BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046196
(1436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 51/248 (20%)
Query: 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 896
H ITF +IR+ PD + L ++ + + G + ++G SG+GK+TL +
Sbjct: 2 HDITFRNIRFRYK----------PDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 50
Query: 897 LAGRKTGGYV--SGSITISGYPKN---------------QETFARISGYCEQTDIHSPHV 939
+ Y+ +G + I G+ Q+ + + +P +
Sbjct: 51 I----QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 106
Query: 940 TVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRL 999
+V E ++Y+A L + S+ R+ + +VG G +GLS QR+R+
Sbjct: 107 SV-EKVIYAAKLAGAHDFISELREGY--------------NTIVGEQG-AGLSGGQRQRI 150
Query: 1000 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1059
IA LV NP I+ DE TS LD + ++MR + + + GRTV+ H+ S D
Sbjct: 151 AIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNAD 207
Query: 1060 ELLLMKRG 1067
+++M++G
Sbjct: 208 RIIVMEKG 215
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 19/192 (9%)
Query: 224 FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
++P+ I +DL + + + R GV + VL S + + P +
Sbjct: 55 YIPENGQVLIDGHDLALADPN------WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 108
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
+ ++ AA L G D++ + L +T+VG E G+SGGQR+R+ LV
Sbjct: 109 EKVIYAAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNN 159
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
+ L DE ++ LD + + I+ ++ + I G VI ++ T + D +I++ G
Sbjct: 160 PKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVI-IIAHRLSTVKNADRIIVMEKG 215
Query: 404 QIVYQGPRENVL 415
+IV QG + +L
Sbjct: 216 KIVEQGKHKELL 227
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 112/248 (45%), Gaps = 51/248 (20%)
Query: 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 896
H ITF +IR+ PD + L ++ + + G + ++G +G+GK+TL +
Sbjct: 2 HDITFRNIRFRYK----------PDSPV-ILDNINLSIKQGEVIGIVGRAGSGKSTLTKL 50
Query: 897 LAGRKTGGYV--SGSITISGYPKN---------------QETFARISGYCEQTDIHSPHV 939
+ Y+ +G + I G+ Q+ + + +P +
Sbjct: 51 I----QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 106
Query: 940 TVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRL 999
+V E ++Y+A L + S+ R+ + +VG G +GLS QR+R+
Sbjct: 107 SV-EKVIYAAKLAGAHDFISELREGY--------------NTIVGEQG-AGLSGGQRQRI 150
Query: 1000 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1059
IA LV NP I+ DE TS LD + ++MR + + + GRTV+ H+ S D
Sbjct: 151 AIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNAD 207
Query: 1060 ELLLMKRG 1067
+++M++G
Sbjct: 208 RIIVMEKG 215
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 19/192 (9%)
Query: 224 FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
++P+ I +DL + + + R GV + VL S + + P +
Sbjct: 55 YIPENGQVLIDGHDLALADPN------WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 108
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
+ ++ AA L G D++ + L +T+VG E G+SGGQR+R+ LV
Sbjct: 109 EKVIYAAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNN 159
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
+ L DE ++ LD + + I+ ++ + I G VI ++ T + D +I++ G
Sbjct: 160 PKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVI-IIAHRLSTVKNADRIIVMEKG 215
Query: 404 QIVYQGPRENVL 415
+IV QG + +L
Sbjct: 216 KIVEQGKHKELL 227
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 43/300 (14%)
Query: 866 FLKGVSGAFRPGVLTAL---------------MGVSGAGKTTLMDVLAGR---KTGG-YV 906
+K VS F+ G + AL +G SGAGKTT M ++AG TG Y
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 907 SGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYS-AWLRLPPEVDSDTRKMF 965
+ S R G QT P++T +E++ + +++ E + RK
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKRV 121
Query: 966 XXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR- 1024
I L P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 122 EEVAKILD----IHHVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 1025 --AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG-------EEIYVGP 1075
+A +++ V++ + G T++ H P+ DIF D + ++ +G E++Y P
Sbjct: 176 RDSARALVKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Query: 1076 LGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGN 1135
+ + LI ++G EG + V+ + A +GI V + ++ K +
Sbjct: 233 VSIQVASLIGEINELEG-KVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDD 291
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 24/207 (11%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
LK V+ F G + ++G +G+GKTTL+ +LAG +G I + G P + +
Sbjct: 27 LKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSPADPFLLRKNV 83
Query: 927 GYCEQT-DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGL 985
GY Q TV E + +S L + +S+ RK LVGL
Sbjct: 84 GYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKRIKKVL-----------ELVGL 130
Query: 986 PGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1040
G++ LS Q++RL IA L + + +DEP S LD + + + + + + G
Sbjct: 131 SGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEG 190
Query: 1041 RTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ ++ H+ ++ D D +L + G
Sbjct: 191 KGIILVTHE--LEYLDDMDFILHISNG 215
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 56/216 (25%)
Query: 211 SGRVTYNGHGMEEFVPQRTSAYISQN-DLHIGEMTVRETLAFSARCQGVGPRYEVLQELS 269
+G + +G + F+ ++ Y+ QN I TV E +AFS G+ E+
Sbjct: 64 AGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMR 118
Query: 270 RREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE--VCADTMVGDEMLRGIS 327
+R K VL+++GL AD + +S
Sbjct: 119 KRIKK-----------------------------VLELVGLSGLAAADPL-------NLS 142
Query: 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTT---YQIVNSLRQSIHILNGTAVISLL 384
GGQ++RL ML R L +DE + LD + +Q++ SL+ G +I L+
Sbjct: 143 GGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE-----GKGII-LV 196
Query: 385 QPAPETYELFDDLILLSDGQIVYQGPRENVLEFFER 420
E + D ++ +S+G I + G E EF ER
Sbjct: 197 THELEYLDDMDFILHISNGTIDFCGSWE---EFVER 229
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 51/246 (20%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
ITF +IR+ PD + L ++ + + G + ++G SG+GK+TL ++
Sbjct: 2 ITFRNIRFRYK----------PDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI- 49
Query: 899 GRKTGGYV--SGSITISGYPKN---------------QETFARISGYCEQTDIHSPHVTV 941
Y+ +G + I G+ Q+ + + +P ++V
Sbjct: 50 ---QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 106
Query: 942 YESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTI 1001
E ++Y+A L + S+ R+ + +VG G +GLS QR+R+ I
Sbjct: 107 -EKVIYAAKLAGAHDFISELREGY--------------NTIVGEQG-AGLSGGQRQRIAI 150
Query: 1002 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061
A LV NP I+ DE TS LD + ++MR + + + GRTV+ H+ S D +
Sbjct: 151 ARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRI 207
Query: 1062 LLMKRG 1067
++M++G
Sbjct: 208 IVMEKG 213
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 19/192 (9%)
Query: 224 FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
++P+ I +DL + + + R GV + VL S + + P +
Sbjct: 53 YIPENGQVLIDGHDLALADPN------WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 106
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
+ ++ AA L G D++ + L +T+VG E G+SGGQR+R+ LV
Sbjct: 107 EKVIYAAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNN 157
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
+ L DE ++ LD + + I+ ++ + I G VI ++ T + D +I++ G
Sbjct: 158 PKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVI-IIAHRLSTVKNADRIIVMEKG 213
Query: 404 QIVYQGPRENVL 415
+IV QG + +L
Sbjct: 214 KIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 51/246 (20%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
ITF +IR+ PD + L ++ + + G + ++G SG+GK+TL ++
Sbjct: 8 ITFRNIRFRYK----------PDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI- 55
Query: 899 GRKTGGYV--SGSITISGYPKN---------------QETFARISGYCEQTDIHSPHVTV 941
Y+ +G + I G+ Q+ + + +P ++V
Sbjct: 56 ---QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 112
Query: 942 YESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTI 1001
E ++Y+A L + S+ R+ + +VG G +GLS QR+R+ I
Sbjct: 113 -EKVIYAAKLAGAHDFISELREGY--------------NTIVGEQG-AGLSGGQRQRIAI 156
Query: 1002 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061
A LV NP I+ DE TS LD + ++MR + + + GRTV+ H+ S D +
Sbjct: 157 ARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRI 213
Query: 1062 LLMKRG 1067
++M++G
Sbjct: 214 IVMEKG 219
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 19/192 (9%)
Query: 224 FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
++P+ I +DL + + + R GV + VL S + + P +
Sbjct: 59 YIPENGQVLIDGHDLALADPN------WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 112
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
+ ++ AA L G D++ + L +T+VG E G+SGGQR+R+ LV
Sbjct: 113 EKVIYAAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNN 163
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
+ L DE ++ LD + + I+ ++ + I G VI ++ T + D +I++ G
Sbjct: 164 PKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVI-IIAHRLSTVKNADRIIVMEKG 219
Query: 404 QIVYQGPRENVL 415
+IV QG + +L
Sbjct: 220 KIVEQGKHKELL 231
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 43/300 (14%)
Query: 866 FLKGVSGAFRPGVLTAL---------------MGVSGAGKTTLMDVLAGR---KTGG-YV 906
+K VS F+ G + AL +G SGAGKTT M ++AG TG Y
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 907 SGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYS-AWLRLPPEVDSDTRKMF 965
+ S R G QT P++T +E++ + +++ E + RK
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKRV 121
Query: 966 XXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR- 1024
I L P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 122 EEVAKILD----IHHVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 1025 --AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG-------EEIYVGP 1075
+A +++ V++ + G T++ H P+ DIF D + ++ +G E++Y P
Sbjct: 176 RDSARALVKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Query: 1076 LGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGN 1135
+ + LI ++G EG + V+ + A +GI V + ++ K +
Sbjct: 233 VSIQVASLIGEINELEG-KVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDD 291
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISL 383
R +SGGQ++R+ LV L +DE + LD+ +L + + G ++ +
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS-ARALVKEVQSRLGVTLLVV 197
Query: 384 LQPAPETYELFDDLILLSDGQIVYQGPRENV 414
+ + + D + +L G++V G E++
