Query 046194
Match_columns 934
No_of_seqs 785 out of 5047
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 16:44:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.3E-39 1.8E-43 379.5 38.7 481 300-794 62-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-38 4.7E-43 375.9 40.1 501 132-778 62-596 (597)
3 4g26_A Pentatricopeptide repea 99.9 2.4E-26 8.3E-31 259.1 19.0 198 513-711 9-223 (501)
4 4g26_A Pentatricopeptide repea 99.9 1.4E-25 4.7E-30 252.9 19.5 214 341-577 9-226 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.7E-22 5.9E-27 223.9 37.4 370 366-781 8-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 8.4E-22 2.9E-26 218.4 38.8 350 431-794 7-367 (388)
7 1xi4_A Clathrin heavy chain; a 99.9 1.2E-16 4.2E-21 189.0 63.1 380 360-788 988-1377(1630)
8 2gw1_A Mitochondrial precursor 99.9 3.2E-20 1.1E-24 214.1 31.0 439 324-772 8-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 6.8E-20 2.3E-24 207.5 28.8 316 425-774 28-371 (450)
10 2gw1_A Mitochondrial precursor 99.9 8.3E-20 2.8E-24 210.6 29.6 424 360-794 9-477 (514)
11 1xi4_A Clathrin heavy chain; a 99.8 2.3E-15 7.7E-20 178.4 62.1 689 24-788 486-1338(1630)
12 3fp2_A TPR repeat-containing p 99.8 8.7E-18 3E-22 194.9 34.8 426 325-767 28-497 (537)
13 2y4t_A DNAJ homolog subfamily 99.8 3.9E-18 1.3E-22 192.9 31.0 293 494-794 26-357 (450)
14 3fp2_A TPR repeat-containing p 99.8 1.4E-17 4.9E-22 193.0 31.8 433 231-729 25-494 (537)
15 3ieg_A DNAJ homolog subfamily 99.8 3.1E-16 1E-20 171.1 32.4 321 463-841 7-355 (359)
16 3ieg_A DNAJ homolog subfamily 99.7 1.7E-15 5.8E-20 165.1 29.3 322 423-778 3-352 (359)
17 1b89_A Protein (clathrin heavy 99.7 1.2E-15 4E-20 163.3 26.6 344 302-725 14-370 (449)
18 3hym_B Cell division cycle pro 99.7 1.3E-15 4.4E-20 164.0 27.0 286 491-782 19-321 (330)
19 1b89_A Protein (clathrin heavy 99.7 5.9E-16 2E-20 165.5 20.8 349 404-793 15-383 (449)
20 1fch_A Peroxisomal targeting s 99.7 3.8E-15 1.3E-19 163.2 24.4 278 504-790 35-354 (368)
21 3hym_B Cell division cycle pro 99.7 1E-14 3.5E-19 156.9 26.2 262 525-793 21-297 (330)
22 2xm6_A Protein corresponding t 99.6 1.7E-13 5.9E-18 156.3 34.4 352 405-778 56-452 (490)
23 4eqf_A PEX5-related protein; a 99.6 4E-15 1.4E-19 162.9 19.2 260 525-790 64-351 (365)
24 2ooe_A Cleavage stimulation fa 99.6 6.2E-13 2.1E-17 153.4 38.0 209 578-794 255-491 (530)
25 2ooe_A Cleavage stimulation fa 99.6 1.5E-13 5.2E-18 158.5 32.5 409 321-765 12-496 (530)
26 3spa_A Mtrpol, DNA-directed RN 99.6 7.8E-16 2.7E-20 176.9 12.1 164 490-653 123-307 (1134)
27 4g1t_A Interferon-induced prot 99.6 1.8E-13 6.1E-18 155.6 30.9 366 391-806 50-470 (472)
28 3mkr_A Coatomer subunit epsilo 99.6 9.5E-14 3.2E-18 145.8 25.9 268 503-787 8-286 (291)
29 1fch_A Peroxisomal targeting s 99.6 2.9E-14 9.9E-19 156.1 22.9 278 404-722 37-354 (368)
30 3spa_A Mtrpol, DNA-directed RN 99.6 5.8E-16 2E-20 178.0 8.7 150 526-712 127-286 (1134)
31 2xm6_A Protein corresponding t 99.6 1.6E-12 5.3E-17 148.4 37.0 351 422-796 38-433 (490)
32 3cv0_A Peroxisome targeting si 99.6 4.9E-14 1.7E-18 151.3 21.5 255 529-790 24-310 (327)
33 3mkr_A Coatomer subunit epsilo 99.6 9.5E-14 3.2E-18 145.8 19.9 244 534-794 7-263 (291)
34 4eqf_A PEX5-related protein; a 99.6 8.7E-14 3E-18 152.2 19.7 231 560-795 64-310 (365)
35 3cv0_A Peroxisome targeting si 99.5 1.3E-12 4.5E-17 140.1 25.2 258 423-724 21-312 (327)
36 4g1t_A Interferon-induced prot 99.5 6.8E-12 2.3E-16 142.4 28.8 388 322-773 51-471 (472)
37 2pl2_A Hypothetical conserved 99.5 5E-13 1.7E-17 133.8 16.2 194 593-793 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.5 1.9E-12 6.5E-17 133.4 19.3 223 527-794 6-235 (258)
39 3uq3_A Heat shock protein STI1 99.4 2.1E-12 7.3E-17 133.0 18.4 235 494-774 5-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.4 7.1E-12 2.4E-16 130.6 19.0 240 539-789 18-269 (275)
41 3u4t_A TPR repeat-containing p 99.4 6.4E-12 2.2E-16 130.8 17.7 245 497-780 6-269 (272)
42 2ho1_A Type 4 fimbrial biogene 99.3 3.1E-11 1.1E-15 123.9 19.5 196 596-795 37-238 (252)
43 2vq2_A PILW, putative fimbrial 99.3 5.5E-11 1.9E-15 119.4 19.5 196 595-794 7-210 (225)
44 2ho1_A Type 4 fimbrial biogene 99.3 1.2E-10 4E-15 119.6 20.9 208 526-770 37-247 (252)
45 2h6f_A Protein farnesyltransfe 99.3 7.5E-11 2.6E-15 128.0 20.3 242 528-779 99-366 (382)
46 3e4b_A ALGK; tetratricopeptide 99.3 2.1E-10 7.1E-15 128.6 24.4 342 236-657 8-388 (452)
47 2q7f_A YRRB protein; TPR, prot 99.3 2.1E-11 7.2E-16 124.3 14.9 195 595-794 22-221 (243)
48 2h6f_A Protein farnesyltransfe 99.3 7.7E-11 2.6E-15 127.9 20.1 243 562-839 98-366 (382)
49 3e4b_A ALGK; tetratricopeptide 99.3 2.2E-10 7.4E-15 128.5 24.2 343 370-764 16-390 (452)
50 2q7f_A YRRB protein; TPR, prot 99.3 2.6E-11 8.9E-16 123.6 14.9 215 525-780 22-241 (243)
51 3u4t_A TPR repeat-containing p 99.3 2.4E-10 8.2E-15 118.8 21.8 229 459-724 3-247 (272)
52 1ouv_A Conserved hypothetical 99.3 4E-10 1.4E-14 117.2 22.7 221 528-764 8-254 (273)
53 2pl2_A Hypothetical conserved 99.3 1.3E-10 4.3E-15 116.2 17.9 203 491-724 2-211 (217)
54 2vq2_A PILW, putative fimbrial 99.3 2E-10 6.8E-15 115.3 19.4 208 525-772 7-222 (225)
55 4a1s_A PINS, partner of inscut 99.3 3.2E-11 1.1E-15 134.1 14.4 264 498-794 52-371 (411)
56 1ouv_A Conserved hypothetical 99.3 6.8E-10 2.3E-14 115.5 23.6 223 560-796 5-252 (273)
57 3vtx_A MAMA; tetratricopeptide 99.2 1.7E-10 5.8E-15 111.9 17.2 164 626-795 4-170 (184)
58 4abn_A Tetratricopeptide repea 99.2 2.4E-11 8.4E-16 137.2 12.4 205 577-789 84-315 (474)
59 1xnf_A Lipoprotein NLPI; TPR, 99.2 1.1E-10 3.6E-15 121.6 16.2 216 572-795 16-244 (275)
60 3ro2_A PINS homolog, G-protein 99.2 1.5E-10 5E-15 124.3 17.7 264 499-795 10-332 (338)
61 3sf4_A G-protein-signaling mod 99.2 9.2E-11 3.2E-15 129.9 16.1 269 493-794 8-335 (406)
62 3sf4_A G-protein-signaling mod 99.2 5.1E-11 1.7E-15 132.0 13.9 298 457-784 7-365 (406)
63 4e6h_A MRNA 3'-END-processing 99.2 2.3E-08 7.8E-13 115.9 34.6 217 544-767 327-576 (679)
64 4gyw_A UDP-N-acetylglucosamine 99.2 1.4E-10 4.9E-15 136.0 15.2 161 627-794 9-173 (723)
65 2ond_A Cleavage stimulation fa 99.1 3.6E-09 1.2E-13 112.1 23.1 186 578-768 81-277 (308)
66 4a1s_A PINS, partner of inscut 99.1 2.6E-10 9E-15 126.6 14.8 275 460-764 49-375 (411)
67 4e6h_A MRNA 3'-END-processing 99.1 1.3E-07 4.3E-12 109.7 36.3 228 478-711 328-587 (679)
68 3ro2_A PINS homolog, G-protein 99.1 4.2E-10 1.4E-14 120.6 14.8 270 462-764 8-335 (338)
69 3ulq_A Response regulator aspa 99.1 7.2E-10 2.4E-14 121.8 15.3 221 571-794 113-367 (383)
70 3nf1_A KLC 1, kinesin light ch 99.1 2.7E-10 9.2E-15 120.9 11.1 240 528-794 29-306 (311)
71 3vtx_A MAMA; tetratricopeptide 99.1 1.2E-09 4E-14 105.9 14.4 165 595-766 4-175 (184)
72 3ulq_A Response regulator aspa 99.1 2.5E-09 8.4E-14 117.5 18.1 229 534-764 111-371 (383)
73 3as5_A MAMA; tetratricopeptide 99.1 1.8E-09 6.3E-14 104.3 15.1 127 664-794 44-172 (186)
74 4i17_A Hypothetical protein; T 99.0 2.1E-09 7.2E-14 108.3 15.1 186 595-794 6-208 (228)
75 4i17_A Hypothetical protein; T 99.0 3.7E-09 1.3E-13 106.5 15.9 205 559-777 5-225 (228)
76 2ond_A Cleavage stimulation fa 99.0 1.4E-08 4.8E-13 107.5 19.6 210 579-795 34-270 (308)
77 1hz4_A MALT regulatory protein 99.0 9E-08 3.1E-12 104.5 26.4 194 599-794 96-321 (373)
78 3as5_A MAMA; tetratricopeptide 99.0 1.1E-08 3.7E-13 98.8 17.0 169 596-769 8-181 (186)
79 3q15_A PSP28, response regulat 99.0 8.8E-09 3E-13 112.8 17.5 220 571-793 111-363 (378)
80 3nf1_A KLC 1, kinesin light ch 99.0 3.2E-09 1.1E-13 112.5 12.7 240 494-764 27-310 (311)
81 4abn_A Tetratricopeptide repea 98.9 7.5E-09 2.6E-13 116.7 16.0 206 511-724 85-318 (474)
82 1qqe_A Vesicular transport pro 98.9 2.3E-08 7.7E-13 104.9 15.2 161 629-791 79-265 (292)
83 4gyw_A UDP-N-acetylglucosamine 98.9 8.5E-09 2.9E-13 121.0 12.8 163 595-764 8-177 (723)
84 3q15_A PSP28, response regulat 98.8 2E-07 6.9E-12 101.8 22.7 225 534-761 109-365 (378)
85 4ga2_A E3 SUMO-protein ligase 98.8 3.3E-09 1.1E-13 98.7 7.0 139 636-781 6-149 (150)
86 1qqe_A Vesicular transport pro 98.8 2.7E-08 9.3E-13 104.3 14.2 168 598-767 79-275 (292)
87 3edt_B KLC 2, kinesin light ch 98.8 8.8E-09 3E-13 107.2 9.9 164 629-794 87-280 (283)
88 1hz4_A MALT regulatory protein 98.8 9.8E-07 3.3E-11 96.1 26.5 194 497-690 96-321 (373)
89 3qky_A Outer membrane assembly 98.8 1.7E-07 6E-12 96.3 17.4 202 595-841 14-247 (261)
90 3mv2_B Coatomer subunit epsilo 98.7 6E-07 2.1E-11 92.0 18.2 159 629-794 102-281 (310)
91 2fo7_A Synthetic consensus TPR 98.7 2.2E-07 7.7E-12 83.8 13.8 128 630-794 4-131 (136)
92 2fo7_A Synthetic consensus TPR 98.7 2.7E-07 9.4E-12 83.2 14.1 124 598-724 3-129 (136)
93 2yhc_A BAMD, UPF0169 lipoprote 98.7 4E-07 1.4E-11 91.1 16.4 179 597-797 5-215 (225)
94 3edt_B KLC 2, kinesin light ch 98.7 4.4E-07 1.5E-11 94.1 17.1 163 597-761 86-281 (283)
95 4ga2_A E3 SUMO-protein ligase 98.7 4.5E-08 1.5E-12 90.9 8.3 120 669-793 4-127 (150)
96 3mv2_B Coatomer subunit epsilo 98.6 5.5E-07 1.9E-11 92.3 16.8 242 504-769 23-290 (310)
97 2pzi_A Probable serine/threoni 98.6 5.7E-08 2E-12 114.7 10.0 152 572-729 402-566 (681)
98 3qky_A Outer membrane assembly 98.6 3.8E-07 1.3E-11 93.8 13.5 204 560-784 14-250 (261)
99 3qou_A Protein YBBN; thioredox 98.6 3.3E-07 1.1E-11 95.6 12.9 160 626-792 116-281 (287)
100 2pzi_A Probable serine/threoni 98.6 5.5E-07 1.9E-11 106.3 15.8 169 537-712 402-582 (681)
101 4gco_A Protein STI-1; structur 98.5 4.9E-07 1.7E-11 80.8 10.8 93 699-793 14-108 (126)
102 2r5s_A Uncharacterized protein 98.5 3.6E-07 1.2E-11 87.4 10.4 154 633-793 12-171 (176)
103 2vsy_A XCC0866; transferase, g 98.5 6.7E-07 2.3E-11 103.6 14.7 160 609-773 2-169 (568)
104 3gyz_A Chaperone protein IPGC; 98.5 4.4E-07 1.5E-11 83.7 9.9 101 693-795 30-133 (151)
105 3rjv_A Putative SEL1 repeat pr 98.5 2.8E-06 9.6E-11 83.9 16.2 161 625-796 16-198 (212)
106 4gco_A Protein STI-1; structur 98.5 6.7E-07 2.3E-11 79.9 10.1 113 658-775 8-124 (126)
107 2ifu_A Gamma-SNAP; membrane fu 98.5 7.2E-07 2.5E-11 94.1 11.9 162 603-768 43-230 (307)
108 3urz_A Uncharacterized protein 98.5 1.2E-06 4.1E-11 86.4 12.7 126 632-765 59-190 (208)
109 2ifu_A Gamma-SNAP; membrane fu 98.4 1.5E-06 5.2E-11 91.7 13.9 220 507-753 4-253 (307)
110 2vgx_A Chaperone SYCD; alterna 98.4 5E-07 1.7E-11 83.4 8.9 99 694-794 16-117 (148)
111 2uy1_A Cleavage stimulation fa 98.4 4.2E-05 1.4E-09 85.9 26.2 367 334-759 6-411 (493)
112 3qou_A Protein YBBN; thioredox 98.4 2.8E-06 9.5E-11 88.5 15.2 131 660-795 114-248 (287)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.4 7.8E-06 2.7E-10 80.7 16.1 145 599-765 9-154 (213)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.3 5.8E-06 2E-10 81.6 14.9 124 665-795 9-150 (213)
115 2xcb_A PCRH, regulatory protei 98.3 2.8E-06 9.5E-11 77.8 11.5 95 698-794 18-114 (142)
116 2yhc_A BAMD, UPF0169 lipoprote 98.3 5.6E-06 1.9E-10 82.7 14.7 186 561-768 4-220 (225)
117 3urz_A Uncharacterized protein 98.3 1.2E-06 4E-11 86.4 9.4 156 633-794 10-185 (208)
118 3u3w_A Transcriptional activat 98.3 1.9E-05 6.4E-10 82.5 19.2 159 633-793 81-264 (293)
119 2r5s_A Uncharacterized protein 98.3 2.5E-06 8.6E-11 81.4 11.2 151 601-759 11-171 (176)
120 3dra_A Protein farnesyltransfe 98.3 2.9E-05 9.8E-10 80.5 19.8 179 611-794 84-286 (306)
121 2qfc_A PLCR protein; TPR, HTH, 98.3 6.3E-06 2.2E-10 86.2 14.8 162 630-793 78-264 (293)
122 2vsy_A XCC0866; transferase, g 98.3 4.9E-06 1.7E-10 96.3 14.6 144 575-724 3-154 (568)
123 2c2l_A CHIP, carboxy terminus 98.3 9.7E-07 3.3E-11 91.7 7.7 191 595-795 3-199 (281)
124 2uy1_A Cleavage stimulation fa 98.3 0.00092 3.2E-08 74.9 32.2 81 305-385 28-117 (493)
125 1na0_A Designed protein CTPR3; 98.2 6.7E-06 2.3E-10 72.6 11.6 114 663-780 10-125 (125)
126 3rjv_A Putative SEL1 repeat pr 98.2 3.4E-05 1.1E-09 76.1 17.4 168 514-690 6-196 (212)
127 3upv_A Heat shock protein STI1 98.2 6.6E-06 2.2E-10 73.3 11.0 94 699-794 5-100 (126)
128 1a17_A Serine/threonine protei 98.2 9E-06 3.1E-10 76.3 12.2 125 665-793 16-144 (166)
129 2lni_A Stress-induced-phosphop 98.2 6.8E-06 2.3E-10 73.7 10.8 113 664-781 18-133 (133)
130 2vyi_A SGTA protein; chaperone 98.2 7.4E-06 2.5E-10 73.1 10.8 116 663-782 13-130 (131)
131 1p5q_A FKBP52, FK506-binding p 98.2 5.4E-06 1.8E-10 88.5 11.3 93 699-793 197-292 (336)
132 3u3w_A Transcriptional activat 98.2 0.0001 3.6E-09 76.8 21.0 158 602-761 81-266 (293)
133 3dra_A Protein farnesyltransfe 98.2 0.00027 9.1E-09 73.2 23.1 160 610-774 124-301 (306)
134 2e2e_A Formate-dependent nitri 98.2 1.2E-05 4.1E-10 76.7 12.0 94 699-794 45-143 (177)
135 4f3v_A ESX-1 secretion system 98.1 9E-06 3.1E-10 82.2 10.0 134 633-773 108-248 (282)
136 2kck_A TPR repeat; tetratricop 98.1 1.5E-05 5E-10 68.9 10.2 97 698-796 6-107 (112)
137 2qfc_A PLCR protein; TPR, HTH, 98.1 4.6E-05 1.6E-09 79.5 15.4 161 599-761 78-266 (293)
138 3gyz_A Chaperone protein IPGC; 98.1 1.1E-05 3.6E-10 74.4 9.0 92 628-724 37-130 (151)
139 3gw4_A Uncharacterized protein 98.1 4.2E-05 1.4E-09 74.5 13.8 153 639-794 4-175 (203)
140 1hxi_A PEX5, peroxisome target 98.1 1.1E-05 3.6E-10 71.4 8.5 94 699-794 18-113 (121)
141 2e2e_A Formate-dependent nitri 98.1 2E-05 6.7E-10 75.1 11.0 130 637-772 20-155 (177)
142 1elw_A TPR1-domain of HOP; HOP 98.1 3E-05 1E-09 67.5 11.4 91 701-793 7-99 (118)
143 2fbn_A 70 kDa peptidylprolyl i 98.0 2.3E-06 7.9E-11 83.5 4.4 170 601-793 9-184 (198)
144 2lni_A Stress-induced-phosphop 98.0 3.7E-05 1.2E-09 68.8 11.8 95 698-794 16-112 (133)
145 2vgx_A Chaperone SYCD; alterna 98.0 1.2E-05 3.9E-10 74.1 8.3 108 659-771 17-128 (148)
146 4f3v_A ESX-1 secretion system 98.0 9.4E-06 3.2E-10 82.1 7.5 181 608-795 18-237 (282)
147 3q49_B STIP1 homology and U bo 98.0 3.2E-05 1.1E-09 69.8 10.6 95 698-794 9-105 (137)
148 2dba_A Smooth muscle cell asso 98.0 5.5E-05 1.9E-09 69.1 12.3 92 700-793 30-126 (148)
149 1na0_A Designed protein CTPR3; 98.0 6.4E-05 2.2E-09 66.1 12.3 95 698-794 9-105 (125)
150 1elw_A TPR1-domain of HOP; HOP 98.0 5.4E-05 1.8E-09 65.9 11.6 108 665-776 7-116 (118)
151 3rkv_A Putative peptidylprolyl 98.0 3.1E-05 1E-09 72.5 10.2 85 730-842 63-148 (162)
152 1wao_1 Serine/threonine protei 98.0 2.8E-05 9.7E-10 87.2 11.5 113 673-790 17-134 (477)
153 3sz7_A HSC70 cochaperone (SGT) 97.9 3.5E-05 1.2E-09 72.3 10.1 93 700-794 13-107 (164)
154 3gw4_A Uncharacterized protein 97.9 2.9E-05 9.7E-10 75.7 9.9 152 609-762 5-177 (203)
155 2vyi_A SGTA protein; chaperone 97.9 7.4E-05 2.5E-09 66.4 11.8 95 698-794 12-108 (131)
156 4gcn_A Protein STI-1; structur 97.9 2.4E-05 8.3E-10 69.7 8.3 93 700-794 10-111 (127)
157 2dba_A Smooth muscle cell asso 97.9 8E-05 2.7E-09 68.0 12.1 109 664-777 30-144 (148)
158 2hr2_A Hypothetical protein; a 97.9 7.4E-06 2.5E-10 74.6 4.7 105 665-794 14-130 (159)
159 3sz7_A HSC70 cochaperone (SGT) 97.9 7.6E-05 2.6E-09 70.0 11.1 107 663-774 12-121 (164)
160 1wao_1 Serine/threonine protei 97.9 3.5E-05 1.2E-09 86.4 10.2 87 633-724 12-100 (477)
161 1a17_A Serine/threonine protei 97.9 9.6E-05 3.3E-09 69.1 11.7 127 629-760 15-145 (166)
162 3q7a_A Farnesyltransferase alp 97.8 0.00054 1.9E-08 71.7 18.0 184 606-794 98-330 (349)
163 3dss_A Geranylgeranyl transfer 97.8 0.0014 4.7E-08 68.3 21.0 191 577-775 90-318 (331)
164 3upv_A Heat shock protein STI1 97.8 7.9E-05 2.7E-09 66.1 10.0 106 665-775 7-121 (126)
165 2xcb_A PCRH, regulatory protei 97.8 5E-05 1.7E-09 69.2 8.7 103 665-772 21-126 (142)
166 4gcn_A Protein STI-1; structur 97.8 5.3E-05 1.8E-09 67.5 8.6 91 629-724 10-109 (127)
167 2fbn_A 70 kDa peptidylprolyl i 97.8 2E-05 6.7E-10 76.8 6.1 93 700-794 40-150 (198)
168 1elr_A TPR2A-domain of HOP; HO 97.8 0.00011 3.7E-09 65.3 10.2 94 699-794 5-107 (131)
169 2xev_A YBGF; tetratricopeptide 97.8 7.2E-05 2.5E-09 66.6 8.6 90 703-794 7-104 (129)
170 1p5q_A FKBP52, FK506-binding p 97.7 0.0001 3.5E-09 78.5 10.9 63 730-794 196-258 (336)
171 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00016 5.5E-09 80.6 12.6 94 698-793 317-413 (457)
172 2hr2_A Hypothetical protein; a 97.7 6E-05 2.1E-09 68.6 7.0 111 629-772 13-142 (159)
173 3q49_B STIP1 homology and U bo 97.7 0.00012 4.2E-09 65.8 9.3 98 662-764 9-109 (137)
174 2kck_A TPR repeat; tetratricop 97.7 0.0003 1E-08 60.3 11.3 96 626-724 5-103 (112)
175 3k9i_A BH0479 protein; putativ 97.7 3E-05 1E-09 67.9 4.5 83 710-794 2-89 (117)
176 1elr_A TPR2A-domain of HOP; HO 97.6 7.9E-05 2.7E-09 66.2 7.1 61 629-690 6-66 (131)
177 3ro3_A PINS homolog, G-protein 97.6 0.00018 6.3E-09 66.6 9.9 61 732-794 91-157 (164)
178 2xev_A YBGF; tetratricopeptide 97.6 0.00035 1.2E-08 62.0 11.2 95 671-770 11-114 (129)
179 3q7a_A Farnesyltransferase alp 97.6 0.0065 2.2E-07 63.5 22.1 225 540-773 68-344 (349)
180 2c2l_A CHIP, carboxy terminus 97.6 0.00015 5.2E-09 74.9 9.9 111 661-776 3-116 (281)
181 1hxi_A PEX5, peroxisome target 97.6 0.00018 6.3E-09 63.2 8.8 95 666-765 21-118 (121)
182 2if4_A ATFKBP42; FKBP-like, al 97.6 7.5E-05 2.6E-09 79.6 7.2 144 630-795 182-328 (338)
183 4b4t_Q 26S proteasome regulato 97.6 0.0011 3.9E-08 73.2 16.9 192 502-724 12-242 (434)
184 1ihg_A Cyclophilin 40; ppiase 97.6 0.00019 6.6E-09 77.3 10.2 88 698-787 273-362 (370)
185 1dce_A Protein (RAB geranylger 97.5 0.0011 3.7E-08 75.6 16.4 170 611-784 44-244 (567)
186 4b4t_Q 26S proteasome regulato 97.5 0.00091 3.1E-08 74.0 14.4 178 603-782 11-225 (434)
187 3rkv_A Putative peptidylprolyl 97.5 0.00021 7.2E-09 66.7 7.7 76 698-775 63-141 (162)
188 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00013 4.4E-09 77.7 7.0 113 664-795 181-293 (338)
189 1ihg_A Cyclophilin 40; ppiase 97.4 0.00046 1.6E-08 74.3 10.7 110 664-794 225-335 (370)
190 3ro3_A PINS homolog, G-protein 97.4 0.00032 1.1E-08 64.9 8.2 96 665-762 52-159 (164)
191 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.00095 3.3E-08 74.3 13.3 112 662-794 268-379 (457)
192 3k9i_A BH0479 protein; putativ 97.4 0.00011 3.9E-09 64.1 4.5 68 699-768 28-97 (117)
193 3dss_A Geranylgeranyl transfer 97.4 0.011 3.9E-07 61.4 20.1 179 612-794 90-303 (331)
194 3n71_A Histone lysine methyltr 97.3 0.00036 1.2E-08 77.5 8.7 128 672-801 319-470 (490)
195 2l6j_A TPR repeat-containing p 97.3 0.00021 7.3E-09 61.3 5.4 89 698-788 4-100 (111)
196 3ma5_A Tetratricopeptide repea 97.3 0.00087 3E-08 56.4 8.5 64 729-794 6-69 (100)
197 1na3_A Designed protein CTPR2; 97.3 0.00068 2.3E-08 55.6 7.5 81 698-780 9-91 (91)
198 2kat_A Uncharacterized protein 97.2 0.00082 2.8E-08 58.2 7.3 77 716-794 3-81 (115)
199 1zu2_A Mitochondrial import re 97.1 0.00023 8E-09 64.6 3.2 83 710-794 14-119 (158)
200 3lvg_A Clathrin heavy chain 1; 97.1 0.00018 6.2E-09 76.0 2.6 75 602-684 460-534 (624)
201 3bee_A Putative YFRE protein; 97.1 0.0025 8.6E-08 52.5 9.1 71 727-797 3-74 (93)
202 1zu2_A Mitochondrial import re 97.0 0.0012 4.2E-08 59.8 7.1 124 637-795 12-147 (158)
203 3n71_A Histone lysine methyltr 97.0 0.0016 5.6E-08 72.3 9.7 121 638-760 320-463 (490)
204 2l6j_A TPR repeat-containing p 96.7 0.0038 1.3E-07 53.2 7.7 65 728-794 2-66 (111)
205 1dce_A Protein (RAB geranylger 96.7 0.013 4.6E-07 66.6 13.9 147 641-793 43-219 (567)
206 1na3_A Designed protein CTPR2; 96.7 0.0089 3.1E-07 48.6 9.3 63 730-794 9-71 (91)
207 1klx_A Cysteine rich protein B 96.6 0.013 4.3E-07 52.6 10.9 115 641-796 9-127 (138)
208 3qwp_A SET and MYND domain-con 96.6 0.0023 8E-08 69.9 7.0 113 708-840 297-427 (429)
209 3ly7_A Transcriptional activat 96.6 0.017 5.7E-07 60.3 12.5 46 625-672 192-243 (372)
210 1klx_A Cysteine rich protein B 96.5 0.0057 2E-07 54.9 7.6 107 609-724 8-123 (138)
211 3qww_A SET and MYND domain-con 96.2 0.0028 9.6E-08 69.1 4.7 61 732-794 342-410 (433)
212 3ma5_A Tetratricopeptide repea 96.2 0.01 3.4E-07 49.7 7.0 62 627-690 7-69 (100)
213 2kat_A Uncharacterized protein 96.2 0.009 3.1E-07 51.4 7.0 44 645-690 3-47 (115)
214 3ly7_A Transcriptional activat 95.9 0.063 2.2E-06 56.0 12.7 130 659-794 191-338 (372)
215 2kc7_A BFR218_protein; tetratr 95.9 0.018 6.3E-07 47.7 7.1 63 705-769 7-72 (99)
216 3lvg_A Clathrin heavy chain 1; 95.8 0.0031 1.1E-07 66.8 2.1 238 290-547 53-325 (624)
217 2kc7_A BFR218_protein; tetratr 95.8 0.028 9.4E-07 46.6 7.8 86 668-766 6-95 (99)
218 1wy6_A Hypothetical protein ST 95.7 0.61 2.1E-05 40.0 15.4 140 638-798 18-157 (172)
219 3mkq_A Coatomer beta'-subunit; 95.7 0.23 8E-06 59.5 19.0 102 605-724 661-762 (814)
220 3mkq_A Coatomer beta'-subunit; 95.6 0.23 8E-06 59.5 18.4 115 502-652 660-774 (814)
221 3qww_A SET and MYND domain-con 95.6 0.036 1.2E-06 60.4 9.9 27 732-760 384-410 (433)
222 1pc2_A Mitochondria fission pr 95.6 0.061 2.1E-06 48.1 9.4 65 728-794 30-99 (152)
223 3qwp_A SET and MYND domain-con 95.5 0.058 2E-06 58.8 10.9 90 635-724 295-397 (429)
224 3u64_A Protein TP_0956; tetrat 95.1 0.05 1.7E-06 54.3 8.1 87 715-802 180-276 (301)
225 2v5f_A Prolyl 4-hydroxylase su 93.9 0.18 6.3E-06 42.1 7.9 68 703-772 10-86 (104)
226 1pc2_A Mitochondria fission pr 93.5 0.22 7.5E-06 44.5 7.8 90 643-767 14-106 (152)
227 3bee_A Putative YFRE protein; 92.8 0.4 1.4E-05 39.1 7.9 68 696-765 4-76 (93)
228 3u64_A Protein TP_0956; tetrat 92.6 3.2 0.00011 41.4 15.5 111 609-724 134-266 (301)
229 4gns_B Protein CSD3, chitin bi 92.4 0.74 2.5E-05 53.2 12.3 55 736-792 343-397 (754)
230 3mkq_B Coatomer subunit alpha; 92.4 1.5 5.2E-05 40.2 11.9 106 605-728 14-119 (177)
231 3mkq_B Coatomer subunit alpha; 90.8 9.7 0.00033 34.8 16.5 100 572-688 16-115 (177)
232 3lpz_A GET4 (YOR164C homolog); 90.4 17 0.00058 37.1 20.9 110 296-416 40-160 (336)
233 1nzn_A CGI-135 protein, fissio 89.7 1.8 6.1E-05 37.1 9.0 92 671-766 10-108 (126)
234 2v5f_A Prolyl 4-hydroxylase su 89.4 0.68 2.3E-05 38.6 6.3 65 665-729 8-78 (104)
235 1y8m_A FIS1; mitochondria, unk 88.9 6.5 0.00022 34.3 12.0 67 728-794 37-105 (144)
236 1nzn_A CGI-135 protein, fissio 88.8 4 0.00014 35.0 10.5 88 639-729 13-106 (126)
237 1wy6_A Hypothetical protein ST 87.2 14 0.00047 31.9 13.5 68 525-593 90-157 (172)
238 4b4t_P 26S proteasome regulato 86.9 13 0.00046 40.2 16.2 94 631-724 141-244 (445)
239 4ady_A RPN2, 26S proteasome re 85.6 65 0.0022 38.1 28.9 215 503-723 383-619 (963)
240 2wpv_A GET4, UPF0363 protein Y 85.4 34 0.0012 34.7 19.8 110 296-416 38-158 (312)
241 4h7y_A Dual specificity protei 85.0 5 0.00017 35.4 9.1 52 712-765 74-127 (161)
242 4b4t_P 26S proteasome regulato 84.5 49 0.0017 35.7 20.3 315 336-691 30-386 (445)
243 2wpv_A GET4, UPF0363 protein Y 84.4 37 0.0013 34.4 20.4 167 498-691 37-217 (312)
244 3lpz_A GET4 (YOR164C homolog); 83.9 41 0.0014 34.4 20.6 166 498-690 39-215 (336)
245 2qx5_A Nucleoporin NIC96; mRNA 83.5 37 0.0013 38.5 18.1 40 296-335 157-199 (661)
246 2uwj_G Type III export protein 81.2 9.7 0.00033 30.5 8.4 86 577-667 22-107 (115)
247 2p58_C Putative type III secre 80.8 10 0.00035 30.5 8.4 86 577-667 23-108 (116)
248 4ady_A RPN2, 26S proteasome re 78.8 1.1E+02 0.0038 36.1 32.0 261 401-672 383-671 (963)
249 3ffl_A Anaphase-promoting comp 78.0 11 0.00037 33.9 9.0 28 700-727 124-151 (167)
250 3o48_A Mitochondria fission 1 76.1 8.4 0.00029 33.2 7.3 68 696-765 38-111 (134)
251 1wdy_A 2-5A-dependent ribonucl 75.0 39 0.0014 33.3 14.0 207 24-255 6-240 (285)
252 1qsa_A Protein (soluble lytic 75.0 1.2E+02 0.0039 34.3 31.9 341 131-549 80-436 (618)
253 2ff4_A Probable regulatory pro 74.8 10 0.00036 40.2 9.7 66 633-699 177-246 (388)
254 1y8m_A FIS1; mitochondria, unk 74.2 29 0.001 30.3 10.3 30 735-766 82-111 (144)
255 1qsa_A Protein (soluble lytic 73.0 1.3E+02 0.0044 33.9 33.7 52 299-350 293-347 (618)
256 4h7y_A Dual specificity protei 72.4 33 0.0011 30.3 10.2 63 539-602 73-135 (161)
257 1v54_E Cytochrome C oxidase po 72.2 14 0.00046 30.0 7.1 60 645-706 28-87 (109)
258 4g8k_A 2-5A-dependent ribonucl 72.2 52 0.0018 33.7 14.4 102 278-391 221-328 (337)
259 3o48_A Mitochondria fission 1 71.9 15 0.00051 31.6 7.9 86 645-731 21-112 (134)
260 1n11_A Ankyrin; clathrin, BAND 71.0 67 0.0023 34.3 15.6 39 218-256 95-135 (437)
261 3kea_A K1L; tropism, ANK repea 71.0 70 0.0024 31.8 14.7 159 10-180 18-183 (285)
262 1v54_E Cytochrome C oxidase po 69.4 33 0.0011 27.8 8.7 48 723-772 38-85 (109)
263 1wdy_A 2-5A-dependent ribonucl 68.9 38 0.0013 33.4 12.2 26 127-153 6-31 (285)
264 2uwj_G Type III export protein 68.1 18 0.00063 29.0 6.9 61 133-201 49-109 (115)
265 4gns_B Protein CSD3, chitin bi 66.8 20 0.00068 41.4 10.1 52 501-552 344-397 (754)
266 3ltm_A Alpha-REP4; protein eng 65.6 88 0.003 29.1 16.5 91 595-690 94-184 (211)
267 2p58_C Putative type III secre 65.0 19 0.00066 28.9 6.5 61 133-201 50-110 (116)
268 3txn_A 26S proteasome regulato 65.0 61 0.0021 34.1 12.7 129 562-690 20-167 (394)
269 2ff4_A Probable regulatory pro 64.9 13 0.00046 39.4 7.9 67 733-801 174-245 (388)
270 4fhn_B Nucleoporin NUP120; pro 64.5 44 0.0015 41.3 13.4 161 295-474 816-986 (1139)
271 1zbp_A Hypothetical protein VP 64.3 46 0.0016 32.6 10.6 121 636-768 6-136 (273)
272 1n11_A Ankyrin; clathrin, BAND 63.7 92 0.0031 33.2 14.7 26 24-49 15-40 (437)
273 4fhn_B Nucleoporin NUP120; pro 63.5 74 0.0025 39.2 15.3 60 733-794 902-966 (1139)
274 3ffl_A Anaphase-promoting comp 62.8 45 0.0015 30.0 9.4 121 656-792 12-148 (167)
275 3eiq_C Programmed cell death p 60.9 64 0.0022 33.4 11.7 73 498-570 221-297 (358)
276 3kea_A K1L; tropism, ANK repea 60.4 52 0.0018 32.8 11.2 12 346-357 212-223 (285)
277 2y69_E Cytochrome C oxidase su 59.0 34 0.0012 29.3 7.4 60 645-706 71-130 (152)
278 4b4t_R RPN7, 26S proteasome re 57.7 61 0.0021 34.7 11.6 96 629-724 133-234 (429)
279 2y69_E Cytochrome C oxidase su 55.1 73 0.0025 27.4 8.7 54 717-772 75-128 (152)
280 2qx5_A Nucleoporin NIC96; mRNA 50.3 2.5E+02 0.0085 31.8 15.2 80 328-418 300-382 (661)
281 1zbp_A Hypothetical protein VP 48.0 27 0.00093 34.3 5.9 59 706-766 5-65 (273)
282 3mv2_A Coatomer subunit alpha; 47.6 1.3E+02 0.0043 30.4 10.8 56 725-796 200-257 (325)
283 3jxi_A Vanilloid receptor-rela 45.9 53 0.0018 31.9 8.3 89 162-256 9-115 (260)
284 2zu6_B Programmed cell death p 45.9 26 0.00089 35.5 5.8 197 23-228 6-234 (307)
285 4g8k_A 2-5A-dependent ribonucl 44.1 2.6E+02 0.009 28.1 17.3 274 23-357 25-329 (337)
286 4b4t_R RPN7, 26S proteasome re 42.9 84 0.0029 33.6 9.7 60 664-724 133-194 (429)
287 3ljn_A Hypothetical protein; a 40.5 1.1E+02 0.0039 31.4 10.3 16 402-417 251-266 (364)
288 2k0q_A Putative uncharacterize 39.4 8.1 0.00028 28.4 0.6 22 910-931 8-29 (74)
289 2l0z_A Glycoprotein G2; zinc-b 38.9 10 0.00034 24.4 0.9 10 924-933 20-29 (42)
290 3jxi_A Vanilloid receptor-rela 38.7 69 0.0024 31.1 7.8 44 216-259 198-250 (260)
291 3txn_A 26S proteasome regulato 38.0 3.7E+02 0.013 28.1 19.9 27 394-420 21-47 (394)
292 3hra_A Ankyrin repeat family p 37.9 1.8E+02 0.0062 26.4 10.4 56 302-357 114-173 (201)
293 3eu9_A Huntingtin-interacting 37.6 1.5E+02 0.0051 27.8 10.0 205 27-258 13-234 (240)
294 3hra_A Ankyrin repeat family p 36.8 2.4E+02 0.0082 25.5 11.6 149 300-458 11-172 (201)
295 2d2s_A Exocyst complex compone 35.6 1.8E+02 0.006 28.0 9.6 89 161-258 24-118 (235)
296 1k1a_A B-cell lymphoma 3-encod 34.6 2.9E+02 0.0099 25.8 11.7 51 203-255 15-67 (241)
297 3eu9_A Huntingtin-interacting 33.6 1.8E+02 0.0063 27.2 9.9 12 138-149 20-31 (240)
298 3ltj_A Alpharep-4; protein eng 32.5 2.9E+02 0.0098 25.1 18.0 142 288-437 25-166 (201)
299 2nsz_A Programmed cell death p 32.5 1.6E+02 0.0053 25.2 7.8 100 295-394 11-123 (129)
300 3ltj_A Alpharep-4; protein eng 32.2 2.9E+02 0.0099 25.1 18.1 28 661-689 151-178 (201)
301 3b7b_A Euchromatic histone-lys 31.2 3.3E+02 0.011 25.4 11.8 39 217-255 25-65 (237)
302 1k1a_A B-cell lymphoma 3-encod 30.6 3E+02 0.01 25.7 10.9 25 61-85 16-40 (241)
303 2d2s_A Exocyst complex compone 29.7 2.6E+02 0.0088 26.8 9.7 27 595-621 90-116 (235)
304 3b7b_A Euchromatic histone-lys 28.5 1.9E+02 0.0064 27.2 8.9 12 138-149 55-66 (237)
305 2etb_A Transient receptor pote 28.3 1.8E+02 0.0063 27.8 8.9 121 128-258 92-245 (256)
306 3esl_A Checkpoint serine/threo 27.8 3.7E+02 0.013 24.9 12.9 86 732-845 82-169 (202)
307 3ljn_A Hypothetical protein; a 27.3 5E+02 0.017 26.3 13.9 41 217-257 154-196 (364)
308 2zu6_B Programmed cell death p 26.2 1.5E+02 0.0051 29.8 7.6 66 529-595 169-236 (307)
309 2rfa_A Transient receptor pote 25.7 3.8E+02 0.013 24.9 10.5 149 24-186 4-182 (232)
310 4a1g_A Mitotic checkpoint seri 25.4 3.5E+02 0.012 23.8 9.3 49 751-799 84-134 (152)
311 2pnn_A Transient receptor pote 24.4 3.9E+02 0.013 25.7 10.6 16 402-417 108-123 (273)
312 2lo3_A SAGA-associated factor 24.3 18 0.00062 23.5 0.2 12 890-901 16-27 (44)
313 3ltm_A Alpha-REP4; protein eng 23.9 4.2E+02 0.014 24.2 18.1 152 494-655 33-184 (211)
314 3aji_A 26S proteasome non-ATPa 23.7 3.9E+02 0.013 24.7 10.2 18 131-149 11-28 (231)
315 3ygs_P Procaspase 9; apoptosis 23.6 78 0.0027 25.5 4.0 39 138-176 51-89 (97)
316 2hgo_A CASSIICOLIN; toxin, dis 23.1 15 0.00053 20.3 -0.2 13 922-934 8-22 (27)
317 3mkr_B Coatomer subunit alpha; 22.9 2.1E+02 0.0071 28.8 7.7 126 637-796 112-248 (320)
318 2ion_A PDCD4, programmed cell 22.7 75 0.0026 28.1 4.1 62 295-356 13-79 (152)
319 3aji_A 26S proteasome non-ATPa 22.5 2.1E+02 0.0071 26.7 7.9 57 24-85 7-67 (231)
320 2fr5_A Cytidine deaminase; tet 22.1 2.2E+02 0.0074 24.9 6.9 87 829-917 15-120 (146)
321 2ion_A PDCD4, programmed cell 22.0 4E+02 0.014 23.3 9.1 65 498-562 13-81 (152)
322 2d30_A Cytidine deaminase; pur 21.4 1.5E+02 0.005 25.9 5.5 87 829-916 12-116 (141)
323 2pnn_A Transient receptor pote 21.2 2.6E+02 0.0087 27.1 8.4 41 216-256 206-255 (273)
324 2wvi_A Mitotic checkpoint seri 20.9 4.5E+02 0.015 23.4 9.0 49 751-799 79-129 (164)
325 3d9h_A CDNA FLJ77766, highly s 20.7 3.2E+02 0.011 26.7 9.1 210 19-256 11-244 (285)
326 1oyz_A Hypothetical protein YI 20.5 5.7E+02 0.02 24.5 20.6 116 559-677 103-221 (280)
327 3ygs_P Procaspase 9; apoptosis 20.4 1E+02 0.0035 24.7 4.1 38 305-342 51-88 (97)
328 3esl_A Checkpoint serine/threo 20.1 5.2E+02 0.018 23.9 9.5 53 643-696 95-148 (202)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-39 Score=379.51 Aligned_cols=481 Identities=8% Similarity=-0.037 Sum_probs=401.5
Q ss_pred HhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHH
Q 046194 300 MYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQI 379 (934)
Q Consensus 300 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 379 (934)
.+.++|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..++...|+++.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356778888999999999989999999999999999999999999999985 568989999999999999999999999
Q ss_pred HHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-------------------CccchHHHHHHHHhCCccH
Q 046194 380 HGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEH-------------------DQVSWNSVIGAFADSEALV 440 (934)
Q Consensus 380 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~ 440 (934)
+..+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~- 216 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF- 216 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH-
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH-
Confidence 9988654 678899999999999999999999999965433 478999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCccc-HHHHHHHHhccCCchH--HHHH-HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046194 441 SEAVKYYLDMRRAGWSPNGVT-FINILAAASSFSMGKL--GHQV-HAQVIKYNVANETTIENALLSCYGKCGEMDDCEKI 516 (934)
Q Consensus 441 ~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~--a~~i-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 516 (934)
++|+++|++|.+.+ |+..+ +..+...+...+..+. +..+ +..+...+..+...+++.++.+|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999998854 44433 3333332222222111 1111 44445555556667788889999999999999999
Q ss_pred HHhhccC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCc
Q 046194 517 FARMSER-RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFD 595 (934)
Q Consensus 517 ~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 595 (934)
|+++... ++..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..++.++...|++++|.++++.+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 9999873 489999999999999999999999999999865 3377889999999999999999999999998653 457
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046194 596 VVIGSALVDMYSKCGRIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSAC 672 (934)
Q Consensus 596 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 672 (934)
..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..+|..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8899999999999999999999999875 3457799999999999999999999999999864 44688999999999
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhc
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-------PITPN--SLIWRTVLGACCRA 743 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~ 743 (934)
.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...
T Consensus 452 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 9999999999999999874 3345889999999999999999999999988 45787 78999999999999
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 744 NCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|++++|...++++++++|+++..|..++++|.+.|+|++|.+.++++.+
T Consensus 530 --g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 530 --KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp --TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998875
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-38 Score=375.92 Aligned_cols=501 Identities=7% Similarity=-0.091 Sum_probs=339.6
Q ss_pred HhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCcccc
Q 046194 132 MYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSG 211 (934)
Q Consensus 132 ~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~ 211 (934)
.+.++ |....++..|+.++.+++..|+.++.+|.+.|++++|+.+|++|... .||..++
T Consensus 62 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~-------------- 120 (597)
T 2xpi_A 62 NTSTD-GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI------TGNPNDA-------------- 120 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HCCHHHH--------------
T ss_pred ccccc-CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh------CCCchHH--------------
Confidence 35667 88899999999999999999999999999999999999999999854 4554444
Q ss_pred chHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCch
Q 046194 212 SYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMV 291 (934)
Q Consensus 212 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 291 (934)
..++.+|.+.|++++|..+|+++.. ..+++
T Consensus 121 -----------------------~~l~~~~~~~g~~~~A~~~~~~~~~---------------------------~~~~~ 150 (597)
T 2xpi_A 121 -----------------------FWLAQVYCCTGDYARAKCLLTKEDL---------------------------YNRSS 150 (597)
T ss_dssp -----------------------HHHHHHHHHTTCHHHHHHHHHHTCG---------------------------GGTCH
T ss_pred -----------------------HHHHHHHHHcCcHHHHHHHHHHHhc---------------------------cccch
Confidence 4455666777777778887777642 13566
Q ss_pred hHHHHHHHHhhccCChhHHHHHHhcCCCC-------------------CcccHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046194 292 AVGNGLVNMYAKCGTIDDSRSVFRFMIGK-------------------DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDG 352 (934)
Q Consensus 292 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 352 (934)
.+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+.
T Consensus 151 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 229 (597)
T 2xpi_A 151 ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV- 229 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 67778888888888888888888854332 4789999999999999999999999999885
Q ss_pred CCCChhhHHHHHHHhhccCchHH---HHHH-HHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCccch
Q 046194 353 LMSSNFSLISTLSSCASLGWIML---GQQI-HGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE--HDQVSW 426 (934)
Q Consensus 353 ~~p~~~t~~~ll~a~~~~~~~~~---a~~i-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~ 426 (934)
.|+..+....+..+........ +..+ +..+...+..+...+++.++.+|.+.|++++|.++|+++.+ ++..+|
T Consensus 230 -~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 308 (597)
T 2xpi_A 230 -DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308 (597)
T ss_dssp -CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHH
T ss_pred -CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHH
Confidence 4554443333333322222211 1121 44445555556667788889999999999999999999987 789999
Q ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 046194 427 NSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGK 506 (934)
Q Consensus 427 ~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 506 (934)
+.++.+|.+.|++ ++|+++|+++.+.+. .+..++..++.++...|+.++|.+++..+.+.. +.+..+++.++.+|.+
T Consensus 309 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 309 LCKADTLFVRSRF-IDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCH-HHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 9999999999999 999999999987652 255566555555555555555555555544321 2234444444444444
Q ss_pred cCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHH
Q 046194 507 CGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVH 584 (934)
Q Consensus 507 ~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 584 (934)
+|++++|.++|+++.+. | +..+|+.++.+|.+.|++++|+++|++|...+
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------- 437 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---------------------------- 437 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------------------
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------
Confidence 44444444444444321 1 33344444444444444444444444443321
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh
Q 046194 585 ACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVT 664 (934)
Q Consensus 585 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 664 (934)
..+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+
T Consensus 438 ---------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 477 (597)
T 2xpi_A 438 ---------------------------------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLL 477 (597)
T ss_dssp ---------------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred ---------------------------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 1244566666666777777777777777777643 334667
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhh---CCCCC--cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVY---GLIPQ--LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVL 737 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 737 (934)
|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+.
