+..+ | + ..+--.++-++-+.+++++|+..+++....- -.|| .-|..-|.+.+. .
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 4678999999999998876 3 2 2234445667788999999999998877643 2333 333333443331 1
Q ss_pred ---hhHH---HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCccc-c-cHHHHHHHHcCChHHH
Q 046194 575 ---ATLE---RGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYS-W-NSMISGYARHGHGDKA 646 (934)
Q Consensus 575 ---~~~~---~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-~-~~li~~~~~~g~~~~A 646 (934)
.+.. .|..-++.++.. ++.+..+ .+|......+. |... + -.+..-|.+.|.+..|
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya--------------~dA~~~i~~~~--d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR-YPNSRYA--------------PDAKARIVKLN--DALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH-CCCCcch--------------hhHHHHHHHHH--HHHHHHHHHHHHHHHHhcChHHH
Confidence 1112 222222222221 1111111 11111110000 0000 0 1244567778888888
Q ss_pred HHHHHHHHHCCCCCC-hh---hHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 647 LTLFSQMKLDGPLPD-HV---TFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 647 ~~l~~~m~~~g~~p~-~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
..-+++|++. -|+ .. .+..+..+|...|..++|.+.-.-+..
T Consensus 187 ~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 187 INRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8888888775 333 22 244455677777777777776544433
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.75 E-value=0.66 Score=46.03 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=90.0
Q ss_pred CChHHHHHHhhccC--CCCcccHHHHHHHHHcC-----CCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccc
Q 046194 138 ESTDCARRIFEEIE--TRDLISWNSIISVYSQR-----GDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLS 210 (934)
Q Consensus 138 g~~~~a~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~ 210 (934)
..+-..++.|...+ ++|-.+|-+++..+... +..+=.-..++.|++.|| .-|..+|+.||+.+=+..-.
T Consensus 48 K~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGV----erDl~vYk~LlnvfPKgkfi 123 (406)
T KOG3941|consen 48 KSLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGV----ERDLDVYKGLLNVFPKGKFI 123 (406)
T ss_pred ccccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcc----hhhHHHHHHHHHhCcccccc
Confidence 34556677888887 78888899888888663 566667777889999999 99999999999887544322
Q ss_pred cch--------------HHHHHHHHHHHhCCCCCccchhHHHHHHHhcCCh-HHHHHHHHHhhh
Q 046194 211 GSY--------------LLQQILAMVKKAGLLSDLYVGSALVSGFARLGNF-YYARKIFEQMIQ 259 (934)
Q Consensus 211 ~~~--------------~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 259 (934)
..- =+..+++.|...|+-||..+-..|+.+|.+.|.. .+..++.-.|++
T Consensus 124 P~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 124 PQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred cHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 111 1778999999999999999999999999988864 344445445543
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=1.3 Score=46.82 Aligned_cols=95 Identities=16% Similarity=0.076 Sum_probs=73.1
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PIT-PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
..+..+.-+|.+.+++.+|++..++. ... +|....--=..+|... |+++.|+..++++++++|.|-.+-.-|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~--~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLAL--GEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34566777888888888888887776 333 4555665566677777 9999999999999999999988888888887
Q ss_pred HcCCChHHH-HHHHHHHHhC
Q 046194 777 ASGGKWEDV-AKARKAMKEA 795 (934)
Q Consensus 777 ~~~g~~~~a-~~~~~~m~~~ 795 (934)
.+..+..+. .+++..|-.+
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 777766665 6777777643
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.66 E-value=1.9 Score=38.89 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=32.0
Q ss_pred hcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 710 RAGELDKIEEFINKM----PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
+.|++++|.+.|+.+ |..| ....--.|+.++... ++++.|...+++.++++|.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~--~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ--GDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCCC
Confidence 445555555555544 2222 123344566666666 7777777777777777776654
No 250
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.39 E-value=1.7 Score=43.36 Aligned_cols=98 Identities=10% Similarity=0.041 Sum_probs=71.2
Q ss_pred HHHHHhcCC--CCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC-----------
Q 046194 310 SRSVFRFMI--GKDSVSWNTMISGLDQN-----GCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLG----------- 371 (934)
Q Consensus 310 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----------- 371 (934)
-++.|...+ ++|-.+|-+++..+... +..+=....++.|.+.|+.-|..+|..+|..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666665 57888888888887653 556666677888999999999999999998776532
Q ss_pred -----chHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCC
Q 046194 372 -----WIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGY 407 (934)
Q Consensus 372 -----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 407 (934)
+-+-+..++++|..+|+.||..+-..|++++.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223456677777777777777777777777766554
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.39 E-value=1.2 Score=44.71 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC----CCCCC-HHHHHHHH
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM----PITPN-SLIWRTVL 737 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll 737 (934)
.|+.-+. +...|++.+|..-|....+.|.-.+- ...+--|...+...|++++|...|..+ |..|- +..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3554443 34556677887777777775311110 333444555566666666655555444 22221 12222233
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
...... |+.+.|...++.+.+--|..
T Consensus 223 ~~~~~l--~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRL--GNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHh--cCHHHHHHHHHHHHHHCCCC
Confidence 333333 44445555555444444443
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.19 E-value=1.6 Score=43.88 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=72.2
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-h---hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPD-H---VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCM 704 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 704 (934)
|+.-+. +.+.|++..|...|...++.. |+ . ..+--|..++...|++++|..+|..+.+.|+-.|. ++.+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 554444 345677899999999888853 33 1 22445788899999999999999999998777777 5888889
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 046194 705 VDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m 724 (934)
...+.+.|+.++|...+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999888877
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.02 E-value=1.6 Score=44.52 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=119.4
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHH----HHHHhhcCCh
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCM----VDLLGRAGEL 714 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l----i~~l~~~g~~ 714 (934)
-.|...+|-..++++.+. .+.|...+...=.+|...|..+.-...++++.. ...|+...|+.+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 578888999999999886 456677777778899999999999999998876 356777666554 3445689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC----CCchHHHHHHHHHcCCChHHHHHH
Q 046194 715 DKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ----NAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
++|++.-++. .++| |...-.++....... |+..++.+..++-...-.+ -...|-+.+-.|...+.++.|.++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~--~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMN--GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhc--chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999887 5655 455667777777777 8999999888775544332 244577888888899999999999
Q ss_pred HHHHHhCCCcCCCc
Q 046194 789 RKAMKEAEVKKEAG 802 (934)
Q Consensus 789 ~~~m~~~~~~~~~~ 802 (934)
+..=.-+.+.++.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 87554444444443
No 254
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.90 E-value=15 Score=39.35 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCc-ch-----HHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046194 499 ALLSCYGKCGEMDDCEKIFARMSERRDE-VS-----WNSMISGYIH---NELLPKAMNLVWFMMQRGQRLDHFTFATVLS 569 (934)
Q Consensus 499 ~li~~~~~~g~~~~A~~~~~~~~~~p~~-~~-----~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 569 (934)
.|+-.|-...+++...++.+.+..-|+. .. --...-++.+ .|+.++|++++..+....-.++..||..+-+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777788888888877765422 11 1122334455 7788888888888666666677777776665
Q ss_pred HH
Q 046194 570 AC 571 (934)
Q Consensus 570 a~ 571 (934)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.86 E-value=2.4 Score=47.11 Aligned_cols=130 Identities=13% Similarity=0.091 Sum_probs=86.3
Q ss_pred hhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHH
Q 046194 234 GSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSV 313 (934)
Q Consensus 234 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 313 (934)
.+.++..+-+.|..+.|+++.+.-.. -.+...++|+++.|.++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~-------------------------------------rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH-------------------------------------RFELALQLGNLDIALEI 340 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH-------------------------------------HHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH-------------------------------------HhHHHHhcCCHHHHHHH
Confidence 56777777888888888887655322 12567789999999999
Q ss_pred HhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchh
Q 046194 314 FRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVS 393 (934)
Q Consensus 314 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 393 (934)
.++.. +...|..|.....++|+++-|.+.|.+... |..++--+...|+.+.-+.+.......|-
T Consensus 341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----- 404 (443)
T PF04053_consen 341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD----- 404 (443)
T ss_dssp CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----
Confidence 88766 566999999999999999999999998764 55555556666776666666665555442
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhh
Q 046194 394 VSNALLSLYADAGYLSRCLKVFFL 417 (934)
Q Consensus 394 ~~~~li~~y~~~g~~~~A~~~f~~ 417 (934)
+|.....+.-.|+.++..+++.+
T Consensus 405 -~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333344445666555555443
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.70 E-value=40 Score=39.52 Aligned_cols=74 Identities=9% Similarity=0.172 Sum_probs=39.4
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHH-hcCCCCCchHHHHHHHHHcCCC
Q 046194 705 VDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLF-EMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
+..+.+..+.+++..+.+..+-. ++..|-.+|..+... +.++...+...+++ .++.++.-+-..+.+++++.+.
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~--~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSE--ESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhh--cchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 34445555666666666665433 566677777766666 55554444333322 2333343444455566665553
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.41 E-value=10 Score=34.58 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhc
Q 046194 372 WIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADA 405 (934)
Q Consensus 372 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 405 (934)
........++.+++.+ ..+....|.++..|++.
T Consensus 22 ~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 22 LLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred cHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3334444444444433 24455666677777654
No 258
>PRK09687 putative lyase; Provisional
Probab=90.36 E-value=25 Score=36.59 Aligned_cols=234 Identities=6% Similarity=-0.020 Sum_probs=109.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046194 493 ETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELL----PKAMNLVWFMMQRGQRLDHFTFATVL 568 (934)
Q Consensus 493 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll 568 (934)
+..+....+..+.+.|..+.. ..+..+...+|...=...+.++.+.|+. ++++..+..+... .|+...-...+
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~-~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVF-RLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHH-HHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 333444444444444432222 2222222222444444444555555542 3455555555332 34444444444
Q ss_pred HHHhchhhHH--HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcC-ChHH
Q 046194 569 SACASVATLE--RGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHG-HGDK 645 (934)
Q Consensus 569 ~a~~~~~~~~--~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 645 (934)
.++...+.-. ............-..++..+-...+.++++.|+.+....+...+..+|...-...+.++.+.+ +...
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 4444432111 011122222222223355555566666666666433333333444455544444445555442 2345
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 646 ALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 646 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
+...+..+.. .+|...-...+.++.+.|+ ..+...+-...+. ++ .....+.+++..|.- +|...+..+
T Consensus 193 ~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 193 IREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 6666666654 4455556666667766666 3455544444432 22 234556666666663 566666555
Q ss_pred CCCCCHHHHHHHHHHH
Q 046194 725 PITPNSLIWRTVLGAC 740 (934)
Q Consensus 725 ~~~p~~~~~~~ll~~~ 740 (934)
.-.||..+-..-+.+|
T Consensus 262 ~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 262 YKFDDNEIITKAIDKL 277 (280)
T ss_pred hhCCChhHHHHHHHHH
Confidence 3345555544444444
No 259
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.25 E-value=53 Score=40.22 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHH
Q 046194 600 SALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVD 679 (934)
Q Consensus 600 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 679 (934)
.-.++.--+.|.+.+|..++..-.+.--..|.+-..-+...+.+++|.-.|+..-+ ..-.+.+|..+|+|.
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWR 982 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHH
Confidence 33444445666777777666443332233444444445556777777777765422 223566788899999
Q ss_pred HHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCC
Q 046194 680 EGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPN 729 (934)
Q Consensus 680 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~ 729 (934)
+|+.+..++.. +-.--..+-..|+.-+...++.-||-++..+....|.
T Consensus 983 ~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~ 1030 (1265)
T KOG1920|consen 983 EALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE 1030 (1265)
T ss_pred HHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH
Confidence 99988777643 1111123335678888889999999888888755553
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.02 E-value=0.5 Score=30.64 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 731 LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 731 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
.+|..+...+... |+.++|...++++++++|+
T Consensus 2 ~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQL--GDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHHHHCcC
Confidence 3566667777777 7777777777777777775
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.97 E-value=5.5 Score=44.96 Aligned_cols=49 Identities=10% Similarity=-0.039 Sum_probs=26.7
Q ss_pred CCcHHHHHHHHHHHhcCCCCCch-HHHHHHHHHcCCCh-------HHHHHHHHHHHh
Q 046194 746 RKTELGRKAANMLFEMEPQNAVN-YVLLANMYASGGKW-------EDVAKARKAMKE 794 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~-y~~l~~~~~~~g~~-------~~a~~~~~~m~~ 794 (934)
.++++|...+..+.+.+.-.... +...+-+|...|+. ++|.++++++..
T Consensus 319 ~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 319 HDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred chHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 55666666666655554433332 23444555556666 666666665543
No 262
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.93 E-value=0.69 Score=29.84 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
.|..+...+... |+++.|+..++++++++|+|
T Consensus 3 ~~~~lg~~~~~~--~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQL--GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHh--CCHHHHHHHHHHHHHHCcCC
Confidence 455566666666 77777777777777777764
No 263
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.91 E-value=32 Score=37.15 Aligned_cols=133 Identities=17% Similarity=0.055 Sum_probs=88.7
Q ss_pred CCchhhHHHHHHhhhCCCChHHHHHHhhccCCCCcc---cHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeH
Q 046194 121 FDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLI---SWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTF 197 (934)
Q Consensus 121 ~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~ 197 (934)
-|+..|-.||.-|... |..+..+++++.|..|-.. .|..-|++=....+++....+|.+-... ..+...|
T Consensus 40 tnI~S~fqLiq~~~tq-~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k------~l~ldLW 112 (660)
T COG5107 40 TNILSYFQLIQYLETQ-ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK------SLNLDLW 112 (660)
T ss_pred hhHHHHHHHHHHHhhh-hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh------hccHhHH
Confidence 4678899999999988 9999999999999987443 5999999988899999999999887765 3455666
Q ss_pred HHHHHHHhcCccccchH----HHHHHHHHHH-hCCCCCcc-chhHHHHHHH---h------cCChHHHHHHHHHhhhc
Q 046194 198 GSLITAAYSSVLSGSYL----LQQILAMVKK-AGLLSDLY-VGSALVSGFA---R------LGNFYYARKIFEQMIQK 260 (934)
Q Consensus 198 ~~ll~a~~~~~~~~~~~----a~~i~~~~~~-~g~~~~~~-~~~~li~~~~---~------~g~~~~A~~l~~~m~~~ 260 (934)
..-|.--.+......+. ..+.++.... .++.|-.. .|+..+..+- . ..+.+..+..+.+|...
T Consensus 113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 66665554444222211 3345555554 45555444 3444433322 2 33455566667777543
No 264
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.75 E-value=9.2 Score=35.33 Aligned_cols=90 Identities=18% Similarity=0.125 Sum_probs=62.3
Q ss_pred HHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCC
Q 046194 670 SACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRK 747 (934)
Q Consensus 670 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~ 747 (934)
+.-...++.+++..++..+.- +.|. .++-..-+..+.+.|+|.+|..++++. .-.|....-.+|+..|... ..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~--~~ 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA--LG 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH--cC
Confidence 334566788888888888854 6677 333344456678889999999999988 3445555567777777777 55
Q ss_pred cHHHHHHHHHHHhcCCC
Q 046194 748 TELGRKAANMLFEMEPQ 764 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~ 764 (934)
-..-...++.+++..|+
T Consensus 93 D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 93 DPSWRRYADEVLESGAD 109 (160)
T ss_pred ChHHHHHHHHHHhcCCC
Confidence 55666677777777653
No 265
>PRK15331 chaperone protein SicA; Provisional
Probab=89.58 E-value=5 Score=37.18 Aligned_cols=83 Identities=10% Similarity=0.048 Sum_probs=33.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHH
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~ 718 (934)
+.|++++|..+|+-+...+ .-|..-+..|..+|-..+.+++|+..|.....- . .-|+..+-.+..+|...|+.+.|+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHHH
Confidence 3444444444444444321 111122233333334444555555554444321 1 112222333444555555555555
Q ss_pred HHHHhC
Q 046194 719 EFINKM 724 (934)
Q Consensus 719 ~~~~~m 724 (934)
+-|+..
T Consensus 126 ~~f~~a 131 (165)
T PRK15331 126 QCFELV 131 (165)
T ss_pred HHHHHH
Confidence 544443
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.48 E-value=5.2 Score=36.13 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLP--DHVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
.+.|++++|++.|+.+...-..+ ....-..++.++.+.|++++|...+++..+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555555555555555531110 122234455555555555555555555555
No 267
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.83 E-value=18 Score=35.70 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=44.8
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhccCCCcHHHHHHHHHHHhc----CCCCCc
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKMP-------ITPNS-LIWRTVLGACCRANCRKTELGRKAANMLFEM----EPQNAV 767 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~ 767 (934)
.|......|.|..+++||-..|.+-+ .-|+. ..+-+++-.+... .|+..|++.++.-.++ .|++..
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~--~Dyv~aekc~r~~~qip~f~~sed~r 229 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYA--HDYVQAEKCYRDCSQIPAFLKSEDSR 229 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhH--HHHHHHHHHhcchhcCccccChHHHH
Confidence 34445556677777777766555431 12222 1122222223333 5677777777765544 245555
Q ss_pred hHHHHHHHHHcCCChHHHHHH
Q 046194 768 NYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 768 ~y~~l~~~~~~~g~~~~a~~~ 788 (934)
....|...| ..|+.+++.++
T Consensus 230 ~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 230 SLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHh-ccCCHHHHHHH
Confidence 555555444 45666666555
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.82 E-value=3.6 Score=42.65 Aligned_cols=48 Identities=6% Similarity=0.052 Sum_probs=27.7
Q ss_pred HHhcCChhHHHHHHHHHHHcC--CCCCHhHHHHHHHHHhchhhHHHHHHH
Q 046194 536 YIHNELLPKAMNLVWFMMQRG--QRLDHFTFATVLSACASVATLERGMEV 583 (934)
Q Consensus 536 ~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~i 583 (934)
+.+..+.++|+..+.+-...- ..---.+|..+..+.++.|..++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 345667778887777655431 111225566666666666666665544
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.72 E-value=39 Score=36.56 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=76.4
Q ss_pred CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--cc
Q 046194 625 RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLP---DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ--LE 699 (934)
Q Consensus 625 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 699 (934)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|+..++...+. .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344578888888888899998888888887743222 2222333344556678888888888777662 11111 11
Q ss_pred cHHHHHHHHhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc----cCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEF-INKMPITPNSLIWRTVLGACCRA----NCRKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
....+...+.. ..+..... ........-..++..+..-+... ..++.+.+...++.+.++.|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 00000000 00000000001111111111111 1277788889999999999988777777766
Q ss_pred HHHc
Q 046194 775 MYAS 778 (934)
Q Consensus 775 ~~~~ 778 (934)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 5443
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.45 E-value=2.5 Score=47.70 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=81.1
Q ss_pred HHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc-----ccHHHHHHHH-h---hcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 046194 667 GVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL-----EQFSCMVDLL-G---RAGELDKIEEFINKM-PITPNSLIWRTV 736 (934)
Q Consensus 667 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~li~~l-~---~~g~~~~A~~~~~~m-~~~p~~~~~~~l 736 (934)
.+++...-.|+-+.|++.+....+..++.-.. -.|..++..+ . .....+.|.++++.+ ..-|+...|.-.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34444445566666666665554422222211 1222222222 2 345778888888887 556888887766
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCC----CCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 737 LGACCRANCRKTELGRKAANMLFEMEPQ----NAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 737 l~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
-+-+.... |+++.|...++.+.+...+ ..-.+.-+++.+...++|++|.+.+..+.+.