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 111/246 (45%), Gaps = 51/246 (20%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
ITF +IR+ PD + L ++ + + G + ++G SG+GK+TL ++
Sbjct: 8 ITFRNIRFRYK----------PDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI- 55
Query: 899 GRKTGGYV--SGSITISGYPKN---------------QETFARISGYCEQTDIHSPHVTV 941
Y+ +G + I G+ Q+ + + +P ++V
Sbjct: 56 ---QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 112
Query: 942 YESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTI 1001
E ++Y+A L + S+ R+ + +VG G +GLS QR+R+ I
Sbjct: 113 -EKVIYAAKLAGAHDFISELREGY--------------NTIVGEQG-AGLSGGQRQRIAI 156
Query: 1002 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061
A LV NP I+ D+ TS LD + ++MR + + + GRTV+ H+ S D +
Sbjct: 157 ARALVNNPKILIFDQATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRI 213
Query: 1062 LLMKRG 1067
++M++G
Sbjct: 214 IVMEKG 219
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 19/192 (9%)
Query: 224 FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
++P+ I +DL + + + R GV + VL S + + P +
Sbjct: 59 YIPENGQVLIDGHDLALADPN------WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 112
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
+ ++ AA L G D++ + L +T+VG E G+SGGQR+R+ LV
Sbjct: 113 EKVIYAAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNN 163
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
+ L D+ ++ LD + + I+ ++ + I G VI ++ T + D +I++ G
Sbjct: 164 PKILIFDQATSALDYESEHVIMRNMHK---ICKGRTVI-IIAHRLSTVKNADRIIVMEKG 219
Query: 404 QIVYQGPRENVL 415
+IV QG + +L
Sbjct: 220 KIVEQGKHKELL 231
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 15/212 (7%)
Query: 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ- 919
DD + L+ +S +P + A G SG GK+T+ +L + +G ITI G P +
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNI 69
Query: 920 --ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXN- 976
E + G+ Q D T+ E+L Y D D ++ N
Sbjct: 70 SLENWRSQIGFVSQ-DSAIMAGTIRENLTYGLE---GDYTDEDLWQVLDLAFARSFVENM 125
Query: 977 PIR-EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
P + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + +
Sbjct: 126 PDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL-D 183
Query: 1036 TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
++ GRT + H+ S I DA D++ +++G
Sbjct: 184 SLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSL 368
+T VG+ ++ ISGGQR+RL + + L +DE + LDS + + +L
Sbjct: 130 NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY---PKNQE 920
++ LKG++ + G AL+G SG GK+T + ++ ++ + G ++I G N
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVR 460
Query: 921 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIR- 979
I G Q + T+ E++ Y R +D + + P +
Sbjct: 461 YLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
+ LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + +
Sbjct: 517 DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKARE 574
Query: 1040 GRTVVCTIHQPSI----DIFDAFDELLLMKRGGEE 1070
GRT + H+ S D+ FD +++++G +
Sbjct: 575 GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 13/85 (15%)
Query: 278 KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG--ISGGQRKRLT 335
+ D +D I KA +E N D+++K L DT+VG+ RG +SGGQ++R+
Sbjct: 488 REDVTMDEIEKAV----KEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIA 536
Query: 336 TGEMLVGPARALFMDEISTGLDSST 360
LV + L +DE ++ LD+ +
Sbjct: 537 IARALVRNPKILLLDEATSALDTES 561
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI 374
+T VGD+ + +SGGQ++R+ LV L +DE ++ LD+ + + +L ++
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA--- 1217
Query: 375 LNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVL 415
G I ++ T + D ++++ +G++ G + +L
Sbjct: 1218 REGRTCI-VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY---PKNQE 920
++ LKG++ + G AL+G SG GK+T + ++ ++ + G ++I G N
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVR 460
Query: 921 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIR- 979
I G Q + T+ E++ Y R +D + + P +
Sbjct: 461 YLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
+ LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + +
Sbjct: 517 DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKARE 574
Query: 1040 GRTVVCTIHQPSI----DIFDAFDELLLMKRGGEE 1070
GRT + H+ S D+ FD +++++G +
Sbjct: 575 GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI 374
+T VGD+ + +SGGQ++R+ LV L +DE ++ LD+ + + +L ++
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA--- 1217
Query: 375 LNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVL 415
G I ++ T + D ++++ +G++ G + +L
Sbjct: 1218 REGRTCI-VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 13/85 (15%)
Query: 278 KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG--ISGGQRKRLT 335
+ D +D I KA +E N D+++K L DT+VG+ RG +SGGQ++R+
Sbjct: 488 REDVTMDEIEKAV----KEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIA 536
Query: 336 TGEMLVGPARALFMDEISTGLDSST 360
LV + L +DE ++ LD+ +
Sbjct: 537 IARALVRNPKILLLDEATSALDTES 561
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 15/198 (7%)
Query: 873 AFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS-GSITISGYPKNQETFARISGYC 929
+ G L+G SG GKTT + ++AG T G + G ++ P + +
Sbjct: 34 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--- 90
Query: 930 EQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVS 989
Q+ PH+TVYE++ + ++ P+ + D R + I E L P +
Sbjct: 91 -QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ------IEELLNRYP--A 141
Query: 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ + +
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 1050 PSIDIFDAFDELLLMKRG 1067
++ D + +M RG
Sbjct: 202 DQVEAMTMGDRIAVMNRG 219
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 33/141 (23%)
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQI---VNSLRQSIHILNGTAVIS 382
+SGGQR+R+ +V L MDE + LD+ + + L+Q + + I
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV----TTIY 198
Query: 383 LLQPAPETYELFDDLILLSDGQIVYQG--------------------PRENVLE------ 416
+ E + D + +++ GQ++ G P N+LE
Sbjct: 199 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDG 258
Query: 417 FFERMGFKCPERKGVADFLQE 437
+ E GF+ + + D L++
Sbjct: 259 YLEGRGFRIELPQDLMDLLKD 279
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 15/198 (7%)
Query: 873 AFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS-GSITISGYPKNQETFARISGYC 929
+ G L+G SG GKTT + ++AG T G + G ++ P + +
Sbjct: 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--- 89
Query: 930 EQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVS 989
Q+ PH+TVYE++ + ++ P+ + D R + I E L P +
Sbjct: 90 -QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ------IEELLNRYP--A 140
Query: 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ + +
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 1050 PSIDIFDAFDELLLMKRG 1067
++ D + +M RG
Sbjct: 201 DQVEAMTMGDRIAVMNRG 218
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 33/141 (23%)
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQI---VNSLRQSIHILNGTAVIS 382
+SGGQR+R+ +V L MDE + LD+ + + L+Q + + I
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV----TTIY 197
Query: 383 LLQPAPETYELFDDLILLSDGQIVYQG--------------------PRENVLE------ 416
+ E + D + +++ GQ++ G P N+LE
Sbjct: 198 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDG 257
Query: 417 FFERMGFKCPERKGVADFLQE 437
+ E GF+ + + D L++
Sbjct: 258 YLEGRGFRIELPQDLMDLLKD 278
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 10/189 (5%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYVSGSITISGYPKNQE 920
LE LKG++ R G + ++G SG+GK+T + ++L G + I + N
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 921 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIRE 980
G Q PH+TV ++ + P +V R+ +++
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 130
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1040
P LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G
Sbjct: 131 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 188
Query: 1041 RTVVCTIHQ 1049
T+V H+
Sbjct: 189 MTMVVVTHE 197
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385
+SGGQ +R+ L + + DE ++ LD ++++ ++Q + G ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 196
Query: 386 PAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEV 438
E+ D ++ + G I+ +G E++ F P+ + FL +V
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 241
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 10/189 (5%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYVSGSITISGYPKNQE 920
LE LKG++ R G + ++G SG+GK+T + ++L G + I + N
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 921 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIRE 980
G Q PH+TV ++ + P +V R+ +++
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 151
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1040
P LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G
Sbjct: 152 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 1041 RTVVCTIHQ 1049
T+V H+
Sbjct: 210 MTMVVVTHE 218
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385
+SGGQ +R+ L + + DE ++ LD ++++ ++Q + G ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 217
Query: 386 PAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEV 438
E+ D ++ + G I+ +G E++ F P+ + FL +V
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 262
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 51/246 (20%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
ITF +IR+ PD + L ++ + + G + ++G SG+GK+TL ++
Sbjct: 2 ITFRNIRFRYK----------PDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI- 49
Query: 899 GRKTGGYV--SGSITISGYPKN---------------QETFARISGYCEQTDIHSPHVTV 941
Y+ +G + I G+ Q+ + + +P ++V
Sbjct: 50 ---QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 106
Query: 942 YESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTI 1001
E ++Y+A L + S+ R+ + +VG G +GLS QR+R+ I
Sbjct: 107 -EKVIYAAKLAGAHDFISELREGY--------------NTIVGEQG-AGLSGGQRQRIAI 150
Query: 1002 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061
A LV NP I+ DE TS LD + ++MR + + + GRTV+ I + D +
Sbjct: 151 ARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRI 207
Query: 1062 LLMKRG 1067
++M++G
Sbjct: 208 IVMEKG 213
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 19/192 (9%)
Query: 224 FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
++P+ I +DL + + + R GV + VL S + + P +