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 7777778888888888888888776632 55676 678888888888888888888888887 3344 788999999
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
..|... |+.++|...++++++++|+++..|..|+++|..
T Consensus 558 ~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 558 LVYLHK--KIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHh--CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999 999999999999999999999999999998753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.4e-26 Score=259.08 Aligned_cols=198 Identities=13% Similarity=0.190 Sum_probs=169.0
Q ss_pred HHHHHHhhccC---C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhch---------hhHHH
Q 046194 513 CEKIFARMSER---R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASV---------ATLER 579 (934)
Q Consensus 513 A~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---------~~~~~ 579 (934)
+..+++.+.++ + ....++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+.. +.++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555443 1 23457888999999999999999999999999999999999999999754 45788
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC----CCCcccccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 580 GMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP----VRNVYSWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 580 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999886 57999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhc
Q 046194 656 DGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRA 711 (934)
Q Consensus 656 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 711 (934)
.|+.||..||++||.+|++.|++++|.++|++|.+. +..|+..+|+.+++.+++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999885 9999999999999988764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=1.4e-25 Score=252.90 Aligned_cols=214 Identities=15% Similarity=0.126 Sum_probs=161.8
Q ss_pred HHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 046194 341 AIMNFCAMRRDGLMSSN-FSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMP 419 (934)
Q Consensus 341 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 419 (934)
+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 33444555555554433 345566666666666666666666666666666666777777666666543221
Q ss_pred CCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHH
Q 046194 420 EHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENA 499 (934)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 499 (934)
.+.+.. ++|.++|++|...|+.||..||+++|.+|++.|+++.|.+++..|.+.|+.||..+||+
T Consensus 81 --------------~~~~~l-~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 --------------SPNPGL-SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp --------------SCCHHH-HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred --------------hhcchH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 123344 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhh
Q 046194 500 LLSCYGKCGEMDDCEKIFARMSER---RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVAT 576 (934)
Q Consensus 500 li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 576 (934)
||.+|++.|++++|.++|++|.+. ||..+|++||.+|++.|+.++|.++|++|++.|..|+..||+.++..++..+.
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a 225 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVA 225 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcc
Confidence 999999999999999999999875 89999999999999999999999999999999999999999999888877554
Q ss_pred H
Q 046194 577 L 577 (934)
Q Consensus 577 ~ 577 (934)
.
T Consensus 226 ~ 226 (501)
T 4g26_A 226 T 226 (501)
T ss_dssp H
T ss_pred h
Confidence 3
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=1.7e-22 Score=223.94 Aligned_cols=370 Identities=11% Similarity=0.045 Sum_probs=257.2
Q ss_pred HhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHH
Q 046194 366 SCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSE 442 (934)
Q Consensus 366 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~ 442 (934)
.+...|+++.|.+.+..+.+.. +.+...+..+...+...|++++|...++.... .+..+|..+...|.+.|++ ++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~-~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL-QE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH-HH
Confidence 3445666677766666665543 22334455555666666666666666554432 2444566666666666666 66
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 046194 443 AVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE 522 (934)
Q Consensus 443 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 522 (934)
|+..|+++.+. .|+ +...+..+...|.+.|++++|.+.|+++..
T Consensus 86 A~~~~~~al~~--~p~----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 86 AIEHYRHALRL--KPD----------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--Ccc----------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666665543 222 223345555555666666666666655544
Q ss_pred C-CC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHH
Q 046194 523 R-RD-EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGS 600 (934)
Q Consensus 523 ~-p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 600 (934)
. |+ ...+..+...+...|++++|.+.|+++.... +-+..++..+...+...|++++|...++.+++... .+...+.
T Consensus 130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 207 (388)
T 1w3b_A 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYI 207 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHH
Confidence 2 32 3344555555566666666666666665531 12345555666666666666666666666665432 2456677
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC--CC-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhC
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMP--VR-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAG 676 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 676 (934)
.+...+...|++++|...|++.. .| +..+|..+...|...|++++|++.|+++.+. .|+ ..++..+..++.+.|
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC
Confidence 77888888888888888887664 23 4668888999999999999999999999984 455 567888888999999
Q ss_pred cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHH
Q 046194 677 LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKA 754 (934)
Q Consensus 677 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~ 754 (934)
++++|.+.|+++.+. .+++...|..+..++.+.|++++|.+.++++ ...| +..+|..+...+... |+.++|...
T Consensus 286 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~ 361 (388)
T 1w3b_A 286 SVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ--GKLQEALMH 361 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT--TCCHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 999999999999874 3445788999999999999999999999987 5555 477889999999998 999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCC
Q 046194 755 ANMLFEMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 755 ~~~~~~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
++++++++|+++..|..++.+|...|+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999887764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=8.4e-22 Score=218.43 Aligned_cols=350 Identities=12% Similarity=0.091 Sum_probs=294.0
Q ss_pred HHHHhCCccHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 046194 431 GAFADSEALVSEAVKYYLDMRRAGWSPNGV-TFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGE 509 (934)
Q Consensus 431 ~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 509 (934)
..+.+.|++ ++|++.+.++.+. .|+.. .+..+...+...|+++.+...+...++.. +.+...+..+...|.+.|+
T Consensus 7 ~~~~~~g~~-~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 7 HREYQAGDF-EAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCH-HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCH-HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 345566776 7777777776654 34433 34444555666777888877777766643 4567788999999999999
Q ss_pred HHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhchhhHHHHHHHHHH
Q 046194 510 MDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH-FTFATVLSACASVATLERGMEVHAC 586 (934)
Q Consensus 510 ~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~ 586 (934)
+++|...|+++... | +..+|..+..++.+.|++++|++.|.++... .|+. ..+..+...+...|++++|.+.+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999998763 5 4557999999999999999999999999885 4654 4566677788889999999999999
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-h
Q 046194 587 GVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-H 662 (934)
Q Consensus 587 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 662 (934)
+++.. +.+..+++.+...|.+.|++++|...|+++.. | +...|..+...+...|++++|+..|++..+. .|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 98863 23678899999999999999999999998863 3 4558888999999999999999999999884 565 6
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 046194 663 VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-P-ITPNSLIWRTVLGA 739 (934)
Q Consensus 663 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~ 739 (934)
.++..+..++...|++++|.+.|+.+.+ +.|+ ...|..++.+|.+.|++++|.+.++++ . .+++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 7888899999999999999999999987 3454 778999999999999999999999988 3 34568899999999
Q ss_pred HHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 740 CCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 740 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+... |+.++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+
T Consensus 315 ~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQ--GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTT--TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHc--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999 9999999999999999999999999999999999999999999998874
No 7
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=1.2e-16 Score=189.04 Aligned_cols=380 Identities=9% Similarity=0.046 Sum_probs=281.2
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCC
Q 046194 360 LISTLSSCASLGWIMLGQQIHGEGLKLG--LDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSE 437 (934)
Q Consensus 360 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 437 (934)
.....+++...|...++.++++.++-.+ +..+....+.|+.+..+. +..+......+...-+ ...+...+.+.|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3445666667777777777777776332 123445566666666665 4455555555544222 344666777888
Q ss_pred ccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh-ccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046194 438 ALVSEAVKYYLDMRRAGWSPNGVTFINILAAAS-SFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKI 516 (934)
Q Consensus 438 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 516 (934)
.+ ++|..+|++.. .+...+..+. ..++++.|.++...+ .++.+|..+..++.+.|++++|.+.
T Consensus 1064 ly-EEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1064 LF-EEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CH-HHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88 88888888741 1222222222 667777777777654 3467888999999999999999999
Q ss_pred HHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcH
Q 046194 517 FARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDV 596 (934)
Q Consensus 517 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~ 596 (934)
|.+. . |...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++.
T Consensus 1128 YiKA--d-D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1128 YIKA--D-DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred HHhc--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 9664 3 77888889999999999999999998777654 33333335788888888887544332 2 3355
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhC
Q 046194 597 VIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAG 676 (934)
Q Consensus 597 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 676 (934)
..+..+.+.|...|++++|...|... ..|..+..+|.+.|++++|++.+++. .+..+|..+-.+|...|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhh
Confidence 56667889999999999999999885 48999999999999999999999876 34578888889999999
Q ss_pred cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHH
Q 046194 677 LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKA 754 (934)
Q Consensus 677 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~ 754 (934)
.+..|...... +.-++..+..++..|.+.|.+++|+.+++.. +++|. ...|.-|.-.+.+...+++.++.+.
T Consensus 1265 Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1265 EFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999886543 3346677889999999999999999999876 66654 4467666666666655788888888
Q ss_pred HHHHHhcCC-----CCCchHHHHHHHHHcCCChHHHHHH
Q 046194 755 ANMLFEMEP-----QNAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 755 ~~~~~~~~p-----~~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
+.....+.| ++...|.-++-+|.+.|+|+.|..+
T Consensus 1339 f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1339 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 888888877 7888999999999999999999854
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.2e-20 Score=214.11 Aligned_cols=439 Identities=10% Similarity=-0.010 Sum_probs=240.1
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHH
Q 046194 324 SWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYA 403 (934)
Q Consensus 324 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 403 (934)
.|......+.+.|++++|+..|+++.+.+ ||..++..+..++...|+++.|...+..+++.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34555566667777777777777776643 566666666666666777777777776666654 334556677777777
Q ss_pred hcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHH
Q 046194 404 DAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQ 480 (934)
Q Consensus 404 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 480 (934)
+.|++++|...|+++.. .+......++..+...... ..+.+.+..+...+..|+...+..-...............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAM-SKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHH-HHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 77777777777766533 2223333333333332222 3333333322222222222211111100011111111111
Q ss_pred HHHHHHHhcC---------CCchhHHHHHHHHHHh---cCCHHHHHHHHHhhcc--------CC--------CcchHHHH
Q 046194 481 VHAQVIKYNV---------ANETTIENALLSCYGK---CGEMDDCEKIFARMSE--------RR--------DEVSWNSM 532 (934)
Q Consensus 481 i~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~--------~p--------~~~~~~~l 532 (934)
+...+..... +.+...+..+...+.. .|++++|...|+++.. .| +...|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1111111000 1112333333333333 6777777777766554 11 23456666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 046194 533 ISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRI 612 (934)
Q Consensus 533 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 612 (934)
...+...|++++|+..|+++.... |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 667777777777777777776643 335566666666667777777777776666542 22455666666677777777
Q ss_pred HHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 613 DYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 613 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
++|...|+... ..+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777776553 2244566666667777777777777777766642 2234556666666777777777777777665
Q ss_pred HhhCCCCC----cccHHHHHHHHhh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 690 QVYGLIPQ----LEQFSCMVDLLGR---AGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 690 ~~~~~~p~----~~~y~~li~~l~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
+...-.|+ ...|..+...+.+ .|++++|.+.++++ ...| +..+|..+...+... |+.+.|...++++++
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ--EDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHH
Confidence 53222222 2266667777777 77777777777665 2233 455666666666666 777777777777777
Q ss_pred cCCCCCchHHHH
Q 046194 761 MEPQNAVNYVLL 772 (934)
Q Consensus 761 ~~p~~~~~y~~l 772 (934)
++|+++..+..+
T Consensus 478 ~~~~~~~~~~~~ 489 (514)
T 2gw1_A 478 LARTMEEKLQAI 489 (514)
T ss_dssp HCSSHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 777665555444
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=6.8e-20 Score=207.45 Aligned_cols=316 Identities=10% Similarity=0.071 Sum_probs=213.4
Q ss_pred chHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046194 425 SWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCY 504 (934)
Q Consensus 425 ~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 504 (934)
.|..+...+.+.|++ ++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+++.+ +.+...+..+..+|
T Consensus 28 ~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 28 KHLELGKKLLAAGQL-ADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 344444444444444 55555555544321 1122233333333333333333333333333322 12234455666666
Q ss_pred HhcCCHHHHHHHHHhhccC-CC-c---chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHH
Q 046194 505 GKCGEMDDCEKIFARMSER-RD-E---VSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLER 579 (934)
Q Consensus 505 ~~~g~~~~A~~~~~~~~~~-p~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 579 (934)
.+.|++++|...|+++... |+ . ..|..++..+...+ +......+...|++++
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCHHH
Confidence 6666666666666666553 22 2 34444433311111 1111223455666666
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHC
Q 046194 580 GMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLD 656 (934)
Q Consensus 580 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 656 (934)
|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+.+.. .+..+|..+...|...|++++|+..|+++.+
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK- 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 666666666542 23667788888999999999999999988763 4677899999999999999999999999987
Q ss_pred CCCCChhh-HHHH------------HHHHHhhCcHHHHHHHHHHhHHhhCCCCC-----cccHHHHHHHHhhcCChHHHH
Q 046194 657 GPLPDHVT-FVGV------------LSACSHAGLVDEGFKHFKSMSQVYGLIPQ-----LEQFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 657 g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~l~~~g~~~~A~ 718 (934)
..|+... +..+ ...|.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++|.
T Consensus 240 -~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 240 -LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp -HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred -hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4566444 3333 67899999999999999999874 455 458899999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 719 EFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 719 ~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
+.++++ ...| +..+|..+..+|... |+++.|...++++++++|+++..+..++.
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIE--EMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 999987 4455 688999999999999 99999999999999999999999999993
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.3e-20 Score=210.58 Aligned_cols=424 Identities=9% Similarity=-0.071 Sum_probs=314.2
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhC
Q 046194 360 LISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADS 436 (934)
Q Consensus 360 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 436 (934)
+...-..+...|+++.|...+..+++.. |+...+..+..+|.+.|++++|...|+++.+ .+..+|..+...|.+.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 4445566778899999999999999876 6888999999999999999999999987753 3567889999999999
Q ss_pred CccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHH---HHHHHhcCCHHHH
Q 046194 437 EALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENAL---LSCYGKCGEMDDC 513 (934)
Q Consensus 437 g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A 513 (934)
|++ ++|+..|+++...+. ++......++..+........+.+.+..+...+..|+....... ............+
T Consensus 87 g~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 87 GKF-ADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TCH-HHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred hhH-HHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999 999999999988753 34444444444443333333333323222221111111100000 0111111112222
Q ss_pred HHHHHhhccC--------C-CcchHHHHHHHHHh---cCChhHHHHHHHHHHH-----cCCCC--------CHhHHHHHH
Q 046194 514 EKIFARMSER--------R-DEVSWNSMISGYIH---NELLPKAMNLVWFMMQ-----RGQRL--------DHFTFATVL 568 (934)
Q Consensus 514 ~~~~~~~~~~--------p-~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p--------~~~t~~~ll 568 (934)
...+...... | +...|......+.. .|++++|+..|+++.. ....| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 2222222221 1 23344444444444 8999999999999987 32222 345677778
Q ss_pred HHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHH
Q 046194 569 SACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDK 645 (934)
Q Consensus 569 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 645 (934)
..+...|+++.|...+..+.+.... ...+..+...|...|++++|...|+.+.. .+..+|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999987644 88888999999999999999999998753 356688999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 646 ALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 646 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
|+..|+++.+.. +.+...+..+...+...|++++|..+|+.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999853 224667888888999999999999999999874 2334778999999999999999999999887
Q ss_pred ---CCCCC----HHHHHHHHHHHHh---ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 725 ---PITPN----SLIWRTVLGACCR---ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 725 ---~~~p~----~~~~~~ll~~~~~---~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+..|+ ..+|..+...+.. . |+.+.|...+++++++.|+++..+..++.+|...|++++|.+.+++..+
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTV--ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCT--THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhc--CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 23333 4488899999998 8 9999999999999999999999999999999999999999999998875
No 11
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=2.3e-15 Score=178.38 Aligned_cols=689 Identities=11% Similarity=0.075 Sum_probs=349.2
Q ss_pred hHHHHHHhhcCChhhHHHhhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcccHHHHHHHhhhcCCCC
Q 046194 24 NTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSG 103 (934)
Q Consensus 24 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 103 (934)
+..+..+++.|.++.+...-.+.. ...-|..|+..+.+. +++.|.++-..+.... |....+..+...+.+. +.
T Consensus 486 ~Kvi~~l~~~gq~~ki~~Y~~~~~--~~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~--~~ 558 (1630)
T 1xi4_A 486 NKVIQCFAETGQVQKIVLYAKKVG--YTPDWIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEY--NL 558 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHhccC--CCccHHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhc--Cc
Confidence 345555555555555555543321 133366666666654 4666766655555442 2344566666666666 77
Q ss_pred hhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCCCCcc---cHHHHHHHHHcCCCchHHHHHHHH
Q 046194 104 FKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLI---SWNSIISVYSQRGDTISVFKLFSR 180 (934)
Q Consensus 104 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~ 180 (934)
+..+..+.-.+++.+-..+..+.+.|+.+=.. ..+.-|..+| ..+.. .|..+-.-|-++|-++.|++.|.+
T Consensus 559 iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~--~~pqvadail----~~~~fthyd~~~IA~LCE~aGl~qrale~y~d 632 (1630)
T 1xi4_A 559 IQQCTAFLLDALKNNRPSEGPLQTRLLEMNLM--HAPQVADAIL----GNQMFTHYDRAHIAQLCEKAGLLQRALEHFTD 632 (1630)
T ss_pred HHHHHHHHHHHHhCCChhhhhHhHHHHHHhhc--cchhHHHHHH----hcCccccccHHHHHHHHHHcCcHHHHHHhcCC
Confidence 77777777777777766666666766665333 2333333333 33444 488899999999999999999987
Q ss_pred HHHcc--CCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhh
Q 046194 181 MQREG--FRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMI 258 (934)
Q Consensus 181 m~~~g--~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 258 (934)
+..-. + +......=..++.-++++ ..+.+.+.++.|.+.+++-+....-....-|...=-.+...++|++..
T Consensus 633 ~~dikR~~---~~~~~~~~~~l~~~fg~l---~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~ 706 (1630)
T 1xi4_A 633 LYDIKRAV---VHTHLLNPEWLVNYFGSL---SVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFK 706 (1630)
T ss_pred HHHHHHHh---hccCcCCHHHHHHHHhcC---CHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhc
Confidence 64321 1 011111122333433332 223377888888876655554433333333333333445555555543
Q ss_pred hcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCC---------------CC--
Q 046194 259 QKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIG---------------KD-- 321 (934)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---------------~~-- 321 (934)
.-+. +. -..+.+ -.+..|+.+....|.+.++.|++.+.+++.++-.- +|
T Consensus 707 ~~eg-----l~-------y~l~si--v~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~ 772 (1630)
T 1xi4_A 707 SFEG-----LF-------YFLGSI--VNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQL 772 (1630)
T ss_pred chhh-----HH-------HHHHhh--ccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCC
Confidence 2110 00 000111 12456888889999999999999999888766411 11
Q ss_pred -------ccc-------------HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH-------------HHhh
Q 046194 322 -------SVS-------------WNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTL-------------SSCA 368 (934)
Q Consensus 322 -------~~~-------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-------------~a~~ 368 (934)
... ....|..|++.-++..+-.+...+.+ +.-+......+| ..+-
T Consensus 773 pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld--~d~~e~~ik~ll~~v~~~~~~~~lv~~~e 850 (1630)
T 1xi4_A 773 PLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLD--VDCSEDVIKNLILVVRGQFSTDELVAEVE 850 (1630)
T ss_pred CceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhc--CCCCHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 110 12234445544444444433333333 122222333333 3333
Q ss_pred ccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHH-------------------------HHHHhhC-----
Q 046194 369 SLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRC-------------------------LKVFFLM----- 418 (934)
Q Consensus 369 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-------------------------~~~f~~~----- 418 (934)
+.+++..-...++.-+..| ..++.++|+|...|...++-.+. .-.+++-
T Consensus 851 krnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~e 929 (1630)
T 1xi4_A 851 KRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLE 929 (1630)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHH
Confidence 3444444444455555555 45778899988888755432211 1111110
Q ss_pred -------------------CCCCccch--------------------------------HHHHHHHHhCCccHHHHHHHH
Q 046194 419 -------------------PEHDQVSW--------------------------------NSVIGAFADSEALVSEAVKYY 447 (934)
Q Consensus 419 -------------------~~~~~~~~--------------------------------~~li~~~~~~g~~~~~A~~l~ 447 (934)
.+.|...| ...+.+|...|.+ .+|++++
T Consensus 930 li~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp-~EaieLL 1008 (1630)
T 1xi4_A 930 LINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLP-NELIELL 1008 (1630)
T ss_pred HHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCH-HHHHHHH
Confidence 00122222 3455678888888 9999999
Q ss_pred HHHHHcCC--CCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--
Q 046194 448 LDMRRAGW--SPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-- 523 (934)
Q Consensus 448 ~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 523 (934)
++....+- .-+...-+.++.+..+. +...+.+......+.- ..-+...+...|.+++|..+|++....
T Consensus 1009 EKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IYkKa~~~~~ 1080 (1630)
T 1xi4_A 1009 EKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIFRKFDVNTS 1080 (1630)
T ss_pred HHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHHHHcCCHHH
Confidence 98874321 01112222333333222 3333333333322110 122334444455555555555544210
Q ss_pred ----------------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHH
Q 046194 524 ----------------------RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGM 581 (934)
Q Consensus 524 ----------------------p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 581 (934)
-+..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|+++++.
T Consensus 1081 A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1081 AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHH
Confidence 03344555555555555555555555331 23344444555555555555555
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 046194 582 EVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD 661 (934)
Q Consensus 582 ~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 661 (934)
+.+..+.+.. +++.+.+.++..|+|.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence 5555444432 22222233555555555554322222 2233334444445555555555555555542
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046194 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACC 741 (934)
Q Consensus 662 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 741 (934)
..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|...... +..++..+..++..|.
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQ 1291 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHH
Confidence 14445555555555555555554433 1234444444455555555555544432 2223334445666666
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC--ChHHHHHH
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGG--KWEDVAKA 788 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g--~~~~a~~~ 788 (934)
.. |.+++|...++..+.++|.+.+.|.-|+.+|++.. +..|+.+.
T Consensus 1292 ~~--G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1292 DR--GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred Hc--CCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66 77777777777777777777777777777776653 44444444
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=8.7e-18 Score=194.85 Aligned_cols=426 Identities=10% Similarity=0.011 Sum_probs=213.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHh
Q 046194 325 WNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYAD 404 (934)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 404 (934)
|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|.+.+..+++.. +.+...+..+...|.+
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 4444455555555555555555555432 1233444444445555555555555555555443 2345667777777788
Q ss_pred cCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHc------CCCCCcccHHHHHHHHhccCCchHH
Q 046194 405 AGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRA------GWSPNGVTFINILAAASSFSMGKLG 478 (934)
Q Consensus 405 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~a 478 (934)
.|++++|...|+.+. .+....+..+..+...+.. .+|+..++++... ...|+...+.. +....+.+.+
T Consensus 106 ~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 179 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLN-KQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHLE 179 (537)
T ss_dssp HTCHHHHHHHHHHHC------------CHHHHHHH-HHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHHH
T ss_pred cCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHHH
Confidence 888888888776442 2222222233444444555 7778888777543 12233222222 2222222211
Q ss_pred HHHHHHHHHhcCCCc-hhHHHHHHHHHHhc--------CCHHHHHHHHHhhccC-CC--------cchHHHHHHHHHhcC
Q 046194 479 HQVHAQVIKYNVANE-TTIENALLSCYGKC--------GEMDDCEKIFARMSER-RD--------EVSWNSMISGYIHNE 540 (934)
Q Consensus 479 ~~i~~~~~~~g~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~-p~--------~~~~~~li~~~~~~g 540 (934)
...+... ....+. ......+...+... |++++|..+|+++... |+ ..+|..+...+...|
T Consensus 180 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTS--SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCC--CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhc--cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 1111000 000111 11223333333222 3667777777776654 33 123455555666677
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhc
Q 046194 541 LLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFD 620 (934)
Q Consensus 541 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 620 (934)
++++|+..|++.... .|+...+..+...+...|+++.|.+.+..+.+... .+..++..+...|...|++++|...|+
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 777777777777664 34455666666666667777777777766665432 245556666666666666666666666
Q ss_pred cCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC
Q 046194 621 LMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP 696 (934)
Q Consensus 621 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 696 (934)
.... .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|.+.|+.+.+...-.+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 5542 23445666666666666666666666666653 233 34555555566666666666666666554311111
Q ss_pred C----cccHHHHHHHHhhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 697 Q----LEQFSCMVDLLGRA----------GELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 697 ~----~~~y~~li~~l~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
+ ...+..+..+|.+. |++++|.+.++++ ...| +..+|..+...+... |+.+.|...++++++
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM--EKIDEAIELFEDSAI 490 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--ccHHHHHHHHHHHHH
Confidence 1 11122333444444 5555555555544 2222 344455555555555 555555555555555
Q ss_pred cCCCCCc
Q 046194 761 MEPQNAV 767 (934)
Q Consensus 761 ~~p~~~~ 767 (934)
+.|.++.
T Consensus 491 ~~~~~~~ 497 (537)
T 3fp2_A 491 LARTMDE 497 (537)
T ss_dssp HC--CHH
T ss_pred hCCCcHH
Confidence 5555443
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=3.9e-18 Score=192.92 Aligned_cols=293 Identities=11% Similarity=0.042 Sum_probs=220.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 046194 494 TTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSAC 571 (934)
Q Consensus 494 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 571 (934)
...+..+...|.+.|++++|..+|+++... | +..+|..+..+|...|++++|+..|+++...+ +.+..++..+..++
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 344555566666666666666666655442 2 45556666666666666666666666665542 22345555556666
Q ss_pred hchhhHHHHHHHHHHHHHhCCCCcH---hHHHHH------------HHHHHhcCCHHHHHHHhccCCC---CCcccccHH
Q 046194 572 ASVATLERGMEVHACGVRACLEFDV---VIGSAL------------VDMYSKCGRIDYASRFFDLMPV---RNVYSWNSM 633 (934)
Q Consensus 572 ~~~~~~~~a~~i~~~~~~~~~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 633 (934)
...|++++|.+.++.+.+.... +. ..+..+ ...|.+.|++++|...|+.+.. .+...|..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 6666666666666666553211 22 333333 4458899999999999998763 466789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHH--------
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCM-------- 704 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l-------- 704 (934)
...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|+..|+.+.+ +.|+ ...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998853 34577899999999999999999999999986 3455 4444444
Q ss_pred ----HHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 705 ----VDLLGRAGELDKIEEFINKM-PITPN-----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 705 ----i~~l~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
+..+.+.|++++|.+.++++ ...|+ ...|..+...+... |+.+.|...++++++++|+++..|..++.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD--EKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 88999999999999999988 44555 44788888889888 99999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHh
Q 046194 775 MYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 775 ~~~~~g~~~~a~~~~~~m~~ 794 (934)
+|...|++++|.+.++.+.+
T Consensus 338 ~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999998875
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=1.4e-17 Score=193.04 Aligned_cols=433 Identities=10% Similarity=0.007 Sum_probs=302.0
Q ss_pred ccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHH
Q 046194 231 LYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDS 310 (934)
Q Consensus 231 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 310 (934)
...|..+...+.+.|++++|...|+++.+.+ +.++.++..+...|.+.|++++|
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~g~~~~A 78 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--------------------------PNEPVFYSNISACYISTGDLEKV 78 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--------------------------CCCcHHHHHHHHHHHHcCCHHHH
Confidence 3456778889999999999999999987643 23566777888899999999999
Q ss_pred HHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhC
Q 046194 311 RSVFRFMIG---KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLG 387 (934)
Q Consensus 311 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 387 (934)
.+.|+++.+ .+...|..+...|...|++++|+..|+.+. ..|+... ..+..+...+....+...+..+++..
T Consensus 79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~ 153 (537)
T 3fp2_A 79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKD 153 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999988743 367788899999999999999999996432 2333221 12233334444566777777776541
Q ss_pred C--CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc---chHHHHHHHHhC--------CccHHHHHHHHHHHHHcC
Q 046194 388 L--DSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQV---SWNSVIGAFADS--------EALVSEAVKYYLDMRRAG 454 (934)
Q Consensus 388 ~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~--------g~~~~~A~~l~~~m~~~g 454 (934)
. .+........+..|....+.+.+...+......+.. .+..+...+... +++ ++|+.+|+++.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~-~~A~~~~~~~l~~- 231 (537)
T 3fp2_A 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLL-TKSTDMYHSLLSA- 231 (537)
T ss_dssp -----CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHH-HHHHHHHHHHHC--
T ss_pred ccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHH-
Confidence 1 111111233344455667777777777666654433 333333333222 244 6667777666543
Q ss_pred CCCCccc-HHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHH
Q 046194 455 WSPNGVT-FINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSM 532 (934)
Q Consensus 455 ~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l 532 (934)
.|+... +..+ ...+..+...+...|++++|...|++.... |+...|..+
T Consensus 232 -~p~~~~~~~~~----------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 282 (537)
T 3fp2_A 232 -NTVDDPLRENA----------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL 282 (537)
T ss_dssp --CCCHHHHHHH----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred -CCCcchhhHHH----------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHH
Confidence 222211 1000 123455667788889999999999887663 676778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 046194 533 ISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRI 612 (934)
Q Consensus 533 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 612 (934)
...|...|++++|+..|++..... +.+..++..+...+...|+++.|.+.+..+.+... .+...+..+...|.+.|++
T Consensus 283 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~ 360 (537)
T 3fp2_A 283 ALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKF 360 (537)
T ss_dssp HHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 888889999999999999988753 33567788888888899999999999998888642 2567888899999999999
Q ss_pred HHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhh---------
Q 046194 613 DYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPL-PD----HVTFVGVLSACSHA--------- 675 (934)
Q Consensus 613 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~--------- 675 (934)
++|...|+.+.. .+...|..+...|...|++++|+..|+++.+.... ++ ...+......+...
T Consensus 361 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 440 (537)
T 3fp2_A 361 TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440 (537)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CC
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 999999998763 35668999999999999999999999998874311 11 11133444567777
Q ss_pred -CcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 046194 676 -GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN 729 (934)
Q Consensus 676 -g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~ 729 (934)
|++++|...|+...+. .+.+...+..+..+|.+.|++++|.+.+++. ...|+
T Consensus 441 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 441 EEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999874 2234788999999999999999999999987 44444
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=3.1e-16 Score=171.06 Aligned_cols=321 Identities=9% Similarity=0.026 Sum_probs=209.2
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcC
Q 046194 463 INILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNE 540 (934)
Q Consensus 463 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g 540 (934)
..+...+...|+++.|...+..+++.. +.+...+..+...|...|++++|...|++.... | +...|..+...|...|
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 334444445555555555555554432 123344444555555555555555555544331 2 3334444455555555
Q ss_pred ChhHHHHHHHHHHHcCCCC---CH-hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 046194 541 LLPKAMNLVWFMMQRGQRL---DH-FTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 541 ~~~~A~~l~~~m~~~g~~p---~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 616 (934)
++++|+..|++.... .| +. ..+..+. .... ......+...+...|++++|.
T Consensus 86 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~-------~~~~----------------~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKS--NPSEQEEKEAESQLV-------KADE----------------MQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp CHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH-------HHHH----------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHHHhc--CCcccChHHHHHHHH-------HHHH----------------HHHHHHHHHHHHHccCHHHHH
Confidence 555555555554442 22 11 1111110 0000 001122356788889999999
Q ss_pred HHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhC
Q 046194 617 RFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYG 693 (934)
Q Consensus 617 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 693 (934)
+.|+.+.. .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+...+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 217 (359)
T 3ieg_A 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-- 217 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 98887652 355678888888999999999999999988753 334667788888888999999999999888763
Q ss_pred CCCC-cccHH------------HHHHHHhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhccCCCcHHHHHH
Q 046194 694 LIPQ-LEQFS------------CMVDLLGRAGELDKIEEFINKM-PITPN-S----LIWRTVLGACCRANCRKTELGRKA 754 (934)
Q Consensus 694 ~~p~-~~~y~------------~li~~l~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~~~~~~~~a~~~ 754 (934)
.|+ ...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+... |+.+.|...
T Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~ 294 (359)
T 3ieg_A 218 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD--EKPVEAIRI 294 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc--cCHHHHHHH
Confidence 344 22222 3367789999999999999887 33444 2 2344566777778 999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHH
Q 046194 755 ANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKE 834 (934)
Q Consensus 755 ~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~ 834 (934)
++++++.+|+++..+..++.+|...|++++|.+.++...+ ..|....++..+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------------HNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------TCTTCHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999998874 34556667777777
Q ss_pred HHHHHHH
Q 046194 835 LNQKMRD 841 (934)
Q Consensus 835 l~~~m~~ 841 (934)
+...+++
T Consensus 349 ~~~~~~~ 355 (359)
T 3ieg_A 349 AQRLLKQ 355 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666653
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.72 E-value=1.7e-15 Score=165.14 Aligned_cols=322 Identities=10% Similarity=0.055 Sum_probs=231.4
Q ss_pred ccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHH
Q 046194 423 QVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLS 502 (934)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 502 (934)
+..|..+...+.+.|++ ++|+..|++..+.. +.+...+..+...+...|+++.|...+..+++.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQL-ADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566667777788888 88888888887753 2345677778888889999999999999988764 335678899999
Q ss_pred HHHhcCCHHHHHHHHHhhccC-C----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhH
Q 046194 503 CYGKCGEMDDCEKIFARMSER-R----DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATL 577 (934)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~-p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 577 (934)
.|.+.|++++|...|++.... | +...|..+...+. ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999998775 4 2233333311000 00111222334444555
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHH
Q 046194 578 ERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMK 654 (934)
Q Consensus 578 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 654 (934)
+.|.+.+..+.+.. +.+...+..+...|...|++++|...|+.+.. .+..+|..+...|...|++++|+..|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555544432 22455666677777777777777777776542 345577788888888888888888888888
Q ss_pred HCCCCCChhh-HH------------HHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc-----ccHHHHHHHHhhcCChHH
Q 046194 655 LDGPLPDHVT-FV------------GVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL-----EQFSCMVDLLGRAGELDK 716 (934)
Q Consensus 655 ~~g~~p~~~t-~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~li~~l~~~g~~~~ 716 (934)
+. .|+... +. .+...+...|++++|...++.+.+. .|+. ..+..+..++.+.|++++
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 74 455322 22 2255688899999999999998874 2442 335568889999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 717 IEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 717 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
|.+.+++. ...| +..+|..+...+... |+.+.|...++++++++|+++..+..+..++..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIE--EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999987 4445 678899999999998 999999999999999999999888887776543
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=1.2e-15 Score=163.28 Aligned_cols=344 Identities=13% Similarity=0.114 Sum_probs=147.1
Q ss_pred hccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHH
Q 046194 302 AKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHG 381 (934)
Q Consensus 302 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 381 (934)
-+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|+++++...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37899999999999997664 999999999999999999999975 3688899999999999999999999888
Q ss_pred HHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCccc
Q 046194 382 EGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVT 461 (934)
Q Consensus 382 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t 461 (934)
...+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|.+ ++|..+|..+ ..
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~y-eeA~~~Y~~a---------~n 150 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMY-DAAKLLYNNV---------SN 150 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CT-TTHHHHHHHT---------TC
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCH-HHHHHHHHHh---------hh
Confidence 88774 45578899999999999999998888753 6667888888888888888 8888888865 23
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCC
Q 046194 462 FINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNEL 541 (934)
Q Consensus 462 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~ 541 (934)
| ..|++++.+.|++++|.+.+..+ . ++.+|..++.+|...|+
T Consensus 151 ~-----------------------------------~~LA~~L~~Lg~yq~AVea~~KA--~-~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 151 F-----------------------------------GRLASTLVHLGEYQAAVDGARKA--N-STRTWKEVCFACVDGKE 192 (449)
T ss_dssp H-----------------------------------HHHHHHHHTTTCHHHHHHHHHHH--T-CHHHHHHHHHHHHHTTC
T ss_pred H-----------------------------------HHHHHHHHHhccHHHHHHHHHHc--C-CchhHHHHHHHHHHcCc
Confidence 3 56667777777777777777766 2 66777777777777777
Q ss_pred hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh--cCCHHHHHHHh
Q 046194 542 LPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSK--CGRIDYASRFF 619 (934)
Q Consensus 542 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A~~~~ 619 (934)
++.|......+ .+.|+. ...++..|.+.|.++++..+++...... +-....++-|.-+|+| -+++.+..+.|
T Consensus 193 f~lA~~~~l~L---~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 193 FRLAQMCGLHI---VVHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHTTTTT---TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 77774443321 123333 3356666777777777777777666433 3345556666666664 45677777777
Q ss_pred ccCCC--------CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhhCcHHHHHHHHHHh
Q 046194 620 DLMPV--------RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD---HVTFVGVLSACSHAGLVDEGFKHFKSM 688 (934)
Q Consensus 620 ~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m 688 (934)
..-.. .+...|.-+...|...++++.|... |.+. .|+ ...|.-++.--.....+-+|..++-
T Consensus 267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl-- 339 (449)
T 1b89_A 267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL-- 339 (449)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--
Confidence 65432 3567899999999999999998873 4442 334 3444444432222222334444432
Q ss_pred HHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCC
Q 046194 689 SQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMP 725 (934)
Q Consensus 689 ~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 725 (934)
. -.+...+-|..++...=+.+.+..++++.+
T Consensus 340 -~-----~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 340 -E-----FKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp -H-----HCGGGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred -h-----cCHHHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 2 233446777777776677777777777764
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.3e-15 Score=163.99 Aligned_cols=286 Identities=9% Similarity=-0.025 Sum_probs=225.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046194 491 ANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVL 568 (934)
Q Consensus 491 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 568 (934)
+.+..+...+...+...|++++|.++|+++... | +...+..++..+...|++++|+.+++++.... +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344555667777788888888888888887653 3 55567777788888888888888888887752 23456677777
Q ss_pred HHHhchh-hHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChH
Q 046194 569 SACASVA-TLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGD 644 (934)
Q Consensus 569 ~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 644 (934)
..+...| ++++|.+.+..+.+.. +.+...+..+...|...|++++|...|+.+.. .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7788888 8888888888887753 22567788888899999999999999887753 34567778888999999999
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCC-------CCCcccHHHHHHHHhhcCChHH
Q 046194 645 KALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGL-------IPQLEQFSCMVDLLGRAGELDK 716 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-------~p~~~~y~~li~~l~~~g~~~~ 716 (934)
+|+..|+++.+. .|+ ...+..+...+...|++++|...|+...+...- ......+..+..+|.+.|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999885 444 667888888899999999999999988774211 3336788899999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH-cCCCh
Q 046194 717 IEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA-SGGKW 782 (934)
Q Consensus 717 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~-~~g~~ 782 (934)
|.+.+++. ...| +..+|..+...+... |+.+.|...++++++++|+++..+..++.+|. ..|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLM--GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHH--TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHh--ccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999887 3334 567888888888888 99999999999999999999999999999884 44544
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=5.9e-16 Score=165.51 Aligned_cols=349 Identities=13% Similarity=0.079 Sum_probs=165.4
Q ss_pred hcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHH
Q 046194 404 DAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHA 483 (934)
Q Consensus 404 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 483 (934)
+.|++++|.++++++..|+ +|..|..++.+.|++ ++|++.|.+ .+|..+|..++.++...|+++++...+.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~-~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMV-KEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCH-HHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999996664 999999999999999 999999965 3677899999999999999999999888
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH
Q 046194 484 QVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT 563 (934)
Q Consensus 484 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 563 (934)
...+. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp -------------------------CHHHHTTTTT----CC----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 77774 4557888999999999999999988875 368889999999999999999999999977 47
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCCh
Q 046194 564 FATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHG 643 (934)
Q Consensus 564 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 643 (934)
|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 999999999999999999999987 378999999999999999999988877655 3333344688999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHH--hhCcHHHHHHHHHHhHHhhCCCC------CcccHHHHHHHHhhcCCh
Q 046194 644 DKALTLFSQMKLDGPLPD-HVTFVGVLSACS--HAGLVDEGFKHFKSMSQVYGLIP------QLEQFSCMVDLLGRAGEL 714 (934)
Q Consensus 644 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~~p------~~~~y~~li~~l~~~g~~ 714 (934)
++|+.+++..... .|. ...|+-+.-+++ +-+++.+.++.|..- -+++| +..+|.-++..|...|++
T Consensus 224 eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 224 EELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 9999999998764 343 444555544454 455666666666533 35666 488999999999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC----------CchHHHHHHHHHcCCChH
Q 046194 715 DKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN----------AVNYVLLANMYASGGKWE 783 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~----------~~~y~~l~~~~~~~g~~~ 783 (934)
+.|...+-+- +..=+... +.....+- .+.|.--++..--++-.|.- ..-+...+.++.+.|.+.
T Consensus 299 d~A~~tm~~h~~~a~~~~~---f~~~~~kv--~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~ 373 (449)
T 1b89_A 299 DNAIITMMNHPTDAWKEGQ---FKDIITKV--ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLP 373 (449)
T ss_dssp HHHHHHHHHSTTTTCCHHH---HHHHHHHC--SSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhCChhhhhhHH---HHHHHhch--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcH
Confidence 9998766554 22112222 22233333 55555555444444444421 011223344445555555
Q ss_pred HHHHHHHHHH
Q 046194 784 DVAKARKAMK 793 (934)
Q Consensus 784 ~a~~~~~~m~ 793 (934)
-+...++.+.
T Consensus 374 l~~~yl~~v~ 383 (449)
T 1b89_A 374 LVKPYLRSVQ 383 (449)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.67 E-value=3.8e-15 Score=163.19 Aligned_cols=278 Identities=10% Similarity=-0.028 Sum_probs=220.6
Q ss_pred HHhcCCHHHHHH-HHHhhccC----C--CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhh
Q 046194 504 YGKCGEMDDCEK-IFARMSER----R--DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVAT 576 (934)
Q Consensus 504 ~~~~g~~~~A~~-~~~~~~~~----p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 576 (934)
|.-.|++++|.. .|++.... | +...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 444577888887 77755442 2 45678888888999999999999999988753 3456778888888889999
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccH---------------HHHHHH
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNS---------------MISGYA 638 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 638 (934)
++.|...+..+++.. +.+..++..+...|...|++++|.+.|+.+.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999888864 33677888899999999999999999987653 2 2223332 244444
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCCh
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPD---HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGEL 714 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~ 714 (934)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+.+. .|+ ...|..++.++.+.|++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCH
Confidence 899999999999999985 454 677888899999999999999999999873 344 77899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHcCCC
Q 046194 715 DKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN-----------AVNYVLLANMYASGGK 781 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~y~~l~~~~~~~g~ 781 (934)
++|.+.++++ ...| +..+|..+...+... |+++.|...+++++++.|++ +..|..++.+|...|+
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINL--GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 9999999987 4444 577899999999999 99999999999999999988 7889999999999999
Q ss_pred hHHHHHHHH
Q 046194 782 WEDVAKARK 790 (934)
Q Consensus 782 ~~~a~~~~~ 790 (934)
+++|..+.+
T Consensus 346 ~~~A~~~~~ 354 (368)
T 1fch_A 346 SDAYGAADA 354 (368)
T ss_dssp GGGHHHHHT
T ss_pred hHhHHHhHH
Confidence 999988755
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.66 E-value=1e-14 Score=156.89 Aligned_cols=262 Identities=11% Similarity=0.039 Sum_probs=224.7
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
+...+..+...+...|++++|+++|+++.... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 66778888889999999999999999998763 3344566677788899999999999999998864 336778888999
Q ss_pred HHHhcC-CHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHH
Q 046194 605 MYSKCG-RIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDE 680 (934)
Q Consensus 605 ~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 680 (934)
.|...| ++++|.+.|+.... .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 99999999998753 356689999999999999999999999999853 2235667778889999999999
Q ss_pred HHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhccCCCcH
Q 046194 681 GFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PI----------TPNSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 681 a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~~~~~~~~~~~~ 749 (934)
|.+.|+...+. .+.+...+..+...+.+.|++++|.+.++++ .. ..+..+|..+...+... |+.+
T Consensus 178 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~ 253 (330)
T 3hym_B 178 AERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL--KKYA 253 (330)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh--cCHH
Confidence 99999999762 2334788999999999999999999999876 11 33467899999999999 9999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
.|...+++++++.|+++..+..++.+|...|++++|.+.+++..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877665
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=1.7e-13 Score=156.29 Aligned_cols=352 Identities=8% Similarity=-0.012 Sum_probs=245.1
Q ss_pred cCChHHHHHHHhhCCC-CCccchHHHHHHHHh----CCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhc----cCCc
Q 046194 405 AGYLSRCLKVFFLMPE-HDQVSWNSVIGAFAD----SEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASS----FSMG 475 (934)
Q Consensus 405 ~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~ 475 (934)
.+++++|...|++..+ .+...+..|...|.. .++. ++|++.|++..+.| +...+..+-..+.. .++.
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDY-AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 4455555555544322 233344444444444 4555 55555555555443 22333334444444 4566
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCcchHHHHHHHHHh----cCChhHHHH
Q 046194 476 KLGHQVHAQVIKYNVANETTIENALLSCYGK----CGEMDDCEKIFARMSERRDEVSWNSMISGYIH----NELLPKAMN 547 (934)
Q Consensus 476 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~ 547 (934)
+.|...+....+.| +...+..|..+|.. .++.++|.+.|++..+..+..++..+...|.. .+++++|++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 66666666665554 34455666667766 67888888888877665567777777777777 788888888
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhc----hhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHh
Q 046194 548 LVWFMMQRGQRLDHFTFATVLSACAS----VATLERGMEVHACGVRACLEFDVVIGSALVDMYSK----CGRIDYASRFF 619 (934)
Q Consensus 548 l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~ 619 (934)
.|++....| +...+..+...+.. .++.++|.+.+....+.+ +...+..|..+|.. .++.++|...|
T Consensus 209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 888877764 34455555555554 678888888888877754 44566667777777 88999999999
Q ss_pred ccCCC-CCcccccHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhC---cHHHHHHHHHHhHH
Q 046194 620 DLMPV-RNVYSWNSMISGYARH-----GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAG---LVDEGFKHFKSMSQ 690 (934)
Q Consensus 620 ~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~ 690 (934)
+...+ .+..++..+...|... +++++|+..|++..+.| +...+..+...+...| +.++|.++|+...+
T Consensus 283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 87764 3555777788888877 89999999999999865 3455666666676656 78999999999887
Q ss_pred hhCCCCCcccHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----ccCCCcHHHHHHHHHHHhcC
Q 046194 691 VYGLIPQLEQFSCMVDLLGR----AGELDKIEEFINKMPITPNSLIWRTVLGACCR----ANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 691 ~~~~~p~~~~y~~li~~l~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~ 762 (934)
. .+...+..|..+|.. .+++++|.+.+++.-...++..+..|...+.. . +|.++|...++++.+..
T Consensus 360 ~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~--~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 360 K----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE--RDYVQAWAWFDTASTND 433 (490)
T ss_dssp T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHCC
Confidence 3 457788889999988 89999999999987323467788888888877 6 89999999999999998
Q ss_pred CC---CCchHHHHHHHHHc
Q 046194 763 PQ---NAVNYVLLANMYAS 778 (934)
Q Consensus 763 p~---~~~~y~~l~~~~~~ 778 (934)
|+ ++.....|+.++..
T Consensus 434 ~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 434 MNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHTTSCHH
T ss_pred CCCcCCHHHHHHHHhcCHh
Confidence 54 67777777776554
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.64 E-value=4e-15 Score=162.94 Aligned_cols=260 Identities=9% Similarity=-0.059 Sum_probs=207.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...++.+++.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45668888888888999999999998888753 3356778888888888899999999998888764 235778888999
Q ss_pred HHHhcCCHHHHHHHhccCCC--CC-----------cccccHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChhhHHHHHH
Q 046194 605 MYSKCGRIDYASRFFDLMPV--RN-----------VYSWNSMISGYARHGHGDKALTLFSQMKLDGPL-PDHVTFVGVLS 670 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 670 (934)
.|...|++++|...|+++.. |+ ...+..+...|...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988763 21 123344588899999999999999999985321 14678888999
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCc
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKT 748 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 748 (934)
.+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|.+.++++ ...| +..+|..+...+... |+.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~ 297 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL--GAY 297 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCC
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC--CCH
Confidence 999999999999999999874 2334788999999999999999999999987 4455 478899999999999 999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHHHcCCChHHHHHHHH
Q 046194 749 ELGRKAANMLFEMEPQ------------NAVNYVLLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 749 ~~a~~~~~~~~~~~p~------------~~~~y~~l~~~~~~~g~~~~a~~~~~ 790 (934)
++|...+++++++.|+ +...+..|+.++...|+.+.+.++.+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999887 36779999999999999999877643
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=6.2e-13 Score=153.38 Aligned_cols=209 Identities=7% Similarity=-0.021 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh-------cCCHH-------HHHHHhccCCC---C-CcccccHHHHHHHH
Q 046194 578 ERGMEVHACGVRACLEFDVVIGSALVDMYSK-------CGRID-------YASRFFDLMPV---R-NVYSWNSMISGYAR 639 (934)
Q Consensus 578 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~ 639 (934)
+.+..+++.+++.. +.+..++..++..+.+ .|+++ +|..+|++... | +...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36667788777752 3367778888877775 68887 89999987653 4 45688899999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHH-HhhcCChH
Q 046194 640 HGHGDKALTLFSQMKLDGPLPDH--VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDL-LGRAGELD 715 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~-l~~~g~~~ 715 (934)
.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|.++|+...+. .|. ...|...+.+ +...|+.+
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChh
Confidence 9999999999999998 46653 46888888888899999999999998763 343 3333332222 33689999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc----hHHHHHHHHHcCCChHHHHHHH
Q 046194 716 KIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV----NYVLLANMYASGGKWEDVAKAR 789 (934)
Q Consensus 716 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~y~~l~~~~~~~g~~~~a~~~~ 789 (934)
+|.++|++. ...| ++..|..++...... |+.+.|...++++++..|.++. .+...+......|+.+++.++.