T Consensus 273 ~gR~~~~~-g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 273 EGRLERLK-GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHh-cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 66555443 8888888888876643322 2345778999999999999999999998763
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.13 E-value=1.1 Score=31.20 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 766 AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 766 ~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|..+..++.+|...|++++|.++++...+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45688999999999999999999998875
No 272
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.13 E-value=31 Score=34.64 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=38.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCC-C-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc
Q 046194 636 GYARHGHGDKALTLFSQMKLDGPL-P-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL 698 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 698 (934)
.-.+.|++++|...|+.+..+..- | ...+...++-++-+.+++++|+..+++....|+-.|+.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 334567777777777777754211 1 13345555556667777777777777777766555553
No 273
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.05 E-value=59 Score=37.87 Aligned_cols=103 Identities=11% Similarity=0.110 Sum_probs=71.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCC---chhHHHHHHHHhhccCChhHHHHH
Q 046194 237 LVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFD---MVAVGNGLVNMYAKCGTIDDSRSV 313 (934)
Q Consensus 237 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~ 313 (934)
=|+-+.+.+.+++|+.+.+..... .+ -..++...|+.|.-.|++++|-.+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~---------------------------~~~~~i~kv~~~yI~HLl~~~~y~~Aas~ 414 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN---------------------------EERFVIKKVGKTYIDHLLFEGKYDEAASL 414 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC---------------------------ccccchHHHHHHHHHHHHhcchHHHHHhh
Confidence 356677788888888877665432 22 234667888889999999999999
Q ss_pred HhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 046194 314 FRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCAS 369 (934)
Q Consensus 314 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 369 (934)
.-.|...+..-|.--+.-+...++......+ +....-+.+...|..+|..+..
T Consensus 415 ~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 415 CPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 9999888888998888888888776654333 2222223445566666666554
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.01 E-value=10 Score=39.69 Aligned_cols=64 Identities=11% Similarity=0.193 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHh-hC--cHHHHHHHHHHhHHhhCCCCCcccHHHHHHH
Q 046194 643 GDKALTLFSQMKLDGPLPDH-VTFVGVLSACSH-AG--LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDL 707 (934)
Q Consensus 643 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~-~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 707 (934)
.+++...|+.+.+.|+..+. ..+.+-+-++.. .. .+..+.++++.+.+. ++++...+|..++-+
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 35677888888888877663 334443334332 22 255788888888885 999998888877543
No 275
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.95 E-value=13 Score=35.97 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 766 AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 766 ~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+|.-|+..|...|..++|..+++....
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 45799999999999999999999987764
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.92 E-value=7.3 Score=42.60 Aligned_cols=150 Identities=14% Similarity=0.040 Sum_probs=84.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKI 717 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 717 (934)
-+..++++-+++-++..+ +.||..+-..++ +-..+.-+.++.++|++..+. +- ..|..- ......|. .
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s-~~~~~~g~---~ 246 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKS-QFLQHHGH---F 246 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchh-hhhhcccc---h
Confidence 445566677777777777 678765544333 334455678888888887653 10 000000 00001111 1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC--CCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 718 EEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ--NAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 718 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.+.+..-..+|-..+=..|...+++. |+.++|.+.++.+++..|. +-..+..|...|...+++.|+..++.+-.+-
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarkl--Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKL--GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHh--CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111111223333445566666666 8888888888888777664 3456778888888888888888877665443
Q ss_pred CCcCCC
Q 046194 796 EVKKEA 801 (934)
Q Consensus 796 ~~~~~~ 801 (934)
...+..
T Consensus 325 ~lpkSA 330 (539)
T PF04184_consen 325 SLPKSA 330 (539)
T ss_pred cCCchH
Confidence 333433
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.44 E-value=3.8 Score=41.85 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHhHHHHH
Q 046194 495 TIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQ-----RGQRLDHFTFATV 567 (934)
Q Consensus 495 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 567 (934)
.++..++..+..+|+.+.+.+.++++... | |...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35578899999999999999999998875 4 888999999999999999999999998866 4677766555443
Q ss_pred HH
Q 046194 568 LS 569 (934)
Q Consensus 568 l~ 569 (934)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 278
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.39 E-value=8.8 Score=40.15 Aligned_cols=129 Identities=10% Similarity=0.160 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhc--cCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 046194 441 SEAVKYYLDMRRAGWSPNGVTFINILAAASS--FSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFA 518 (934)
Q Consensus 441 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 518 (934)
++.+.+++.|.+.|++-+..+|.+.+-.... ..+. ......|..+|+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~-------------------------------~~~~~ra~~iy~ 127 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDY-------------------------------DEIIQRAKEIYK 127 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccH-------------------------------HHHHHHHHHHHH
Confidence 6777888888888888887777543322211 0000 012345666777
Q ss_pred hhccC------CCcchHHHHHHHHHhcCC----hhHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhchhh--HHHHHHHH
Q 046194 519 RMSER------RDEVSWNSMISGYIHNEL----LPKAMNLVWFMMQRGQRLDH--FTFATVLSACASVAT--LERGMEVH 584 (934)
Q Consensus 519 ~~~~~------p~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~--~~~a~~i~ 584 (934)
.|++. ++-..+.+|+.. ..++ .+++...|+.+...|...+. ...+.+|..+..... ..++..++
T Consensus 128 ~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~ 205 (297)
T PF13170_consen 128 EMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELY 205 (297)
T ss_pred HHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 77664 344455555544 2222 24556677777776765532 444444444433222 44667777
Q ss_pred HHHHHhCCCCcHhHHHHH
Q 046194 585 ACGVRACLEFDVVIGSAL 602 (934)
Q Consensus 585 ~~~~~~~~~~~~~~~~~l 602 (934)
+.+.+.|+++....|..+
T Consensus 206 ~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 206 NALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHcCCccccccccHH
Confidence 777777777665555544
No 279
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.14 E-value=71 Score=37.74 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=29.0
Q ss_pred CCcHHHHHHHHHHHhcC---CCCCc-hH-----HHHHHHHHcCCChHHHHHHHHHHH
Q 046194 746 RKTELGRKAANMLFEME---PQNAV-NY-----VLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~---p~~~~-~y-----~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
|++.+..........+- |+... .| ..+.+.|...|+.++|...+.+..
T Consensus 548 ~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 548 GDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 67766555444444433 22222 23 255567888999999988877654
No 280
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.91 E-value=44 Score=35.10 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=49.9
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--hhhH-----HHHHHHHHhhCcHHHHHHHHHHhHHh---hCCCC
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLD--GPLPD--HVTF-----VGVLSACSHAGLVDEGFKHFKSMSQV---YGLIP 696 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~-----~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p 696 (934)
.+-.|-+.|.+..++++|+-+..+..+. .+..+ ..-| ..+.-++...|...+|.+.-++..+- +|-.|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 5556666666666666666555544331 11111 1111 12233455666666666666554432 23222
Q ss_pred C-cccHHHHHHHHhhcCChHHHHHHHHh
Q 046194 697 Q-LEQFSCMVDLLGRAGELDKIEEFINK 723 (934)
Q Consensus 697 ~-~~~y~~li~~l~~~g~~~~A~~~~~~ 723 (934)
. .....++.|.|...|+.|.|+.-++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 2 33455677778777877777665554
No 281
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.80 E-value=3.2 Score=39.24 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=57.7
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 046194 707 LLGRAGELDKIEEFINKM-PITP------NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASG 779 (934)
Q Consensus 707 ~l~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~ 779 (934)
-+.+.|++++|..-+... .+-| ..+.|..-..+..+. +..+.|.....++++++|........-+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl--~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL--RKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh--hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 344556666666555543 1112 122233333344445 7788888888888888888877778888888888
Q ss_pred CChHHHHHHHHHHHhC
Q 046194 780 GKWEDVAKARKAMKEA 795 (934)
Q Consensus 780 g~~~~a~~~~~~m~~~ 795 (934)
.++++|.+=++++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8888888888888753
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.51 E-value=1.2 Score=29.40 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=21.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 768 NYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 768 ~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+|..|+++|.+.|+|++|.++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999988744
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.41 E-value=45 Score=34.74 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCC--CcchHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCH
Q 046194 499 ALLSCYGKCGEMDDCEKIFARMSERR--DEVSWNSMISGYIH--NELLPKAMNLVWFMMQRGQRLDH 561 (934)
Q Consensus 499 ~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~ 561 (934)
.-++.+.+.++.+.+.+++.+|.... ....+...+..+-+ ......|...+.++....+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 33444444566666666666665542 22344444444311 22334555555555544444443
No 284
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.25 E-value=21 Score=40.83 Aligned_cols=101 Identities=22% Similarity=0.367 Sum_probs=62.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCC
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPDHVT---FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGE 713 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~ 713 (934)
|-..+..+.|++.|++..+ +.|+..+ +..|+.+-.+ .++...++ +.+ |+ .|-.+++|.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~El-q~I----gm--------kLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLEL-QQI----GM--------KLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHH-HHH----HH--------HHHHHhhccch
Confidence 3445556788888998887 6787543 5555544322 12222221 111 11 24456788998
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 714 LDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 714 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
++.-.++++-. ..+.+-... +|+..+.+++++++++.|+.-
T Consensus 360 leklq~YWdV~----------~y~~asVLA--nd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 360 LEKLQEYWDVA----------TYFEASVLA--NDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHHHHhHH----------Hhhhhhhhc--cCHHHHHHHHHHHhccCCcee
Confidence 88877766432 234444455 889999999999999998753
No 285
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.93 E-value=4.1 Score=41.83 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=14.9
Q ss_pred CCcHHHHHHHHHHHhcCCCCC
Q 046194 746 RKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~ 766 (934)
|+.++|..-++.+++++|++.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 666777777777777777753
No 286
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.77 E-value=68 Score=36.26 Aligned_cols=123 Identities=9% Similarity=-0.075 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhccC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046194 493 ETTIENALLSCYGKCGEMDDCEKIFARMSER--RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSA 570 (934)
Q Consensus 493 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 570 (934)
+...|..-++.-.+.|+.+.+.-+|++..-. .=...|--.+.-....|+.+-|-.++..-.+--++-.+.+-..--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3445666666667777777777777766542 01122333333333346666666555444332222222221111122
Q ss_pred HhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 046194 571 CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 616 (934)
+-..|+...|..+++.+...- +.-+.+-.--+.+..+.|..+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 344567777777777766543 222233333455556666666665
No 287
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=85.54 E-value=4.6 Score=35.34 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=47.1
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhc
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM----PITPN--SLIWRTVLGACCRA 743 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~ 743 (934)
+.+..|+.+.|++.|.+... +-|. ...||.-..+|.-.|+.++|++-+++. +-+.. -..|.--...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34566666666666666654 3333 566666666666666666666666554 11100 01122222234444
Q ss_pred cCCCcHHHHHHHHHHHhcCC
Q 046194 744 NCRKTELGRKAANMLFEMEP 763 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p 763 (934)
|+.+.|..-++.+-++..
T Consensus 129 --g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 --GNDDAARADFEAAAQLGS 146 (175)
T ss_pred --CchHHHHHhHHHHHHhCC
Confidence 677777666665555543
No 288
>PRK09687 putative lyase; Provisional
Probab=85.53 E-value=49 Score=34.40 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=62.1
Q ss_pred CchhhHHHHHHhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCc----hHHHHHHHHHHHccCCCCCCCCceeH
Q 046194 122 DGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDT----ISVFKLFSRMQREGFRYSLKPNEYTF 197 (934)
Q Consensus 122 ~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~~~~~p~~~t~ 197 (934)
|..+.-..+...... |+.+....+..-...+|...=...+.++.+-|+. .+++.++..+... .|+...-
T Consensus 36 d~~vR~~A~~aL~~~-~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~------D~d~~VR 108 (280)
T PRK09687 36 NSLKRISSIRVLQLR-GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE------DKSACVR 108 (280)
T ss_pred CHHHHHHHHHHHHhc-CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc------CCCHHHH
Confidence 333333334444443 4433333333323344444444555666666653 4577777766433 4565555
Q ss_pred HHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHh
Q 046194 198 GSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQM 257 (934)
Q Consensus 198 ~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 257 (934)
...+.+++..+.................-..++..+--..+.++.+.|+.+ |...+-.+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~-ai~~L~~~ 167 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA-AIPLLINL 167 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH-HHHHHHHH
Confidence 566666655542211001122333333333446666667777777777644 44444443
No 289
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.43 E-value=94 Score=36.71 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=56.5
Q ss_pred CCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCC---------CCCccchhHHH
Q 046194 168 RGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGL---------LSDLYVGSALV 238 (934)
Q Consensus 168 ~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~---------~~~~~~~~~li 238 (934)
.+++..|++.++.+....- ..-.|-...+..++.++........+.+.+.+..+..... .|-..+|..++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~-~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLAN-QRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred cccHHHHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3789999999988765320 0005666777778888776554433335566655543222 23445666666
Q ss_pred HHHH--hcCChHHHHHHHHHhhh
Q 046194 239 SGFA--RLGNFYYARKIFEQMIQ 259 (934)
Q Consensus 239 ~~~~--~~g~~~~A~~l~~~m~~ 259 (934)
..++ ..|++..+...++++.+
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 6654 57888888888777743
No 290
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.26 E-value=53 Score=33.71 Aligned_cols=116 Identities=10% Similarity=0.132 Sum_probs=62.6
Q ss_pred HhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCc-cccc---HHHHHHHHcCChHHH
Q 046194 571 CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNV-YSWN---SMISGYARHGHGDKA 646 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~---~li~~~~~~g~~~~A 646 (934)
....++...+..+++.+....-. +....-.|+..|...|+.+.|..++..++.... .-|. +-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34556666666666666554322 244455678888889999999999988873211 1111 122333333333333
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 647 LTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 647 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
..+-++.-. .|+ ...-..+...+...|+.++|.+.+-.+.+
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333322 453 33344455566677777777765544443
No 291
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.28 E-value=1e+02 Score=36.29 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=40.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHH-hCCCCcHhHHHHHHHHHHh---c
Q 046194 534 SGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVR-ACLEFDVVIGSALVDMYSK---C 609 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~~---~ 609 (934)
..+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-..-.+... ..+.. ..-.|...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445568999999998877 3345667777777666554333222211 22211 1111122456678888875 4
Q ss_pred CCHHHHHHHhccCC
Q 046194 610 GRIDYASRFFDLMP 623 (934)
Q Consensus 610 g~~~~A~~~~~~~~ 623 (934)
.+..+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 56777887776655
No 292
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=83.26 E-value=73 Score=34.57 Aligned_cols=136 Identities=10% Similarity=0.129 Sum_probs=99.0
Q ss_pred cccccHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccH-HHH
Q 046194 627 VYSWNSMISGYARHGHGDKALTLFSQMKLDG-PLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQF-SCM 704 (934)
Q Consensus 627 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~~l 704 (934)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|.++|+.-...+ ||...| .-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 4467777777777777888888999988888 5566777777776544 578888888888766532 554443 345
Q ss_pred HHHHhhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 705 VDLLGRAGELDKIEEFINKM--PITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
++-+.+-++-+.|..+|++. .+..+ -.+|..++.-=... |++..+...-++..++-|+....
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~--G~lN~v~sLe~rf~e~~pQen~~ 538 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMV--GSLNNVYSLEERFRELVPQENLI 538 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhh--cchHHHHhHHHHHHHHcCcHhHH
Confidence 66777888888888888865 23333 45788888877777 88888888888888888876433
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.67 E-value=4.5 Score=41.33 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=58.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChhhHHH
Q 046194 596 VVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKL-----DGPLPDHVTFVG 667 (934)
Q Consensus 596 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 667 (934)
..++..++..+..+|+.+.+...++++.. -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34566788888899999999888887764 3556899999999999999999999988765 477777666554
Q ss_pred HHHH
Q 046194 668 VLSA 671 (934)
Q Consensus 668 ll~a 671 (934)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 294
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.51 E-value=34 Score=32.08 Aligned_cols=138 Identities=12% Similarity=0.045 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHH
Q 046194 215 LQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVG 294 (934)
Q Consensus 215 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 294 (934)
..+.++.+.+.++.|+...|..+++.+.+.|++.....+++-=.-+|. +.+--.++..|- .++.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DS-------------k~lA~~LLs~~~-~~~~~~ 78 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDS-------------KPLACQLLSLGN-QYPPAY 78 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCc-------------HHHHHHHHHhHc-cChHHH
Confidence 345666667789999999999999999999998887777665333221 111111111111 011112
Q ss_pred HHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchH
Q 046194 295 NGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIM 374 (934)
Q Consensus 295 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 374 (934)
.-|.+.+.++. ..+..++..+...|++-+|+++.+.... .+......++.+..+.+|..
T Consensus 79 -------------Ql~lDMLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 79 -------------QLGLDMLKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQ 137 (167)
T ss_pred -------------HHHHHHHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHH
Confidence 22233333322 2456677778888888888888877532 23334466778887777777
Q ss_pred HHHHHHHHHhhhC
Q 046194 375 LGQQIHGEGLKLG 387 (934)
Q Consensus 375 ~a~~i~~~~~~~g 387 (934)
.-..++....+.+
T Consensus 138 lf~~V~~ff~~~n 150 (167)
T PF07035_consen 138 LFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777666544
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.44 E-value=7.2 Score=37.53 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=69.5
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhccCCC
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN--SLIWRTVLGACCRANCRK 747 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~ 747 (934)
|-..|.+.-|..=|.+... +.|+ +..||.|.--|..+|+++.|.+.|+.. .+.|. ....|-=+.- .-- |+
T Consensus 75 YDSlGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~--gR 148 (297)
T COG4785 75 YDSLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYG--GR 148 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eec--Cc
Confidence 4456777777777766654 7788 778999998899999999999999887 55553 2222222222 223 89
Q ss_pred cHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 046194 748 TELGRKAANMLFEMEPQNAVNYVLLANMYASGG 780 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 780 (934)
.+.|.+-+.+..+-+|+||- .-.|+|....