Sbjct: 53 YIPENGQVLIDGHDLALADPN------WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 106
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
+ ++ AA L G D++ + L +T+VG E G+SGGQR+R+ LV
Sbjct: 107 EKVIYAAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNN 157
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
+ L DE ++ LD + + I+ ++ + I G VI ++ T + D +I++ G
Sbjct: 158 PKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVI-IIAARLSTVKNADRIIVMEKG 213
Query: 404 QIVYQGPRENVL 415
+IV QG + +L
Sbjct: 214 KIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 51/246 (20%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
ITF +IR+ PD + L ++ + + G + ++G SG+GK+TL ++
Sbjct: 8 ITFRNIRFRYK----------PDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI- 55
Query: 899 GRKTGGYV--SGSITISGYPKN---------------QETFARISGYCEQTDIHSPHVTV 941
Y+ +G + I G+ Q+ + + +P ++V
Sbjct: 56 ---QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 112
Query: 942 YESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTI 1001
E ++Y+A L + S+ R+ + +VG G +GLS QR+R+ I
Sbjct: 113 -EKVIYAAKLAGAHDFISELREGY--------------NTIVGEQG-AGLSGGQRQRIAI 156
Query: 1002 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061
A LV NP I+ DE TS LD + ++MR + + + GRTV+ I + D +
Sbjct: 157 ARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRI 213
Query: 1062 LLMKRG 1067
++M++G
Sbjct: 214 IVMEKG 219
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 19/192 (9%)
Query: 224 FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
++P+ I +DL + + + R GV + VL S + + P +
Sbjct: 59 YIPENGQVLIDGHDLALADPN------WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV 112
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
+ ++ AA L G D++ + L +T+VG E G+SGGQR+R+ LV
Sbjct: 113 EKVIYAAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNN 163
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
+ L DE ++ LD + + I+ ++ + I G VI ++ T + D +I++ G
Sbjct: 164 PKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVI-IIAARLSTVKNADRIIVMEKG 219
Query: 404 QIVYQGPRENVL 415
+IV QG + +L
Sbjct: 220 KIVEQGKHKELL 231
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 21/163 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YVSGSITISGYPKNQETF 922
L ++ + G AL+G SG+GK+TL+ +AG + T G Y PK+
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP--EVDSDTRKMFXXXXXXXXXXNPIRE 980
R G Q PH+TVY+++ + LR P E+D R++ I +
Sbjct: 75 -RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH--------IDK 125
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023
L P LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 126 LLNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385
+SGGQ++R+ LV L +DE + LD+ ++ L++ L G + +
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL-GITTVYVTH 192
Query: 386 PAPETYELFDDLILLSDGQIVYQGPRENV 414
E + D + ++ +G+I+ G + V
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 28/222 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYV-SGSITISGYPKNQETFA 923
++GVS R G + L+G SG+GKTT++ ++AG R T G V G ++ P +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPP--EVDSDTRKMFXXXXXXXXXXNPIREA 981
R G Q H+TVY+++ + + P E+D+ R++ E
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHE- 145
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-G 1040
LS Q++R+ +A L P ++ DEP + +D + + VR D G
Sbjct: 146 ---------LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG 196
Query: 1041 RTVVCTIHQPSIDIFDAFDELLLMKRGG-------EEIYVGP 1075
T V H + + D +L++ G EE+Y P
Sbjct: 197 VTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVYEKP 237
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385
+SGGQ++R+ L + L DE +D+ ++ +RQ +H G + +
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTH 204
Query: 386 PAPETYELFDDLILLSDGQIVYQGPRENVLE 416
E E+ D +++L +G + G E V E
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 26/198 (13%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYVSGSITISGYP 916
+E LKG+S + PG AL+G SG GK+T++ D L G ++ GS + P
Sbjct: 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI---FIDGSEIKTLNP 1148
Query: 917 KNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXN 976
+ T ++I+ ++ + ++ E+++Y L P S T N
Sbjct: 1149 --EHTRSQIAIVSQEPTLFD--CSIAENIIYG----LDP--SSVTMAQVEEAARLANIHN 1198
Query: 977 PIREALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
I E G G LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1199 FIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQE 1258
Query: 1032 TVRNTVDTGRTVVCTIHQ 1049
+ + GRT + H+
Sbjct: 1259 AL-DRAREGRTCIVIAHR 1275
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 27/224 (12%)
Query: 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK-- 917
PD + L+G++ G AL+G SG GK+T++ +L + + G ITI G
Sbjct: 429 PD--VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGVDVRD 484
Query: 918 -NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXN 976
N E F R + + + T+ E++ + TR+
Sbjct: 485 INLE-FLRKNVAVVSQEPALFNCTIEENISLGK--------EGITREEMVAACKMANAEK 535
Query: 977 PIR------EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1030
I+ LVG G LS Q++R+ IA LV NP I+ +DE TS LDA + IV
Sbjct: 536 FIKTLPNGYNTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQ 594
Query: 1031 RTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074
+ + + GRT + H+ S I +A +L++ + G+ + VG
Sbjct: 595 QAL-DKAAKGRTTIIIAHRLST-IRNA--DLIISCKNGQVVEVG 634
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 315 DTMVGDEMLRG--ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSI 372
+T+VGD RG +SGGQ++R+ LV + L +DE ++ LD+ + + +L ++
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA 601
Query: 373 HILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVL 415
G I ++ T D +I +GQ+V G ++
Sbjct: 602 ---KGRTTI-IIAHRLSTIRNADLIISCKNGQVVEVGDHRALM 640
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 315 DTMVGDEMLRG--ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSI 372
+T VGD RG +SGGQ++R+ LV + L +DE ++ LD+ + + +L ++
Sbjct: 1208 ETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA- 1263
Query: 373 HILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVL 415
G I ++ T D + ++S+G I+ +G ++
Sbjct: 1264 --REGRTCI-VIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLM 1303
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 13/181 (7%)
Query: 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET----FARISGYCEQT 932
G +TAL+G SG+GK+T++ +L + SG+I++ G+ Q ++I ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 933 DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSG-- 990
+ S ++ E++ Y A P V ++ + + + G G
Sbjct: 428 ILFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483
Query: 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1050
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H+
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRL 542
Query: 1051 S 1051
S
Sbjct: 543 S 543
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI 374
+T+VG++ + +SGGQ++R+ L+ + L +DE ++ LD+ Y + +L + +
Sbjct: 474 NTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR---L 529
Query: 375 LNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVL 415
++G V+ ++ T + + + +L G+I G E +L
Sbjct: 530 MDGRTVL-VIAHRLSTIKNANMVAVLDQGKITEYGKHEELL 569
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 13/181 (7%)
Query: 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET----FARISGYCEQT 932
G +TAL+G SG+GK+T++ +L + SG+I++ G+ Q ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 933 DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSG-- 990
+ S ++ E++ Y A P V ++ + + + G G
Sbjct: 459 ILFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 514
Query: 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1050
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHL 573
Query: 1051 S 1051
S
Sbjct: 574 S 574
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI 374
+T+VG++ + +SGGQ++R+ L+ + L +DE ++ LD+ Y + +L + +
Sbjct: 505 NTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR---L 560
Query: 375 LNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVL 415
++G V+ + T + + + +L G+I G E +L
Sbjct: 561 MDGRTVLVIAHHL-STIKNANMVAVLDQGKITEYGKHEELL 600
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 22/210 (10%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN------QE 920
LKG++ + G +TA++G +G GK+TL G SG I P + +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS--SGRILFDNKPIDYSRKGIMK 81
Query: 921 TFARISGYCEQTDIHSPHVTVYESLVYSAW-LRLPPEVDSDTRKMFXXXXXXXXXXNPIR 979
I + D +VY+ + + A ++LP + + RK
Sbjct: 82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLP---EDEIRKRVDNALKRTGI----- 133
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVD 1038
E L P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V +
Sbjct: 134 EHLKDKP-THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 1039 TGRTVVCTIHQPSIDIFDAF-DELLLMKRG 1067
G T++ H IDI + D + +MK G
Sbjct: 193 LGITIIIATH--DIDIVPLYCDNVFVMKEG 220
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 301 TDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
D LK G+E + D+ +S GQ+KR+ +LV + L +DE + GLD
Sbjct: 124 VDNALKRTGIE-----HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 361 TYQIVNSLRQSIHILNGTAVISLLQPAPETYEL------FDDLILLSDGQIVYQGPRENV 414
+I+ L + L T +I+ T+++ D++ ++ +G+++ QG + V
Sbjct: 179 VSEIMKLLVEMQKELGITIIIA-------THDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Query: 415 L---EFFERMGFKCPERKGVADFLQE 437
E ++ + P + + L+E
Sbjct: 232 FAEKEVIRKVNLRLPRIGHLMEILKE 257
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 17/212 (8%)
Query: 851 PQEMKAQGIPDDRLEF---------LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 901
P E+K I D + F LK ++ + G A +G+SG GK+TL++++ +
Sbjct: 332 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--R 389
Query: 902 TGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDT 961
SG I I G+ N + F S + + ++ +++ + L P D +
Sbjct: 390 FYDVTSGQILIDGH--NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV 447
Query: 962 RKMFXXXXXXXXXXNPIR--EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1019
+ N + + VG GV LS Q++RL+IA + NP I+ +DE TS
Sbjct: 448 VEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATS 506
Query: 1020 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1051
LD + +I+ + + + RT + H+ S
Sbjct: 507 ALDLESESIIQEAL-DVLSKDRTTLIVAHRLS 537
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 307 ILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVN 366