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~--g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHL--NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhC--CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999976 3445 578899999988888 9999999999999998877665 6777788888899999999988
Q ss_pred HHHHh
Q 046194 790 KAMKE 794 (934)
Q Consensus 790 ~~m~~ 794 (934)
+.+.+
T Consensus 487 ~r~~~ 491 (530)
T 2ooe_A 487 KRRFT 491 (530)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=1.5e-13 Score=158.50 Aligned_cols=409 Identities=11% Similarity=0.079 Sum_probs=272.5
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHH
Q 046194 321 DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMS-SNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALL 399 (934)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 399 (934)
|...|..++. +.+.|++++|..+|+++.+. .| +...|...+..+.+.|+.+.|+.+++.+++.. |++..|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 6677888887 47788888888888888773 34 34456677777777788888888888887764 5666777666
Q ss_pred HH-HHhcCChHHHHH----HHhhCC------CCCccchHHHHHHHHh---------CCccHHHHHHHHHHHHHcCCCCCc
Q 046194 400 SL-YADAGYLSRCLK----VFFLMP------EHDQVSWNSVIGAFAD---------SEALVSEAVKYYLDMRRAGWSPNG 459 (934)
Q Consensus 400 ~~-y~~~g~~~~A~~----~f~~~~------~~~~~~~~~li~~~~~---------~g~~~~~A~~l~~~m~~~g~~p~~ 459 (934)
.. ....|+.+.|.+ +|+... ..+...|...+....+ .|+. ++|..+|++..+. |+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI-TAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH-HHHHHHHHHHTTS---CCT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH-HHHHHHHHHHHhc---hhh
Confidence 53 334566666554 555431 1244567666665543 5666 7777777777652 322
Q ss_pred ccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhh------cc------CCC--
Q 046194 460 VTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARM------SE------RRD-- 525 (934)
Q Consensus 460 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~------~p~-- 525 (934)
. ...+...+.. ++.. .| ..+...++. .+.++++.|..++..+ .+ .|+
T Consensus 163 ~-~~~~~~~~~~---~e~~---------~~----~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 163 N-IEQLWRDYNK---YEEG---------IN----IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp T-HHHHHHHHHH---HHHH---------HC----HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred h-HHHHHHHHHH---HHHh---------hc----hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 1 1111111110 0000 00 000011111 1234456666555541 11 122
Q ss_pred ------cchHHHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc-------hhhHH------
Q 046194 526 ------EVSWNSMISGYIHN----ELL----PKAMNLVWFMMQRGQRLDHFTFATVLSACAS-------VATLE------ 578 (934)
Q Consensus 526 ------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~------ 578 (934)
...|...+.-...+ ++. ++|..+|++.... .+-+...|......+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 23565555433222 222 3778889888775 22355666666666654 68876
Q ss_pred -HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CC-c-ccccHHHHHHHHcCChHHHHHHHHHH
Q 046194 579 -RGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--RN-V-YSWNSMISGYARHGHGDKALTLFSQM 653 (934)
Q Consensus 579 -~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~-~~~~~li~~~~~~g~~~~A~~l~~~m 653 (934)
.|..+++.+++.-.+.+...+..++..+.+.|++++|..+|+.+.. |+ . ..|...+..+.+.|+.++|.++|++.
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8899999888632344688899999999999999999999998753 43 2 47999999999999999999999999
Q ss_pred HHCCCCCC-hhhHHHHHHH-HHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC----CC
Q 046194 654 KLDGPLPD-HVTFVGVLSA-CSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM----PI 726 (934)
Q Consensus 654 ~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m----~~ 726 (934)
.+. .|+ ...|...... +...|+.++|..+|+...+.. |+ ...|..+++.+.+.|+.++|..+|++. +.
T Consensus 383 l~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 383 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred Hhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 985 343 2333322222 336899999999999998743 54 788999999999999999999999987 33
Q ss_pred CCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 727 TPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 727 ~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
.|+ ..+|...+.....+ |+.+.+..+.+++.+..|++
T Consensus 458 ~~~~~~~lw~~~~~~e~~~--G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNI--GDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHS--SCHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCchh
Confidence 443 55899999988889 99999999999999999854
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=7.8e-16 Score=176.94 Aligned_cols=164 Identities=10% Similarity=0.136 Sum_probs=135.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH
Q 046194 490 VANETTIENALLSCYGKCGEMDDCEKIFARMSE------RRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT 563 (934)
Q Consensus 490 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 563 (934)
...-..+||+||++|+++|++++|.++|++|.+ .||++|||+||.||++.|+.++|.++|++|...|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 334456899999999999999999999988753 38999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhh-HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCC-----CcccccHHHHHH
Q 046194 564 FATVLSACASVAT-LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVR-----NVYSWNSMISGY 637 (934)
Q Consensus 564 ~~~ll~a~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~ 637 (934)
|+++|.++++.|. .+.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+-+.|...|
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999999997 4789999999999999999999999999888887777777776655421 123444566666
Q ss_pred HHcCC---------hHHHHHHHHHH
Q 046194 638 ARHGH---------GDKALTLFSQM 653 (934)
Q Consensus 638 ~~~g~---------~~~A~~l~~~m 653 (934)
.+.+. .++-.++|++=
T Consensus 283 s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 283 AKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred ccCCCCcCccccCCHHHHHHHHHHH
Confidence 66552 24555666553
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.8e-13 Score=155.57 Aligned_cols=366 Identities=12% Similarity=0.019 Sum_probs=200.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC------------CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcC---C
Q 046194 391 DVSVSNALLSLYADAGYLSRCLKVFFLMPE------------HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAG---W 455 (934)
Q Consensus 391 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g---~ 455 (934)
....||.|...|...|+.++|++.|++..+ ...++|+.+...|...|++ ++|...+++..... .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~-~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL-SDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHhHhcc
Confidence 345677788888888888888777743210 1233455555555555555 55555555443210 0
Q ss_pred CCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc--CCHHHHHHHHHhhcc-CCC-cchHHH
Q 046194 456 SPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKC--GEMDDCEKIFARMSE-RRD-EVSWNS 531 (934)
Q Consensus 456 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~-~p~-~~~~~~ 531 (934)
.|. ......++..+..++.+. +++++|...|++..+ .|+ ...+..
T Consensus 129 ~~~-------------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~ 177 (472)
T 4g1t_A 129 SPY-------------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177 (472)
T ss_dssp CSS-------------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ccc-------------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 000 001122333333333333 346666666666544 232 333333
Q ss_pred HHHH---HHhcCChhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHh----chhhHHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 046194 532 MISG---YIHNELLPKAMNLVWFMMQRGQRL-DHFTFATVLSACA----SVATLERGMEVHACGVRACLEFDVVIGSALV 603 (934)
Q Consensus 532 li~~---~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 603 (934)
+... +...++.++|++.|++.... .| +...+..+...+. ..++.++|.+.++.+.+.. +.+..++..+.
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg 254 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHH
Confidence 3333 23345566666666666553 23 2333333332222 2345566666666665543 22455566666
Q ss_pred HHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCC
Q 046194 604 DMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYAR-------------------HGHGDKALTLFSQMKLDGPLPD 661 (934)
Q Consensus 604 ~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~ 661 (934)
..|.+.|++++|...|+...+ | +..+|..+...|.. .+..++|+..|++..+.. +.+
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 333 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNL 333 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTT
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cch
Confidence 777777777777777766542 2 23344444444432 234678888888888743 233
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc----cHHHHHH-HHhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 046194 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE----QFSCMVD-LLGRAGELDKIEEFINKM-PITPNSLIWRT 735 (934)
Q Consensus 662 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~y~~li~-~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 735 (934)
..++..+...+...|++++|...|++..+ +.|+.. .+..+.. .+...|+.++|++.+++. .+.|+...+.
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~- 409 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE- 409 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH-
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH-
Confidence 56788888899999999999999999876 334322 2333333 345778999999999886 6677654332
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEE
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWV 806 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 806 (934)
+..+.++..+++.++.+|+++..|..|+.+|...|++++|.+.+++..+.+.......+|+
T Consensus 410 ----------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 ----------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ----------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 3344566778889999999999999999999999999999999998887654433333443
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.61 E-value=9.5e-14 Score=145.82 Aligned_cols=268 Identities=9% Similarity=0.015 Sum_probs=211.6
Q ss_pred HHHhcCCHHHHHHHHHhhccC-CCc--chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHH
Q 046194 503 CYGKCGEMDDCEKIFARMSER-RDE--VSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLER 579 (934)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~-p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 579 (934)
-....|+++.|...++..... |+. .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 345578899999988876654 322 3445677889999999999886654 245667788888888888899999
Q ss_pred HHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046194 580 GMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGP 658 (934)
Q Consensus 580 a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 658 (934)
|.+.++.++..+..| +...+..+...|...|++++|.+.|+. ..+...+..++..|.+.|++++|++.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 999999988876545 566777788999999999999999998 456778999999999999999999999999985
Q ss_pred CCChhhHHHHH----HHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHH
Q 046194 659 LPDHVTFVGVL----SACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLI 732 (934)
Q Consensus 659 ~p~~~t~~~ll----~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~ 732 (934)
.|+.. ...+. ..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|.+.+++. ...| ++.+
T Consensus 160 ~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 57753 22232 3334569999999999999985 4456888999999999999999999999987 5555 5778
Q ss_pred HHHHHHHHHhccCCCcHH-HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH
Q 046194 733 WRTVLGACCRANCRKTEL-GRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAK 787 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 787 (934)
|..++..+... |+.++ +...++++++++|+++... ++..+.+.++++..
T Consensus 237 l~~l~~~~~~~--g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHL--GKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 99999888888 88865 6789999999999997654 44555555665543
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.61 E-value=2.9e-14 Score=156.15 Aligned_cols=278 Identities=13% Similarity=0.048 Sum_probs=155.8
Q ss_pred hcCChHHHHH-HHhhCCC--C-----CccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCc
Q 046194 404 DAGYLSRCLK-VFFLMPE--H-----DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMG 475 (934)
Q Consensus 404 ~~g~~~~A~~-~f~~~~~--~-----~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 475 (934)
..|++++|.. .|++... + +...|..+...+.+.|++ ++|+..|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~--------------------- 94 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDL-PNAVLLFEAAVQQD--------------------- 94 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCH-HHHHHHHHHHHHSC---------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhC---------------------
Confidence 3455566655 5553322 1 234455555555666665 66666665555431
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046194 476 KLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMM 553 (934)
Q Consensus 476 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 553 (934)
+.+...+..+...|.+.|++++|...|++.... | +..+|..+...|...|++++|++.|+++.
T Consensus 95 ---------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 95 ---------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp ---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223445566777777788888888887776552 3 56677777888888888888888888877
Q ss_pred HcCCCCCHh-HHHH---------------HHHHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHH
Q 046194 554 QRGQRLDHF-TFAT---------------VLSACASVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 554 ~~g~~p~~~-t~~~---------------ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~ 616 (934)
... |+.. .+.. .+..+...|++++|...+..+.+..... +..++..+...|.+.|++++|.
T Consensus 160 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 160 RYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 643 3221 1111 1233336677777777777766643321 4566666666666666666666
Q ss_pred HHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh
Q 046194 617 RFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY 692 (934)
Q Consensus 617 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 692 (934)
..|+.+.. .+..+|..+...|...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...|+.+.+..
T Consensus 238 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 66665542 23445666666666666666666666666653 333 4455556666666666666666666655421
Q ss_pred CCC--C-------CcccHHHHHHHHhhcCChHHHHHHHH
Q 046194 693 GLI--P-------QLEQFSCMVDLLGRAGELDKIEEFIN 722 (934)
Q Consensus 693 ~~~--p-------~~~~y~~li~~l~~~g~~~~A~~~~~ 722 (934)
.-. | ....|..+..+|.+.|+.++|..+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 000 0 02445555555555555555555444
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=5.8e-16 Score=178.03 Aligned_cols=150 Identities=14% Similarity=0.109 Sum_probs=111.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHH
Q 046194 526 EVSWNSMISGYIHNELLPKAMNLVWFMMQ---RGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSAL 602 (934)
Q Consensus 526 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 602 (934)
..+||+||++|++.|+.++|.++|.+|.+ .|+.||.+||+++|.+|++.|++++|.++|++|.+.|+.||+.+||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 467788888887777777777777777777777777777766666665
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHG-DKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
|++ +++.|+. ++|.++|++|.+.|+.||.+||+++++++.+.+-++..
T Consensus 207 I~g-------------------------------lcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 207 LQC-------------------------------MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHH-------------------------------HHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHH-------------------------------HHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 554 4555553 67888999999999999999999999877775444444
Q ss_pred HHHHHHhHHhhCCCCC------cccHHHHHHHHhhcC
Q 046194 682 FKHFKSMSQVYGLIPQ------LEQFSCMVDLLGRAG 712 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~------~~~y~~li~~l~~~g 712 (934)
+.+.. ++.|+ ..+...|.+.|.+.+
T Consensus 256 ----rkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 256 ----HKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp ----GGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred ----HHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 44433 33333 455566788888766
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.60 E-value=1.6e-12 Score=148.38 Aligned_cols=351 Identities=10% Similarity=-0.008 Sum_probs=287.9
Q ss_pred CccchHHHHHHHHh----CCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhc----cCCchHHHHHHHHHHHhcCCCc
Q 046194 422 DQVSWNSVIGAFAD----SEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASS----FSMGKLGHQVHAQVIKYNVANE 493 (934)
Q Consensus 422 ~~~~~~~li~~~~~----~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~ 493 (934)
+..++..+...|.. .++. ++|+..|++..+.| +...+..+-..+.. .++.+.|.+.+....+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~-~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDL-TQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCH-HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 44455555555665 7888 99999999998764 44566666677777 889999999999998875 5
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhHHH
Q 046194 494 TTIENALLSCYGK----CGEMDDCEKIFARMSERRDEVSWNSMISGYIH----NELLPKAMNLVWFMMQRGQRLDHFTFA 565 (934)
Q Consensus 494 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 565 (934)
...+..|..+|.. .+++++|...|++..+..+...+..+...|.. .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667778888988 88999999999998776577788888888887 789999999999998875 566777
Q ss_pred HHHHHHhc----hhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHhccCCC-CCcccccHHHHH
Q 046194 566 TVLSACAS----VATLERGMEVHACGVRACLEFDVVIGSALVDMYSK----CGRIDYASRFFDLMPV-RNVYSWNSMISG 636 (934)
Q Consensus 566 ~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 636 (934)
.+-..+.. .++.++|.+.+....+.+ +......|..+|.. .++.++|...|+...+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 789999999999998865 56677788888886 8999999999998764 455677778888
Q ss_pred HHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-----CcHHHHHHHHHHhHHhhCCCCCcccHHHHHHH
Q 046194 637 YAR----HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHA-----GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDL 707 (934)
Q Consensus 637 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 707 (934)
|.. .++.++|+..|++..+.| +...+..+...+... ++.++|..+|+...+. .+...+..|..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 887 899999999999998865 445566677777776 8999999999998873 345678888888
Q ss_pred HhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc--
Q 046194 708 LGRAG---ELDKIEEFINKMPITPNSLIWRTVLGACCR----ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS-- 778 (934)
Q Consensus 708 l~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~-- 778 (934)
|.+.| ++++|.+++++.-...++..+..|...+.. . ++.++|...++++.+.. ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~--~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVK--KDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 88767 889999999987333578888899988888 6 89999999999998864 57889999999999
Q ss_pred --CCChHHHHHHHHHHHhCC
Q 046194 779 --GGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 779 --~g~~~~a~~~~~~m~~~~ 796 (934)
.++.++|.+.+++..+.+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 899999999999988765
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=4.9e-14 Score=151.29 Aligned_cols=255 Identities=8% Similarity=-0.076 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 046194 529 WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSK 608 (934)
Q Consensus 529 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 608 (934)
|..+...+...|++++|+.+|+++.... +.+...+..+..++...|++++|.+.+..+.+.. +.+...+..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3444444444455555555554444431 1133344444444444555555555555444432 1234455555666666
Q ss_pred cCCHHHHHHHhccCCC--C-CcccccHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046194 609 CGRIDYASRFFDLMPV--R-NVYSWNSM--------------IS-GYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLS 670 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 670 (934)
.|++++|.+.|+.+.. | +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 6666666666655432 1 11222222 22 3677889999999999999853 335677888888
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCc
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKT 748 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 748 (934)
.+...|++++|.++++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+... |+.
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--g~~ 256 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM--SQY 256 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--ccH
Confidence 999999999999999999873 2234778999999999999999999999987 3444 577899999999999 999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHHHcCCChHHHHHHHH
Q 046194 749 ELGRKAANMLFEMEPQ------------NAVNYVLLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 749 ~~a~~~~~~~~~~~p~------------~~~~y~~l~~~~~~~g~~~~a~~~~~ 790 (934)
+.|...+++++++.|+ ++..+..++.+|...|++++|.++++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999 78899999999999999999988755
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.56 E-value=9.5e-14 Score=145.83 Aligned_cols=244 Identities=11% Similarity=-0.001 Sum_probs=198.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 046194 534 SGYIHNELLPKAMNLVWFMMQRGQRLDH--FTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGR 611 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 611 (934)
.-....|++.+|+..+++... ..|+. .....+.+++...|+++.|...++. .-+|+...+..+...|...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 345568999999998877543 34543 3556678899999999999875543 245677888899999999999
Q ss_pred HHHHHHHhccCC----CC-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHH
Q 046194 612 IDYASRFFDLMP----VR-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFK 686 (934)
Q Consensus 612 ~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 686 (934)
.++|.+.++++. .| +...+..+...|.+.|++++|++.|++ ..+...+..+...+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999864 24 445677778899999999999999987 3556778888889999999999999999
Q ss_pred HhHHhhCCCCCcccH---HHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 687 SMSQVYGLIPQLEQF---SCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 687 ~m~~~~~~~p~~~~y---~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
.+.+. .|+.... ...+..+...|++++|.++|+++ ..+++...|+.+..++... |++++|+..+++++++
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ--GRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh
Confidence 99874 4663211 23345555669999999999998 3345788899999999999 9999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCChHH-HHHHHHHHHh
Q 046194 762 EPQNAVNYVLLANMYASGGKWED-VAKARKAMKE 794 (934)
Q Consensus 762 ~p~~~~~y~~l~~~~~~~g~~~~-a~~~~~~m~~ 794 (934)
+|+++..+..++.++...|++++ +.++++++.+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999987 5678777764
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.56 E-value=8.7e-14 Score=152.23 Aligned_cols=231 Identities=10% Similarity=0.023 Sum_probs=194.4
Q ss_pred CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHH
Q 046194 560 DHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISG 636 (934)
Q Consensus 560 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 636 (934)
+...+......+.+.|++++|...++.+++.. +.+..++..+...|.+.|++++|...|+++.. .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557888889999999999999999999864 33688899999999999999999999998763 356799999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh-hhH----------HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHH
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPDH-VTF----------VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMV 705 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~----------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 705 (934)
|...|++++|+..|+++.+. .|+. ..+ ..+...+...|++++|..+|+++.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999984 4542 222 2346788999999999999999988532222578899999
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChH
Q 046194 706 DLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWE 783 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~ 783 (934)
.+|.+.|++++|.+.++++ ...| +..+|..+...+... |+++.|...+++++++.|+++..|..++.+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG--DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999987 3444 578999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 046194 784 DVAKARKAMKEA 795 (934)
Q Consensus 784 ~a~~~~~~m~~~ 795 (934)
+|.+.++++.+.
T Consensus 299 ~A~~~~~~al~~ 310 (365)
T 4eqf_A 299 EAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.52 E-value=1.3e-12 Score=140.09 Aligned_cols=258 Identities=10% Similarity=-0.019 Sum_probs=162.7
Q ss_pred ccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHH
Q 046194 423 QVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLS 502 (934)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 502 (934)
...|..+...+...|++ ++|+.+|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 63 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANL-AEAALAFEAVCQAA------------------------------------PEREEAWRSLGL 63 (327)
T ss_dssp SSCHHHHHHHHHHTTCH-HHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccH-HHHHHHHHHHHHhC------------------------------------CCCHHHHHHHHH
Confidence 34455556666666666 66666666665432 123344556666
Q ss_pred HHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHH------------
Q 046194 503 CYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVL------------ 568 (934)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll------------ 568 (934)
.|.+.|++++|...|++.... | +...|..+...|...|++++|++.|+++... .|+.......+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC----------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHH
Confidence 777777777777777766552 3 5556777777777888888888888777764 23222211111
Q ss_pred --HH--HhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcC
Q 046194 569 --SA--CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHG 641 (934)
Q Consensus 569 --~a--~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 641 (934)
.. +...|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|+.+.. .+..+|..+...|...|
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 22 6677888888888887776542 2566677777777777777777777776542 23456677777777777
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-------------cccHHHHHHHH
Q 046194 642 HGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-------------LEQFSCMVDLL 708 (934)
Q Consensus 642 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~~y~~li~~l 708 (934)
++++|+..|+++.+.. +.+..++..+...+...|++++|.+.|+.+.+. .|+ ...|..+..++
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLL 296 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHH
Confidence 7777777777776642 223555666666777777777777777776653 222 44566666666
Q ss_pred hhcCChHHHHHHHHhC
Q 046194 709 GRAGELDKIEEFINKM 724 (934)
Q Consensus 709 ~~~g~~~~A~~~~~~m 724 (934)
.+.|++++|.+++++.
T Consensus 297 ~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 297 NVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHTTCHHHHHHHTTCC
T ss_pred HhcCCHHHHHHHHHHH
Confidence 6666666666666543
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=6.8e-12 Score=142.44 Aligned_cols=388 Identities=11% Similarity=-0.043 Sum_probs=223.3
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCC-CCchhHHHHHHH
Q 046194 322 SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGL-DSDVSVSNALLS 400 (934)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~ 400 (934)
...||.|...+...|++++|++.|++..+. ......... +....+|+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 456899999999999999999999876541 111111111 123345677777
Q ss_pred HHHhcCChHHHHHHHhhCCC-------C----CccchHHHHHHHHh--CCccHHHHHHHHHHHHHcCCCCCcc-cHHHHH
Q 046194 401 LYADAGYLSRCLKVFFLMPE-------H----DQVSWNSVIGAFAD--SEALVSEAVKYYLDMRRAGWSPNGV-TFINIL 466 (934)
Q Consensus 401 ~y~~~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~--~g~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll 466 (934)
+|...|++++|...|++..+ + ...++..+..++.. .+++ ++|++.|++..+. .|+.. .+..+.
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y-~~A~~~~~kal~~--~p~~~~~~~~~~ 179 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQN-ERAKVCFEKALEK--KPKNPEFTSGLA 179 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHH-HHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 77778888777777665421 1 12344444444444 3467 9999999998875 45543 333333
Q ss_pred HH---HhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhhccC-C-CcchHHHHHHHHH
Q 046194 467 AA---ASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGK----CGEMDDCEKIFARMSER-R-DEVSWNSMISGYI 537 (934)
Q Consensus 467 ~a---~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~ 537 (934)
.+ ....++.+.+.+.+...++... .+..++..+...+.. .|+.++|.+.+++.... | +...|..+...|.
T Consensus 180 ~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 180 IASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR 258 (472)
T ss_dssp HHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 33 3456777888888888877643 234445545444443 46778899888876552 3 5667888889999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 046194 538 HNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 538 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 616 (934)
..|++++|+..|.+.... .|+ ..++..+...+...+....+.. ...........+..+.|.
T Consensus 259 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~ 320 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAV 320 (472)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHH
Confidence 999999999999998874 454 3444444333322211111000 000111111223356677
Q ss_pred HHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHHhhCcHHHHHHHHHHhHH
Q 046194 617 RFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHV--TFVGVLS-ACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 617 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~ 690 (934)
..|+... ..+..+|..+...|...|++++|+..|++..+....|... .+..+.. ...+.|+.++|+..|++..+
T Consensus 321 ~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7776654 3456688899999999999999999999999854333221 1222322 24578999999999998876
Q ss_pred hhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 691 VYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 691 ~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
+.|+....... .+.+.+++++. ...| ++.+|..|...+... |+.++|...+++++++.|.+|..
T Consensus 401 ---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~--g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 401 ---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELN--EKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp ---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH--HHCC-------------------
T ss_pred ---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCCcH
Confidence 56664332222 23334444443 2233 567899999999999 99999999999999999999887
Q ss_pred HHHHH
Q 046194 769 YVLLA 773 (934)
Q Consensus 769 y~~l~ 773 (934)
+.-+|
T Consensus 467 ~~~~G 471 (472)
T 4g1t_A 467 SSWNG 471 (472)
T ss_dssp -----
T ss_pred hhcCC
Confidence 76554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=5e-13 Score=133.85 Aligned_cols=194 Identities=15% Similarity=0.073 Sum_probs=155.4
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHH
Q 046194 593 EFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGV 668 (934)
Q Consensus 593 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 668 (934)
+++...+..+...+.+.|++++|...|+.... .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 34666777888889999999999999987653 35568888999999999999999999999984 566 5677888
Q ss_pred HHHHHhh-----------CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 046194 669 LSACSHA-----------GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRT 735 (934)
Q Consensus 669 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 735 (934)
...+... |++++|+..|++..+ +.|+ ...+..+..+|...|++++|.+.+++. .+..++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888899 999999999999987 3565 778889999999999999999999987 22278889999
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+...+... |+.++|...++++++++|+++..+..++.+|...|++++|.+.+++..
T Consensus 157 la~~~~~~--g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSM--GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHH--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999 999999999999999999999999999999999999999988766543
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.9e-12 Score=133.41 Aligned_cols=223 Identities=10% Similarity=0.040 Sum_probs=158.8
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 046194 527 VSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMY 606 (934)
Q Consensus 527 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 606 (934)
..|..+...+...|++++|+..|++..... .+...+..+..++...|++++|...+..+++.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 345566666666667777776666666554 444444444444545555555554444443321000
Q ss_pred HhcCCHHHHHHHhccCCCCC----cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHH
Q 046194 607 SKCGRIDYASRFFDLMPVRN----VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGF 682 (934)
Q Consensus 607 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 682 (934)
.++ ..+|..+...|...|++++|+..|+++.+. .|+. ..+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence 001 345666777777788888888888887773 4553 3455678888888
Q ss_pred HHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 046194 683 KHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLF 759 (934)
Q Consensus 683 ~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 759 (934)
..++.+.. ..|+ ...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+... |+++.|...+++++
T Consensus 126 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al 200 (258)
T 3uq3_A 126 KKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL--MSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--CCHHHHHHHHHHHH
Confidence 88888876 2343 667888888889999999999988887 3333 577888888888888 99999999999999
Q ss_pred hcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 760 EMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 760 ~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++.|+++..|..++.+|...|++++|.+.++...+
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.1e-12 Score=133.05 Aligned_cols=235 Identities=12% Similarity=0.038 Sum_probs=161.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HhHHHH
Q 046194 494 TTIENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ--RLD----HFTFAT 566 (934)
Q Consensus 494 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~t~~~ 566 (934)
...+..+...|.+.|++++|...|++..+. ++...|..+...|...|++++|+..|++...... .|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 456788899999999999999999987542 4778899999999999999999999999876421 112 234444
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHH
Q 046194 567 VLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKA 646 (934)
Q Consensus 567 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 646 (934)
+...+...|++++|...+..+.+.. |+ ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RT-------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CC-------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC---------------------------------ch-------hHHHHHHhHHHHH
Confidence 4444444455555555444444422 11 2345556667777
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 647 LTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 647 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
+..++++... .|+ ...+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|.+.+++.
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777763 344 445666666777777777777777777663 2223666777777788888888888777766
Q ss_pred CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC------CCCCchHHHHHH
Q 046194 725 PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEME------PQNAVNYVLLAN 774 (934)
Q Consensus 725 ~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~y~~l~~ 774 (934)
...| +..+|..+...+... |+.+.|...+++++++. |.+...+..+..
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAV--KEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 3334 466777777777777 88888888888888887 766555555443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=7.1e-12 Score=130.62 Aligned_cols=240 Identities=8% Similarity=-0.150 Sum_probs=176.0
Q ss_pred cCChhHHHHHHHHHHHcCC--CC-CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH
Q 046194 539 NELLPKAMNLVWFMMQRGQ--RL-DHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYA 615 (934)
Q Consensus 539 ~g~~~~A~~l~~~m~~~g~--~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 615 (934)
.|++++|+..|+++..... .| +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4556666666666665421 11 23455555666666666666666666666643 22566777788888888888888
Q ss_pred HHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh
Q 046194 616 SRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVY 692 (934)
Q Consensus 616 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 692 (934)
...|+.... .+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888887653 3566888899999999999999999999998 4677665555666677889999999999888774
Q ss_pred CCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 693 GLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 693 ~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+... |+.+.|...++++++++|++.
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL--GDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCTTC
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCchhH
Confidence 33444444 4777888888999999999886 33342 56788888999988 999999999999999999875
Q ss_pred chHHHHHHHHHcCCChHHHHHHH
Q 046194 767 VNYVLLANMYASGGKWEDVAKAR 789 (934)
Q Consensus 767 ~~y~~l~~~~~~~g~~~~a~~~~ 789 (934)
..+ +.++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 544 66788888898886653
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.39 E-value=6.4e-12 Score=130.81 Aligned_cols=245 Identities=8% Similarity=-0.019 Sum_probs=137.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--hHHHHHHHHHh
Q 046194 497 ENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH--FTFATVLSACA 572 (934)
Q Consensus 497 ~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~ 572 (934)
.......+.+.|++++|...|++..+. | +...|..+...|...|++++|+..|++.......|+. ..+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 345566777788888888888877653 4 4447777777888888888888888887763322221 22555555556
Q ss_pred chhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHH
Q 046194 573 SVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQ 652 (934)
Q Consensus 573 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 652 (934)
..|++++|...+..+.+.... +..++..+...|...|++++|...|++..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al----------------------------- 135 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQI----------------------------- 135 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGC-----------------------------
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHh-----------------------------
Confidence 666666666666665553211 33445555555555555555555555443
Q ss_pred HHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCC---hHHHHHHHHhC---
Q 046194 653 MKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGE---LDKIEEFINKM--- 724 (934)
Q Consensus 653 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~---~~~A~~~~~~m--- 724 (934)
+. .|+ ...+..+...+...+++++|.+.|+.+.+. .|+ ...+..+..++...|+ +++|...+++.
T Consensus 136 --~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 136 --RP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp --CS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred --hc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 32 232 222222221222333555555555554442 222 3344444444444444 44444444433
Q ss_pred -CCCCC------HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 046194 725 -PITPN------SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGG 780 (934)
Q Consensus 725 -~~~p~------~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 780 (934)
...|+ ..+|..+...+... |+.+.|...++++++++|+++.....+..+....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTIN--RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 24566777777777 99999999999999999999887777766655443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.34 E-value=3.1e-11 Score=123.91 Aligned_cols=196 Identities=11% Similarity=0.002 Sum_probs=156.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046194 596 VVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSAC 672 (934)
Q Consensus 596 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 672 (934)
...+..+...|...|++++|...|+.+.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45667777788888888888888887652 345678888888888889999999998888753 23456677777888
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~ 749 (934)
...|++++|.++|+.+.+ .+..|+ ...+..+..+|.+.|++++|.+.++++ ...| +...|..+...+... |+.+
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~ 192 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE--REYV 192 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TCHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--CCHH
Confidence 888999999999888876 234454 667788888888999999999888876 3334 467788888888888 8999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.|...++++++..|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999988888999999999999999999888888753
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.32 E-value=5.5e-11 Score=119.44 Aligned_cols=196 Identities=11% Similarity=-0.029 Sum_probs=143.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA 671 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 671 (934)
+...+..+...|...|++++|.+.|+.+.. .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455566667777777777777777776542 345567777777788888888888888877742 2245567777777
Q ss_pred HHhh-CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCC
Q 046194 672 CSHA-GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRK 747 (934)
Q Consensus 672 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 747 (934)
+... |++++|..+|+.+.+ .+..|+ ...+..+..++.+.|++++|.+.++++ ...| +...|..+...+... |+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~ 162 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA--GQ 162 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--TC
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc--CC
Confidence 7788 888888888888776 233344 566777788888888888888888776 3334 466777777777777 88
Q ss_pred cHHHHHHHHHHHhcCC-CCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 748 TELGRKAANMLFEMEP-QNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p-~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.+.|...++++++..| +++..+..++.++...|+.++|...++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888888888 7778888888888888888888888777754
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.30 E-value=1.2e-10 Score=119.59 Aligned_cols=208 Identities=11% Similarity=-0.028 Sum_probs=140.7
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 046194 526 EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDM 605 (934)
Q Consensus 526 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 605 (934)
...|..+...|...|++++|+..|+++.... +.+...+..+...+...|++++|.+.+..+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 4567777788888888888888888887642 2233444444444444444444444444443321
Q ss_pred HHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHH
Q 046194 606 YSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKH 684 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 684 (934)
..+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+...+...|++++|..+
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12344556666667777777777777777766333454 45566677777888888888888
Q ss_pred HHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 685 FKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 685 ~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
|+.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +...|..+...+... |+.+.|...++++.++.
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVF--EDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHC
Confidence 8887763 2223667778888888888888888888876 3343 566777777777777 89999999999999999
Q ss_pred CCCCchHH
Q 046194 763 PQNAVNYV 770 (934)
Q Consensus 763 p~~~~~y~ 770 (934)
|+++....
T Consensus 240 p~~~~~~~ 247 (252)
T 2ho1_A 240 PGSLEYQE 247 (252)
T ss_dssp TTSHHHHH
T ss_pred CCCHHHHH
Confidence 98766543
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.30 E-value=7.5e-11 Score=127.97 Aligned_cols=242 Identities=10% Similarity=0.045 Sum_probs=170.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhchhh-HHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 046194 528 SWNSMISGYIHNELLPKAMNLVWFMMQRGQRL-DHFTFATVLSACASVAT-LERGMEVHACGVRACLEFDVVIGSALVDM 605 (934)
Q Consensus 528 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 605 (934)
.|+.+...+.+.|++++|++.|++.+.. .| +...|..+..++...|+ +++|...++.+++.... +...++.+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 3455555555556666666666655553 23 23444455555555554 66666666555554322 56677777777
Q ss_pred HHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh-hCcHHH
Q 046194 606 YSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSH-AGLVDE 680 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~~ 680 (934)
|.+.|++++|+..|+.+.. .+...|..+..++...|++++|+..|+++++. .|+ ...|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 8888888888888887763 45668888888888999999999999999884 555 5678778878877 566566
Q ss_pred H-----HHHHHHhHHhhCCCCC-cccHHHHHHHHhhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhccCC-----
Q 046194 681 G-----FKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAG--ELDKIEEFINKMPITPN-SLIWRTVLGACCRANCR----- 746 (934)
Q Consensus 681 a-----~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~----- 746 (934)
| +..|+...+ +.|+ ...|..+..+|.+.| ++++|.++++++...|+ ...+..|...+... |
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~--~~~~~~ 328 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM--LENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH--HHTTCS
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHH--hccccc
Confidence 6 477777766 4565 678888888888888 68899988888755554 56777888877775 4
Q ss_pred ----CcHHHHHHHHHH-HhcCCCCCchHHHHHHHHHcC
Q 046194 747 ----KTELGRKAANML-FEMEPQNAVNYVLLANMYASG 779 (934)
Q Consensus 747 ----~~~~a~~~~~~~-~~~~p~~~~~y~~l~~~~~~~ 779 (934)
..+.|..+++++ .+++|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258899999999 899999888888877765543
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.30 E-value=2.1e-10 Score=128.63 Aligned_cols=342 Identities=11% Similarity=0.028 Sum_probs=172.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCCh---hHHHH
Q 046194 236 ALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTI---DDSRS 312 (934)
Q Consensus 236 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~ 312 (934)
.+...+.+.|++++|.++|++..+.+. +..+..|-.+|...|+. ++|..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~----------------------------~~A~~~Lg~~y~~~g~~~d~~~A~~ 59 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY----------------------------SEAQVGLADIQVGTRDPAQIKQAEA 59 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------CTGGGTCC-----------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC----------------------------HHHHHHHHHHHHccCCCCCHHHHHH
Confidence 356777889999999999999865421 11112233455666777 89999
Q ss_pred HHhcCCCCCcccHHHHHHHHHhCC-----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCch---HHHHHHHHHHh
Q 046194 313 VFRFMIGKDSVSWNTMISGLDQNG-----CYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWI---MLGQQIHGEGL 384 (934)
Q Consensus 313 ~f~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~i~~~~~ 384 (934)
.|++..+.+...+..+...+...| ++++|+..|++..+.|... .+..+-..+...+.. ..+.+.+....
T Consensus 60 ~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~ 136 (452)
T 3e4b_A 60 TYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQ 136 (452)
T ss_dssp -----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 999887777788888887666655 7789999999998876332 444444444333322 22334444444
Q ss_pred hhCCCCchhHHHHHHHHHHhcCC----hHHHHHHHhhCCCCCccchHHHHHHHHhCC---ccHHHHHHHHHHHHHcCCCC
Q 046194 385 KLGLDSDVSVSNALLSLYADAGY----LSRCLKVFFLMPEHDQVSWNSVIGAFADSE---ALVSEAVKYYLDMRRAGWSP 457 (934)
Q Consensus 385 ~~g~~~~~~~~~~li~~y~~~g~----~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~~A~~l~~~m~~~g~~p 457 (934)
+.| +......|..+|...+. .+.+..+++.....+..++..|...|.+.| +. ++|++.|++..+.|..
T Consensus 137 ~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~-~~A~~~~~~aa~~g~~- 211 (452)
T 3e4b_A 137 AAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQ-AELLKQMEAGVSRGTV- 211 (452)
T ss_dssp HHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHTTCS-
T ss_pred HCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHHCCCH-
Confidence 433 34456666777777663 444555555555555556667777777666 66 6777777666655421
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhhccCCCcchHHHHH
Q 046194 458 NGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKC----GEMDDCEKIFARMSERRDEVSWNSMI 533 (934)
Q Consensus 458 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~p~~~~~~~li 533 (934)
+...+..|..+|... ++.++|...|+... ..+...+..+.
T Consensus 212 -----------------------------------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg 255 (452)
T 3e4b_A 212 -----------------------------------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLA 255 (452)
T ss_dssp -----------------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 111122344444333 56667777776665 32555566655
Q ss_pred HH-H--HhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchh-----hHHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 046194 534 SG-Y--IHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVA-----TLERGMEVHACGVRACLEFDVVIGSALVDM 605 (934)
Q Consensus 534 ~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 605 (934)
.. | ...+++++|++.|++....| +...+..+-..|. .| +.++|.+.+.... ..++.....|..+
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHH
Confidence 55 3 34667777777777666554 2333333333332 22 4555555554444 1233444444444
Q ss_pred HHh----cCCHHHHHHHhccCCCC-CcccccHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 046194 606 YSK----CGRIDYASRFFDLMPVR-NVYSWNSMISGYAR----HGHGDKALTLFSQMKLDG 657 (934)
Q Consensus 606 y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 657 (934)
|.. ..+.++|...|+...++ +......|...|.. ..+.++|...|++..+.|
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 443 22555555555544322 23334444444432 234555555555555554
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.30 E-value=2.1e-11 Score=124.32 Aligned_cols=195 Identities=9% Similarity=0.059 Sum_probs=133.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA 671 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 671 (934)
....+..+...+...|++++|...|+++.. .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445556666677777777777777776642 245577777778888888888888888887742 2245667777777
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~ 749 (934)
+...|++++|.++|+++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...|..+...+... |+.+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~ 176 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE--GMLD 176 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCCH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc--CCHH
Confidence 88888888888888888763 2234667777888888888888888888876 3333 566777788888887 8888
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.|...++++++..|+++..+..++.+|...|++++|.+.++++.+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 888888888888888888888888888888888888888887765
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.30 E-value=7.7e-11 Score=127.89 Aligned_cols=243 Identities=9% Similarity=0.034 Sum_probs=201.6
Q ss_pred hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC-HHHHHHHhccCCC---CCcccccHHHHHH
Q 046194 562 FTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGR-IDYASRFFDLMPV---RNVYSWNSMISGY 637 (934)
Q Consensus 562 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 637 (934)
..|..+...+...|++++|.+.++.+++... .+..+++.+...|.+.|+ +++|+..|++... .+...|+.+...|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4566666677888999999999999998642 267888999999999997 9999999998863 4567999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhh-cCCh
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGR-AGEL 714 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~-~g~~ 714 (934)
...|++++|+..|+++.+. .|+ ...|..+..++...|++++|+..|+++.+ +.|+ ...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999994 565 67788888999999999999999999987 3455 7889999999999 6676
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhccCC--CcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC-----
Q 046194 715 DKI-----EEFINKM-PITP-NSLIWRTVLGACCRANCR--KTELGRKAANMLFEMEPQNAVNYVLLANMYASGG----- 780 (934)
Q Consensus 715 ~~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g----- 780 (934)
++| ++.+++. .+.| +...|..+...+... | +.+.+...++++ +.+|+++..+..|+++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~--g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR--GLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT--CGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc--CccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 888 4777766 5566 477899999988887 6 789999999998 999999999999999999975
Q ss_pred ----ChHHHHHHHHHH-HhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 046194 781 ----KWEDVAKARKAM-KEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKM 839 (934)
Q Consensus 781 ----~~~~a~~~~~~m-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m 839 (934)
..++|.++++.+ .+ .+|.....|..+......+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~--------------------------~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE--------------------------KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT--------------------------TCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH--------------------------hCchhHHHHHHHHHHHHHH
Confidence 258899998887 42 4566677777766665554
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.29 E-value=2.2e-10 Score=128.48 Aligned_cols=343 Identities=10% Similarity=0.028 Sum_probs=161.7
Q ss_pred cCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHhhCCCCCccchHHHHHHHHhCC-----ccHH
Q 046194 370 LGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYL---SRCLKVFFLMPEHDQVSWNSVIGAFADSE-----ALVS 441 (934)
Q Consensus 370 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~~ 441 (934)
.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+ +. +
T Consensus 16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~-~ 91 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH-H 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH-H
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH-H
Confidence 344444444444444443 222333444555556666 77888877776666666666666555554 55 7
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHH---HHHHHHHHHhcCCCchhHHHHHHHHHHhcCC----HHHHH
Q 046194 442 EAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLG---HQVHAQVIKYNVANETTIENALLSCYGKCGE----MDDCE 514 (934)
Q Consensus 442 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a---~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~----~~~A~ 514 (934)
+|+..|++..+.|... .+..+-..+...+..+.+ .+.+....+.| +......|...|...+. .+.+.
T Consensus 92 ~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 92 EAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 8888888888765322 444555555444443332 23333333333 23444555666666653 34444
Q ss_pred HHHHhhccCCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhC
Q 046194 515 KIFARMSERRDEVSWNSMISGYIHNE---LLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRAC 591 (934)
Q Consensus 515 ~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 591 (934)
.++...... +...+..|...|...| +.++|++.|++....| .++...+..+-..|...
T Consensus 166 ~~~~~a~~~-~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g----------------- 226 (452)
T 3e4b_A 166 RICKAALNT-TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA----------------- 226 (452)
T ss_dssp HHHHHHTTT-CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG-----------------
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC-----------------
Confidence 445444443 4446666666666666 6666776666666654 22222222222223222
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 046194 592 LEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISG-Y--ARHGHGDKALTLFSQMKLDGPLPDHVTFVGV 668 (934)
Q Consensus 592 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 668 (934)
....++.++|...|+.....+...+..|... | ...|++++|+..|++..+.| +...+..|
T Consensus 227 --------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 289 (452)
T 3e4b_A 227 --------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL 289 (452)
T ss_dssp --------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred --------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 0001445555555554442233344444444 2 24566677777777766655 34444445
Q ss_pred HHHHHhhC-----cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046194 669 LSACSHAG-----LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGR----AGELDKIEEFINKMPITPNSLIWRTVLGA 739 (934)
Q Consensus 669 l~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 739 (934)
...|. .| ++++|.++|+... .-+...+..|..+|.. ..++++|.+++++.-...+......|...
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL 363 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 44444 44 6777777766654 2335555566666655 23677777777765212222333344444
Q ss_pred HHhcc--CCCcHHHHHHHHHHHhcCCC
Q 046194 740 CCRAN--CRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 740 ~~~~~--~~~~~~a~~~~~~~~~~~p~ 764 (934)
|..-. ..|.+.|...++++.+..++
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 43210 14677777777777766543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.29 E-value=2.6e-11 Score=123.60 Aligned_cols=215 Identities=9% Similarity=0.026 Sum_probs=137.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
....|..+...+...|++++|+..|++.... .|+ +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHH
Confidence 4455666666777777777777777777653 221 2334444555
Q ss_pred HHHhcCCHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 605 MYSKCGRIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
.|.+.|++++|.+.|+.+. ..+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 5555556666655555443 1244566677777788888888888888887753 33456677777788888999999
Q ss_pred HHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 046194 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLF 759 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 759 (934)
..+++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+... |+.+.|...+++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK--ENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCTTHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--cCHHHHHHHHHHHH
Confidence 9988888763 2234677888888999999999999988877 3333 577888888899888 99999999999999
Q ss_pred hcCCCCCchHHHHHHHHHcCC
Q 046194 760 EMEPQNAVNYVLLANMYASGG 780 (934)
Q Consensus 760 ~~~p~~~~~y~~l~~~~~~~g 780 (934)
+++|+++..+..++.+....|
T Consensus 221 ~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 221 DIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHCTTCHHHHHHHTC------
T ss_pred ccCcchHHHHHHHHHHHhhcc
Confidence 999999888877766554433
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.28 E-value=2.4e-10 Score=118.76 Aligned_cols=229 Identities=10% Similarity=-0.036 Sum_probs=156.5
Q ss_pred cccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCC-Ccc----hHHHHH
Q 046194 459 GVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERR-DEV----SWNSMI 533 (934)
Q Consensus 459 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~----~~~~li 533 (934)
...+......+...|+++.|...+..+++... .+...+..+...|.+.|++++|...|++....| +.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34455667788899999999999999987653 345577888889999999999999999987753 222 388899
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHH-HHHHhcCCH
Q 046194 534 SGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALV-DMYSKCGRI 612 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li-~~y~~~g~~ 612 (934)
..|...|++++|++.|++..... +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+. ..|. .+
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~-- 156 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NK-- 156 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TT--
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HH--
Confidence 99999999999999999998853 2355788888999999999999999999887752 22444444444 3332 22
Q ss_pred HHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCc---HHHHHHHHHHh
Q 046194 613 DYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGL---VDEGFKHFKSM 688 (934)
Q Consensus 613 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m 688 (934)
++++|+..|+++.+. .|+ ...+..+...+...|+ .++|...|++.
T Consensus 157 -----------------------------~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 157 -----------------------------EYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp -----------------------------CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 455555555555552 333 3344444445555555 55555555555
Q ss_pred HHhhCCCCCc------ccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 689 SQVYGLIPQL------EQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 689 ~~~~~~~p~~------~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
.+...-.|+. ..|..+...|.+.|++++|.+.+++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5433222331 35555666666666666666666665
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.27 E-value=4e-10 Score=117.24 Aligned_cols=221 Identities=7% Similarity=-0.066 Sum_probs=110.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----hhhHHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 046194 528 SWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACAS----VATLERGMEVHACGVRACLEFDVVIGSALV 603 (934)
Q Consensus 528 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 603 (934)
++..+...|...|++++|+..|++.... -+...+..+-..+.. .+++++|...+....+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3333444444444444444444444431 112223333333333 344444444444443332 333444444
Q ss_pred HHHHh----cCCHHHHHHHhccCCC-CCcccccHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046194 604 DMYSK----CGRIDYASRFFDLMPV-RNVYSWNSMISGYAR----HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH 674 (934)
Q Consensus 604 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 674 (934)
.+|.. .+++++|...|+...+ .+..++..+...|.. .|++++|+..|++..+.+ +...+..+...+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 44554 5555555555554432 233345555555555 666666666666666643 33444455555555
Q ss_pred ----hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhh----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---
Q 046194 675 ----AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGR----AGELDKIEEFINKM-PITPNSLIWRTVLGACCR--- 742 (934)
Q Consensus 675 ----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~--- 742 (934)
.+++++|..+|+...+. .+...+..+..+|.+ .|++++|.+.+++. ...| ...+..|...+..
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSS
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCC
Confidence 66666666666666552 234455556666666 66666666666554 2222 4455555555555
Q ss_pred -ccCCCcHHHHHHHHHHHhcCCC
Q 046194 743 -ANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 743 -~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
. ++.++|...++++.++.|+
T Consensus 234 ~~--~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 234 VT--RNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SS--CCSTTHHHHHHHHHHHTCH
T ss_pred cc--cCHHHHHHHHHHHHHcCCH
Confidence 4 6666666666666666654
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.26 E-value=1.3e-10 Score=116.23 Aligned_cols=203 Identities=13% Similarity=0.013 Sum_probs=99.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHH
Q 046194 491 ANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD-HFTFATV 567 (934)
Q Consensus 491 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 567 (934)
+++...+..+...+.+.|++++|...|++.... | +...|..+...+.+.|++++|+..|++.... .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 344555666666666677777777766665543 3 4455666666666666666666666666653 232 2333333
Q ss_pred HHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChH
Q 046194 568 LSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGD 644 (934)
Q Consensus 568 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 644 (934)
..++...+. . ... .+...|++++|...|+...+ | +...|..+...|...|+++
T Consensus 80 g~~~~~~~~-------------~--~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 80 SEAYVALYR-------------Q--AED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHH-------------T--CSS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhh-------------h--hhh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence 333333300 0 000 00001444444444444331 2 2334555555566666666
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHh
Q 046194 645 KALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINK 723 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~ 723 (934)
+|+..|++..+.. .+...+..+..++...|++++|+..|+...+. .|+ ...+..+..++.+.|++++|.+.+++
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6666666666544 44555555666666666666666666666552 333 45555666666666666666666554
Q ss_pred C
Q 046194 724 M 724 (934)
Q Consensus 724 m 724 (934)
.