T Consensus 149 ~~LAq~d~~~fYQ~D~~DPf---R~LWLYl~E~ 178 (297)
T COG4785 149 YKLAQDDLLAFYQDDPNDPF---RSLWLYLNEQ 178 (297)
T ss_pred hHhhHHHHHHHHhcCCCChH---HHHHHHHHHh
Confidence 99999999999999998863 2234554443
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=82.03 E-value=1.9 Score=28.47 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=13.2
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQM 653 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m 653 (934)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555556666666666666553
No 297
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.93 E-value=0.1 Score=48.26 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=48.0
Q ss_pred HHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHH
Q 046194 364 LSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEA 443 (934)
Q Consensus 364 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A 443 (934)
++.+.+.+.+......++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+ +++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~-~~a 89 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY-EEA 89 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH-HHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH-HHH
Confidence 344444444555555555555555556778888899999998877777777763322 3334555555555555 555
Q ss_pred HHHHHH
Q 046194 444 VKYYLD 449 (934)
Q Consensus 444 ~~l~~~ 449 (934)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555443
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.60 E-value=7.5 Score=35.91 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
++.+.++.++..+.-+.|..+..-..-++++...|+|.+|..+++.+.+.
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 56666666666666777777776667777777777777777776666544
No 299
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=81.55 E-value=38 Score=30.08 Aligned_cols=60 Identities=5% Similarity=0.014 Sum_probs=27.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCC
Q 046194 532 MISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACL 592 (934)
Q Consensus 532 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 592 (934)
.+......|+-++--+++.++.. .-+|++..+..+..||.+.|+..++.+++..+-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444455555555555555443 2244455555555555555555555555555555443
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.93 E-value=38 Score=33.82 Aligned_cols=167 Identities=17% Similarity=0.087 Sum_probs=98.7
Q ss_pred HcCCCchhHHHHHHHHhh-ccCChhHHHHHHhcCCC----C---CcccHHHHHHHHHhCCChhHHHHHHHHHHHC---CC
Q 046194 285 SGLFDMVAVGNGLVNMYA-KCGTIDDSRSVFRFMIG----K---DSVSWNTMISGLDQNGCYEEAIMNFCAMRRD---GL 353 (934)
Q Consensus 285 ~g~~~~~~~~~~li~~~~-~~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 353 (934)
++-+||+..-|..-+.-+ +...+++|+.-|.++.+ + .-.+.-.||..+.+.|++++.++.|.+|+.. .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 455677776654433222 34578899999987743 2 2234567899999999999999999998642 22
Q ss_pred C--CChhhHHHHHHHhhccCchHHHHHHHHHHhhh-----CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----
Q 046194 354 M--SSNFSLISTLSSCASLGWIMLGQQIHGEGLKL-----GLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEH----- 421 (934)
Q Consensus 354 ~--p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----- 421 (934)
. -+..+.++++.-.+...+.+.-...++.-++. +-..=-.+-+.|...|...|.+....+++.++...
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 2 23456677777777666666555555433321 00011123345666666667666666666655320
Q ss_pred ----------CccchHHHHHHHHhCCccHHHHHHHHHHHHH
Q 046194 422 ----------DQVSWNSVIGAFADSEALVSEAVKYYLDMRR 452 (934)
Q Consensus 422 ----------~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~ 452 (934)
=...|..=|+.|....+. .+...+|++...
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnN-KkLK~lYeqalh 219 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNN-KKLKALYEQALH 219 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhccc-HHHHHHHHHHHH
Confidence 123455556666666665 555566665543
No 301
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.24 E-value=68 Score=32.17 Aligned_cols=258 Identities=11% Similarity=0.116 Sum_probs=147.6
Q ss_pred cCCHHHHHHHHHhhccC-CCcch-----HHHHHHHHHhcCChhHHHHHHHHHHHc---CC--CCCHhHHHHHHHHHhchh
Q 046194 507 CGEMDDCEKIFARMSER-RDEVS-----WNSMISGYIHNELLPKAMNLVWFMMQR---GQ--RLDHFTFATVLSACASVA 575 (934)
Q Consensus 507 ~g~~~~A~~~~~~~~~~-p~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~a~~~~~ 575 (934)
..++++|..-|..+.+- |...- .-.+|..+.+.+++++.+..|.+|..- .+ .-+..+.++++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 45677888888877652 22223 345788888999999999888888542 11 234567777777766666
Q ss_pred hHHHHHHHHHHHHHh-----CCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--------CC-------cccccHHHH
Q 046194 576 TLERGMEVHACGVRA-----CLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--------RN-------VYSWNSMIS 635 (934)
Q Consensus 576 ~~~~a~~i~~~~~~~-----~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~ 635 (934)
+.+.-..+++--.+. +-..=..+-+-|...|...|.+..-.+++.++.+ .| ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 655555555432221 1111112223466777777888777777776641 11 225667777
Q ss_pred HHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHH-----hhCcHHHHHHHHHHhHHhhCCCCCccc-----HHHH
Q 046194 636 GYARHGHGDKALTLFSQMKLDG-PLPDHVTFVGVLSACS-----HAGLVDEGFKHFKSMSQVYGLIPQLEQ-----FSCM 704 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~~~~-----y~~l 704 (934)
.|-.+.+-.+-..+|++...-. --|-. ....+|+-|. +.|.+++|-.-|-+.-+.|.-.-++.- |-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888888888888876522 22333 3445666664 467788776544444343443333322 4455
Q ss_pred HHHHhhcC----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 705 VDLLGRAG----ELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 705 i~~l~~~g----~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
..++.+.| +-.+|.- .+..|.......|+.+|... +..+.+++.+.-..---+||-+-.++
T Consensus 279 ANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N---dI~eFE~Il~~~~~~IM~DpFIReh~ 343 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN---DIIEFERILKSNRSNIMDDPFIREHI 343 (440)
T ss_pred HHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc---cHHHHHHHHHhhhccccccHHHHHHH
Confidence 66676666 1222210 12345566778899988654 55555554443333223344443333
No 302
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.27 E-value=24 Score=39.49 Aligned_cols=148 Identities=16% Similarity=0.083 Sum_probs=101.2
Q ss_pred HhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhhCcHHHHHHHH
Q 046194 607 SKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHV-TFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 607 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
.-.|+++.|..++..++++ .-+.++.-+-.+|-.++|++ +.||.. -|... .+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~---------~s~D~d~rFela----l~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE---------LSTDPDQRFELA----LKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhh---------cCCChhhhhhhh----hhcCcHHHHHHHH
Confidence 3457788888877777632 33456666677777777766 345533 34333 3778999998875
Q ss_pred HHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 686 KSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 686 ~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
.+. -+..-|..|.++....|++..|.+-|.+.. -|.+|+-.+... |+-+.-..+.....+-...|
T Consensus 661 ~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~--g~~~~l~~la~~~~~~g~~N 725 (794)
T KOG0276|consen 661 VEA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSS--GNAEGLAVLASLAKKQGKNN 725 (794)
T ss_pred Hhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhc--CChhHHHHHHHHHHhhcccc
Confidence 544 235568999999999999999999888752 466777777777 78776666666665555544
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHH
Q 046194 766 AVNYVLLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 766 ~~~y~~l~~~~~~~g~~~~a~~~~~ 790 (934)
.--..|...|+.++..+++.
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHH
Confidence 33346677888888887754
No 303
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.19 E-value=2.9 Score=26.86 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCC
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEMEP 763 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p 763 (934)
+|..+...+... |+.+.|...++++++++|
T Consensus 3 ~~~~lg~~y~~~--~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQL--GDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHT--TSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHhhCC
Confidence 344455555555 666666666666666665
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.32 E-value=11 Score=34.26 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=44.0
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 796 (934)
++.+.++.+...+.-+.|+.+..-..-++++...|+|+||.++++.+.+.+
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 788888888888888889988888888999999999999999888887654
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.15 E-value=43 Score=30.57 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=51.6
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhccCCCcHH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKMPIT-PNSLIWRTVLGACCRANCRKTEL 750 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~~~~~~~~ 750 (934)
...++.+++..++..|.- +.|+ .+.-..-+..+.+.|+|++|..++++..-. |....-..|+..|-.. ..-..
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a--l~Dp~ 95 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA--KGDAE 95 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh--cCChH
Confidence 347788888888888854 6666 333334455677889999999999888433 3434445566666555 33233
Q ss_pred HHHHHHHHHhc
Q 046194 751 GRKAANMLFEM 761 (934)
Q Consensus 751 a~~~~~~~~~~ 761 (934)
-...+..+++-
T Consensus 96 Wr~~A~~~le~ 106 (153)
T TIGR02561 96 WHVHADEVLAR 106 (153)
T ss_pred HHHHHHHHHHh
Confidence 44444444444
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=77.71 E-value=2.8 Score=26.98 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=18.2
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666677777777777777777766
No 307
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.60 E-value=25 Score=29.41 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=48.0
Q ss_pred HHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 046194 604 DMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVG 667 (934)
Q Consensus 604 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 667 (934)
..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 34567899999999999999999999977654 46777888888888888887 666666643
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.47 E-value=63 Score=30.26 Aligned_cols=120 Identities=17% Similarity=0.043 Sum_probs=69.0
Q ss_pred hhccCChhHHHHHHhcCCCCCcccHHHHH-----HHHHhCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHH--hhccCc
Q 046194 301 YAKCGTIDDSRSVFRFMIGKDSVSWNTMI-----SGLDQNGCYEEAIMNFCAMRRDGLMSSNF-SLISTLSS--CASLGW 372 (934)
Q Consensus 301 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a--~~~~~~ 372 (934)
++..+..++|+.-|..+.+.+--+|-.|. ....+.|+...|+..|.+.-...-.|-.. -...+=.+ +...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 34667888888888888777666665544 33567788888888888887654444333 11111111 224455
Q ss_pred hHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 046194 373 IMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE 420 (934)
Q Consensus 373 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 420 (934)
++....-.+.+-..+-+.-.+.-.+|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555444444443333333334445555555566666666666665543
No 309
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.63 E-value=2.5 Score=38.85 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=34.2
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhc
Q 046194 567 VLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFD 620 (934)
Q Consensus 567 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 620 (934)
+++.+.+.+.++...++++.+.+.+...+....+.++..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344555556666666666666655555567777788888887776666666666
No 310
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.75 E-value=2.1 Score=27.87 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=13.6
Q ss_pred CC-cccHHHHHHHHhhcCChHHHH
Q 046194 696 PQ-LEQFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 696 p~-~~~y~~li~~l~~~g~~~~A~ 718 (934)
|+ ...|..+..+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44 555666666666666666654
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.57 E-value=18 Score=34.59 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=24.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPDHV--TFVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++..+.....+..
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444444444444444433333321 23344444444555555554444443
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.37 E-value=81 Score=34.03 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC----CCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 728 PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ----NAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 728 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
....+|..+...|++. |+++.|..++.++....+. .+.....-+.++...|+-.+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~--g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKA--GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHC--CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456899999999999 9999999999999887632 4667778899999999999999988877763
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.07 E-value=4.5 Score=24.29 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=20.1
Q ss_pred chHHHHHHHHHcCCChHHHHHHHH
Q 046194 767 VNYVLLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 767 ~~y~~l~~~~~~~g~~~~a~~~~~ 790 (934)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456789999999999999988754
No 314
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=74.99 E-value=75 Score=29.88 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=20.3
Q ss_pred HHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046194 381 GEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKV 414 (934)
Q Consensus 381 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 414 (934)
..+.+.+++|+..++..+++.+.+.|++.....+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344556667777777777777666665444333
No 315
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.70 E-value=63 Score=31.01 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=55.4
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHH-----HHHHHhhcCChHHHHHHHHhCCCCCC--HHHHHHHHHHHHhc
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSC-----MVDLLGRAGELDKIEEFINKMPITPN--SLIWRTVLGACCRA 743 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~-----li~~l~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~ 743 (934)
.+...|++++|...++..... |.-+.+.. |.......|.+|+|+..++... .++ ......-...+...
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~k 172 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHc
Confidence 466778888888777766542 33333333 4556777888888888887752 221 11222333455556
Q ss_pred cCCCcHHHHHHHHHHHhcCCCC
Q 046194 744 NCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
|+-+.|+..++++++.+++.
T Consensus 173 --g~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 173 --GDKQEARAAYEKALESDASP 192 (207)
T ss_pred --CchHHHHHHHHHHHHccCCh
Confidence 88888888888888887543
No 316
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.60 E-value=7.7 Score=28.30 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.6
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
+.-++.+. |+++.|.+..+.+++++|+|..
T Consensus 7 lAig~ykl--~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKL--GEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHT--T-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHh--hhHHHHHHHHHHHHhhCCCcHH
Confidence 44466777 9999999999999999999743
No 317
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.19 E-value=4.5 Score=25.83 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=23.7
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 767 VNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 767 ~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678999999999999999999887764
No 318
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.56 E-value=1.1e+02 Score=31.28 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=51.2
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
++.....|... |...+|.++.++++.++|-+...|..|.++|+..|+--+|.+-++.+.
T Consensus 282 lgkva~~yle~--g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEA--GKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHc--CChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34444567777 999999999999999999999999999999999999888888777765
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.38 E-value=6.1 Score=26.67 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.1
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 767 VNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 767 ~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.++..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4578899999999999999999887764
No 320
>PRK10941 hypothetical protein; Provisional
Probab=72.08 E-value=21 Score=36.61 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=52.3
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.+.|-.++... ++++.|.++.+.++.+.|+++.-+---+-+|.+.|.+..|..=++.-.+
T Consensus 184 l~nLK~~~~~~--~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEE--KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHc--CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56677788888 9999999999999999999998888999999999999999886665543
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=71.86 E-value=19 Score=29.86 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHh-hhCCCCchhHHHHHH
Q 046194 338 YEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGL-KLGLDSDVSVSNALL 399 (934)
Q Consensus 338 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~g~~~~~~~~~~li 399 (934)
.-++.+-++.+....+.|++....+.|+||.+.+|+..|..+++-+. +.|. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 34556667777777889999999999999999999999999988766 3332 333454443
No 322
>PRK12798 chemotaxis protein; Reviewed
Probab=71.82 E-value=1.6e+02 Score=32.14 Aligned_cols=205 Identities=18% Similarity=0.206 Sum_probs=128.2
Q ss_pred cCCHHHHHHHhccCCC----CCcccccHHHHHHH-HcCChHHHHHHHHHHHHCCCCCChhh----HHHHHHHHHhhCcHH
Q 046194 609 CGRIDYASRFFDLMPV----RNVYSWNSMISGYA-RHGHGDKALTLFSQMKLDGPLPDHVT----FVGVLSACSHAGLVD 679 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~ 679 (934)
.|+.++|.+.+..+.. +.+..|-.|+.+-. ...++.+|+.+|++..- .-|-... ..--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888888763 34446666666544 45678999999999876 3565332 333344567899999
Q ss_pred HHHHHHHHhHHhhCCCCCcccHHH-HHHHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHH
Q 046194 680 EGFKHFKSMSQVYGLIPQLEQFSC-MVDLLGRAG---ELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAA 755 (934)
Q Consensus 680 ~a~~~~~~m~~~~~~~p~~~~y~~-li~~l~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~ 755 (934)
++..+-......|...|=...|.. ++..+.+.+ ..+.-..++..|.-.--..+|-.+...-... |+.+.|..+.
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~--Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALID--GKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHc--CcHHHHHHHH
Confidence 998888877777766666444333 334444433 3444445555653222345777777777788 9999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHcC-----CChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHH
Q 046194 756 NMLFEMEPQNAVNYVLLANMYASG-----GKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYE 830 (934)
Q Consensus 756 ~~~~~~~p~~~~~y~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 830 (934)
+++..+.+. ...-...+++|... .+.+++.+.+..+-. +..+|....+.+
T Consensus 281 ~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~------------------------~~L~~~Dr~Ll~ 335 (421)
T PRK12798 281 ERALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR------------------------DKLSERDRALLE 335 (421)
T ss_pred HHHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh------------------------hhCChhhHHHHH
Confidence 999999744 33333444444332 335555544333321 235566666666
Q ss_pred HHHHHHHHHHHC
Q 046194 831 KLKELNQKMRDA 842 (934)
Q Consensus 831 ~l~~l~~~m~~~ 842 (934)
....+-.++.+.
T Consensus 336 AA~~va~~V~~~ 347 (421)
T PRK12798 336 AARSVARQVRRA 347 (421)
T ss_pred HHHHHHHHHhcC
Confidence 666666666543
No 323
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.13 E-value=26 Score=35.97 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=71.7
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCC--------cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046194 488 YNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRD--------EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRL 559 (934)
Q Consensus 488 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 559 (934)
.|.+....+...++..-....+++++...+-.+...|+ ..+|-.+ +-.-++++++.++..=+.-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhcccc
Confidence 34444555556666666777888888888877766432 2223222 23446778888888888899999
Q ss_pred CHhHHHHHHHHHhchhhHHHHHHHHHHHHHh
Q 046194 560 DHFTFATVLSACASVATLERGMEVHACGVRA 590 (934)
Q Consensus 560 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 590 (934)
|.+|++.+|+.+.+.++...|.++...++..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999888887776654
No 324
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=70.09 E-value=38 Score=32.39 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc
Q 046194 497 ENALLSCYGKCGEMDDCEKIFARMSE 522 (934)
Q Consensus 497 ~~~li~~~~~~g~~~~A~~~~~~~~~ 522 (934)
+..+.+.|.+.|+.+.|.+.|.++.+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~ 64 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARD 64 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 44555555555555555555555544
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.06 E-value=23 Score=29.41 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHH
Q 046194 645 KALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVD 706 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 706 (934)
++.+-++.+....+-|+.....+.+.||.+.+++..|.++|+..+.+ ...+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 44455556666678899888999999999999999999999988764 3224445666553
No 326
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.05 E-value=1.2e+02 Score=30.21 Aligned_cols=145 Identities=14% Similarity=0.105 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCC--CChh---hHHHHHHH
Q 046194 597 VIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPL--PDHV---TFVGVLSA 671 (934)
Q Consensus 597 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~---t~~~ll~a 671 (934)
..++--..+|..+|..+.|-..++..-+ ...+-++++|+++|++...-=.. -+.. .+..+-..
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 3455667788999988887766664321 12345678888888876542101 1111 13333344
Q ss_pred HHhhCcHHHHHHHHHHhHHh---hCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC---C--CCC-CHHHHHHHHHHHH
Q 046194 672 CSHAGLVDEGFKHFKSMSQV---YGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM---P--ITP-NSLIWRTVLGACC 741 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m---~--~~p-~~~~~~~ll~~~~ 741 (934)
+.+..++++|-..|.+-..- ..--|+ -..|...|-.+.-..++..|...+++. | ..| +..+...||.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 55666777766555433211 011122 123555556667778999999999884 2 122 4667888888874
Q ss_pred hccCCCcHHHHHHHH
Q 046194 742 RANCRKTELGRKAAN 756 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~ 756 (934)
. ||.|+...+..