I+ L DT VG+ ++ +SGGQ++RL+ + + L +DE ++ LD + +
Sbjct: 460 IMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESE----S 514
Query: 367 SLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVL 415
+++++ +L+ ++ T D ++++ +G IV G ++
Sbjct: 515 IIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YVSGSITISGYPKN 918
+++ + GVS + G AL+G SG GKTT + +LAG + T G Y + PK
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPI 978
+E G Q PH+TV+E++ + R + + + R + I
Sbjct: 75 REV-----GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL------I 123
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1037
L P + LS Q++R+ +A LV P ++ DEP S LDA I+ +++
Sbjct: 124 DNLLDRKP--TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181
Query: 1038 DTGRTVVCTIH 1048
+ G T V H
Sbjct: 182 ELGITSVYVTH 192
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 35/217 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY----------- 915
++ +S + G L+G SG GKTT + ++AG + G I I
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS--RGQIYIGDKLVADPEKGIFV 76
Query: 916 -PKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP--EVDSDTRKMFXXXXXXX 972
PK+++ Y PH+TVY+++ + LR P E+D R++
Sbjct: 77 PPKDRDIAMVFQSYA-----LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE 131
Query: 973 XXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1032
RE LS QR+R+ + +V P + MDEP S LDA+ + MR
Sbjct: 132 LLNRKPRE----------LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRA 180
Query: 1033 VRNTVDT--GRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ G T + H ++ D + +M RG
Sbjct: 181 ELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAVMNRG 216
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
+K + QE + V ++LGL T + + R +SGGQR+R+ G +V +
Sbjct: 106 LKLRKVPRQEIDQRVREVAELLGL-----TELLNRKPRELSGGQRQRVALGRAIVRKPQV 160
Query: 347 LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406
MDE + LD+ ++ L++ L G I + E + D + +++ G +
Sbjct: 161 FLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ 219
Query: 407 YQGPRENV 414
G + V
Sbjct: 220 QVGSPDEV 227
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 15/232 (6%)
Query: 868 KGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFA-RIS 926
K ++ G +G SG GK+TL+ ++AG +T SG + I N A R
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGV 77
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLP 986
G Q+ PH++V E++ + L +++ + L P
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLA------GAKKEVINQRVNQVAEVLQLAHLLDRKP 131
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVV 1044
LS QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++
Sbjct: 132 --KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMI 188
Query: 1045 CTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKI 1096
H ++ D+++++ G PL + ++ G G PK+
Sbjct: 189 YVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 292 LEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDE 351
L G +K V+ V ++ EV + D + +SGGQR+R+ G LV +DE
Sbjct: 102 LAGAKKEVINQRVNQVA--EVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 352 ISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
+ LD++ Q+ + + +H G +I + E L D +++L G++ G
Sbjct: 160 PLSNLDAALRVQMRIEISR-LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 15/232 (6%)
Query: 868 KGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFA-RIS 926
K ++ G +G SG GK+TL+ ++AG +T SG + I N A R
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGV 77
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLP 986
G Q+ PH++V E++ + L +++ + L P
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLA------GAKKEVINQRVNQVAEVLQLAHLLDRKP 131
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVV 1044
LS QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++
Sbjct: 132 --KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMI 188
Query: 1045 CTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKI 1096
H ++ D+++++ G PL + ++ G G PK+
Sbjct: 189 YVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 292 LEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDE 351
L G +K V+ V ++ EV + D + +SGGQR+R+ G LV +DE
Sbjct: 102 LAGAKKEVINQRVNQVA--EVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 352 ISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
+ LD++ Q+ + + +H G +I + E L D +++L G++ G
Sbjct: 160 PLSNLDAALRVQMRIEISR-LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 15/232 (6%)
Query: 868 KGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFA-RIS 926
K ++ G +G SG GK+TL+ ++AG +T SG + I N A R
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGV 77
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLP 986
G Q+ PH++V E++ + L +++ + L P
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLA------GAKKEVINQRVNQVAEVLQLAHLLDRKP 131
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVV 1044
LS QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++
Sbjct: 132 --KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMI 188
Query: 1045 CTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKI 1096
H ++ D+++++ G PL + ++ G G PK+
Sbjct: 189 YVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 292 LEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDE 351
L G +K V+ V ++ EV + D + +SGGQR+R+ G LV +D+
Sbjct: 102 LAGAKKEVINQRVNQVA--EVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQ 159
Query: 352 ISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
+ LD++ Q+ + + +H G +I + E L D +++L G++ G
Sbjct: 160 PLSNLDAALRVQMRIEISR-LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 27/170 (15%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YVSGSITISGY------P 916
+K +S + G L+G SG GKTT + +AG T G Y+ ++ P
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 917 KNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP--EVDSDTRKMFXXXXXXXXX 974
K ++ Y PH TVY+++ + LR P E+D R++
Sbjct: 82 KERDVAXVFQSYALY-----PHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELL 136
Query: 975 XNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
RE LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 137 NRKPRE----------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 17/192 (8%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG----YPKNQE 920
E LKG+S + + G +++G SG+GK+TL+ +L G + + G Y +E
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKE 75
Query: 921 TFA---RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNP 977
R G+ Q P +T E+++ P+ ++ R +
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELG------ 129
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
+ + L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 130 LGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 1038 DTGRTVVCTIHQ 1049
+ G ++V H+
Sbjct: 188 EGGTSIVMVTHE 199
Score = 38.5 bits (88), Expect = 0.025, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG---ISGGQRKRLTTGEMLV 341
L M E +E+ +Y+L LGL GD++ R +SGG+++R+ L
Sbjct: 108 LKMGKPKKEAKERG---EYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALA 156
Query: 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401
LF DE + LDS+ T ++++ + I G I ++ E EL + +
Sbjct: 157 NEPILLFADEPTGNLDSANTKRVMDIF---LKINEGGTSIVMVTHERELAELTHRTLEMK 213
Query: 402 DGQIV 406
DG++V
Sbjct: 214 DGKVV 218
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 10/195 (5%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYV-SGSITISGYPKNQETFA 923
LK V+ + G ++MG SG+GK+T+++++ + T G V +I + ++ T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 924 RIS--GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREA 981
R G+ Q P +T E++ + + + R+ E
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL----EE 136
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1040
+ LS Q++R+ IA L NP II D+PT LD++ +M+ ++ + G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 1041 RTVVCTIHQPSIDIF 1055
+TVV H ++ F
Sbjct: 197 KTVVVVTHDINVARF 211
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 14/182 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYVSGSITISGYPKNQETFA 923
+KG+ G + L+G +GAGKTT + +AG + G + I+ P +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPE-VDSDTRKMFXXXXXXXXXXNPIREAL 982
I+ E I P +TVYE+L A+ R E + D +F ++E L
Sbjct: 82 GIALVPEGRRIF-PELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPR-------LKERL 133
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1042
L G LS +++ L I L + P ++ DEP+ GL + V ++ G T
Sbjct: 134 KQLGGT--LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTT 191
Query: 1043 VV 1044
++
Sbjct: 192 IL 193
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 10/195 (5%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYVS-GSITISGYPKNQETFA 923
LK V+ + G ++MG SG+GK+T+++++ + T G V +I + ++ T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 924 RIS--GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREA 981
R G+ Q P +T E++ + + + R+ E
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL----EE 136
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1040
+ LS Q++R+ IA L NP II D+PT LD++ +M+ ++ + G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 1041 RTVVCTIHQPSIDIF 1055
+TVV H ++ F
Sbjct: 197 KTVVVVTHDINVARF 211
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI 374
DT+VG++ ++ +SGG+R+R+ L+ + + DE ++ LDS T Y ++++
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL----FQKAVED 200
Query: 375 LNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEF 417
L + ++ T + +ILL+ G+IV +G +++L+
Sbjct: 201 LRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
LK ++ G AL+G +G+GK+T+ +L G G ++ Y N+ +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKY--NRNSIRS 93
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIR-EALV 983
I G Q I Y +++Y EV T+ P + + +V
Sbjct: 94 IIGIVPQDTILFNETIKY-NILYGKLDATDEEVIKATKSAQLYDFIEAL---PKKWDTIV 149
Query: 984 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1043
G G+ LS +R+R+ IA L+ +P I+ DE TS LD++ + + V + + RT+
Sbjct: 150 GNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTL 207
Query: 1044 VCTIHQPSIDIFDAFDELLLMKRG 1067
+ H+ S + + ++L+ +G
Sbjct: 208 IIIAHRLS--TISSAESIILLNKG 229
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 41/219 (18%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG---YPKNQETFA 923
L +S + PG + ++G SG GKTTL+ LAG + SG I++SG + KN
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLPV 77
Query: 924 RIS--GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREA 981
