Query 046195
Match_columns 730
No_of_seqs 268 out of 1138
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 16:46:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2akf_A Coronin-1A; coiled coil 39.1 75 0.0026 20.8 5.0 28 112-143 3-30 (32)
2 3pp5_A BRK1, protein brick1; t 38.7 1.2E+02 0.004 24.6 7.3 42 106-147 18-59 (73)
3 3p8c_E Probable protein brick1 37.7 1.2E+02 0.0042 24.6 7.3 42 106-147 18-59 (75)
4 2l2r_A Antimicrobial peptide e 31.5 16 0.00053 24.9 0.9 10 557-566 9-18 (37)
5 4hkr_A Calcium release-activat 29.4 4E+02 0.014 25.8 11.4 17 328-344 30-46 (214)
6 2iub_A CORA, divalent cation t 22.6 3.5E+02 0.012 28.3 10.2 28 233-260 222-249 (363)
7 2l5g_B Putative uncharacterize 20.4 1.7E+02 0.0059 21.0 4.6 27 110-140 11-37 (42)
8 3t98_B Nucleoporin NUP58/NUP45 19.1 4.1E+02 0.014 22.3 11.3 28 121-148 7-34 (93)
9 2pnv_A Small conductance calci 15.4 2E+02 0.0068 20.8 4.1 23 125-147 15-37 (43)
10 2p2u_A HOST-nuclease inhibitor 14.5 3E+02 0.01 25.7 6.5 41 108-148 34-74 (171)
No 1
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=39.07 E-value=75 Score=20.84 Aligned_cols=28 Identities=11% Similarity=0.425 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046195 112 KLDEEFNKVEKFYKSKVEEVMDEAENLSKQMD 143 (730)
Q Consensus 112 ~Ld~ELeKVn~Fy~~k~~El~~r~~~L~~ql~ 143 (730)
.|++|+.|++.-. .++++|++.|++.++
T Consensus 3 rlee~~r~l~~iv----q~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIV----QKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 5778888887654 467778888877654
No 2
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=38.69 E-value=1.2e+02 Score=24.57 Aligned_cols=42 Identities=12% Similarity=0.287 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046195 106 EKEYFRKLDEEFNKVEKFYKSKVEEVMDEAENLSKQMDALIA 147 (730)
Q Consensus 106 e~~Ff~~Ld~ELeKVn~Fy~~k~~El~~r~~~L~~ql~~l~~ 147 (730)
..+|.+.+...+.|+.+|-..-..-++.|+..+..+++.+..
T Consensus 18 nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~ 59 (73)
T 3pp5_A 18 QREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDR 59 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999888877777777777777766543
No 3
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=37.72 E-value=1.2e+02 Score=24.59 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046195 106 EKEYFRKLDEEFNKVEKFYKSKVEEVMDEAENLSKQMDALIA 147 (730)
Q Consensus 106 e~~Ff~~Ld~ELeKVn~Fy~~k~~El~~r~~~L~~ql~~l~~ 147 (730)
..+|.+.+...+.++.+|-..-..-++.|+..|+.+++.+..
T Consensus 18 nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr 59 (75)
T 3p8c_E 18 NREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALER 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999888777777777777777766543
No 4
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=31.46 E-value=16 Score=24.95 Aligned_cols=10 Identities=50% Similarity=0.853 Sum_probs=8.5
Q ss_pred HHHHHHhhhc
Q 046195 557 LQCFRRLVEE 566 (730)
Q Consensus 557 ~QClrry~dt 566 (730)
.||+|||.|.
T Consensus 9 rqC~Rr~ede 18 (37)
T 2l2r_A 9 SQCMRRHEDE 18 (37)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHhccCC
Confidence 5999999875
No 5
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=29.44 E-value=4e+02 Score=25.81 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=11.7
Q ss_pred hhhhhHHHHHHHHHHHH
Q 046195 328 SFCIGLFVGCSIALVLG 344 (730)
Q Consensus 328 ~f~~G~~~G~~~~l~~~ 344 (730)
...++++.|.+++.++-
T Consensus 30 S~lSALLaGFAMVAmVE 46 (214)
T 4hkr_A 30 SKTSALLSGFAMVAMVE 46 (214)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccceeeEEE
Confidence 34678888888766544
No 6
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.58 E-value=3.5e+02 Score=28.27 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 046195 233 AFAEFYLRLRHLKSYSFLNILAFSKIMK 260 (730)
Q Consensus 233 a~~e~y~~l~~L~~f~~LN~tgf~KIlK 260 (730)
.+.++-+++..|+....-+...+.++.+
T Consensus 222 ~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 249 (363)
T 2iub_A 222 RTHQLKRNLVELRKTIWPLREVLSSLYR 249 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556667777777778888888775
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.40 E-value=1.7e+02 Score=20.95 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046195 110 FRKLDEEFNKVEKFYKSKVEEVMDEAENLSK 140 (730)
Q Consensus 110 f~~Ld~ELeKVn~Fy~~k~~El~~r~~~L~~ 140 (730)
...+|+|++|+. +|..+++.|...|++
T Consensus 11 I~kVdrEI~Kte----~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 11 MDRVDREITMVE----QQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 346677777764 356666666665543
No 8
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=19.09 E-value=4.1e+02 Score=22.31 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046195 121 EKFYKSKVEEVMDEAENLSKQMDALIAF 148 (730)
Q Consensus 121 n~Fy~~k~~El~~r~~~L~~ql~~l~~~ 148 (730)
..||.....++.+|+..++.+++.+..+
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~ 34 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENH 34 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777877777777776543
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=15.44 E-value=2e+02 Score=20.78 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046195 125 KSKVEEVMDEAENLSKQMDALIA 147 (730)
Q Consensus 125 ~~k~~El~~r~~~L~~ql~~l~~ 147 (730)
.+..+++.+|+..|+.+++.+..
T Consensus 15 ~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 15 NERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888877654
No 10
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=14.47 E-value=3e+02 Score=25.71 Aligned_cols=41 Identities=10% Similarity=0.200 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046195 108 EYFRKLDEEFNKVEKFYKSKVEEVMDEAENLSKQMDALIAF 148 (730)
Q Consensus 108 ~Ff~~Ld~ELeKVn~Fy~~k~~El~~r~~~L~~ql~~l~~~ 148 (730)
+--..++.|+++|...|....+.+..+++.|+..+..+...
T Consensus 34 ~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~ 74 (171)
T 2p2u_A 34 EIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATL 74 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457889999999999999999999999999999988875
Done!