T Consensus 211 ~ 211 (217)
T 2pl2_A 211 E 211 (217)
T ss_dssp -
T ss_pred H
Confidence 3
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.26 E-value=2e-10 Score=115.27 Aligned_cols=208 Identities=10% Similarity=-0.029 Sum_probs=139.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
+...|..+...+...|++++|++.|++..... +.+.. .+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----------------------------------~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNEL-----------------------------------AWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----------------------------------HHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchH-----------------------------------HHHHHHH
Confidence 44556667777777777777777777766542 12233 3444444
Q ss_pred HHHhcCCHHHHHHHhccCC---CCCcccccHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHH
Q 046194 605 MYSKCGRIDYASRFFDLMP---VRNVYSWNSMISGYARH-GHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVD 679 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 679 (934)
.|...|++++|.+.|+.+. ..+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555443 12344566667777777 777778777777776333344 455666777788888888
Q ss_pred HHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhccCCCcHHHHHHHH
Q 046194 680 EGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PIT--PNSLIWRTVLGACCRANCRKTELGRKAAN 756 (934)
Q Consensus 680 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 756 (934)
+|...|+.+.+. .+.+...+..+..++.+.|++++|.+.++++ ... .+...|..+...+... |+.+.+...++
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~ 206 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL--GNAQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 888888887763 2223667778888888888888888888876 333 3556666666666666 89999999999
Q ss_pred HHHhcCCCCCchHHHH
Q 046194 757 MLFEMEPQNAVNYVLL 772 (934)
Q Consensus 757 ~~~~~~p~~~~~y~~l 772 (934)
.+.+..|+++.....+
T Consensus 207 ~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 207 QLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHh
Confidence 9988999887665544
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.25 E-value=3.2e-11 Score=134.09 Aligned_cols=264 Identities=10% Similarity=0.005 Sum_probs=165.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC-CCc-----chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSER-RDE-----VSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSAC 571 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~-p~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 571 (934)
..+...+...|++++|...|++.... |+. ..|..+...|...|++++|+..|++.....
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 116 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA--------------- 116 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------
Confidence 34445566666666666666665442 221 245555566666666666666666554320
Q ss_pred hchhhHHHHHHHHHHHHHhCC-CCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----C----CcccccHHHHHHHHcC
Q 046194 572 ASVATLERGMEVHACGVRACL-EFDVVIGSALVDMYSKCGRIDYASRFFDLMPV-----R----NVYSWNSMISGYARHG 641 (934)
Q Consensus 572 ~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g 641 (934)
.+.+. .....++..+...|...|++++|...|++... . ...+|..+...|...|
T Consensus 117 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 117 ----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp ----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 00000 11233444455555555555555555554331 0 1225556666666666
Q ss_pred C-----------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--
Q 046194 642 H-----------------GDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-- 697 (934)
Q Consensus 642 ~-----------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-- 697 (934)
+ +++|+..+++..+. +-.|. ..++..+...+...|++++|..+|++..+...-.++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 6 67777776665441 11122 235666777788888888888888887663211122
Q ss_pred --cccHHHHHHHHhhcCChHHHHHHHHhC-CC---CC----CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC--
Q 046194 698 --LEQFSCMVDLLGRAGELDKIEEFINKM-PI---TP----NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN-- 765 (934)
Q Consensus 698 --~~~y~~li~~l~~~g~~~~A~~~~~~m-~~---~p----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~-- 765 (934)
...+..+..+|...|++++|.+.+++. .. .+ ...++..+...+... |+.+.|...+++++++.+..
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL--HEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCC
Confidence 236778888888899999888888766 11 11 145677788888888 99999999999888876543
Q ss_pred ----CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 766 ----AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 766 ----~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
...|..++.+|...|++++|.+.++...+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34788999999999999999999887764
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.25 E-value=6.8e-10 Score=115.49 Aligned_cols=223 Identities=9% Similarity=-0.043 Sum_probs=190.6
Q ss_pred CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHhccCCC-CCcccccHHH
Q 046194 560 DHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSK----CGRIDYASRFFDLMPV-RNVYSWNSMI 634 (934)
Q Consensus 560 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 634 (934)
+..++..+-..+...|++++|.+.+..+.+. .+...+..+..+|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4456666777788899999999999999883 356777889999999 9999999999998764 3667888899
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHH
Q 046194 635 SGYAR----HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH----AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVD 706 (934)
Q Consensus 635 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 706 (934)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|.++|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999865 66778888888888 99999999999999873 3 5667888889
Q ss_pred HHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 707 LLGR----AGELDKIEEFINKMPITPNSLIWRTVLGACCR----ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 707 ~l~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
+|.+ .+++++|.+.+++.--..+...+..+...+.. . ++.++|...++++.+..| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~--~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT--KNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC--CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 9988 99999999999987222456778888888888 7 999999999999999977 6789999999999
Q ss_pred ----CCChHHHHHHHHHHHhCC
Q 046194 779 ----GGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 779 ----~g~~~~a~~~~~~m~~~~ 796 (934)
.|++++|.+.+++..+.+
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcC
Confidence 999999999999887654
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=1.7e-10 Score=111.90 Aligned_cols=164 Identities=11% Similarity=0.081 Sum_probs=134.9
Q ss_pred CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHH
Q 046194 626 NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCM 704 (934)
Q Consensus 626 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 704 (934)
+...|..+...|...|++++|++.|++..+. .|+ ...+..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4456777888888888888888888888874 565 566777888888899999999988888763 22336677778
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 046194 705 VDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 782 (934)
...+...+++++|.+.+++. ...| +...|..+...+... |+.++|...++++++++|.++..|..++.+|...|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM--GEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh--CCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 88888899999999888876 3444 467788888888888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 046194 783 EDVAKARKAMKEA 795 (934)
Q Consensus 783 ~~a~~~~~~m~~~ 795 (934)
++|.+.+++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999998887653
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.24 E-value=2.4e-11 Score=137.16 Aligned_cols=205 Identities=8% Similarity=-0.031 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH-HHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHH
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRI-DYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQ 652 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 652 (934)
++.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++..+ | +...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444443332 223667777788888888888 888888887652 3 456888999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhh---------CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc--------CCh
Q 046194 653 MKLDGPLPDHVTFVGVLSACSHA---------GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA--------GEL 714 (934)
Q Consensus 653 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~--------g~~ 714 (934)
..+ +.|+...+..+...+... |++++|++.|++..+. .|+ ...|..+..+|... |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 998 468877888888889898 9999999999999873 455 77889999999998 999
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 046194 715 DKIEEFINKM-PITP----NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKAR 789 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 789 (934)
++|.+.+++. ...| +...|..+...+... |++++|...++++++++|+++..+..++.++...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE--ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999987 4556 688899999999999 99999999999999999999999999999999999999998754
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.23 E-value=1.1e-10 Score=121.59 Aligned_cols=216 Identities=11% Similarity=-0.047 Sum_probs=177.5
Q ss_pred hchhhHHHHHHHHHHHHHhCCC---CcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHH
Q 046194 572 ASVATLERGMEVHACGVRACLE---FDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDK 645 (934)
Q Consensus 572 ~~~~~~~~a~~i~~~~~~~~~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 645 (934)
...+++++|...++.+++.... .+..++..+...|...|++++|...|+.+.. .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 4568999999999999886321 2577888999999999999999999998763 356789999999999999999
Q ss_pred HHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 646 ALTLFSQMKLDGPLP-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 646 A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
|+..|+++.+. .| +...+..+...+...|++++|..+|+.+.+ +.|+..........+.+.|++++|.+.+++.
T Consensus 96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999985 45 467788888999999999999999999987 3566555555666667889999999999766
Q ss_pred --CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC----CCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 725 --PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ----NAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 725 --~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
..+++...|. ++..+... ++.+.|...++++++..|. ++..+..++.+|...|++++|.+.++...+.
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGN--ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTS--SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCcchHHHH-HHHHHHHh--cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2334444444 66666666 7889999999999888774 3688999999999999999999999988754
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.23 E-value=1.5e-10 Score=124.26 Aligned_cols=264 Identities=11% Similarity=0.037 Sum_probs=167.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccC-CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 046194 499 ALLSCYGKCGEMDDCEKIFARMSER-RD-----EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACA 572 (934)
Q Consensus 499 ~li~~~~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 572 (934)
.....+...|++++|...|++.... |+ ...|..+...|...|++++|+..|++.....
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------- 73 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA---------------- 73 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----------------
Confidence 3445566666666666666665442 22 2345556666666666666666666554310
Q ss_pred chhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC----cccccHHHHHHHHcCC
Q 046194 573 SVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNSMISGYARHGH 642 (934)
Q Consensus 573 ~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~ 642 (934)
.+.+..+ ...++..+...|...|++++|...|++... ++ ..+|..+...|...|+
T Consensus 74 ---------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 74 ---------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp ---------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 0001111 233444555555666666666655554431 11 1255566666666666
Q ss_pred --------------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC
Q 046194 643 --------------------GDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ 697 (934)
Q Consensus 643 --------------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 697 (934)
+++|+..+++..+. +-.|. ..++..+...+...|++++|...++...+...-.++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 77777777665432 11121 235666677788888888888888887653211122
Q ss_pred ----cccHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 698 ----LEQFSCMVDLLGRAGELDKIEEFINKM----PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 698 ----~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
...+..+...+.+.|++++|.+.+++. +..++ ..++..+...+... |+.+.|...+++++++.|..
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL--QDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhc
Confidence 336778888888999999998888775 11122 45677777888888 99999999999988876543
Q ss_pred ------CchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 766 ------AVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 766 ------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
...+..++.+|...|++++|.+.+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 347889999999999999999998887653
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.22 E-value=9.2e-11 Score=129.89 Aligned_cols=269 Identities=10% Similarity=0.025 Sum_probs=164.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHH
Q 046194 493 ETTIENALLSCYGKCGEMDDCEKIFARMSER-RD-----EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFAT 566 (934)
Q Consensus 493 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 566 (934)
....+..+...+.+.|++++|...|++.... |+ ...|..+...|...|++++|+..|++.....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA---------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH----------
Confidence 3344455566666677777777777665542 22 2345566666666677777776666654320
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC----cccccHHHHH
Q 046194 567 VLSACASVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNSMISG 636 (934)
Q Consensus 567 ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~ 636 (934)
.+.+..| ...++..+...|...|++++|...|+.... ++ ..+|..+...
T Consensus 78 ---------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 78 ---------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp ---------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 0001111 123344445555555555555555544331 11 2255556666
Q ss_pred HHHcCC--------------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHh
Q 046194 637 YARHGH--------------------GDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQV 691 (934)
Q Consensus 637 ~~~~g~--------------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 691 (934)
|...|+ +++|+..+++..+. +-.|. ..++..+...+...|++++|...|++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666 66777666665431 11122 235666667778888888888888877653
Q ss_pred hCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 046194 692 YGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM----PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLF 759 (934)
Q Consensus 692 ~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 759 (934)
..-.++ ...|..+...|...|++++|.+.+++. +..++ ..++..+...+... |+++.|...+++++
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL--QDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHH
Confidence 222222 336777888888888888888888765 11112 44677777777777 88888888888888
Q ss_pred hcCCCC------CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 760 EMEPQN------AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 760 ~~~p~~------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++.+.. +..+..++.+|...|++++|.+.+++..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 775543 45788889999999999999888877654
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.22 E-value=5.1e-11 Score=131.98 Aligned_cols=298 Identities=8% Similarity=-0.017 Sum_probs=195.6
Q ss_pred CCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhhccC----C----C
Q 046194 457 PNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANE---TTIENALLSCYGKCGEMDDCEKIFARMSER----R----D 525 (934)
Q Consensus 457 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p----~ 525 (934)
+....+......+...|+++.|...+..+++...... ..++..+...|...|++++|...|++.... + .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3344455666778899999999999999988754322 357788899999999999999999876431 1 2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhchhh--------------------HHHH
Q 046194 526 EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ-RLD----HFTFATVLSACASVAT--------------------LERG 580 (934)
Q Consensus 526 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~--------------------~~~a 580 (934)
..+|..+...|...|++++|+..|.+...... .++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44677888889999999999999998765311 011 2355555556666666 5555
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCC--CcccccHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046194 581 MEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVR--NVYSWNSMISGYARHGHGDKALTLFSQMKLDGP 658 (934)
Q Consensus 581 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 658 (934)
...+....+. +.....+ ...+|..+...|...|++++|+..|++..+...
T Consensus 167 ~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 167 VDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5555544331 1111100 112455556666666666666666666554210
Q ss_pred -CCC----hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC----C
Q 046194 659 -LPD----HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM----P 725 (934)
Q Consensus 659 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m----~ 725 (934)
.++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|.+.|++++|.+.+++. +
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 111 225666666777788888888877776553211112 456677788888888888888877765 1
Q ss_pred CCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC------CCchHHHHHHHHHcCCChHH
Q 046194 726 ITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ------NAVNYVLLANMYASGGKWED 784 (934)
Q Consensus 726 ~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~y~~l~~~~~~~g~~~~ 784 (934)
..++ ..++..+...+... |+.+.|...+++++++.+. ....+..++.+|...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTAL--GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1122 44677777788888 8999999999888877432 34567788888888886643
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=2.3e-08 Score=115.86 Aligned_cols=217 Identities=11% Similarity=0.041 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHH-HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccC
Q 046194 544 KAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGM-EVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLM 622 (934)
Q Consensus 544 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 622 (934)
.+..+|++.+.. ..-+...|.....-+...|+.+.|. ++++.++.. .+.+...+-.++...-+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666654 2335556666666666677777785 888888764 3446666777888888888888888888876
Q ss_pred CC-------------CC------------cccccHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHh-h
Q 046194 623 PV-------------RN------------VYSWNSMISGYARHGHGDKALTLFSQMKLD-GPLPDHVTFVGVLSACSH-A 675 (934)
Q Consensus 623 ~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~ 675 (934)
.. |+ ...|...+....+.|..+.|..+|.+..+. + .+....|......-.+ .
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 53 21 236888888888889999999999999885 2 1122333322222223 3
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhccCCCcHH
Q 046194 676 GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP----NSLIWRTVLGACCRANCRKTEL 750 (934)
Q Consensus 676 g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~~~~~~~~ 750 (934)
++.+.|.++|+...+.+. -+...+...++.+...|+.+.|..+|++. ...| ....|...+..-..+ |+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~--G~~~~ 559 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV--GSLNS 559 (679)
T ss_dssp SCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT--CCSHH
T ss_pred CCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc--CCHHH
Confidence 558999999999998643 23556678888889999999999999987 3333 356899999998899 99999
Q ss_pred HHHHHHHHHhcCCCCCc
Q 046194 751 GRKAANMLFEMEPQNAV 767 (934)
Q Consensus 751 a~~~~~~~~~~~p~~~~ 767 (934)
+..+.+++.+..|+++.
T Consensus 560 ~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHhCCCCcH
Confidence 99999999999998754
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=1.4e-10 Score=136.00 Aligned_cols=161 Identities=15% Similarity=0.223 Sum_probs=138.3
Q ss_pred cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHH
Q 046194 627 VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCM 704 (934)
Q Consensus 627 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 704 (934)
..+|+.|...|.+.|++++|++.|++..+ +.|+ ...+..+..++.+.|++++|++.|++..+ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 34677788888888888888888888888 4666 56788888889999999999999998876 4566 7788889
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 046194 705 VDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 782 (934)
..+|.+.|++++|++.+++. .+.|+ ...|..|...+... |++++|+..++++++++|+++..|..|+.+|...|+|
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~--g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS--GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999887 55664 67899999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 046194 783 EDVAKARKAMKE 794 (934)
Q Consensus 783 ~~a~~~~~~m~~ 794 (934)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988776653
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.15 E-value=3.6e-09 Score=112.09 Aligned_cols=186 Identities=12% Similarity=0.094 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CC-cc-cccHHHHHHHHcCChHHHHHHHHHH
Q 046194 578 ERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--RN-VY-SWNSMISGYARHGHGDKALTLFSQM 653 (934)
Q Consensus 578 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~~~~~g~~~~A~~l~~~m 653 (934)
++|..+++.+++.-.+.+...+..++..+.+.|++++|.++|++... |+ .. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66777777766631223556777888888888888888888887653 32 33 7888888888899999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHH-hhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-C---CCC
Q 046194 654 KLDGPLPDHVTFVGVLSACS-HAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-P---ITP 728 (934)
Q Consensus 654 ~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~---~~p 728 (934)
.+.. +++...|........ ..|+.++|..+|+...+.. +-+...|..+++.+.+.|++++|..+|++. . +.|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 8853 223344443332222 3699999999999988742 223778888899999999999999999887 2 355
Q ss_pred --CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 729 --NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 729 --~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
....|..++.....+ |+.+.+..+++++.+..|+++..
T Consensus 238 ~~~~~l~~~~~~~~~~~--g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 238 EKSGEIWARFLAFESNI--GDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp GGCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHccccccc
Confidence 467899989888888 99999999999999999987543
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.14 E-value=2.6e-10 Score=126.60 Aligned_cols=275 Identities=11% Similarity=0.035 Sum_probs=179.5
Q ss_pred ccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-------C-Ccch
Q 046194 460 VTFINILAAASSFSMGKLGHQVHAQVIKYNVANE---TTIENALLSCYGKCGEMDDCEKIFARMSER-------R-DEVS 528 (934)
Q Consensus 460 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------p-~~~~ 528 (934)
..+..+...+...|+++.|...+..+++...... ..++..+...|...|++++|...|++.... | ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556678889999999999999988754322 147888899999999999999999876542 1 3456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhchhh-----------------HHHHHHHHHH
Q 046194 529 WNSMISGYIHNELLPKAMNLVWFMMQR----GQRL-DHFTFATVLSACASVAT-----------------LERGMEVHAC 586 (934)
Q Consensus 529 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~-----------------~~~a~~i~~~ 586 (934)
|..+...|...|++++|+..|++.... +-.| ...++..+...+...|+ ++.|.+.+..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788888999999999999999987653 1112 12355555566666666 5555555554
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCC--CcccccHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC--
Q 046194 587 GVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVR--NVYSWNSMISGYARHGHGDKALTLFSQMKLDGP-LPD-- 661 (934)
Q Consensus 587 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-- 661 (934)
..+. +.....+ ...+|..+...|...|++++|+..|++..+... .++
T Consensus 209 al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 209 NLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 4331 0000000 112444555556666666666666666554210 011
Q ss_pred --hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC-CC---CCC--
Q 046194 662 --HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM-PI---TPN-- 729 (934)
Q Consensus 662 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m-~~---~p~-- 729 (934)
..++..+...+...|++++|...|++..+...-..+ ...+..+..+|.+.|++++|.+.+++. .. .++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 125666666777778888888777776553211111 456677778888888888888887765 11 111
Q ss_pred --HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 730 --SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 730 --~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
..++..+...+... |+.+.|...+++++++.+.
T Consensus 341 ~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 341 GEARACWSLGNAHSAI--GGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHhh
Confidence 34667777788888 9999999999998888764
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.12 E-value=1.3e-07 Score=109.66 Aligned_cols=228 Identities=12% Similarity=0.050 Sum_probs=150.8
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046194 478 GHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCE-KIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQ 554 (934)
Q Consensus 478 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 554 (934)
...+++..+.. ++....+|-..+..+.+.|+.++|. ++|++.... | +...|-..+...-+.|++++|.++|+++..
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44556665554 3345666666677777777777775 777766543 4 444566677777777888888888877765
Q ss_pred cC---------CCCC------------HhHHHHHHHHHhchhhHHHHHHHHHHHHHh-C-CCCcHhHHHHHHHHHHhcC-
Q 046194 555 RG---------QRLD------------HFTFATVLSACASVATLERGMEVHACGVRA-C-LEFDVVIGSALVDMYSKCG- 610 (934)
Q Consensus 555 ~g---------~~p~------------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~-~~~~~~~~~~li~~y~~~g- 610 (934)
.. -.|+ ...|...+....+.|.++.|+++++.+++. + ..+...+..+. +-.+++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~--lE~~~~~ 484 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAY--IEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHH--HHHTTTS
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHH--HHHHhCC
Confidence 31 0132 235677777777788888899998888775 2 22334433333 334444
Q ss_pred CHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 611 RIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD--HVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 611 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
+.+.|.++|+...+ .+...|...+......|+.+.|..+|++.......|+ ...|...+.--...|+.+.+.++.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 48888888887763 3455677777777788899999999998887532222 345666666667789999999999
Q ss_pred HHhHHhhCCCCCcccHHHHHHHHhhc
Q 046194 686 KSMSQVYGLIPQLEQFSCMVDLLGRA 711 (934)
Q Consensus 686 ~~m~~~~~~~p~~~~y~~li~~l~~~ 711 (934)
+++.+. .|+......+++-|.-.
T Consensus 565 ~R~~~~---~P~~~~~~~f~~ry~~~ 587 (679)
T 4e6h_A 565 KRFFEK---FPEVNKLEEFTNKYKVL 587 (679)
T ss_dssp HHHHHH---STTCCHHHHHHHHTCBT
T ss_pred HHHHHh---CCCCcHHHHHHHHhcCC
Confidence 998874 36655556666666533
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.12 E-value=4.2e-10 Score=120.63 Aligned_cols=270 Identities=7% Similarity=-0.027 Sum_probs=169.8
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhhccC----C----CcchHH
Q 046194 462 FINILAAASSFSMGKLGHQVHAQVIKYNVANE---TTIENALLSCYGKCGEMDDCEKIFARMSER----R----DEVSWN 530 (934)
Q Consensus 462 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p----~~~~~~ 530 (934)
+......+...|+++.|...+..+++...... ..++..+...|...|++++|.+.+++.... + ....|.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445667889999999999999988753322 367788899999999999999999876542 1 245678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhchhh--------------------HHHHHHHHH
Q 046194 531 SMISGYIHNELLPKAMNLVWFMMQRGQ-RLD----HFTFATVLSACASVAT--------------------LERGMEVHA 585 (934)
Q Consensus 531 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~--------------------~~~a~~i~~ 585 (934)
.+...|...|++++|+..|.+...... .++ ..++..+...+...|+ ++.|.+.+.
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 888899999999999999998765311 112 2355566666667777 666666665
Q ss_pred HHHHh----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCC-C
Q 046194 586 CGVRA----CLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGP-L 659 (934)
Q Consensus 586 ~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~ 659 (934)
...+. +..+ ... +|..+...|...|++++|+..+++..+... .
T Consensus 168 ~a~~~~~~~~~~~~~~~-------------------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGR-------------------------------AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHHHTCHHHHHH-------------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHH-------------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 54331 1011 122 344445555555555555555555543200 0
Q ss_pred CC----hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC-C---CC
Q 046194 660 PD----HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM-P---IT 727 (934)
Q Consensus 660 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m-~---~~ 727 (934)
++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++. . ..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 124555566666777777777777666542111111 445666777777777777777777665 1 11
Q ss_pred CC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 728 PN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 728 p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
++ ..++..+...+... |+.+.|...+++++++.++
T Consensus 297 ~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTAL--GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHh
Confidence 11 33566777777777 8888888888888877654
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.09 E-value=7.2e-10 Score=121.80 Aligned_cols=221 Identities=7% Similarity=0.014 Sum_probs=135.1
Q ss_pred HhchhhHHHHHHHHHHHHHh----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC-----cccccHHHH
Q 046194 571 CASVATLERGMEVHACGVRA----CLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV-----RN-----VYSWNSMIS 635 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 635 (934)
+...|++++|...+..+.+. +-.+ ...++..+...|...|++++|...+++... ++ ..+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34455556666555555442 1111 234556666666677777666666655431 11 235666777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh---CCCCC-cccHHHHHH
Q 046194 636 GYARHGHGDKALTLFSQMKLDGP-LPD----HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY---GLIPQ-LEQFSCMVD 706 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~y~~li~ 706 (934)
.|...|++++|+..|++..+... .++ ..++..+...+...|++++|.+.|++..+.. +..|. ..++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 77777777777777777664210 111 1356667777788888888888887776521 22133 556777788
Q ss_pred HHhhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhccCCC---cHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 707 LLGRAGELDKIEEFINKM-PI-----TPN-SLIWRTVLGACCRANCRK---TELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 707 ~l~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
+|.+.|++++|.+.+++. .+ .|. ...+..+...+... |+ .+.|...+++. ...|.....+..++.+|
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSG--PDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSS--CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 888888888888887765 11 222 22244555555555 66 55555555554 23344455778889999
Q ss_pred HcCCChHHHHHHHHHHHh
Q 046194 777 ASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 777 ~~~g~~~~a~~~~~~m~~ 794 (934)
...|++++|.+.+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999888887654
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.09 E-value=2.7e-10 Score=120.88 Aligned_cols=240 Identities=10% Similarity=-0.005 Sum_probs=108.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHh------CC-C
Q 046194 528 SWNSMISGYIHNELLPKAMNLVWFMMQR-------GQRLDHFTFATVLSACASVATLERGMEVHACGVRA------CL-E 593 (934)
Q Consensus 528 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------~~-~ 593 (934)
+|..+...|...|++++|+.+|+++... ........+..+...+...|++++|...+..+++. +- +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444555555555555555554431 11111233333334444444444444444443332 11 1
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhccCCC-------C----CcccccHHHHHHHHcCChHHHHHHHHHHHHC------
Q 046194 594 FDVVIGSALVDMYSKCGRIDYASRFFDLMPV-------R----NVYSWNSMISGYARHGHGDKALTLFSQMKLD------ 656 (934)
Q Consensus 594 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 656 (934)
....++..+...|...|++++|...|++... + ...+|..+...|...|++++|+..|+++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 1345556666777777777777776665431 1 1124455555555555666666555555442
Q ss_pred CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh------CCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCC
Q 046194 657 GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY------GLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPN 729 (934)
Q Consensus 657 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~ 729 (934)
+-.|+ ..++..+...+...|++++|..+|+++.+.. ...|........
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~------------------------- 243 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH------------------------- 243 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-------------------------
Confidence 11222 2234444455555555555555555554310 011111000000
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 730 SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 730 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
...+..+...+... +....+...++.+....|.++..+..++.+|...|++++|.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 244 AEEREECKGKQKDG--TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHC---------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhhH--HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11122222222233 4555555666666666777777778888888888888888777776543
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.08 E-value=1.2e-09 Score=105.92 Aligned_cols=165 Identities=16% Similarity=0.062 Sum_probs=137.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLS 670 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 670 (934)
++.+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 566788888888999999999999887753 35568888899999999999999999998885 444 555666677
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCC
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRK 747 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 747 (934)
.+...++++.+...+....+. .|+ ...+..+..+|.+.|++++|++.+++. ...| +..+|..+...+... |+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~--g~ 156 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK--GL 156 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TC
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC--CC
Confidence 788899999999999988773 344 778888999999999999999999887 4455 577899999999998 99
Q ss_pred cHHHHHHHHHHHhcCCCCC
Q 046194 748 TELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~~~ 766 (934)
.++|...++++++++|+++
T Consensus 157 ~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhCCccCH
Confidence 9999999999999999764
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.07 E-value=2.5e-09 Score=117.47 Aligned_cols=229 Identities=8% Similarity=-0.003 Sum_probs=158.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhchhhHHHHHHHHHHHHHh--CC---CC-cHhHHHHH
Q 046194 534 SGYIHNELLPKAMNLVWFMMQR----GQRL-DHFTFATVLSACASVATLERGMEVHACGVRA--CL---EF-DVVIGSAL 602 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--~~---~~-~~~~~~~l 602 (934)
..+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+..+.+. .. .+ ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445566666666666665542 1111 1244555555666666666666666655542 11 11 24566777
Q ss_pred HHHHHhcCCHHHHHHHhccCCC-----CCc----ccccHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPV-----RNV----YSWNSMISGYARHGHGDKALTLFSQMKLD----GPLPD-HVTFVGV 668 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~l 668 (934)
...|...|++++|...|++... ++. .+|..+...|...|++++|+..|++..+. +..|+ ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7888888888888888876642 121 37788888999999999999999988762 22244 5568888
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCC---cccHHHHHHHHhhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQ---LEQFSCMVDLLGRAGE---LDKIEEFINKMPITPNS-LIWRTVLGACC 741 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ll~~~~ 741 (934)
...+...|++++|...+++..+...-.++ ...+..+...+...|+ +++|++++++.+..|+. ..+..|...+.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 88899999999999999988763211122 3346778889999999 99999999998665553 35677777888
Q ss_pred hccCCCcHHHHHHHHHHHhcCCC
Q 046194 742 RANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
.. |+.+.|...+++++++...
T Consensus 351 ~~--g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 351 ER--KNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HT--TCHHHHHHHHHHHHHHHTS
T ss_pred HC--CCHHHHHHHHHHHHHHHHH
Confidence 88 9999999999998877543
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.06 E-value=1.8e-09 Score=104.26 Aligned_cols=127 Identities=13% Similarity=0.032 Sum_probs=76.3
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-P-ITPNSLIWRTVLGACC 741 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~ 741 (934)
.+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++++ . .+.+...|..+...+.
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 121 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence 3444444444445555555555444432 1112344444555555555555555555544 1 1234556666666776
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.. |+.+.|...++++++..|.++..+..++.+|...|++++|.+.++...+
T Consensus 122 ~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 122 NL--GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hc--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66 7777777777777777777777788888888888888888777776654
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.04 E-value=2.1e-09 Score=108.26 Aligned_cols=186 Identities=9% Similarity=-0.030 Sum_probs=103.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC----CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV----RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVL 669 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 669 (934)
|+..+..+...|.+.|++++|...|+.... ++...|..+..+|...|++++|+..|++..+ ..|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 445555566666666666666666665432 4444555566666666666666666666665 3444 34455555
Q ss_pred HHHHhhCcHHHHHHHHHHhHHhhCCCCC-c-------ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHH
Q 046194 670 SACSHAGLVDEGFKHFKSMSQVYGLIPQ-L-------EQFSCMVDLLGRAGELDKIEEFINKM-PITPN---SLIWRTVL 737 (934)
Q Consensus 670 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll 737 (934)
..+...|++++|...|+...+. .|+ . ..|..+...+.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5666666666666666666552 233 2 33555556666666666666666655 44554 23444444
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+... +....+++..+.+.++..|..+ .....|.+++|...+++..+
T Consensus 161 ~~~~~~-------~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNN-------GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHH-------HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 444332 3344455555555554443322 23334455888888777764
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.02 E-value=3.7e-09 Score=106.46 Aligned_cols=205 Identities=9% Similarity=0.061 Sum_probs=160.4
Q ss_pred CCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHH
Q 046194 559 LDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMIS 635 (934)
Q Consensus 559 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 635 (934)
.|...+...-..+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|+.... | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355777788888999999999999999999977546777777799999999999999999998763 3 4458889999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh--------hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC---cccHHHH
Q 046194 636 GYARHGHGDKALTLFSQMKLDGPLPDH--------VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ---LEQFSCM 704 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~l 704 (934)
.|...|++++|+..|++..+. .|+. ..|..+...+...|++++|++.|+...+ +.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999984 5653 3466777788899999999999999976 4565 5677888
Q ss_pred HHHHhhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 705 VDLLGRAGEL--DKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 705 i~~l~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
..+|...|+. ++|..+ ...+...+..+.. ... +.++.|...++++++++|+++.....+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~--~~~--~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL-----ASSNKEKYASEKA--KAD--AAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG-----TTTCHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc-----ccCCHHHHHHHHH--HHH--HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766643 333222 1223444444433 334 78899999999999999999888887777643
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.99 E-value=1.4e-08 Score=107.50 Aligned_cols=210 Identities=9% Similarity=-0.005 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHH-------hcCCH-------HHHHHHhccCCC---C-CcccccHHHHHHHHc
Q 046194 579 RGMEVHACGVRACLEFDVVIGSALVDMYS-------KCGRI-------DYASRFFDLMPV---R-NVYSWNSMISGYARH 640 (934)
Q Consensus 579 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 640 (934)
+|..+++.+++.. +.++..+..++..+. +.|++ ++|..+|++... | +...|..++..+.+.
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4444444444431 224455555555544 45775 899999997653 3 445899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHh-hcCChHHH
Q 046194 641 GHGDKALTLFSQMKLDGPLPDHV--TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLG-RAGELDKI 717 (934)
Q Consensus 641 g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~-~~g~~~~A 717 (934)
|++++|..+|+++.+ +.|+.. .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998 567643 7888888899999999999999999872 2233445544443322 36999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHcCCChHHHHHHHHH
Q 046194 718 EEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEM---EPQ-NAVNYVLLANMYASGGKWEDVAKARKA 791 (934)
Q Consensus 718 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~y~~l~~~~~~~g~~~~a~~~~~~ 791 (934)
.++|++. ...| +...|..++..+... |+.+.|...++++++. .|+ ....|..+++.+.+.|+.++|..+++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHL--NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999987 3334 578899999999888 9999999999999996 453 566888999999999999999999888
Q ss_pred HHhC
Q 046194 792 MKEA 795 (934)
Q Consensus 792 m~~~ 795 (934)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.99 E-value=9e-08 Score=104.47 Aligned_cols=194 Identities=11% Similarity=0.004 Sum_probs=117.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCC-------C---C-cccccHHHHHHHHcCChHHHHHHHHHHHHCCCC--C-C-hh
Q 046194 599 GSALVDMYSKCGRIDYASRFFDLMPV-------R---N-VYSWNSMISGYARHGHGDKALTLFSQMKLDGPL--P-D-HV 663 (934)
Q Consensus 599 ~~~li~~y~~~g~~~~A~~~~~~~~~-------~---~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~-~~ 663 (934)
...+...|...|++++|...+++... + . ...+..+...|...|++++|...+++..+.... | . ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 34455556666666666666554431 1 1 124445566667777777777777776653211 1 1 23
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHH-----HHHHHHhhcCChHHHHHHHHhC-CCCCC-----HHH
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFS-----CMVDLLGRAGELDKIEEFINKM-PITPN-----SLI 732 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-----~li~~l~~~g~~~~A~~~~~~m-~~~p~-----~~~ 732 (934)
++..+...+...|++++|...++.......-......+. ..+..+...|++++|.+.+++. ...|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455566667777888888888777765321111111121 2234466788888888888776 22221 234
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC------CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFEMEPQN------AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+..+...+... |+.+.|...++.+.+..+.. ...+..++.+|...|+.++|.+.++...+
T Consensus 256 ~~~la~~~~~~--g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILL--GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56666677777 88888888888776664332 13667788888899999999888776653
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.99 E-value=1.1e-08 Score=98.77 Aligned_cols=169 Identities=12% Similarity=0.023 Sum_probs=142.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046194 596 VVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSAC 672 (934)
Q Consensus 596 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 672 (934)
...+..+...|...|++++|...|+.+.. .+...|..+...|...|++++|+..++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566778889999999999999998874 355678889999999999999999999998853 33466788888889
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTEL 750 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~ 750 (934)
...|++++|.++|+.+.+. .+.+...+..+..++.+.|++++|.+.++++ ...| +..+|..+...+... |+.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM--GRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc--CCHHH
Confidence 9999999999999999874 3345778889999999999999999999987 3333 577888899999988 99999
Q ss_pred HHHHHHHHHhcCCCCCchH
Q 046194 751 GRKAANMLFEMEPQNAVNY 769 (934)
Q Consensus 751 a~~~~~~~~~~~p~~~~~y 769 (934)
|...+++++++.|+++..+
T Consensus 163 A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 163 ALPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHcCCCchhhH
Confidence 9999999999999876543
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.97 E-value=8.8e-09 Score=112.79 Aligned_cols=220 Identities=10% Similarity=-0.007 Sum_probs=142.9
Q ss_pred HhchhhHHHHHHHHHHHHHhC--CC--C-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC-----cccccHHHH
Q 046194 571 CASVATLERGMEVHACGVRAC--LE--F-DVVIGSALVDMYSKCGRIDYASRFFDLMPV-----RN-----VYSWNSMIS 635 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~--~~--~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 635 (934)
+...|++++|...+..+.+.. .. + ...++..+...|...|+++.|...+++... ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445667777777777665431 11 1 245566677777788887777776665431 11 236677778
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh---CCCCCcccHHHHHHH
Q 046194 636 GYARHGHGDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY---GLIPQLEQFSCMVDL 707 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~y~~li~~ 707 (934)
.|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|...|++..+.. +.+.....+..+..+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 888888888888888877652 11111 2456677778888889999988888876521 122225677788888
Q ss_pred HhhcCChHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhccCCC---cHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 708 LGRAGELDKIEEFINKM----PI--TPNS-LIWRTVLGACCRANCRK---TELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m----~~--~p~~-~~~~~ll~~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
|.+.|++++|.+.+++. +. .|.. ..+..+...+... ++ .+.|...+++. ...|.....+..++.+|.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~--~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET--VDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 88899999998888775 11 2332 3344444444444 66 55555555541 222344556788999999
Q ss_pred cCCChHHHHHHHHHHH
Q 046194 778 SGGKWEDVAKARKAMK 793 (934)
Q Consensus 778 ~~g~~~~a~~~~~~m~ 793 (934)
..|++++|.+.+++..
T Consensus 348 ~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 9999999998877664
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.95 E-value=3.2e-09 Score=112.45 Aligned_cols=240 Identities=10% Similarity=0.017 Sum_probs=152.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcc--------C-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHc------CC
Q 046194 494 TTIENALLSCYGKCGEMDDCEKIFARMSE--------R-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQR------GQ 557 (934)
Q Consensus 494 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 557 (934)
..++..+...|...|++++|...|++... . | ....|..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34556677777777787777777776654 1 1 3345667777788888888888888777653 22
Q ss_pred CC-CHhHHHHHHHHHhchhhHHHHHHHHHHHHHh------CCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----
Q 046194 558 RL-DHFTFATVLSACASVATLERGMEVHACGVRA------CLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV----- 624 (934)
Q Consensus 558 ~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----- 624 (934)
.| ...++..+...+...|++++|...+..+.+. +..| ....+..+...|...|++++|.+.|+....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 23 3456667777788888888888888877664 2223 456778899999999999999999987642
Q ss_pred --C----CcccccHHHHHHHHcCChHHHHHHHHHHHHCC-------CCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHh
Q 046194 625 --R----NVYSWNSMISGYARHGHGDKALTLFSQMKLDG-------PLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQV 691 (934)
Q Consensus 625 --~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 691 (934)
+ ...+|..+...|...|++++|+..|+++.+.. ..|..........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------------------- 245 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAE--------------------- 245 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHH---------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH---------------------
Confidence 1 23378889999999999999999999998741 1122111111111
Q ss_pred hCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 692 YGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMP-ITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 692 ~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
.+..+...+...+.+.+|...++... ..| +..+|..+...+... |+.++|...+++++++.|+
T Consensus 246 --------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 246 --------EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ--GKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------HHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHC-
T ss_pred --------HHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHhhc
Confidence 11222333444555666666666552 233 345677777788887 8888888888888887764
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.94 E-value=7.5e-09 Score=116.73 Aligned_cols=206 Identities=12% Similarity=0.018 Sum_probs=105.5
Q ss_pred HHHHHHHHhhccC-C-CcchHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHH
Q 046194 511 DDCEKIFARMSER-R-DEVSWNSMISGYIHNELL-PKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACG 587 (934)
Q Consensus 511 ~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 587 (934)
+++...+++.... | +...|..+...|...|++ ++|++.|++..... +-+...+..+..++...|++++|.+.++.+
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444443332 2 344455555555556666 66666666555431 112344444445555555555555555555
Q ss_pred HHhCCCCcHhHHHHHHHHHHhc---------CCHHHHHHHhccCCC---CCcccccHHHHHHHHc--------CChHHHH
Q 046194 588 VRACLEFDVVIGSALVDMYSKC---------GRIDYASRFFDLMPV---RNVYSWNSMISGYARH--------GHGDKAL 647 (934)
Q Consensus 588 ~~~~~~~~~~~~~~li~~y~~~---------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--------g~~~~A~ 647 (934)
++.. |+...+..+...|... |++++|.+.|++..+ .+...|..+..+|... |++++|+
T Consensus 164 l~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 164 LTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 4432 3334444455555554 444444444444331 2233455555555555 5566666
Q ss_pred HHHHHHHHCCCCC----ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHH
Q 046194 648 TLFSQMKLDGPLP----DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFIN 722 (934)
Q Consensus 648 ~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~ 722 (934)
..|++..+. .| +...+..+..++...|++++|.+.|++..+ +.|+ ...+..+..++...|++++|.+.+.
T Consensus 242 ~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 242 SAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA---LDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666653 34 345555566666666666666666666654 2233 4455556666666666666665544
Q ss_pred hC
Q 046194 723 KM 724 (934)
Q Consensus 723 ~m 724 (934)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.86 E-value=2.3e-08 Score=104.93 Aligned_cols=161 Identities=9% Similarity=-0.029 Sum_probs=98.5
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHHHHHHHHHhh-CcHHHHHHHHHHhHHhhCCCCC----c
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGP---LPD--HVTFVGVLSACSHA-GLVDEGFKHFKSMSQVYGLIPQ----L 698 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~ 698 (934)
+|+.+...|...|++++|+..|++..+... .+. ..++..+...|... |++++|+..|++..+.+.-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 445555555556666666666655544210 111 23566677777775 8888888888887663211111 3
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---H-----HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch-
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITPN---S-----LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN- 768 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~- 768 (934)
.+|..+...|.+.|++++|.+.+++. ...|+ . ..|..+...+... |+.+.|...++++++++|..+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA--TDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT--TCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCCCcH
Confidence 45777888888888888888888876 22222 1 1456666667777 89999999999999998876553
Q ss_pred ----HHHHHHHHH--cCCChHHHHHHHHH
Q 046194 769 ----YVLLANMYA--SGGKWEDVAKARKA 791 (934)
Q Consensus 769 ----y~~l~~~~~--~~g~~~~a~~~~~~ 791 (934)
+..++..|. ..+++++|.+.++.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 334555554 45678888776543
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.86 E-value=8.5e-09 Score=120.97 Aligned_cols=163 Identities=10% Similarity=0.092 Sum_probs=135.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLS 670 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 670 (934)
+...++.|...|.+.|++++|.+.|++..+ | +..+|+.+...|.+.|++++|++.|++..+ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 467788888888888888888888887653 3 456888889999999999999999999888 4676 567888888
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCC
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRK 747 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~ 747 (934)
++...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. .+.|+ ...|..|...+... |+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~--g~ 160 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV--CD 160 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TC
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc--cc
Confidence 89999999999999998876 4566 778889999999999999999999887 56664 66888888888888 99
Q ss_pred cHHHHHHHHHHHhcCCC
Q 046194 748 TELGRKAANMLFEMEPQ 764 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~ 764 (934)
++.|...+++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999988877543
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.85 E-value=2e-07 Score=101.85 Aligned_cols=225 Identities=11% Similarity=0.022 Sum_probs=159.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhchhhHHHHHHHHHHHHHhC--C---CC-cHhHHHHH
Q 046194 534 SGYIHNELLPKAMNLVWFMMQRGQ-RLD----HFTFATVLSACASVATLERGMEVHACGVRAC--L---EF-DVVIGSAL 602 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--~---~~-~~~~~~~l 602 (934)
..+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+..+.+.. . .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345567777777777777655311 122 2455566666777777777777777665421 1 11 24566778
Q ss_pred HHHHHhcCCHHHHHHHhccCCC-----CC----cccccHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChhhHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNSMISGYARHGHGDKALTLFSQMKL-----DGPLPDHVTFVGV 668 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 668 (934)
...|...|++++|.+.|++... ++ ..+++.+...|...|++++|+..|++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 8888888888888888876542 12 23677888889999999999999998876 32 2225667778
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCC---cccHHHHHHHHhhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQ---LEQFSCMVDLLGRAGE---LDKIEEFINKMPITPNS-LIWRTVLGACC 741 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ll~~~~ 741 (934)
...+.+.|++++|..++++..+...-.++ ...+..+...+...|+ +++|++.+++.+..|+. ..+..+...+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 88899999999999999998874322222 3456667777888888 99999999987655543 35566777777
Q ss_pred hccCCCcHHHHHHHHHHHhc
Q 046194 742 RANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~ 761 (934)
.. |+.+.|...++++++.
T Consensus 348 ~~--g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SS--CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HT--TCHHHHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHHH
Confidence 78 9999999999888765
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.84 E-value=3.3e-09 Score=98.68 Aligned_cols=139 Identities=11% Similarity=0.034 Sum_probs=107.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCC
Q 046194 636 GYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGE 713 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~ 713 (934)
.+...|++++|++.+++... ..|+ ...+..+...|.+.|++++|++.|++..+ +.|+ ...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 34456677788887777655 2344 44566677778888888888888888876 3454 6778888888888888
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHH-HHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 046194 714 LDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRK-AANMLFEMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 714 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
+++|.+.+++. .+.| +..+|..+...+... |+.+++.. .++++++++|+++..|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKN--DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888876 5566 467888888888888 88876555 5699999999999999999999998885
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.82 E-value=2.7e-08 Score=104.31 Aligned_cols=168 Identities=8% Similarity=-0.064 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCCC-----CC----cccccHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC------
Q 046194 598 IGSALVDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNSMISGYARH-GHGDKALTLFSQMKLDGPLPD------ 661 (934)
Q Consensus 598 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~------ 661 (934)
+++.+..+|.+.|++++|...|+.... .+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 444445555555555555554444321 11 23566677777775 8888888888887663 221
Q ss_pred -hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc-----cHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH---
Q 046194 662 -HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE-----QFSCMVDLLGRAGELDKIEEFINKM-PITPNSL--- 731 (934)
Q Consensus 662 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~--- 731 (934)
..++..+...+...|++++|+..|+...+...-.+... .|..++.++...|++++|...+++. .+.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 23567777788888888888888888876311111111 4667778888888888888888877 4555422
Q ss_pred ---HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 732 ---IWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 732 ---~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
.+..++.++.....++++.|...++++.+++|....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 344555666532226677777777777777776533
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.81 E-value=8.8e-09 Score=107.18 Aligned_cols=164 Identities=14% Similarity=0.139 Sum_probs=80.6
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh-----CCCC
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLD------GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY-----GLIP 696 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p 696 (934)
+|..+...|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+|++..+.. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444444455555555555555544432 00122 3345555555666666666666666555421 0012
Q ss_pred C-cccHHHHHHHHhhcCChHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHhccCCC------cHHHHHHHHHH
Q 046194 697 Q-LEQFSCMVDLLGRAGELDKIEEFINKM-P---------ITPN-SLIWRTVLGACCRANCRK------TELGRKAANML 758 (934)
Q Consensus 697 ~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~---------~~p~-~~~~~~ll~~~~~~~~~~------~~~a~~~~~~~ 758 (934)
. ...+..+..+|.+.|++++|.+.++++ . ..|. ...|..+....... +. +..+...++.+
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK--DKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT--CCCCC------------CC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhc
Confidence 1 345555666666666666666666544 0 1121 12232222222222 22 22222222223
Q ss_pred HhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 759 FEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 759 ~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
....|..+..+..++.+|...|++++|.+.+++..+
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333455566788899999999999999988887654
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.81 E-value=9.8e-07 Score=96.13 Aligned_cols=194 Identities=8% Similarity=-0.063 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC---------C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----CHh
Q 046194 497 ENALLSCYGKCGEMDDCEKIFARMSER---------R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRL----DHF 562 (934)
Q Consensus 497 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~ 562 (934)
...+...|...|++++|...+++.... | ....+..+...|...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344555666666666666666654431 1 11234445556666677777777666655432111 123
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCc--HhHH-H---HHHHHHHhcCCHHHHHHHhccCCCCCcc-------c
Q 046194 563 TFATVLSACASVATLERGMEVHACGVRACLEFD--VVIG-S---ALVDMYSKCGRIDYASRFFDLMPVRNVY-------S 629 (934)
Q Consensus 563 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~-~---~li~~y~~~g~~~~A~~~~~~~~~~~~~-------~ 629 (934)
++..+...+...|++++|...++......-.++ .... . ..+..+...|+.++|...++....++.. .
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 344445555566666666666665544311111 1111 1 2233355666666666666655432211 2
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLD----GPLPDH-VTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334445555666666666666555432 111111 1233334445555555555555555443
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.76 E-value=1.7e-07 Score=96.32 Aligned_cols=202 Identities=10% Similarity=0.017 Sum_probs=126.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CC----cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hhh
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV--RN----VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD----HVT 664 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t 664 (934)
+...+-.+...+.+.|++++|...|+.+.. |+ ...|..+..+|.+.|++++|+..|++..+. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 445555566666677777777777776653 22 235556666677777777777777777663 232 223
Q ss_pred HHHHHHHHHh--------hCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 046194 665 FVGVLSACSH--------AGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRT 735 (934)
Q Consensus 665 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ 735 (934)
+..+..++.. .|++++|+..|+...+.+ |+ ......+.......+.+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 4444455555 667777777777666532 33 12221111111100000 112355
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcC----------CChHHHHHHHHHHHhCCCcCCCc
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNA---VNYVLLANMYASG----------GKWEDVAKARKAMKEAEVKKEAG 802 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~y~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~ 802 (934)
+...+... |+++.|...++++++..|+++ ..+..++.+|... |++++|.+.++.+.+..
T Consensus 154 la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~------ 225 (261)
T 3qky_A 154 AARLYERR--ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF------ 225 (261)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHc--cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC------
Confidence 66777777 999999999999999999854 4788999999977 89999999998887532
Q ss_pred eeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHH
Q 046194 803 CSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRD 841 (934)
Q Consensus 803 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 841 (934)
+.+|........+.++...+.+
T Consensus 226 -----------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 -----------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -----------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2355556666677777776654
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.68 E-value=6e-07 Score=92.05 Aligned_cols=159 Identities=9% Similarity=0.003 Sum_probs=79.7
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-----CcccHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-----QLEQFS 702 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~y~ 702 (934)
++..+..++...|++++|++++.+.+..|..++ ...+..++..+.+.|+.+.|.+.++.|.+ ..| +..+..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHHH
Confidence 333445555555666666666655544332122 23344444555556666666666665544 233 123333
Q ss_pred HHHHH--HhhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc----------CCCCCc
Q 046194 703 CMVDL--LGRAG--ELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEM----------EPQNAV 767 (934)
Q Consensus 703 ~li~~--l~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----------~p~~~~ 767 (934)
.|..+ ....| +.++|..+|+++ ...|+...-..|+.++... |++++|+..++.+.+. +|+|+.