R GY Q + PH+TVY ++ Y L + R+ EA
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAY--GLGNGKGRTAQERQRI--------------EA 121
Query: 982 LVGLPGVSGLSTEQRKRLT--------IAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1033
++ L G+S L+ L+ +A L +P +I +DEP S LD + + R +
Sbjct: 122 MLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQI 177
Query: 1034 RNTV-----DTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
R + G++ V H + D + +MK+G
Sbjct: 178 REDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQG 215
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 32/229 (13%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET 921
D E L+ VS PG AL+G SGAGK+T++ +L + SG I I G +Q T
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVT 122
Query: 922 FARISGYCE--QTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIR 979
A + + D + T+ +++ Y EV++ + I
Sbjct: 123 QASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAA------------GIH 170
Query: 980 EALVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1030
+A++ P G G LS +++R+ IA ++ P II +DE TS LD +
Sbjct: 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQ 230
Query: 1031 RTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRH 1079
++ V RT + H+ S + +A D++L++K G + GRH
Sbjct: 231 ASLAK-VCANRTTIVVAHRLST-VVNA-DQILVIKDG----CIVERGRH 272
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 316 TMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHIL 375
T VG+ L+ +SGG+++R+ ++ + +DE ++ LD+S I SL +
Sbjct: 182 TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV--CA 238
Query: 376 NGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVL 415
N T ++ + + T D ++++ DG IV +G E +L
Sbjct: 239 NRTTIVVAHRLS--TVVNADQILVIKDGCIVERGRHEALL 276
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 22/192 (11%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG---YPKNQET 921
E LKG+S G + L+G +GAGKTT + +++ SG +T+ G + E
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGIVTVFGKNVVEEPHEV 86
Query: 922 FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP----EVDSDTRKMFXXXXXXXXXXNP 977
IS E+ Y ++ +LR S+ +M
Sbjct: 87 RKLISYLPEEAG-------AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK 139
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
I++ VS S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 140 IKDR------VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 1038 DTGRTVVCTIHQ 1049
G T++ + H
Sbjct: 194 QEGLTILVSSHN 205
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPA 387
G RK L ++V P R +DE ++GLD ++ L+Q+ G ++
Sbjct: 150 GMVRKLLIARALMVNP-RLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNM 206
Query: 388 PETYELFDDLILLSDGQIVYQGPRE---------NVLEFFERMGFKCPE 427
E L D + L+ +G IV G E N+ E FE + KC E
Sbjct: 207 LEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEV-VKCSE 254
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 23/226 (10%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L VS + G AL+G SG+GK+T+ ++ + SGSI + G+ +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 927 GY--CEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVG 984
+ ++H + T+ ++ Y+A TR+ I G
Sbjct: 417 RHFALVSQNVHLFNDTIANNIAYAAE-------GEYTREQIEQAARQAHAMEFIENMPQG 469
Query: 985 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
L V G LS QR+R+ IA L+ + ++ +DE TS LD + + + + +
Sbjct: 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQK 528
Query: 1040 GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIK 1085
+TV+ H+ S + DE+L++ G EI GRH L +
Sbjct: 529 NKTVLVIAHRLS--TIEQADEILVVDEG--EII--ERGRHADLLAQ 568
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 41/208 (19%)
Query: 211 SGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQE 267
SG + +GH + ++ +R A +SQN +H+ T+ +A++A +G R ++ Q
Sbjct: 397 SGSICLDGHDVRDYKLTNLRRHFALVSQN-VHLFNDTIANNIAYAA--EGEYTREQIEQA 453
Query: 268 LSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327
+ I+ P GL DT++G E +S
Sbjct: 454 ARQAHAMEFIENMPQ--------------------------GL----DTVIG-ENGTSLS 482
Query: 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPA 387
GGQR+R+ L+ A L +DE ++ LD+ + I +L + L + ++
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE----LQKNKTVLVIAHR 538
Query: 388 PETYELFDDLILLSDGQIVYQGPRENVL 415
T E D+++++ +G+I+ +G ++L
Sbjct: 539 LSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 9/203 (4%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L+ ++ G AL+G SG+GK+T+ ++ + G I + G+ + T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLR 416
Query: 927 GYCE--QTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVG 984
++H + TV ++ Y+ + E + +M N + + ++G
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGL-DTVIG 475
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1044
GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + + RT +
Sbjct: 476 ENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSL 533
Query: 1045 CTIHQPSIDIFDAFDELLLMKRG 1067
H+ S + DE+++++ G
Sbjct: 534 VIAHRLS--TIEKADEIVVVEDG 554
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 41/208 (19%)
Query: 212 GRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQEL 268
G + +GH + E+ + A +SQN +H+ TV +A+ AR + E ++E
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQN-VHLFNDTVANNIAY-ARTEQYS--REQIEEA 453
Query: 269 SRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328
+R A +D I K ++ DT++G+ + +SG
Sbjct: 454 ARMAYA--------MDFINK---------------------MDNGLDTVIGENGVL-LSG 483
Query: 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP 388
GQR+R+ L+ + L +DE ++ LD+ + I +L + N T+++ +
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV--IAHRL 539
Query: 389 ETYELFDDLILLSDGQIVYQGPRENVLE 416
T E D+++++ DG IV +G ++LE
Sbjct: 540 STIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 9/210 (4%)
Query: 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ 919
P + L+ ++ G AL+G SG+GK+T+ ++ + G I + G+ +
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLRE 409
Query: 920 ETFARISGYCE--QTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNP 977
T A + ++H + TV ++ Y+ E + +M N
Sbjct: 410 YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNG 469
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
+ + ++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 470 L-DTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DEL 526
Query: 1038 DTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
RT + H+ S + DE+++++ G
Sbjct: 527 QKNRTSLVIAHRLS--TIEQADEIVVVEDG 554
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 41/207 (19%)
Query: 212 GRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQEL 268
G + +GH + E+ + A +SQN +H+ TV +A+ AR + E
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQN-VHLFNDTVANNIAY-ARTE----------EY 445
Query: 269 SRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328
SR + + +D I K ++ DT++G+ + +SG
Sbjct: 446 SREQIEEAARMAYAMDFINK---------------------MDNGLDTIIGENGVL-LSG 483
Query: 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP 388
GQR+R+ L+ + L +DE ++ LD+ + I +L + N T+++ +
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV--IAHRL 539
Query: 389 ETYELFDDLILLSDGQIVYQGPRENVL 415
T E D+++++ DG IV +G +L
Sbjct: 540 STIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 82/197 (41%), Gaps = 15/197 (7%)
Query: 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYVS--GSITISGYPKNQ 919
L+G+S PG + A+MG +G+GK+TL LAGR+ TGG V G ++ P+++
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 920 ETFARISGYCEQTDIHSPHVT----VYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXX 975
+ Q + P V+ + +L R +D R F
Sbjct: 76 AGEGIFMAF--QYPVEIPGVSNQFFLQTALNAVRSYRGQETLD---RFDFQDLMEEKIAL 130
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
+ E L+ G S ++KR I V P + +DE SGLD A +V V +
Sbjct: 131 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNS 190
Query: 1036 TVDTGRTVVCTIHQPSI 1052
D R+ + H I
Sbjct: 191 LRDGKRSFIIVTHYQRI 207
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 17/219 (7%)
Query: 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP---- 916
D + LK ++ +PG AL+G +G+GKTT++++L + G I + G
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKI 422
Query: 917 KNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXN 976
K + I + T + S TV E+L Y P D + ++ +
Sbjct: 423 KRSSLRSSIGIVLQDTILFS--TTVKENLKYGN----PGATDEEIKEAAKLTHSDHFIKH 476
Query: 977 -PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
P V LS QR+ L I +ANP I+ +DE TS +D + + +
Sbjct: 477 LPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536
Query: 1036 TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074
++ G+T + H+ + I +A +L+++ R GE + +G
Sbjct: 537 LME-GKTSIIIAHRLN-TIKNA--DLIIVLRDGEIVEMG 571
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385
+S GQR+ L + + L +DE ++ +D+ T I ++ + ++ G I ++
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK---LMEGKTSI-IIA 547
Query: 386 PAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGF 423
T + D +I+L DG+IV G + E ++ GF
Sbjct: 548 HRLNTIKNADLIIVLRDGEIVEMGKHD---ELIQKRGF 582
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 82/197 (41%), Gaps = 15/197 (7%)
Query: 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYVS--GSITISGYPKNQ 919
L+G+S PG + A+MG +G+GK+TL LAGR+ TGG V G ++ P+++
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 920 ETFARISGYCEQTDIHSPHVT----VYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXX 975
+ Q + P V+ + +L R +D R F
Sbjct: 95 AGEGIFMAF--QYPVEIPGVSNQFFLQTALNAVRSYRGQETLD---RFDFQDLMEEKIAL 149
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
+ E L+ G S ++KR I V P + +DE SGLD A +V V +
Sbjct: 150 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNS 209
Query: 1036 TVDTGRTVVCTIHQPSI 1052
D R+ + H I
Sbjct: 210 LRDGKRSFIIVTHYQRI 226
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYVSGSITISGYPKNQET 921
++ L VS G + ++G SGAGK+TL+ L R T GS+ + G +
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 73
Query: 922 FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREA 981
+ ++ Q + H + S + LP E+D+ + +
Sbjct: 74 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELL-------S 126
Query: 982 LVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1035
LVGL S LS Q++R+ IA L +NP ++ DE TS LD ++ +++
Sbjct: 127 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI 186
Query: 1036 TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071
G T++ H+ +D+ + + + GE I
Sbjct: 187 NRRLGLTILLITHE--MDVVKRICDCVAVISNGELI 220
