Query 046195
Match_columns 730
No_of_seqs 268 out of 1138
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 16:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046195.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046195hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 7.5 2.2E+02 0.016 16.4 3.2 17 379-395 10-26 (27)
2 d2q66a1 a.160.1.1 (A:202-351) 6.2 1.3E+02 0.0097 25.5 2.6 16 330-345 26-41 (150)
3 d2nsza1 a.118.1.14 (A:322-450) 5.8 1.5E+02 0.011 24.1 2.8 29 290-318 4-32 (129)
4 d1wlza1 a.39.1.7 (A:229-311) D 5.7 4.1E+02 0.03 18.8 5.3 36 243-278 10-46 (83)
5 d1khba1 c.91.1.1 (A:260-622) C 5.5 2.3E+02 0.017 27.4 4.3 33 111-143 324-361 (363)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 4.8 3.8E+02 0.027 16.7 3.4 16 330-345 14-29 (37)
7 d1sfka_ a.190.1.1 (A:) Flavivi 4.7 1.6E+02 0.012 21.7 1.9 27 241-267 39-65 (73)
8 d1q79a1 a.160.1.1 (A:215-364) 4.5 1.9E+02 0.014 24.4 2.6 16 330-345 26-41 (150)
9 d1q90n_ f.23.27.1 (N:) PetN su 4.4 3.5E+02 0.025 16.1 2.9 15 381-395 16-30 (31)
10 d2btoa2 d.79.2.1 (A:253-432) T 4.3 3.2E+02 0.024 23.1 4.2 44 254-303 130-175 (180)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.51 E-value=2.2e+02 Score=16.39 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhcC
Q 046195 379 LHMLMYAGNVYFWRLYR 395 (730)
Q Consensus 379 l~~~~~~~n~~~w~~~~ 395 (730)
|..+-|++.+-+|-+.|
T Consensus 10 lvvftwsiamvvwgrng 26 (27)
T d2e74h1 10 LVVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHhhheeeeEEEccCC
Confidence 34456788888898876
No 2
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.15 E-value=1.3e+02 Score=25.50 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHH
Q 046195 330 CIGLFVGCSIALVLGL 345 (730)
Q Consensus 330 ~~G~~~G~~~~l~~~~ 345 (730)
..|++.|++++++++-
T Consensus 26 ~~GylGGI~waILvAr 41 (150)
T d2q66a1 26 IFGFPGGVAWAMLVAR 41 (150)
T ss_dssp GGTSCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHH
Confidence 5899999998776554
No 3
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.77 E-value=1.5e+02 Score=24.14 Aligned_cols=29 Identities=7% Similarity=0.208 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHhhhcCC
Q 046195 290 TKLMERVEATFIKHFANSNRRKGMDILRP 318 (730)
Q Consensus 290 ~~l~~~ve~ly~~~f~~g~~~~a~~~Lr~ 318 (730)
+.|.++++.+...+|.+||.++|...++.