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~--g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQ--RNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHH--TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHc--CCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 33333 22222 566666666665 3334422222333334444 6666666666655554 355666
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 768 NYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 768 ~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++..++.+....|+ +|.++++++++
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 66566555555665 56666666654
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.68 E-value=2.2e-07 Score=83.75 Aligned_cols=128 Identities=15% Similarity=0.252 Sum_probs=75.3
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHh
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLG 709 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~ 709 (934)
|..+...|...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|..+|+.+.+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------ 64 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------ 64 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------
Confidence 4445555555566666666666555532 122334444444555555555555555555432
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 046194 710 RAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKAR 789 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 789 (934)
.+.+...|..+...+... |+.+.|...++++.+..|.++..+..++.+|...|++++|.+.+
T Consensus 65 ----------------~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 65 ----------------DPRSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ----------------CTTCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ----------------CCCchHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 112344555556666666 67777777777777777777777777777777777777777777
Q ss_pred HHHHh
Q 046194 790 KAMKE 794 (934)
Q Consensus 790 ~~m~~ 794 (934)
+.+.+
T Consensus 127 ~~~~~ 131 (136)
T 2fo7_A 127 QKALE 131 (136)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66654
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.67 E-value=2.7e-07 Score=83.17 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046194 598 IGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH 674 (934)
Q Consensus 598 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 674 (934)
.+..+...|...|++++|..+|+.+.. .+...|..+...+...|++++|+..|+++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567788899999999999999998753 456688889999999999999999999998854 3345667778888899
Q ss_pred hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 675 AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 675 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
.|++++|.++++.+.+. .+.+...+..++..+.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999988773 2233556667777777777777777777654
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=4e-07 Score=91.12 Aligned_cols=179 Identities=11% Similarity=-0.054 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhccCCC--CCc----ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----hHH
Q 046194 597 VIGSALVDMYSKCGRIDYASRFFDLMPV--RNV----YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHV----TFV 666 (934)
Q Consensus 597 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~ 666 (934)
..+..+...+.+.|++++|...|+.+.. |+. ..+..+..+|.+.|++++|+..|+++.+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444455667777777777777777653 321 35666677777777777777777777763 44432 233
Q ss_pred HHHHHHHh------------------hCcHHHHHHHHHHhHHhhCCCCCc-ccHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 046194 667 GVLSACSH------------------AGLVDEGFKHFKSMSQVYGLIPQL-EQFSCMVDLLGRAGELDKIEEFINKMPIT 727 (934)
Q Consensus 667 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~~~~~~m~~~ 727 (934)
.+..++.. .|+.++|+..|+.+.+. .|+. ..+..... .+.+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH---------
Confidence 33333332 34555555555555442 2331 11111110 00000000
Q ss_pred CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 728 PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA---VNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 728 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
......+...+... |+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTER--GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112345566677 999999999999999999986 5689999999999999999999998887654
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.66 E-value=4.4e-07 Score=94.11 Aligned_cols=163 Identities=10% Similarity=0.040 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhccCCC-------C----CcccccHHHHHHHHcCChHHHHHHHHHHHHC------CCC
Q 046194 597 VIGSALVDMYSKCGRIDYASRFFDLMPV-------R----NVYSWNSMISGYARHGHGDKALTLFSQMKLD------GPL 659 (934)
Q Consensus 597 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~ 659 (934)
.++..+...|...|++++|.+.|++... + ...+|..+...|...|++++|+..|+++.+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444455555555555555555544321 1 1235556666666677777777777766653 112
Q ss_pred CC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh------CCCCC-cccHHHHHHHHhhcC------ChHHHHHHHHhCC
Q 046194 660 PD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY------GLIPQ-LEQFSCMVDLLGRAG------ELDKIEEFINKMP 725 (934)
Q Consensus 660 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~y~~li~~l~~~g------~~~~A~~~~~~m~ 725 (934)
|+ ..++..+...+...|++++|..+|++..+.. ...|. ...|..+...+...+ .+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 32 3456677777888888888888888776531 12233 333333333333322 3444555555553
Q ss_pred -CCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 726 -ITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 726 -~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
..|+ ..++..+...+... |+.+.|...+++++++
T Consensus 246 ~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQ--GKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh
Confidence 2233 44677788888888 9999999999988765
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.66 E-value=4.5e-08 Score=90.86 Aligned_cols=120 Identities=13% Similarity=0.008 Sum_probs=100.8
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccC
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANC 745 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 745 (934)
...+...|++++|+..++.... ..|+ ...+-.+..+|.+.|++++|.+.+++. .+.| +..+|..+...+...
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-- 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE-- 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Confidence 3445677899999999888754 4455 666778999999999999999999987 5566 577899999999998
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH-HHHHH
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA-RKAMK 793 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~-~~~m~ 793 (934)
|+.+.|...++++++++|+++..|..++.+|.+.|++++|.+. +++..
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887765 45544
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.65 E-value=5.5e-07 Score=92.33 Aligned_cols=242 Identities=9% Similarity=-0.007 Sum_probs=157.6
Q ss_pred HHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHH
Q 046194 504 YGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEV 583 (934)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 583 (934)
..-.|.+..+..-...+........-.-+.++|.-.|++.... .-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 3446777777775554433311122223446677677665321 1223333333333222 222 5566
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCC-----CcccccHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046194 584 HACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVR-----NVYSWNSMISGYARHGHGDKALTLFSQMKLDGP 658 (934)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 658 (934)
++..+..+ .++......+..+|...|++++|++++.+...+ +...+-.++..|.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66665554 344455567888889999999999999876432 344677788899999999999999999988 4
Q ss_pred CC-----ChhhHHHHHHHH--HhhC--cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CC--
Q 046194 659 LP-----DHVTFVGVLSAC--SHAG--LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PI-- 726 (934)
Q Consensus 659 ~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~-- 726 (934)
.| +..+...+..++ ...| ++++|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 67 356666677663 3334 899999999998764 344233344455888999999999998765 21
Q ss_pred --------CCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchH
Q 046194 727 --------TPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNY 769 (934)
Q Consensus 727 --------~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y 769 (934)
.|+ +.+.-.++...... |+ .+.+.++++.+..|++|-..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~l--gk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQ--GL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHT--TC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHh--Ch--HHHHHHHHHHHhCCCChHHH
Confidence 254 55555666666666 76 78999999999999987654
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.62 E-value=5.7e-08 Score=114.70 Aligned_cols=152 Identities=12% Similarity=0.068 Sum_probs=70.0
Q ss_pred hchhhHHHHHHHHHHHHHh------CC-CCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcC
Q 046194 572 ASVATLERGMEVHACGVRA------CL-EFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHG 641 (934)
Q Consensus 572 ~~~~~~~~a~~i~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 641 (934)
...|++++|.+.++.+.+. .. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 4555566666655555410 01 12334444444455555555555555544432 12334444444555555
Q ss_pred ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHH
Q 046194 642 HGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 642 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~ 719 (934)
++++|++.|++..+. .|+ ...+..+..++...|++++ ++.|++..+ +.|+ ...|..+..+|.+.|++++|.+
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555442 332 3334444444455555555 555544443 2232 3344444455555555555555
Q ss_pred HHHhC-CCCCC
Q 046194 720 FINKM-PITPN 729 (934)
Q Consensus 720 ~~~~m-~~~p~ 729 (934)
.+++. ...|+
T Consensus 556 ~~~~al~l~P~ 566 (681)
T 2pzi_A 556 TLDEVPPTSRH 566 (681)
T ss_dssp HHHTSCTTSTT
T ss_pred HHHhhcccCcc
Confidence 55444 33443
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.58 E-value=3.8e-07 Score=93.77 Aligned_cols=204 Identities=9% Similarity=-0.013 Sum_probs=138.2
Q ss_pred CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC--cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CC----ccccc
Q 046194 560 DHFTFATVLSACASVATLERGMEVHACGVRACLEF--DVVIGSALVDMYSKCGRIDYASRFFDLMPV--RN----VYSWN 631 (934)
Q Consensus 560 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~ 631 (934)
+...+......+.+.|++++|...+..+++..... ....+..+...|.+.|++++|...|+.... |+ ..+|.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45666677778889999999999999998864321 166778889999999999999999998763 32 23567
Q ss_pred HHHHHHHH--------cCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHH
Q 046194 632 SMISGYAR--------HGHGDKALTLFSQMKLDGPLPDHVT-FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFS 702 (934)
Q Consensus 632 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 702 (934)
.+..++.. .|++++|+..|++..+. .|+... ...+. .+...... -...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH-----HHHHHH
Confidence 77888888 99999999999999984 566432 21111 00111000 011245
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc--------cCCCcHHHHHHHHHHHhcCCCCCc--
Q 046194 703 CMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRA--------NCRKTELGRKAANMLFEMEPQNAV-- 767 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~--------~~~~~~~a~~~~~~~~~~~p~~~~-- 767 (934)
.+...|.+.|++++|...+++. ...|+ ...+..+..++... ..|+++.|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 5667777788888888777766 22332 33555555555532 016779999999999999999864
Q ss_pred -hHHHHHHHHHcCCChHH
Q 046194 768 -NYVLLANMYASGGKWED 784 (934)
Q Consensus 768 -~y~~l~~~~~~~g~~~~ 784 (934)
.+..+..++...|+.++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 34455555555554444
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.57 E-value=3.3e-07 Score=95.57 Aligned_cols=160 Identities=6% Similarity=-0.102 Sum_probs=125.7
Q ss_pred CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHH-
Q 046194 626 NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSC- 703 (934)
Q Consensus 626 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~- 703 (934)
+...+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...++.+.. ..|+......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHH
Confidence 3445566777788889999999999998884 565 55677778888999999999999988865 3455332222
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC--CchHHHHHHHHHcC
Q 046194 704 MVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN--AVNYVLLANMYASG 779 (934)
Q Consensus 704 li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~y~~l~~~~~~~ 779 (934)
....+.+.|+.++|.+.+++. ...| +...+..|...+... |+.+.|...++++++.+|++ +..+..|+.+|...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~--g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV--GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 233466778888888888776 4445 577888898899888 99999999999999999988 88899999999999
Q ss_pred CChHHHHHHHHHH
Q 046194 780 GKWEDVAKARKAM 792 (934)
Q Consensus 780 g~~~~a~~~~~~m 792 (934)
|+.++|...+++.
T Consensus 269 g~~~~a~~~~r~a 281 (287)
T 3qou_A 269 GTGDALASXYRRQ 281 (287)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 9999988776654
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.56 E-value=5.5e-07 Score=106.31 Aligned_cols=169 Identities=7% Similarity=-0.098 Sum_probs=105.6
Q ss_pred HhcCChhHHHHHHHHHHH------cCCCC-CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 046194 537 IHNELLPKAMNLVWFMMQ------RGQRL-DHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKC 609 (934)
Q Consensus 537 ~~~g~~~~A~~l~~~m~~------~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 609 (934)
...|++++|++.|++... ....| +...+..+..++...|++++|.+.++.+++... .+...+..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 566777777777777661 01223 335555666667777777777777777766432 2456666667777777
Q ss_pred CCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 610 GRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 610 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
|++++|.+.|++..+ | +...|..+..+|.+.|++++ ++.|++..+. .|+ ...+..+..++...|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776542 3 44566677777777777777 7777777763 444 455666666777777777777777
Q ss_pred HHhHHhhCCCCC-cccHHHHHHHHhhcC
Q 046194 686 KSMSQVYGLIPQ-LEQFSCMVDLLGRAG 712 (934)
Q Consensus 686 ~~m~~~~~~~p~-~~~y~~li~~l~~~g 712 (934)
++..+ +.|+ ...|..+..+|...|
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC---
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHccC
Confidence 76644 4455 455555555554433
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.52 E-value=4.9e-07 Score=80.83 Aligned_cols=93 Identities=9% Similarity=0.137 Sum_probs=54.2
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
..+...+..|.+.|++++|++.|++. ...| +..+|..+..++... |+.+.|...++++++++|+++..|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL--MEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh--ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34444555555555555555555554 2333 345555555555555 6666666666666666666666666666666
Q ss_pred HcCCChHHHHHHHHHHH
Q 046194 777 ASGGKWEDVAKARKAMK 793 (934)
Q Consensus 777 ~~~g~~~~a~~~~~~m~ 793 (934)
...|++++|.+.+++..
T Consensus 92 ~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 92 VAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666665554
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.51 E-value=3.6e-07 Score=87.44 Aligned_cols=154 Identities=8% Similarity=0.028 Sum_probs=93.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHH-Hhh
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDL-LGR 710 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~-l~~ 710 (934)
+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|+..|+...+. .|+...+..+... +.+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 344455555555555555555442 333 334445555555566666666665555432 2222222111111 112
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC--CchHHHHHHHHHcCCChHHHH
Q 046194 711 AGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN--AVNYVLLANMYASGGKWEDVA 786 (934)
Q Consensus 711 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~y~~l~~~~~~~g~~~~a~ 786 (934)
.+...+|.+.+++. ...| +...|..+...+... |+.++|...++++++.+|+. +..+..++.+|...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQV--GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22223455556554 3455 467778888888888 89999999999999998875 558889999999999999988
Q ss_pred HHHHHHH
Q 046194 787 KARKAMK 793 (934)
Q Consensus 787 ~~~~~m~ 793 (934)
..++...
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777654
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.51 E-value=6.7e-07 Score=103.62 Aligned_cols=160 Identities=9% Similarity=0.010 Sum_probs=118.9
Q ss_pred cCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHH
Q 046194 609 CGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKH 684 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 684 (934)
.|++++|.+.|++..+ | +...|..+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998764 3 4568888999999999999999999999984 565 66788888889999999999999
Q ss_pred HHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-cCCCcHHHHHHHHHHHh
Q 046194 685 FKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRA-NCRKTELGRKAANMLFE 760 (934)
Q Consensus 685 ~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-~~~~~~~a~~~~~~~~~ 760 (934)
|++..+. .|+ ...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... .+|+.+.|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999873 354 778889999999999999999999987 4455 456777777766654 12688999999999999
Q ss_pred cCCCCCchHHHHH
Q 046194 761 MEPQNAVNYVLLA 773 (934)
Q Consensus 761 ~~p~~~~~y~~l~ 773 (934)
.+|++...|..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999998888776
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.49 E-value=4.4e-07 Score=83.74 Aligned_cols=101 Identities=5% Similarity=-0.049 Sum_probs=88.0
Q ss_pred CCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchH
Q 046194 693 GLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNY 769 (934)
Q Consensus 693 ~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y 769 (934)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++... |+++.|...++++++++|+++..|
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~--g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK--EQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45555 567777888888999999999998887 4555 577899999999998 999999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 770 VLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 770 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
..++.+|...|++++|.+.+++..+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988753
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.47 E-value=2.8e-06 Score=83.94 Aligned_cols=161 Identities=6% Similarity=-0.082 Sum_probs=125.1
Q ss_pred CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhC----cHHHHHHHHHHhHHhhCCCCCccc
Q 046194 625 RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAG----LVDEGFKHFKSMSQVYGLIPQLEQ 700 (934)
Q Consensus 625 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~ 700 (934)
.+..++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|.++|+...+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 355566667777777788888888888888765 44556666666666 6 889999998888662 34667
Q ss_pred HHHHHHHHhh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----ccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 701 FSCMVDLLGR----AGELDKIEEFINKM-PITPN---SLIWRTVLGACCR----ANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 701 y~~li~~l~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
+..|..+|.. .+++++|.+++++. ...|+ +..+..|...+.. . ++.+.|...++++.++ |.++..
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~--~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP--EDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS--CCHHHHHHHHHHHHHT-SCTTHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHc-CCCHHH
Confidence 7788888877 78999999999887 44453 6778888888777 5 7899999999999998 777888
Q ss_pred HHHHHHHHHcC-C-----ChHHHHHHHHHHHhCC
Q 046194 769 YVLLANMYASG-G-----KWEDVAKARKAMKEAE 796 (934)
Q Consensus 769 y~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 796 (934)
+..|+.+|... | +.++|.+.+++..+.|
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999764 3 8999999998887655
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.46 E-value=6.7e-07 Score=79.90 Aligned_cols=113 Identities=11% Similarity=0.044 Sum_probs=89.7
Q ss_pred CCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHH
Q 046194 658 PLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIW 733 (934)
Q Consensus 658 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~ 733 (934)
+.|+ ...+......+.+.|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4555 34566677778888888888888888776 2344 677888888888888888888888876 4445 46788
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 734 RTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 734 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
..+..++... |++++|...++++++++|+++..+..|+++
T Consensus 85 ~~lg~~~~~~--~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAM--REWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8888888888 999999999999999999998888877765
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.45 E-value=7.2e-07 Score=94.14 Aligned_cols=162 Identities=9% Similarity=0.019 Sum_probs=90.2
Q ss_pred HHHHHhcCCHHHHHHHhccCCC-----CC----cccccHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNSMISGYARHGHGDKALTLFSQMKLDGP---LPD--HVTFVGV 668 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~l 668 (934)
...|...|++++|...|..... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456666777777666665431 11 22566666666777777777777776554210 111 2345555
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC-CC---CCC----HHHHHHH
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM-PI---TPN----SLIWRTV 736 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~l 736 (934)
...|.. |++++|+..|++..+.+.-..+ ...+..+..+|.+.|++++|.+.+++. .+ .++ ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 555655 7777777777666553211111 345566666666777777777666665 11 122 1134444
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 737 LGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 737 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
...+... |+.+.|...+++++ +.|.....
T Consensus 202 g~~~~~~--g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 202 VLVQLHR--ADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHc--CCHHHHHHHHHHHh-CCCCCCCC
Confidence 4444455 66677777777777 66665554
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.45 E-value=1.2e-06 Score=86.40 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=94.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHh
Q 046194 632 SMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLG 709 (934)
Q Consensus 632 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~ 709 (934)
.+...|.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|+..|++..+ +.|+ ...|..+..+|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 3788888999999999999999884 565 56778888889999999999999999887 4565 778888888887
Q ss_pred hcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 710 RAGE--LDKIEEFINKMPITPNS--LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 710 ~~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
..|. .+++...++.. ..|++ ..|..+..++... |+++.|...+++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~g~~~~~~--~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKL-SSPTKMQYARYRDGLSKLFT--TRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCH
Confidence 6654 44556666665 23443 3444445555566 89999999999999999963
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.44 E-value=1.5e-06 Score=91.65 Aligned_cols=220 Identities=11% Similarity=0.024 Sum_probs=151.1
Q ss_pred cCCHHHHHHHHHhhccCCCcchHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHH
Q 046194 507 CGEMDDCEKIFARMSERRDEVSWNSMISGYIH-NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHA 585 (934)
Q Consensus 507 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 585 (934)
.|++++|.+++++..+. .. .++.. .+++++|...|.+. ...+...|++++|...+.
T Consensus 4 ~~~~~eA~~~~~~a~k~-~~-------~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKY-LK-------TSFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHH-HC-------CCSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH-cc-------ccccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 56677888887776553 11 02222 57777887777665 345677899999999988
Q ss_pred HHHHhC----CCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC-------CC--cccccHHHHHHHHcCChHHHHHHHH
Q 046194 586 CGVRAC----LEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV-------RN--VYSWNSMISGYARHGHGDKALTLFS 651 (934)
Q Consensus 586 ~~~~~~----~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~ 651 (934)
.+.+.. -.+ -...++.+...|.+.|++++|...|++... +. ..+|+.+...|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 776532 111 245778888999999999999988876541 11 2477888888988 99999999999
Q ss_pred HHHHCCCCC-C----hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHH
Q 046194 652 QMKLDGPLP-D----HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFIN 722 (934)
Q Consensus 652 ~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~ 722 (934)
+..+..... + ..++..+...+...|++++|+..|++..+...-.++ ...+..++.++...|++++|.+.++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 987631111 1 356778888899999999999999998774211111 2356677778888899999999998
Q ss_pred hCCCCCC---H---HHHHHHHHHHHhccCCCcHHHHH
Q 046194 723 KMPITPN---S---LIWRTVLGACCRANCRKTELGRK 753 (934)
Q Consensus 723 ~m~~~p~---~---~~~~~ll~~~~~~~~~~~~~a~~ 753 (934)
+.-..|+ . .....++.++ .. |+.+....
T Consensus 220 ~al~~p~~~~~~e~~~l~~l~~~~-~~--~d~~~~~~ 253 (307)
T 2ifu_A 220 ESYSIPGFSGSEDCAALEDLLQAY-DE--QDEEQLLR 253 (307)
T ss_dssp HHTTSTTSTTSHHHHHHHHHHHHH-HT--TCHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHH-Hh--cCHHHHHH
Confidence 7534443 1 1334445444 34 56554444
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=5e-07 Score=83.42 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=83.5
Q ss_pred CCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHH
Q 046194 694 LIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYV 770 (934)
Q Consensus 694 ~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~ 770 (934)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++... |+++.|...++++++++|+++..|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM--GQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCchHHH
Confidence 3443 556667778888888888888888876 3444 677888888888888 9999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHh
Q 046194 771 LLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 771 ~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.++.+|...|++++|.+.++...+
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999887764
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.43 E-value=4.2e-05 Score=85.90 Aligned_cols=367 Identities=8% Similarity=0.004 Sum_probs=193.0
Q ss_pred hCC-ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCC-hHHH
Q 046194 334 QNG-CYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGY-LSRC 411 (934)
Q Consensus 334 ~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A 411 (934)
+.| +...|..+|+.+... -|. ++.+.++++|+..++. .|++.+|...+..-.+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377778888777652 222 8899999999998884 4688888888887777663 2344
Q ss_pred HHHHhhCC------CCCccchHHHHHHHH----hCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhc---cCCchHH
Q 046194 412 LKVFFLMP------EHDQVSWNSVIGAFA----DSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASS---FSMGKLG 478 (934)
Q Consensus 412 ~~~f~~~~------~~~~~~~~~li~~~~----~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~~~~~~a 478 (934)
..+|+... ..+...|...+.-+. .+++. +.+..+|++.+.. ++. .+..+...+.. ..+...+
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~-~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~ 142 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI-EKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITG 142 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH-HHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH-HHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccH
Confidence 45555432 124456666665543 23455 6777777777752 211 11122211111 0111111
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC---CCcchHHHHHHHHHhcCC-------hhHHHHH
Q 046194 479 HQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER---RDEVSWNSMISGYIHNEL-------LPKAMNL 548 (934)
Q Consensus 479 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~li~~~~~~g~-------~~~A~~l 548 (934)
..+ +.-+ .+.+..|..+++.+... .+...|...+.--..++. .+.+..+
T Consensus 143 ~~~-------------------~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 143 KKI-------------------VGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHH-------------------HHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHH-------------------HHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 111 1111 11223333333332221 133355554443222211 2345667
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH-HHHhccCC----
Q 046194 549 VWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYA-SRFFDLMP---- 623 (934)
Q Consensus 549 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~---- 623 (934)
|++++.. .+.+...+...+.-+.+.|+.+.|..+++.+++. +.+...+.. |+...+.++. ..+.+...
T Consensus 202 ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 202 HNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhcc
Confidence 7777664 2334556666666667778888888888888877 333333222 2221111111 11111100
Q ss_pred --------CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhhCcHHHHHHHHHHhHHhhCC
Q 046194 624 --------VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA-CSHAGLVDEGFKHFKSMSQVYGL 694 (934)
Q Consensus 624 --------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~ 694 (934)
......|...+..+.+++..+.|..+|++. +.. .++...|...... +...++.+.|..+|+...+.++-
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 011235666666666677788888888888 311 1222233221111 11233688888888888775422
Q ss_pred CCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 046194 695 IPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLF 759 (934)
Q Consensus 695 ~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 759 (934)
. +..+...++...+.|+.+.|..++++.. .....|...+.-=..+ |+.+.+..++++..
T Consensus 353 ~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~--G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 353 S--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMV--GSMELFRELVDQKM 411 (493)
T ss_dssp C--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHH--SCHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 2 3445666777778888888888888872 3466777777766667 77776666665554
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.42 E-value=2.8e-06 Score=88.52 Aligned_cols=131 Identities=11% Similarity=-0.026 Sum_probs=110.6
Q ss_pred CC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 046194 660 PD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTV 736 (934)
Q Consensus 660 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 736 (934)
|+ ...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|.+.|++++|.+.+++. ...|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 44 45566777788999999999999999987 3455 778899999999999999999999998 567776655444
Q ss_pred HHH-HHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 737 LGA-CCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 737 l~~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
... +... ++.+.|...++++++.+|+++..+..|+.+|...|++++|.+.++.+.+.
T Consensus 191 ~~~~l~~~--~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 191 AQIELLXQ--AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHH--HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhh--cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 443 4455 78888999999999999999999999999999999999999999888753
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.35 E-value=7.8e-06 Score=80.66 Aligned_cols=145 Identities=8% Similarity=-0.084 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcH
Q 046194 599 GSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLV 678 (934)
Q Consensus 599 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 678 (934)
+..+...|...|++++|...|+....++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34456667788888888888888877777788888888888888888888888887742 22355677777777888888
Q ss_pred HHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 046194 679 DEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPN-SLIWRTVLGACCRANCRKTELGRKAANM 757 (934)
Q Consensus 679 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 757 (934)
++|.+.|+...+. .|+..... +...| +...|+ ..+|..+...+... |+.+.|...+++
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 146 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKK--EEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHc--cCHHHHHHHHHH
Confidence 8888888877663 22211000 00000 012332 34566666677766 788888888888
Q ss_pred HHhcCCCC
Q 046194 758 LFEMEPQN 765 (934)
Q Consensus 758 ~~~~~p~~ 765 (934)
++++.|++
T Consensus 147 al~~~p~~ 154 (213)
T 1hh8_A 147 ATSMKSEP 154 (213)
T ss_dssp HHTTCCSG
T ss_pred HHHcCccc
Confidence 88887765
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.35 E-value=5.8e-06 Score=81.64 Aligned_cols=124 Identities=10% Similarity=0.010 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 742 (934)
+..+...+...|++++|...|+.. +.|+...|..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334445566677777777777655 2456667777777777777777777777765 2333 46677888888888
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNA----------------VNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~----------------~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
. |+++.|...+++++++.|.+. ..+..++.+|...|++++|.+.++...+.
T Consensus 84 ~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 T--EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp T--TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred c--ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8 899999999999999888877 88999999999999999999999988754
No 115
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.34 E-value=2.8e-06 Score=77.76 Aligned_cols=95 Identities=11% Similarity=-0.006 Sum_probs=79.8
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...+..+...+.+.|++++|.+.|++. ...| +...|..+...+... |+++.|...++++++++|+++..+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL--GLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 445556677778888888888888776 3444 577888888888888 999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|...|++++|.+.++...+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999887764
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.34 E-value=5.6e-06 Score=82.66 Aligned_cols=186 Identities=8% Similarity=-0.038 Sum_probs=130.9
Q ss_pred HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC--cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CCcc----cccH
Q 046194 561 HFTFATVLSACASVATLERGMEVHACGVRACLEF--DVVIGSALVDMYSKCGRIDYASRFFDLMPV--RNVY----SWNS 632 (934)
Q Consensus 561 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~~~ 632 (934)
...+......+...|++++|...++.+++..... ....+..+...|.+.|++++|...|+...+ |+.. +|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445566677889999999999999999864322 245677889999999999999999998763 4322 3444
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCC
Q 046194 633 MISGYAR------------------HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGL 694 (934)
Q Consensus 633 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 694 (934)
+..++.. .|++++|+..|+++.+. .|+....... ....+. +...+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a---~~~l~~------~~~~~~~---- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDA---TKRLVF------LKDRLAK---- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHH---HHHHHH------HHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHH---HHHHHH------HHHHHHH----
Confidence 5555544 57899999999999984 6775432111 111111 1111111
Q ss_pred CCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 695 IPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 695 ~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
....+...|.+.|++++|...++++ ...|+ ...+..+..++... |+.+.|...++.+....|++..+
T Consensus 149 -----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~--g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 149 -----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM--QMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhhCCCchhh
Confidence 1234677888999999999998887 33443 24677888888888 99999999999999988887654
No 117
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.34 E-value=1.2e-06 Score=86.44 Aligned_cols=156 Identities=10% Similarity=0.027 Sum_probs=114.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHH----------------HHHHHHhhCcHHHHHHHHHHhHHhhCCC
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVG----------------VLSACSHAGLVDEGFKHFKSMSQVYGLI 695 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 695 (934)
....+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|+..|++..+ +.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~ 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ---KA 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HC
Confidence 344566778888888888888773 555 334555 77789999999999999999987 34
Q ss_pred CC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 696 PQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 696 p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
|+ ...|..+..+|...|++++|.+.+++. ...| +..+|..+...+...+.++.+.+...++++....|.+ ..+..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHH
Confidence 55 788999999999999999999999987 5566 4678888888876651123344555666655433322 245667
Q ss_pred HHHHHcCCChHHHHHHHHHHHh
Q 046194 773 ANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 773 ~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+..+...|++++|...+++..+
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 8888999999999999988764
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.33 E-value=1.9e-05 Score=82.54 Aligned_cols=159 Identities=9% Similarity=-0.060 Sum_probs=114.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCChh----hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHH
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGP-LPDHV----TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSC 703 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~ 703 (934)
.+..+...|++++|+.++++..+... .|+.. .+..+...+...|++++|+..|+...+...-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677788888888888888876321 12211 1223555566777889999988888773112222 225888
Q ss_pred HHHHHhhcCChHHHHHHHHhC-----CC---CCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC------Cch
Q 046194 704 MVDLLGRAGELDKIEEFINKM-----PI---TPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN------AVN 768 (934)
Q Consensus 704 li~~l~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~ 768 (934)
+...|...|++++|.+.++++ .. .|. ..++..+...+... |++++|...+++++++.+.. +..
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~--~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD--SRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 888899999999988888776 11 122 33778888888888 99999999999998876543 567
Q ss_pred HHHHHHHHHcCCC-hHHHHHHHHHHH
Q 046194 769 YVLLANMYASGGK-WEDVAKARKAMK 793 (934)
Q Consensus 769 y~~l~~~~~~~g~-~~~a~~~~~~m~ 793 (934)
|..++.+|.+.|+ +++|.+.+++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999995 699998877664
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.32 E-value=2.5e-06 Score=81.43 Aligned_cols=151 Identities=9% Similarity=0.044 Sum_probs=93.5
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH--HHhh
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA--CSHA 675 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~ 675 (934)
.+...+.+.|++++|...|+.... .+...|..+...|...|++++|+..|++..+. .|+.. +..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHHHhh
Confidence 345556677777777777777663 24456777777777777777777777776653 34322 2222211 1122
Q ss_pred CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhccCCCcHH
Q 046194 676 GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN---SLIWRTVLGACCRANCRKTEL 750 (934)
Q Consensus 676 g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~~~~~~~~ 750 (934)
+...+|...|+...+ ..|+ ...+..+..+|.+.|++++|.+.++++ ...|+ ...|..+...+... |+.+.
T Consensus 88 ~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~--g~~~~ 162 (176)
T 2r5s_A 88 AAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL--GQGNA 162 (176)
T ss_dssp HTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH--CSSCH
T ss_pred cccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh--CCCCc
Confidence 222345666666655 3454 666777777777777777777777766 44443 45677777777777 77777
Q ss_pred HHHHHHHHH
Q 046194 751 GRKAANMLF 759 (934)
Q Consensus 751 a~~~~~~~~ 759 (934)
|...+++++
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.32 E-value=2.9e-05 Score=80.52 Aligned_cols=179 Identities=12% Similarity=0.139 Sum_probs=114.2
Q ss_pred CHHHHHHHhccCCC---CCcccccHHHHHH----HHc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHH-
Q 046194 611 RIDYASRFFDLMPV---RNVYSWNSMISGY----ARH---GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVD- 679 (934)
Q Consensus 611 ~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~- 679 (934)
+++++++.++.+.. ++..+|+.--..+ ... +++++++++++++.+.. +-|...|..-.-.+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 55556555555542 2333444433333 333 56777777777777642 223455555555566666666
Q ss_pred -HHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCC------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCC-cH
Q 046194 680 -EGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGE------LDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRK-TE 749 (934)
Q Consensus 680 -~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~-~~ 749 (934)
+++++++.+.+. -.-|-..|+.-..++.+.|+ +++++++++++ ...| |...|+.+...+... |+ .+
T Consensus 163 ~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~--~~~~~ 238 (306)
T 3dra_A 163 AKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF--DRSIT 238 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT--TCCGG
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc--CCChH
Confidence 777777777763 22234555555555666565 77788777766 3344 677888877777777 44 44
Q ss_pred HHHHHHHHHHhcC---CCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 750 LGRKAANMLFEME---PQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 750 ~a~~~~~~~~~~~---p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.....++++.+++ |.++..+..++++|.+.|+.++|.++++.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 239 QLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4566777777766 77777888888888888888888888888764
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.31 E-value=6.3e-06 Score=86.17 Aligned_cols=162 Identities=9% Similarity=-0.080 Sum_probs=113.2
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----ccc
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPDH-----VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQ 700 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 700 (934)
+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|+..|+...+...-..+ ...
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566777788888888888877764321111 11333444566778888888888887653111112 347
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC------C
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM----PITPN-----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ------N 765 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~------~ 765 (934)
|+.+...|...|++++|.+.+++. ...|+ ..++..+...|... |++++|...+++++++.++ -
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~--~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD--SRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH--hhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 788888888899999888888765 11222 25788888888888 9999999999998877532 1
Q ss_pred CchHHHHHHHHHcCCChHHH-HHHHHHHH
Q 046194 766 AVNYVLLANMYASGGKWEDV-AKARKAMK 793 (934)
Q Consensus 766 ~~~y~~l~~~~~~~g~~~~a-~~~~~~m~ 793 (934)
+..|..++.+|...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 55789999999999999999 77566543
No 122
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.29 E-value=4.9e-06 Score=96.35 Aligned_cols=144 Identities=15% Similarity=0.037 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHH
Q 046194 575 ATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFS 651 (934)
Q Consensus 575 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 651 (934)
|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56677777777666532 12456667777777777777777777776543 234567777777777777777777777
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc---CChHHHHHHHHhC
Q 046194 652 QMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA---GELDKIEEFINKM 724 (934)
Q Consensus 652 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~---g~~~~A~~~~~~m 724 (934)
+..+. .|+ ...+..+..++...|++++|.+.|++..+. .|+ ...+..+..++... |++++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77764 344 456666667777777777777777777663 333 56667777777777 7777777777765
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.28 E-value=9.7e-07 Score=91.67 Aligned_cols=191 Identities=9% Similarity=-0.056 Sum_probs=128.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCC--CC-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMP--VR-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLS 670 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 670 (934)
+...+..+...|.+.|++++|...|+... .| +...|..+..+|...|++++|+..+++..+. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34455666777778888888888887665 23 5567788888888888888888888888774 555 556777777
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcH
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~ 749 (934)
++...|++++|...|+...+. .|+ ...+...+....+.++...... .......++..+...+ ..+. . |+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~--~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-A--AERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-H--HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-H--HHHH
Confidence 888899999999988887663 232 1122222222222221111111 2222334444444444 3333 4 8889
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcC-CChHHHHHHHHHHHhC
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASG-GKWEDVAKARKAMKEA 795 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~-g~~~~a~~~~~~m~~~ 795 (934)
.|...++++++++|++......+..++... +++++|.+++..+.+.
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999888888888888887 7789999998877653
No 124
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.27 E-value=0.00092 Score=74.92 Aligned_cols=81 Identities=9% Similarity=-0.139 Sum_probs=38.7
Q ss_pred CChhHHHHHHhcCCC--CCcccHHHHHHHHHhCCC-hhHHHHHHHHHHHC-CCCC-ChhhHHHHHHHhh----ccCchHH
Q 046194 305 GTIDDSRSVFRFMIG--KDSVSWNTMISGLDQNGC-YEEAIMNFCAMRRD-GLMS-SNFSLISTLSSCA----SLGWIML 375 (934)
Q Consensus 305 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~a~~----~~~~~~~ 375 (934)
|.++.+..+|++... |++..|..-+.-..+.+. .+....+|+..... |..| +...|...+.-+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 556666666655533 455556555555444442 23444455554432 3222 3334444443332 1244556
Q ss_pred HHHHHHHHhh
Q 046194 376 GQQIHGEGLK 385 (934)
Q Consensus 376 a~~i~~~~~~ 385 (934)
++.+++.+++
T Consensus 108 vR~iy~rAL~ 117 (493)
T 2uy1_A 108 IRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 6666666665
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.25 E-value=6.7e-06 Score=72.64 Aligned_cols=114 Identities=17% Similarity=0.209 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 046194 663 VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PI-TPNSLIWRTVLGAC 740 (934)
Q Consensus 663 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 740 (934)
..+..+...+...|++++|.++|+.+.+. .+.+...+..+...+.+.|++++|..+++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555555666666677776666666553 1223555666667777777777777777665 22 23566777888888
Q ss_pred HhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 046194 741 CRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGG 780 (934)
Q Consensus 741 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 780 (934)
... |+.+.|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQ--GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHh--cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888 88999999999999999988888888888776544
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.23 E-value=3.4e-05 Score=76.08 Aligned_cols=168 Identities=10% Similarity=-0.036 Sum_probs=93.4
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchh----hHHHHHHHHHHHHH
Q 046194 514 EKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVA----TLERGMEVHACGVR 589 (934)
Q Consensus 514 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~----~~~~a~~i~~~~~~ 589 (934)
.+.|++..+..+..++..+-..|...+++++|+..|++..+.| +...+..+-..+.. + +.++|.+.+....+
T Consensus 6 ~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 3334333333355555555555555555566666555555543 23333334444444 3 55555555555554
Q ss_pred hCCCCcHhHHHHHHHHHHh----cCCHHHHHHHhccCCCCC-----cccccHHHHHHHH----cCChHHHHHHHHHHHHC
Q 046194 590 ACLEFDVVIGSALVDMYSK----CGRIDYASRFFDLMPVRN-----VYSWNSMISGYAR----HGHGDKALTLFSQMKLD 656 (934)
Q Consensus 590 ~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~ 656 (934)
.| ++..+..|..+|.. .+++++|.+.|+...+.+ ..++..|...|.. .+++++|+..|++..+.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 43 34455556666655 666777777776655432 3566666666666 66777777777777764
Q ss_pred CCCCChhhHHHHHHHHHhh-C-----cHHHHHHHHHHhHH
Q 046194 657 GPLPDHVTFVGVLSACSHA-G-----LVDEGFKHFKSMSQ 690 (934)
Q Consensus 657 g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~m~~ 690 (934)
.++...+..|...|... | +.++|..+|+...+
T Consensus 159 --~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 159 --SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp --SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 22334455555555432 2 67777777777665
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.23 E-value=6.6e-06 Score=73.33 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=77.9
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
..|..+...+.+.|++++|.+.+++. ...| +...|..+..++... |+++.|...++++++++|+++..|..++.+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL--MSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34556677777888888888888776 3344 567888888888888 9999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHh
Q 046194 777 ASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 777 ~~~g~~~~a~~~~~~m~~ 794 (934)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 999999999998887764
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.21 E-value=9e-06 Score=76.33 Aligned_cols=125 Identities=5% Similarity=-0.052 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 742 (934)
+..+...+...|++++|...|+...+. .+.+...+..+..++.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444555566667777777777666552 1223556666777777777777777777665 3333 46677788888888
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH--HHHcCCChHHHHHHHHHHH
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNAVNYVLLAN--MYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~--~~~~~g~~~~a~~~~~~m~ 793 (934)
. |+.+.|...+++++++.|.++..+..+.. .+...|++++|.+.++...
T Consensus 94 ~--~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 L--GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp T--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8 99999999999999999998888754444 4888899999988877654
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.21 E-value=6.8e-06 Score=73.74 Aligned_cols=113 Identities=8% Similarity=0.006 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGAC 740 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 740 (934)
.+..+...+...|++++|...|+...+ ..| +...+..+..+|...|++++|.+.+++. ...| +...|..+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344455555555666666666555544 222 3455555666666666666666666654 2233 466777777777
Q ss_pred HhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 046194 741 CRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 741 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
... |+.+.|...++++++++|.+...+..++.++...|+
T Consensus 95 ~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAM--KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHT--TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHH--hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 777 888888889998888999888888888888877654
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.20 E-value=7.4e-06 Score=73.10 Aligned_cols=116 Identities=9% Similarity=-0.034 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 046194 663 VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGAC 740 (934)
Q Consensus 663 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 740 (934)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555555666667777777777766652 1223556666777777777777777777665 2333 466777777888
Q ss_pred HhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 046194 741 CRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 741 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 782 (934)
... |+.+.|...+++++++.|+++..+..++.++...|++
T Consensus 91 ~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSL--NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHh--CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888 8999999999999999999988899999988888775
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.19 E-value=5.4e-06 Score=88.49 Aligned_cols=93 Identities=15% Similarity=-0.011 Sum_probs=79.8
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
..|..+..+|.+.|++++|++.+++. .+.| +...|..+..++... |+++.|...++++++++|+++..+..++.++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV--NDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 57788888888888999988888877 4444 577888888899998 9999999999999999999999999999999
Q ss_pred HcCCChHHH-HHHHHHHH
Q 046194 777 ASGGKWEDV-AKARKAMK 793 (934)
Q Consensus 777 ~~~g~~~~a-~~~~~~m~ 793 (934)
...|++++| .+.++.|.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998 44555553
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.19 E-value=0.0001 Score=76.79 Aligned_cols=158 Identities=8% Similarity=-0.112 Sum_probs=115.8
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCc--------c-cccHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----hhHHH
Q 046194 602 LVDMYSKCGRIDYASRFFDLMPVRNV--------Y-SWNSMISGYARHGHGDKALTLFSQMKLDGPL-PDH----VTFVG 667 (934)
Q Consensus 602 li~~y~~~g~~~~A~~~~~~~~~~~~--------~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ 667 (934)
.+..+...|++++|...++....... . .+..+...+...|++++|+..|++..+.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678888999999999887653211 1 2334566666778999999999999884322 221 25788
Q ss_pred HHHHHHhhCcHHHHHHHHHHhHHhhC----CCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 046194 668 VLSACSHAGLVDEGFKHFKSMSQVYG----LIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-------PITPN-SLIWR 734 (934)
Q Consensus 668 ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-------~~~p~-~~~~~ 734 (934)
+...|...|++++|..+|+++.+... ..|. ...|..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999999999875321 1122 447888999999999999999988876 22233 56788
Q ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHhc
Q 046194 735 TVLGACCRANCRK-TELGRKAANMLFEM 761 (934)
Q Consensus 735 ~ll~~~~~~~~~~-~~~a~~~~~~~~~~ 761 (934)
.+...+... |+ .+.|...+++++++
T Consensus 241 ~lg~~~~~~--g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKL--EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCcHHHHHHHHHHHHHH
Confidence 888888888 85 59999999888765
No 133
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.17 E-value=0.00027 Score=73.24 Aligned_cols=160 Identities=12% Similarity=0.084 Sum_probs=122.9
Q ss_pred CCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChH--HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCc------H
Q 046194 610 GRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGD--KALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL------V 678 (934)
Q Consensus 610 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 678 (934)
+++++++.+++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|..-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 678888888888763 46667887777777888888 9999999999864 2345566665556666665 8
Q ss_pred HHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhccCCCcHHHH
Q 046194 679 DEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDK-IEEFINKM-PI----TPNSLIWRTVLGACCRANCRKTELGR 752 (934)
Q Consensus 679 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~~~~~~~~a~ 752 (934)
++++++++.+... -+-|...|+.+..++.+.|+..+ +.++.++. .. ..+...+..|...+... |+.++|.
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~--~~~~~A~ 278 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ--KKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc--CCHHHHH
Confidence 9999999998873 33347788888889999888554 55677776 22 34678899999999888 9999999
Q ss_pred HHHHHHHh-cCCCCCchHHHHHH
Q 046194 753 KAANMLFE-MEPQNAVNYVLLAN 774 (934)
Q Consensus 753 ~~~~~~~~-~~p~~~~~y~~l~~ 774 (934)
.+++.+.+ .+|-....|...++
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHHh
Confidence 99999996 89988777765544
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.16 E-value=1.2e-05 Score=76.66 Aligned_cols=94 Identities=9% Similarity=0.119 Sum_probs=60.1
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhccCCCc--HHHHHHHHHHHhcCCCCCchHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGA-CCRANCRKT--ELGRKAANMLFEMEPQNAVNYVLLA 773 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~~~~~~--~~a~~~~~~~~~~~p~~~~~y~~l~ 773 (934)
..|..+..+|...|++++|.+.+++. ...| +...|..+... +... |+. +.|...++++++++|.++..+..++
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~la 122 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA--SQHMTAQTRAMIDKALALDSNEITALMLLA 122 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34444444444445555555444443 1222 34455555555 5555 776 7788888888888888877888888
Q ss_pred HHHHcCCChHHHHHHHHHHHh
Q 046194 774 NMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 774 ~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.+|...|++++|.+.++...+
T Consensus 123 ~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 123 SDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHh
Confidence 888888888888887777664
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.10 E-value=9e-06 Score=82.20 Aligned_cols=134 Identities=10% Similarity=-0.050 Sum_probs=96.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhh
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGR 710 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~ 710 (934)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 556777888888888888887764 465544444555688889999999988755431 1 111 2356778888999
Q ss_pred cCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHH
Q 046194 711 AGELDKIEEFINKM---PITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLA 773 (934)
Q Consensus 711 ~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~ 773 (934)
.|++++|++.+++. +..|. ...+..+..+++.. |+.++|...++++...+|+ +..+..|.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l--Gr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ--GNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999877 22254 33666777777788 9999999999999999997 65555443
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.10 E-value=1.5e-05 Score=68.85 Aligned_cols=97 Identities=18% Similarity=0.115 Sum_probs=81.3
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC--CCchHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ--NAVNYVLLA 773 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~y~~l~ 773 (934)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+... |+.+.|...+++++++.|. ++..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL--ERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 556677777888888888888888776 3333 567788888888888 9999999999999999999 999999999
Q ss_pred HHHHcC-CChHHHHHHHHHHHhCC
Q 046194 774 NMYASG-GKWEDVAKARKAMKEAE 796 (934)
Q Consensus 774 ~~~~~~-g~~~~a~~~~~~m~~~~ 796 (934)
.+|... |++++|.+.++...+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999 99999999988887543
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.07 E-value=4.6e-05 Score=79.51 Aligned_cols=161 Identities=8% Similarity=-0.096 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCC--CCc-------ccccHHHHHHHHcCChHHHHHHHHHHHHCCCC---CC--hhh
Q 046194 599 GSALVDMYSKCGRIDYASRFFDLMPV--RNV-------YSWNSMISGYARHGHGDKALTLFSQMKLDGPL---PD--HVT 664 (934)
Q Consensus 599 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~--~~t 664 (934)
+...+..|...|++++|.+.+....+ +.. ..+..+...+...|++++|+..|++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34456677788888888887765432 111 12334555667778889999988888753211 11 236
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-----cccHHHHHHHHhhcCChHHHHHHHHhC-CC------CCC-HH
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-----LEQFSCMVDLLGRAGELDKIEEFINKM-PI------TPN-SL 731 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~l~~~g~~~~A~~~~~~m-~~------~p~-~~ 731 (934)
+..+...|...|++++|..+|++..+.....|+ ...|..+...|.+.|++++|.+.+++. .+ .+. ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777778888899999999998888743222233 257788888899999999999888775 11 111 56
Q ss_pred HHHHHHHHHHhccCCCcHHH-HHHHHHHHhc
Q 046194 732 IWRTVLGACCRANCRKTELG-RKAANMLFEM 761 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a-~~~~~~~~~~ 761 (934)
++..+...+... |+.+.| ...+++++++
T Consensus 238 ~~~~lg~~y~~~--g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKL--EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCcHHHHHHHHHHHHHH
Confidence 777788888888 899998 7778877654
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.07 E-value=1.1e-05 Score=74.42 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=54.8
Q ss_pred ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHH
Q 046194 628 YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMV 705 (934)
Q Consensus 628 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li 705 (934)
..|..+...+.+.|++++|+..|++..+. .|+ ...|..+..++...|++++|+..|++..+ +.|+ +..|..+.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~~~~~~~lg 111 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCCcHHHHHHH
Confidence 35555666666667777777777766663 343 44555566666666666666666666655 2333 45555555
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 046194 706 DLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m 724 (934)
.+|.+.|++++|.+.|++.
T Consensus 112 ~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555544
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.05 E-value=4.2e-05 Score=74.49 Aligned_cols=153 Identities=11% Similarity=-0.000 Sum_probs=82.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh---CCCCC-cccHHHHHHHHhhcCCh
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVY---GLIPQ-LEQFSCMVDLLGRAGEL 714 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~y~~li~~l~~~g~~ 714 (934)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..+.. +..|. ...+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 01123344445555555666666666555554421 11111 34455566666666666
Q ss_pred HHHHHHHHhC-C---CCC-C----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC--C----CchHHHHHHHHHcC
Q 046194 715 DKIEEFINKM-P---ITP-N----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ--N----AVNYVLLANMYASG 779 (934)
Q Consensus 715 ~~A~~~~~~m-~---~~p-~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~--~----~~~y~~l~~~~~~~ 779 (934)
++|.+.+++. . ..| + ..++..+...+... |+++.|...+++++++.+. + ...+..++.+|...
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHF--GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 6666665554 1 111 1 23455666666666 7777777777776655322 1 12357888899999
Q ss_pred CChHHHHHHHHHHHh
Q 046194 780 GKWEDVAKARKAMKE 794 (934)
Q Consensus 780 g~~~~a~~~~~~m~~ 794 (934)
|++++|.+.+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999888776653
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=1.1e-05 Score=71.39 Aligned_cols=94 Identities=14% Similarity=0.029 Sum_probs=81.0
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
..+..+...+.+.|++++|...+++. ...| +...|..+...+... |+.+.|+..++++++++|+++..+..++.+|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45666778888889999999888887 4455 577888888888888 9999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHh
Q 046194 777 ASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 777 ~~~g~~~~a~~~~~~m~~ 794 (934)
...|++++|.+.++...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999888764
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.05 E-value=2e-05 Score=75.14 Aligned_cols=130 Identities=6% Similarity=0.054 Sum_probs=101.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHH-HhhcCCh
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDL-LGRAGEL 714 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~-l~~~g~~ 714 (934)
+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+. .| +...+..+..+ +.+.|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 345788899999999988753 234567888888899999999999999998873 34 46678888888 7789998
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 715 --DKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 715 --~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
++|.+.+++. ...| +...|..+...+... |+.+.|...+++++++.|+++.....+
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQ--ANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999887 4445 467888888888888 999999999999999999987655443
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.05 E-value=3e-05 Score=67.50 Aligned_cols=91 Identities=10% Similarity=0.134 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
+..++..+...|++++|.+.+++. ...| +...|..+...+... |+.+.|...++++++..|.++..+..++.+|..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK--GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444445555555555555555544 2222 344555555555555 666666666666666666666666666666666
Q ss_pred CCChHHHHHHHHHHH
Q 046194 779 GGKWEDVAKARKAMK 793 (934)
Q Consensus 779 ~g~~~~a~~~~~~m~ 793 (934)
.|++++|.+.++...