T Consensus 240 ~---gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 E---GDIEEIKKVLS 251 (308)
T ss_pred c---CCHHHHHHHHc
Confidence 3 78777766653
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.86 E-value=27 Score=39.10 Aligned_cols=102 Identities=21% Similarity=0.151 Sum_probs=66.8
Q ss_pred HHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHH
Q 046194 299 NMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQ 378 (934)
Q Consensus 299 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 378 (934)
....+.|+++.|.++..+. .+..-|..|-.+..+.|++..|.+.|...+. |..|+-.+...|+-+....
T Consensus 645 elal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4456778888888876543 3667799999999999999999999887665 5566666666666655444
Q ss_pred HHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 046194 379 IHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFL 417 (934)
Q Consensus 379 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 417 (934)
+-....+.|.. |.-.-+|...|+++++.+++.+
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 44444444431 2222345556666666666544
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.30 E-value=26 Score=37.99 Aligned_cols=120 Identities=12% Similarity=0.157 Sum_probs=66.7
Q ss_pred cCChHHHH-HHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHH
Q 046194 640 HGHGDKAL-TLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 640 ~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~ 718 (934)
.|+...|- ++|.-+....-.|+.+...+.| ..+.|.++.+.+.+..... -+.....+..|++..+.+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34444333 3344444433345554444433 4567777777777666544 23344666777777777777777777
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 719 EFINKM-PIT-PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 719 ~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
.+-+-| +-+ .++.+...-....... |-++++...+++++.++|+.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l--~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADAL--QLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHH--hHHHHHHHHHHHHhccCChh
Confidence 777666 211 1222222333333444 66777777777777777653
No 329
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=69.25 E-value=14 Score=38.12 Aligned_cols=85 Identities=9% Similarity=0.089 Sum_probs=54.7
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChH
Q 046194 706 DLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWE 783 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~ 783 (934)
+-|.+.|+++||++.+.+. ...| |++.+..-..+|.+. ..+..|+.-.+.++.++..-...|..-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~--K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ--KSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH--HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 4566777777777777653 5556 666666666667666 67777777777777776555555555555666666666
Q ss_pred HHHHHHHHH
Q 046194 784 DVAKARKAM 792 (934)
Q Consensus 784 ~a~~~~~~m 792 (934)
||.+-.+..
T Consensus 183 EAKkD~E~v 191 (536)
T KOG4648|consen 183 EAKKDCETV 191 (536)
T ss_pred HHHHhHHHH
Confidence 665554443
No 330
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.72 E-value=30 Score=25.31 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHHCCc
Q 046194 769 YVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGY 844 (934)
Q Consensus 769 y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 844 (934)
...++-.+.+.|++++|.+..+.+.+ .+|.+.+...-...+.++|.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 45678889999999999999888874 345555555555566677777663
No 331
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.34 E-value=1.4e+02 Score=36.30 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=72.1
Q ss_pred chhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCC--CchhHHHHHHHHhhccCChhHH
Q 046194 233 VGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLF--DMVAVGNGLVNMYAKCGTIDDS 310 (934)
Q Consensus 233 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A 310 (934)
-|..|+..|...|+.++|++++.+....+..+=.....+ -..+-.++.+.|-+ +-.+.|+..+ -..+.+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~---~e~ii~YL~~l~~~~~~Li~~y~~wv----l~~~p~~g 578 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDG---LEKIIEYLKKLGAENLDLILEYADWV----LNKNPEAG 578 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhh---HHHHHHHHHHhcccchhHHHHHhhhh----hccCchhh
Confidence 488999999999999999999999976432111111111 12245555555533 2222332221 23455666
Q ss_pred HHHHhcCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhh
Q 046194 311 RSVFRFMIG--KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCA 368 (934)
Q Consensus 311 ~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 368 (934)
.++|-.-.. -...+-..+ -.|......+-++.+++.+....-.++..-.+.++.-+.
T Consensus 579 i~Ift~~~~~~~~sis~~~V-l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 579 IQIFTSEDKQEAESISRDDV-LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred eeeeeccChhhhccCCHHHH-HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 666654111 112222222 345666777888888888877665556555555555443
No 332
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.68 E-value=1e+02 Score=29.68 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=17.8
Q ss_pred HHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 739 ACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 739 ~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
+|.+. ..++.|..-++++++.+|..
T Consensus 177 ayek~--ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 177 AYEKM--EKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHhh--hhHHHHHHHHHHHHHhCcch
Confidence 44444 66777888888888888874
No 333
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.50 E-value=63 Score=29.47 Aligned_cols=51 Identities=8% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcc
Q 046194 320 KDSVSWNTMISGLDQNGC-YEEAIMNFCAMRRDGLMSSNFSLISTLSSCASL 370 (934)
Q Consensus 320 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 370 (934)
.+..+|.+++.+..+... ---+..+|..|++.+.+++..-|..++++|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 366788999998876666 345678899999888999999999999988764
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=67.44 E-value=24 Score=29.67 Aligned_cols=59 Identities=8% Similarity=0.096 Sum_probs=40.0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHH
Q 046194 646 ALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVD 706 (934)
Q Consensus 646 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 706 (934)
..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHH
Confidence 4444555555677899888999999999999999999999988875 3344447777664
No 335
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.18 E-value=39 Score=34.77 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=68.0
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC-CCcc---cccH-HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 046194 591 CLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV-RNVY---SWNS-MISGYARHGHGDKALTLFSQMKLDGPLPDHVTF 665 (934)
Q Consensus 591 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~---~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 665 (934)
|......+...++..-....+++++...+-.+.. |+.. -|+. .+.-++..-++++++.++..=++.|+-||..|+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhH
Confidence 4444555556666666667778888777665542 2211 1111 122223334677899888888889999999999
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
..++..+.+.+++.+|.++...|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999988887766654
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.24 E-value=11 Score=23.95 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.7
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 767 VNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 767 ~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999887764
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=65.42 E-value=8 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=14.8
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
+++.|...|...|++++|+.++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 345555566666666666666665543
No 338
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=64.24 E-value=58 Score=27.49 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=34.5
Q ss_pred hCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 723 KMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 723 ~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
.+.+-|++.+..+-|.+|++- +|+..|.+.++-+...-.+....|.-+
T Consensus 38 ~~DlVP~P~ii~aALrAcRRv--ND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRV--NDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 346789999999999999999 999999999998877765554466544
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.19 E-value=47 Score=36.10 Aligned_cols=139 Identities=13% Similarity=0.110 Sum_probs=93.1
Q ss_pred hhCcHHHHHH-HHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHH
Q 046194 674 HAGLVDEGFK-HFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTEL 750 (934)
Q Consensus 674 ~~g~~~~a~~-~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~ 750 (934)
..|++-.|-+ +|..+.. +.-.|+ +.-.........|.++.|...+... -+.....+...++...... |+.+.
T Consensus 301 ~~gd~~aas~~~~~~lr~-~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l--~r~~~ 375 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN-QQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL--ARWRE 375 (831)
T ss_pred hccCHHHHHHHHHHHHHh-CCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhch--hhHHH
Confidence 3466555544 4444433 333444 3333444567889999999999877 2445566778888888777 99999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCC
Q 046194 751 GRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGD 819 (934)
Q Consensus 751 a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~ 819 (934)
|...++.++.-+-+++...-.-+-.-...|-++++.-.++.+..-.. +....|+........|--|+
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~--~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP--ETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC--hhcccceeeeccceeccCcc
Confidence 99999999988877766654444444556778888888887765443 33345877766666565553
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.10 E-value=41 Score=28.14 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=49.7
Q ss_pred HhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHH
Q 046194 132 MYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLI 201 (934)
Q Consensus 132 ~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll 201 (934)
..... |+++.|..+.+..+.||+..|-++-.+ +.|-.+++..-+.+|-.+| .|...+|..=+
T Consensus 48 SLmNr-G~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-----~p~lq~Faag~ 109 (115)
T TIGR02508 48 SLMNR-GDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-----DPRLQTFVAGM 109 (115)
T ss_pred HHHcc-chHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-----CHHHHHHHHHH
Confidence 33444 999999999999999999999888764 5677788888888898888 67777766544
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=63.80 E-value=7.6 Score=24.48 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=23.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 768 NYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 768 ~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.+..++.+|.+.|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999988753
No 342
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.93 E-value=11 Score=29.94 Aligned_cols=47 Identities=6% Similarity=0.155 Sum_probs=25.4
Q ss_pred hhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHH
Q 046194 674 HAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEF 720 (934)
Q Consensus 674 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~ 720 (934)
+....++|+..|....++..-.|+ -.++.+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665554222222 33555666666666666665554
No 343
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.82 E-value=48 Score=31.35 Aligned_cols=127 Identities=12% Similarity=0.079 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHhhCcHHHHHHHHHHhHHhh----CCCCC-cccHHHHHHHHhhcCCh
Q 046194 643 GDKALTLFSQMKLDGPLPDHVT---FVGVLSACSHAGLVDEGFKHFKSMSQVY----GLIPQ-LEQFSCMVDLLGRAGEL 714 (934)
Q Consensus 643 ~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~y~~li~~l~~~g~~ 714 (934)
++.|.+.++.-...+ +.|... |...|.-+++.....++.++++...+++ .+.|+ ...+.++..+|...+.+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 455556555544432 223332 4444444556666677777777766543 45666 46667777766655421
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 715 DKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 715 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.||... .. ..+++|...++++.+.+|.|..+...|-- ..+|-++..++.+
T Consensus 86 ------------~~d~~~---------A~--~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~-------~~kap~lh~e~~~ 135 (186)
T PF06552_consen 86 ------------TPDTAE---------AE--EYFEKATEYFQKAVDEDPNNELYRKSLEM-------AAKAPELHMEIHK 135 (186)
T ss_dssp ---------------HHH---------HH--HHHHHHHHHHHHHHHH-TT-HHHHHHHHH-------HHTHHHHHHHHHH
T ss_pred ------------cCChHH---------HH--HHHHHHHHHHHHHHhcCCCcHHHHHHHHH-------HHhhHHHHHHHHH
Confidence 122100 01 33567788889999999998655444432 2457777777777
Q ss_pred CCCcCC
Q 046194 795 AEVKKE 800 (934)
Q Consensus 795 ~~~~~~ 800 (934)
++....
T Consensus 136 ~~~~~q 141 (186)
T PF06552_consen 136 QGLGQQ 141 (186)
T ss_dssp SSS---
T ss_pred HHhhhh
Confidence 765444
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=61.56 E-value=43 Score=32.35 Aligned_cols=74 Identities=9% Similarity=0.053 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhC--CCCCcccHHHHHHHHhhcCChHHHH
Q 046194 644 DKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYG--LIPQLEQFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 644 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~y~~li~~l~~~g~~~~A~ 718 (934)
++|...|-++...+.- +....-..+..|-...+.++++.++....+-+. -.+|++.+.+|+..+-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5677777777766533 333333344444446677777777777665322 2355677777777777777777664
No 345
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=60.83 E-value=2e+02 Score=30.86 Aligned_cols=114 Identities=9% Similarity=0.160 Sum_probs=81.9
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCC------CHH--HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC-------Cc
Q 046194 703 CMVDLLGRAGELDKIEEFINKMPITP------NSL--IWRTVLGACCRANCRKTELGRKAANMLFEMEPQN-------AV 767 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m~~~p------~~~--~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~ 767 (934)
.|...+-.+|++++|.+++.+.+++. ... ..---+..|... +|+-.|....+++....-++ ..
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~--~D~vra~i~skKI~~K~F~~~~~~~lKlk 213 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLR--LDYVRAQIISKKINKKFFEKPDVQELKLK 213 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhhHHhcCCccHHHHHHH
Confidence 35667778999999999999885432 111 112234566667 89999988888876553322 23
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcC
Q 046194 768 NYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAG 818 (934)
Q Consensus 768 ~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~ 818 (934)
+|.++..+....+.+-++-+.++.+-+-|..+...--|+.+...+-.|..=
T Consensus 214 yY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~L 264 (439)
T KOG1498|consen 214 YYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVL 264 (439)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEee
Confidence 588999999999999999999999988776555444688887776556553
No 346
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.67 E-value=40 Score=30.76 Aligned_cols=89 Identities=7% Similarity=0.161 Sum_probs=64.9
Q ss_pred HHHhcCCCCc--hhhhHHHHHHhhcCChhhHHHhhccCC---------CCChhhHHHHHHHHhcCCC-hhhHHHHHHHHH
Q 046194 11 ILKHGFAYDV--FLCNTLINVYVRVGDLASASKLFDEMP---------DRNSVSWACIVSGYTHKGM-SNEACKMFKEMV 78 (934)
Q Consensus 11 ~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~ 78 (934)
+...+..++. ...|++++-....+++.....+++.+. ..+-.+|.+++.+.++... ---+..+|..|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 4445666665 346888888888888888777777764 2456678888888866665 445667888888
Q ss_pred HcCCCCCcccHHHHHHHhhhc
Q 046194 79 RAGFLLNRYALGSVLRACQEC 99 (934)
Q Consensus 79 ~~g~~~~~~~~~~ll~~~~~~ 99 (934)
+.+.+++..-|..++++|.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 888888888888888888664
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=58.90 E-value=41 Score=32.52 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=51.7
Q ss_pred HhhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC----CCchHHHHHHHHHcCCC
Q 046194 708 LGRAGELDKIEEFINKMPITP--NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ----NAVNYVLLANMYASGGK 781 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~y~~l~~~~~~~g~ 781 (934)
..|.|+ ++|.+.|-.+.-.| +....-.-+..+... .|.+.+...+-+++++.++ |+..+..|+.+|.+.|+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k--rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTK--RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 344444 45666665552222 333444445555556 7889999999998888644 57789999999999999
Q ss_pred hHHHH
Q 046194 782 WEDVA 786 (934)
Q Consensus 782 ~~~a~ 786 (934)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 99884
No 348
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=58.85 E-value=40 Score=31.88 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=35.5
Q ss_pred ccccHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCC-hhhHHHHHHHHHhhC
Q 046194 628 YSWNSMISGYARHGHGDKALTLFSQMKLD-----GPLPD-HVTFVGVLSACSHAG 676 (934)
Q Consensus 628 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~t~~~ll~a~~~~g 676 (934)
.-|...+.-+++..+..++.+++++..++ .+.|+ ..++..+..++...+
T Consensus 29 ~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 29 TNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 35667777778888888999999988753 46788 567888888877654
No 349
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.18 E-value=6.6e+02 Score=34.22 Aligned_cols=278 Identities=16% Similarity=0.058 Sum_probs=144.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchh
Q 046194 497 ENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVA 575 (934)
Q Consensus 497 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~ 575 (934)
+-.+...|+..+++|....+...-... .+...-|.-....|++..|..-|+.+.+. .|+ ..+++.++..-...+
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~---~sl~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFAD---PSLYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcC---ccHHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhccc
Confidence 334445777777777666655532221 12233444556677788888888877764 344 566666666655666
Q ss_pred hHHHHHHHHHHHHHhCCCCcHhHH-HHHHHHHHhcCCHHHHHHHhccCCCCCcccccHH-HH-HHHHcC--ChHHHHHHH
Q 046194 576 TLERGMEVHACGVRACLEFDVVIG-SALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSM-IS-GYARHG--HGDKALTLF 650 (934)
Q Consensus 576 ~~~~a~~i~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g--~~~~A~~l~ 650 (934)
.++...-..+....+ ..+...-+ +.=+.+-.+.++++.-..... ..+..+|.+. +. ...+.. +.-.-.++.
T Consensus 1498 ~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred chhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 665555433333222 12222222 223444466677766666555 5566666665 22 222221 111111233
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHH----------HHhHHhhCCCCCcccHH-H--HHHHHhhcCChHHH
Q 046194 651 SQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHF----------KSMSQVYGLIPQLEQFS-C--MVDLLGRAGELDKI 717 (934)
Q Consensus 651 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~----------~~m~~~~~~~p~~~~y~-~--li~~l~~~g~~~~A 717 (934)
+.+++.-+.| +.+|+..|.+..+.++. .......+..|+...-+ . -..-+.+.+..-.+
T Consensus 1574 ~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~ 1645 (2382)
T KOG0890|consen 1574 ENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRI 1645 (2382)
T ss_pred HHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHH
Confidence 3333321111 22233322222222211 11112224444422111 1 01112222222223
Q ss_pred HHHHHhC-------CCCC-----CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHH
Q 046194 718 EEFINKM-------PITP-----NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDV 785 (934)
Q Consensus 718 ~~~~~~m-------~~~p-----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a 785 (934)
.+-+-.+ ..+| -..+|-.....++.. |..+.|..+.-.+.+..+ +..+.-.+..+-..|+-..|
T Consensus 1646 ~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~a--G~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1646 KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLA--GHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNA 1721 (2382)
T ss_pred HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc--ccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHH
Confidence 3322221 1232 255899999999999 999999999888888774 57899999999999999999
Q ss_pred HHHHHHHHhC
Q 046194 786 AKARKAMKEA 795 (934)
Q Consensus 786 ~~~~~~m~~~ 795 (934)
..+++...+.
T Consensus 1722 l~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1722 LSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHh
Confidence 9998877644
No 350
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.98 E-value=15 Score=42.99 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=67.7
Q ss_pred HHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCC
Q 046194 668 VLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRK 747 (934)
Q Consensus 668 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 747 (934)
+|.-+.+.|-.+-|+.+.+.=...+ ++...+|+++.|++..++.. |..+|..|....... ||
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~q--gn 687 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQ--GN 687 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHh--cc
Confidence 4445567777777777654443332 33457899999999888763 667899999988888 99
Q ss_pred cHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHH
Q 046194 748 TELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~ 790 (934)
.+.++..+++.... ..|+-+|.-.|+.++-.++.+
T Consensus 688 ~~IaEm~yQ~~knf--------ekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 688 HQIAEMCYQRTKNF--------EKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred hHHHHHHHHHhhhh--------hheeEEEEEeCCHHHHHHHHH
Confidence 99999999887544 345556666777766554433
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=56.75 E-value=17 Score=21.86 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=9.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHH
Q 046194 769 YVLLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 769 y~~l~~~~~~~g~~~~a~~~~~ 790 (934)
|..++.+|...|++++|...++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~ 25 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYE 25 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444444444444444433
No 352
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.00 E-value=3.2e+02 Score=30.26 Aligned_cols=40 Identities=10% Similarity=0.108 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCCCccc--hhHHHHHHHhcCChHHHHHHHHH
Q 046194 217 QILAMVKKAGLLSDLYV--GSALVSGFARLGNFYYARKIFEQ 256 (934)
Q Consensus 217 ~i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~ 256 (934)
++.+.+.+.|..|+... -.+.+...+..|+.+-+.-+++.
