Query 046196
Match_columns 1436
No_of_seqs 879 out of 5901
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 16:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 5.1E-74 1.7E-78 783.6 48.6 216 836-1076 1074-1299(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 3E-68 1E-72 725.1 60.4 215 837-1076 1029-1253(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 1.1E-56 3.8E-61 564.9 34.6 201 838-1077 357-559 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 7.9E-57 2.7E-61 561.4 31.1 201 838-1077 287-489 (538)
5 2iw3_A Elongation factor 3A; a 100.0 1.1E-54 3.8E-59 561.2 41.5 184 167-415 448-634 (986)
6 3ozx_A RNAse L inhibitor; ATP 100.0 1.9E-55 6.6E-60 547.0 29.9 202 866-1090 283-486 (538)
7 3ux8_A Excinuclease ABC, A sub 100.0 8.4E-54 2.9E-58 551.6 37.1 214 167-415 31-297 (670)
8 3j16_B RLI1P; ribosome recycli 100.0 6.2E-54 2.1E-58 538.6 30.8 189 865-1078 361-556 (608)
9 3pih_A Uvrabc system protein A 100.0 9.2E-41 3.1E-45 432.3 33.2 196 866-1076 599-897 (916)
10 3tui_C Methionine import ATP-b 100.0 4.4E-41 1.5E-45 394.2 24.6 219 837-1076 23-248 (366)
11 3tui_C Methionine import ATP-b 100.0 1.9E-40 6.5E-45 388.8 28.0 207 166-415 40-252 (366)
12 3tif_A Uncharacterized ABC tra 100.0 1.9E-40 6.6E-45 371.4 25.2 219 839-1076 2-229 (235)
13 3fvq_A Fe(3+) IONS import ATP- 100.0 3.1E-40 1.1E-44 387.2 28.0 207 167-416 17-228 (359)
14 3rlf_A Maltose/maltodextrin im 100.0 4E-40 1.4E-44 388.7 27.9 207 167-416 16-223 (381)
15 2r6f_A Excinuclease ABC subuni 100.0 8.1E-40 2.8E-44 418.9 33.0 195 866-1076 639-937 (972)
16 3gfo_A Cobalt import ATP-bindi 100.0 1.5E-40 5.2E-45 379.3 23.5 215 838-1076 7-228 (275)
17 3rlf_A Maltose/maltodextrin im 100.0 1.9E-40 6.6E-45 391.3 24.9 214 838-1076 3-218 (381)
18 2pcj_A ABC transporter, lipopr 100.0 2.4E-40 8.3E-45 368.1 23.9 213 838-1076 4-223 (224)
19 2olj_A Amino acid ABC transpor 100.0 3.2E-40 1.1E-44 374.6 24.8 214 838-1076 24-243 (263)
20 3fvq_A Fe(3+) IONS import ATP- 100.0 1.3E-40 4.5E-45 390.3 22.2 214 838-1076 4-223 (359)
21 1b0u_A Histidine permease; ABC 100.0 3.8E-40 1.3E-44 374.9 23.9 214 838-1076 6-237 (262)
22 1vpl_A ABC transporter, ATP-bi 100.0 6.6E-40 2.3E-44 370.8 24.0 214 838-1076 15-230 (256)
23 3nh6_A ATP-binding cassette SU 100.0 5.5E-40 1.9E-44 379.2 23.2 208 167-416 67-277 (306)
24 1g6h_A High-affinity branched- 100.0 5.5E-40 1.9E-44 372.9 21.5 217 838-1076 7-237 (257)
25 1z47_A CYSA, putative ABC-tran 100.0 1.3E-39 4.4E-44 382.4 24.7 215 838-1076 14-230 (355)
26 3gfo_A Cobalt import ATP-bindi 100.0 7.6E-40 2.6E-44 373.5 22.1 207 167-416 21-233 (275)
27 2yyz_A Sugar ABC transporter, 100.0 3.8E-39 1.3E-43 379.4 28.5 207 167-416 16-223 (359)
28 4g1u_C Hemin import ATP-bindin 100.0 4.1E-39 1.4E-43 366.7 27.8 204 167-415 24-236 (266)
29 2vf7_A UVRA2, excinuclease ABC 100.0 5.2E-39 1.8E-43 412.9 31.8 195 866-1076 512-822 (842)
30 2olj_A Amino acid ABC transpor 100.0 5.3E-39 1.8E-43 364.5 27.9 206 167-416 37-248 (263)
31 2it1_A 362AA long hypothetical 100.0 1.6E-39 5.5E-44 383.0 24.0 213 839-1076 4-218 (362)
32 2it1_A 362AA long hypothetical 100.0 3.9E-39 1.3E-43 379.8 26.8 207 167-416 16-223 (362)
33 1z47_A CYSA, putative ABC-tran 100.0 2.5E-39 8.6E-44 379.9 25.0 207 167-416 28-235 (355)
34 2yyz_A Sugar ABC transporter, 100.0 1.3E-39 4.5E-44 383.4 22.5 213 839-1076 4-218 (359)
35 4g1u_C Hemin import ATP-bindin 100.0 1.2E-39 4.2E-44 371.0 21.5 212 838-1076 11-232 (266)
36 3tif_A Uncharacterized ABC tra 100.0 5E-39 1.7E-43 360.0 26.1 207 167-414 18-232 (235)
37 2pcj_A ABC transporter, lipopr 100.0 4.3E-39 1.5E-43 358.0 25.3 200 167-411 17-223 (224)
38 1g29_1 MALK, maltose transport 100.0 2.5E-39 8.4E-44 383.7 24.8 213 839-1076 4-224 (372)
39 1ji0_A ABC transporter; ATP bi 100.0 1.7E-39 5.8E-44 365.2 22.2 213 838-1076 6-223 (240)
40 1b0u_A Histidine permease; ABC 100.0 4.9E-39 1.7E-43 365.8 25.4 206 167-416 19-242 (262)
41 2ygr_A Uvrabc system protein A 100.0 1.7E-38 5.9E-43 408.3 33.4 195 866-1076 657-955 (993)
42 1g29_1 MALK, maltose transport 100.0 8.1E-39 2.8E-43 379.3 27.8 207 167-416 16-229 (372)
43 1v43_A Sugar-binding transport 100.0 6.4E-39 2.2E-43 379.3 26.6 207 167-416 24-231 (372)
44 1oxx_K GLCV, glucose, ABC tran 100.0 1.6E-39 5.5E-44 383.1 21.2 213 839-1076 4-225 (353)
45 1g6h_A High-affinity branched- 100.0 7.1E-39 2.4E-43 363.8 24.7 216 167-413 20-239 (257)
46 1vpl_A ABC transporter, ATP-bi 100.0 1E-38 3.5E-43 361.0 25.9 206 167-416 28-235 (256)
47 1v43_A Sugar-binding transport 100.0 2.4E-39 8.4E-44 382.8 21.5 214 838-1076 11-226 (372)
48 1oxx_K GLCV, glucose, ABC tran 100.0 7.3E-39 2.5E-43 377.5 25.5 205 169-416 20-230 (353)
49 3d31_A Sulfate/molybdate ABC t 100.0 5.8E-39 2E-43 376.8 22.7 201 169-415 15-216 (348)
50 1ji0_A ABC transporter; ATP bi 100.0 1.7E-38 5.6E-43 357.1 25.1 204 167-415 19-227 (240)
51 3d31_A Sulfate/molybdate ABC t 100.0 6.1E-39 2.1E-43 376.6 20.5 209 839-1076 2-212 (348)
52 2yz2_A Putative ABC transporte 100.0 1E-38 3.4E-43 364.3 21.2 217 839-1076 3-222 (266)
53 2onk_A Molybdate/tungstate ABC 100.0 1.1E-38 3.9E-43 357.5 21.0 208 839-1076 2-211 (240)
54 2d2e_A SUFC protein; ABC-ATPas 100.0 1.2E-38 4.3E-43 360.3 21.4 216 839-1076 4-228 (250)
55 2ihy_A ABC transporter, ATP-bi 100.0 7E-39 2.4E-43 367.0 18.5 218 837-1076 20-247 (279)
56 2onk_A Molybdate/tungstate ABC 100.0 8.5E-38 2.9E-42 350.4 23.7 202 169-416 14-216 (240)
57 2zu0_C Probable ATP-dependent 100.0 8.8E-38 3E-42 356.4 23.8 221 837-1076 19-249 (267)
58 2yz2_A Putative ABC transporte 100.0 1.5E-37 5.2E-42 354.5 24.8 205 167-416 20-227 (266)
59 2nq2_C Hypothetical ABC transp 100.0 1.8E-37 6E-42 350.9 24.2 207 838-1076 4-212 (253)
60 2qi9_C Vitamin B12 import ATP- 100.0 8.7E-38 3E-42 352.0 20.6 193 866-1076 15-217 (249)
61 3nh6_A ATP-binding cassette SU 100.0 6.4E-38 2.2E-42 362.0 18.2 212 836-1076 51-272 (306)
62 2ff7_A Alpha-hemolysin translo 100.0 1.2E-37 4.1E-42 351.2 19.8 212 837-1076 6-227 (247)
63 2ixe_A Antigen peptide transpo 100.0 1.1E-37 3.8E-42 356.1 19.2 214 838-1076 16-240 (271)
64 2ihy_A ABC transporter, ATP-bi 100.0 2.4E-37 8.1E-42 354.3 21.7 210 167-415 34-251 (279)
65 1sgw_A Putative ABC transporte 100.0 3.5E-38 1.2E-42 346.8 13.9 198 838-1065 10-207 (214)
66 2ff7_A Alpha-hemolysin translo 100.0 5.5E-37 1.9E-41 345.8 23.7 200 167-415 22-231 (247)
67 4a82_A Cystic fibrosis transme 100.0 2.8E-37 9.5E-42 390.6 21.7 208 167-416 354-564 (578)
68 2d2e_A SUFC protein; ABC-ATPas 100.0 5.2E-37 1.8E-41 347.1 20.7 205 167-413 16-230 (250)
69 3qf4_A ABC transporter, ATP-bi 100.0 5.4E-37 1.8E-41 388.0 21.8 208 167-416 356-566 (587)
