BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046195
         (730 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer
 pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer
 pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer-Tail Complex
 pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer-Tail Complex
 pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer-Tail Complex
 pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer-Tail Complex
          Length = 365

 Score = 35.8 bits (81), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 75  SQHIFVNSMNENGDRSYDATYLPLPEEGAECEKEYFRKL-DEEFNKVEKFYKSKVE-EVM 132
           ++HI V +MNE+  RS+    + + +E  E +K+   KL   +    EK  K+  E  V+
Sbjct: 196 NRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVL 255

Query: 133 DEAENLSKQMDAL 145
           DEA+N++K + AL
Sbjct: 256 DEAKNINKSLSAL 268


>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
          Length = 349

 Score = 35.4 bits (80), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 75  SQHIFVNSMNENGDRSYDATYLPLPEEGAECEKEYFRKL-DEEFNKVEKFYKSKVE-EVM 132
           ++H+ V +MNE+  RS+    + + +E  + E++   KL   +    EK  K+  E  V+
Sbjct: 189 NRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVL 248

Query: 133 DEAENLSKQMDAL 145
           DEA+N++K + AL
Sbjct: 249 DEAKNINKSLSAL 261


>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
 pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
           Docked Into The 9-Angstrom Cryo-Em Map Of
           Nucleotide-Free Kinesin Complexed To The Microtubule
          Length = 325

 Score = 35.0 bits (79), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 75  SQHIFVNSMNENGDRSYDATYLPLPEEGAECEKEYFRKL-DEEFNKVEKFYKSKVE-EVM 132
           ++H+ V +MNE+  RS+    + + +E  + E++   KL   +    EK  K+  E  V+
Sbjct: 189 NRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVL 248

Query: 133 DEAENLSKQMDAL 145
           DEA+N++K + AL
Sbjct: 249 DEAKNINKSLSAL 261


>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
           Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
           Map Of Doublecortin-Microtubules Decorated With Kinesin
          Length = 340

 Score = 35.0 bits (79), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 75  SQHIFVNSMNENGDRSYDATYLPLPEEGAECEKEYFRKL-DEEFNKVEKFYKSKVE-EVM 132
           ++H+ V +MNE+  RS+    + + +E  + E++   KL   +    EK  K+  E  V+
Sbjct: 189 NRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVL 248

Query: 133 DEAENLSKQMDAL 145
           DEA+N++K + AL
Sbjct: 249 DEAKNINKSLSAL 261


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,322,700
Number of Sequences: 62578
Number of extensions: 757230
Number of successful extensions: 2361
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2353
Number of HSP's gapped (non-prelim): 12
length of query: 730
length of database: 14,973,337
effective HSP length: 106
effective length of query: 624
effective length of database: 8,340,069
effective search space: 5204203056
effective search space used: 5204203056
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)