T Consensus 116 ~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 34444555555554332 22344455566666555555443
No 353
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.63 E-value=89 Score=26.67 Aligned_cols=87 Identities=9% Similarity=0.106 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 576 TLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 576 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34555555555555433 122222233344567888888855555556778887765543 467777788877777766
Q ss_pred CCCCCChhhHH
Q 046194 656 DGPLPDHVTFV 666 (934)
Q Consensus 656 ~g~~p~~~t~~ 666 (934)
+| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.37 E-value=2.5e+02 Score=28.75 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=33.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhh-------HHHHHHHHHhhCcHHHHHH
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGPLPDHVT-------FVGVLSACSHAGLVDEGFK 683 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~~~a~~ 683 (934)
.+-..+.+++++|+..+.+...+|+..|..+ ...+...|...|+...-.+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 3445567889999999999999988877655 3334445555565444333
No 355
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.77 E-value=1.9e+02 Score=27.27 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=74.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc-cHHHH--HHHHhhcC
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPDHV-TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE-QFSCM--VDLLGRAG 712 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~l--i~~l~~~g 712 (934)
+++.+..++|+.-|.++.+.|...-.+ ...-......+.|+...|...|.++-.+ .-.|... -...| ..++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 356677888888888888776432221 1112223356788888888888888764 2333322 11222 23456778
Q ss_pred ChHHHHHHHHhCC--CCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 713 ELDKIEEFINKMP--ITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 713 ~~~~A~~~~~~m~--~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
.+++....++.+. -.| ....-.+|.-+-.+. |++..|...++.+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~ka--gd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA--GDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc--cchHHHHHHHHHHHc
Confidence 8888887777762 223 233445666666777 888888888887766
No 356
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.49 E-value=1.8e+02 Score=33.75 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhCCCC-cHhHHHHHHHH-HHhcCCHHHHHHHhccCCC--------CCcccccHHHHHHHHcC-----C
Q 046194 578 ERGMEVHACGVRACLEF-DVVIGSALVDM-YSKCGRIDYASRFFDLMPV--------RNVYSWNSMISGYARHG-----H 642 (934)
Q Consensus 578 ~~a~~i~~~~~~~~~~~-~~~~~~~li~~-y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-----~ 642 (934)
..+.+.++...+.|... -.........+ +....+.+.|...|..+.+ -+.....-+...|.+.. +
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d 308 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKID 308 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcccc
Confidence 44555555555544221 11111222223 4456677777777765532 12334455555555532 3
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-hCcHHHHHHHHHHhHH
Q 046194 643 GDKALTLFSQMKLDGPLPDHVTFVGVLSACSH-AGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 643 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~ 690 (934)
.+.|+.+|.+.-+.| .|+...+...+.-... ..+...|.++|.....
T Consensus 309 ~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 309 YEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 444666666665555 4444433322221111 1234455555555544
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=54.44 E-value=2.2e+02 Score=27.96 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=76.8
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCM 704 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~l 704 (934)
.+..|+.+.+.++..+|+...++-.+. +|. .-+-..++..++-.|++++|..-++-..+ +.|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 445677788888889999888887775 454 55566677788899999999887766543 3444 4556666
Q ss_pred HHHHhhcCChHHHH-HHHHhC--C---CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 705 VDLLGRAGELDKIE-EFINKM--P---ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 705 i~~l~~~g~~~~A~-~~~~~m--~---~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
|++- .+. ++|..- | -.|.+.=...|+.+...|.-|.-+.....-+.+++--|..++.
T Consensus 79 ir~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~ 141 (273)
T COG4455 79 IRCE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGH 141 (273)
T ss_pred HHHH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcc
Confidence 5532 222 233321 2 1233333345555555553234444556666777777765443
No 358
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=54.37 E-value=1.4e+02 Score=33.66 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCC--Ccc---cccHHHHHHHHcCChHHHHHHHHHHHHC
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPVR--NVY---SWNSMISGYARHGHGDKALTLFSQMKLD 656 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~ 656 (934)
.|+.-|.+++++++|..++..|.-. ... +.+.+.+.+.+..-..+....++.+...
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 4777899999999999999988621 112 2333344444444444555555555443
No 359
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=53.90 E-value=2.8e+02 Score=28.92 Aligned_cols=163 Identities=11% Similarity=0.178 Sum_probs=94.5
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC-CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 046194 583 VHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV-RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD 661 (934)
Q Consensus 583 i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 661 (934)
+++.+..+++-++.....+-++.+.+...++.+..++..... .|. -.++.. +-.+.++-++++.++ +.|=
T Consensus 22 LlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~------p~a~~e--kr~~Vla~lkeLe~e-v~pi 92 (432)
T KOG2758|consen 22 LLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDM------PNALVE--KRTEVLAELKELEEE-VAPI 92 (432)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccc------hHHHHH--HHHHHHHHHHHHHHH-HHHH
Confidence 445555566666777777777788888888888888877631 111 111111 112334444444432 1111
Q ss_pred hhhHHHHH---HHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHh---CCCCCCH----
Q 046194 662 HVTFVGVL---SACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINK---MPITPNS---- 730 (934)
Q Consensus 662 ~~t~~~ll---~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~---m~~~p~~---- 730 (934)
..++ ..-.......+....++.+.+.|++.|+ ..+.--...-...+|++..|-.++-- .-..||.
T Consensus 93 ----v~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~ls 168 (432)
T KOG2758|consen 93 ----VKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLS 168 (432)
T ss_pred ----HHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHH
Confidence 1111 1111222334457788888899999999 66666677777889999999876543 3333443
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 731 LIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 731 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
..|+-|.+-... .+++.|..-..++.+.
T Consensus 169 alwGKlASEIL~---qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 169 ALWGKLASEILT---QNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHH---hhHHHHHHHHHHHHHH
Confidence 467766665544 3677777766666554
No 360
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.80 E-value=9.4 Score=39.61 Aligned_cols=90 Identities=16% Similarity=0.305 Sum_probs=62.7
Q ss_pred cCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH
Q 046194 711 AGELDKIEEFINKM-PITPNS-LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 711 ~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
.|.+++|++.+... ++.|.. ..+..-.+++... +....+++-+..+++++|+....|-.-+.+....|+|++|...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl--~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKL--KKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeec--cCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 45566666666554 444432 3333344455555 6777788888888888888888888888888888888888888
Q ss_pred HHHHHhCCCcCCCc
Q 046194 789 RKAMKEAEVKKEAG 802 (934)
Q Consensus 789 ~~~m~~~~~~~~~~ 802 (934)
+....+.++....+
T Consensus 205 l~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 205 LALACKLDYDEANS 218 (377)
T ss_pred HHHHHhccccHHHH
Confidence 88887777666555
No 361
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.70 E-value=64 Score=27.84 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=24.6
Q ss_pred chhHHHHHHHhcCChHHHHHHHHHhhh
Q 046194 233 VGSALVSGFARLGNFYYARKIFEQMIQ 259 (934)
Q Consensus 233 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 259 (934)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478899999999999999999999875
No 362
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=52.65 E-value=2.8e+02 Score=28.64 Aligned_cols=60 Identities=7% Similarity=0.113 Sum_probs=41.5
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--C--CcchHHHHHHHHHhcCChhHHHHH
Q 046194 489 NVANETTIENALLSCYGKCGEMDDCEKIFARMSER--R--DEVSWNSMISGYIHNELLPKAMNL 548 (934)
Q Consensus 489 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~l 548 (934)
+-.++..+....++.+++.+++.+-.++++..... | |...|...|......|+..-..++
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 34556666677777788888888777777765443 2 777788888888888886544443
No 363
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.61 E-value=1.1e+02 Score=31.23 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=23.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhH
Q 046194 329 ISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSL 360 (934)
Q Consensus 329 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 360 (934)
..-.++.+++++|+..+.+....|+..|..|.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 34456677888888888888888877766554
No 364
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.39 E-value=2.8e+02 Score=28.48 Aligned_cols=82 Identities=18% Similarity=0.213 Sum_probs=44.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH 674 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 674 (934)
|+.....+...|.+.|++.+|+.-|-.-..++...+-.++.-....|...++ |...-..++ -|.-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHH
Confidence 7788888999999999999999877554433333222222222222222111 111112222 3555
Q ss_pred hCcHHHHHHHHHHhHHh
Q 046194 675 AGLVDEGFKHFKSMSQV 691 (934)
Q Consensus 675 ~g~~~~a~~~~~~m~~~ 691 (934)
.+++..|...++...+.
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 67888888887777654
No 365
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.32 E-value=77 Score=31.38 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHH-------HHHHhcCC--C----CCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 730 SLIWRTVLGACCRANCRKTELGRKAA-------NMLFEMEP--Q----NAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 730 ~~~~~~ll~~~~~~~~~~~~~a~~~~-------~~~~~~~p--~----~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
+..+.-+.+.|+.. |+.+.-.... +++.+.+. . +.....+++.+..+.|+.++|.+.+..+...
T Consensus 118 A~l~LrlAWlyR~~--~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 118 AGLCLRLAWLYRDL--GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34566677778777 7755444444 44444432 2 2356778999999999999999999988754
No 366
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.93 E-value=1.9e+02 Score=29.00 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=15.3
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046194 710 RAGELDKIEEFINKMPITPNSLIWRTVLGACCRA 743 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 743 (934)
.+|.+.||..+.+...-+-....|..++..|...
T Consensus 152 a~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 3455555555555442211133455555555433
No 367
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.20 E-value=3.8e+02 Score=29.67 Aligned_cols=197 Identities=10% Similarity=0.061 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCCCchh--hhHHHHHHhhcCChhhHHHhhccCCCCChh---hHHHHHHHHhcCCChhhHHHHHHHHHHcC
Q 046194 7 FHLQILKHGFAYDVFL--CNTLINVYVRVGDLASASKLFDEMPDRNSV---SWACIVSGYTHKGMSNEACKMFKEMVRAG 81 (934)
Q Consensus 7 ~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g 81 (934)
+...+++.|..|+... ..+.+...++.|+.+-+.-+++.-..++.. .++ .+...++.|+.+.+.. +.+.|
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~~~v~~----Ll~~~ 91 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVKAVEE----LLDLG 91 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCHHHHHH----HHHcC
Confidence 3455666777666533 455566666777776665555543333221 222 2334445666654333 33344
Q ss_pred CCCC----cccHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCch--hhHHHHHHhhhCCCChHHHHHHhhccCCC--
Q 046194 82 FLLN----RYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGL--VSNVLIAMYGSCLESTDCARRIFEEIETR-- 153 (934)
Q Consensus 82 ~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~li~~y~~~~g~~~~a~~~f~~~~~~-- 153 (934)
...+ ..-.+.|..|+. . +.. ++...+++.|..++.. ...+.+...+.. |+.+.+..+++.-...
T Consensus 92 ~~~~~~~~~~g~tpL~~A~~-~--~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~-~~~~~v~~Ll~~g~~~~~ 163 (413)
T PHA02875 92 KFADDVFYKDGMTPLHLATI-L--KKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMM-GDIKGIELLIDHKACLDI 163 (413)
T ss_pred CcccccccCCCCCHHHHHHH-h--CCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhcCCCCCC
Confidence 3221 112233333332 2 333 3455556666555432 123444444555 7777777666654432
Q ss_pred -CcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeH---HHHHHHHhcCccccchHHHHHHHHHHHhCCCC
Q 046194 154 -DLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTF---GSLITAAYSSVLSGSYLLQQILAMVKKAGLLS 229 (934)
Q Consensus 154 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~---~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~ 229 (934)
|..-++.+..+ +..|+.+ +.+.+.+.|. .|+...- .+.+..++..+. .++.+.+.+.|..+
T Consensus 164 ~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga----~~n~~~~~~~~t~l~~A~~~~~------~~iv~~Ll~~gad~ 228 (413)
T PHA02875 164 EDCCGCTPLIIA-MAKGDIA----ICKMLLDSGA----NIDYFGKNGCVAALCYAIENNK------IDIVRLFIKRGADC 228 (413)
T ss_pred CCCCCCCHHHHH-HHcCCHH----HHHHHHhCCC----CCCcCCCCCCchHHHHHHHcCC------HHHHHHHHHCCcCc
Confidence 22234444333 3445433 3444455565 4443321 233332233332 24455556666665
Q ss_pred Cc
Q 046194 230 DL 231 (934)
Q Consensus 230 ~~ 231 (934)
+.
T Consensus 229 n~ 230 (413)
T PHA02875 229 NI 230 (413)
T ss_pred ch
Confidence 53
No 368
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.89 E-value=1.3e+02 Score=32.81 Aligned_cols=51 Identities=4% Similarity=-0.031 Sum_probs=30.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHH--hhCcHHHHHHHHHHhHH
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPDHV--TFVGVLSACS--HAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 690 (934)
..+++..|.++|+++.+. ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566777777777777775 444443 2333334433 34566677777776655
No 369
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.68 E-value=26 Score=38.37 Aligned_cols=84 Identities=15% Similarity=0.130 Sum_probs=57.1
Q ss_pred HhhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHH
Q 046194 708 LGRAGELDKIEEFINKM-PITPNSLIWRTVL-GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDV 785 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll-~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a 785 (934)
+...+.++.|..++.+. .++|+-.+|-+.= .++.+. +++..|..=+.++++++|...-.|+.-+.+..+.+++.+|
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~--e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKV--ESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheee--chhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 34455666666666655 5666544433322 445555 7777788888888888888888888888888888888888
Q ss_pred HHHHHHHH
Q 046194 786 AKARKAMK 793 (934)
Q Consensus 786 ~~~~~~m~ 793 (934)
...++...
T Consensus 92 ~~~l~~~~ 99 (476)
T KOG0376|consen 92 LLDLEKVK 99 (476)
T ss_pred HHHHHHhh
Confidence 77766554
No 370
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=50.21 E-value=32 Score=28.54 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 752 RKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 752 ~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
...++..++.+|+|...-..++..+...|++++|.+.+-.+.++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45677788899999999999999999999999998887776543
No 371
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.57 E-value=1.5e+02 Score=26.69 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=14.8
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 737 LGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 737 l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
.-+|.+. ++++.+.+..+.+++.+|+
T Consensus 78 Avg~yRl--keY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 78 AVGHYRL--KEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHH--hhHHHHHHHHHHHHhhCCC
Confidence 3344455 5666666666666666655
No 372
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.17 E-value=1.6e+02 Score=29.15 Aligned_cols=150 Identities=7% Similarity=0.129 Sum_probs=81.5
Q ss_pred HHHHHHhhcCChhhHHHhhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcccHHHHHHHhhhcCCCCh
Q 046194 25 TLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGF 104 (934)
Q Consensus 25 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 104 (934)
+.+..|++..++.-|-..++++-+|=..-+.. --|.+..+-+---++.+-....++..+...+.+++-- ..||.
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPIQSRCAi--LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiift----a~GDM 208 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPIQSRCAI--LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFT----AQGDM 208 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhHHhhhHh--hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhh----ccchH
Confidence 34566666666666666666666553322211 1233333333333344444445555544444443321 11555
Q ss_pred hhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 046194 105 KFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQRE 184 (934)
Q Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 184 (934)
+++....+.-.. - -.+-.+..+|.-..+|.......|+..+ ..+++++|.+++.++.+.
T Consensus 209 RQalNnLQst~~------------------g--~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 209 RQALNNLQSTVN------------------G--FGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKL 267 (333)
T ss_pred HHHHHHHHHHhc------------------c--ccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHc
Confidence 544433322111 1 1233456677777777777777788765 456899999999999999
Q ss_pred cCCCCCCCCceeHHHHHHHHhc
Q 046194 185 GFRYSLKPNEYTFGSLITAAYS 206 (934)
Q Consensus 185 g~~~~~~p~~~t~~~ll~a~~~ 206 (934)
|. .|.. ..+++.++|..
T Consensus 268 gy----sp~D-ii~~~FRv~K~ 284 (333)
T KOG0991|consen 268 GY----SPED-IITTLFRVVKN 284 (333)
T ss_pred CC----CHHH-HHHHHHHHHHh
Confidence 97 5543 33455555543
No 373
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=48.53 E-value=57 Score=31.81 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
.+..+..+.+.+.+++|+...++- +-+| |...-..|...++.. |+++.|..-.+.+-++.|++..-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcva--Gdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVA--GDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhc--chHHHHHHHHHHHhhcCcccchH
Confidence 444566778888888888877654 5555 445566777888888 89999988888888888886543
No 374
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.79 E-value=2.2e+02 Score=28.50 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|++-+++.-...++..+|.|..+|..-+.+.+..=+..+|..=+....+
T Consensus 244 ~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 244 EEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 6777777777788999999999999999998888788888777666653
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.34 E-value=54 Score=26.21 Aligned_cols=47 Identities=11% Similarity=-0.014 Sum_probs=35.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPD--HVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
...+.++|+..|+...+.-..|. -.++..++.+++..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999887643333 356777888999999999988763
No 376
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.70 E-value=5.3e+02 Score=30.02 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHhcCCCch-hHHHHHHHH-HHhcCCHHHHHHHHHhhcc-------CCCcchHHHHHHHHHhcC-----
Q 046194 475 GKLGHQVHAQVIKYNVANET-TIENALLSC-YGKCGEMDDCEKIFARMSE-------RRDEVSWNSMISGYIHNE----- 540 (934)
Q Consensus 475 ~~~a~~i~~~~~~~g~~~~~-~~~~~li~~-~~~~g~~~~A~~~~~~~~~-------~p~~~~~~~li~~~~~~g----- 540 (934)
...+.+.++...+.|..... ........+ ++...+++.|...|..... +.+....+-+-..|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 34455556665555532111 111222222 3445566666666665543 223334445555555432
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc-hhhHHHHHHHHHHHHHhC
Q 046194 541 LLPKAMNLVWFMMQRGQRLDHFTFATVLSACAS-VATLERGMEVHACGVRAC 591 (934)
Q Consensus 541 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~i~~~~~~~~ 591 (934)
+.+.|+.+|.+....| .|+...+...+.-... -.+...|.+++..+.+.|
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 3444555555555544 2333222222221111 123445555555555444
No 377
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=46.09 E-value=32 Score=21.43 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=17.8
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
+..++... |+.+.|...++++++..|+
T Consensus 6 ~a~~~~~~--g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKL--GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHH--CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHc--cCHHHHHHHHHHHHHHCcC
Confidence 34444555 7777777777777777765
No 378
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.71 E-value=3.2e+02 Score=27.25 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=21.3
Q ss_pred CCcHHHHHHHHHHHhcCCCCCch--HHHHHHH
Q 046194 746 RKTELGRKAANMLFEMEPQNAVN--YVLLANM 775 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~--y~~l~~~ 775 (934)
.|.-.+.++.++-.+++|.-..+ +..|-++
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~dsREckflk~L 240 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDSRECKFLKDL 240 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 67778888999999999975444 3344443
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=45.59 E-value=38 Score=23.60 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 770 VLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 770 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
..|+.+|...|+.+.|.++++.+.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46889999999999999999988753
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.60 E-value=75 Score=35.69 Aligned_cols=73 Identities=10% Similarity=0.028 Sum_probs=43.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM-P-ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...|...+.+.|...+|-.++.+. . ....+.++-++..++... .|++.|.+.++.+.+++|+++..-..|-.+
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l--~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL--KNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH--hhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 334444555555555555555433 1 122344556666666666 788888888888888888887766555444
No 381
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.41 E-value=1.9e+02 Score=29.57 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=56.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhh-
Q 046194 634 ISGYARHGHGDKALTLFSQMKL--DGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGR- 710 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~- 710 (934)
|.+++..+++.+++...-+--+ +.++|...-.. |-.|++.|......++-...... .-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6677777788777654433322 12444433333 33578888888888887777664 222224558888777654
Q ss_pred ----cCChHHHHHHHHhC
Q 046194 711 ----AGELDKIEEFINKM 724 (934)
Q Consensus 711 ----~g~~~~A~~~~~~m 724 (934)
.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 69999999998544
No 382
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.90 E-value=4.6e+02 Score=29.10 Aligned_cols=48 Identities=23% Similarity=0.232 Sum_probs=33.5
Q ss_pred cccHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhC
Q 046194 629 SWNSMISGYAR---HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAG 676 (934)
Q Consensus 629 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 676 (934)
.+..+++++.+ .++.+.|+..+.+|.+.|..|..+.-..+..++..-|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34445555555 4788999999999999998887666555555555444
No 383
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=43.52 E-value=7.5e+02 Score=30.90 Aligned_cols=19 Identities=0% Similarity=0.083 Sum_probs=9.2
Q ss_pred CCchhHHHHHHHHHHhcCC
Q 046194 491 ANETTIENALLSCYGKCGE 509 (934)
Q Consensus 491 ~~~~~~~~~li~~~~~~g~ 509 (934)
.+++.+...-+..+.+.+.