70 2nq2_C Hypothetical ABC transp 100.0 4.3E-36 1.5E-40 339.5 26.8 198 167-415 18-216 (253)
71 1mv5_A LMRA, multidrug resista 100.0 2.8E-37 9.7E-42 347.9 15.8 210 839-1076 2-221 (243)
72 2zu0_C Probable ATP-dependent 100.0 2.9E-36 1E-40 343.9 23.5 220 167-423 33-260 (267)
73 1mv5_A LMRA, multidrug resista 100.0 5.9E-37 2E-41 345.3 17.3 202 167-416 15-226 (243)
74 2ixe_A Antigen peptide transpo 100.0 9.9E-37 3.4E-41 348.2 19.2 209 167-416 32-245 (271)
75 2qi9_C Vitamin B12 import ATP- 100.0 3E-36 1E-40 339.5 21.6 198 168-415 14-221 (249)
76 3qf4_B Uncharacterized ABC tra 100.0 1.7E-36 6E-41 384.5 21.2 208 167-416 368-578 (598)
77 4f4c_A Multidrug resistance pr 100.0 8.2E-37 2.8E-41 417.3 19.1 210 167-416 1092-1304(1321)
78 2pjz_A Hypothetical protein ST 100.0 6.4E-36 2.2E-40 339.2 22.3 195 167-416 18-215 (263)
79 2ghi_A Transport protein; mult 100.0 2.8E-36 9.4E-41 342.7 19.2 211 838-1076 17-237 (260)
80 2pjz_A Hypothetical protein ST 100.0 4.5E-36 1.5E-40 340.5 19.8 206 839-1076 2-210 (263)
81 3b5x_A Lipid A export ATP-bind 100.0 1.6E-35 5.5E-40 375.1 25.9 209 167-416 356-567 (582)
82 2yl4_A ATP-binding cassette SU 100.0 9.7E-36 3.3E-40 378.1 23.9 211 167-416 357-570 (595)
83 2ghi_A Transport protein; mult 100.0 8.4E-36 2.9E-40 338.7 20.7 200 167-416 33-242 (260)
84 3gd7_A Fusion complex of cysti 100.0 4.2E-36 1.5E-40 357.3 18.2 199 167-416 34-242 (390)
85 3b60_A Lipid A export ATP-bind 100.0 2.3E-35 7.7E-40 373.8 25.5 209 167-416 356-567 (582)
86 2pze_A Cystic fibrosis transme 100.0 3.4E-35 1.1E-39 327.8 20.2 196 167-415 21-217 (229)
87 1sgw_A Putative ABC transporte 100.0 8.4E-36 2.9E-40 327.9 14.9 188 168-405 23-210 (214)
88 2pze_A Cystic fibrosis transme 100.0 3.8E-35 1.3E-39 327.4 20.3 200 838-1076 6-213 (229)
89 2cbz_A Multidrug resistance-as 100.0 3.1E-35 1.1E-39 329.6 19.3 199 839-1076 4-212 (237)
90 3gd7_A Fusion complex of cysti 100.0 1.4E-35 4.9E-40 352.7 16.8 211 837-1076 18-237 (390)
91 2cbz_A Multidrug resistance-as 100.0 1.9E-35 6.5E-40 331.4 16.6 199 167-416 18-217 (237)
92 3qf4_A ABC transporter, ATP-bi 100.0 6.5E-35 2.2E-39 369.0 17.8 213 836-1076 339-561 (587)
93 2yl4_A ATP-binding cassette SU 100.0 2.9E-34 9.8E-39 364.6 23.6 216 837-1076 339-565 (595)
94 4a82_A Cystic fibrosis transme 100.0 1.3E-34 4.3E-39 366.4 19.8 213 836-1076 337-559 (578)
95 3b60_A Lipid A export ATP-bind 100.0 1.9E-34 6.5E-39 365.3 20.5 213 837-1076 340-562 (582)
96 3b5x_A Lipid A export ATP-bind 100.0 2.9E-34 1E-38 363.6 20.8 213 837-1076 340-562 (582)
97 3qf4_B Uncharacterized ABC tra 100.0 6.8E-34 2.3E-38 360.8 21.5 211 837-1076 353-573 (598)
98 2bbs_A Cystic fibrosis transme 100.0 3.2E-33 1.1E-37 321.3 18.7 195 838-1076 40-242 (290)
99 2bbs_A Cystic fibrosis transme 100.0 5.8E-33 2E-37 319.2 18.7 195 168-416 52-247 (290)
100 3g5u_A MCG1178, multidrug resi 100.0 3.8E-33 1.3E-37 380.3 19.6 210 167-416 1046-1258(1284)
101 3bk7_A ABC transporter ATP-bin 100.0 1.2E-29 4.1E-34 319.4 20.5 191 169-416 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-29 4.5E-34 316.1 18.9 191 169-416 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 100.0 3E-29 1E-33 311.9 20.1 192 169-415 283-476 (538)
104 3j16_B RLI1P; ribosome recycli 100.0 6.1E-29 2.1E-33 312.2 20.2 193 167-416 360-559 (608)
105 1tf7_A KAIC; homohexamer, hexa 100.0 2.4E-31 8.1E-36 333.1 -1.7 155 871-1067 275-443 (525)
106 2iw3_A Elongation factor 3A; a 100.0 5.5E-28 1.9E-32 312.9 19.9 193 838-1076 435-630 (986)
107 3ux8_A Excinuclease ABC, A sub 100.0 2.7E-28 9.1E-33 314.2 16.1 204 864-1076 31-293 (670)
108 2r6f_A Excinuclease ABC subuni 99.9 1.3E-24 4.4E-29 278.9 17.7 107 301-415 825-941 (972)
109 3pih_A Uvrabc system protein A 99.9 4.8E-24 1.6E-28 276.5 23.1 110 300-416 784-902 (916)
110 2ygr_A Uvrabc system protein A 99.9 4.8E-24 1.6E-28 274.7 17.8 108 301-416 843-960 (993)
111 2vf7_A UVRA2, excinuclease ABC 99.9 4.2E-24 1.4E-28 274.9 16.9 108 300-415 709-826 (842)
112 2npi_A Protein CLP1; CLP1-PCF1 99.9 8.2E-26 2.8E-30 275.5 -1.1 184 171-415 129-337 (460)
113 2npi_A Protein CLP1; CLP1-PCF1 99.9 5.1E-26 1.7E-30 277.3 -6.6 197 867-1089 128-350 (460)
114 4aby_A DNA repair protein RECN 99.9 2.4E-23 8.2E-28 253.7 16.6 203 865-1073 49-380 (415)
115 4aby_A DNA repair protein RECN 99.9 1E-22 3.4E-27 248.2 15.5 236 167-409 48-381 (415)
116 3b85_A Phosphate starvation-in 99.9 6.4E-25 2.2E-29 240.5 -12.6 144 862-1051 11-159 (208)
117 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 8.4E-21 2.9E-25 226.2 15.7 81 988-1071 277-363 (365)
118 1e69_A Chromosome segregation 99.8 5.5E-21 1.9E-25 224.5 13.5 86 988-1076 217-308 (322)
119 4gp7_A Metallophosphoesterase; 99.8 5.5E-22 1.9E-26 211.2 2.0 143 869-1051 1-160 (171)
120 3b85_A Phosphate starvation-in 99.8 8.9E-23 3E-27 223.5 -4.8 148 165-390 11-161 (208)
121 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 1.9E-20 6.4E-25 223.2 14.4 84 321-407 275-364 (365)
122 2v9p_A Replication protein E1; 99.8 3.1E-23 1E-27 238.6 -10.3 157 167-420 113-270 (305)
123 1tq4_A IIGP1, interferon-induc 99.8 5.8E-23 2E-27 245.9 -8.6 171 864-1062 36-248 (413)
124 1e69_A Chromosome segregation 99.8 4.1E-20 1.4E-24 217.1 11.0 88 323-414 217-311 (322)
125 1tq4_A IIGP1, interferon-induc 99.8 7E-22 2.4E-26 236.6 -4.6 172 167-398 36-248 (413)
126 1znw_A Guanylate kinase, GMP k 99.8 6.9E-23 2.3E-27 225.2 -15.1 184 863-1068 8-205 (207)
127 4gp7_A Metallophosphoesterase; 99.8 1.8E-20 6.3E-25 199.4 2.1 65 325-391 83-163 (171)
128 1ye8_A Protein THEP1, hypothet 99.8 3.4E-20 1.2E-24 198.3 3.2 149 182-407 2-159 (178)
129 1ye8_A Protein THEP1, hypothet 99.8 3.7E-20 1.3E-24 198.0 3.2 147 879-1074 2-161 (178)
130 3sop_A Neuronal-specific septi 99.7 2.3E-20 8E-25 212.8 -6.0 147 879-1050 4-150 (270)
131 3b9q_A Chloroplast SRP recepto 99.7 2.2E-19 7.7E-24 207.7 1.4 174 170-405 90-284 (302)
132 3b9q_A Chloroplast SRP recepto 99.7 1.8E-19 6.3E-24 208.5 -0.2 154 867-1049 90-256 (302)
133 2o5v_A DNA replication and rep 99.7 1.2E-17 4.1E-22 197.1 14.9 86 320-414 259-354 (359)
134 2pt7_A CAG-ALFA; ATPase, prote 99.7 3.4E-19 1.2E-23 209.1 1.1 131 866-1068 160-291 (330)
135 2v9p_A Replication protein E1; 99.7 1.7E-21 5.7E-26 224.2 -19.5 169 839-1090 102-271 (305)
136 2dpy_A FLII, flagellum-specifi 99.7 1.6E-19 5.5E-24 219.0 -3.2 190 156-414 134-342 (438)
137 3sop_A Neuronal-specific septi 99.7 4.3E-19 1.5E-23 202.4 0.3 147 182-387 4-150 (270)
138 1z6g_A Guanylate kinase; struc 99.7 2.6E-21 8.8E-26 214.3 -18.4 177 865-1061 11-204 (218)
139 1z6g_A Guanylate kinase; struc 99.7 8.8E-21 3E-25 210.0 -14.2 154 169-373 12-175 (218)