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 666666666655554
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.05 E-value=2.3e-06 Score=83.52 Aligned_cols=170 Identities=7% Similarity=-0.071 Sum_probs=100.3
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCC---CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCc
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPVR---NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL 677 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 677 (934)
..+......|+++.|.+.++..... ....|..+...+...|++++|+..|++..+. .|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------h
Confidence 3444455667777777777654321 3335666677777777777787777777763 3332111000 0
Q ss_pred HHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHH
Q 046194 678 VDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAA 755 (934)
Q Consensus 678 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~ 755 (934)
.+.-. .. .....|..+..+|.+.|++++|.+.+++. ...| +...|..+..++... |+++.|...+
T Consensus 79 ~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~ 145 (198)
T 2fbn_A 79 LLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF--GFLEEAKENL 145 (198)
T ss_dssp HHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred HHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--ccHHHHHHHH
Confidence 00000 00 01245666777777888888888877766 3344 566788888888888 9999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHcCCChHHHH-HHHHHHH
Q 046194 756 NMLFEMEPQNAVNYVLLANMYASGGKWEDVA-KARKAMK 793 (934)
Q Consensus 756 ~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~-~~~~~m~ 793 (934)
+++++++|+++..+..++.++...|+.+++. ..++.|.
T Consensus 146 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 146 YKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888888776 4444443
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.03 E-value=3.7e-05 Score=68.80 Aligned_cols=95 Identities=8% Similarity=0.078 Sum_probs=86.3
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...|..+...+.+.|++++|.+.+++. ...| +..+|..+...+... |+.+.|...+++++++.|.++..+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL--LEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 667888899999999999999999987 5555 677888888888888 999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|...|++++|.+.+++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999988765
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.02 E-value=1.2e-05 Score=74.15 Aligned_cols=108 Identities=7% Similarity=-0.044 Sum_probs=77.3
Q ss_pred CCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 046194 659 LPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWR 734 (934)
Q Consensus 659 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 734 (934)
.|+ ...+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++. ...| ++..|.
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 444 334555666677778888888877777652 34 3666777777788888888888877776 3344 456777
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHH
Q 046194 735 TVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVL 771 (934)
Q Consensus 735 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~ 771 (934)
.+..++... |+.+.|...+++++++.|+++.....
T Consensus 94 ~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 94 HAAECLLQX--GELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 777788878 89999999999999999888766433
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.99 E-value=9.4e-06 Score=82.09 Aligned_cols=181 Identities=8% Similarity=-0.063 Sum_probs=134.5
Q ss_pred hcCCHHHHHHHhccCCC--C-CcccccHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCChh--------------
Q 046194 608 KCGRIDYASRFFDLMPV--R-NVYSWNSM-------ISGYARHGHGDKALTLFSQMKLDGPLPDHV-------------- 663 (934)
Q Consensus 608 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 663 (934)
..++.+.|.+.|.+... | ....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46788888888887763 3 23477776 4556666666666666665544 344321
Q ss_pred --------hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCH----H
Q 046194 664 --------TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNS----L 731 (934)
Q Consensus 664 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~----~ 731 (934)
....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123355678899999999999988865 2354336666777999999999999999977444433 3
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEME--PQ-NAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
++..|..++... |+.++|+..++++.... |. .+.....++.++.+.|+.++|...++.+...
T Consensus 173 a~~~LG~al~~L--G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANL--ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 677888888888 99999999999998654 54 4457889999999999999999999999863
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.98 E-value=3.2e-05 Score=69.84 Aligned_cols=95 Identities=6% Similarity=0.043 Sum_probs=76.1
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...|..+...+.+.|++++|.+.+++. ...| +...|..+...+... |+++.|...++++++++|+++..+..++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM--QQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 556666777777777777777777665 3334 466777888888888 899999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|...|++++|.+.++...+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999998887765
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=5.5e-05 Score=69.14 Aligned_cols=92 Identities=8% Similarity=0.045 Sum_probs=46.8
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
.+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+... |+++.|...++++++++|+++..+..++.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL--EDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 3334444444444444444444443 33343 33444444444444 55555555555555555555555555555
Q ss_pred HHHcCCChHHHHHHHHHHH
Q 046194 775 MYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 775 ~~~~~g~~~~a~~~~~~m~ 793 (934)
+|...|++++|.+.+++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555444
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.98 E-value=6.4e-05 Score=66.12 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=85.5
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PIT-PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...|..+...+.+.|++++|.+.++++ ... .+..+|..+...+... |+.+.|...++++.+..|+++..+..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 467788899999999999999999987 333 4577888999999988 999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|...|++++|.+.++.+.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 9999999999999988875
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.97 E-value=5.4e-05 Score=65.86 Aligned_cols=108 Identities=14% Similarity=0.047 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 742 (934)
+..+...+...|++++|...|+...+. .+.+...+..+..++.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344444455555555555555555442 1123445555555555666666666655554 2233 35566667777777
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
. |+.+.|...++++++++|+++..+..++.+.
T Consensus 85 ~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 85 L--NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp T--TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred H--hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 7 7888888888888888887777666665553
No 151
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.96 E-value=3.1e-05 Score=72.54 Aligned_cols=85 Identities=9% Similarity=0.147 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeC
Q 046194 730 SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMK 809 (934)
Q Consensus 730 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 809 (934)
..+|..+..++... |+++.|...++++++++|.++..|..++.+|...|++++|.+.++...+
T Consensus 63 ~~~~~nla~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--------------- 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNI--GDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--------------- 125 (162)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhc--CcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh---------------
Confidence 45777888888888 9999999999999999999999999999999999999999999888764
Q ss_pred CEEEEEEcCCCCCCChH-HHHHHHHHHHHHHHHC
Q 046194 810 DGVHVFVAGDESHPEKD-LIYEKLKELNQKMRDA 842 (934)
Q Consensus 810 ~~~~~f~~~~~~~~~~~-~~~~~l~~l~~~m~~~ 842 (934)
.+|... .+...+..+...+++.
T Consensus 126 -----------l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 126 -----------NHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp -----------HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred -----------cCCCCHHHHHHHHHHHHHHHHHH
Confidence 245555 6677777777777643
No 152
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=2.8e-05 Score=87.16 Aligned_cols=113 Identities=6% Similarity=-0.020 Sum_probs=75.9
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~ 749 (934)
...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++... |+.+
T Consensus 17 ~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~--g~~~ 91 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL--GKFR 91 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH--TCHH
T ss_pred HHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHH
Confidence 3445555555555554441 232 445555555555556666666555554 3344 466788888888888 9999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH--HHcCCChHHHHHHHH
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANM--YASGGKWEDVAKARK 790 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~--~~~~g~~~~a~~~~~ 790 (934)
+|...++++++++|+++..+..++.+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999988 888999999988866
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.93 E-value=3.5e-05 Score=72.33 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=52.5
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
.|..+...+.+.|++++|.+.|++. ...| +...|..+...+... |+++.|...++++++++|+++..|..++.+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS--GQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444444555555555555555544 2223 344555555555555 66666666666666666666666666666666
Q ss_pred cCCChHHHHHHHHHHHh
Q 046194 778 SGGKWEDVAKARKAMKE 794 (934)
Q Consensus 778 ~~g~~~~a~~~~~~m~~ 794 (934)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666555543
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.93 E-value=2.9e-05 Score=75.74 Aligned_cols=152 Identities=13% Similarity=0.040 Sum_probs=80.4
Q ss_pred cCCHHHHHH---HhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHH
Q 046194 609 CGRIDYASR---FFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDE 680 (934)
Q Consensus 609 ~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~ 680 (934)
.|++++|.+ .+..-+.....++..+...|...|++++|+..|++..+. +..|. ...+..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555 333322223335555555566666666666666655441 11111 2345555556666677777
Q ss_pred HHHHHHHhHHhhCCCC-C----cccHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhccCCC
Q 046194 681 GFKHFKSMSQVYGLIP-Q----LEQFSCMVDLLGRAGELDKIEEFINKM----PITPN----SLIWRTVLGACCRANCRK 747 (934)
Q Consensus 681 a~~~~~~m~~~~~~~p-~----~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~ 747 (934)
|...+++..+...-.+ + ...+..+...+...|++++|.+.+++. ...++ ..++..+...+... |+
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~ 162 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE--KN 162 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC--cC
Confidence 7776666554321122 1 234556666677777777776666654 11111 22345566666666 77
Q ss_pred cHHHHHHHHHHHhcC
Q 046194 748 TELGRKAANMLFEME 762 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~ 762 (934)
.+.|...+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766553
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.93 E-value=7.4e-05 Score=66.37 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=85.3
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...+..+...+...|++++|.+.+++. ...| +...|..+...+... |+.+.|...++++++..|+++..+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL--GNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--hchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 566778889999999999999999987 3344 677888888888888 999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|...|++++|.+.++...+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 9999999999999988765
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.92 E-value=2.4e-05 Score=69.75 Aligned_cols=93 Identities=8% Similarity=0.024 Sum_probs=73.9
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc-------hHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV-------NYV 770 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~y~ 770 (934)
.+..++..+.+.|++++|++.|++. .+.| +...|..+..++... |+++.|...++++++++|+++. .|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE--KKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh--hhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3556677777778888888777776 4445 466788888888888 9999999999999999887754 577
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHh
Q 046194 771 LLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 771 ~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.++++|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788999999999999999887654
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=8e-05 Score=68.03 Aligned_cols=109 Identities=12% Similarity=-0.018 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVL 737 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 737 (934)
.+..+...+...|++++|.+.|+...+ ..|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444445555555555555555543 2343 345555566666666666666666554 2333 456677777
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
..+... |+.+.|...++++++++|+++..+..+..+..
T Consensus 107 ~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 107 QALEKL--GRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHH--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 777777 88888888888888888888776666665543
No 158
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.91 E-value=7.4e-06 Score=74.60 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITP-NSLIWRTVLGACCRA 743 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~ 743 (934)
+......+.+.|++++|+..|++..+. .|+...- +.....| +...|..+..++...
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~--------------------~a~~~~~~~a~a~~n~g~al~~L 70 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPE--------------------EAFDHAGFDAFCHAGLAEALAGL 70 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTT--------------------SCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcch--------------------hhhhhccchHHHHHHHHHHHHHC
Confidence 444555566677777777777776652 2331000 0000000 133677777777777
Q ss_pred cCCCcHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 744 NCRKTELGRKAANMLFEM-------EPQNAVNY----VLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~-------~p~~~~~y----~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|++++|...+++++++ +|+++..| ...+.+|...|++++|.+.+++..+
T Consensus 71 --gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 71 --RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7888888888888877 88888888 8888888888888888888777654
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.86 E-value=7.6e-05 Score=69.96 Aligned_cols=107 Identities=12% Similarity=0.040 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 046194 663 VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGA 739 (934)
Q Consensus 663 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 739 (934)
..+..+...+...|++++|+..|+...+. .| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+...
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44555666677777777777777777652 34 3666777777777788888887777766 3444 46788888888
Q ss_pred HHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 740 CCRANCRKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 740 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
+... |+++.|...++++++++|+++..+...+-
T Consensus 89 ~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDM--ADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHT--TCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHc--cCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 8888 99999999999999999999886655443
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.86 E-value=3.5e-05 Score=86.37 Aligned_cols=87 Identities=9% Similarity=0.019 Sum_probs=44.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhh
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGR 710 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~ 710 (934)
+...+.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|++.+++..+ +.|+ ...|..+..+|.+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 333444455555555555555552 333 34455555555555555555555555544 2233 4455555555555
Q ss_pred cCChHHHHHHHHhC
Q 046194 711 AGELDKIEEFINKM 724 (934)
Q Consensus 711 ~g~~~~A~~~~~~m 724 (934)
.|++++|.+.+++.
T Consensus 87 ~g~~~eA~~~~~~a 100 (477)
T 1wao_1 87 LGKFRAALRDYETV 100 (477)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555544
No 161
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.85 E-value=9.6e-05 Score=69.10 Aligned_cols=127 Identities=6% Similarity=-0.028 Sum_probs=74.4
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLL 708 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l 708 (934)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+. .+.+...|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34455566666677777777777666632 223455566666666777777777777776653 122355666677777
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 709 GRAGELDKIEEFINKM-PITP-NSLIWR--TVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 709 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~--~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
.+.|++++|.+.+++. ...| +...+. .+...+... |+.+.|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ--KAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHHHHHcccchHH
Confidence 7777777777777665 2233 333342 222234445 677777766665543
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.84 E-value=0.00054 Score=71.66 Aligned_cols=184 Identities=13% Similarity=0.073 Sum_probs=112.2
Q ss_pred HHhcC-CHHHHHHHhccCCC---CCcccccHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHH
Q 046194 606 YSKCG-RIDYASRFFDLMPV---RNVYSWNSMISGYARH-G-HGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVD 679 (934)
Q Consensus 606 y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 679 (934)
+...| .++++++.++.+.. ++..+|+.-...+.+. + ++++++++++++.+.. .-|...|..-.-...+.|.++
T Consensus 98 L~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 98 LTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccc
Confidence 33444 36666666665543 3344565555555554 5 6777777777777642 223445554444444444444
Q ss_pred --------HHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCC-------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046194 680 --------EGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGE-------LDKIEEFINKM-PITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 680 --------~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 742 (934)
+++++++++.+. -.-|...|+....++.+.|+ +++++++++++ ...| |...|+.+-+.+..
T Consensus 177 ~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 177 RISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 778888877763 22346667777777777765 67888888776 3444 67788877777776
Q ss_pred ccCCCc--------------------HHHHHHHHHHHhcC------CCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 743 ANCRKT--------------------ELGRKAANMLFEME------PQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 743 ~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
. |+. .........+.... +..+-....|+++|...|+.++|.++++.+.+
T Consensus 255 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 255 F--SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp T--TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c--CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6 432 22222222222222 35556678999999999999999999998864
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.84 E-value=0.0014 Score=68.30 Aligned_cols=191 Identities=10% Similarity=0.003 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC--CHHHHHHHhccCCC---CCcccccHHHHHHHHcCC-hHHHHHHH
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCG--RIDYASRFFDLMPV---RNVYSWNSMISGYARHGH-GDKALTLF 650 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~ 650 (934)
++++..+++.++.... -+..+++.-.-.+.+.| .++++...++.+.+ +|..+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4566666666665432 25555555555555666 37788888777763 455677776666667777 47888888
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhh--------------CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc----
Q 046194 651 SQMKLDGPLPDHVTFVGVLSACSHA--------------GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA---- 711 (934)
Q Consensus 651 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~---- 711 (934)
+++.+.. .-|...|+.....+.+. +.++++++++..... ..|+ ...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCcc
Confidence 8888753 22344555554444443 457778888777765 3344 55666555555554
Q ss_pred -------CChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 712 -------GELDKIEEFINKM-PITPNSLIWRTVLGACC-----RANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 712 -------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
+.++++++.++++ ...||. .|..+..+.. .. +..++....+.++.+++|-..+.|..+..-
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPL--LYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTT--TTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhccc--ccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 4577788877777 556654 4543222221 23 666777778888888888877777666544
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.82 E-value=7.9e-05 Score=66.13 Aligned_cols=106 Identities=9% Similarity=-0.059 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACC 741 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 741 (934)
+..+...+...|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 334444455555555555555555442 222 445555555555566666665555554 2333 3456666666666
Q ss_pred hccCCCcHHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 046194 742 RANCRKTELGRKAANMLFEME------PQNAVNYVLLANM 775 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~------p~~~~~y~~l~~~ 775 (934)
.. |+.+.|...++++++++ |.++.....+..+
T Consensus 84 ~~--~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AV--KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HT--TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HH--hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 66 77777777777777777 6665555555444
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.82 E-value=5e-05 Score=69.24 Aligned_cols=103 Identities=8% Similarity=-0.052 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACC 741 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 741 (934)
+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.+++. ...| ++..|..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 444455566677777777777766652 33 3556666677777777777777777665 3333 3456667777777
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
.. |+.+.|...+++++++.|+++......
T Consensus 98 ~~--g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QL--GDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HT--TCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred Hc--CCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 77 888888888888888888887765554
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.81 E-value=5.3e-05 Score=67.47 Aligned_cols=91 Identities=8% Similarity=0.022 Sum_probs=55.0
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--------cc
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ--------LE 699 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--------~~ 699 (934)
+|..+...+.+.|++++|+..|++..+. .|+ ...|..+..+|...|++++|++.|+...+. .|+ ..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHHH
Confidence 3445666667777777777777777763 454 455666666777777777777777766552 122 12
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
.|..+..++...|++++|++.+++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555566665555543
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.80 E-value=2e-05 Score=76.81 Aligned_cols=93 Identities=8% Similarity=-0.030 Sum_probs=73.1
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC-CC---CCC--------------HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM-PI---TPN--------------SLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m-~~---~p~--------------~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
.+..+...+.+.|++++|.+.+++. .. .|+ ..+|..+...+... |+++.|...+++++++
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN--KDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHh
Confidence 3444555555666666666665554 11 111 26788888888888 9999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 762 EPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 762 ~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+|+++..|..++.+|...|++++|.+.++...+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999988764
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.78 E-value=0.00011 Score=65.30 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=73.5
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC-------CchH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PIT-PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN-------AVNY 769 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~y 769 (934)
..|..+...+...|++++|...+++. ... .+..+|..+...+... |+++.|...+++++++.|++ +..|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK--GDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34556666777777777777777765 223 3566777777777777 88899999999888888776 7789
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 770 VLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 770 ~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..++.+|...|++++|.+.++...+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999999988875
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.75 E-value=7.2e-05 Score=66.58 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=56.7
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 046194 703 CMVDLLGRAGELDKIEEFINKM-PITPNS----LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN---AVNYVLLAN 774 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~y~~l~~ 774 (934)
.+...+.+.|++++|.+.+++. ...|+. ..|..+...+... |+++.|...++++++..|++ +..+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT--RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3445555566666666655554 222221 3555555566666 77777777777777777777 555777777
Q ss_pred HHHcCCChHHHHHHHHHHHh
Q 046194 775 MYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 775 ~~~~~g~~~~a~~~~~~m~~ 794 (934)
+|...|++++|.+.++.+.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776654
No 170
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.74 E-value=0.0001 Score=78.49 Aligned_cols=63 Identities=6% Similarity=-0.023 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 730 SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 730 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+|..+...+... |+++.|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 196 ~~~~~nla~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 196 LASHLNLAMCHLKL--QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46788888888888 9999999999999999999999999999999999999999999998875
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.72 E-value=0.00016 Score=80.64 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=75.1
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++... |+++.|...++++++++|++...+..++.+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~--g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM--NEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 356778888888899999998888877 4444 577888888999998 999999999999999999999999999999
Q ss_pred HHcCCChHHHHH-HHHHHH
Q 046194 776 YASGGKWEDVAK-ARKAMK 793 (934)
Q Consensus 776 ~~~~g~~~~a~~-~~~~m~ 793 (934)
+...|++++|.+ .++.|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 999999998864 344443
No 172
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.70 E-value=6e-05 Score=68.60 Aligned_cols=111 Identities=12% Similarity=-0.003 Sum_probs=79.7
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-------------hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCC
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDH-------------VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLI 695 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 695 (934)
.+......+.+.|++++|+..|++..+ +.|+. ..|..+..++.+.|++++|+..++...+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 455667788899999999999999998 45651 1455555555555666666555554433
Q ss_pred CCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHH----HHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchH
Q 046194 696 PQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIW----RTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNY 769 (934)
Q Consensus 696 p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~----~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y 769 (934)
+|++. .+.|+ ...| .....++... |++++|...++++++++|+|...+
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l--gr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGL--GRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHC--CCHHHHHHHHHHHHhcCCCcHHHH
Confidence 12211 34776 4578 8888899988 999999999999999999998775
Q ss_pred HHH
Q 046194 770 VLL 772 (934)
Q Consensus 770 ~~l 772 (934)
.-+
T Consensus 140 ~~~ 142 (159)
T 2hr2_A 140 PGK 142 (159)
T ss_dssp TTH
T ss_pred HHH
Confidence 443
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.69 E-value=0.00012 Score=65.83 Aligned_cols=98 Identities=2% Similarity=-0.148 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 046194 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLG 738 (934)
Q Consensus 662 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 738 (934)
...+..+...+...|++++|...|+...+. .|+ ...|..+..++...|++++|.+.+++. ...| +...|..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 445555666666666677776666666552 233 556666666777777777777766665 3333 4556777777
Q ss_pred HHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 739 ACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 739 ~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
.+... |+.+.|...+++++++.|+
T Consensus 86 ~~~~~--~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEM--ESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hhHHHHHHHHHHHHHHChh
Confidence 77777 7888888888888887776
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.68 E-value=0.0003 Score=60.32 Aligned_cols=96 Identities=11% Similarity=0.018 Sum_probs=66.8
Q ss_pred CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC--CcccHHH
Q 046194 626 NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP--QLEQFSC 703 (934)
Q Consensus 626 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~ 703 (934)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|++..+. .+. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHH
Confidence 44567777777788888888888888877742 223556666777777788888888888777662 122 3566667
Q ss_pred HHHHHhhc-CChHHHHHHHHhC
Q 046194 704 MVDLLGRA-GELDKIEEFINKM 724 (934)
Q Consensus 704 li~~l~~~-g~~~~A~~~~~~m 724 (934)
+..++.+. |++++|.+.+++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 77777777 7777777777665
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.66 E-value=3e-05 Score=67.89 Aligned_cols=83 Identities=8% Similarity=-0.011 Sum_probs=58.9
Q ss_pred hcCChHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 046194 710 RAGELDKIEEFINKM-PI---TPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWED 784 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m-~~---~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 784 (934)
..|++++|++.+++. .. .|+ ..+|..+...+... |+++.|...++++++++|+++..+..++.+|...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL--GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 356677777777665 33 243 45677777777777 888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 046194 785 VAKARKAMKE 794 (934)
Q Consensus 785 a~~~~~~m~~ 794 (934)
|.+.+++..+
T Consensus 80 A~~~~~~al~ 89 (117)
T 3k9i_A 80 GVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.64 E-value=7.9e-05 Score=66.24 Aligned_cols=61 Identities=8% Similarity=-0.033 Sum_probs=33.2
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+|+...+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 34455555666666666666666665532 22334444555555556666666666555544
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.64 E-value=0.00018 Score=66.56 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC------CCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEMEPQ------NAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++..+...+... |+.+.|...+++++++.+. .+..+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLL--QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555555555 6666666666666555321 234577888999999999999888776653
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.63 E-value=0.00035 Score=62.02 Aligned_cols=95 Identities=11% Similarity=0.065 Sum_probs=50.8
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCC-c---ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQ-L---EQFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACC 741 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~ 741 (934)
.+...|++++|...|+...+. .|+ . ..+..+..++.+.|++++|.+.+++. ...|+ ...+..+...+.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455555555555554442 122 1 24444555555555555555555544 22222 344555556666
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCchHH
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAVNYV 770 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~~y~ 770 (934)
.. |+.+.|...++++++..|+++....
T Consensus 88 ~~--g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 88 GE--GKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HT--TCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred Hc--CCHHHHHHHHHHHHHHCCCChHHHH
Confidence 66 7777777777777777777654433
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.62 E-value=0.0065 Score=63.49 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=135.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhchh-hHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc-C-CHHHH
Q 046194 540 ELLPKAMNLVWFMMQRGQRLDH-FTFATVLSACASVA-TLERGMEVHACGVRACLEFDVVIGSALVDMYSKC-G-RIDYA 615 (934)
Q Consensus 540 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~-g-~~~~A 615 (934)
+..++|++++.+++.. .|+. ..++.--..+...+ .++++++.++.+++...+ +..+++.-...+.+. + +++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 3344555555555543 2322 22333333333344 355555555555543222 444444444444444 5 67788
Q ss_pred HHHhccCCCC---CcccccHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCc-------
Q 046194 616 SRFFDLMPVR---NVYSWNSMISGYARHGHGD--------KALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL------- 677 (934)
Q Consensus 616 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------- 677 (934)
+++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.+.
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 8888877653 4456666555555555555 8999999998864 2345667766666666665
Q ss_pred HHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCCh--------------------HHHHHHHHhC-CC-------CC
Q 046194 678 VDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGEL--------------------DKIEEFINKM-PI-------TP 728 (934)
Q Consensus 678 ~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~--------------------~~A~~~~~~m-~~-------~p 728 (934)
+++++++++++.. ..|+ ...|+.+-.++.+.|+- .+..++..++ +. .+
T Consensus 224 ~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 224 LQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 7888888888876 3444 66777777777776653 4455555555 22 35
Q ss_pred CHHHHHHHHHHHHhccCCCcHHHHHHHHHHH-hcCCCCCchHHHHH
Q 046194 729 NSLIWRTVLGACCRANCRKTELGRKAANMLF-EMEPQNAVNYVLLA 773 (934)
Q Consensus 729 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~y~~l~ 773 (934)
+...+.-|...|... |+.+.|..+++.+. +.+|-....+...+
T Consensus 301 s~~al~~l~d~~~~~--~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 301 VPLALEYLADSFIEQ--NRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 777888898999888 99999999999986 67886655554433
No 180
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.62 E-value=0.00015 Score=74.94 Aligned_cols=111 Identities=3% Similarity=-0.146 Sum_probs=88.4
Q ss_pred ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 046194 661 DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVL 737 (934)
Q Consensus 661 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 737 (934)
+...+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456777778888999999999999988873 45 4778888999999999999999999886 5566 466788888
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
.++... |+++.|...++++++++|+++..+...++..
T Consensus 80 ~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 80 QCQLEM--ESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHHc--CCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 888888 9999999999999999988765554444433
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.61 E-value=0.00018 Score=63.25 Aligned_cols=95 Identities=9% Similarity=0.034 Sum_probs=52.9
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 742 (934)
..+...+.+.|++++|+..|+...+ ..|+ ...|..+..++.+.|++++|++.+++. .+.| +...|..|...+..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3344455556666666666665554 2232 455555666666666666666666554 3344 34556666666666
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCC
Q 046194 743 ANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
. |+.+.|...++++++++|++
T Consensus 98 ~--g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 E--HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp H--HHHHHHHHHHHHHHC-----
T ss_pred c--CCHHHHHHHHHHHHHhCcCC
Confidence 6 77777777777777777764
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.59 E-value=7.5e-05 Score=79.56 Aligned_cols=144 Identities=9% Similarity=-0.031 Sum_probs=70.5
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHh
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLG 709 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~ 709 (934)
|..+...+.+.|++++|+..|++..+ +.|+... +...|+.+++...+. ...|..+..+|.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~~ 241 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 44555666677888888888888776 3455332 223334444332221 125667777777
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH-cCCChHHHH
Q 046194 710 RAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA-SGGKWEDVA 786 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~-~~g~~~~a~ 786 (934)
+.|++++|++.+++. ...| +...|..+..++... |+++.|...++++++++|+++..+..|..+.. ..+..+++.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~--g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL--GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--TCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777766 3344 466777777777777 88888888888888888888888777777733 445666677
Q ss_pred HHHHHHHhC
Q 046194 787 KARKAMKEA 795 (934)
Q Consensus 787 ~~~~~m~~~ 795 (934)
+.++.|.+.
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777666543
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.0011 Score=73.21 Aligned_cols=192 Identities=7% Similarity=-0.069 Sum_probs=114.8
Q ss_pred HHHHhcCCHHHHHHHHHhhccC-C---Cc---------------chHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCH
Q 046194 502 SCYGKCGEMDDCEKIFARMSER-R---DE---------------VSWNSMISGYIHNELLPKAMNLVWFMMQRG-QRLDH 561 (934)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~~~-p---~~---------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~ 561 (934)
..+.+.|++++|.+.|..+.+. | +. .++..+...|...|++++|.+.+.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4456778888888887776553 1 11 124455666666666666666665554310 00111
Q ss_pred hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC----cccccH
Q 046194 562 FTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNS 632 (934)
Q Consensus 562 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 632 (934)
.+ ...+.+.+-..+...|+.+.|..++..... .+ ..++..
T Consensus 92 ~~-------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 92 KT-------------------------------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp HH-------------------------------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HH-------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 00 011122223333445556666555554321 11 125666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC----CCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-----cccHH
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGP----LPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-----LEQFS 702 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~----~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~ 702 (934)
+...|...|++++|+.++++....-. +|. ..++..++..|...|++++|..++++......-.++ ...+.
T Consensus 141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 220 (434)
T 4b4t_Q 141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDL 220 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 77888888888888888887765311 222 245777778899999999999999887653222222 35677
Q ss_pred HHHHHHhhcCChHHHHHHHHhC
Q 046194 703 CMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m 724 (934)
.++..+...|++++|...+.+.
T Consensus 221 ~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 221 MSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 8888889999999998877654
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.57 E-value=0.00019 Score=77.26 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=77.9
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...|..+..+|.+.|++++|++.+++. ...| +...|..+..++... |++++|...++++++++|+++..+..++.+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL--KEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 567888999999999999999999887 5666 467888888899888 999999999999999999999999999999
Q ss_pred HHcCCChHHHHH
Q 046194 776 YASGGKWEDVAK 787 (934)
Q Consensus 776 ~~~~g~~~~a~~ 787 (934)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887754
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.54 E-value=0.0011 Score=75.61 Aligned_cols=170 Identities=7% Similarity=-0.068 Sum_probs=133.6
Q ss_pred CHHHHHHHhccCCC--C-CcccccHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhC
Q 046194 611 RIDYASRFFDLMPV--R-NVYSWNSMISGYARHGH----------GDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAG 676 (934)
Q Consensus 611 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 676 (934)
.-++|.+.++.+.. | +..+|+.--..+...|+ ++++++.++++.+. .|. ...|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34567788877763 3 44577776666666666 89999999999985 455 566777777788888
Q ss_pred --cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcc-------
Q 046194 677 --LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAG-ELDKIEEFINKM-PITP-NSLIWRTVLGACCRAN------- 744 (934)
Q Consensus 677 --~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~------- 744 (934)
++++++++++++.+. -.-+...|+.-..++.+.| .+++++++++++ ...| |...|+.....+....
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999884 2334777888888888899 899999999998 5555 6788988888776620
Q ss_pred -----CCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 046194 745 -----CRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWED 784 (934)
Q Consensus 745 -----~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 784 (934)
.+.++++...++++++++|+|.+.|..+.+++...|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 0346889999999999999999999999999999998655
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00091 Score=73.99 Aligned_cols=178 Identities=8% Similarity=-0.055 Sum_probs=103.3
Q ss_pred HHHHHhcCCHHHHHHHhccCCCC-----Ccc---------------cccHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC
Q 046194 603 VDMYSKCGRIDYASRFFDLMPVR-----NVY---------------SWNSMISGYARHGHGDKALTLFSQMKLDG-PLPD 661 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~~-----~~~---------------~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 661 (934)
...+.+.|++++|.+.|..+.+. +.. ++..+...|...|++++|.+++.++...- -.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34466778888888887766421 111 24556777777788888887777765521 1122
Q ss_pred hhh----HHHHHHHHHhhCcHHHHHHHHHHhHHhh---CCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-----C--C
Q 046194 662 HVT----FVGVLSACSHAGLVDEGFKHFKSMSQVY---GLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-----P--I 726 (934)
Q Consensus 662 ~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-----~--~ 726 (934)
..+ ...+-..+...|..+++..+++...... +..+. ...+..++..|...|++++|.+++++. + -
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 211 1122222345677777777777665421 11222 345666777777777777777777664 1 1
Q ss_pred CCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 046194 727 TPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 727 ~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 782 (934)
+|. ..++..++..|... |+++.|...++++....+..+......+.++...|..
T Consensus 171 ~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKL--RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp STHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 222 33566666666666 7777777777777777665544444555554444433
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.47 E-value=0.00021 Score=66.69 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=59.1
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC-chHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA-VNYVLLAN 774 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~y~~l~~ 774 (934)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++... |+++.|...++++++++|+++ .....+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAA--WKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--hcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 456777888888888888888888776 4445 466788888888888 999999999999999999987 44445444
Q ss_pred H
Q 046194 775 M 775 (934)
Q Consensus 775 ~ 775 (934)
+
T Consensus 141 ~ 141 (162)
T 3rkv_A 141 V 141 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.47 E-value=0.00013 Score=77.71 Aligned_cols=113 Identities=6% Similarity=0.032 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRA 743 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 743 (934)
.+..+...+...|++++|...|+...+. .|+.. .+...|+.+++...+.. ..|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 3555666777888999999998887762 33321 23344555555544421 3778888888888
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 744 NCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
|+++.|...++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 244 --g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 --KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp --TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877543
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.43 E-value=0.00046 Score=74.32 Aligned_cols=110 Identities=9% Similarity=0.025 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~ 742 (934)
.+..+...+.+.|++++|++.|++..+.. |.. ...-..+++. ...| +..+|..+..++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 46677777888888888888888776621 100 0001111111 1233 35678888888888
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
. |+++.|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 286 ~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 286 M--SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp T--TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c--cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8 9999999999999999999999999999999999999999999988774
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.41 E-value=0.00032 Score=64.91 Aligned_cols=96 Identities=8% Similarity=0.020 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC-------CCCC-CHHH
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM-------PITP-NSLI 732 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m-------~~~p-~~~~ 732 (934)
+..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...+
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 444444455555555555555554432111111 234445555555555655555555443 1111 1234
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
+..+...+... |+.+.|...+++++++.
T Consensus 132 ~~~la~~~~~~--g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 132 CWSLGNAYTAL--GNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHH--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--cCHHHHHHHHHHHHHHH
Confidence 45555556566 67777777766666553
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.40 E-value=0.00095 Score=74.30 Aligned_cols=112 Identities=4% Similarity=-0.046 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046194 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACC 741 (934)
Q Consensus 662 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 741 (934)
...+..+...+.+.|++++|+..|++..+. .|+...+ .-++..+ ++. -....|..+..++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-----------~~~~~~~-~~~----~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGL-----------SEKESKA-SES----FLLAAFLNLAMCYL 328 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSC-----------CHHHHHH-HHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccC-----------ChHHHHH-HHH----HHHHHHHHHHHHHH
Confidence 345666666777777788887777777653 2221110 0011100 000 01457888888888
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.. |+++.|...++++++++|+++..|..++.+|...|++++|...+++..+
T Consensus 329 ~~--g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 329 KL--REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Hh--cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 88 9999999999999999999999999999999999999999999998875
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.39 E-value=0.00011 Score=64.11 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=36.0
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
..+..+..+|.+.|++++|.+.+++. ...| +..++..+..++... |+.++|...++++++..|+++..
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL--GRYEQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHH
Confidence 33444444444445555554444443 2223 244555555555555 66666666666666666666543
No 193
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.38 E-value=0.011 Score=61.39 Aligned_cols=179 Identities=12% Similarity=0.048 Sum_probs=128.9
Q ss_pred HHHHHHHhccCCC---CCcccccHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCc-HHHHHHHH
Q 046194 612 IDYASRFFDLMPV---RNVYSWNSMISGYARHGH--GDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL-VDEGFKHF 685 (934)
Q Consensus 612 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 685 (934)
++++..+++.+.. ++..+|+.-.-.+...|+ +++++++++++.+.. +-|...|..-.-.+.+.|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5667777776653 466788887777777774 899999999999964 3356667766667777887 69999999
Q ss_pred HHhHHhhCCCCCcccHHHHHHHHhhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCC---
Q 046194 686 KSMSQVYGLIPQLEQFSCMVDLLGRA--------------GELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCR--- 746 (934)
Q Consensus 686 ~~m~~~~~~~p~~~~y~~li~~l~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~--- 746 (934)
+.+.+. -.-|...|+....++.+. +.++++++++++. ...| |...|+-+-+.+.... |
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~-~~~~ 245 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGS-GRCE 245 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSS-CGGG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc-Cccc
Confidence 999874 233466677666666555 5688999999887 3445 6888987766665542 2
Q ss_pred -------CcHHHHHHHHHHHhcCCCCCchHHHHHHHH---HcCCChHHHHHHHHHHHh
Q 046194 747 -------KTELGRKAANMLFEMEPQNAVNYVLLANMY---ASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 747 -------~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~---~~~g~~~~a~~~~~~m~~ 794 (934)
.++.+...++.+++++|++.-.+..++.+. ...|..+++...+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 367889999999999999855544444332 246777788888877764
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.33 E-value=0.00036 Score=77.52 Aligned_cols=128 Identities=12% Similarity=0.127 Sum_probs=83.4
Q ss_pred HHhhCcHHHHHHHHHHhHHhhC--CCCC----cccHHHHHHHHhhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYG--LIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM---------PITPN-SLIWRT 735 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ 735 (934)
+...|++++|..++++..+... +-|+ ..+++.|..+|...|++++|..++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456666666666665544321 1122 445666667777777777776666554 23344 335677
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhc-----CCCCCch---HHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCC
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEM-----EPQNAVN---YVLLANMYASGGKWEDVAKARKAMKEAEVKKEA 801 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~---y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 801 (934)
|...|... |++++|+..+++++++ .|+.|.+ +..|..++...|++++|..+++.+++...+..|
T Consensus 399 La~~~~~~--G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHA--GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77777777 8888888888777654 4555443 567888899999999999999999876544433
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00021 Score=61.34 Aligned_cols=89 Identities=9% Similarity=-0.019 Sum_probs=70.2
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC------CchH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN------AVNY 769 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~y 769 (934)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++... |+++.|...++++++++|++ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL--GEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 445666777788888888888888776 3344 567788888888888 99999999999999999998 7778
Q ss_pred HHHHHHHHcCCChHHHHHH
Q 046194 770 VLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 770 ~~l~~~~~~~g~~~~a~~~ 788 (934)
..++.++...|+.++|.+.
T Consensus 82 ~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHhHhhhHhH
Confidence 8888888888877776443
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.27 E-value=0.00087 Score=56.41 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 729 NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 729 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+...|..+...+... |+++.|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKH--DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567888899999888 9999999999999999999999999999999999999999999887764
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.25 E-value=0.00068 Score=55.58 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=61.2
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+... |+.+.|...++++++++|.++..+..++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345566666777777777777777665 2333 466777788888888 899999999999999999998888888888
Q ss_pred HHcCC
Q 046194 776 YASGG 780 (934)
Q Consensus 776 ~~~~g 780 (934)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 77654
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.15 E-value=0.00082 Score=58.23 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=63.8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 716 KIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 716 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+|.+.+++. ...| +...|..+...+... |+++.|...++++++++|+++..|..++.+|...|++++|.+.++...
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH--EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555554 4445 467788888888888 999999999999999999999999999999999999999999988776
Q ss_pred h
Q 046194 794 E 794 (934)
Q Consensus 794 ~ 794 (934)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.10 E-value=0.00023 Score=64.56 Aligned_cols=83 Identities=10% Similarity=0.062 Sum_probs=58.9
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCC----------cHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 710 RAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRK----------TELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
|.+.+++|.+.+++. ...| +...|..+..++... ++ +++|+..++++++++|+++..|..++++|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l--~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL--SQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh--cccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 334445555555444 2333 344444444444443 33 569999999999999999999999999999
Q ss_pred cCC-----------ChHHHHHHHHHHHh
Q 046194 778 SGG-----------KWEDVAKARKAMKE 794 (934)
Q Consensus 778 ~~g-----------~~~~a~~~~~~m~~ 794 (934)
+.| ++++|.+.+++..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 885 89999999988875
No 200
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.08 E-value=0.00018 Score=75.95 Aligned_cols=75 Identities=9% Similarity=0.048 Sum_probs=55.3
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 602 LVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 602 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
-...|.+.++++++..+.++=. .|.-.|..-+..|+.+-|.++++-..+.| +...|...+-.|...=++|-+
T Consensus 460 AA~LYkkn~rw~qsi~l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvV 531 (624)
T 3lvg_A 460 AAYLFKGNNRWKQSVELCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVV 531 (624)
T ss_dssp HHHHHHTTCHHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHH
T ss_pred HHHHHHhcccHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHH
Confidence 3456888999999887665422 33444555667899999999999998866 556788888888887777777
Q ss_pred HHH
Q 046194 682 FKH 684 (934)
Q Consensus 682 ~~~ 684 (934)
+++
T Consensus 532 lEl 534 (624)
T 3lvg_A 532 LET 534 (624)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.08 E-value=0.0025 Score=52.48 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 727 TPNSLIWRTVLGACCRANC-RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 727 ~p~~~~~~~ll~~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
.+|+..|..+..++...+. ...+.|...++++++++|+++.....+++++...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788888888865520 2279999999999999999999999999999999999999999999987543
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.02 E-value=0.0012 Score=59.84 Aligned_cols=124 Identities=11% Similarity=0.036 Sum_probs=75.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcH----------HHHHHHHHHhHHhhCCCCC-cccHHHH
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLV----------DEGFKHFKSMSQVYGLIPQ-LEQFSCM 704 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~----------~~a~~~~~~m~~~~~~~p~-~~~y~~l 704 (934)
..+.+++++|++.+++..+. .|+ ...|..+..++...+++ ++|+..|++..+ +.|+ ...|.++
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 44566777888888887774 454 55666666666666654 466666666654 3444 4455556
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 046194 705 VDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWED 784 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 784 (934)
..+|...|.+ .|+... .. |++++|...++++++++|++......+-. .++
T Consensus 87 G~ay~~lg~l------------~P~~~~---------a~--g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~k 136 (158)
T 1zu2_A 87 GNAYTSFAFL------------TPDETE---------AK--HNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TAK 136 (158)
T ss_dssp HHHHHHHHHH------------CCCHHH---------HH--HHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHT
T ss_pred HHHHHHhccc------------Ccchhh---------hh--ccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHh
Confidence 6555555432 333210 12 68999999999999999998544333322 345
Q ss_pred HHHHHHHHHhC
Q 046194 785 VAKARKAMKEA 795 (934)
Q Consensus 785 a~~~~~~m~~~ 795 (934)
|.++.-.+...
T Consensus 137 a~el~~~~~~~ 147 (158)
T 1zu2_A 137 APQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHHHS
T ss_pred CHhccCccccc
Confidence 55555545443
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.01 E-value=0.0016 Score=72.26 Aligned_cols=121 Identities=12% Similarity=-0.088 Sum_probs=67.8
Q ss_pred HHcCChHHHHHHHHHHHHC---CCCC---C-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh----CC-CCC-cccHHHH
Q 046194 638 ARHGHGDKALTLFSQMKLD---GPLP---D-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY----GL-IPQ-LEQFSCM 704 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~---g~~p---~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~-~p~-~~~y~~l 704 (934)
..+|++++|+.++++..+. -+-| + ..+++.|..+|...|++++|..++++..+.+ |- .|+ ..+|+.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445555555555554431 1122 2 2346666666777777777777666654421 11 122 4566677
Q ss_pred HHHHhhcCChHHHHHHHHhC---------CCCCCHHHHHHHHHHHH-hccCCCcHHHHHHHHHHHh
Q 046194 705 VDLLGRAGELDKIEEFINKM---------PITPNSLIWRTVLGACC-RANCRKTELGRKAANMLFE 760 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m---------~~~p~~~~~~~ll~~~~-~~~~~~~~~a~~~~~~~~~ 760 (934)
..+|...|++++|..++++. +-.|+......++..+. .. +.++.|+..++++.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~--~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL--RMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 77777777777777776654 23344443334444444 44 677777777776654
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0038 Score=53.24 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 728 PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 728 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++...|..+...+... |+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 2 ~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQ--GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3456788888888888 9999999999999999999999999999999999999999999988875
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.66 E-value=0.013 Score=66.60 Aligned_cols=147 Identities=14% Similarity=0.037 Sum_probs=117.8
Q ss_pred CChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhCc----------HHHHHHHHHHhHHhhCCCCCcccHHHHHHHHh
Q 046194 641 GHGDKALTLFSQMKLDGPLPDHVT-FVGVLSACSHAGL----------VDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLG 709 (934)
Q Consensus 641 g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~ 709 (934)
...++|++.++++.+ +.|+..| |+.--.++.+.|+ +++++++++.+.+. -+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345788999999999 5787554 5555555666666 99999999999873 2233677888888888
Q ss_pred hcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC-----
Q 046194 710 RAG--ELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCR-KTELGRKAANMLFEMEPQNAVNYVLLANMYASG----- 779 (934)
Q Consensus 710 ~~g--~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~----- 779 (934)
+.| ++++|+++++++ ...| +...|+.-...+... | ..+.+...++++++.+|.|.++|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l--~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA--AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc--CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 999 779999999998 4444 688999988888888 7 889999999999999999999999999998874
Q ss_pred ---------CChHHHHHHHHHHH
Q 046194 780 ---------GKWEDVAKARKAMK 793 (934)
Q Consensus 780 ---------g~~~~a~~~~~~m~ 793 (934)
++++++.+..+...
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHH
Confidence 55677777765554
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.66 E-value=0.0089 Score=48.56 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 730 SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 730 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
...|..+...+... |+++.|...++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 9 ~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45778888888888 9999999999999999999999999999999999999999999888765
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.64 E-value=0.013 Score=52.63 Aligned_cols=115 Identities=5% Similarity=-0.077 Sum_probs=59.3
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHH
Q 046194 641 GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEF 720 (934)
Q Consensus 641 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~ 720 (934)
+++++|+..|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|..-.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~-------- 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGK-------- 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCS--------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCC--------
Confidence 34556666666666655 33322 333444455555566665555442 23334444444444300
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc----CCChHHHHHHHHHHHhCC
Q 046194 721 INKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS----GGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 721 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 796 (934)
... +|.++|...++++.+. .++..+..|+.+|.. .++.++|.+++++..+.|
T Consensus 72 --------------------g~~--~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 72 --------------------YVK--KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp --------------------SSC--CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred --------------------CCC--ccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 003 4555555555555544 345556666666666 666666666666665544
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.63 E-value=0.0023 Score=69.93 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=74.1
Q ss_pred HhhcCChHHHHHHHHhC------CCCC---C-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc-----CCCC---CchH
Q 046194 708 LGRAGELDKIEEFINKM------PITP---N-SLIWRTVLGACCRANCRKTELGRKAANMLFEM-----EPQN---AVNY 769 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m------~~~p---~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~y 769 (934)
+.+.|++++|++++++. -+.| + ..+++.|..+|... |++++|+..+++++++ .|++ ...|
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~--g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL--GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34455555555555443 0112 2 23566666677666 7777777777766543 2333 4458
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 046194 770 VLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMR 840 (934)
Q Consensus 770 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 840 (934)
..|+.+|..+|++++|..++++..+.- .+.-| ..||...++...+.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIM-RVTHG-----------------REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH-HHhcC-----------------CCChHHHHHHHHHHHHHHHHh
Confidence 899999999999999999888776421 11111 479999999888888888776
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.57 E-value=0.017 Score=60.31 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=28.5
Q ss_pred CCcccccHHHHHHHH--cCC---hHHHHHHHHHHHHCCCCCCh-hhHHHHHHHH
Q 046194 625 RNVYSWNSMISGYAR--HGH---GDKALTLFSQMKLDGPLPDH-VTFVGVLSAC 672 (934)
Q Consensus 625 ~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~ 672 (934)
.|...|...+.+... .+. ..+|+.+|++..+ ..|+- ..+..+.-++
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 466677777765443 333 4789999999998 46773 4444433333
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.50 E-value=0.0057 Score=54.95 Aligned_cols=107 Identities=4% Similarity=-0.113 Sum_probs=80.7
Q ss_pred cCCHHHHHHHhccCCCC-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----hCcHHHHHH
Q 046194 609 CGRIDYASRFFDLMPVR-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH----AGLVDEGFK 683 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~ 683 (934)
.++.++|.+.|+...+. +.... |...|...+..++|++.|++..+.| +......|...|.. .++.++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 35678899999877643 33444 6677777788899999999999975 55667777777777 789999999
Q ss_pred HHHHhHHhhCCCCCcccHHHHHHHHhh----cCChHHHHHHHHhC
Q 046194 684 HFKSMSQVYGLIPQLEQFSCMVDLLGR----AGELDKIEEFINKM 724 (934)
Q Consensus 684 ~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~~~~A~~~~~~m 724 (934)
+|+...+. -+...+..|..+|.. .+++++|.+++++.
T Consensus 83 ~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 83 YYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 99998773 345667777777777 67777777777765
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.24 E-value=0.0028 Score=69.12 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhc-----CCCC---CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEM-----EPQN---AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+++.|..+|... |++++|+..+++++++ .|++ ...|..|+.+|..+|++++|..++++..+
T Consensus 342 ~~~nLa~~y~~~--g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYM--QDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 455666666665 6666666666655543 2333 44588899999999999999988887654
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.21 E-value=0.01 Score=49.72 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=38.5
Q ss_pred cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 627 VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 627 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
...|..+...|...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666666666666666666663 343 44555666666666777777666666654
No 213
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.20 E-value=0.009 Score=51.44 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 645 KALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
+|+..|++..+. .|+ ...+..+...+...|++++|+..|+...+
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 47 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD 47 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345555555542 232 33444444455555555555555555544
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.93 E-value=0.063 Score=56.01 Aligned_cols=130 Identities=17% Similarity=0.121 Sum_probs=91.3
Q ss_pred CCChhhHHHHHHHHH--hh---CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHh----hcC-------ChHHHHHHH
Q 046194 659 LPDHVTFVGVLSACS--HA---GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLG----RAG-------ELDKIEEFI 721 (934)
Q Consensus 659 ~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~----~~g-------~~~~A~~~~ 721 (934)
+.|...|...+.+.. .. ....+|+.+|++..+ +.|+ ...|..+.-+|. ..+ .+.+|.+-.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 455677888887643 33 345789999999987 5677 445554333332 111 112233322
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 722 NKMP-ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 722 ~~m~-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+. ...++.++..+...+... |+.+.|...++++++++| +...|..++.++.-.|++++|.+.+++...