T Consensus 632 D~d~~VR~~Av~~L~~~~~ 650 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP 650 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc
Confidence 3444444445555555444
No 384
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.02 E-value=2.4e+02 Score=28.17 Aligned_cols=81 Identities=12% Similarity=-0.090 Sum_probs=47.3
Q ss_pred HHhcCCHHHHHHHhccCC--CCCcc-cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhhCcHHHH
Q 046194 606 YSKCGRIDYASRFFDLMP--VRNVY-SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTF-VGVLSACSHAGLVDEG 681 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a 681 (934)
|....+++.|..-+.+.. .|++. -|+.-+.+|.+..+++.+..--++.++ +.||.+-= ..+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 444456666666665543 45543 455566677777777777766666666 56664432 2233344555666667
Q ss_pred HHHHHHh
Q 046194 682 FKHFKSM 688 (934)
Q Consensus 682 ~~~~~~m 688 (934)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6666655
No 385
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.70 E-value=1.5e+02 Score=25.62 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=21.3
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
-|..|+.-|...|.+++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888887766
No 386
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.12 E-value=31 Score=30.68 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=27.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046194 636 GYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSAC 672 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 672 (934)
.....|.-..|..+|++|++.|-+||. |+.|+.++
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 334456677899999999999988884 77777655
No 387
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=38.54 E-value=4.7e+02 Score=27.09 Aligned_cols=55 Identities=9% Similarity=0.027 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046194 499 ALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMM 553 (934)
Q Consensus 499 ~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 553 (934)
.....|.++|.+.+|..+.+....- | +...|-.++..++..|+--.|.+-++.+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445677777787777777766553 2 55667777777777777777766666654
No 388
>PF13934 ELYS: Nuclear pore complex assembly
Probab=38.41 E-value=4.2e+02 Score=26.50 Aligned_cols=113 Identities=16% Similarity=0.245 Sum_probs=67.4
Q ss_pred hcCCHHHHHHHhccCCCCCcccc-c-HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhhCcHHHHH
Q 046194 608 KCGRIDYASRFFDLMPVRNVYSW-N-SMISGYARHGHGDKALTLFSQMKLDGPLPDHVTF---VGVLSACSHAGLVDEGF 682 (934)
Q Consensus 608 ~~g~~~~A~~~~~~~~~~~~~~~-~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~ 682 (934)
..+++++|.+.+-. |.+..| . -++.++...|+.+.|+.+++.+. |+..+. ..++.+ ...+.+.||.
T Consensus 90 D~~~~~~A~~~L~~---ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~-----p~l~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 90 DHGDFEEALELLSH---PSLIPWFPDKILQALLRRGDPKLALRYLRAVG-----PPLSSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred ChHhHHHHHHHhCC---CCCCcccHHHHHHHHHHCCChhHHHHHHHhcC-----CCCCCHHHHHHHHHH-HHcCCHHHHH
Confidence 45777888877744 333222 2 47888888899999999888753 332222 222333 5568899998
Q ss_pred HHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 046194 683 KHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIW 733 (934)
Q Consensus 683 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~ 733 (934)
.+-+...+. -....+..++..+.....-....+.+-.+|+.+....|
T Consensus 161 ~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~~ 207 (226)
T PF13934_consen 161 SFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQW 207 (226)
T ss_pred HHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHHH
Confidence 876665442 11446677777666444323344445556776665443
No 389
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=38.22 E-value=8.9e+02 Score=30.25 Aligned_cols=255 Identities=7% Similarity=-0.062 Sum_probs=139.4
Q ss_pred HHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCC
Q 046194 412 LKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVA 491 (934)
Q Consensus 412 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 491 (934)
..+...+.++|...-..-+..+.+.+. .+++..+.+.... ++...=...+.++...+........+...++.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~--~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~--- 695 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP--PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS--- 695 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc--hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---
Confidence 345555566777666666777766665 4555555555532 23222223444443332211111222222222
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 046194 492 NETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSAC 571 (934)
Q Consensus 492 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 571 (934)
+|..+..+.++.+...+.-+ ...+...+... |...=...+.++.+.+..+. +.... -.++...-.....++
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~-d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL 766 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGD-AALFAAALGDP-DHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGL 766 (897)
T ss_pred CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCC-CHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHH
Confidence 56666666677666543211 22333333333 66555556666666554332 11222 245555555666666
Q ss_pred hchhhHHH-HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH-HHhccCCCCCcccccHHHHHHHHcCChHHHHHH
Q 046194 572 ASVATLER-GMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS-RFFDLMPVRNVYSWNSMISGYARHGHGDKALTL 649 (934)
Q Consensus 572 ~~~~~~~~-a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 649 (934)
...+..+. +...+..+.+ ++|..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. +++...
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 66655432 2233333332 457788888888999988766553 34445556666566667777777765 456677
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 650 FSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 650 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
+-.+.+ .|+...-...+.++........+...+....+
T Consensus 843 L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 777765 56666666677777775444567777766665
No 390
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=38.11 E-value=51 Score=20.26 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=19.7
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 35667777777777777777666655544
No 391
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=37.29 E-value=68 Score=22.37 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=10.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 046194 533 ISGYIHNELLPKAMNLVWFMMQ 554 (934)
Q Consensus 533 i~~~~~~g~~~~A~~l~~~m~~ 554 (934)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3344444444444444444443
No 392
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=37.28 E-value=11 Score=28.60 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=16.4
Q ss_pred cEEEEecCCcccccCCcccCC
Q 046194 910 REIVLRDSNRFHHFNDGKCSC 930 (934)
Q Consensus 910 ~~~~~~d~~~~h~f~~g~csc 930 (934)
..|=+.|.+..|+|||||-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 356688999999999998653
No 393
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.76 E-value=1.7e+02 Score=26.38 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=43.0
Q ss_pred CCChhhHHHHHHHHHhhC---cHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 046194 659 LPDHVTFVGVLSACSHAG---LVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN 729 (934)
Q Consensus 659 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~ 729 (934)
.|...+-..+..++.+.. ++.+++.+++.+.+. -.|+ .+..-.|.-++.|.|++++++.+++.. ..+||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 455555555666665544 566788888888751 2233 344445666788888888888887765 34443
No 394
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.58 E-value=8.9e+02 Score=29.74 Aligned_cols=130 Identities=12% Similarity=0.094 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC--CcHhHHHHHHHH
Q 046194 528 SWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLE--FDVVIGSALVDM 605 (934)
Q Consensus 528 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~ 605 (934)
-|..|+.-|...|+.++|++++.+.....-.-|.. ..+.-..+.+++.+.+-+ +-+..|...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~~~~~~Li~~y~~w--- 569 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLGAENLDLILEYADW--- 569 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhcccchhHHHHHhhh---
Confidence 47889999999999999999999987632111111 011112234444443322 111111111
Q ss_pred HHhcCCHHHHHHHhccCCCCCcccccH-HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046194 606 YSKCGRIDYASRFFDLMPVRNVYSWNS-MISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH 674 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 674 (934)
.-..+.+...++|..-......+.+. -+-.|......+-++..++.+....-.++..-.+.++.-|..
T Consensus 570 -vl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 570 -VLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred -hhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 12345566666666511111122221 344566777888889999998887666677667777766553
No 395
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=36.35 E-value=1.6e+02 Score=25.95 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHH
Q 046194 646 ALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMV 705 (934)
Q Consensus 646 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 705 (934)
..+-++......+-|+......-+.||.+.+++..|.++|+-++.+ ..+....|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 3344455556678899888999999999999999999999988764 444444566555
No 396
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.38 E-value=92 Score=30.93 Aligned_cols=83 Identities=12% Similarity=0.122 Sum_probs=35.3
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCCc-ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQL-EQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~ 749 (934)
|.....++.|+..|.+... +.|+. .-|+.=+-.+.+..+++.+.+--.+. .+.||.+--..+++.+.... ..++
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s-~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS-KGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh-cccc
Confidence 3344445555554443332 44553 22333344444444555444433332 34444443333333333221 3444
Q ss_pred HHHHHHHHH
Q 046194 750 LGRKAANML 758 (934)
Q Consensus 750 ~a~~~~~~~ 758 (934)
.|...++++
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 454444444
No 397
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=35.16 E-value=78 Score=20.93 Aligned_cols=31 Identities=10% Similarity=-0.015 Sum_probs=18.0
Q ss_pred HHHHHHHHHhccCCCcHHHHHH--HHHHHhcCCCC
Q 046194 733 WRTVLGACCRANCRKTELGRKA--ANMLFEMEPQN 765 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~--~~~~~~~~p~~ 765 (934)
|-++...+... |+.+.|+.+ ++-+..++|.|
T Consensus 4 ~y~~a~~~y~~--~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQK--GKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHT--T-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHhcccC
Confidence 44555566666 777777777 44666666543
No 398
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.38 E-value=4.9e+02 Score=27.04 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=21.5
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 046194 513 CEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACAS 573 (934)
Q Consensus 513 A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 573 (934)
|.++|...... -..+.+|+.+.+.+.-+.-+++ .+|+..|.-.+-..+..
T Consensus 186 ~~~lFk~~~~E---k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~ 235 (412)
T KOG2297|consen 186 AVKLFKEWLVE---KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTD 235 (412)
T ss_pred HHHHHHHHHhh---ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhH
Confidence 45555554432 2234455554444433333333 24554444444444333
No 399
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.29 E-value=6.6e+02 Score=27.27 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=55.7
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHh-hcCChHHHHHHHHhCCC--CCC------HHHHHHHH
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLG-RAGELDKIEEFINKMPI--TPN------SLIWRTVL 737 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~-~~g~~~~A~~~~~~m~~--~p~------~~~~~~ll 737 (934)
+..+.+.|-+..|.++.+-+.. +.|+ +..--.+||.|+ +++.++--+++++.... ..+ ...|..-|
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 3456778888888888777754 5554 444555677664 66777777777766422 111 12344444
Q ss_pred HHHHhccCCCc---------------HHHHHHHHHHHhcCCC
Q 046194 738 GACCRANCRKT---------------ELGRKAANMLFEMEPQ 764 (934)
Q Consensus 738 ~~~~~~~~~~~---------------~~a~~~~~~~~~~~p~ 764 (934)
..+.. ++. +.|..+.++++...|.
T Consensus 187 A~~~l---~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYFRL---EKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHh---cCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 44433 343 7888888888888774
No 400
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=32.90 E-value=48 Score=33.85 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=33.6
Q ss_pred hcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHH
Q 046194 710 RAGELDKIEEFINKM-PITPNSL-IWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYV 770 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~ 770 (934)
+.|+.++|..+|+.. .+.|+.. +..-+....-.+ +++-+|.+.+-+++.+.|.|....+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~--~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH--NEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh--hhhHhhhhhhheeeeeCCCchHHHh
Confidence 556666666666654 4444322 222222222233 6777777777777777777765544
No 401
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.49 E-value=5.4e+02 Score=27.10 Aligned_cols=123 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHCCCCC-------------ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHH
Q 046194 641 GHGDKALTLFSQMKLDGPLP-------------DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDL 707 (934)
Q Consensus 641 g~~~~A~~l~~~m~~~g~~p-------------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 707 (934)
++.+....++..+++.++.| |...++++..+ +...+++--+..+...+..|-.--.+.+-....-
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HhhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 046194 708 LGRAGELDKIEEFINKM-------PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGG 780 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 780 (934)
|++-|+.+.|++.+.+. +.+-|......=++.+. +|.+...+..+++..+ +-+.|
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy----~D~~lV~~~iekak~l--------------iE~Gg 175 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFY----LDHDLVTESIEKAKSL--------------IEEGG 175 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh----ccHHHHHHHHHHHHHH--------------HHhCC
Q ss_pred ChH
Q 046194 781 KWE 783 (934)
Q Consensus 781 ~~~ 783 (934)
+|+
T Consensus 176 DWe 178 (393)
T KOG0687|consen 176 DWE 178 (393)
T ss_pred Chh
No 402
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.41 E-value=84 Score=22.35 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=26.5
Q ss_pred HhcCCChhhHHHHHHHHHHcCCCCCcccHHHHHHH
Q 046194 61 YTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRA 95 (934)
Q Consensus 61 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 95 (934)
.-+.|.+.++..++++|.+.|+..+...+..+++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34677777888888888888888777777777654
No 403
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=32.18 E-value=1.1e+02 Score=26.05 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=46.1
Q ss_pred hhhhcccHHHHHHHHhc-CCCCCcEEEEccccccCchhhHHHhHhhhhCcEEEEecCC
Q 046194 862 DLVSYHSEKIAVAFVLT-RNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSN 918 (934)
Q Consensus 862 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~n~~~~~~ch~~~~~~s~~~~~~~~~~d~~ 918 (934)
..|..|.|.-++----. ..+|..+-|.--.+-|+.|.-+|.-.|.-.|-.|+-++.+
T Consensus 45 ~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 45 SSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 35678888877654333 5569998888899999999999999999999999988743
No 404
>PF15469 Sec5: Exocyst complex component Sec5
Probab=31.05 E-value=3.6e+02 Score=25.77 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=16.3
Q ss_pred HHHHHHHhhCcHHHHHHHHHHhHHh
Q 046194 667 GVLSACSHAGLVDEGFKHFKSMSQV 691 (934)
Q Consensus 667 ~ll~a~~~~g~~~~a~~~~~~m~~~ 691 (934)
.-|.-|.+.|+++.+...|......
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 3455566777777777777666654
No 405
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.40 E-value=5.1e+02 Score=25.02 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=53.8
Q ss_pred HHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhc----
Q 046194 414 VFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYN---- 489 (934)
Q Consensus 414 ~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g---- 489 (934)
+.++.+++..+.|-....+-++.-+. +++-+.|-- ..=.+++-.|-+..++..++.++..+.+..
T Consensus 98 Ltkd~Kdk~~vPFceFAetV~k~~q~-~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft 166 (233)
T PF14669_consen 98 LTKDSKDKPGVPFCEFAETVCKDPQN-DEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFT 166 (233)
T ss_pred HHhcccccCCCCHHHHHHHHhcCCcc-chhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444555666666666655444 444333211 112355666667777777777776665432
Q ss_pred ----------CCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 046194 490 ----------VANETTIENALLSCYGKCGEMDDCEKIFAR 519 (934)
Q Consensus 490 ----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 519 (934)
..+.-.+.|.-...+.++|.+|.|..++++
T Consensus 167 ~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 167 SLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 223445566667777777777777777763
No 406
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=30.09 E-value=1.5e+02 Score=21.14 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=20.2
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046194 333 DQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLS 365 (934)
Q Consensus 333 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 365 (934)
.+.|-..++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666666667766666666555555543
No 407
>PF15161 Neuropep_like: Neuropeptide-like
Probab=29.77 E-value=23 Score=25.50 Aligned_cols=18 Identities=33% Similarity=0.707 Sum_probs=12.7
Q ss_pred ccccccCchhhHHHhHhhh
Q 046194 889 KNLRVCGDCHSAFKFISKI 907 (934)
Q Consensus 889 ~n~~~~~~ch~~~~~~s~~ 907 (934)
..-|-|.|||.+- |+.+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 4578899999654 66543
No 408
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=29.55 E-value=2.6e+02 Score=29.16 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=84.9
Q ss_pred hchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCC--ccccc--HHHHHHHHcCChHHHH
Q 046194 572 ASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRN--VYSWN--SMISGYARHGHGDKAL 647 (934)
Q Consensus 572 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~--~li~~~~~~g~~~~A~ 647 (934)
....-+.+|.+++..+.+.+- .+ |.+..+...--...+.+.++| +.+|- .|..+-.+.|+..+|.
T Consensus 227 EEa~Ti~~AE~l~k~ALka~e----~~-------yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 227 EEATTIVDAERLFKQALKAGE----TI-------YRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhhhhHHHHHHHHHHHHHHHH----HH-------HhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHH
Confidence 344566778888888777542 12 222222222122223333343 33332 3444555789999999
Q ss_pred HHHHHHHHCCCCCCh---hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhhcCChHHHHHHHH
Q 046194 648 TLFSQMKLDGPLPDH---VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGRAGELDKIEEFIN 722 (934)
Q Consensus 648 ~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~ 722 (934)
+.|+.+.+. .|-. .....||.+|.....+.+...++-+.-+- .. |. ...|++ ++. ++..+-+
T Consensus 296 K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-sl-PkSA~icYTa---ALL------K~RAVa~ 362 (556)
T KOG3807|consen 296 KIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-SL-PKSAAICYTA---ALL------KTRAVSE 362 (556)
T ss_pred HHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cC-cchHHHHHHH---HHH------HHHHHHh
Confidence 999887764 3321 12345677777766666666655444321 11 22 222322 111 2222323
Q ss_pred hCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 723 KMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 723 ~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
+ +.||..+-..|-.+ -..|.++..++.+.+|.-|.+..-+
T Consensus 363 k--Fspd~asrRGLS~A--------E~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 363 K--FSPETASRRGLSTA--------EINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred h--cCchhhhhccccHH--------HHHHHHHHHHHhhcCCCCcHHHHHH
Confidence 3 35665443322221 1235667778889999876654433
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.11 E-value=2.2e+02 Score=23.42 Aligned_cols=38 Identities=11% Similarity=0.133 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHH
Q 046194 608 KCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKA 646 (934)
Q Consensus 608 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 646 (934)
..|+.+.|.++++.+. +....|...++++...|+.+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4455666666666666 5555556666666655554443
No 410
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=28.93 E-value=3.3e+02 Score=22.41 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=32.8
Q ss_pred ccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHH
Q 046194 303 KCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAI 342 (934)
Q Consensus 303 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 342 (934)
+.|+.+.|+++++.++ +....|..++.++-..|+-+-|-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 5688999999999999 88889999999998888766554
No 411
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.84 E-value=7.1e+02 Score=26.24 Aligned_cols=82 Identities=9% Similarity=-0.016 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHhCC----CCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC-CCcccccHHHHHHHHcCChHHHHHH
Q 046194 575 ATLERGMEVHACGVRACL----EFDVVIGSALVDMYSKCGRIDYASRFFDLMPV-RNVYSWNSMISGYARHGHGDKALTL 649 (934)
Q Consensus 575 ~~~~~a~~i~~~~~~~~~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l 649 (934)
.-.+.+.+.+......+. ..++.....+.....+.|..+.-..+++.... ++......++.+++...+.+...++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 335566666666555311 23444445555555566665444444443332 3344455566666666666666666
Q ss_pred HHHHHHC
Q 046194 650 FSQMKLD 656 (934)
Q Consensus 650 ~~~m~~~ 656 (934)
++.....