140 2og2_A Putative signal recogni 99.7 5.6E-19 1.9E-23 208.0 -1.5 153 868-1049 148-313 (359)
141 2og2_A Putative signal recogni 99.7 1.8E-18 6.2E-23 203.6 2.6 173 171-405 148-341 (359)
142 2dpy_A FLII, flagellum-specifi 99.7 7.8E-19 2.7E-23 213.0 -2.4 175 863-1076 144-339 (438)
143 1znw_A Guanylate kinase, GMP k 99.7 7.1E-20 2.4E-24 201.1 -11.0 184 167-401 9-202 (207)
144 3qkt_A DNA double-strand break 99.7 8.6E-17 2.9E-21 190.1 14.4 77 988-1066 246-328 (339)
145 1cr0_A DNA primase/helicase; R 99.7 9E-18 3.1E-22 194.9 4.7 184 864-1068 22-236 (296)
146 2pt7_A CAG-ALFA; ATPase, prote 99.7 8.9E-18 3E-22 197.1 3.7 133 169-405 160-292 (330)
147 2o5v_A DNA replication and rep 99.7 1.1E-16 3.9E-21 188.7 11.7 78 990-1076 265-351 (359)
148 4ad8_A DNA repair protein RECN 99.7 1.2E-16 4.2E-21 199.5 10.6 77 988-1067 394-473 (517)
149 3aez_A Pantothenate kinase; tr 99.6 3.7E-18 1.3E-22 198.4 -3.7 128 172-358 81-209 (312)
150 3aez_A Pantothenate kinase; tr 99.6 3.6E-19 1.2E-23 206.9 -12.8 123 874-1023 87-209 (312)
151 3qkt_A DNA double-strand break 99.6 1.2E-15 4E-20 180.4 17.0 81 321-404 244-332 (339)
152 4ad8_A DNA repair protein RECN 99.6 7.4E-16 2.5E-20 192.4 13.9 77 323-403 394-473 (517)
153 1cr0_A DNA primase/helicase; R 99.6 1.7E-16 5.8E-21 184.2 5.4 185 167-405 22-237 (296)
154 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 1.2E-15 4E-20 157.4 10.4 76 988-1065 55-136 (148)
155 2eyu_A Twitching motility prot 99.6 2.2E-16 7.6E-21 179.0 4.4 132 865-1066 15-147 (261)
156 2jeo_A Uridine-cytidine kinase 99.6 3.3E-17 1.1E-21 184.8 -2.9 155 862-1049 10-164 (245)
157 2jeo_A Uridine-cytidine kinase 99.6 1.5E-16 5.3E-21 179.3 2.5 178 166-418 11-189 (245)
158 2ehv_A Hypothetical protein PH 99.6 7.8E-17 2.7E-21 181.7 -0.2 169 867-1066 19-207 (251)
159 3thx_A DNA mismatch repair pro 99.6 1.7E-15 5.8E-20 197.7 11.7 149 863-1076 648-808 (934)
160 2obl_A ESCN; ATPase, hydrolase 99.6 2.5E-16 8.5E-21 185.5 2.0 175 864-1076 59-250 (347)
161 2obl_A ESCN; ATPase, hydrolase 99.6 1.3E-16 4.5E-21 187.8 -0.8 181 166-414 58-253 (347)
162 2o8b_B DNA mismatch repair pro 99.6 3.6E-16 1.2E-20 206.7 2.3 157 864-1075 769-936 (1022)
163 3thx_A DNA mismatch repair pro 99.6 3.7E-15 1.3E-19 194.6 10.5 89 324-414 720-811 (934)
164 4a74_A DNA repair and recombin 99.6 3.6E-16 1.2E-20 174.0 0.1 152 872-1067 20-200 (231)
165 1tf7_A KAIC; homohexamer, hexa 99.5 7.2E-15 2.5E-19 183.8 9.6 159 170-404 270-444 (525)
166 3thx_B DNA mismatch repair pro 99.5 8.1E-15 2.8E-19 190.8 8.2 145 863-1061 659-805 (918)
167 4a74_A DNA repair and recombin 99.5 3.5E-15 1.2E-19 166.0 3.6 153 175-403 20-200 (231)
168 2eyu_A Twitching motility prot 99.5 3.9E-15 1.3E-19 168.8 3.7 133 168-402 15-147 (261)
169 3asz_A Uridine kinase; cytidin 99.5 7.4E-17 2.5E-21 177.4 -10.4 145 874-1050 3-161 (211)
170 2qnr_A Septin-2, protein NEDD5 99.5 1.8E-16 6.1E-21 183.9 -7.7 157 862-1051 9-168 (301)
171 2i3b_A HCR-ntpase, human cance 99.5 2.4E-16 8.1E-21 169.9 -6.8 163 180-414 1-176 (189)
172 1rj9_A FTSY, signal recognitio 99.5 1.2E-15 4E-20 176.6 -1.7 149 876-1051 101-259 (304)
173 2o8b_B DNA mismatch repair pro 99.5 3.2E-15 1.1E-19 197.8 1.8 160 167-413 769-939 (1022)
174 1ewq_A DNA mismatch repair pro 99.5 3.4E-15 1.1E-19 191.8 1.9 128 864-1051 566-699 (765)
175 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 5.2E-14 1.8E-18 145.1 9.5 83 320-405 52-142 (148)
176 3asz_A Uridine kinase; cytidin 99.5 1.1E-15 3.6E-20 168.1 -4.3 140 177-380 3-155 (211)
177 1pzn_A RAD51, DNA repair and r 99.5 4.3E-15 1.5E-19 175.7 0.5 170 168-412 118-311 (349)
178 2ehv_A Hypothetical protein PH 99.5 4E-15 1.4E-19 167.7 0.0 169 169-401 18-206 (251)
179 1pzn_A RAD51, DNA repair and r 99.5 2.1E-15 7.3E-20 178.3 -2.3 161 866-1071 119-305 (349)
180 2w0m_A SSO2452; RECA, SSPF, un 99.5 2E-14 6.9E-19 159.8 4.7 167 864-1066 9-191 (235)
181 1w1w_A Structural maintenance 99.5 2.7E-13 9.1E-18 165.6 14.8 75 324-401 332-410 (430)
182 3thx_B DNA mismatch repair pro 99.4 8.4E-14 2.9E-18 181.3 10.3 81 324-407 734-816 (918)
183 1wb9_A DNA mismatch repair pro 99.4 1.9E-14 6.4E-19 186.1 3.3 154 864-1073 595-750 (800)
184 1ewq_A DNA mismatch repair pro 99.4 1.7E-14 5.9E-19 185.2 2.8 144 167-408 566-716 (765)
185 2qnr_A Septin-2, protein NEDD5 99.4 5.6E-15 1.9E-19 171.4 -2.1 156 166-387 10-167 (301)
186 1nlf_A Regulatory protein REPA 99.4 1.4E-13 4.9E-18 158.1 9.7 151 873-1051 26-182 (279)
187 3szr_A Interferon-induced GTP- 99.4 4.5E-15 1.5E-19 188.0 -3.3 165 183-416 48-237 (608)
188 3jvv_A Twitching mobility prot 99.4 2.2E-14 7.6E-19 169.3 2.7 132 866-1067 114-246 (356)
189 1rj9_A FTSY, signal recognitio 99.4 2.1E-14 7.3E-19 166.1 2.1 148 179-386 101-257 (304)
190 2i3b_A HCR-ntpase, human cance 99.4 2.4E-15 8.3E-20 162.0 -8.0 160 877-1076 1-171 (189)
191 2w0m_A SSO2452; RECA, SSPF, un 99.4 8.7E-14 3E-18 154.7 3.6 171 167-403 9-192 (235)
192 1pui_A ENGB, probable GTP-bind 99.4 2.9E-14 1E-18 156.1 -0.8 179 839-1042 4-202 (210)
193 3szr_A Interferon-induced GTP- 99.4 6.9E-14 2.3E-18 177.2 0.1 136 880-1051 48-197 (608)
194 1wb9_A DNA mismatch repair pro 99.4 3.1E-13 1E-17 174.7 6.1 156 167-409 595-751 (800)
195 2qag_C Septin-7; cell cycle, c 99.3 6.9E-14 2.3E-18 168.2 -1.0 164 838-1051 11-178 (418)
196 1nlf_A Regulatory protein REPA 99.3 2.9E-12 9.8E-17 147.2 11.7 153 176-389 26-183 (279)
197 3kta_B Chromosome segregation 99.3 2.9E-12 9.9E-17 135.5 10.0 75 988-1065 62-140 (173)
198 1lw7_A Transcriptional regulat 99.3 5.7E-15 2E-19 176.4 -13.1 164 169-401 157-342 (365)
199 3jvv_A Twitching mobility prot 99.3 5.2E-13 1.8E-17 157.6 3.8 59 335-403 188-246 (356)
200 2cvh_A DNA repair and recombin 99.3 1.6E-12 5.6E-17 143.2 6.8 154 865-1067 7-185 (220)
201 1s96_A Guanylate kinase, GMP k 99.3 3.5E-13 1.2E-17 148.6 0.4 149 175-419 11-163 (219)
202 2qag_B Septin-6, protein NEDD5 99.3 5.2E-13 1.8E-17 159.6 1.9 170 863-1049 27-218 (427)
203 3kta_B Chromosome segregation 99.3 2.4E-11 8.1E-16 128.5 12.9 90 323-416 62-158 (173)
204 2bdt_A BH3686; alpha-beta prot 99.3 1.8E-15 6.1E-20 163.3 -19.3 169 877-1076 2-179 (189)
205 2ewv_A Twitching motility prot 99.3 1.2E-12 4.1E-17 156.0 3.1 130 866-1065 127-257 (372)
206 1s96_A Guanylate kinase, GMP k 99.3 1.3E-13 4.4E-18 152.2 -5.0 128 871-1051 10-141 (219)
207 2bdt_A BH3686; alpha-beta prot 99.3 2.6E-14 8.8E-19 154.2 -10.5 169 180-414 2-182 (189)
208 2qag_C Septin-7; cell cycle, c 99.2 1.8E-12 6E-17 155.9 3.0 131 166-360 23-157 (418)
209 2gza_A Type IV secretion syste 99.2 1.6E-12 5.5E-17 154.5 2.6 137 866-1067 164-302 (361)
210 1zp6_A Hypothetical protein AT 99.2 4.4E-14 1.5E-18 152.5 -10.0 153 873-1047 5-158 (191)