T Consensus 4 ~~l~kk~~~ll~EY~~~~D~~Ea~~~l~e 32 (129)
T d2nsza1 4 NHLVKEIDMLLKEYLLSGDISEAEHCLKE 32 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46788999999999999999988877764
No 4
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.66 E-value=4.1e+02 Score=18.77 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=20.9
Q ss_pred HHhhHHHhHHHHHHHHHHhhhhcc-CCcccHHHHHHh
Q 046195 243 HLKSYSFLNILAFSKIMKKYDKIT-STKASDSYMKMV 278 (730)
Q Consensus 243 ~L~~f~~LN~tgf~KIlKK~DK~~-~~~~~~~y~~~v 278 (730)
.|++...-+...++++.+.+|+.- |.-....+.+.+
T Consensus 10 ~l~~~i~~~~~~l~~~F~~~D~~~~G~i~~~ef~~~l 46 (83)
T d1wlza1 10 RLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAIC 46 (83)
T ss_dssp HHHHHHHHTHHHHHHHHHHHCTTCSSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCceEChhHHHHHH
Confidence 344445556777888888888764 333434444333
No 5
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.53 E-value=2.3e+02 Score=27.44 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 046195 111 RKLDEEFNKVEKFYKSKVE-----EVMDEAENLSKQMD 143 (730)
Q Consensus 111 ~~Ld~ELeKVn~Fy~~k~~-----El~~r~~~L~~ql~ 143 (730)
+...+|++.+.++|.++.+ |+.++++.|+++++
T Consensus 324 ~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~ 361 (363)
T d1khba1 324 EFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRIS 361 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 4567899999999976653 67777666666654
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.82 E-value=3.8e+02 Score=16.73 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHH
Q 046195 330 CIGLFVGCSIALVLGL 345 (730)
Q Consensus 330 ~~G~~~G~~~~l~~~~ 345 (730)
+.+++.|..++...++
T Consensus 14 rtsLy~GlLlifvl~v 29 (37)
T d2axtl1 14 RTSLYLGLLLILVLAL 29 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5678888766544443
No 7
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=4.71 E-value=1.6e+02 Score=21.71 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=23.7
Q ss_pred HHHHhhHHHhHHHHHHHHHHhhhhccC
Q 046195 241 LRHLKSYSFLNILAFSKIMKKYDKITS 267 (730)
Q Consensus 241 l~~L~~f~~LN~tgf~KIlKK~DK~~~ 267 (730)
-.+|+.+..+|...-.|+||+|.|-.+
T Consensus 39 ~~ll~RW~~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 39 RAVLDRWRSVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 367899999999999999999998654
No 8
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.55 E-value=1.9e+02 Score=24.42 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHH
Q 046195 330 CIGLFVGCSIALVLGL 345 (730)
Q Consensus 330 ~~G~~~G~~~~l~~~~ 345 (730)
..|++.|++++++++-
T Consensus 26 ~~GflGGI~waILvAr 41 (150)
T d1q79a1 26 ILGFLGGVSWAMLVAR 41 (150)
T ss_dssp TTTSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHH
Confidence 5799999998776554
No 9
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.42 E-value=3.5e+02 Score=16.09 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhcC
Q 046195 381 MLMYAGNVYFWRLYR 395 (730)
Q Consensus 381 ~~~~~~n~~~w~~~~ 395 (730)
.+.|++.+-+|-+.|
T Consensus 16 tfsfslslvvwgrsg 30 (31)
T d1q90n_ 16 MFSFSLSLVVWGRSG 30 (31)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred hheeeEEEEEEeccC
Confidence 456777788888876
No 10
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}
Probab=4.33 E-value=3.2e+02 Score=23.08 Aligned_cols=44 Identities=14% Similarity=0.296 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhccCCc-ccHHHHHH-hhhcCCCChHHHHHHHHHHHHHHHHH
Q 046195 254 AFSKIMKKYDKITSTK-ASDSYMKM-VDKSYLGSSNEVTKLMERVEATFIKH 303 (730)
Q Consensus 254 gf~KIlKK~DK~~~~~-~~~~y~~~-v~~~~f~~~~~l~~l~~~ve~ly~~~ 303 (730)
-|.+|++||||..... --+.|.+. ++. +++++-.+.++++-..+
T Consensus 130 ~f~~~~~~F~~m~~rkAflh~Y~~egmee------~eF~ea~~~~~~li~eY 175 (180)
T d2btoa2 130 VLDRICHNFDKLWQRKAFANWYLNEGMSE------EQINVLRASAQELVQSY 175 (180)
T ss_dssp HHHHHHHHHHHHHTTTTTHHHHHTTTCCH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChhHHHhcCCCCcH------HHHHHHHHHHHHHHHHH
Confidence 4778899999987653 44566542 332 33444444455544443
Done!