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
Query: 292 LEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDE 351
L+ K+ V V ++L L D D +SGGQ++R+ L + L DE
Sbjct: 109 LDNTPKDEVKRRVTELLSLVGLGDKH--DSYPSNLSGGQKQRVAIARALASNPKVLLCDE 166
Query: 352 ISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPR 411
++ LD +TT I+ L+ I+ G ++ + + D + ++S+G+++ Q
Sbjct: 167 ATSALDPATTRSILELLK-DINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ--- 222
Query: 412 ENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWAN-KDEPYS 456
+ V E F P+ F+Q E Y + EP++
Sbjct: 223 DTVSEVFSH-----PKTPLAQKFIQSTLHLDIPEDYQERLQAEPFT 263
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 46/234 (19%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQET 921
++ L+G++ PG +TAL+G +G+GK+T+ +L + TGG + + G P
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEP----- 82
Query: 922 FARISGYCEQTDIHSPHVTV----YESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNP 977
Q D H H V E L++ R TR +
Sbjct: 83 -------LVQYDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESG 134
Query: 978 IREALVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1028
+ + G P G +G LS QR+ + +A L+ P ++ +D+ TS LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLR 194
Query: 1029 VMRTVRNTVD-TGRTVVCTIHQPSI-------------DIFDAFDELLLMKRGG 1068
V R + + + RTV+ HQ S+ + + L LM+RGG
Sbjct: 195 VQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI 374
DT VG E +SGGQR+ + L+ R L +D+ ++ LD+ ++ L +S
Sbjct: 147 DTEVG-ETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEW 205
Query: 375 LNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMG 422
+ T ++ Q + E ++ L +G + QG L+ ER G
Sbjct: 206 ASRTVLLITHQLS--LAERAHHILFLKEGSVCEQGTH---LQLMERGG 248
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/214 (21%), Positives = 87/214 (40%), Gaps = 9/214 (4%)
Query: 842 DDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAG 899
DD ++ + + K ++ L VS G + ++G SGAGK+TL+ L
Sbjct: 19 DDDKHXIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78
Query: 900 RKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDS 959
R T GS+ + G + + ++ Q H + S + LP E+D+
Sbjct: 79 RPT----EGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDN 134
Query: 960 DTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1019
+ + + P S LS Q++R+ IA L +NP ++ D+ TS
Sbjct: 135 TPKDEVKRRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATS 192
Query: 1020 GLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 1052
LD ++ +++ G T++ H+ +
Sbjct: 193 ALDPATTRSILELLKDINRRLGLTILLITHEXDV 226
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 22/214 (10%)
Query: 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDY 303
T+ E+ AR Q +G ++ LS R N+ ++D K+ V
Sbjct: 94 TLSESELTKARRQ-IGXIFQHFNLLSSRTVFGNVALPLELD---------NTPKDEVKRR 143
Query: 304 VLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQ 363
V ++L L D D +SGGQ++R+ L + L D+ ++ LD +TT
Sbjct: 144 VTELLSLVGLGDKH--DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201
Query: 364 IVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGF 423
I+ L+ I+ G ++ + + D + ++S+G+++ Q + V E F
Sbjct: 202 ILELLK-DINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQ---DTVSEVFSH--- 254
Query: 424 KCPERKGVADFLQEVTSRKDQEQYWAN-KDEPYS 456
P+ F+Q E Y + EP++
Sbjct: 255 --PKTPLAQKFIQSTLHLDIPEDYQERLQAEPFT 286
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYVSGSITISGYPKNQET 921
++ L VS G + ++G SGAGK+TL+ L R T GS+ + G +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 96
Query: 922 FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREA 981
+ ++ Q + H + S + LP E+D+ + +
Sbjct: 97 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELL-------S 149
Query: 982 LVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1035
LVGL S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++
Sbjct: 150 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
Query: 1036 TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071
G T++ H+ +D+ + + + GE I
Sbjct: 210 NRRLGLTILLITHE--MDVVKRICDCVAVISNGELI 243
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
Query: 292 LEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDE 351
L+ K+ V V ++L L D D +SGGQ++R+ L + L D+
Sbjct: 132 LDNTPKDEVKRRVTELLSLVGLGDKH--DSYPSNLSGGQKQRVAIARALASNPKVLLCDQ 189
Query: 352 ISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPR 411
++ LD +TT I+ L+ I+ G ++ + + D + ++S+G+++ Q
Sbjct: 190 ATSALDPATTRSILELLK-DINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ--- 245
Query: 412 ENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWAN-KDEPYS 456
+ V E F P+ F+Q E Y + EP++
Sbjct: 246 DTVSEVFSH-----PKTPLAQKFIQSTLHLDIPEDYQERLQAEPFT 286
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 99/255 (38%), Gaps = 39/255 (15%)
Query: 834 FEPHSITFDDIRYALDMPQEMKAQ--GIPDDRLEF-LKGVSGAFRPGVLTALMGVSGAGK 890
F P+ I F + +D+ +E + + D F L+ G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 891 TTLMDVLAG--RKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYS 948
TT + +LAG T G V +T++ P Q A G TVYE L
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYELL--- 438
Query: 949 AWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVAN 1008
++DS P+ + V LS + +R+ IA L+ +
Sbjct: 439 ------SKIDSSK---LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD 489
Query: 1009 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068
I +DEP++ LD V R +R+ ++ + + I D L+
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI------ 543
Query: 1069 EEIYVGPLGRHCSQL 1083
++ G GRH L
Sbjct: 544 --VFEGEPGRHGRAL 556
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 14/184 (7%)
Query: 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSIT----ISGYPKN--QETFARISGY 928
+ G++ ++G +G GKTT + +LAG+ + + I + N Q F R+
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174
Query: 929 CEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGV 988
+ + +V + V L +VD + F N + L
Sbjct: 175 EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK--FEEVVKELELENVLDREL------ 226
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+ H
Sbjct: 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286
Query: 1049 QPSI 1052
++
Sbjct: 287 DLAV 290
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1049
LS Q++R+ IA L NP II DEPT LD++ + + ++ + G+TVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHD 205
Query: 1050 PSIDIFDAFDELLLMKRGGE 1069
++ F E ++ + GE
Sbjct: 206 INV---ARFGERIIYLKDGE 222
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 71/172 (41%), Gaps = 7/172 (4%)
Query: 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG---YPKNQETF 922
LKGV+ G + ALMG +GAGK+TL +LAG G I + G + +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 923 ARISGYCE-QTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREA 981
AR + Q + P VT+ L + +L EV F E+
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALELLDWDES 134
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1033
+ G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 135 YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV 186
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQI---VNSLR----QSIHILNG 377
G SGG++KR ++LV +DE +GLD + VN++R ++ I +
Sbjct: 143 GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202
Query: 378 TAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERK 429
+++ +QP D + ++ DG++V G E LE E G++ + K
Sbjct: 203 QRILNYIQP--------DKVHVMMDGRVVATGGPELALE-LEAKGYEWLKEK 245
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 99/255 (38%), Gaps = 39/255 (15%)
Query: 834 FEPHSITFDDIRYALDMPQEMKAQ--GIPDDRLEF-LKGVSGAFRPGVLTALMGVSGAGK 890
F P+ I F + +D+ +E + + D F L+ G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 891 TTLMDVLAG--RKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYS 948
TT + +LAG T G V +T++ P Q A G TVYE L
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYELL--- 424
Query: 949 AWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVAN 1008
++DS P+ + V LS + +R+ IA L+ +
Sbjct: 425 ------SKIDSSK---LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD 475
Query: 1009 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068
I +DEP++ LD V R +R+ ++ + + I D L+
Sbjct: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI------ 529
Query: 1069 EEIYVGPLGRHCSQL 1083
++ G GRH L
Sbjct: 530 --VFEGEPGRHGRAL 542
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 14/184 (7%)
Query: 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSIT----ISGYPKN--QETFARISGY 928
+ G++ ++G +G GKTT + +LAG+ + + I + N Q F R+
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 160
Query: 929 CEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGV 988
+ + +V + V L +VD + F N + L
Sbjct: 161 EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK--FEEVVKELELENVLDREL------ 212
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+ H
Sbjct: 213 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 272
Query: 1049 QPSI 1052
++
Sbjct: 273 DLAV 276
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1050
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV+ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 1051 SIDIFDAFDELLLMKRG 1067
+ + D ++++++G
Sbjct: 201 ET-VINHVDRVVVLEKG 216
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385
+SGG+++R+ ++V L +DE GLD ++ + + + G VI +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 198
Query: 386 PAPETYELFDDLILLSDGQIVYQGPRENVLEFFER 420
D +++L G+ V+ G R +EF E+
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTR---MEFLEK 230
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 31/216 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
L+G++ RPG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 33 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG----GQLLLDGKPLPQYEHRY 88
Query: 925 ISGYCEQTDIHSPHV---TVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREA 981
+ P V ++ E++ Y T+K +
Sbjct: 89 LHRQVAAVG-QEPQVFGRSLQENIAYGL-----------TQKPTMEEITAAAVKSGAHSF 136
Query: 982 LVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1032
+ GLP S LS QR+ + +A L+ P ++ +D+ TS LDA + V +
Sbjct: 137 ISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQL 196
Query: 1033 VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068
+ + + V I Q + + + D +L ++ G
Sbjct: 197 LYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
Score = 37.4 bits (85), Expect = 0.054, Method: Composition-based stats.