211 2f1r_A Molybdopterin-guanine d 99.2 2.2E-13 7.4E-18 144.1 -5.3 138 181-373 3-161 (171)
212 2gza_A Type IV secretion syste 99.2 5.5E-12 1.9E-16 149.9 5.8 66 169-237 164-231 (361)
213 1htw_A HI0065; nucleotide-bind 99.2 8.6E-13 3E-17 137.8 -1.4 78 167-251 20-97 (158)
214 1nij_A Hypothetical protein YJ 99.2 1.2E-14 4.1E-19 170.1 -18.1 156 878-1051 5-190 (318)
215 2cvh_A DNA repair and recombin 99.2 3.1E-11 1E-15 132.9 10.2 77 326-403 85-185 (220)
216 1zp6_A Hypothetical protein AT 99.2 5.7E-12 1.9E-16 135.8 3.1 140 176-369 5-145 (191)
217 2bbw_A Adenylate kinase 4, AK4 99.2 1.3E-13 4.4E-18 155.4 -10.2 147 876-1039 26-199 (246)
218 1pui_A ENGB, probable GTP-bind 99.2 1.3E-12 4.4E-17 143.0 -2.7 66 304-373 132-198 (210)
219 2bbw_A Adenylate kinase 4, AK4 99.2 4.7E-13 1.6E-17 150.8 -7.2 156 179-373 26-198 (246)
220 1lw7_A Transcriptional regulat 99.1 2E-13 6.9E-18 163.0 -11.1 163 866-1065 157-342 (365)
221 2ewv_A Twitching motility prot 99.1 1.2E-11 4.2E-16 147.3 3.0 131 169-401 127-257 (372)
222 1n0w_A DNA repair protein RAD5 99.1 3.1E-11 1.1E-15 135.1 6.2 157 867-1067 13-209 (243)
223 3auy_A DNA double-strand break 99.1 9.3E-11 3.2E-15 140.2 10.5 78 988-1068 278-362 (371)
224 1htw_A HI0065; nucleotide-bind 99.1 3.5E-12 1.2E-16 133.2 -1.7 79 863-947 19-97 (158)
225 2rcn_A Probable GTPase ENGC; Y 99.1 2.7E-11 9.1E-16 142.2 5.3 122 867-1005 206-328 (358)
226 2yhs_A FTSY, cell division pro 99.1 4.1E-12 1.4E-16 153.5 -2.6 153 867-1048 283-447 (503)
227 2rcn_A Probable GTPase ENGC; Y 99.1 1.5E-11 5.1E-16 144.3 2.2 122 169-340 205-328 (358)
228 2qag_B Septin-6, protein NEDD5 99.1 1.8E-11 6.3E-16 146.2 2.7 174 167-382 28-214 (427)
229 1odf_A YGR205W, hypothetical 3 99.1 1.3E-11 4.5E-16 141.8 1.0 132 178-360 29-169 (290)
230 1n0w_A DNA repair protein RAD5 99.1 7E-11 2.4E-15 132.2 6.6 45 175-219 19-67 (243)
231 1nij_A Hypothetical protein YJ 99.1 3.2E-13 1.1E-17 157.9 -14.3 160 180-390 4-192 (318)
232 2kjq_A DNAA-related protein; s 99.1 8.5E-11 2.9E-15 121.6 5.4 45 1006-1051 81-126 (149)
233 2qm8_A GTPase/ATPase; G protei 99.1 4.3E-13 1.5E-17 157.8 -13.6 164 864-1037 42-259 (337)
234 2f1r_A Molybdopterin-guanine d 99.0 1.5E-12 5.1E-17 137.7 -8.4 139 878-1041 3-164 (171)
235 2yhs_A FTSY, cell division pro 99.0 2.9E-11 9.9E-16 146.1 1.0 81 170-253 283-372 (503)
236 2qm8_A GTPase/ATPase; G protei 99.0 6.3E-12 2.2E-16 147.9 -5.6 181 168-372 43-259 (337)
237 1w1w_A Structural maintenance 99.0 3.4E-10 1.2E-14 138.0 9.4 76 989-1066 332-411 (430)
238 1udx_A The GTP-binding protein 99.0 1.2E-11 4.3E-16 148.5 -3.4 171 867-1062 147-320 (416)
239 3e70_C DPA, signal recognition 99.0 1E-11 3.5E-16 144.9 -4.0 143 874-1049 126-278 (328)
240 3e70_C DPA, signal recognition 99.0 4.6E-11 1.6E-15 139.5 0.6 75 176-253 125-208 (328)
241 3ec2_A DNA replication protein 99.0 1.9E-10 6.4E-15 122.9 5.3 47 1006-1052 98-145 (180)
242 1udx_A The GTP-binding protein 99.0 3.1E-11 1.1E-15 145.0 -1.7 170 170-397 147-319 (416)
243 2oap_1 GSPE-2, type II secreti 98.9 2.6E-12 8.9E-17 158.7 -13.8 173 864-1051 247-451 (511)
244 2oap_1 GSPE-2, type II secreti 98.9 8.9E-12 3E-16 153.9 -9.7 84 168-254 248-331 (511)
245 3auy_A DNA double-strand break 98.9 2.2E-09 7.4E-14 128.3 11.2 97 301-401 245-359 (371)
246 1p9r_A General secretion pathw 98.9 2.5E-11 8.5E-16 146.1 -5.8 137 167-348 156-314 (418)
247 3lda_A DNA repair protein RAD5 98.9 4.6E-10 1.6E-14 134.3 5.1 156 867-1067 167-363 (400)
248 2yv5_A YJEQ protein; hydrolase 98.9 7E-11 2.4E-15 136.9 -2.1 122 874-1004 162-301 (302)
249 1odf_A YGR205W, hypothetical 3 98.9 6E-11 2.1E-15 136.3 -2.7 128 875-1025 29-169 (290)
250 1p9r_A General secretion pathw 98.9 3.9E-12 1.3E-16 153.1 -13.2 145 855-1013 147-314 (418)
251 2yv5_A YJEQ protein; hydrolase 98.9 3.6E-10 1.2E-14 130.9 3.7 125 177-338 162-300 (302)
252 3ec2_A DNA replication protein 98.9 2.7E-10 9.2E-15 121.6 1.8 47 341-388 98-145 (180)
253 1lvg_A Guanylate kinase, GMP k 98.9 9.5E-13 3.2E-17 143.2 -18.3 57 336-402 116-173 (198)
254 3c8u_A Fructokinase; YP_612366 98.9 6.4E-11 2.2E-15 129.7 -4.8 30 177-206 19-48 (208)
255 1sxj_E Activator 1 40 kDa subu 98.8 1.5E-09 5E-14 128.8 5.6 164 880-1089 39-204 (354)
256 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 2.4E-11 8.3E-16 144.5 -10.6 169 176-413 16-210 (392)
257 2x8a_A Nuclear valosin-contain 98.8 2.4E-11 8.3E-16 138.9 -10.8 141 168-368 34-190 (274)
258 3lda_A DNA repair protein RAD5 98.8 3.5E-09 1.2E-13 126.7 7.2 62 342-404 272-364 (400)
259 3c8u_A Fructokinase; YP_612366 98.8 6E-11 2.1E-15 130.0 -8.6 120 874-1018 19-140 (208)
260 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 2E-11 7E-16 145.2 -13.7 170 873-1077 16-209 (392)
261 2kjq_A DNAA-related protein; s 98.8 6.4E-09 2.2E-13 107.4 6.7 33 169-206 30-62 (149)
262 1sq5_A Pantothenate kinase; P- 98.7 3.8E-10 1.3E-14 131.3 -3.5 73 178-255 78-155 (308)
263 1lvg_A Guanylate kinase, GMP k 98.7 4E-12 1.4E-16 138.3 -19.5 56 1001-1065 116-172 (198)
264 1in4_A RUVB, holliday junction 98.7 2E-10 6.9E-15 135.3 -8.2 170 167-396 31-211 (334)
265 1t9h_A YLOQ, probable GTPase E 98.7 1.5E-09 5.3E-14 125.0 -0.9 118 872-997 168-302 (307)
266 1in4_A RUVB, holliday junction 98.7 2E-10 6.8E-15 135.3 -8.9 152 863-1038 30-194 (334)
267 1u0l_A Probable GTPase ENGC; p 98.7 2E-09 6.7E-14 124.8 -1.2 74 175-252 164-259 (301)
268 1sxj_E Activator 1 40 kDa subu 98.7 2.1E-08 7.2E-13 118.8 7.7 135 183-388 39-175 (354)
269 2x8a_A Nuclear valosin-contain 98.6 3E-11 1E-15 138.1 -16.8 129 863-1019 32-164 (274)
270 2r6a_A DNAB helicase, replicat 98.6 1.7E-08 5.9E-13 123.8 5.6 179 864-1067 190-399 (454)
271 1t9h_A YLOQ, probable GTPase E 98.6 7.5E-09 2.6E-13 119.2 2.1 72 175-250 168-248 (307)
272 2dr3_A UPF0273 protein PH0284; 98.6 4.8E-09 1.7E-13 117.4 0.5 60 1007-1066 127-196 (247)
273 1vma_A Cell division protein F 98.6 4E-08 1.4E-12 113.5 7.1 113 173-372 97-212 (306)
274 1u0l_A Probable GTPase ENGC; p 98.6 5.8E-09 2E-13 120.8 -0.3 101 873-982 165-288 (301)
275 3euj_A Chromosome partition pr 98.5 2.1E-08 7.3E-13 121.9 2.5 53 168-224 18-70 (483)
276 1vma_A Cell division protein F 98.5 3.1E-08 1.1E-12 114.4 2.9 112 870-1036 97-211 (306)
277 2px0_A Flagellar biosynthesis 98.5 2.2E-07 7.6E-12 107.0 9.9 142 178-408 103-247 (296)
278 1ls1_A Signal recognition part 98.5 1.9E-07 6.5E-12 107.6 8.5 118 868-1036 91-209 (295)
279 3k1j_A LON protease, ATP-depen 98.5 1.9E-08 6.5E-13 127.8 -0.1 159 167-370 47-227 (604)
280 3lnc_A Guanylate kinase, GMP k 98.4 5.8E-10 2E-14 124.1 -13.0 38 865-902 15-53 (231)
281 2dr3_A UPF0273 protein PH0284; 98.4 8.6E-07 2.9E-11 98.9 12.8 60 342-402 127-196 (247)