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~--gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVK--GKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3332 244677888877777777 999999999999999997 467889999999999999999999887764
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.87 E-value=0.018 Score=47.72 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=32.5
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchH
Q 046194 705 VDLLGRAGELDKIEEFINKM-PITP-NSL-IWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNY 769 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y 769 (934)
...+.+.|++++|.+.+++. ...| +.. .|..+...+... |+.+.|...++++++++|+++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL--GDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455555555555555554 2233 233 455555555555 555555555555555555555444
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.76 E-value=0.0031 Score=66.77 Aligned_cols=238 Identities=11% Similarity=0.101 Sum_probs=161.0
Q ss_pred chhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 046194 290 MVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCAS 369 (934)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 369 (934)
.+.+|+.|-.++.+.|++.+|++-|- ...|...|..+|....+.|.+++-+.++...++.. -++..=+.++-++++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 45567777788888888888887663 34577788899999999999999998887666543 344455678888888
Q ss_pred cCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC------------------------CCccc
Q 046194 370 LGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE------------------------HDQVS 425 (934)
Q Consensus 370 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~~ 425 (934)
.+++.+-++++ -.||..-.....+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 87765433222 236665666777777888888888888877653 36678
Q ss_pred hHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCC-CchhHHHHHHHHH
Q 046194 426 WNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVA-NETTIENALLSCY 504 (934)
Q Consensus 426 ~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~ 504 (934)
|-.+-.+|...+.+ .-|.-.--.+. +.|| .+..++..|...|-+++-..+++.-+ |++ ....+++-|.-.|
T Consensus 202 WKeV~~ACvd~~Ef-rLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEF-RLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTT-TTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHH-HHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence 88888888888877 54433322222 1122 22334555677777777777666544 333 4566888888888
Q ss_pred HhcCCHHHHHHHHHhhccC---C-------CcchHHHHHHHHHhcCChhHHHH
Q 046194 505 GKCGEMDDCEKIFARMSER---R-------DEVSWNSMISGYIHNELLPKAMN 547 (934)
Q Consensus 505 ~~~g~~~~A~~~~~~~~~~---p-------~~~~~~~li~~~~~~g~~~~A~~ 547 (934)
+|- +.++-.+-++..-.+ | ....|..++-.|++..+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 886 344444444433333 3 55679999999999999997754
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.76 E-value=0.028 Score=46.59 Aligned_cols=86 Identities=10% Similarity=0.107 Sum_probs=59.0
Q ss_pred HHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cc-cHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhc
Q 046194 668 VLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LE-QFSCMVDLLGRAGELDKIEEFINKM-PITPNS-LIWRTVLGACCRA 743 (934)
Q Consensus 668 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~-~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 743 (934)
....+...|++++|.+.|+...+. .|+ .. .|..+..+|.+.|++++|.+.+++. ...|+. ..|. .
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~ 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA--------R 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH--------H
Confidence 455677889999999999988773 344 56 7888888999999999999988876 344432 2221 1
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCC
Q 046194 744 NCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
+.++.+...++++...+|+++
T Consensus 75 --~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp --HHHHHHHHHHCCTTHHHHCCS
T ss_pred --HHHHHHHHHHHHHhccCcccc
Confidence 344555666666666666554
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.74 E-value=0.61 Score=39.96 Aligned_cols=140 Identities=11% Similarity=0.009 Sum_probs=97.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKI 717 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 717 (934)
.-.|..++..++..+.... .+..-++-+|.-...+-+-+-..+.++.+-+-|.+.| +|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHHH
Confidence 3467788888888887763 3444566666655666677777777777766544433 4444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 718 EEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 718 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
..-+-.++. +....+.-+...... |.-+.-..+...++.-+|.+|+...-++++|.+.|...+|.+++++.-++|+
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~--~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQ--GKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHT--TCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHh--ccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 444444321 222334455666667 8888888898888778888899999999999999999999999999998887
Q ss_pred c
Q 046194 798 K 798 (934)
Q Consensus 798 ~ 798 (934)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.72 E-value=0.23 Score=59.53 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=60.8
Q ss_pred HHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHH
Q 046194 605 MYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKH 684 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 684 (934)
....+|++++|.++.+.+. +...|..+...+.+.|+++.|++.|.++.+ |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3456777777777776653 456777777777778888888777777643 33334444445555554444
Q ss_pred HHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 685 FKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 685 ~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
-+..... ..++.-..+|.+.|++++|.+++.++
T Consensus 730 ~~~a~~~-------~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAETT-------GKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHc-------CchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3333221 12334445566667777777766665
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.61 E-value=0.23 Score=59.54 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=73.4
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHH
Q 046194 502 SCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGM 581 (934)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 581 (934)
+....+|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+...
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~---~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES---AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC---cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 44567888888888876663 567889999999999999999988887643 223333444455555554
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHH
Q 046194 582 EVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQ 652 (934)
Q Consensus 582 ~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 652 (934)
++-+.+...|. ++.-...|.++|++++|.+++.+ .+++++|+.+-++
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~------------------~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK------------------SQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH------------------cCChHHHHHHHHH
Confidence 44444444331 13334456667777777666544 4567777766554
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.61 E-value=0.036 Score=60.37 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
+++.|...|... |++++|+..++++++
T Consensus 384 ~l~nLa~~~~~q--g~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 384 MWLKLGRLYMGL--ENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--cCHHHHHHHHHHHHH
Confidence 455555555555 566666665555544
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.57 E-value=0.061 Score=48.14 Aligned_cols=65 Identities=11% Similarity=-0.036 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhccCC---CcHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 728 PNSLIWRTVLGACCRANCR---KTELGRKAANMLFEME-P-QNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 728 p~~~~~~~ll~~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++..+...+.+++.+. + ++++|...++.+++.+ | ++...+..|+-.|++.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S--~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRS--KYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4555555555555554 4 4456666666666665 4 3355566666666666666666666666553
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.45 E-value=0.058 Score=58.81 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=54.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh----C-CCCC-cccH
Q 046194 635 SGYARHGHGDKALTLFSQMKLD---GPLPD----HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY----G-LIPQ-LEQF 701 (934)
Q Consensus 635 ~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~y 701 (934)
..+.+.|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|..++++..+.+ | -.|+ ..+|
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3445566777777777776642 12233 2346667777777777777777777665432 1 1122 4556
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC
Q 046194 702 SCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 702 ~~li~~l~~~g~~~~A~~~~~~m 724 (934)
+.|..+|...|++++|+.++++.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 66777777777777777666654
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.12 E-value=0.05 Score=54.28 Aligned_cols=87 Identities=9% Similarity=0.085 Sum_probs=64.8
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHhc----cCCCcHHHHHHHHHHHhcCCCC-CchHHHHHHHHHcC-CChHH
Q 046194 715 DKIEEFINKM-PITPN---SLIWRTVLGACCRA----NCRKTELGRKAANMLFEMEPQN-AVNYVLLANMYASG-GKWED 784 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~----~~~~~~~a~~~~~~~~~~~p~~-~~~y~~l~~~~~~~-g~~~~ 784 (934)
.+|...+++. .+.|+ ...|.+|...|... + |+.+.|++.++++++++|+. ..+++.+++.|+.. |+.++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~g-Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFG-GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTT-CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccC-CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3444444443 34554 44566666666551 2 99999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCcCCCc
Q 046194 785 VAKARKAMKEAEVKKEAG 802 (934)
Q Consensus 785 a~~~~~~m~~~~~~~~~~ 802 (934)
+.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876665454
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.87 E-value=0.18 Score=42.15 Aligned_cols=68 Identities=9% Similarity=0.051 Sum_probs=45.4
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 703 CMVDLLGRAGELDKIEEFINKM-----P----ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
.|+..+.+.|+++.|...++.. + -.+...++..|..++... |+++.|...++++++++|+++.....+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ--GDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444444444444444444433 0 123456778888888888 999999999999999999987765444
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.45 E-value=0.22 Score=44.53 Aligned_cols=90 Identities=17% Similarity=0.053 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhC---cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHH
Q 046194 643 GDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAG---LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 643 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~ 719 (934)
...+.+-|.+..+.|. ++..+...+..++.+.+ ++++|+.+|+...+. . .|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~---------------------- 68 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKE---------------------- 68 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHH----------------------
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-Ccc----------------------
Confidence 3444555555555442 45444444555555555 455666666665553 1 110
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 720 FINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 720 ~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
-+...+-.|.-++.+. |+++.|.+.++.+++++|+|..
T Consensus 69 --------~~rd~lY~LAv~~~kl--~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 69 --------EQRDYVFYLAVGNYRL--KEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp --------HHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCTTCHH
T ss_pred --------chHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHH
Confidence 0123344555677777 9999999999999999998643
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.77 E-value=0.4 Score=39.06 Aligned_cols=68 Identities=9% Similarity=0.080 Sum_probs=46.6
Q ss_pred CCcccHHHHHHHHhhcCC---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 696 PQLEQFSCMVDLLGRAGE---LDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 696 p~~~~y~~li~~l~~~g~---~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
+++..+..+..++...++ .++|..++++. ...|+ +..+..+...+... |+++.|...++++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~--g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFIS--FRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCC
Confidence 345666666666654443 67777777776 45554 45556666666677 88888888888888888883
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.62 E-value=3.2 Score=41.42 Aligned_cols=111 Identities=9% Similarity=0.077 Sum_probs=74.7
Q ss_pred cCCHHHHHHHhccCCCCCcc--cccHHHH-HHHHc--CC------hHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHh
Q 046194 609 CGRIDYASRFFDLMPVRNVY--SWNSMIS-GYARH--GH------GDKALTLFSQMKLDGPLPD---HVTFVGVLSACSH 674 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~~~~~--~~~~li~-~~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~ 674 (934)
.|+..+-.+.+......|+. .|..++. .++.. |. ..+|...+++..+ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 34444444555555543332 5666554 33332 32 4567777888877 5676 4567777777777
Q ss_pred -----hCcHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhhc-CChHHHHHHHHhC
Q 046194 675 -----AGLVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGRA-GELDKIEEFINKM 724 (934)
Q Consensus 675 -----~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~-g~~~~A~~~~~~m 724 (934)
-|+.++|.+.|++..+ +.|+ ..++....+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4889999999888877 5563 77888888888884 8888888888876
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.40 E-value=0.74 Score=53.18 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=49.4
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
-..-|... |+++.|..+++++...-|.+..+|..|+.+|...|+|+.|.-.+..+
T Consensus 343 Qa~FLl~K--~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNR--GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455666 99999999999999999999999999999999999999999887766
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.39 E-value=1.5 Score=40.19 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=67.4
Q ss_pred HHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHH
Q 046194 605 MYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKH 684 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 684 (934)
....+|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+..+ |..+.--|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888777665 3566788888888888888888888877543 33344445556666555544
Q ss_pred HHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 046194 685 FKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITP 728 (934)
Q Consensus 685 ~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p 728 (934)
-+....+ .-++.-...+.-.|+++++.+++.+.+.-|
T Consensus 83 a~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~ 119 (177)
T 3mkq_B 83 QNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLP 119 (177)
T ss_dssp HHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChH
Confidence 3333221 124555556666788888888887775433
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.77 E-value=9.7 Score=34.84 Aligned_cols=100 Identities=12% Similarity=0.060 Sum_probs=70.9
Q ss_pred hchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHH
Q 046194 572 ASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFS 651 (934)
Q Consensus 572 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 651 (934)
.+.|+++.|.++...+ .+...|..|.+.....|+++-|.+.|..... +..+.-.|...|+.++-..+-+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence 4567777777765544 2567888899999999999999999888763 4456666777888877766666
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHh
Q 046194 652 QMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSM 688 (934)
Q Consensus 652 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 688 (934)
.....| -++.....+...|+++++.++|.+.
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 655554 2444445566789999998887554
No 232
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.44 E-value=17 Score=37.13 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=70.2
Q ss_pred HHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCChhhHHHHHHHhhccC
Q 046194 296 GLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNF----CAMRRDGLMSSNFSLISTLSSCASLG 371 (934)
Q Consensus 296 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~~ 371 (934)
++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-+.+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 344568888899999887632 233456667766555544 55566788888888777777666544
Q ss_pred c--h---HHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 046194 372 W--I---MLGQQIHGEGLKLG--LDSDVSVSNALLSLYADAGYLSRCLKVFF 416 (934)
Q Consensus 372 ~--~---~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 416 (934)
. . ........+-.+.| ..-|+.....+...|.+.+++.+|..-|-
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 2 1 12223333334444 34567777888888888888888877764
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.73 E-value=1.8 Score=37.14 Aligned_cols=92 Identities=17% Similarity=0.007 Sum_probs=53.0
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHH---HHHHHHhC-CCC-C-C-HHHHHHHHHHHHhc
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDK---IEEFINKM-PIT-P-N-SLIWRTVLGACCRA 743 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~---A~~~~~~m-~~~-p-~-~~~~~~ll~~~~~~ 743 (934)
.-.....+..+.+-|...... +. |+..+--.+..+|.+..+..+ ++.++++. ... | + ....-.|.-++.+.
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 333344455555555555442 22 666666666677777765555 66666665 222 3 1 12233444466666
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCC
Q 046194 744 NCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
|+++.|.+..+.+++.+|+|.
T Consensus 88 --g~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 88 --KEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp --TCHHHHHHHHHHHHHHCTTCH
T ss_pred --hhHHHHHHHHHHHHHhCCCCH
Confidence 777777777777777777753
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.42 E-value=0.68 Score=38.58 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCC-----CCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGL-----IPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN 729 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-----~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~ 729 (934)
...+...+...|+++.|...|+...+...- .+....+..|..+|.+.|++++|...+++. .+.|+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 334555566666666666666665553211 122455666667777777777777777665 34554
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.89 E-value=6.5 Score=34.31 Aligned_cols=67 Identities=9% Similarity=0.003 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHhcCCC-CCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 728 PNSLIWRTVLGACCRAN-CRKTELGRKAANMLFEMEPQ-NAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 728 p~~~~~~~ll~~~~~~~-~~~~~~a~~~~~~~~~~~p~-~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|+..+--.+.+++.+.. ..+..+|..+++.++.-+|. .-.....|+-.+++.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444444431 02334555555555555553 233444556666666666666666555553
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.78 E-value=4 Score=34.95 Aligned_cols=88 Identities=14% Similarity=0.032 Sum_probs=58.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHH---HHHHHHHhHHhhCCCC--CcccHHHHHHHHhhcCC
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDE---GFKHFKSMSQVYGLIP--QLEQFSCMVDLLGRAGE 713 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~y~~li~~l~~~g~ 713 (934)
.......+.+-|.+....|. |+..+-..+..++.+.....+ |+.+++...+. -.| .....-.|.-++.|.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 33344556666666666553 666665567777777776555 88888887663 224 24445566778889999
Q ss_pred hHHHHHHHHhC-CCCCC
Q 046194 714 LDKIEEFINKM-PITPN 729 (934)
Q Consensus 714 ~~~A~~~~~~m-~~~p~ 729 (934)
+++|.+.++.+ .++|+
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999988887 55664
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=87.18 E-value=14 Score=31.88 Aligned_cols=68 Identities=6% Similarity=-0.031 Sum_probs=41.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLE 593 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 593 (934)
+....+..++.....|+-++-.+++.++.. +.+|+...+..+..||.+.|+..++.+++.++-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 334445555666666666666666666433 24566666666677777777777777777766666653
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.86 E-value=13 Score=40.21 Aligned_cols=94 Identities=9% Similarity=0.128 Sum_probs=66.5
Q ss_pred cHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhhCcHHHHHHHHHHhHHh-hCCCCC----ccc
Q 046194 631 NSMISGYARHGHGDKALTLFSQMKLDGPLPDH-----VTFVGVLSACSHAGLVDEGFKHFKSMSQV-YGLIPQ----LEQ 700 (934)
Q Consensus 631 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~----~~~ 700 (934)
..|...|...|++.+|..++.++...-...+. ..+...+..|...+++..|..++.++... +...+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 35677888889999999998887653122222 23555666788999999999998887532 122222 456
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
|.+++..+...+++.+|...|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 788888899999999988777665
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.62 E-value=65 Score=38.12 Aligned_cols=215 Identities=8% Similarity=-0.018 Sum_probs=99.1
Q ss_pred HHHhcCCHHHHHHHHHhhccC---CCcc--hHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC---H-hHHHHHH-HH
Q 046194 503 CYGKCGEMDDCEKIFARMSER---RDEV--SWNSMISGYIHNELLPKAMNLVWFMMQRGQ--RLD---H-FTFATVL-SA 570 (934)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~---p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~---~-~t~~~ll-~a 570 (934)
+....|+.+++..+++..... .+.. .-..+.-|....|..++++.++.......- .-+ . +...+.+ -+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345667777777777766542 1111 122233455666666677777766554311 000 1 1111111 11
Q ss_pred Hhchhh-HHHHHHHHHHHHHhCCCCcH--hHHHHHHHHHHhcCCHHHHHHHhccCCC-CCcccc--cHHHHHHHHcCChH
Q 046194 571 CASVAT-LERGMEVHACGVRACLEFDV--VIGSALVDMYSKCGRIDYASRFFDLMPV-RNVYSW--NSMISGYARHGHGD 644 (934)
Q Consensus 571 ~~~~~~-~~~a~~i~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~--~~li~~~~~~g~~~ 644 (934)
.+-.|. -+++...+..++...- +.. ...-+|.-.|.-.|+-+....++..+.+ .+.... -++.-|+...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 111221 1233333333333211 111 1122333445566776666666654332 122222 22333444678888
Q ss_pred HHHHHHHHHHHCCCCCCh-hhHHH---HHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHH
Q 046194 645 KALTLFSQMKLDGPLPDH-VTFVG---VLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEF 720 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~~-~t~~~---ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~ 720 (934)
.+..+.+.+... +|. +-|.. +.-+|+..|+.....++++.+.++ ...+......+.-++.-.|+.+.+..+
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888877763 332 23332 333566777877777787777653 222222222222233334554444555
Q ss_pred HHh
Q 046194 721 INK 723 (934)
Q Consensus 721 ~~~ 723 (934)
++.
T Consensus 617 v~~ 619 (963)
T 4ady_A 617 VQL 619 (963)
T ss_dssp TTT
T ss_pred HHH
Confidence 443
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.42 E-value=34 Score=34.69 Aligned_cols=110 Identities=9% Similarity=0.046 Sum_probs=70.7
Q ss_pred HHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHhhccC
Q 046194 296 GLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMN----FCAMRRDGLMSSNFSLISTLSSCASLG 371 (934)
Q Consensus 296 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~~ 371 (934)
++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.+++++......++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 344567788888888887642 23345566776665554 455556678888877777776655432
Q ss_pred -----chHHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 046194 372 -----WIMLGQQIHGEGLKLG--LDSDVSVSNALLSLYADAGYLSRCLKVFF 416 (934)
Q Consensus 372 -----~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 416 (934)
..+..........+.| ..-|+.....+...|.+.|++.+|..-|-
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 2233333444444443 23477788888888999998888887765
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.04 E-value=5 Score=35.39 Aligned_cols=52 Identities=6% Similarity=0.013 Sum_probs=31.8
Q ss_pred CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 712 GELDKIEEFINKM-P-ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 712 g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
++.++|.++|+.+ . .+-=+.+|-....-=.++ |++..|.++..+++.+.|..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq--gnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQ--GNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHhccCCCc
Confidence 4555555555554 0 000155665555555555 88888888888888887765
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.46 E-value=49 Score=35.72 Aligned_cols=315 Identities=9% Similarity=-0.004 Sum_probs=151.3
Q ss_pred CChhHHHHHHHHHHHC-----CCCCChhhHHHHHHHhhccCchHHHHHHHHHHhh-hCCCCchh--HHHHHHHHHHhcCC
Q 046194 336 GCYEEAIMNFCAMRRD-----GLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLK-LGLDSDVS--VSNALLSLYADAGY 407 (934)
Q Consensus 336 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~--~~~~li~~y~~~g~ 407 (934)
|++++|++.+..+.+. +..-.......++..|...++++...+....+.+ +|..+... ..+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788999888776543 2333445577778888888888877665555443 34322221 12222333322332
Q ss_pred hH--HHHHHHhhCCCC-Cccc---------hHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCc
Q 046194 408 LS--RCLKVFFLMPEH-DQVS---------WNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMG 475 (934)
Q Consensus 408 ~~--~A~~~f~~~~~~-~~~~---------~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 475 (934)
.+ .-..+.+....- +-.. ...|...|-..|++ .+|.+++.++...-...+....
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~-~eA~~iL~~l~~Et~~~~~~~~------------- 175 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKI-DEAADILCELQVETYGSMEMSE------------- 175 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHCSSSCHHH-------------
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHHhcccHHH-------------
Confidence 22 122222222211 1111 13345556666666 6666666665532111111100
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC----C-C----cchHHHHHHHHHhcCChhHHH
Q 046194 476 KLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER----R-D----EVSWNSMISGYIHNELLPKAM 546 (934)
Q Consensus 476 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p-~----~~~~~~li~~~~~~g~~~~A~ 546 (934)
-..++...+..|...+++..|..++..+..+ + + ..-+..++..+...+++.+|.
T Consensus 176 -----------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~ 238 (445)
T 4b4t_P 176 -----------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVA 238 (445)
T ss_dssp -----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 0123344556677777777777776665321 1 1 123455566666777777777
Q ss_pred HHHHHHHHc-CCCCCHhHHHHHHH-----HHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc--CCHHHHHHH
Q 046194 547 NLVWFMMQR-GQRLDHFTFATVLS-----ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKC--GRIDYASRF 618 (934)
Q Consensus 547 ~l~~~m~~~-g~~p~~~t~~~ll~-----a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~--g~~~~A~~~ 618 (934)
+.|.+.... .+.-|...+..++. ........+.. .+.....+..--++...+..|+.+|... .+++.+.+.
T Consensus 239 ~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~-~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~ 317 (445)
T 4b4t_P 239 QYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQN-DLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKT 317 (445)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTH-HHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHH
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHH-HHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHH
Confidence 777766442 11112221111111 11111111111 1222222222234677788888888764 467888888
Q ss_pred hccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCC----CC-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHh
Q 046194 619 FDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGP----LP-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQV 691 (934)
Q Consensus 619 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 691 (934)
|.....++...... .+.......+.+.+.+.++ +| +.+++..+...+. =..+++..+...|...
T Consensus 318 ~~~~L~~~~~~~~~-------~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~--l~~~evE~~ls~mI~~ 386 (445)
T 4b4t_P 318 YEPVLNEDDLAFGG-------EANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLD--LTESQTETYISDLVNQ 386 (445)
T ss_dssp TCSSTTTCCSSCCC-------SCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT--SCHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhc-------chhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC--cCHHHHHHHHHHHHHC
Confidence 88776554432110 0000011122222222211 12 3445555544432 2477888888888775
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.43 E-value=37 Score=34.36 Aligned_cols=167 Identities=7% Similarity=0.026 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCCHhHHHHHHHHHhc
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNL----VWFMMQRGQRLDHFTFATVLSACAS 573 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~ 573 (934)
.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++ .+-..+.+++++..+...++..+..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4566678888899988888654322 24455665555444 3444456778887777777766554
Q ss_pred hh-----hHHHHHHHHHHHHHhCC--CCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHc---CCh
Q 046194 574 VA-----TLERGMEVHACGVRACL--EFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARH---GHG 643 (934)
Q Consensus 574 ~~-----~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 643 (934)
.. +..-..+......+.|- .-|+.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 32 11222223333333332 237888889999999999999999877532222333333333333322 222
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHh
Q 046194 644 DKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQV 691 (934)
Q Consensus 644 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 691 (934)
.++ |...-..++ -|.-.|++..|..+|+...+.
T Consensus 185 ~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred chH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 221 111111122 244568899999988877654
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.88 E-value=41 Score=34.36 Aligned_cols=166 Identities=14% Similarity=0.072 Sum_probs=93.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHhHHHHHHHHHhc
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLV----WFMMQRGQRLDHFTFATVLSACAS 573 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~~ 573 (934)
.++..-|.+.+++++|.+++-.-.. .+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA~------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVSQ------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHH------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 4566668889999999887654322 244456555544443 444456778887777777776655
Q ss_pred hhhH--H---HHHHHHHHHHHhCC--CCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHH
Q 046194 574 VATL--E---RGMEVHACGVRACL--EFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKA 646 (934)
Q Consensus 574 ~~~~--~---~a~~i~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 646 (934)
...- + -..+....-.+.|- .-|+.....+...|.+.+++.+|+.-|-.-.++....+..|+.-+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-- 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-- 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--
Confidence 4421 1 11222223333342 3378888889999999999999998874322222234443333333222111
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 647 LTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 647 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
.+|...-..++ -|.-.+++..|..+|+...+
T Consensus 185 ------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 11111222222 35556788888887777665
No 245
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=83.50 E-value=37 Score=38.48 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=25.8
Q ss_pred HHHHHhhccCChhHHHHHHhcCCC---CCcccHHHHHHHHHhC
Q 046194 296 GLVNMYAKCGTIDDSRSVFRFMIG---KDSVSWNTMISGLDQN 335 (934)
Q Consensus 296 ~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 335 (934)
++|--+.+||++++|.++.++... .-...+-..+..|+.+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 456677899999999999877642 2224677777777743
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.25 E-value=9.7 Score=30.55 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHC
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLD 656 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 656 (934)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555555444433 22222222334668899999999999999999999977654 4788888888888888887
Q ss_pred CCCCChhhHHH
Q 046194 657 GPLPDHVTFVG 667 (934)
Q Consensus 657 g~~p~~~t~~~ 667 (934)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 7 666555543
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.78 E-value=10 Score=30.47 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHC
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLD 656 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 656 (934)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555555444433 22222222334568899999999999999999999977654 4778888888888888877
Q ss_pred CCCCChhhHHH
Q 046194 657 GPLPDHVTFVG 667 (934)
Q Consensus 657 g~~p~~~t~~~ 667 (934)
| .|....|..
T Consensus 99 g-~p~~q~Fa~ 108 (116)
T 2p58_C 99 Q-DPRIQTFVN 108 (116)
T ss_dssp C-CHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 565555543
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.77 E-value=1.1e+02 Score=36.13 Aligned_cols=261 Identities=14% Similarity=0.038 Sum_probs=132.1
Q ss_pred HHHhcCChHHHHHHHhhCCCC----Cc--cchHHHHHHHHhCCccHHHHHHHHHHHHHcCC--CCC---ccc-H-H--HH
Q 046194 401 LYADAGYLSRCLKVFFLMPEH----DQ--VSWNSVIGAFADSEALVSEAVKYYLDMRRAGW--SPN---GVT-F-I--NI 465 (934)
Q Consensus 401 ~y~~~g~~~~A~~~f~~~~~~----~~--~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~--~p~---~~t-~-~--~l 465 (934)
+....|+.+++..+++..... +. ..-..+.-+....|.. ++++.++.......- .-+ ... . . .+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 355678888888888876542 11 1222334456677777 778887777654321 000 111 1 1 11
Q ss_pred HHHHhccCCchHHHHHHHHHHHhcCCCchh----HHHHHHHHHHhcCCHHHHHHHHHhhccCCCcch--HHHHHHHHHhc
Q 046194 466 LAAASSFSMGKLGHQVHAQVIKYNVANETT----IENALLSCYGKCGEMDDCEKIFARMSERRDEVS--WNSMISGYIHN 539 (934)
Q Consensus 466 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~li~~~~~~ 539 (934)
--++...++- .+.+.+..++.. .+.. ..-+|.-.|.-.|+-+....++..+.+..+... .-++.-|+...
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCH-HHHHHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 1122222332 333333333321 1111 112333344556777777777776554312222 22333345577
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhHHH---HHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 046194 540 ELLPKAMNLVWFMMQRGQRLDHFTFA---TVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 540 g~~~~A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 616 (934)
|+.+.+-.+.+.+... -.|. .-|. ++.-+|+..|+.....+++..+.... ..++.-.-.+.-+....|+.+.+.
T Consensus 538 g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 538 GRQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 8888888888887763 1222 2333 23346788888888887888777632 122322222222333467766777
Q ss_pred HHhccCCC-CCccccc--HHHHHHHHcCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046194 617 RFFDLMPV-RNVYSWN--SMISGYARHGHG-DKALTLFSQMKLDGPLPDHVTFVGVLSAC 672 (934)
Q Consensus 617 ~~~~~~~~-~~~~~~~--~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 672 (934)
++++.+.+ .|...-. .+.-|....|.. .+|++++..+.. .+|..+-...+.++
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 77765542 3333222 233344444444 578888888865 44544433333333
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.99 E-value=11 Score=33.93 Aligned_cols=28 Identities=4% Similarity=-0.028 Sum_probs=19.5
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKMPIT 727 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m~~~ 727 (934)
.---+..+|.+.|++++|+.+++..|.+
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 3334667777888888888888877543
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.11 E-value=8.4 Score=33.17 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=33.0
Q ss_pred CCcccHHHHHHHHhhcCCh---HHHHHHHHhC-CCCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 696 PQLEQFSCMVDLLGRAGEL---DKIEEFINKM-PITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 696 p~~~~y~~li~~l~~~g~~---~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
|+..+--.+..++.+.... .+++.++++. ...|. ...+-.|.-++.+. |+++.|.+..+.+++++|+|
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl--gdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL--GEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHTTCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhCCCC
Confidence 4444444444455555433 2344554444 22231 22333444455555 66666666666666666664
No 251
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.00 E-value=39 Score=33.25 Aligned_cols=207 Identities=13% Similarity=0.114 Sum_probs=115.7
Q ss_pred hHHHHHHhhcCChhhHHHhhccCCCCChh----hHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcc---cHHHHHHHh
Q 046194 24 NTLINVYVRVGDLASASKLFDEMPDRNSV----SWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRY---ALGSVLRAC 96 (934)
Q Consensus 24 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~ 96 (934)
++.+...++.|+++-...+++.-...+.. -++. +...++.|+.+ +++.+.+.|..|+.. ..+.+..++
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcH-HHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 45666777888888888888765543322 2333 33445556653 555666777665532 233444444
Q ss_pred hhcCCCChhhhhHHHHHHHHhcCCCCch--hhHHHHHHhhhCCCChHHHHHHhhccCCCCcc-------------cHHHH
Q 046194 97 QECGPSGFKFGMQVHCLVLKSNQTFDGL--VSNVLIAMYGSCLESTDCARRIFEEIETRDLI-------------SWNSI 161 (934)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~~-------------~~~~l 161 (934)
.. +.. ++...+++.|..++.. ...+.+...++. |+.+..+.+++.-..++.. .++.
T Consensus 81 ~~---~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~- 151 (285)
T 1wdy_A 81 IA---GSV----KLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA- 151 (285)
T ss_dssp HH---TCH----HHHHHHHHTTCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH-
T ss_pred Hc---CCH----HHHHHHHHcCCCCCccCcccCCHHHHHHHh-CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcH-
Confidence 32 443 3455566667655432 223444555666 8888888888765544322 2233
Q ss_pred HHHHHcCCCchHHHHHHHHHHHc-cCCCCCCCC---ceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccc--hh
Q 046194 162 ISVYSQRGDTISVFKLFSRMQRE-GFRYSLKPN---EYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYV--GS 235 (934)
Q Consensus 162 i~~~~~~g~~~~A~~l~~~m~~~-g~~~~~~p~---~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~--~~ 235 (934)
+...++.|+.+-+ +.+.+. |. .++ ....+.+..++. .+.... ..++.+.+.+.|..++... ..
T Consensus 152 L~~A~~~~~~~~v----~~Ll~~~~~----~~~~~~~~g~t~l~~a~~-~~~~~~--~~~i~~~Ll~~g~~~~~~~~~g~ 220 (285)
T 1wdy_A 152 LMDAAEKGHVEVL----KILLDEMGA----DVNACDNMGRNALIHALL-SSDDSD--VEAITHLLLDHGADVNVRGERGK 220 (285)
T ss_dssp HHHHHHHTCHHHH----HHHHHTSCC----CTTCCCTTSCCHHHHHHH-CSCTTT--HHHHHHHHHHTTCCSSCCCTTSC
T ss_pred HHHHHHcCCHHHH----HHHHHhcCC----CCCccCCCCCCHHHHHHH-ccccch--HHHHHHHHHHcCCCCCCcCCCCC
Confidence 3334455665433 334433 44 333 223334444443 343333 5778888888888777643 34
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 046194 236 ALVSGFARLGNFYYARKIFE 255 (934)
Q Consensus 236 ~li~~~~~~g~~~~A~~l~~ 255 (934)
+.+...++.|+.+-+..+++
T Consensus 221 t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 221 TPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHh
Confidence 55666777888887777776
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.99 E-value=1.2e+02 Score=34.32 Aligned_cols=341 Identities=8% Similarity=-0.006 Sum_probs=160.9
Q ss_pred HHhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccc
Q 046194 131 AMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLS 210 (934)
Q Consensus 131 ~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~ 210 (934)
...++. ++......++.. +..+...--....+....|+..+|......+...| .........++..+.+.|.+
T Consensus 80 ~~l~~~-~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-----~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 80 NELARR-EDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-----KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHT-TCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-----SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHhC-CCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-----CCCcHHHHHHHHHHHHCCCC
Confidence 334444 788888887776 32233333446667778899999999999988887 34455555555555555444
Q ss_pred cchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCc
Q 046194 211 GSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDM 290 (934)
Q Consensus 211 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~ 290 (934)
.. ... -.-+......|+...|..+...+.... .
T Consensus 153 t~------------------~~~-~~R~~~al~~~~~~~a~~l~~~l~~~~----~------------------------ 185 (618)
T 1qsa_A 153 DP------------------LAY-LERIRLAMKAGNTGLVTVLAGQMPADY----Q------------------------ 185 (618)
T ss_dssp CH------------------HHH-HHHHHHHHHTTCHHHHHHHHHTCCGGG----H------------------------
T ss_pred CH------------------HHH-HHHHHHHHHCCCHHHHHHHHHhCCHHH----H------------------------
Confidence 32 222 223355667778888877776653211 0
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHhcCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH----H
Q 046194 291 VAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSV---SWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLIS----T 363 (934)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----l 363 (934)
.....++..+.+- ..+........ ++.. ....-+.-+.+. +.+.|...|....+.. ..+...... +
T Consensus 186 -~~a~~~~al~~~p---~~~~~~~~~~~-~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~i 258 (618)
T 1qsa_A 186 -TIASAIISLANNP---NTVLTFARTTG-ATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIV 258 (618)
T ss_dssp -HHHHHHHHHHHCG---GGHHHHHHHSC-CCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCh---HhHHHHHhccC-CChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHH
Confidence 0111112222111 11111111111 1110 111112222332 5566666666665432 122222211 2
Q ss_pred HHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC--ccchH-HHHHHHHhCCccH
Q 046194 364 LSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHD--QVSWN-SVIGAFADSEALV 440 (934)
Q Consensus 364 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~--~~~~~-~li~~~~~~g~~~ 440 (934)
.......+....+...+....... .+..+..-.+....+.|+++.|...|..|.... ..-|. =+..++.+.|+.
T Consensus 259 a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~- 335 (618)
T 1qsa_A 259 AWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE- 335 (618)
T ss_dssp HHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH-
T ss_pred HHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCH-
Confidence 222233332333333333332222 223333344444556788888888888887632 12221 123456677888
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCC---chh---HHHHHHHHHHhcCCHHHHH
Q 046194 441 SEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVAN---ETT---IENALLSCYGKCGEMDDCE 514 (934)
Q Consensus 441 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~---~~~---~~~~li~~~~~~g~~~~A~ 514 (934)
++|..+|..+... .+|-.++.+ .++|..... .. . .+.+ ... -.-..+..+...|....|.
T Consensus 336 ~~a~~~~~~~a~~------~~fYg~lAa-~~Lg~~~~~-~~----~--~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~ 401 (618)
T 1qsa_A 336 AEAKEILHQLMQQ------RGFYPMVAA-QRIGEEYEL-KI----D--KAPQNVDSALTQGPEMARVRELMYWNLDNTAR 401 (618)
T ss_dssp HHHHHHHHHHHTS------CSHHHHHHH-HHTTCCCCC-CC----C--CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcC------CChHHHHHH-HHcCCCCCC-CC----C--CCChhHHhhhccChHHHHHHHHHHCCChhhHH
Confidence 8888888887642 234333322 222211000 00 0 0000 000 0012234455677777777
Q ss_pred HHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHH
Q 046194 515 KIFARMSERRDEVSWNSMISGYIHNELLPKAMNLV 549 (934)
Q Consensus 515 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 549 (934)
..+..+....+......+.......|.++.++...
T Consensus 402 ~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 402 SEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 77776655433332333333334566666655443
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=74.84 E-value=10 Score=40.22 Aligned_cols=66 Identities=6% Similarity=0.132 Sum_probs=43.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHH----hhCCCCCcc
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQ----VYGLIPQLE 699 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 699 (934)
++..+...|++++|+..++.+.... +-+...+..++.++...|+..+|++.|+...+ +.|+.|...
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 4555666777777777777776642 33566777777777778888888777776544 346666543
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.19 E-value=29 Score=30.25 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=24.8
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 735 TVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 735 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
.|.-++.+. |+++.|++..+.+++++|+|.
T Consensus 82 yLAvg~ykl--~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 82 YLTIGCYKL--GEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp HHHHHHHTT--TCHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHh--hhHHHHHHHHHHHHhcCCCcH
Confidence 344577777 999999999999999999963
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.97 E-value=1.3e+02 Score=33.94 Aligned_cols=52 Identities=12% Similarity=-0.099 Sum_probs=34.0
Q ss_pred HHhhccCChhHHHHHHhcCCCCC--cc-cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046194 299 NMYAKCGTIDDSRSVFRFMIGKD--SV-SWNTMISGLDQNGCYEEAIMNFCAMRR 350 (934)
Q Consensus 299 ~~~~~~g~~~~A~~~f~~~~~~~--~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (934)
....+.|+.+.|...|+.|+... .. ..-=+..++.+.|+.++|..+|..+..
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33446688888888888886642 11 122234456677888888888888754
No 256
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=72.42 E-value=33 Score=30.29 Aligned_cols=63 Identities=10% Similarity=-0.003 Sum_probs=39.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHH
Q 046194 539 NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSAL 602 (934)
Q Consensus 539 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 602 (934)
.++.++|.++|+.++..+-+- ...+.....--.+.|++..|+++++..+..+..|....-.++
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 467778888888876653222 444444444445678888888888888777666544433333
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=72.23 E-value=14 Score=29.98 Aligned_cols=60 Identities=10% Similarity=0.146 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHH
Q 046194 645 KALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVD 706 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 706 (934)
+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44555566666678899999999999999999999999999988875 4444556777764
No 258
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=72.17 E-value=52 Score=33.67 Aligned_cols=102 Identities=10% Similarity=-0.059 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCchh--HHHHHHHHhhccCChhHHHHHHhcC----CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 046194 278 VHGYLIRSGLFDMVA--VGNGLVNMYAKCGTIDDSRSVFRFM----IGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRD 351 (934)
Q Consensus 278 ~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (934)
+...+++.|..++.. -..+.+...++.|..+....+++.- ..+|..-++.|..+ ++.|+. ++.+.+.+.
T Consensus 221 i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~----~iv~~Ll~~ 295 (337)
T 4g8k_A 221 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLK----KIAELLCKR 295 (337)
T ss_dssp HHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCH----HHHHHHHTT
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCH----HHHHHHHHC
Confidence 344455556544322 1223344556677777777666532 11233333344333 344553 344445666
Q ss_pred CCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCc
Q 046194 352 GLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSD 391 (934)
Q Consensus 352 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 391 (934)
|..+|..+ .+...+..|+.+ +.+.+++.|-.+|
T Consensus 296 GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 296 GASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp SCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred CCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 77776655 233333344443 4455566665554
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=71.94 E-value=15 Score=31.60 Aligned_cols=86 Identities=12% Similarity=0.081 Sum_probs=55.6
Q ss_pred HHHHHHHHHH-HC-CCCCChhhHHHHHHHHHhhC---cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHH
Q 046194 645 KALTLFSQMK-LD-GPLPDHVTFVGVLSACSHAG---LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 645 ~A~~l~~~m~-~~-g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~ 719 (934)
+-+..|++-- ++ +-.|+..|-..+..++.+.. +..+|+.+++.+.+. +-.-..+.+-.|.-++.|.|++++|.+
T Consensus 21 eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~ 99 (134)
T 3o48_A 21 QQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKR 99 (134)
T ss_dssp HHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444433 22 33566555445555666655 456788999888774 311125566677888999999999999
Q ss_pred HHHhC-CCCCCHH
Q 046194 720 FINKM-PITPNSL 731 (934)
Q Consensus 720 ~~~~m-~~~p~~~ 731 (934)
+.+.+ .++|+..
T Consensus 100 y~d~lL~~eP~N~ 112 (134)
T 3o48_A 100 YVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHTTCTTCH
T ss_pred HHHHHHhhCCCCH
Confidence 99987 7777643
No 260
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=71.04 E-value=67 Score=34.29 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCCCccc--hhHHHHHHHhcCChHHHHHHHHH
Q 046194 218 ILAMVKKAGLLSDLYV--GSALVSGFARLGNFYYARKIFEQ 256 (934)
Q Consensus 218 i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~ 256 (934)
+.+.+.+.|..++... ..+.+...++.|+.+-+..+++.
T Consensus 95 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 95 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 4444555565554332 22344555666777666666554
No 261
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=70.96 E-value=70 Score=31.78 Aligned_cols=159 Identities=10% Similarity=0.007 Sum_probs=75.3
Q ss_pred HHHHhcCCCCchhhhHHHHHHhhcCChhhHHHhhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcc--
Q 046194 10 QILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRY-- 87 (934)
Q Consensus 10 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-- 87 (934)
.+.+.++........+.+...++.|+.+-+..+++.-..++...-.+.+...++.|+.+ +.+.+.+.|..++..
T Consensus 18 lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~d~ 93 (285)
T 3kea_A 18 FLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTK----IVKILLFSGLDDSQFDD 93 (285)
T ss_dssp HHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCH----HHHHHHHTTCCTTCCCT
T ss_pred HHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCC
Confidence 33333433322334455666667777777777766543332221122233344555554 334445566655432
Q ss_pred -cHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCch---hhHHHHHHhhhCCCChHHHHHHhhccCCC-CcccHHHHH
Q 046194 88 -ALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGL---VSNVLIAMYGSCLESTDCARRIFEEIETR-DLISWNSII 162 (934)
Q Consensus 88 -~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~li~~y~~~~g~~~~a~~~f~~~~~~-~~~~~~~li 162 (934)
-.+.|..++.. +..+ +...+++.|..++.. -+.+.+...+.. |+.+.++.+++.-... +...-.+.+
T Consensus 94 ~g~t~L~~A~~~---g~~~----~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~g~t~L 165 (285)
T 3kea_A 94 KGNTALYYAVDS---GNMQ----TVKLFVKKNWRLMFYGKTGWKTSFYHAVML-NDVSIVSYFLSEIPSTFDLAILLSCI 165 (285)
T ss_dssp TSCCHHHHHHHT---TCHH----HHHHHHHHCGGGGGCSSSGGGSHHHHHHHT-TCHHHHHHHHTTSCTTCCCSTHHHHH
T ss_pred CCCcHHHHHHHc---CCHH----HHHHHHhcCCCCCccCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCccccccCCccHH
Confidence 23344444432 3333 344445555443322 113444445555 7777777777665433 221223334
Q ss_pred HHHHcCCCchHHHHHHHH
Q 046194 163 SVYSQRGDTISVFKLFSR 180 (934)
Q Consensus 163 ~~~~~~g~~~~A~~l~~~ 180 (934)
...++.|+.+-+.-+++.
T Consensus 166 ~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 166 HITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHc
Confidence 444566666544444443
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=69.42 E-value=33 Score=27.76 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=39.5
Q ss_pred hCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 723 KMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 723 ~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
.+.+-|++.+..+-|.||++- +|+..|.+.++-+...-.+...+|--+
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRv--ND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRL--NDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 346889999999999999999 999999999998877765555556555
No 263
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.92 E-value=38 Score=33.38 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=15.8
Q ss_pred HHHHHHhhhCCCChHHHHHHhhccCCC
Q 046194 127 NVLIAMYGSCLESTDCARRIFEEIETR 153 (934)
Q Consensus 127 ~~li~~y~~~~g~~~~a~~~f~~~~~~ 153 (934)
++.+...++. |+++..+.+++.-...
T Consensus 6 ~~~L~~A~~~-g~~~~v~~Ll~~g~~~ 31 (285)
T 1wdy_A 6 NHLLIKAVQN-EDVDLVQQLLEGGANV 31 (285)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHTTCCT
T ss_pred chHHHHHHHc-CCHHHHHHHHHcCCCc
Confidence 4455555666 7777777777655443
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.10 E-value=18 Score=29.01 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=49.4
Q ss_pred hhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHH
Q 046194 133 YGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLI 201 (934)
Q Consensus 133 y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll 201 (934)
.... |+++.|..+.+....||++.|-++-.+ +.|-.+++...+.+|-.+| .|....|..=+
T Consensus 49 LmNr-G~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-----~p~~q~Fa~g~ 109 (115)
T 2uwj_G 49 LANQ-GRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS-----DPALADFAAGM 109 (115)
T ss_dssp HHHT-TCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS-----SHHHHHHHHHH
T ss_pred HHcc-hhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-----CHHHHHHHHHH
Confidence 3344 999999999999999999999888764 6788888888888998888 57666665443
No 265
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=66.84 E-value=20 Score=41.42 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=36.9
Q ss_pred HHHHHhcCCHHHHHHHHHhhcc-CC-CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 046194 501 LSCYGKCGEMDDCEKIFARMSE-RR-DEVSWNSMISGYIHNELLPKAMNLVWFM 552 (934)
Q Consensus 501 i~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m 552 (934)
.+.+...|+++-|.++-++... .| +-.+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445567778888777776655 24 4567888888888888888888777665
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.59 E-value=88 Score=29.15 Aligned_cols=91 Identities=8% Similarity=0.010 Sum_probs=40.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH 674 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 674 (934)
+..+-...+.++.+.|+.+....+.+.+..+|...-...+.++...|.. +++..+.++.+ .||...-...+.++..
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGE 169 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 4444444455555555443333333334444544444455555555543 23333433332 3444444444455555
Q ss_pred hCcHHHHHHHHHHhHH
Q 046194 675 AGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 675 ~g~~~~a~~~~~~m~~ 690 (934)
.+. +++...+..+.+
T Consensus 170 ~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 170 IGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HCS-HHHHHHHHHHHH
T ss_pred hCc-hhHHHHHHHHHh
Confidence 444 334444444433
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=65.03 E-value=19 Score=28.94 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=48.5
Q ss_pred hhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHH
Q 046194 133 YGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLI 201 (934)
Q Consensus 133 y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll 201 (934)
.... |+++.|..+.+....||++.|-++-.+ +.|-.+++...+.+|-.+| .|....|..=+
T Consensus 50 LmNr-G~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-----~p~~q~Fa~g~ 110 (116)
T 2p58_C 50 LMNR-GDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-----DPRIQTFVNGM 110 (116)
T ss_dssp HHHT-TCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-----CHHHHHHHHHH
T ss_pred HHcc-hhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-----CHHHHHHHHHH
Confidence 3344 999999999999999999999988765 5677788888888888888 57666665443
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.02 E-value=61 Score=34.10 Aligned_cols=129 Identities=9% Similarity=-0.048 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhchhhHHHHHHHHHHHHHh-CCCC---cHhHHHHHHHHHHhcCC-HHHHHHHhccCCC---CCcccc---
Q 046194 562 FTFATVLSACASVATLERGMEVHACGVRA-CLEF---DVVIGSALVDMYSKCGR-IDYASRFFDLMPV---RNVYSW--- 630 (934)
Q Consensus 562 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~---~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~--- 630 (934)
.....+...+.+.|+.++..+++...... +.-| .......|++.+....+ .+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666655555543321 1111 23334455665555332 2222222222211 111222
Q ss_pred ---cHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-----HHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 631 ---NSMISGYARHGHGDKALTLFSQMKLDGPLPDHVT-----FVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 631 ---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-----~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
.-++..|...|++.+|++++.++.+.=-+.|..+ +..-+..|...+++.++...+.....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 1355566666666666666666655311222222 22333345556666666666655543
No 269
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=64.95 E-value=13 Score=39.35 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=54.1
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh-----CCCcCCC
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE-----AEVKKEA 801 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 801 (934)
...++.++... |+.+.+...++.+...+|-+-..|..|..+|.+.|+..+|.+.++...+ -|+.|.+
T Consensus 174 ~~~~~~~~l~~--g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIAC--GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34455666677 8999999999999999999989999999999999999999988887653 3665554
No 270
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.51 E-value=44 Score=41.33 Aligned_cols=161 Identities=7% Similarity=-0.042 Sum_probs=87.2
Q ss_pred HHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchH
Q 046194 295 NGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIM 374 (934)
Q Consensus 295 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 374 (934)
..++..+.+.+..+-|.++....+. +..+--.+...|...|++++|.+.|.+.-. |+..+..... ...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~----------~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA----------VLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCS----------SHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhh----------hhc
Confidence 3456666777888888777665544 433334556678889999999999976532 2322221110 000
Q ss_pred HHHHHHHHHhhh-C-CCCchhHHHHHHHHHHhcCChHHHHHHHh----hCCCCCc----cchHHHHHHHHhCCccHHHHH
Q 046194 375 LGQQIHGEGLKL-G-LDSDVSVSNALLSLYADAGYLSRCLKVFF----LMPEHDQ----VSWNSVIGAFADSEALVSEAV 444 (934)
Q Consensus 375 ~a~~i~~~~~~~-g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~~~~~~~----~~~~~li~~~~~~g~~~~~A~ 444 (934)
. ...+... . ...-..-|..++..+-+.+.++.+.++-. .....+. ..|..+..++.+.|++ ++|.
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y-e~Ay 958 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF-DAAH 958 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS-GGGG
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH-HHHH
Confidence 0 0000100 0 01112345666667777777666554432 2222221 2577888888888888 8888
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhccCC
Q 046194 445 KYYLDMRRAGWSPNGVTFINILAAASSFSM 474 (934)
Q Consensus 445 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 474 (934)
..+-.+.....+ ...+..++..++..+.
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCC
Confidence 888777654332 2234444444444443
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.28 E-value=46 Score=32.63 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=67.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc----ccHHHHHHHHhh
Q 046194 636 GYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL----EQFSCMVDLLGR 710 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~y~~li~~l~~ 710 (934)
...+.|..++|++....-++. .|. ...-..++.-++-.|+++.|.+-++...+ +.|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 345667777787777777665 344 44455566677778888888877777655 34542 233333322
Q ss_pred cCChHHHH-HHHHhC--C--CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 711 AGELDKIE-EFINKM--P--ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 711 ~g~~~~A~-~~~~~m--~--~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
+.+. ++|..- | +.....-...|+.+......|+.+.|...-..+++.-|..++.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 1121 122211 1 1112222344555555443378888888888887777766553
No 272
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=63.66 E-value=92 Score=33.18 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=15.4
Q ss_pred hHHHHHHhhcCChhhHHHhhccCCCC
Q 046194 24 NTLINVYVRVGDLASASKLFDEMPDR 49 (934)
Q Consensus 24 ~~li~~~~~~g~~~~A~~~f~~~~~~ 49 (934)
.+.+..-++.|+++-...+++.-..+
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~ 40 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASP 40 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence 34455556667777766666654433
No 273
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.49 E-value=74 Score=39.24 Aligned_cols=60 Identities=5% Similarity=-0.088 Sum_probs=31.2
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV-----NYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|..++..+..+ +..+.+.+.++.+++..+++.. .|..+-+.+...|++++|...+..+..