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 6666554
No 412
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.72 E-value=4.1e+02 Score=25.66 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=25.9
Q ss_pred HhcCCHHHHHHHhccCCC------CCcccccHHHH-HHHHcCC--hHHHHHHHHHHHHC
Q 046194 607 SKCGRIDYASRFFDLMPV------RNVYSWNSMIS-GYARHGH--GDKALTLFSQMKLD 656 (934)
Q Consensus 607 ~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 656 (934)
...|++++|..-++.+.+ .-...|..+.. +++.++. +-+|..++.-....
T Consensus 40 ~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 40 LHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 445566666666555431 12334555544 5665554 44555555555543
No 413
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.65 E-value=1.5e+02 Score=32.66 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=60.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPDHVTFVGVL-SACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELD 715 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~ 715 (934)
...+.++.|+.++.+.++ +.||...|-..= .++.+.+++..|+.=+....+ ..|+ ...|-.=..++.+.+++.
T Consensus 15 l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred cccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhHHHHH
Confidence 344567777777777777 467654443332 456667777777665555554 2344 333333344445556667
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 046194 716 KIEEFINKM-PITPNSLIWRTVLGACCRA 743 (934)
Q Consensus 716 ~A~~~~~~m-~~~p~~~~~~~ll~~~~~~ 743 (934)
+|+..|+.. .+.|+..-..-.+.-|-..
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 777777665 5677776666666666544
No 414
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=28.65 E-value=1.3e+02 Score=29.24 Aligned_cols=28 Identities=11% Similarity=0.305 Sum_probs=11.5
Q ss_pred CCcccHHHHHHHHhhcCChHHHHHHHHh
Q 046194 696 PQLEQFSCMVDLLGRAGELDKIEEFINK 723 (934)
Q Consensus 696 p~~~~y~~li~~l~~~g~~~~A~~~~~~ 723 (934)
|++..|..++.++...|+.++|.+..++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~ 169 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLAR 169 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444444444444444433333
No 415
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.64 E-value=1.6e+02 Score=30.95 Aligned_cols=90 Identities=7% Similarity=0.057 Sum_probs=65.3
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM-P---ITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLA 773 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m-~---~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~ 773 (934)
+|--=++-|.+..++..|...|.+- . -.|| .+.|+.=..+-... ||+..+..-..+++.++|.+.-.|..=+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l--~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL--GNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3333456678888999999988765 1 2333 34444444444444 8999999999999999999999999989
Q ss_pred HHHHcCCChHHHHHHHHH
Q 046194 774 NMYASGGKWEDVAKARKA 791 (934)
Q Consensus 774 ~~~~~~g~~~~a~~~~~~ 791 (934)
.++....++.+|..+-+.
T Consensus 161 kc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999998887777665443
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=28.59 E-value=72 Score=32.99 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=31.6
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVL 669 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 669 (934)
-||..|..-.+.|++++|+.+++|.++.|+.--..||..-+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46678888888888999999999998888766566665443
No 417
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.58 E-value=6.6e+02 Score=25.77 Aligned_cols=107 Identities=12% Similarity=0.002 Sum_probs=52.4
Q ss_pred ccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHH----HHHHCCCCCChhhHHHHHHHhhccC-----ch
Q 046194 303 KCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFC----AMRRDGLMSSNFSLISTLSSCASLG-----WI 373 (934)
Q Consensus 303 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~t~~~ll~a~~~~~-----~~ 373 (934)
+.+++++|.+++.. =...+.++|+...|-++-. -..+.+..+|......++..+...+ ..
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45566777766532 1223445555544444332 2333455666555444444433222 12
Q ss_pred HHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 046194 374 MLGQQIHGEGLKLG--LDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEH 421 (934)
Q Consensus 374 ~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 421 (934)
+........- +.| ..-|+.....+...|.+.|++.+|+.-|-.-..+
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~ 119 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP 119 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 2222333333 222 3357788999999999999999999887654433
No 418
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=28.49 E-value=9e+02 Score=27.31 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=9.1
Q ss_pred hcccHHHHHHHHhc
Q 046194 865 SYHSEKIAVAFVLT 878 (934)
Q Consensus 865 ~~~~~~~~~~~~~~ 878 (934)
+.|-|+|+.-|+.-
T Consensus 429 ~sl~ekl~~kfk~s 442 (711)
T COG1747 429 VSLEEKLAVKFKAS 442 (711)
T ss_pred cChHHHHHHHhhcc
Confidence 45667777776654
No 419
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=28.35 E-value=2.5e+02 Score=24.12 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=42.3
Q ss_pred HHHhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHH
Q 046194 130 IAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSL 200 (934)
Q Consensus 130 i~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~l 200 (934)
+..+.+. |+++.|...=.....||...|-++-. .+.|-.+++...+.++-.+| .|....|..=
T Consensus 47 ~~sLmNr-G~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g-----~~~~q~Fa~~ 109 (116)
T PF09477_consen 47 LSSLMNR-GDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG-----SPELQAFAAG 109 (116)
T ss_dssp HHHHHHT-T-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S-----SHHHHHHHHH
T ss_pred HHHHHhh-HHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-----CHHHHHHHHH
Confidence 3334444 99999966666677899999987765 47888899999999898877 5665555443
No 420
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.16 E-value=5.5e+02 Score=30.99 Aligned_cols=171 Identities=11% Similarity=0.049 Sum_probs=104.0
Q ss_pred hcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCC-------chhHHHHHHHHhhccCChhHHHHHHh
Q 046194 243 RLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFD-------MVAVGNGLVNMYAKCGTIDDSRSVFR 315 (934)
Q Consensus 243 ~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~-------~~~~~~~li~~~~~~g~~~~A~~~f~ 315 (934)
-+.++++.+.+.+.-.- -|+.+.+++.+.|.+. |.. .-......||+++.|++.-.
T Consensus 605 i~k~ydeVl~lI~ns~L--------------vGqaiIaYLqKkgypeiAL~FVkD~~---tRF~LaLe~gnle~ale~ak 667 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNL--------------VGQAIIAYLQKKGYPEIALHFVKDER---TRFELALECGNLEVALEAAK 667 (1202)
T ss_pred HhhhhHHHHHHHHhcCc--------------ccHHHHHHHHhcCCcceeeeeecCcc---hheeeehhcCCHHHHHHHHH
Confidence 34566777766665322 2888999999998642 222 22356678999999999887
Q ss_pred cCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHH
Q 046194 316 FMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVS 395 (934)
Q Consensus 316 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 395 (934)
.+.+ ...|..|.....++|+.+-|...|++.+.- ..+--.+.-.|+.+.-..+...+..+ .|....
T Consensus 668 kldd--~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~iae~r---~D~~~~ 733 (1202)
T KOG0292|consen 668 KLDD--KDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSKMMKIAEIR---NDATGQ 733 (1202)
T ss_pred hcCc--HHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHHHHHHHHhh---hhhHHH
Confidence 7654 457999999999999999999999887652 11111233456666655554444322 121111
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHc
Q 046194 396 NALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRA 453 (934)
Q Consensus 396 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~ 453 (934)
-...+| .|++++-.+++..-...+..-.++ ..+|.- ++|.++.++....
T Consensus 734 -~qnalY--l~dv~ervkIl~n~g~~~laylta-----~~~G~~-~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 734 -FQNALY--LGDVKERVKILENGGQLPLAYLTA-----AAHGLE-DQAEKLGEELEKQ 782 (1202)
T ss_pred -HHHHHH--hccHHHHHHHHHhcCcccHHHHHH-----hhcCcH-HHHHHHHHhhccc
Confidence 111112 466776666666655433222222 234555 7888888877654
No 421
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.06 E-value=8.2e+02 Score=26.72 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCCC-----C-CcccccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 598 IGSALVDMYSKCGRIDYASRFFDLMPV-----R-NVYSWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 598 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
.+.-+.+-|..||+++.|.+.+.+... + -+..|-.+|..-.-.|+|......-.+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 445678889999999999999988552 1 122455556555566777776666666655
No 422
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.05 E-value=1.1e+03 Score=29.62 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=12.8
Q ss_pred HHHhcCCHHHHHHHhccCC
Q 046194 605 MYSKCGRIDYASRFFDLMP 623 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~ 623 (934)
+|..+|...+|...|.+..
T Consensus 929 ~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred eeecCCchHHHHHHHHHHh
Confidence 4667777777777776543
No 423
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.99 E-value=3.3e+02 Score=27.07 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=26.5
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHH----HHHhhcCChHHHHHHHHh
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMV----DLLGRAGELDKIEEFINK 723 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li----~~l~~~g~~~~A~~~~~~ 723 (934)
|......|++++|++...+...+ -+.-|.+.+-.|. -=+.|.|..++|+++.+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33445566666666655554332 2222322222111 124567777777777765
No 424
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=27.94 E-value=7e+02 Score=25.85 Aligned_cols=53 Identities=9% Similarity=-0.062 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHhhccCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCC
Q 046194 508 GEMDDCEKIFARMSERRDEVSWNSMISGYIH----NELLPKAMNLVWFMMQRGQRLD 560 (934)
Q Consensus 508 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~ 560 (934)
.+...|.+.|...-+..+......|-..|.. ..+..+|..+|.+....|..+.
T Consensus 91 ~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a 147 (292)
T COG0790 91 RDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA 147 (292)
T ss_pred ccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH
Confidence 3456667777655554333344444444443 3367778888877777775554
No 425
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=27.90 E-value=3.8e+02 Score=27.53 Aligned_cols=88 Identities=10% Similarity=-0.030 Sum_probs=47.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHh---
Q 046194 328 MISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYAD--- 404 (934)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~--- 404 (934)
=|.+++..+++.+++...-+--..--+......-..|-.+++.+.+....++-+.-++..-.-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 35677777777777665444332211112222333333456666666666666655554333333446666666544
Q ss_pred --cCChHHHHHHH
Q 046194 405 --AGYLSRCLKVF 415 (934)
Q Consensus 405 --~g~~~~A~~~f 415 (934)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 47777777766
No 426
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=27.77 E-value=7.1e+02 Score=25.88 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=23.4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCCccchHHHHHHHHhCCcc
Q 046194 390 SDVSVSNALLSLYADAGYLSRCLKVFFLMP-----EHDQVSWNSVIGAFADSEAL 439 (934)
Q Consensus 390 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~ 439 (934)
++..+....+..+++.+++..-.++.+... ..|...|..+|....+.|+.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~ 254 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ 254 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH
Confidence 333444444444444444444444443322 13445555555555555554
No 427
>PRK10941 hypothetical protein; Provisional
Probab=26.79 E-value=3.6e+02 Score=27.86 Aligned_cols=74 Identities=9% Similarity=0.023 Sum_probs=40.6
Q ss_pred HHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHH----HhCCCCCCHHHHHHHHHHHH
Q 046194 667 GVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFI----NKMPITPNSLIWRTVLGACC 741 (934)
Q Consensus 667 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~----~~m~~~p~~~~~~~ll~~~~ 741 (934)
.+-.++.+.++++.|+.+.+.+.. +.|+ +.-+.--.-+|.+.|.+..|..-+ +..|-.|+.......+....
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 344456666666666666666654 3444 333444445566666666665432 33355566666666655554
Q ss_pred hc
Q 046194 742 RA 743 (934)
Q Consensus 742 ~~ 743 (934)
..
T Consensus 263 ~~ 264 (269)
T PRK10941 263 QK 264 (269)
T ss_pred hc
Confidence 43
No 428
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=26.47 E-value=80 Score=28.22 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=24.9
Q ss_pred CCChhhHHHHHHHHHHcCCCCCcccHHHHHHHh
Q 046194 64 KGMSNEACKMFKEMVRAGFLLNRYALGSVLRAC 96 (934)
Q Consensus 64 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 96 (934)
.|.-.+|-.+|++|+.+|-+|| .++.||..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4566678889999999999988 477777765
No 429
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=26.31 E-value=40 Score=18.80 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=8.2
Q ss_pred CchhhHHHhHhh
Q 046194 895 GDCHSAFKFISK 906 (934)
Q Consensus 895 ~~ch~~~~~~s~ 906 (934)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 356788888763
No 430
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.18 E-value=5.2e+02 Score=29.94 Aligned_cols=47 Identities=13% Similarity=-0.036 Sum_probs=24.4
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhc--CCCchhHHHHHHHHHHhcCCH
Q 046194 464 NILAAASSFSMGKLGHQVHAQVIKYN--VANETTIENALLSCYGKCGEM 510 (934)
Q Consensus 464 ~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~ 510 (934)
+++.||...|++..+.+++....... -..-...+|..|.-+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56666666666666666666554322 222223344444555555543
No 431
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.06 E-value=89 Score=30.78 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 704 MVDLLGRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 704 li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
+..++.+.|+.+-|.+++.+. ........|--+...--+. |+.+.|.+++++.++++|+|
T Consensus 1 ~a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~eka--g~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 1 YAYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKA--GEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred CcchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhc--ccHHHHHHHHHHHHcCCccc
No 432
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=25.90 E-value=4.1e+02 Score=23.65 Aligned_cols=42 Identities=7% Similarity=0.051 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHH
Q 046194 645 KALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFK 686 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 686 (934)
.+.++|..|..+|+--. +.-|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666666666555444 2334444444555566666666554
No 433
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.86 E-value=4.2e+02 Score=25.56 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=12.8
Q ss_pred HHcCCChHHHHHHHHHHH
Q 046194 776 YASGGKWEDVAKARKAMK 793 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~ 793 (934)
..+.|++++|.+.++-|.
T Consensus 131 ~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 131 LLRKGSFEEAERFLKFME 148 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 345677888888777775
No 434
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=25.52 E-value=1.6e+02 Score=28.46 Aligned_cols=37 Identities=14% Similarity=0.070 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCC
Q 046194 725 PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEP 763 (934)
Q Consensus 725 ~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p 763 (934)
...|++.++..++.++... |+.++|++..+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~--G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALL--GDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC
Confidence 5678999999988888888 999999999999999988
No 435
>PRK09169 hypothetical protein; Validated
Probab=25.24 E-value=2e+03 Score=30.16 Aligned_cols=503 Identities=11% Similarity=-0.008 Sum_probs=272.6
Q ss_pred ccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHH
Q 046194 231 LYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDS 310 (934)
Q Consensus 231 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 310 (934)
...+..+.+.++|.-+.....+.+..+.. ..++ ...-..+...+..+++.++|..+-+.+
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~----------------q~~~----~~~~~l~~~~v~~lLNalSKWP~~~~c 181 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAG----------------QLLD----ALREALDAISFALLLNALSKWPDNTDC 181 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHH----------------HHHH----HHHhhhhhHHHHHHHHHhccCCCchHH
Confidence 34455566666666665555555544431 1111 111123455667888888888776554
Q ss_pred HHHHhcC----CC-------CCcccHHHHHHHHHhCCChhHHHHHHHH----HHHCC---CCCChhhHHHHHHHhhccCc
Q 046194 311 RSVFRFM----IG-------KDSVSWNTMISGLDQNGCYEEAIMNFCA----MRRDG---LMSSNFSLISTLSSCASLGW 372 (934)
Q Consensus 311 ~~~f~~~----~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g---~~p~~~t~~~ll~a~~~~~~ 372 (934)
...-..+ .. -|......++.++++.-+.......-.. +...+ -..+......+|+++++-.+
T Consensus 182 ~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~ 261 (2316)
T PRK09169 182 QTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPD 261 (2316)
T ss_pred HHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCC
Confidence 4443332 11 1444556667777776655443333322 22211 13456678889999998776
Q ss_pred hHHHHHHHHHHhh---h--C--CCCchhHHHHHHHHHHhcCChHHHHHHHh----hC----C---CCCccchHHHHHHHH
Q 046194 373 IMLGQQIHGEGLK---L--G--LDSDVSVSNALLSLYADAGYLSRCLKVFF----LM----P---EHDQVSWNSVIGAFA 434 (934)
Q Consensus 373 ~~~a~~i~~~~~~---~--g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~~----~---~~~~~~~~~li~~~~ 434 (934)
-+..++.-..+-. . + ...|..-....+++++|-.+-+.+...-. ++ . .-|..-....+.+++
T Consensus 262 ~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALS 341 (2316)
T PRK09169 262 DEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALS 341 (2316)
T ss_pred ChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHh
Confidence 6554433332221 1 1 12455566667788888765543322221 11 1 113333445566777
Q ss_pred hCCccHHHH----HHHHHHHHHcC---CCCCcccHHHHHHHHhccCCchHHHH----HHHHHHHh-c--CCCchhHHHHH
Q 046194 435 DSEALVSEA----VKYYLDMRRAG---WSPNGVTFINILAAASSFSMGKLGHQ----VHAQVIKY-N--VANETTIENAL 500 (934)
Q Consensus 435 ~~g~~~~~A----~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~~~~~~a~~----i~~~~~~~-g--~~~~~~~~~~l 500 (934)
+-.+. +.+ ..+-..+.... -..+..-+...++++++..+-+.... +...+... + -..+..-....