Identities = 61/275 (22%), Positives = 104/275 (37%), Gaps = 50/275 (18%)
Query: 150 LEGFLNYLHV---LPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSXXXXXXXXXXXXXXX 206
LEG + + V P+R L +L ++ ++P +T L+GP S
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 69
Query: 207 XXXFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQ 266
G++ +G + PQ Y+ + + VG +V
Sbjct: 70 T---GGQLLLDGKPL----PQYEHRYLHR------------------QVAAVGQEPQVFG 104
Query: 267 ELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326
+ A + P ++ I AA G I GL DT V DE +
Sbjct: 105 RSLQENIAYGLTQKPTMEEITAAAVKSGAHSF--------ISGLPQGYDTEV-DEAGSQL 155
Query: 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSL-----RQSIHILNGTAVI 381
SGGQR+ + L+ L +D+ ++ LD+++ Q+ L R S +L T +
Sbjct: 156 SGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL 215
Query: 382 SLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416
SL++ A D ++ L G I G + ++E
Sbjct: 216 SLVEQA-------DHILFLEGGAIREGGTHQQLME 243
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 88/232 (37%), Gaps = 40/232 (17%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L GVS + G +T ++G +G+GK+TL++V+ G G + + A +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 927 GYCEQTDIHSPH----VTVYE---------------SLVYSAWLRLPPEVDSDTRKMFXX 967
Y +P +TV E SL Y W+ P+ + K F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI---PKEEEMVEKAFKI 137
Query: 968 XXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
R+A LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 138 LEFLKLSHLYDRKA-------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 1028 IVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM--------KRGGEEI 1071
+ V G T + H+ I + + D L +M RG EEI
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEEEI 241
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 304 VLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQ 363
+L+ L L D G+ +SGGQ K + G L+ + + MDE G+ +
Sbjct: 137 ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 364 IVNSLRQSIHIL----NGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRE 412
I N H+L G + + D L ++ +GQI+ +G E
Sbjct: 192 IFN------HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1050
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV+ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 1051 SIDIFDAFDELLLMKRG 1067
+ + D ++++++G
Sbjct: 199 ET-VINHVDRVVVLEKG 214
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385
+SGG+++R+ ++V L +DE GLD ++ + + + G VI +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 196
Query: 386 PAPETYELFDDLILLSDGQIVYQGPRENVLEFFER 420
D +++L G+ V+ G R +EF E+
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTR---MEFLEK 228
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDV---LAGRKTGGYVSGSITISGYPKNQETFA 923
L GV+ + +PG L A++G +G+GK+TLM++ L + G + + K ++
Sbjct: 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV-KLKDLRG 417
Query: 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALV 983
IS ++T + S T+ E+L W R D I + ++
Sbjct: 418 HISAVPQETVLFSG--TIKENL---KWGREDATDDE---------IVEAAKIAQIHDFII 463
Query: 984 GLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
LP G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 14/184 (7%)
Query: 875 RPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYVSGSITISGYPKN--QETFARISGY 928
+ G + ++G +G GK+T + +LAG+ G S I + N Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 929 CEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGV 988
+ + +V + V + L + D +T K+ RE +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKAD-ETGKLEEVVKALELENVLERE-------I 156
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+ H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 1049 QPSI 1052
++
Sbjct: 217 DLAV 220
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 88/232 (37%), Gaps = 40/232 (17%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L GVS + G +T ++G +G+GK+TL++V+ G G + + A +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 927 GYCEQTDIHSPH----VTVYE---------------SLVYSAWLRLPPEVDSDTRKMFXX 967
Y +P +TV E SL Y W+ P+ + K F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI---PKEEEMVEKAFKI 137
Query: 968 XXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
R+A LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 138 LEFLKLSHLYDRKA-------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 1028 IVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM--------KRGGEEI 1071
+ V G T + H+ I + + D L +M RG EEI
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEEEI 241
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 304 VLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQ 363
+L+ L L D G+ +SGGQ K + G L+ + + MDE G+ +
Sbjct: 137 ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 364 IVNSLRQSIHIL----NGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRE 412
I N H+L G + + D L ++ +GQI+ +G E
Sbjct: 192 IFN------HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 19/157 (12%)
Query: 882 LMGVSGAGKTTLMDVLAG--RKTGGYVS-GSITISGYPKNQETFARISGYCEQTDIHSPH 938
L+G +GAGK+ ++++AG + G V I+ P + R G+ Q PH
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFPH 84
Query: 939 VTVYESLVYSAWLRLPPEVDSDTRKMFXXX-XXXXXXXNPIREALVGLPGVSGLSTEQRK 997
++VY ++ Y E D R+M P R LS +R+
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGERQ 133
Query: 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
R+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385
+SGG+R+R+ LV R L +DE + +D T ++ LR + ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTH 185
Query: 386 PAPETYELFDDLILLSDGQIVYQG 409
E L D++ ++ +G+IV +G
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG 209
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 88/232 (37%), Gaps = 40/232 (17%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L GVS + G +T ++G +G+GK+TL++V+ G G + + A +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 927 GYCEQTDIHSPH----VTVYE---------------SLVYSAWLRLPPEVDSDTRKMFXX 967
Y +P +TV E SL Y W+ P+ + K F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI---PKEEEMVEKAFKI 137
Query: 968 XXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
R+A LS Q K + I L+ NP +I MD+P +G+ A
Sbjct: 138 LEFLKLSHLYDRKA-------GELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAH 190
Query: 1028 IVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM--------KRGGEEI 1071
+ V G T + H+ I + + D L +M RG EEI
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEEEI 241
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 21/167 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
LK +S G L G++GAGKTTL+++L + SG++ + G +
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGK------V 88
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIR---EALV 983
GY +T H+ + + +D F + IR L+
Sbjct: 89 GYSAET--VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLL 146
Query: 984 GLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
L G S LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 147 KLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 304 VLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQ 363
+LK++G A +G +S G+++R+ L G + L +DE + GLD
Sbjct: 145 LLKLVGXSAKAQQYIG-----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARES 199
Query: 364 IVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVL------EF 417
+++ L A I + E F ++LL DGQ + QG E++L F
Sbjct: 200 LLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENXSRF 259
Query: 418 FER 420
F++
Sbjct: 260 FQK 262
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTI 1047
+ LS QR+ + IA + + +I +DEPTS LD IV+ + + + TVV T
Sbjct: 127 TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186
Query: 1048 HQPSIDIFDAFDELLLMKR 1066
HQP+ + A LLL K+
Sbjct: 187 HQPNQVVAIANKTLLLNKQ 205
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 45/105 (42%)
Query: 282 DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
DI L+ ++ + K DY + + L+ T + +SGGQR+ + +
Sbjct: 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIA 144
Query: 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP 386
+ + +DE ++ LD + +++ L N T V + QP
Sbjct: 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L +SG R G + L+G +GAGK+TL+ AG +G GSI +G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 927 GYCEQTDIHSPHVTVYESLVYSA--WLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVG 984
+H +++ ++ ++ W L TR N + AL
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL---------LNDVAGAL-A 115
Query: 985 LPGVSGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRT 1032
L G ST QR RL V + ANP+ ++ +DEP + LD + + +
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKI 175
Query: 1033 VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074
+ G +V + H + + A LL +GG+ + G
Sbjct: 176 LSALCQQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 46/234 (19%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQET 921
++ L+G++ PG +TAL+G +G+GK+T+ +L + TGG + + G P
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEP----- 82
Query: 922 FARISGYCEQTDIHSPHVTV----YESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNP 977
Q D H H V E L++ R TR +
Sbjct: 83 -------LVQYDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESG 134
Query: 978 IREALVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1028
+ + G P G +G LS QR+ + +A L+ P ++ +D TS LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 1029 VMRTVRNTVD-TGRTVVCTIHQPSI-------------DIFDAFDELLLMKRGG 1068
V R + + + RTV+ Q S+ + + L LM+RGG
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 33.9 bits (76), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI 374
DT VG E +SGGQR+ + L+ R L +D ++ LD+ ++ L +S
Sbjct: 147 DTEVG-ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW 205
Query: 375 LNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMG 422
+ T ++ Q + E ++ L +G + QG L+ ER G
Sbjct: 206 ASRTVLLITQQLS--LAERAHHILFLKEGSVCEQGTH---LQLMERGG 248
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 38/252 (15%)
Query: 832 LPFEPHSITFDDIRYAL----------DMPQEMKAQGIPDDRLEFLKGV-SGAFRPGVLT 880
LP E I D+I++ L D+ +MK I +F V +G + G +
Sbjct: 238 LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEII 297
Query: 881 ALMGVSGAGKTTLMDVLAGRKTG--GYVSGSITISGYPKNQETFARISGYCEQTDIHSPH 938
++G +G GKTT +L G T G V+ I Y K Q F G +Q ++
Sbjct: 298 GILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGTVQQYLENASK 356
Query: 939 VTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKR 998
++L S+W F + + E+ V+ LS + ++
Sbjct: 357 ----DALSTSSW--------------FFEEVTKRLNLHRLLES-----NVNDLSGGELQK 393
Query: 999 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAF 1058
L IA L + +D+P+S LD IV + ++ V R V I + I D
Sbjct: 394 LYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKR-VTRERKAVTFIIDHDLSIHDYI 452
Query: 1059 DELLLMKRGGEE 1070
+ +++ +G E
Sbjct: 453 ADRIIVFKGEPE 464
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFD 1056
+RL +A L+ + D+P+S LD R + + +R + + V+ H + + D
Sbjct: 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKYVIVVDH--DLIVLD 201
Query: 1057 AFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWM 1106
+L+ + G +Y ++ K + G+ +GY PA M
Sbjct: 202 YLTDLIHIIYGESSVY--------GRVSKSYAARVGINNFLKGYLPAENM 243
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 41/192 (21%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY------PKNQE 920
L +S G ++G +GAGKT ++++AG SG I + G P+ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHD 73
Query: 921 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRL---PPEVDSDTRKMFXXXXXXXXXXNP 977
+ Q PH+ V ++L + ++ P V R + NP
Sbjct: 74 I-----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL---KIEHLLDRNP 125
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
+ LS +++R+ +A LV NP I+ +DEP S LD R T
Sbjct: 126 L-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQ 163
Query: 1038 DTGRTVVCTIHQ 1049
+ R ++ +H+
Sbjct: 164 ENAREMLSVLHK 175
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 44/207 (21%)
Query: 211 SGRVTYNGHGMEEFVPQRTS-AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELS 269
SGR+ +G + + P++ A++ QN M V++ L F R + + VL
Sbjct: 54 SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL---- 109
Query: 270 RREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGG 329
+ A ++K + +D +N +T +SGG
Sbjct: 110 --DTARDLKIEHLLD------------RNPLT------------------------LSGG 131
Query: 330 QRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPE 389
+++R+ LV + L +DE + LD T + +H N V+ + E
Sbjct: 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQEN-AREMLSVLHKKNKLTVLHITHDQTE 190
Query: 390 TYELFDDLILLSDGQIVYQGPRENVLE 416
+ D + ++ DG+++ G E + E