282 1sq5_A Pantothenate kinase; P- 98.4 1.7E-08 5.7E-13 117.4 -1.3 86 865-952 49-156 (308)
283 1oix_A RAS-related protein RAB 98.4 3.5E-08 1.2E-12 106.1 0.2 38 997-1036 152-189 (191)
284 2zr9_A Protein RECA, recombina 98.4 2.8E-07 9.6E-12 108.6 7.8 78 997-1075 126-237 (349)
285 1iy2_A ATP-dependent metallopr 98.4 2.6E-10 8.9E-15 130.7 -18.0 124 864-1011 62-190 (278)
286 2r6a_A DNAB helicase, replicat 98.4 6.7E-07 2.3E-11 109.6 10.6 183 166-405 189-401 (454)
287 1ixz_A ATP-dependent metallopr 98.4 2.8E-10 9.7E-15 128.5 -18.0 128 864-1017 38-170 (254)
288 3k1j_A LON protease, ATP-depen 98.4 1E-08 3.6E-13 130.2 -6.3 161 862-1035 45-227 (604)
289 3euj_A Chromosome partition pr 98.3 5.5E-08 1.9E-12 118.3 0.1 51 865-918 18-68 (483)
290 3tr0_A Guanylate kinase, GMP k 98.3 2.9E-08 9.8E-13 107.9 -2.5 71 174-251 1-74 (205)
291 2px0_A Flagellar biosynthesis 98.3 2.8E-07 9.5E-12 106.2 5.4 141 875-1073 103-247 (296)
292 1ls1_A Signal recognition part 98.3 1.3E-06 4.4E-11 100.7 10.5 118 171-371 91-209 (295)
293 2ius_A DNA translocase FTSK; n 98.3 1.7E-07 5.7E-12 114.9 2.2 166 172-388 159-343 (512)
294 1oix_A RAS-related protein RAB 98.3 2.4E-07 8.2E-12 99.6 2.9 43 326-370 146-188 (191)
295 1iy2_A ATP-dependent metallopr 98.3 2.9E-09 1E-13 122.0 -13.0 75 168-249 63-141 (278)
296 2ius_A DNA translocase FTSK; n 98.3 1.3E-08 4.6E-13 124.5 -8.2 162 869-1051 159-343 (512)
297 3tr0_A Guanylate kinase, GMP k 98.3 4.7E-08 1.6E-12 106.2 -3.1 67 871-943 1-70 (205)
298 1ixz_A ATP-dependent metallopr 98.2 4.2E-09 1.4E-13 118.9 -12.8 47 168-221 39-85 (254)
299 3hr8_A Protein RECA; alpha and 98.2 1.5E-06 5E-11 102.2 6.8 42 175-219 56-98 (356)
300 2zr9_A Protein RECA, recombina 98.2 2.1E-06 7.2E-11 101.1 8.0 31 175-205 56-86 (349)
301 3lnc_A Guanylate kinase, GMP k 98.1 6.1E-07 2.1E-11 99.6 2.4 39 168-206 15-54 (231)
302 2f9l_A RAB11B, member RAS onco 98.1 1.8E-06 6.1E-11 93.2 4.5 37 999-1037 130-166 (199)
303 1qhl_A Protein (cell division 98.1 1.3E-07 4.6E-12 104.2 -4.8 59 174-236 22-91 (227)
304 2qtf_A Protein HFLX, GTP-bindi 98.0 4.4E-06 1.5E-10 99.0 7.2 160 182-373 181-353 (364)
305 2ce7_A Cell division protein F 98.0 3.8E-06 1.3E-10 102.6 6.6 59 993-1051 93-165 (476)
306 2qtf_A Protein HFLX, GTP-bindi 98.0 2.3E-06 7.9E-11 101.4 4.6 148 879-1038 181-353 (364)
307 1svm_A Large T antigen; AAA+ f 98.0 6.1E-08 2.1E-12 115.0 -10.5 144 864-1019 156-312 (377)
308 3hr8_A Protein RECA; alpha and 98.0 1.6E-06 5.5E-11 101.8 1.4 49 866-916 48-99 (356)
309 4eun_A Thermoresistant glucoki 97.9 5.5E-07 1.9E-11 97.6 -2.5 72 174-252 23-96 (200)
310 1qhl_A Protein (cell division 97.9 2.7E-07 9.2E-12 101.8 -5.8 59 871-932 22-91 (227)
311 2f9l_A RAB11B, member RAS onco 97.9 7.8E-06 2.7E-10 88.1 5.2 38 333-372 129-166 (199)
312 4eun_A Thermoresistant glucoki 97.9 8.1E-07 2.8E-11 96.3 -3.3 56 871-932 23-80 (200)
313 4a1f_A DNAB helicase, replicat 97.8 8.1E-06 2.8E-10 95.2 4.3 129 865-1048 34-164 (338)
314 2ce7_A Cell division protein F 97.8 3.6E-05 1.2E-09 94.0 9.5 34 169-204 40-73 (476)
315 3kta_A Chromosome segregation 97.8 9.8E-06 3.3E-10 86.1 3.3 36 171-207 18-53 (182)
316 1zu4_A FTSY; GTPase, signal re 97.7 6.1E-06 2.1E-10 96.0 1.5 81 169-252 94-187 (320)
317 4a1f_A DNAB helicase, replicat 97.7 3.5E-05 1.2E-09 89.8 7.9 39 166-204 32-70 (338)
318 2j41_A Guanylate kinase; GMP, 97.7 9E-06 3.1E-10 88.0 2.3 32 176-207 2-33 (207)
319 2xau_A PRE-mRNA-splicing facto 97.7 1.2E-05 4.1E-10 104.5 3.6 75 989-1064 189-265 (773)
320 4e22_A Cytidylate kinase; P-lo 97.7 1.8E-06 6.2E-11 97.2 -4.4 75 169-249 19-113 (252)
321 3a00_A Guanylate kinase, GMP k 97.6 1.2E-05 4E-10 86.0 1.8 27 180-206 1-27 (186)
322 3vaa_A Shikimate kinase, SK; s 97.6 1.6E-05 5.3E-10 86.0 2.6 39 167-205 12-50 (199)
323 2e87_A Hypothetical protein PH 97.6 6.4E-05 2.2E-09 89.0 8.0 61 989-1051 230-293 (357)
324 2dhr_A FTSH; AAA+ protein, hex 97.6 1.6E-06 5.5E-11 106.5 -6.0 49 168-223 54-102 (499)
325 3uie_A Adenylyl-sulfate kinase 97.6 4.5E-06 1.5E-10 90.3 -2.6 52 167-222 12-65 (200)
326 3nwj_A ATSK2; P loop, shikimat 97.6 5.9E-06 2E-10 92.6 -1.8 40 166-205 31-73 (250)
327 3nwj_A ATSK2; P loop, shikimat 97.6 6.8E-06 2.3E-10 92.1 -1.3 52 838-901 17-72 (250)
328 3kta_A Chromosome segregation 97.5 2.7E-05 9.3E-10 82.6 2.5 34 868-902 18-51 (182)
329 2dhr_A FTSH; AAA+ protein, hex 97.5 9.8E-07 3.4E-11 108.3 -10.2 129 865-1019 54-187 (499)
330 2j41_A Guanylate kinase; GMP, 97.5 3E-05 1E-09 83.9 2.6 30 873-902 2-31 (207)
331 2xau_A PRE-mRNA-splicing facto 97.5 7.4E-05 2.5E-09 97.1 6.5 72 324-396 189-261 (773)
332 2dy1_A Elongation factor G; tr 97.5 2.8E-05 9.5E-10 99.5 2.3 132 871-1051 3-137 (665)
333 1kgd_A CASK, peripheral plasma 97.5 3.8E-05 1.3E-09 81.6 2.6 38 178-217 3-40 (180)
334 1zu4_A FTSY; GTPase, signal re 97.4 2.1E-05 7.3E-10 91.4 0.5 50 866-917 94-143 (320)
335 1jjv_A Dephospho-COA kinase; P 97.4 3.2E-05 1.1E-09 83.9 1.6 71 992-1066 61-132 (206)
336 4e22_A Cytidylate kinase; P-lo 97.4 1.6E-05 5.4E-10 89.5 -1.5 57 875-933 25-96 (252)
337 3t34_A Dynamin-related protein 97.4 1.9E-05 6.5E-10 93.7 -0.9 57 991-1048 155-212 (360)
338 3vaa_A Shikimate kinase, SK; s 97.4 6.2E-05 2.1E-09 81.3 3.1 38 864-901 12-49 (199)
339 3a00_A Guanylate kinase, GMP k 97.4 2.8E-05 9.7E-10 83.0 0.2 26 877-902 1-26 (186)
340 3uie_A Adenylyl-sulfate kinase 97.3 1.2E-05 4.2E-10 86.9 -3.0 50 865-917 13-64 (200)
341 3t34_A Dynamin-related protein 97.3 1.8E-05 6.1E-10 94.0 -2.3 43 167-215 24-68 (360)
342 2vp4_A Deoxynucleoside kinase; 97.3 5E-05 1.7E-09 84.1 1.4 42 173-221 13-54 (230)
343 2vp4_A Deoxynucleoside kinase; 97.3 4.3E-05 1.5E-09 84.6 0.6 42 870-917 13-54 (230)
344 1svm_A Large T antigen; AAA+ f 97.3 4.7E-05 1.6E-09 90.2 0.6 44 167-216 156-199 (377)
345 1ega_A Protein (GTP-binding pr 97.3 0.00022 7.7E-09 82.2 6.1 153 874-1061 6-169 (301)
346 1fnn_A CDC6P, cell division co 97.2 0.00037 1.3E-08 83.0 8.1 44 1007-1051 124-170 (389)
347 3bh0_A DNAB-like replicative h 97.2 0.00064 2.2E-08 78.9 9.4 38 166-203 54-91 (315)
348 3tau_A Guanylate kinase, GMP k 97.2 0.00015 5.2E-09 78.8 3.8 29 178-206 6-34 (208)
349 1v5w_A DMC1, meiotic recombina 97.2 0.00063 2.1E-08 80.0 9.3 34 867-900 111-145 (343)
350 1rz3_A Hypothetical protein rb 97.2 8.5E-05 2.9E-09 80.3 1.7 41 177-220 19-59 (201)
351 3bh0_A DNAB-like replicative h 97.2 0.00024 8.4E-09 82.4 5.3 132 864-1048 55-189 (315)
352 1kgd_A CASK, peripheral plasma 97.2 0.00012 4.3E-09 77.6 2.5 38 875-913 3-40 (180)
353 3ney_A 55 kDa erythrocyte memb 97.2 0.00015 5E-09 78.0 2.9 28 178-205 17-44 (197)
354 1knq_A Gluconate kinase; ALFA/ 97.1 0.00014 4.8E-09 76.5 2.7 37 178-221 6-42 (175)