T Consensus 342 KWp~~-~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANa 420 (2316)
T PRK09169 342 KWPDE-EACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANA 420 (2316)
T ss_pred cCCCc-HHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHH
Confidence 76654 432 23333333211 24456678889999999877654333 33333221 1 12456666777
Q ss_pred HHHHHhcCCHHHHHHHHHhh----ccC------CCcchHHHHHHHHHhcCChhH----HHHHHHHHHHc---CCCCCHhH
Q 046194 501 LSCYGKCGEMDDCEKIFARM----SER------RDEVSWNSMISGYIHNELLPK----AMNLVWFMMQR---GQRLDHFT 563 (934)
Q Consensus 501 i~~~~~~g~~~~A~~~~~~~----~~~------p~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~---g~~p~~~t 563 (934)
+.+++|-+.-+.+......+ ... -+..-....+.++.+-++.+. +..+...+... .-..+..-
T Consensus 421 LnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~ 500 (2316)
T PRK09169 421 LNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQG 500 (2316)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHH
Confidence 88888877655443333322 221 145556677778877665432 33344444221 12345677
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHH----HHh---CCCCcHhHHHHHHHHHHhcCCHHH----HHHHhccCC-------CC
Q 046194 564 FATVLSACASVATLERGMEVHACG----VRA---CLEFDVVIGSALVDMYSKCGRIDY----ASRFFDLMP-------VR 625 (934)
Q Consensus 564 ~~~ll~a~~~~~~~~~a~~i~~~~----~~~---~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~-------~~ 625 (934)
+..++.++++-+..+.....-..+ ... --..+..-....+.+++|-.+.+. |..+...+. .-
T Consensus 501 lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~ 580 (2316)
T PRK09169 501 LANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSAL 580 (2316)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhcc
Confidence 888999999888766554432222 211 112355566677888888776432 333444332 22
Q ss_pred CcccccHHHHHHHHcCCh----HHHHHHHHHHHHCCC---CCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCC----
Q 046194 626 NVYSWNSMISGYARHGHG----DKALTLFSQMKLDGP---LPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGL---- 694 (934)
Q Consensus 626 ~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~---- 694 (934)
|...+...+.++.+-++. +.+..+...+.+..- .-|..-+.+++.++++-...+........+.....-
T Consensus 581 naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l 660 (2316)
T PRK09169 581 NAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGL 660 (2316)
T ss_pred CHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchh
Confidence 445666788888887764 234455555544211 124556888899999988777666554444432111
Q ss_pred --CCCcccHHHHHHHHhhcCChHHHHHHH----HhCCC------CCCHHHHHHHHHHHHhccCCCcHHHHHHHH
Q 046194 695 --IPQLEQFSCMVDLLGRAGELDKIEEFI----NKMPI------TPNSLIWRTVLGACCRANCRKTELGRKAAN 756 (934)
Q Consensus 695 --~p~~~~y~~li~~l~~~g~~~~A~~~~----~~m~~------~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 756 (934)
.-+..+...++.++++..+.+.+.+.. ..+.. .-|..-....++++.+- -+-+.++.+.+
T Consensus 661 ~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKw--p~~~acr~A~~ 732 (2316)
T PRK09169 661 PRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKW--PEEEACRAAAE 732 (2316)
T ss_pred HHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhc--cCccHHHHHHH
Confidence 234677888899999998866543332 22211 22556667777887766 44444444433
No 436
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=25.13 E-value=4.5e+02 Score=30.40 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=16.7
Q ss_pred CCCCcccHHHHHHHHhccCCchHHHHHHHHHH
Q 046194 455 WSPNGVTFINILAAASSFSMGKLGHQVHAQVI 486 (934)
Q Consensus 455 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 486 (934)
+.-|..||..++.+..+..+-..+.-++...+
T Consensus 99 ln~d~~t~all~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 99 LNGDSLTYALLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred cCCcchHHHHHHHhhcChHhHHhccHHHHHHH
Confidence 44566666666665555444444444444433
No 437
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.06 E-value=1.3e+02 Score=22.87 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=17.9
Q ss_pred ChhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 661 DHVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 661 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
|-.-...+|.++...|++++|.++.+.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333445566667777777777776666654
No 438
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=25.04 E-value=1e+02 Score=31.86 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=32.3
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 046194 324 SWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLIST 363 (934)
Q Consensus 324 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 363 (934)
-||..|..-++.|+.++|+.++++..+.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4789999999999999999999999998876555555433
No 439
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.79 E-value=4.2e+02 Score=25.39 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHH
Q 046194 499 ALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMIS 534 (934)
Q Consensus 499 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~ 534 (934)
..+-.|.+.|.+++|.+++++....|+......-+.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~ 151 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLL 151 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHH
Confidence 456678899999999999998877655554433333
No 440
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.77 E-value=7.2e+02 Score=24.95 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=8.0
Q ss_pred cCChHHHHHHHHHHHH
Q 046194 640 HGHGDKALTLFSQMKL 655 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~ 655 (934)
.+++.+|+.+|++...
T Consensus 167 leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555444
No 441
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.33 E-value=7.3e+02 Score=29.34 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=48.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCH---hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 046194 536 YIHNELLPKAMNLVWFMMQRGQRLDH---FTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRI 612 (934)
Q Consensus 536 ~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 612 (934)
|...+..+.|.++|++..+ +.|+. +-+.+++.+-.+. ++...++ .. +...|-..+++.|.+
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~--Fens~El----q~--------IgmkLn~LlgrKG~l 360 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH--FENSLEL----QQ--------IGMKLNSLLGRKGAL 360 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh--ccchHHH----HH--------HHHHHHHHhhccchH
Confidence 4445556677777777655 45544 3344444432211 1111111 11 111233345777777
Q ss_pred HHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHC
Q 046194 613 DYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLD 656 (934)
Q Consensus 613 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 656 (934)
+.-...++-. + ...+-.-.+++.+|++.-+.|.+.
T Consensus 361 eklq~YWdV~------~---y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 361 EKLQEYWDVA------T---YFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred HHHHHHHhHH------H---hhhhhhhccCHHHHHHHHHHHhcc
Confidence 7766666432 1 223334456777888877777773
No 442
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.22 E-value=2e+02 Score=23.52 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=33.7
Q ss_pred HhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHH
Q 046194 300 MYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEA 341 (934)
Q Consensus 300 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 341 (934)
..+...+.+.|.++++.++.++..+|.++..++-..|...-|
T Consensus 39 I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 39 IQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 334556788899999999999999999999999888765544
No 443
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.06 E-value=4.7e+02 Score=27.38 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=33.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046194 500 LLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQ 554 (934)
Q Consensus 500 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 554 (934)
++..+.+..++....+.+..+. ....-...+......|++..|+++..+...
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~---~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK---TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4455555555555555555553 334445567777788899999888887765
No 444
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=24.00 E-value=1.1e+03 Score=26.72 Aligned_cols=159 Identities=19% Similarity=0.182 Sum_probs=87.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
|....-+++..+.++-.+.-...+-.+|..- .-+...|..+++.|... ..++-..+++.+++..+. |+....-|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 4444555666666666666666666666653 24555666666666655 445555666666665544 5555566777
Q ss_pred HHHhcCCHHHHHHHhccCCCC------Cc---ccccHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHh
Q 046194 605 MYSKCGRIDYASRFFDLMPVR------NV---YSWNSMISGYARHGHGDKALTLFSQMKLD-GPLPDHVTFVGVLSACSH 674 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~ 674 (934)
.|-+ ++.+.+...|..+..+ +. ..|..++..- ..+.+..+.+..+.... |..--.+.+--+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 6666 6666776666654311 11 1344443311 23445555555555432 222233444444455666
Q ss_pred hCcHHHHHHHHHHhHH
Q 046194 675 AGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 675 ~g~~~~a~~~~~~m~~ 690 (934)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7777777777776665
No 445
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=23.37 E-value=3e+02 Score=30.42 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=28.6
Q ss_pred CCCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 725 PITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 725 ~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
++.|. ..++.+-+..+.++ +|+..|..++++++++.|..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~--KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKL--KNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCT--TBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHcCCCH
Confidence 56664 34677888888889 99999999999999999864
No 446
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=23.35 E-value=6.8e+02 Score=24.18 Aligned_cols=97 Identities=9% Similarity=0.014 Sum_probs=57.2
Q ss_pred HHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCC--
Q 046194 515 KIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACL-- 592 (934)
Q Consensus 515 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-- 592 (934)
.+.++.+++ -.+.|.....+-++.-..+++-+.|-- ..=.+++-.|.+.-.+.+++++++.+.+..+
T Consensus 97 ~Ltkd~Kdk-~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~f 165 (233)
T PF14669_consen 97 ALTKDSKDK-PGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHF 165 (233)
T ss_pred HHHhccccc-CCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444444 444555555555555455554433311 1123455567777788888888777655322
Q ss_pred ------------CCcHhHHHHHHHHHHhcCCHHHHHHHhccC
Q 046194 593 ------------EFDVVIGSALVDMYSKCGRIDYASRFFDLM 622 (934)
Q Consensus 593 ------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 622 (934)
.+--.+.|.-...+.++|.+|.|..++++-
T Consensus 166 t~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 166 TSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred hhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 233455677777888888888888888753
No 447
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=23.21 E-value=4.2e+02 Score=27.18 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=47.0
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 734 RTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 734 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
..+=.++... ++++.|.++.++++.++|.++.-.---+-+|...|-..-|.+-.+..
T Consensus 185 ~~lk~~~~~e--~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 185 RNLKAALLRE--LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHHHHHh--hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 3344455566 89999999999999999999988888899999999999888776653
No 448
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.18 E-value=2.1e+02 Score=23.82 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHHHHhcCCCCC---------chHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 746 RKTELGRKAANMLFEMEPQNA---------VNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~---------~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
||+..|...+.+.++...... .....++.++...|++++|.+.+++..+
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566666666655555432211 2345678889999999999988776653
No 449
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.15 E-value=7.6e+02 Score=26.93 Aligned_cols=27 Identities=4% Similarity=-0.385 Sum_probs=16.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh
Q 046194 636 GYARHGHGDKALTLFSQMKLDGPLPDH 662 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~~p~~ 662 (934)
.+.+.+++..|.++|+++.+...+|+.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhh
Confidence 444566666666766666665444443
No 450
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.12 E-value=5.3e+02 Score=27.00 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=34.2
Q ss_pred HHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046194 296 GLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRR 350 (934)
Q Consensus 296 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (934)
.++..+.+...+.+....+..+ +.+..-...+..+...|++..|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445555555555555544444 2334445677788899999999999988766
No 451
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=23.09 E-value=1.2e+02 Score=22.97 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=15.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 046194 632 SMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 632 ~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
..|.||.+.|++++|.+..+++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456677777777777777666654
No 452
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=22.67 E-value=9.6e+02 Score=25.64 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=48.9
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchH
Q 046194 398 LLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKL 477 (934)
Q Consensus 398 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 477 (934)
+.+.++|.++.+.+..+-+.++.-......++..++-...-...-+..+++..... ||..+...++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 44555555555555555444444333334444444433333312233333444333 788888888888887776666
Q ss_pred HHHHHHHHHHhcCCCc
Q 046194 478 GHQVHAQVIKYNVANE 493 (934)
Q Consensus 478 a~~i~~~~~~~g~~~~ 493 (934)
....+..+.......+
T Consensus 249 ~~~~i~~~L~~~~~~~ 264 (340)
T PF12069_consen 249 VAILIDALLQSPRLCH 264 (340)
T ss_pred HHHHHHHHhcCcccCC
Confidence 6665555555443333
No 453
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.61 E-value=4.4e+02 Score=21.65 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC
Q 046194 582 EVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP 623 (934)
Q Consensus 582 ~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 623 (934)
++|+.....|+..|+.+|..+++...-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777888888888888877776666666667766664
No 454
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.58 E-value=2.4e+02 Score=23.05 Aligned_cols=45 Identities=11% Similarity=-0.005 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhh
Q 046194 215 LQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQ 259 (934)
Q Consensus 215 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 259 (934)
-.++++.....|+..|..+|..++....-+=-++...++++.|..
T Consensus 27 E~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 27 EVELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 348999999999999999999999999999999999999999964
No 455
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=22.50 E-value=2.9e+02 Score=23.70 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh
Q 046194 498 NALLSCYGKCGEMDDCEKIFARM 520 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~ 520 (934)
..++.-|...|+.++|..-+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34455555566666666666664
No 456
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=21.95 E-value=4.2e+02 Score=28.01 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhccC------CCcchH--HHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCH
Q 046194 495 TIENALLSCYGKCGEMDDCEKIFARMSER------RDEVSW--NSMISGYIHNELLPKAMNLVWFMMQ-----RGQRLDH 561 (934)
Q Consensus 495 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~ 561 (934)
.....++...-++++.++|.+.++++.++ |+.+.| ..+...+...|+..++.+++.+..+ .++.|+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred hHHHHHHHH
Q 046194 562 FTFATVLSA 570 (934)
Q Consensus 562 ~t~~~ll~a 570 (934)
.+--..+++
T Consensus 156 h~~fY~lss 164 (380)
T KOG2908|consen 156 HSSFYSLSS 164 (380)
T ss_pred hhhHHHHHH
No 457
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=21.92 E-value=2.1e+02 Score=23.40 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=40.6
Q ss_pred hHHHHHHHHhcCCCCchhhhHHHHHHhhcCChhhHHHhhccCCCCChhhHHHHHHHHhcCCChhh
Q 046194 5 KLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMSNE 69 (934)
Q Consensus 5 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~ 69 (934)
..++..+++.|+ ++....=...+...+.+.|.++++-+|.+...+|.....++-..|...-
T Consensus 19 ~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 19 KYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 345666666663 3333333444555667888888888888888888888888877765543
No 458
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=21.76 E-value=7.6e+02 Score=24.11 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=13.1
Q ss_pred cHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 631 NSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 631 ~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
+.++..+...|+++.|-+.|.-+..
T Consensus 45 ~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 45 TDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHc
Confidence 3444555555555555555555554
No 459
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=21.55 E-value=1.4e+03 Score=28.36 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKMPITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~ 742 (934)
-.+.+.++.+.+. .+....++...+++.-.|- ..-|-.+...-...+-++...++.+.-.+.+ ++--..+|++++..
T Consensus 707 ~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~ 785 (863)
T TIGR02414 707 RLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSPRPDTLERVKALLQHPAFDLKNPNRVRALIGAFAN 785 (863)
T ss_pred HHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHh
Confidence 3344555554333 2333444444444333444 2233333322222333334444433322222 33456788888864
Q ss_pred ccC-----CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH
Q 046194 743 ANC-----RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAK 787 (934)
Q Consensus 743 ~~~-----~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 787 (934)
.+. .+-+--.-+.+.++++++-||..-..|...+.+=.++++..+
T Consensus 786 ~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~~~r~ 835 (863)
T TIGR02414 786 NNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLDPKRQ 835 (863)
T ss_pred cCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCCHHHH
Confidence 311 122223457788999999999999999999999888887755
No 460
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=21.39 E-value=1.1e+03 Score=25.82 Aligned_cols=20 Identities=5% Similarity=-0.150 Sum_probs=12.4
Q ss_pred HHHhcCCHHHHHHHhccCCC
Q 046194 605 MYSKCGRIDYASRFFDLMPV 624 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~ 624 (934)
.+.+.+++..|.++|+++..
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~ 158 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLR 158 (380)
T ss_pred HHHHhcChHHHHHHHHHHHh
Confidence 44556666666666666653
No 461
>PRK11619 lytic murein transglycosylase; Provisional
Probab=21.26 E-value=1.4e+03 Score=27.12 Aligned_cols=95 Identities=11% Similarity=-0.081 Sum_probs=53.4
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC---CCCCchHHHHHHHHHcCCC
Q 046194 705 VDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEME---PQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~y~~l~~~~~~~g~ 781 (934)
+..+...|+..+|...+..+....+......+....... |..+.+..+.......+ -.-|..|.....-++..-.
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~--g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~ 491 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQ--QWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKG 491 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcC
Confidence 456677788888888877663234444555555555556 88888887776543321 1123445555555555555
Q ss_pred hHHHHHHHHHHHhCCCcCCC
Q 046194 782 WEDVAKARKAMKEAEVKKEA 801 (934)
Q Consensus 782 ~~~a~~~~~~m~~~~~~~~~ 801 (934)
.+.+.-.--...|.++.+..
T Consensus 492 v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 492 IPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred CCHHHHHHHHHHhcCCCCCC
Confidence 55544222222355555543
No 462
>PHA02874 ankyrin repeat protein; Provisional
Probab=21.08 E-value=1.1e+03 Score=26.07 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=9.8
Q ss_pred HhhhCCCChHHHHHHhhc
Q 046194 132 MYGSCLESTDCARRIFEE 149 (934)
Q Consensus 132 ~y~~~~g~~~~a~~~f~~ 149 (934)
..... |+++..+.+++.
T Consensus 7 ~ai~~-gd~~~v~~ll~~ 23 (434)
T PHA02874 7 MCIYS-GDIEAIEKIIKN 23 (434)
T ss_pred HHHhc-CCHHHHHHHHHc
Confidence 34444 666666666653
No 463
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.04 E-value=7.8e+02 Score=23.96 Aligned_cols=56 Identities=11% Similarity=0.008 Sum_probs=28.6
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCccc--ccHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046194 602 LVDMYSKCGRIDYASRFFDLMPVRNVYS--WNSMISGYARHGHGDKALTLFSQMKLDG 657 (934)
Q Consensus 602 li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g 657 (934)
|.......|..|+|...++....++-.+ -..--..+...|+-++|..-|++..+.+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3444455566666666666554433222 1112234555666666666666665543
No 464
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=20.96 E-value=1.7e+02 Score=30.12 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=39.6
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKA 791 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 791 (934)
|+.|.|.+.++.++.+.|.++....-++...-...+.-+|...+-+
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 9999999999999999999999998888887777777777766543
No 465
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=20.66 E-value=1.4e+03 Score=26.71 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=31.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVR 589 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 589 (934)
+...|..-+.-+...++.. ....+++...-.-.+.....-++..|.+.|..+.+..+...+-.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344555554444333222 44444444433334556666777778877777777777665433
No 466
>PRK14015 pepN aminopeptidase N; Provisional
Probab=20.41 E-value=1.6e+03 Score=28.00 Aligned_cols=123 Identities=16% Similarity=0.158 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKMPITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~ 742 (934)
-.+.+.++.+.+. ++....++...+++.-.|- ..-|-.+...-.+.+-++...++.+.-.+.+ ++--..+|++++..
T Consensus 717 ~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~ 795 (875)
T PRK14015 717 RLAALSALVNADL-PERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAA 795 (875)
T ss_pred HHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhh
Confidence 3344555554433 2334444444443333444 2333333332223333444444443322222 33456788888854
Q ss_pred ccC-----CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH
Q 046194 743 ANC-----RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 743 ~~~-----~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
.+. .+-.--.-+.+.++++++-||..-..|...+.+-.++++..+.
T Consensus 796 ~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~ 846 (875)
T PRK14015 796 ANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQA 846 (875)
T ss_pred cCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHH
Confidence 310 1222334577889999999999999999999998888877553
No 467
>PRK13342 recombination factor protein RarA; Reviewed
Probab=20.31 E-value=1.2e+03 Score=25.85 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=35.0
Q ss_pred chHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchh
Q 046194 527 VSWNSMISGYIH---NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVA 575 (934)
Q Consensus 527 ~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 575 (934)
..+..+++++.+ ..+.+.|+.++..|...|..|....-..++.++...|
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 345555655554 5789999999999999998888766666665554443
Done!