Sbjct: 191 ARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L +SG R G + L+G +GAGK+TL+ AG +G GSI +G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 927 GYCEQTDIHSPHVTVYESLVYSA--WLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVG 984
+H +++ ++ ++ W L TR N + AL
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL---------LNDVAGAL-A 115
Query: 985 LPGVSGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRT 1032
L G ST QR RL V + ANP+ ++ +DEP + LD + + +
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKI 175
Query: 1033 VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074
+ G +V + H + + A LL +GG+ + G
Sbjct: 176 LSALSQQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 46/234 (19%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQET 921
++ L+G++ PG +TAL+G +G+GK+T+ +L + TG G + + G P
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEP----- 82
Query: 922 FARISGYCEQTDIHSPHVTV----YESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNP 977
Q D H H V E L++ R TR +
Sbjct: 83 -------LVQYDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESG 134
Query: 978 IREALVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1028
+ + G P G +G L+ QR+ + +A L+ P ++ +D TS LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 1029 VMRTVRNTVD-TGRTVVCTIHQPSI-------------DIFDAFDELLLMKRGG 1068
V R + + + RTV+ Q S+ + + L LM+RGG
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 36/222 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L +SG R G + L+G +GAGK+TL+ +AG +G GSI +G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 927 GYCEQTDIHSPHVTVYESLVYSA--WLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVG 984
+H +++ ++ ++ W L TR N + AL
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL---------LNDVAGAL-A 115
Query: 985 LPGVSGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRT 1032
L G ST QR RL V + ANP+ ++ +D+P + LD + + +
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKI 175
Query: 1033 VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074
+ G +V + H + + A LL +GG+ + G
Sbjct: 176 LSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L +SG R G + L+G +GAGK+TL+ +AG +G GSI +G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 927 GYCEQTDIHSPHVTVYESLVYSA--WLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVG 984
+H +++ ++ ++ W L TR N + AL
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL---------LNDVAGAL-A 115
Query: 985 LPGVSGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRT 1032
L G ST QR RL V + ANP+ ++ +D+P LD + + +
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKI 175
Query: 1033 VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074
+ G +V + H + + A LL +GG+ + G
Sbjct: 176 LSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMD-- 895
SI IR ++D +++ G R L+G+ +F GVLT++ GVSG+GK+TL++
Sbjct: 632 SIEIPAIRRSVDPRRQLTVVGA---REHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
Query: 896 ---VLAGRKTG 903
VLA R G
Sbjct: 689 LAAVLANRLNG 699
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 991 LSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1047
LS + +R+ +A EL + + +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1048 HQPSIDIFDAFD 1059
H ++D+ D
Sbjct: 924 H--NLDVIKTSD 933
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 37.7 bits (86), Expect = 0.042, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 1014 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073
MD+ G+++ A IV+ R ++G+ + IH+ +I+I A DEL ++ +
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNPK---- 158
Query: 1074 GPLGRHCSQL 1083
PL +C+QL
Sbjct: 159 -PLRDYCTQL 167
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 35/196 (17%)
Query: 842 DDIRYALDMPQEMKAQGIPDDRLEFLKGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAG- 899
D A P K QG +F+ V G F + +MG +G GKTTL+ +LAG
Sbjct: 348 DSASRAFSYPSLKKTQG------DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA 401
Query: 900 -RKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVD 958
+ G + +S P Q+ + G Q ++ + +L P+
Sbjct: 402 LKPDEGQDIPKLNVSMKP--QKIAPKFPGTVRQ---------LFFKKIRGQFLN--PQFQ 448
Query: 959 SDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1018
+D K P+R + V LS + +R+ I + L I +DEP+
Sbjct: 449 TDVVK-------------PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495
Query: 1019 SGLDARAAAIVMRTVR 1034
+ LD+ I + +R
Sbjct: 496 AYLDSEQRIICSKVIR 511
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1047
+ LS + +R I + V + DEP+S LD + + +R+ + + V+C
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278
Query: 1048 HQPSIDIFDAFDELLLMKRGGEEIY 1072
H + + D + + + G +Y
Sbjct: 279 H--DLSVLDYLSDFVCIIYGVPSVY 301
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901
RPG + L+G +G GK+T + +LAG++
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 36/246 (14%)
Query: 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETF 922
L+ +S + PG L+G +G+GK+TL+ G I I G + E +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLR--LPPEVDSDTRKMFXXXXXXXXXXNPIRE 980
+ G Q + ++S R L P ++++ +R
Sbjct: 93 RKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVG-----LRS 136
Query: 981 ALVGLPG------VSG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
+ PG V G LS ++ + +A +++ I+ +DEP++ LD I+ R
Sbjct: 137 VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR 196
Query: 1032 TVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGID 1091
T++ ++C + I+ D+ L+++ Y L + ++ G
Sbjct: 197 TLKQAFADCTVILC---EARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFI 253
Query: 1092 GVPKIK 1097
G PK+
Sbjct: 254 GSPKMN 259
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1040 GRTVVCTIHQPSIDIFDAFDELLLM-----KRGGEEIYVG 1074
G TV+ H ++D+ D ++ + RGG+ + VG
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1040 GRTVVCTIHQPSIDIFDAFDELLLM-----KRGGEEIYVG 1074
G TV+ H ++D+ D ++ + RGG+ + VG
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 983 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 537 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 1040 GRTVVCTIHQPSIDIFDAFDELLLM-----KRGGEEIYVG 1074
G TV+ H ++D+ D ++ + RGG+ + VG
Sbjct: 596 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 903
E LK +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 26 EALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 35.0 bits (79), Expect = 0.31, Method: Composition-based stats.
Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 23/212 (10%)
Query: 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETF 922
+ VS G + A++G +GAGK+TL+ +L G + + G + G N +
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH--GECHLLGQNLNSWQPKAL 83
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREAL 982
AR Q + +V E + R P D + + R+
Sbjct: 84 ARTRAVMRQYSELAFPFSVSEVIQMG---RAPYGGSQDRQALQQVMAQTDCLALAQRDYR 140
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRN- 1035
V LS +++R+ +A L P +F+DEPTS LD +R +R
Sbjct: 141 V-------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL 193
Query: 1036 TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
T V C +H ++ A D ++L+ +G
Sbjct: 194 TRQEPLAVCCVLHDLNLAALYA-DRIMLLAQG 224
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 903
E LK +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 37 EALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1052
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
+G P + LS + +R+ +A EL + + +DEPT GL ++ + VD
Sbjct: 799 LGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 1040 GRTVVCTIHQPSIDIFDAFDELL-LMKRGGEE 1070
G TV+ H ++D+ D ++ L GG+E
Sbjct: 858 GNTVIVIEH--NLDVIKNADHIIDLGPEGGKE 887
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 31/174 (17%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYVSGSITISGYPK-----NQ 919
L G++ + G L A++G G GK++L+ L K G+V+ +++ P+ N
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQND 80
Query: 920 ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIR 979
I C+ + P+ Y S++ + L E+ +
Sbjct: 81 SLRENILFGCQ---LEEPY---YRSVIQACALLPDLEILPSGDR---------------- 118
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1033
+G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 119 -TEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 991 LSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1047
LS + +R+ +A EL + ++ +DEPT+GL + R + VD G TV+
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 1048 HQPSIDIFDAFDELLLMKRGGEE 1070
H+ + + A D +L + G E
Sbjct: 791 HK--MQVVAASDWVLDIGPGAGE 811
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 324 RGISGGQRK------RLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNG 377
RG+SGG+R ++ E+ G A F+DE + LD+ +I + L++ + LN
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKE-LERLN- 335
Query: 378 TAVISLLQPAPETYELFDDLILLSDGQIVYQ 408
VI + E E FD + ++ G +V +
Sbjct: 336 -KVIVFITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 324 RGISGGQRKRLTT------GEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNG 377
RG+SGG+R ++ E+ G A F+DE + LD+ +I + L++ + LN
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKE-LERLN- 335
Query: 378 TAVISLLQPAPETYELFDDLILLSDGQIV 406
VI + E E FD + ++ G +V
Sbjct: 336 -KVIVFITHDREFSEAFDRKLRITGGVVV 363
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 24/181 (13%)
Query: 882 LMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP-KNQETFARISGYCEQTDIHSPHVT 940
++G +G+GKTTL+ ++G SG+I I+G + + R S + + VT
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYS--TNLPEAYEIGVT 89
Query: 941 VYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPI-REALVGLPGVSGLSTEQRKRL 999
V +VY L E+ R +F I R L L +G S R L
Sbjct: 90 V-NDIVY-----LYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLS--AGQSVLVRTSL 141
Query: 1000 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1059
+A + P I+ +DEP +DA ++ R ++ + G+ + H+ +D+ + +
Sbjct: 142 ALA----SQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHE--LDMLNLYK 192
Query: 1060 E 1060
E
Sbjct: 193 E 193
>pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen
pdb|3GHG|F Chain F, Crystal Structure Of Human Fibrinogen
pdb|3GHG|I Chain I, Crystal Structure Of Human Fibrinogen
pdb|3GHG|L Chain L, Crystal Structure Of Human Fibrinogen
Length = 411
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 407 YQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQE 445
Y R+N ER G CP G+ADFL ++ D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLSTYQTKVDKD 39
>pdb|2A45|I Chain I, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|L Chain L, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
Length = 45
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 407 YQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQE 445
Y R+N ER G CP G+ADFL ++ D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLSTYQTKVDKD 39
>pdb|1DEQ|C Chain C, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|F Chain F, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|P Chain P, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|S Chain S, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 411
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 407 YQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQE 445
Y R+N ER G CP G+ADFL + D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLNNYQTSVDKD 39
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 38/147 (25%)
Query: 882 LMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT- 940
+ G +G GK+TLM +A + + G+P +E + Y E DI H
Sbjct: 466 ICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR---TVYVEH-DIDGTHSDT 511
Query: 941 -----VYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQ 995
V+ES V + E D F + ++ +P +S LS
Sbjct: 512 SVLDFVFESGVGTK------EAIKDKLIEFG-----------FTDEMIAMP-ISALSGGW 553
Query: 996 RKRLTIAVELVANPSIIFMDEPTSGLD 1022
+ +L +A ++ N I+ +DEPT+ LD
Sbjct: 554 KMKLALARAVLRNADILLLDEPTNHLD 580
>pdb|1JY2|P Chain P, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
pdb|1JY2|S Chain S, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
pdb|1JY3|P Chain P, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
pdb|1JY3|S Chain S, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
Length = 48
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 407 YQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQE 445
Y R+N ER G CP G+ADFL + D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLNNYQTSVDKD 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,502,606
Number of Sequences: 62578
Number of extensions: 1705184
Number of successful extensions: 4207
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3913
Number of HSP's gapped (non-prelim): 288
length of query: 1436
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1325
effective length of database: 8,027,179
effective search space: 10636012175
effective search space used: 10636012175
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)