355 2e87_A Hypothetical protein PH 97.1 0.00093 3.2E-08 79.0 10.0 57 324-383 230-287 (357)
356 1jjv_A Dephospho-COA kinase; P 97.1 0.00082 2.8E-08 72.6 8.5 70 326-401 60-131 (206)
357 2z43_A DNA repair and recombin 97.1 0.00085 2.9E-08 78.2 9.2 145 866-1049 95-257 (324)
358 2qt1_A Nicotinamide riboside k 97.0 0.00033 1.1E-08 75.9 4.4 30 175-204 16-45 (207)
359 3b9p_A CG5977-PA, isoform A; A 97.0 0.0017 5.9E-08 74.3 10.7 70 992-1061 97-183 (297)
360 2dy1_A Elongation factor G; tr 97.0 0.00011 3.9E-09 93.9 0.5 49 174-224 3-51 (665)
361 3tau_A Guanylate kinase, GMP k 97.0 0.00027 9.4E-09 76.8 3.0 28 875-902 6-33 (208)
362 3tqc_A Pantothenate kinase; bi 96.9 0.00011 3.8E-09 85.0 -0.6 38 169-206 75-118 (321)
363 3cr8_A Sulfate adenylyltranfer 96.9 0.00019 6.5E-09 89.2 1.3 43 175-220 364-408 (552)
364 2q6t_A DNAB replication FORK h 96.9 0.0015 5E-08 79.6 8.9 171 865-1066 188-397 (444)
365 3b9p_A CG5977-PA, isoform A; A 96.9 0.0048 1.6E-07 70.6 12.7 27 178-204 52-78 (297)
366 3tqc_A Pantothenate kinase; bi 96.9 8E-05 2.7E-09 86.2 -2.3 40 863-902 72-117 (321)
367 1knq_A Gluconate kinase; ALFA/ 96.9 0.00022 7.6E-09 74.9 1.1 36 875-916 6-41 (175)
368 1fnn_A CDC6P, cell division co 96.8 0.005 1.7E-07 73.1 12.8 29 179-207 41-71 (389)
369 2qt1_A Nicotinamide riboside k 96.8 0.00058 2E-08 73.9 4.2 29 873-901 17-45 (207)
370 1ega_A Protein (GTP-binding pr 96.8 0.0044 1.5E-07 71.3 11.6 65 326-397 101-169 (301)
371 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00061 2.1E-08 69.9 3.8 30 172-202 16-45 (149)
372 1kag_A SKI, shikimate kinase I 96.8 0.00041 1.4E-08 72.6 2.5 27 179-205 3-29 (173)
373 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00056 1.9E-08 70.2 3.4 29 869-898 16-44 (149)
374 1rz3_A Hypothetical protein rb 96.8 0.00021 7.3E-09 77.2 0.2 41 873-915 18-58 (201)
375 2z4s_A Chromosomal replication 96.7 0.00061 2.1E-08 82.9 3.7 70 1007-1077 193-264 (440)
376 2p67_A LAO/AO transport system 96.7 0.00022 7.6E-09 83.8 -0.7 49 168-219 44-92 (341)
377 2z43_A DNA repair and recombin 96.7 0.0041 1.4E-07 72.3 10.1 36 169-204 95-131 (324)
378 3kl4_A SRP54, signal recogniti 96.6 0.0031 1E-07 75.8 8.7 37 179-218 96-132 (433)
379 3kl4_A SRP54, signal recogniti 96.6 0.0019 6.4E-08 77.7 6.8 27 876-902 96-122 (433)
380 3ney_A 55 kDa erythrocyte memb 96.6 0.00055 1.9E-08 73.5 2.0 28 875-902 17-44 (197)
381 2qby_A CDC6 homolog 1, cell di 96.6 0.00036 1.2E-08 82.8 0.2 27 875-901 43-69 (386)
382 2www_A Methylmalonic aciduria 96.6 0.00058 2E-08 80.4 2.0 41 178-221 72-112 (349)
383 3cf0_A Transitional endoplasmi 96.6 0.0014 4.9E-08 75.4 5.0 30 872-901 44-73 (301)
384 1v5w_A DMC1, meiotic recombina 96.5 0.0087 3E-07 70.2 11.5 35 169-203 110-145 (343)
385 3cr8_A Sulfate adenylyltranfer 96.5 0.00036 1.2E-08 86.7 -0.6 42 873-916 365-408 (552)
386 1ypw_A Transitional endoplasmi 96.5 0.0014 5E-08 85.5 4.9 31 872-902 233-263 (806)
387 2z4s_A Chromosomal replication 96.5 0.00064 2.2E-08 82.6 1.3 69 342-411 193-263 (440)
388 2pez_A Bifunctional 3'-phospho 96.4 0.0007 2.4E-08 71.4 1.3 39 178-220 3-43 (179)
389 4eaq_A DTMP kinase, thymidylat 96.4 0.0011 3.9E-08 73.1 2.8 38 169-206 12-52 (229)
390 1kag_A SKI, shikimate kinase I 96.4 0.00097 3.3E-08 69.7 1.9 27 876-902 3-29 (173)
391 2gj8_A MNME, tRNA modification 96.3 0.003 1E-07 66.1 5.4 27 875-901 2-28 (172)
392 3m6a_A ATP-dependent protease 96.3 0.00074 2.5E-08 84.3 0.6 47 168-218 97-143 (543)
393 1m7g_A Adenylylsulfate kinase; 96.3 0.00074 2.5E-08 73.4 0.5 42 176-220 21-64 (211)
394 2qag_A Septin-2, protein NEDD5 96.3 0.00055 1.9E-08 81.0 -0.6 33 863-901 29-61 (361)
395 3ice_A Transcription terminati 96.3 0.00082 2.8E-08 78.4 0.6 32 869-900 166-197 (422)
396 2p67_A LAO/AO transport system 96.3 0.00043 1.5E-08 81.3 -1.8 38 864-901 43-80 (341)
397 2gj8_A MNME, tRNA modification 96.2 0.0036 1.2E-07 65.5 5.4 27 178-204 2-28 (172)
398 4fcw_A Chaperone protein CLPB; 96.2 0.011 3.9E-07 67.7 9.7 29 179-207 46-74 (311)
399 2qby_A CDC6 homolog 1, cell di 96.2 0.0016 5.5E-08 77.1 2.5 29 178-206 43-71 (386)
400 3ice_A Transcription terminati 96.2 0.0015 5.2E-08 76.2 2.2 50 155-204 135-198 (422)
401 3lxx_A GTPase IMAP family memb 96.1 0.016 5.4E-07 64.0 10.3 25 182-206 31-55 (239)
402 1m2o_B GTP-binding protein SAR 96.1 0.0034 1.2E-07 66.8 4.5 34 169-203 13-46 (190)
403 1mky_A Probable GTP-binding pr 96.1 0.0041 1.4E-07 75.6 5.7 41 181-221 181-230 (439)
404 1f6b_A SAR1; gtpases, N-termin 96.1 0.0016 5.5E-08 69.9 1.7 35 168-203 14-48 (198)
405 3qks_A DNA double-strand break 96.1 0.003 1E-07 68.3 3.8 31 172-203 16-46 (203)
406 3qks_A DNA double-strand break 96.1 0.0026 9E-08 68.8 3.4 29 869-898 16-44 (203)
407 1mky_A Probable GTP-binding pr 96.1 0.0041 1.4E-07 75.6 5.4 38 879-916 182-229 (439)
408 1m2o_B GTP-binding protein SAR 96.0 0.0042 1.4E-07 66.0 4.7 35 865-900 12-46 (190)
409 3bgw_A DNAB-like replicative h 96.0 0.0062 2.1E-07 73.9 6.6 35 865-899 185-219 (444)
410 1y63_A LMAJ004144AAA protein; 95.9 0.0032 1.1E-07 66.8 3.2 32 172-203 2-33 (184)
411 1cke_A CK, MSSA, protein (cyti 95.9 0.0026 8.9E-08 69.6 2.6 37 180-216 5-41 (227)
412 1f6b_A SAR1; gtpases, N-termin 95.9 0.0026 8.9E-08 68.2 2.5 35 865-900 14-48 (198)
413 1np6_A Molybdopterin-guanine d 95.9 0.0032 1.1E-07 66.2 3.0 40 181-220 7-46 (174)
414 2qor_A Guanylate kinase; phosp 95.9 0.0027 9.1E-08 68.6 2.4 29 177-205 9-37 (204)
415 4eaq_A DTMP kinase, thymidylat 95.9 0.0032 1.1E-07 69.5 3.0 36 867-902 13-51 (229)
416 2www_A Methylmalonic aciduria 95.9 0.0016 5.3E-08 76.7 0.5 40 875-916 72-111 (349)
417 3llm_A ATP-dependent RNA helic 95.9 0.0012 4.2E-08 73.0 -0.5 65 992-1058 162-227 (235)
418 3llm_A ATP-dependent RNA helic 95.8 0.0011 3.9E-08 73.3 -0.8 66 328-396 163-229 (235)
419 2ffh_A Protein (FFH); SRP54, s 95.8 0.0029 1E-07 75.9 2.6 46 171-221 91-136 (425)
420 2yvu_A Probable adenylyl-sulfa 95.8 0.0028 9.6E-08 67.2 2.2 31 177-207 10-40 (186)
421 1u94_A RECA protein, recombina 95.8 0.066 2.3E-06 62.8 13.8 35 170-204 51-87 (356)
422 2i1q_A DNA repair and recombin 95.8 0.031 1E-06 64.8 10.8 34 866-899 86-120 (322)
423 1u94_A RECA protein, recombina 95.7 0.009 3.1E-07 70.2 6.1 34 866-899 50-85 (356)
424 3m6a_A ATP-dependent protease 95.7 0.0022 7.6E-08 80.0 0.8 49 864-915 96-144 (543)
425 3h4m_A Proteasome-activating n 95.7 0.0081 2.8E-07 68.2 5.4 28 874-901 48-75 (285)
426 2ohf_A Protein OLA1, GTP-bindi 95.7 0.0048 1.6E-07 73.2 3.5 31 173-203 15-45 (396)
427 2qag_A Septin-2, protein NEDD5 95.7 0.0015 5.2E-08 77.2 -0.8 76 167-251 30-105 (361)
428 2b8t_A Thymidine kinase; deoxy 95.7 0.01 3.5E-07 65.0 5.8 53 1008-1065 89-150 (223)