T Consensus 902 Y~hv~~LFe~~--~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 902 YLHLSKKLFEE--SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHT--SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 44444555555 5566666666655554433222 244444555555666666555544443
No 274
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=62.79 E-value=45 Score=29.98 Aligned_cols=121 Identities=15% Similarity=0.084 Sum_probs=69.2
Q ss_pred CCCCCCh--hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc-------ccHHHHHHHHhhcCChHHHHHHHHhC--
Q 046194 656 DGPLPDH--VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL-------EQFSCMVDLLGRAGELDKIEEFINKM-- 724 (934)
Q Consensus 656 ~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~y~~li~~l~~~g~~~~A~~~~~~m-- 724 (934)
.|+.|.. .++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4666653 345555667888899999988877766543344442 35677888899999999999888874
Q ss_pred -----CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 725 -----PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 725 -----~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
.-.|+.. .++ . .. .... .-..+ +.+...-..++..|.+.|++++|..+++.+
T Consensus 92 ~~k~l~k~~s~~--~~~-~---~~--ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVR--PST-G---NS--ASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC-----------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcc--ccc-c---cc--CCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1112111 011 0 00 0000 00111 334456677999999999999999986654
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.92 E-value=64 Score=33.37 Aligned_cols=73 Identities=10% Similarity=0.104 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCC--CcchHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSERR--DEVSWNSMISGYIHNEL--LPKAMNLVWFMMQRGQRLDHFTFATVLSA 570 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 570 (934)
+.++.=|...|+.++|.+.++++.... ..+...++..++-+.++ .+...+++..+...|+-+.......+.+.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 678888999999999999999997531 12234444455544333 45678888888887766655444444333
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=60.38 E-value=52 Score=32.75 Aligned_cols=12 Identities=8% Similarity=-0.069 Sum_probs=5.0
Q ss_pred HHHHHCCCCCCh
Q 046194 346 CAMRRDGLMSSN 357 (934)
Q Consensus 346 ~~m~~~g~~p~~ 357 (934)
+.+.+.|..|+.
T Consensus 212 ~~Ll~~gad~~~ 223 (285)
T 3kea_A 212 QALFKYDINIYS 223 (285)
T ss_dssp HHHTTSCBCSTT
T ss_pred HHHHHcCCCCCC
Confidence 333444444443
No 277
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=59.05 E-value=34 Score=29.34 Aligned_cols=60 Identities=10% Similarity=0.146 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHH
Q 046194 645 KALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVD 706 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 706 (934)
+..+-++.+....+-|+.......|.+|.+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34444555666678899999999999999999999999999999875 4455666777764
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.66 E-value=61 Score=34.74 Aligned_cols=96 Identities=7% Similarity=-0.041 Sum_probs=58.1
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHH----
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPD--HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFS---- 702 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~---- 702 (934)
++..+..-|.+.|+.++|.+.|.++.+.-..+. ...+..++..+...+++..+...+.++.....-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455666777777777777777777776533333 23456667777777888888877777765433333322211
Q ss_pred HHHHHHhhcCChHHHHHHHHhC
Q 046194 703 CMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m 724 (934)
+-+-.+...+++.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2222344567787777766554
No 279
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=55.07 E-value=73 Score=27.39 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=42.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 717 IEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 717 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
++.-+-.+.+-|++.+..+-|.+|++- +|+..|.+.++-+...-.+...+|--+
T Consensus 75 glN~l~~~DlVPeP~Ii~AALrAcRRv--NDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 75 GMNTLVGYDLVPEPKIIDAALRACRRL--NDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 333334457889999999999999999 999999999998877765545666555
No 280
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=50.30 E-value=2.5e+02 Score=31.81 Aligned_cols=80 Identities=14% Similarity=0.028 Sum_probs=41.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHh---
Q 046194 328 MISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYAD--- 404 (934)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~--- 404 (934)
....+.-.|+++.|++++-.. ...|.+.+...|..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 445566789999999887754 34555666666655443332 11111110 00 11 2236677777765
Q ss_pred cCChHHHHHHHhhC
Q 046194 405 AGYLSRCLKVFFLM 418 (934)
Q Consensus 405 ~g~~~~A~~~f~~~ 418 (934)
..+...|...|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 46777787776655
No 281
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=48.00 E-value=27 Score=34.25 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=41.0
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 706 DLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
..+.+.|.+++|++.+..- .-.| |...-..|..-++.. |+++.|..-.+...+++|+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~--G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCID--GDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCchhh
Confidence 3456778888887766554 4444 455556677777777 888888888888888887753
No 282
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=47.55 E-value=1.3e+02 Score=30.41 Aligned_cols=56 Identities=7% Similarity=0.108 Sum_probs=42.5
Q ss_pred CCCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 046194 725 PITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 725 ~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 796 (934)
++.|. ..++.+-+..+.++ +|+..|...+++++++.|... ..++|.++...-.+++
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~--KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKH--KNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 66664 34678888888999 999999999999999998532 2566777766666543
No 283
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.92 E-value=53 Score=31.94 Aligned_cols=89 Identities=16% Similarity=0.082 Sum_probs=49.9
Q ss_pred HHHHHcCCCchHHHHHHHHHHHccCCCCCCCCce-------eHHHHHHHHh--cCccccchHHHHHHHHHHHhC------
Q 046194 162 ISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEY-------TFGSLITAAY--SSVLSGSYLLQQILAMVKKAG------ 226 (934)
Q Consensus 162 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~-------t~~~ll~a~~--~~~~~~~~~a~~i~~~~~~~g------ 226 (934)
+...++.|+.+....+++.+...|. .++.. -.+.|..|+. +.|..+. ++.+++.-...+
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~----~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~--v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKK----RLTDEEFREPSTGKTCLPKALLNLSAGRNDT--IPILLDIAEKTGNMREFI 82 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTC----CTTSGGGSCTTTCCCHHHHHHTSCBTTBCTH--HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCC----CcchhhhhccCCCCcHHHHHHHHhhcCCHHH--HHHHHHhcccccchHhhh
Confidence 3445678899988888888888776 55533 3344444442 4566554 666655543321
Q ss_pred -CCCCc--cchhHHHHHHHhcCChHHHHHHHHH
Q 046194 227 -LLSDL--YVGSALVSGFARLGNFYYARKIFEQ 256 (934)
Q Consensus 227 -~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~ 256 (934)
...+. ....+.+...+..|+.+-+.-+++.
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 11111 1233445555667877766666654
No 284
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.89 E-value=26 Score=35.47 Aligned_cols=197 Identities=12% Similarity=0.134 Sum_probs=98.8
Q ss_pred hhHHHHHHhhcCChhhHHHhhccCCCCChhhH--HHHHH-HHhcCCChh-hHHHHHHHHHHcCCCCCcc---cHHHHHHH
Q 046194 23 CNTLINVYVRVGDLASASKLFDEMPDRNSVSW--ACIVS-GYTHKGMSN-EACKMFKEMVRAGFLLNRY---ALGSVLRA 95 (934)
Q Consensus 23 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~--~~li~-~~~~~~~~~-~a~~~~~~m~~~g~~~~~~---~~~~ll~~ 95 (934)
...+|.-|...|+.++|...++++..|.-... ..+|. ++-+...-. .+-.++..+.. ++-+... .|..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 45688999999999999999999987752211 22233 343433222 34446677653 4333332 25555655
Q ss_pred hhhcCCCChhhhhHHHH----HHHHhcCCCCchhhHHHHHHhhhCCC--ChHHHHHHhhccCC-----------CC----
Q 046194 96 CQECGPSGFKFGMQVHC----LVLKSNQTFDGLVSNVLIAMYGSCLE--STDCARRIFEEIET-----------RD---- 154 (934)
Q Consensus 96 ~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~li~~y~~~~g--~~~~a~~~f~~~~~-----------~~---- 154 (934)
+.... -|...+....+ +++..+.-|-.++....-..-... | -+..|..++. +++ ++
T Consensus 85 ldDl~-lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~-g~~~l~~a~~~l~-~~~~~~~~~~~WG~~~~~~~ 161 (307)
T 2zu6_B 85 LPELA-LDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQ-ARAALDKATVLLS-MSKGGKRKDSVWGSGGGQQS 161 (307)
T ss_dssp HHHHH-HHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHH-HHHHHHHHHHHHH-TCC----CCCSSCCCSTTSC
T ss_pred hhHhc-ccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchH-HHHHHHHHHHHhc-ccccHhHHhhhcCCCCCCCC
Confidence 54331 13444444443 344445444433332221100000 0 1233333331 111 11
Q ss_pred cc----cHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCC
Q 046194 155 LI----SWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLL 228 (934)
Q Consensus 155 ~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~ 228 (934)
.. ..+.+|.-|...|+.++|...++++..... . ..+....+..+.-+.++...+.+..++..+.+.|+-
T Consensus 162 ~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f----~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 162 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHF----H-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGG----H-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcc----h-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 11 267889999999999999999999842211 1 122233333344333333333355555555555543
No 285
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=44.07 E-value=2.6e+02 Score=28.08 Aligned_cols=274 Identities=11% Similarity=0.046 Sum_probs=134.2
Q ss_pred hhHHHHHHhhcCChhhHHHhhccCCCCChh----hHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCccc---HHHHHHH
Q 046194 23 CNTLINVYVRVGDLASASKLFDEMPDRNSV----SWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYA---LGSVLRA 95 (934)
Q Consensus 23 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~ll~~ 95 (934)
-++.+..-++.|+++-...+++.-..+|.. -++.|..+ ++.|+.+ +.+.+.+.|..|+... ...+..+
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A-~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA-VQMSRED----IVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH-HHcCCHH----HHHHHHHcCCchhhhccCCCchhHHH
Confidence 466677778899999988888765554422 24455433 4556654 4555667776665332 1122222
Q ss_pred hhhcCCCChhhhhHHHHHHHHhcCCCCch--hhHHHHHHhhhCCCChHHHHHHhhccCCCCc-------------ccHHH
Q 046194 96 CQECGPSGFKFGMQVHCLVLKSNQTFDGL--VSNVLIAMYGSCLESTDCARRIFEEIETRDL-------------ISWNS 160 (934)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~-------------~~~~~ 160 (934)
+.. +.. .+.......+...+.. ...+.+..-+.. |..+.+..+++.-...+. .-++.
T Consensus 100 ~~~---~~~----~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~-~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~ 171 (337)
T 4g8k_A 100 AIA---GSV----KLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171 (337)
T ss_dssp HHH---TCH----HHHHHHHTTTCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred Hhc---ccc----hhhHHhhhccchhhhhccCCCCHHHHHHHc-CcHHHHHHHHHcCCCcchhhccccccccccCCCCcH
Confidence 211 111 1222333334332211 112233334455 777777777665332211 11333
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCce---eHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccch--h
Q 046194 161 IISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEY---TFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVG--S 235 (934)
Q Consensus 161 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~---t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~--~ 235 (934)
|.. .++.|+.+-+..+++ +.|. .|+.. ..+.+..++...... . ...+.+.+.+.|..++.... .
T Consensus 172 L~~-A~~~g~~~~v~~LL~---~~ga----d~n~~d~~g~t~l~~~~~~~~~~-~--~~~i~~lLl~~gad~n~~d~~g~ 240 (337)
T 4g8k_A 172 LMD-AAEKGHVEVLKILLD---EMGA----DVNACDNMGRNALIHALLSSDDS-D--VEAITHLLLDHGADVNVRGERGK 240 (337)
T ss_dssp HHH-HHHHTCHHHHHHHHH---HSCC----CTTCCCTTSCCHHHHHHHHSCTT-T--HHHHHHHHHHTTCCTTCCCGGGC
T ss_pred HHH-HHHCCCHHHHHHHHh---ccCC----CcCccCCCCCcHHHHHHHHcCcc-c--HHHHHHHHHHCCCCCCCcCCCCC
Confidence 433 355666654433332 2354 33322 223333333322221 1 45667777888887765432 3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhh-h---cccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHH
Q 046194 236 ALVSGFARLGNFYYARKIFEQMI-Q---KNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSR 311 (934)
Q Consensus 236 ~li~~~~~~g~~~~A~~l~~~m~-~---~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 311 (934)
+.+...+..|+.+.+..+++.-. . .|...+ +-+..-++.|..+-+.
T Consensus 241 t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~------------------------------TpL~~A~~~g~~~iv~ 290 (337)
T 4g8k_A 241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK------------------------------TALLLAVELKLKKIAE 290 (337)
T ss_dssp CHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSC------------------------------BHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCC------------------------------CHHHHHHHcCCHHHHH
Confidence 45566778888887776665321 1 111111 1123334556666666
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 046194 312 SVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSN 357 (934)
Q Consensus 312 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 357 (934)
-+++.-..+|..+ . +..-+++|+. ++.+.+++.|-.||.
T Consensus 291 ~Ll~~GAd~n~~~--~-L~~A~~~~~~----~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 291 LLCKRGASTDCGD--L-VMTARRNYDH----SLVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHTTSCSSTTCC--H-HHHHHHTTCH----HHHHHHHHTTCCC--
T ss_pred HHHHCCCCCCCCC--H-HHHHHHcCCH----HHHHHHHHCcCCCCC
Confidence 6665443444333 2 3334556664 355666777877764
No 286
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.90 E-value=84 Score=33.63 Aligned_cols=60 Identities=8% Similarity=0.035 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
+...+..-+.+.|++++|.+.|.++... ...+. ...+-.++.++...+++..|...+++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4556666777778888888777777663 22222 455666677777777777777777665
No 287
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=40.54 E-value=1.1e+02 Score=31.42 Aligned_cols=16 Identities=6% Similarity=-0.085 Sum_probs=8.1
Q ss_pred HHhcCChHHHHHHHhh
Q 046194 402 YADAGYLSRCLKVFFL 417 (934)
Q Consensus 402 y~~~g~~~~A~~~f~~ 417 (934)
.++.|+.+-+..+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 3444555555555544
No 288
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=39.36 E-value=8.1 Score=28.35 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=17.8
Q ss_pred cEEEEecCCcccccCCcccCCC
Q 046194 910 REIVLRDSNRFHHFNDGKCSCG 931 (934)
Q Consensus 910 ~~~~~~d~~~~h~f~~g~csc~ 931 (934)
..|=+.|.+..|+|||||-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 3566889999999999996543
No 289
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=38.91 E-value=10 Score=24.42 Aligned_cols=10 Identities=50% Similarity=1.335 Sum_probs=8.6
Q ss_pred CCcccCCCCC
Q 046194 924 NDGKCSCGDY 933 (934)
Q Consensus 924 ~~g~csc~~~ 933 (934)
.+|.||||-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 6899999976
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.75 E-value=69 Score=31.06 Aligned_cols=44 Identities=11% Similarity=-0.010 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCC---------ccchhHHHHHHHhcCChHHHHHHHHHhhh
Q 046194 216 QQILAMVKKAGLLSD---------LYVGSALVSGFARLGNFYYARKIFEQMIQ 259 (934)
Q Consensus 216 ~~i~~~~~~~g~~~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 259 (934)
.++.+.+.+.|..++ ...-.+-+...++.|+.+-+.-++++-..
T Consensus 198 ~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 456666666665442 12233455666788998888888877654
No 291
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=37.97 E-value=3.7e+02 Score=28.07 Aligned_cols=27 Identities=11% Similarity=-0.009 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC
Q 046194 394 VSNALLSLYADAGYLSRCLKVFFLMPE 420 (934)
Q Consensus 394 ~~~~li~~y~~~g~~~~A~~~f~~~~~ 420 (934)
....|...|.+.|+.++...++.....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888888888888776653
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=37.93 E-value=1.8e+02 Score=26.35 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=26.1
Q ss_pred hccCChhHHHHHHhcC-C---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 046194 302 AKCGTIDDSRSVFRFM-I---GKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSN 357 (934)
Q Consensus 302 ~~~g~~~~A~~~f~~~-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 357 (934)
++.|+.+-+..+++.- . .+|..-++.+..+.........-.++.+.+.+.|..|+.
T Consensus 114 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 3445555555555443 1 123333444444333322233335566666666665553
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.60 E-value=1.5e+02 Score=27.82 Aligned_cols=205 Identities=9% Similarity=0.025 Sum_probs=96.6
Q ss_pred HHHHhhcCChhhHHHhhccCCCC---ChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcc----cHHHHHHHhhhc
Q 046194 27 INVYVRVGDLASASKLFDEMPDR---NSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRY----ALGSVLRACQEC 99 (934)
Q Consensus 27 i~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~ 99 (934)
+...++.|+++-...+++.-..+ +..-++. +...++.|+.+ +++.+.+.|..++.. ..+.+..++..
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~- 86 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTL-LHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQ- 86 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHH-
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCH-HHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHc-
Confidence 33456678877777777654332 2222233 33445556554 445555666544432 22334444432
Q ss_pred CCCChhhhhHHHHHHHHhcCCCCch--hhHHHHHHhhhCCCChHHHHHHhhccCCC---CcccHHHHHHHHHcCCCchHH
Q 046194 100 GPSGFKFGMQVHCLVLKSNQTFDGL--VSNVLIAMYGSCLESTDCARRIFEEIETR---DLISWNSIISVYSQRGDTISV 174 (934)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~li~~y~~~~g~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A 174 (934)
+..+ +...+++.|..++.. ...+.+...++. |+.+.++.+++.-..+ +...++.+..+..+.+ ..+.
T Consensus 87 --~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~ 158 (240)
T 3eu9_A 87 --GHLS----MVVQLMKYGADPSLIDGEGCSCIHLAAQF-GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH-SVDP 158 (240)
T ss_dssp --TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC-SSTT
T ss_pred --CCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc-CHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC-hHHH
Confidence 3333 444555666554432 222334444555 7777777776654332 3333444444443333 2333
Q ss_pred HHHHHHHHHccCCCCCCCCceeH---HHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccch--hHHHHHHHhcCChHH
Q 046194 175 FKLFSRMQREGFRYSLKPNEYTF---GSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVG--SALVSGFARLGNFYY 249 (934)
Q Consensus 175 ~~l~~~m~~~g~~~~~~p~~~t~---~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~ 249 (934)
.+++ .+.|. .++...- .+.|..++..+.. ++.+.+.+.|..++.... .+.+....+.|+.+-
T Consensus 159 ~~~L---~~~~~----~~~~~~~~~g~t~L~~A~~~~~~------~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 225 (240)
T 3eu9_A 159 TRLL---LTFNV----SVNLGDKYHKNTALHWAVLAGNT------TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWM 225 (240)
T ss_dssp HHHH---HHTTC----CTTCCCTTTCCCHHHHHHHHTCH------HHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHHH---HhcCC----CcchhhccCCCcHHHHHHHcCCH------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 3333 33443 3332211 1223333333332 344555566766654432 245555667777766
Q ss_pred HHHHHHHhh
Q 046194 250 ARKIFEQMI 258 (934)
Q Consensus 250 A~~l~~~m~ 258 (934)
+.-+++...
T Consensus 226 v~~L~~~~~ 234 (240)
T 3eu9_A 226 INHLQEARQ 234 (240)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhh
Confidence 666665543
No 294
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.84 E-value=2.4e+02 Score=25.50 Aligned_cols=149 Identities=9% Similarity=-0.049 Sum_probs=65.9
Q ss_pred HhhccCChhHHHHHHhcCC-C---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh---HHHHHHHhhccCc
Q 046194 300 MYAKCGTIDDSRSVFRFMI-G---KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFS---LISTLSSCASLGW 372 (934)
Q Consensus 300 ~~~~~g~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~~~ 372 (934)
..+..|+.+....++..-. . +|...++.|.. .++.|+. ++++.+.+.|..|+... .+. +...+..|+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 84 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDI----EIAKALIDRGADINLQNSISDSP-YLYAGAQGR 84 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCC
Confidence 4456788888888887554 2 23333444443 3445553 45555556666554322 222 233334455
Q ss_pred hHHHHHHHHHHhhhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhhC-CC---CCccchHHHHHHHHhCCccHHHHHHH
Q 046194 373 IMLGQQIHGEGLKLGLDSDVS--VSNALLSLYADAGYLSRCLKVFFLM-PE---HDQVSWNSVIGAFADSEALVSEAVKY 446 (934)
Q Consensus 373 ~~~a~~i~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~-~~---~~~~~~~~li~~~~~~g~~~~~A~~l 446 (934)
.+..+.+++. .+..++.. .....+...++.|+.+-+..+++.- .. +|..-++.+..+....... ..-.++
T Consensus 85 ~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~-~~~~~~ 160 (201)
T 3hra_A 85 TEILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN-QLYQDI 160 (201)
T ss_dssp HHHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCS-HHHHHH
T ss_pred HHHHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccch-hhHHHH
Confidence 5544444322 11111110 0111223344555665555555443 11 2333344444333322222 333445
Q ss_pred HHHHHHcCCCCC
Q 046194 447 YLDMRRAGWSPN 458 (934)
Q Consensus 447 ~~~m~~~g~~p~ 458 (934)
++.+.+.|..++
T Consensus 161 v~~Ll~~ga~~~ 172 (201)
T 3hra_A 161 VKLLMENGADQS 172 (201)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHCCCCCC
Confidence 555555554444
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.63 E-value=1.8e+02 Score=27.99 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=55.8
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHc--cCCCCCCC----CceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccch
Q 046194 161 IISVYSQRGDTISVFKLFSRMQRE--GFRYSLKP----NEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVG 234 (934)
Q Consensus 161 li~~~~~~g~~~~A~~l~~~m~~~--g~~~~~~p----~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 234 (934)
-+..+....++++|.+++++.... +. ++ +.......++.-...... .++..+.+.+. . .++....
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~----~~~~~~~~~~~~~~l~~ki~eR~~--~L~~~L~~~l~-~--~~~~~~~ 94 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDL----SERISDEELMLLNLISLKIEQRRE--AISSKLSQSIL-S--SNEIVHL 94 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT----C-------CHHHHHHHHHHHHHHH--HHHHHHHHHHH-T--CSSHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhC----cccccccchHHHHHHHHHHHHHHH--HHHHHHHHHHH-h--cCCHHHH
Confidence 466778889999999999887652 32 22 112223333332222211 12555555552 2 5666677
Q ss_pred hHHHHHHHhcCChHHHHHHHHHhh
Q 046194 235 SALVSGFARLGNFYYARKIFEQMI 258 (934)
Q Consensus 235 ~~li~~~~~~g~~~~A~~l~~~m~ 258 (934)
...+..+.+-|+.++|..+|=+..
T Consensus 95 r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 95 KSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChhHHHHHHHHHH
Confidence 788899999999999999997764
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.56 E-value=2.9e+02 Score=25.80 Aligned_cols=51 Identities=10% Similarity=0.015 Sum_probs=28.4
Q ss_pred HHhcCccccchHHHHHHHHHHHhCCCCCccc--hhHHHHHHHhcCChHHHHHHHH
Q 046194 203 AAYSSVLSGSYLLQQILAMVKKAGLLSDLYV--GSALVSGFARLGNFYYARKIFE 255 (934)
Q Consensus 203 a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~l~~ 255 (934)
.++..|+.+. ++.+++...+.|..++... ..+.+...+..|+.+-+..+++
T Consensus 15 ~A~~~g~~~~--v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 15 IAVVQGNLPA--VHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHTTCHHH--HHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHH--HHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 3344555554 6666666666666555432 2344555566677665555544
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.63 E-value=1.8e+02 Score=27.16 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=6.0
Q ss_pred CChHHHHHHhhc
Q 046194 138 ESTDCARRIFEE 149 (934)
Q Consensus 138 g~~~~a~~~f~~ 149 (934)
|+++..+.+++.
T Consensus 20 g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 20 GIYERCRELVEA 31 (240)
T ss_dssp TCHHHHHHHHHT
T ss_pred CChHHHHHHHHc
Confidence 555555555443
No 298
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.53 E-value=2.9e+02 Score=25.12 Aligned_cols=142 Identities=13% Similarity=0.030 Sum_probs=62.5
Q ss_pred CCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 046194 288 FDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSC 367 (934)
Q Consensus 288 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 367 (934)
.+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|.. +++..+..+.. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 344455555555556666544445555555555554444455555555543 33333333333 24444444555555
Q ss_pred hccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCC
Q 046194 368 ASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSE 437 (934)
Q Consensus 368 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 437 (934)
...++.+....+...+ -.++..+-...+.+..+.++.+....+...+..++...-...+.++.+.|
T Consensus 101 ~~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 101 GQIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHhCcHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 5544433222222221 13444444444555555544333333333333333333333333333333
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.52 E-value=1.6e+02 Score=25.16 Aligned_cols=100 Identities=9% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHhhccCChhHHHHHHhcCCCC---CcccHHHHHHHHHhCCCh--hHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 046194 295 NGLVNMYAKCGTIDDSRSVFRFMIGK---DSVSWNTMISGLDQNGCY--EEAIMNFCAMRRDGLMSSNFSLISTLSSCAS 369 (934)
Q Consensus 295 ~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 369 (934)
+.++.-|...|+.++|.+.++++..| ..+....+..++-+.+.. +....++..+...|+-+.......+-..+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~ 90 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNE 90 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhh
Q ss_pred cCc--------hHHHHHHHHHHhhhCCCCchhH
Q 046194 370 LGW--------IMLGQQIHGEGLKLGLDSDVSV 394 (934)
Q Consensus 370 ~~~--------~~~a~~i~~~~~~~g~~~~~~~ 394 (934)
..+ .+...++...++..|+-+....
T Consensus 91 l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~ 123 (129)
T 2nsz_A 91 IPDINLDVPHSYSVLERFVEECFQAGIISKQLR 123 (129)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred ChHhhcCccchHHHHHHHHHHHHHCCCCCHHHH
No 300
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.15 E-value=2.9e+02 Score=25.08 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=11.0
Q ss_pred ChhhHHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 661 DHVTFVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 661 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
+...-...+.++...|. +++...+..+.
T Consensus 151 ~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 33333334444444443 23333334443
No 301
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.15 E-value=3.3e+02 Score=25.38 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCCCccc--hhHHHHHHHhcCChHHHHHHHH
Q 046194 217 QILAMVKKAGLLSDLYV--GSALVSGFARLGNFYYARKIFE 255 (934)
Q Consensus 217 ~i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~l~~ 255 (934)
++.+.+.+.|..++... ..+.+...+..|+.+-+.-+++
T Consensus 25 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 65 (237)
T 3b7b_A 25 DICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65 (237)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh
Confidence 34555566666555432 2234455556677665555554
No 302
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.58 E-value=3e+02 Score=25.67 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=13.2
Q ss_pred HhcCCChhhHHHHHHHHHHcCCCCC
Q 046194 61 YTHKGMSNEACKMFKEMVRAGFLLN 85 (934)
Q Consensus 61 ~~~~~~~~~a~~~~~~m~~~g~~~~ 85 (934)
.++.|+.+-...+++.+...|..++
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3445666555555555555555444
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.70 E-value=2.6e+02 Score=26.80 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=15.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhcc
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDL 621 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~ 621 (934)
+.......+..+.+.|+-++|.++|-+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 344444455666666766666666643
No 304
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.53 E-value=1.9e+02 Score=27.18 Aligned_cols=12 Identities=0% Similarity=0.241 Sum_probs=5.9
Q ss_pred CChHHHHHHhhc
Q 046194 138 ESTDCARRIFEE 149 (934)
Q Consensus 138 g~~~~a~~~f~~ 149 (934)
|+.+.++.+++.
T Consensus 55 ~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 55 NHLEAVKYLIKA 66 (237)
T ss_dssp TCHHHHHHHHTT
T ss_pred CCHHHHHHHHhC
Confidence 555555544443
No 305
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.28 E-value=1.8e+02 Score=27.77 Aligned_cols=121 Identities=11% Similarity=0.013 Sum_probs=60.4
Q ss_pred HHHHHhhhCCCChHHHHHHhhccCCCCcc----------------cHHHHHHHHHcCCCchHHHHHHHHHHH---ccCCC
Q 046194 128 VLIAMYGSCLESTDCARRIFEEIETRDLI----------------SWNSIISVYSQRGDTISVFKLFSRMQR---EGFRY 188 (934)
Q Consensus 128 ~li~~y~~~~g~~~~a~~~f~~~~~~~~~----------------~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~~ 188 (934)
+.+...+.. |+.+.++.+++.-...+.. -++.|.. .++.|+.+ +.+.+.+ .|.
T Consensus 92 t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~-A~~~~~~~----~v~~Ll~~~~~ga-- 163 (256)
T 2etb_A 92 SALHIAIEK-RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSL-AACTKQWD----VVTYLLENPHQPA-- 163 (256)
T ss_dssp CHHHHHHHT-TCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHH-HHHTTCHH----HHHHHHHCSSCCC--
T ss_pred CHHHHHHHc-CCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHH-HHHcCCHH----HHHHHHhccccCC--
Confidence 334444555 7777777777664433222 3444444 34566654 3444445 554
Q ss_pred CCCCCc---eeHHHHHHHHhc-Ccccc-chHHHHHHHHHHHhCCCC-------Ccc--chhHHHHHHHhcCChHHHHHHH
Q 046194 189 SLKPNE---YTFGSLITAAYS-SVLSG-SYLLQQILAMVKKAGLLS-------DLY--VGSALVSGFARLGNFYYARKIF 254 (934)
Q Consensus 189 ~~~p~~---~t~~~ll~a~~~-~~~~~-~~~a~~i~~~~~~~g~~~-------~~~--~~~~li~~~~~~g~~~~A~~l~ 254 (934)
.++. .-.+.+.-|+.. .+..+ .....++.+.+.+.|..+ +.. .-.+-+...++.|+.+-+.-++
T Consensus 164 --~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 164 --SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp --CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred --CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 3432 233344444431 23222 001223566666666554 221 1234556667788888877777
Q ss_pred HHhh
Q 046194 255 EQMI 258 (934)
Q Consensus 255 ~~m~ 258 (934)
+.-.
T Consensus 242 ~~g~ 245 (256)
T 2etb_A 242 QREF 245 (256)
T ss_dssp HHHH
T ss_pred hCCC
Confidence 7643
No 306
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=27.79 E-value=3.7e+02 Score=24.93 Aligned_cols=86 Identities=9% Similarity=0.180 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhc--CCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeC
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEM--EPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMK 809 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 809 (934)
+|-.++..| .. ++......+++-+... .-.-+..|...+..|...|++.+|.++++.=.+++.+|
T Consensus 82 lWl~Ya~~~-~~--~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P---------- 148 (202)
T 3esl_A 82 IWIWYINLF-LS--NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP---------- 148 (202)
T ss_dssp HHHHHHHHH-ST--TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS----------
T ss_pred HHHHHHHhh-cc--cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----------
Confidence 455555554 12 4456777777766554 45567789999999999999999999998877665443
Q ss_pred CEEEEEEcCCCCCCChHHHHHHHHHHHHHHHHCCcc
Q 046194 810 DGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYV 845 (934)
Q Consensus 810 ~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 845 (934)
.+.+.....+....|.+.+++
T Consensus 149 ---------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 149 ---------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred ---------------HHHHHHHHHHHHHHHHhcCCC
Confidence 245566667777888888763
No 307
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.35 E-value=5e+02 Score=26.27 Aligned_cols=41 Identities=5% Similarity=0.034 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCCCCccc--hhHHHHHHHhcCChHHHHHHHHHh
Q 046194 217 QILAMVKKAGLLSDLYV--GSALVSGFARLGNFYYARKIFEQM 257 (934)
Q Consensus 217 ~i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m 257 (934)
++.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-
T Consensus 154 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 154 EMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 44555556676665543 234445556677777666666653
No 308
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.22 E-value=1.5e+02 Score=29.84 Aligned_cols=66 Identities=6% Similarity=0.038 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchh--hHHHHHHHHHHHHHhCCCCc
Q 046194 529 WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVA--TLERGMEVHACGVRACLEFD 595 (934)
Q Consensus 529 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~~~~~~ 595 (934)
.+.++.=|...|+.++|.+.++++......+ .+....+..+.-+.+ ..+...+++..+.+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 3456667777788888877777764211111 223333333444321 23445555555555554443
No 309
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.66 E-value=3.8e+02 Score=24.86 Aligned_cols=149 Identities=9% Similarity=0.039 Sum_probs=84.8
Q ss_pred hHHHHHHhhcCChhhHHHhhccC-C---CCChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCC--------CcccHHH
Q 046194 24 NTLINVYVRVGDLASASKLFDEM-P---DRNSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLL--------NRYALGS 91 (934)
Q Consensus 24 ~~li~~~~~~g~~~~A~~~f~~~-~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--------~~~~~~~ 91 (934)
.+.+..-++.|+.+-...+++.- . .+|..-++.|..+ +..|+.+-+ +.+.+.|..+ |..-.+.
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A-~~~g~~~~v----~~Ll~~~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA-ALYDNLEAA----MVLMEAAPELVFEPMTSELYEGQTA 78 (232)
T ss_dssp TCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHH-HHTTCHHHH----HHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH-HHcCCHHHH----HHHHHcCchhccccccccCCCCcCH
Confidence 34455666778888888887752 2 2344445554433 445665433 3344444332 2233444
Q ss_pred HHHHhhhcCCCChhhhhHHHHHHHHhcCCCCch---------------hhHHHHHHhhhCCCChHHHHHHhhccCCC---
Q 046194 92 VLRACQECGPSGFKFGMQVHCLVLKSNQTFDGL---------------VSNVLIAMYGSCLESTDCARRIFEEIETR--- 153 (934)
Q Consensus 92 ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------------~~~~li~~y~~~~g~~~~a~~~f~~~~~~--- 153 (934)
|..++.. +.. ++...+++.|..++.. -..+.+...++. |+.+.++.+++.-..+
T Consensus 79 L~~A~~~---~~~----~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~ 150 (232)
T 2rfa_A 79 LHIAVIN---QNV----NLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV-GSEEIVRLLIEHGADIRAQ 150 (232)
T ss_dssp HHHHHHT---TCH----HHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHH-TCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHc---CCH----HHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC
Confidence 5555533 443 3555666677655442 234455555666 8888888888764443
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHHccC
Q 046194 154 DLISWNSIISVYSQRGDTISVFKLFSRMQREGF 186 (934)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 186 (934)
|..-++. +...+..|+.+-+..+++.+.+.|.
T Consensus 151 d~~g~t~-L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 151 DSLGNTV-LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp CTTSCCH-HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCH-HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3333444 4445677888888788888888775
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=25.37 E-value=3.5e+02 Score=23.80 Aligned_cols=49 Identities=8% Similarity=0.116 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcC--CCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcC
Q 046194 751 GRKAANMLFEME--PQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKK 799 (934)
Q Consensus 751 a~~~~~~~~~~~--p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 799 (934)
...+++-+.... -.-+..|...+..+...|++.+|.++++.=.+++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 666777665543 5567789999999999999999999988877665443
No 311
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.37 E-value=3.9e+02 Score=25.68 Aligned_cols=16 Identities=0% Similarity=-0.197 Sum_probs=8.5
Q ss_pred HHhcCChHHHHHHHhh
Q 046194 402 YADAGYLSRCLKVFFL 417 (934)
Q Consensus 402 y~~~g~~~~A~~~f~~ 417 (934)
.+..|+.+-+..+++.
T Consensus 108 A~~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 108 AIERRNMTLVTLLVEN 123 (273)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHC
Confidence 3445555555555554
No 312
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=24.27 E-value=18 Score=23.46 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=9.8
Q ss_pred cccccCchhhHH
Q 046194 890 NLRVCGDCHSAF 901 (934)
Q Consensus 890 n~~~~~~ch~~~ 901 (934)
+-|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 789999999543
No 313
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.86 E-value=4.2e+02 Score=24.18 Aligned_cols=152 Identities=9% Similarity=0.054 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 046194 494 TTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACAS 573 (934)
Q Consensus 494 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 573 (934)
..+....+....+.|..+....+.+.+. .+|...-...+.++.+.+.. ++...+.++.. .+|...-...+.++..
T Consensus 33 ~~vR~~A~~~L~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 33 YYVRRAAAYALGKIGDERAVEPLIKALK-DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 107 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333444444444444322222333222 22444444444455555543 33333333332 3555555555555555
Q ss_pred hhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHH
Q 046194 574 VATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQM 653 (934)
Q Consensus 574 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 653 (934)
.+..+....+.. +. -.++..+-...+.++.+.|..+....+...+..+|...-...+.++.+.+. .++...+.++
T Consensus 108 ~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~ 182 (211)
T 3ltm_A 108 IGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKL 182 (211)
T ss_dssp HCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred hCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 554332222222 22 245666666677777777775544445555556666666667777777765 4566666666
Q ss_pred HH
Q 046194 654 KL 655 (934)
Q Consensus 654 ~~ 655 (934)
.+
T Consensus 183 l~ 184 (211)
T 3ltm_A 183 AE 184 (211)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 314
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.69 E-value=3.9e+02 Score=24.66 Aligned_cols=18 Identities=6% Similarity=-0.101 Sum_probs=9.0
Q ss_pred HHhhhCCCChHHHHHHhhc
Q 046194 131 AMYGSCLESTDCARRIFEE 149 (934)
Q Consensus 131 ~~y~~~~g~~~~a~~~f~~ 149 (934)
...++. |+++..+.+++.
T Consensus 11 ~~A~~~-g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYS-GKLDELKERILA 28 (231)
T ss_dssp HHHHHH-TCHHHHHHHHHH
T ss_pred HHHHHh-CCHHHHHHHHHh
Confidence 333444 555555555543
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.57 E-value=78 Score=25.46 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=33.3
Q ss_pred CChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHH
Q 046194 138 ESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFK 176 (934)
Q Consensus 138 g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 176 (934)
...+.|+++++.++.++...|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 357899999999999999999999999988787665543
No 316
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=23.05 E-value=15 Score=20.28 Aligned_cols=13 Identities=46% Similarity=1.513 Sum_probs=8.7
Q ss_pred ccCCccc--CCCCCC
Q 046194 922 HFNDGKC--SCGDYW 934 (934)
Q Consensus 922 ~f~~g~c--sc~~~~ 934 (934)
+|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5777877 466655
No 317
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.89 E-value=2.1e+02 Score=28.82 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhc-----
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRA----- 711 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~----- 711 (934)
+...|++++|+..|+... +...+.........+++.++.....+ .....-++.-.+.
T Consensus 112 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icre--------Yilal~iEl~Rr~l~~~~ 173 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSIL----------LSVPLLVVDNKQEIAEAQQLITICRE--------YIVGLSMETERKKLPKET 173 (320)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHGGGCCCCSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTSCCCS
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhhheeeccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcccCC
Q ss_pred -CChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHH
Q 046194 712 -GELDKIEEFINKM---PITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDV 785 (934)
Q Consensus 712 -g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a 785 (934)
.+.....++---+ ++.|. ..++.+-+..+.++ +|+..|...+++++++.|.... .++|
T Consensus 174 ~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~--KNy~tAa~fArrLLel~p~~~~--------------~~qA 237 (320)
T 3mkr_B 174 LEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKL--KNFRTAAAFARRLLELGPKPEV--------------AQQT 237 (320)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT--TBHHHHHHHHHHHHHTCCCHHH--------------HHHH
T ss_pred chhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhcCCCHHH--------------HHHH
Q ss_pred HHHHHHHHhCC
Q 046194 786 AKARKAMKEAE 796 (934)
Q Consensus 786 ~~~~~~m~~~~ 796 (934)
.++...-.+++
T Consensus 238 rkil~~ce~~~ 248 (320)
T 3mkr_B 238 RKILSACEKNP 248 (320)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHhcCC
No 318
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.74 E-value=75 Score=28.14 Aligned_cols=62 Identities=10% Similarity=0.245 Sum_probs=41.5
Q ss_pred HHHHHHhhccCChhHHHHHHhcCCCCC---cccHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCC
Q 046194 295 NGLVNMYAKCGTIDDSRSVFRFMIGKD---SVSWNTMISGLDQNGC--YEEAIMNFCAMRRDGLMSS 356 (934)
Q Consensus 295 ~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 356 (934)
+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 567788888899999999999887662 2344445555555322 3456777777777664443
No 319
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.52 E-value=2.1e+02 Score=26.70 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=31.2
Q ss_pred hHHHHHHhhcCChhhHHHhhccCCC----CChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCC
Q 046194 24 NTLINVYVRVGDLASASKLFDEMPD----RNSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLN 85 (934)
Q Consensus 24 ~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 85 (934)
++.+...++.|+++....+++.-+. ++..-++.|..+ ++.|+.+ +++.+.+.|..++
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~ 67 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTE----IVEFLLQLGVPVN 67 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCSC
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHH----HHHHHHHhCCCCC
Confidence 4456666777888888777765432 344444444433 3444433 4445555665544
No 320
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=22.12 E-value=2.2e+02 Score=24.93 Aligned_cols=87 Identities=14% Similarity=0.307 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHCCcccCCCccc------------ccCCchhhhhhhhcccHHHHHHHHhcC--CCCCcEEEEcc----
Q 046194 829 YEKLKELNQKMRDAGYVPQTKFAL------------FDLEPESKEDLVSYHSEKIAVAFVLTR--NSKLPIRIMKN---- 890 (934)
Q Consensus 829 ~~~l~~l~~~m~~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~n---- 890 (934)
+++|.+.-.+..+..|.|-.++.. ....-|.-..-+.-|-|+.||...... ..-..|-|+..
T Consensus 15 ~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~G~~~l~~i~v~~~~~~~ 94 (146)
T 2fr5_A 15 VQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSDLQEE 94 (146)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCSSS
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhCCCCceEEEEEEeCCCCc
Confidence 455566666666778888433211 111111112234689999999887763 22245556654
Q ss_pred -ccccCchhhHHHhHhhhhCcEEEEecC
Q 046194 891 -LRVCGDCHSAFKFISKIVGREIVLRDS 917 (934)
Q Consensus 891 -~~~~~~ch~~~~~~s~~~~~~~~~~d~ 917 (934)
+--||.|-.++.-.. .+-+|++.+.
T Consensus 95 ~~~PCG~Crq~l~E~~--~~~~v~~~~~ 120 (146)
T 2fr5_A 95 FISPCGACRQVMREFG--TDWAVYMTKP 120 (146)
T ss_dssp CCCCCHHHHHHHHHTC--SSCEEEEECT
T ss_pred ccCCCHHHHHHHHHhC--CCCEEEEECC
Confidence 567999998887776 5667777654
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.01 E-value=4e+02 Score=23.33 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC--CCcchHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHh
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSER--RDEVSWNSMISGYIHNEL--LPKAMNLVWFMMQRGQRLDHF 562 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 562 (934)
+.+++-|...|+.++|.+.++++... -..+....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 67888899999999999999998642 022333444455554322 456778888888777555443
No 322
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=21.41 E-value=1.5e+02 Score=25.86 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHCCcccCCCccc------------ccCCchhhhhhhhcccHHHHHHHHhcC--CCCCcEEEEcc----
Q 046194 829 YEKLKELNQKMRDAGYVPQTKFAL------------FDLEPESKEDLVSYHSEKIAVAFVLTR--NSKLPIRIMKN---- 890 (934)
Q Consensus 829 ~~~l~~l~~~m~~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~n---- 890 (934)
|.+|.+.-.+.++.-|.|-.++.. ....-|.-..-+..|.|+.||...... ..-..|-|+..
T Consensus 12 ~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G~~~~~aiav~~~~~~~ 91 (141)
T 2d30_A 12 SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIAIVADTKRP 91 (141)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCSSC
T ss_pred HHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCCCCceEEEEEEeCCCCc
Confidence 556666666777888988444322 111111112234678999999877763 22345556644
Q ss_pred ccccCchhhHHHhHhhhhCcEEEEec
Q 046194 891 LRVCGDCHSAFKFISKIVGREIVLRD 916 (934)
Q Consensus 891 ~~~~~~ch~~~~~~s~~~~~~~~~~d 916 (934)
+.-||.|-.++.-+.. .+-+|++-+
T Consensus 92 ~~PCG~CRQ~l~E~~~-~~~~V~~~~ 116 (141)
T 2d30_A 92 VPPCGACRQVMVELCK-QDTKVYLSN 116 (141)
T ss_dssp CCCCHHHHHHHHHHSC-TTCEEEEEC
T ss_pred cCcCHHHHHHHHHhcC-CCeEEEEEC
Confidence 5679999887766643 345677665
No 323
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.24 E-value=2.6e+02 Score=27.07 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCCCc---------cchhHHHHHHHhcCChHHHHHHHHH
Q 046194 216 QQILAMVKKAGLLSDL---------YVGSALVSGFARLGNFYYARKIFEQ 256 (934)
Q Consensus 216 ~~i~~~~~~~g~~~~~---------~~~~~li~~~~~~g~~~~A~~l~~~ 256 (934)
.++.+.+.+.|..++. ..-.+-+...++.|+.+-+.-+++.
T Consensus 206 ~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255 (273)
T ss_dssp HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC
Confidence 4566666666654431 1223445556677877766666654
No 324
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.91 E-value=4.5e+02 Score=23.44 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=37.0
Q ss_pred HHHHHHHHHhc--CCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcC
Q 046194 751 GRKAANMLFEM--EPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKK 799 (934)
Q Consensus 751 a~~~~~~~~~~--~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 799 (934)
...+++.+... .-.-+..|...+..|...|++.+|.++++.-.+++.+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 45566655543 45567789999999999999999999998877765443
No 325
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.72 E-value=3.2e+02 Score=26.71 Aligned_cols=210 Identities=11% Similarity=0.065 Sum_probs=88.0
Q ss_pred CchhhhHHHHHHhhcCChhhHHHhhccC--------------CCCChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCC
Q 046194 19 DVFLCNTLINVYVRVGDLASASKLFDEM--------------PDRNSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLL 84 (934)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~A~~~f~~~--------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 84 (934)
+.....+.+...+..|+.+...+..... ..++..-++.|. ..+..|+.+ +++.+.+.|..+
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~-~Aa~~g~~~----~v~~Ll~~g~~~ 85 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMH-EAAIHGHQL----SLRNLISQGWAV 85 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHH-HHHHTTCHH----HHHHHHHTTCCS
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHH-HHHHcCCHH----HHHHHHHCCCCC
Confidence 3344566677777888877766643322 123444445544 334566654 455556677665
Q ss_pred Ccc---cHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCch--hhHHHHHHhhhCCCChHHHHHHhhccCCCCcc--c
Q 046194 85 NRY---ALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGL--VSNVLIAMYGSCLESTDCARRIFEEIETRDLI--S 157 (934)
Q Consensus 85 ~~~---~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~~--~ 157 (934)
+.. -.+.|..|+.. +.. ++...+++.|..++.. -..+-+...+.. |..+.++.+++.-...+.. -
T Consensus 86 ~~~~~~g~t~L~~A~~~---g~~----~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~g 157 (285)
T 3d9h_A 86 NIITADHVSPLHEACLG---GHL----SCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQPESDL 157 (285)
T ss_dssp CEECTTCCCHHHHHHHT---TCH----HHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSSCSCTT
T ss_pred CCcCCCCCCHHHHHHHC---CcH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CHHHHHHHHHHCCCCCCCCCCC
Confidence 432 33445544433 444 3445556666554322 122333334445 8888777777765433222 2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeH--HHHHHHHhcCccccchHHHHHHHHHHHhCCCCCcc-ch
Q 046194 158 WNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTF--GSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLY-VG 234 (934)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~--~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~ 234 (934)
++.+ ...++.|+.+ +++.+.+.|. .++.... .+.|..++..+.. ++.+.+.+.|..++.. ..
T Consensus 158 ~t~L-~~A~~~g~~~----~v~~Ll~~g~----~~~~~d~~g~t~L~~A~~~~~~------~~v~~Ll~~ga~~~~~~~g 222 (285)
T 3d9h_A 158 ASPI-HEAARRGHVE----CVNSLIAYGG----NIDHKISHLGTPLYLACENQQR------ACVKKLLESGADVNQGKGQ 222 (285)
T ss_dssp SCHH-HHHHHHTCHH----HHHHHHHTTC----CTTCCBTTTBCHHHHHHHTTCH------HHHHHHHHTTCCTTCCBTT
T ss_pred CCHH-HHHHHcCCHH----HHHHHHHCCC----CCCCcCCCCCCHHHHHHHcCcH------HHHHHHHHCCCCCCCCCCC
Confidence 3333 3334455544 4444455554 4433211 1223333344432 4555556667666542 22
Q ss_pred hHHHHHHHhcCChHHHHHHHHH
Q 046194 235 SALVSGFARLGNFYYARKIFEQ 256 (934)
Q Consensus 235 ~~li~~~~~~g~~~~A~~l~~~ 256 (934)
.+.+...++.|+.+-+.-+++.
T Consensus 223 ~t~L~~A~~~~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 223 DSPLHAVVRTASEELACLLMDF 244 (285)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHC
Confidence 3455556677777666655554
No 326
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.54 E-value=5.7e+02 Score=24.55 Aligned_cols=116 Identities=9% Similarity=-0.075 Sum_probs=51.3
Q ss_pred CCHhHHHHHHHHHhchhhH--HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHH
Q 046194 559 LDHFTFATVLSACASVATL--ERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISG 636 (934)
Q Consensus 559 p~~~t~~~ll~a~~~~~~~--~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 636 (934)
++...-...+.++...+.. .....+...+.+.--.++..+-...+.++.+.|+.+....+...+..++...-...+.+
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~a 182 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFA 182 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4554555555555554421 00112222222222245666666666666666654333333333344554444444455
Q ss_pred HHHcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCc
Q 046194 637 YARHG-HGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL 677 (934)
Q Consensus 637 ~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 677 (934)
+...| ....+...+.++.+ .+|...-...+.++.+.|.
T Consensus 183 L~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 183 ININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp HHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTC
T ss_pred HHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCC
Confidence 55544 23445544444443 3444444445555555553
No 327
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.39 E-value=1e+02 Score=24.71 Aligned_cols=38 Identities=21% Similarity=0.152 Sum_probs=32.5
Q ss_pred CChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHH
Q 046194 305 GTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAI 342 (934)
Q Consensus 305 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 342 (934)
...+.|+++++.++.+...+|..++.++...|+..-|-
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 47899999999999999999999999998777766553
No 328
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=20.10 E-value=5.2e+02 Score=23.92 Aligned_cols=53 Identities=11% Similarity=-0.025 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC
Q 046194 643 GDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP 696 (934)
Q Consensus 643 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 696 (934)
..++.++|..|...||--. +.-|......+...|++++|.++|+.-.+. +-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 4566677777766665544 333555555566666777777766665553 3344
Done!