429 2q6t_A DNAB replication FORK h 95.6 0.023 8E-07 69.0 9.7 38 167-204 187-224 (444)
430 1j8m_F SRP54, signal recogniti 95.6 0.0021 7.3E-08 73.7 0.4 46 171-220 89-135 (297)
431 2p5t_B PEZT; postsegregational 95.6 0.0036 1.2E-07 70.1 2.1 41 176-221 28-68 (253)
432 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0015 5E-08 76.1 -1.4 37 169-205 11-49 (359)
433 2pez_A Bifunctional 3'-phospho 95.6 0.0047 1.6E-07 65.0 2.7 27 875-901 3-29 (179)
434 2w58_A DNAI, primosome compone 95.5 0.0097 3.3E-07 63.8 4.9 113 876-1058 53-167 (202)
435 1cke_A CK, MSSA, protein (cyti 95.5 0.005 1.7E-07 67.3 2.5 56 877-932 5-73 (227)
436 3lxx_A GTPase IMAP family memb 95.4 0.046 1.6E-06 60.2 10.2 42 1007-1048 111-154 (239)
437 2qor_A Guanylate kinase; phosp 95.4 0.0053 1.8E-07 66.2 2.5 28 874-901 9-36 (204)
438 1y63_A LMAJ004144AAA protein; 95.4 0.006 2E-07 64.7 2.7 32 869-900 2-33 (184)
439 2wji_A Ferrous iron transport 95.4 0.013 4.4E-07 60.6 5.1 24 181-204 4-27 (165)
440 2wji_A Ferrous iron transport 95.3 0.014 4.9E-07 60.2 5.3 23 879-901 5-27 (165)
441 1m7g_A Adenylylsulfate kinase; 95.3 0.0032 1.1E-07 68.4 0.2 40 873-914 21-62 (211)
442 1l8q_A Chromosomal replication 95.3 0.021 7.3E-07 66.1 7.2 45 1006-1050 96-141 (324)
443 1lv7_A FTSH; alpha/beta domain 95.3 0.0089 3.1E-07 66.8 3.8 45 169-220 36-80 (257)
444 3h4m_A Proteasome-activating n 95.3 0.043 1.5E-06 62.1 9.5 28 178-205 49-76 (285)
445 1l8q_A Chromosomal replication 95.2 0.013 4.6E-07 67.9 5.4 27 179-205 36-62 (324)
446 2if2_A Dephospho-COA kinase; a 95.2 0.0079 2.7E-07 64.6 3.0 21 182-202 3-23 (204)
447 3cm0_A Adenylate kinase; ATP-b 95.1 0.0095 3.3E-07 62.8 3.4 27 178-204 2-28 (186)
448 3d8b_A Fidgetin-like protein 1 95.1 0.044 1.5E-06 64.5 9.4 27 875-901 115-141 (357)
449 2ga8_A Hypothetical 39.9 kDa p 95.1 0.0031 1.1E-07 73.4 -0.8 37 865-901 10-48 (359)
450 2wjg_A FEOB, ferrous iron tran 95.0 0.011 3.9E-07 62.0 3.6 22 182-203 9-30 (188)
451 3t61_A Gluconokinase; PSI-biol 95.0 0.0069 2.4E-07 65.0 1.9 25 180-204 18-42 (202)
452 2wjg_A FEOB, ferrous iron tran 95.0 0.018 6.1E-07 60.5 5.0 22 879-900 9-30 (188)
453 2v1u_A Cell division control p 95.0 0.018 6.2E-07 68.0 5.5 27 875-901 42-68 (387)
454 2ohf_A Protein OLA1, GTP-bindi 94.9 0.0096 3.3E-07 70.6 2.9 44 872-915 17-69 (396)
455 2b8t_A Thymidine kinase; deoxy 94.9 0.038 1.3E-06 60.4 7.4 53 343-401 89-150 (223)
456 1qhx_A CPT, protein (chloramph 94.9 0.011 3.7E-07 61.9 3.0 26 180-205 3-28 (178)
457 3kb2_A SPBC2 prophage-derived 94.9 0.0094 3.2E-07 61.8 2.4 24 182-205 3-26 (173)
458 2if2_A Dephospho-COA kinase; a 94.9 0.0087 3E-07 64.3 2.1 21 879-899 3-23 (204)
459 1q57_A DNA primase/helicase; d 94.8 0.12 4E-06 63.9 12.4 34 866-899 231-264 (503)
460 1sxj_C Activator 1 40 kDa subu 94.7 0.0043 1.5E-07 72.6 -0.7 41 167-207 31-73 (340)
461 2rhm_A Putative kinase; P-loop 94.6 0.015 5.3E-07 61.5 3.3 27 178-204 3-29 (193)
462 1np6_A Molybdopterin-guanine d 94.6 0.014 4.7E-07 61.4 2.8 38 878-915 7-45 (174)
463 3r20_A Cytidylate kinase; stru 94.6 0.013 4.3E-07 64.6 2.5 24 181-204 10-33 (233)
464 2ffh_A Protein (FFH); SRP54, s 94.6 0.007 2.4E-07 72.6 0.5 46 868-917 91-136 (425)
465 2p5t_B PEZT; postsegregational 94.5 0.0079 2.7E-07 67.3 0.7 45 866-915 22-66 (253)
466 1q3t_A Cytidylate kinase; nucl 94.5 0.014 4.8E-07 64.4 2.7 28 177-204 13-40 (236)
467 1kht_A Adenylate kinase; phosp 94.4 0.019 6.5E-07 60.6 3.4 26 180-205 3-28 (192)
468 3d8b_A Fidgetin-like protein 1 94.4 0.16 5.4E-06 59.7 11.7 27 178-204 115-141 (357)
469 1j8m_F SRP54, signal recogniti 94.4 0.006 2E-07 70.0 -0.7 46 868-916 89-135 (297)
470 1gvn_B Zeta; postsegregational 94.4 0.02 6.8E-07 65.3 3.6 36 178-218 31-66 (287)
471 2yvu_A Probable adenylyl-sulfa 94.4 0.019 6.4E-07 60.8 3.2 28 874-901 10-37 (186)
472 2ze6_A Isopentenyl transferase 94.3 0.016 5.4E-07 64.8 2.7 25 181-205 2-26 (253)
473 1xwi_A SKD1 protein; VPS4B, AA 94.2 0.16 5.6E-06 58.7 11.1 119 875-1065 43-177 (322)
474 3cm0_A Adenylate kinase; ATP-b 94.2 0.019 6.4E-07 60.5 2.9 25 875-899 2-26 (186)
475 1sxj_C Activator 1 40 kDa subu 94.2 0.0065 2.2E-07 71.1 -0.8 39 863-901 30-70 (340)
476 2v54_A DTMP kinase, thymidylat 94.2 0.023 7.8E-07 60.8 3.6 27 178-204 2-28 (204)
477 2zej_A Dardarin, leucine-rich 94.2 0.021 7.2E-07 60.1 3.1 23 182-204 4-26 (184)
478 3cmw_A Protein RECA, recombina 94.2 0.085 2.9E-06 72.9 9.7 30 176-205 728-757 (1706)
479 2zej_A Dardarin, leucine-rich 94.1 0.022 7.4E-07 60.0 3.1 22 879-900 4-25 (184)
480 3cf0_A Transitional endoplasmi 94.1 0.022 7.6E-07 65.4 3.4 30 176-205 45-74 (301)
481 3trf_A Shikimate kinase, SK; a 94.1 0.024 8.2E-07 59.7 3.4 26 179-204 4-29 (185)
482 1ypw_A Transitional endoplasmi 94.1 0.017 6E-07 75.3 2.7 32 175-206 233-264 (806)
483 1xp8_A RECA protein, recombina 94.1 0.054 1.8E-06 63.8 6.7 120 874-1048 71-209 (366)
484 3lw7_A Adenylate kinase relate 94.1 0.024 8.2E-07 58.6 3.2 19 182-200 3-21 (179)
485 2plr_A DTMP kinase, probable t 94.0 0.028 9.4E-07 60.4 3.8 28 179-206 3-30 (213)
486 3t61_A Gluconokinase; PSI-biol 94.0 0.019 6.5E-07 61.6 2.4 25 877-901 18-42 (202)
487 2qz4_A Paraplegin; AAA+, SPG7, 94.0 0.076 2.6E-06 59.1 7.5 120 874-1065 36-175 (262)
488 1ly1_A Polynucleotide kinase; 94.0 0.027 9.3E-07 58.7 3.5 22 181-202 3-24 (181)
489 2jaq_A Deoxyguanosine kinase; 93.9 0.021 7.2E-07 60.9 2.5 24 182-205 2-25 (205)
490 1xjc_A MOBB protein homolog; s 93.9 0.021 7.3E-07 59.5 2.4 26 181-206 5-30 (169)
491 3iij_A Coilin-interacting nucl 93.9 0.025 8.5E-07 59.4 2.9 26 179-204 10-35 (180)
492 2c95_A Adenylate kinase 1; tra 93.8 0.028 9.5E-07 59.6 3.3 27 178-204 7-33 (196)
493 1qhx_A CPT, protein (chloramph 93.8 0.027 9.2E-07 58.8 3.1 25 877-901 3-27 (178)
494 2wwf_A Thymidilate kinase, put 93.8 0.029 1E-06 60.3 3.4 27 178-204 8-34 (212)
495 3bgw_A DNAB-like replicative h 93.8 0.084 2.9E-06 64.0 7.8 38 167-204 184-221 (444)
496 1via_A Shikimate kinase; struc 93.8 0.021 7.3E-07 59.6 2.2 23 182-204 6-28 (175)
497 1ex7_A Guanylate kinase; subst 93.8 0.025 8.6E-07 60.0 2.7 25 181-205 2-26 (186)
498 3kb2_A SPBC2 prophage-derived 93.8 0.026 9E-07 58.4 2.8 22 879-900 3-24 (173)
499 1q3t_A Cytidylate kinase; nucl 93.7 0.024 8.1E-07 62.5 2.5 27 874-900 13-39 (236)
500 1vht_A Dephospho-COA kinase; s 93.7 0.033 1.1E-06 60.4 3.6 24 179-202 3-26 (218)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.1e-74 Score=783.55 Aligned_cols=216 Identities=29% Similarity=0.390 Sum_probs=179.8
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
...++|+|++++|+.. ...++|+|||++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.
T Consensus 1074 ~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~ 1141 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGS 1141 (1321)
T ss_dssp CCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTE
T ss_pred CCeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCE
Confidence 3469999999987421 23459999999999999999999999999999999999987 57999999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 046196 916 PKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-------IREALVGL 985 (1436)
Q Consensus 916 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~~g~ 985 (1436)
++.. ..+++.++||||++.++. -|++||+.|+. -|.+.+.+ .+.++++..++.+ -.|+.+|.
T Consensus 1142 di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge 1213 (1321)
T 4f4c_A 1142 EIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGD 1213 (1321)
T ss_dssp ETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETT
T ss_pred EhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccC---CCCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecC
Confidence 8754 457788999999998886 59999997642 12233322 3566777766643 34666664
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
. +.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+++|+++ ....+|+|+||+
T Consensus 1214 ~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld 1289 (1321)
T 4f4c_A 1214 R-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS 1289 (1321)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES
T ss_pred C-CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEE
Confidence 3 46899999999999999999999999999999999999999999999865 4899999999987 467799999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 1290 ~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1290 N-GTIIEKGTH 1299 (1321)
T ss_dssp S-SSEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999985
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3e-68 Score=725.05 Aligned_cols=215 Identities=24% Similarity=0.363 Sum_probs=173.4
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.++.. ....+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 1029 g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSC
T ss_pred CcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEE
Confidence 469999999887421 12358999999999999999999999999999999999987 579999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-------PIREALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-------~~~~~~~g~~ 986 (1436)
+.. ..+++.+|||+|++.++ +.||+||+.++... ...+.++ +.+.++..++. +-.|+.+|..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccCCC
Confidence 753 34567799999998776 57999999764211 1122222 34444444443 3345566643
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+.+||||||||++|||||+++|+||+|||||||||+.+...+++.|++. .+|+|||+++|+++. + ..+|+|++|++
T Consensus 1169 -G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~ 1244 (1284)
T 3g5u_A 1169 -GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN 1244 (1284)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET
T ss_pred -CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999885 458999999999873 4 66999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 1245 -G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 -GKVKEHGTH 1253 (1284)
T ss_dssp -BEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799999975
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.1e-56 Score=564.87 Aligned_cols=201 Identities=22% Similarity=0.276 Sum_probs=166.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ + ..|+++|+++++||++||+||||||||||+++|+|..+ +.+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE-----
Confidence 477788765542 1 25899999999999999999999999999999999887 56898875
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
.+.+||++|+....+.+||.|++....... ....+.++++++.+++.+..+..+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 235899999987778899999886531100 011245788999999988777664 579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhCeEEEEec-CcEEEEEcC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKR-GGEEIYVGP 1075 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~-Gg~~~y~G~ 1075 (1436)
||+||++|+.+|++|+|||||+|||+.++..+++.|++++ +.|.|||+++||+. .+...+|++++|++ .|+.+..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46899999999975 46778999999983 266778888
Q ss_pred CC
Q 046196 1076 LG 1077 (1436)
Q Consensus 1076 ~~ 1077 (1436)
+.
T Consensus 558 p~ 559 (607)
T 3bk7_A 558 PM 559 (607)
T ss_dssp CE
T ss_pred HH
Confidence 74
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.9e-57 Score=561.38 Aligned_cols=201 Identities=23% Similarity=0.295 Sum_probs=165.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ + ..|+++|++|++||++||+||||||||||+++|+|..+ +.+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE-----
Confidence 477778765542 1 25889999999999999999999999999999999887 46898875
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
...+||++|+....+.+||.|++........ . ..+.++++++.+++.+..+.. +..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDRE-----VNELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSB-----GGGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHH
Confidence 2358999999877788999998865311110 0 123467889999998766665 3579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEec-CcEEEEEcC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKR-GGEEIYVGP 1075 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~-Gg~~~y~G~ 1075 (1436)
||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|.|||+++||++ .+...||++++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 99999999999999999999999999999999999999874 5999999999976 57778999999984 267778888
Q ss_pred CC
Q 046196 1076 LG 1077 (1436)
Q Consensus 1076 ~~ 1077 (1436)
+.
T Consensus 488 ~~ 489 (538)
T 1yqt_A 488 PM 489 (538)
T ss_dssp CE
T ss_pred HH
Confidence 74
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.1e-54 Score=561.22 Aligned_cols=184 Identities=21% Similarity=0.277 Sum_probs=148.9
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCC-CcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQND-LHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~-~~~~~lTV 245 (1436)
+.+|+|+|+++++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 459999999999999999999999999999999995 222 3333211 12468999874 67889999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-ccccccccCcccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTMVGDEMLR 324 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 324 (1436)
.|++.+ ...+ . ...++.+|+.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~----------~-----------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG----------T-----------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS----------C-----------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--hhcC----------H-----------------------------HHHHHHHHHHcCCChhhhcCCcc-----
Confidence 999976 1110 0 01245678899995 55665554
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ .+.+++.++|+..++.++||+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-----~g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-----CGITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-----SCSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-----CCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 5999999999999999999999999999999999999999999987 24566668999999999999999999999
Q ss_pred EE-EecChhHHH
Q 046196 405 IV-YQGPRENVL 415 (1436)
Q Consensus 405 iv-~~G~~~~~~ 415 (1436)
++ +.|+++++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 789987764
No 6
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.9e-55 Score=546.97 Aligned_cols=202 Identities=22% Similarity=0.248 Sum_probs=162.0
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESL 945 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l 945 (1436)
.|+++|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|. .++|++|+....+..||+|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC---------CEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe---------eeEeechhcccccCCCHHHHH
Confidence 4777899999999999999999999999999999987 56899987653 478999987777789999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHH
Q 046196 946 VYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1025 (1436)
Q Consensus 946 ~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~ 1025 (1436)
.+..... ... ....++++++.+++.+..+..+ ..|||||||||+|||+|+.+|+||+|||||+|||+.+
T Consensus 352 ~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 352 ENASKDA----LST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHhhhhc----cch--hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 8642111 111 1234678899999988777664 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecC-cEEEEEcCCCcchhHHHHHhhhC
Q 046196 1026 AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRG-GEEIYVGPLGRHCSQLIKYFEGI 1090 (1436)
Q Consensus 1026 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~G-g~~~y~G~~~~~~~~~~~yf~~~ 1090 (1436)
+..+++.|+++++ .|.|||+++||++ .+...||+|++|+.+ |.....|+.......+..|+..+
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 9999999999975 5899999999976 577789999999842 34445555432223445555543
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.4e-54 Score=551.55 Aligned_cols=214 Identities=22% Similarity=0.277 Sum_probs=136.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHH---------------------HHHhcCcCCCCC----cceEEEECCccC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLL---------------------LALAGKLGKDLK----FSGRVTYNGHGM 221 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~~~G~~~ 221 (1436)
.++|+|||++|++||+++|+||||||||||+ +.+.|...|+.. ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 788887777521 256777777655
Q ss_pred CCccccceEEEecCCCC-------------------cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCc
Q 046196 222 EEFVPQRTSAYISQNDL-------------------HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPD 282 (1436)
Q Consensus 222 ~~~~~~~~~~yv~Q~~~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (1436)
... +++.++|++|... .++.+||+||+.+....... ......
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------- 171 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------- 171 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH-------
Confidence 332 2334556555432 24678999999874321100 000000
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHhCCccc-ccccccCcccccCChhhhhHHHHHHHHhcCCc--eeEEeCCCCCCChH
Q 046196 283 IDLIMKAASLEGQEKNVVTDYVLKILGLEVC-ADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR--ALFMDEISTGLDSS 359 (1436)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~--illLDEptsgLD~~ 359 (1436)
.+.. . .+.... ..+++.+||++. .|..+ ..|||||||||+|||||+.+|+ +|||||||+|||+.
T Consensus 172 ~~~~-----~--~~~~~~-~~~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 172 ARLI-----L--REIRDR-LGFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp --------------CHHH-HHHHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred HHHH-----H--HHHHHH-HHHHHHcCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 0000 0 000111 135888999764 45554 4599999999999999999988 99999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe------cCCeEEEecChhHHH
Q 046196 360 TTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL------SDGQIVYQGPRENVL 415 (1436)
Q Consensus 360 t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL------~~G~iv~~G~~~~~~ 415 (1436)
++.++.+.|+++.. .+.+||.++|+... ...||+|++| ++|++++.|+++++.
T Consensus 239 ~~~~l~~~l~~l~~--~g~tvi~vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 239 DNDRLIATLKSMRD--LGNTLIVVEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GHHHHHHHHHHHHH--TTCEEEEECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHH--cCCEEEEEeCCHHH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 99999999999864 35667778998875 4569999999 899999999988763
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-54 Score=538.57 Aligned_cols=189 Identities=20% Similarity=0.194 Sum_probs=155.3
Q ss_pred cccccceEEEeCC-----eEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCC
Q 046196 865 EFLKGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHV 939 (1436)
Q Consensus 865 ~iL~~vs~~i~~G-----e~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~l 939 (1436)
.+++|+|+++++| |++||+||||||||||+++|+|..+ +.+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------cc----CCcEEEecccccccCCc
Confidence 3688899999888 7899999999999999999999987 456752 11 23589999987766678
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 046196 940 TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1019 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTs 1019 (1436)
||+|++... .+. ... ....++++++.+++.+..+.. +..|||||||||+|||+|+.+|+||+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQE-----VQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSB-----SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--ccc---cHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 211 111 123467899999999887776 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhCeEEEEecC-cEEEEEcCCCc
Q 046196 1020 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRG-GEEIYVGPLGR 1078 (1436)
Q Consensus 1020 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G-g~~~y~G~~~~ 1078 (1436)
|||+.++..+++.|+++. +.|.|||+++||++ .+...+||+++|+++ |+++..|++.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPES 556 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHH
Confidence 999999999999999986 45999999999976 577789999999852 78888898743
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.2e-41 Score=432.34 Aligned_cols=196 Identities=26% Similarity=0.406 Sum_probs=146.0
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHH---------HhHcCCCC-CC---cee------EEEEECCccCCccc-----
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-GG---YVS------GSITISGYPKNQET----- 921 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl---------~~L~g~~~-~~---~~~------G~i~i~g~~~~~~~----- 921 (1436)
.|+|||++|++|++++|+|+||||||||+ +.+.+... .+ ..+ +.+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 34433221 00 122 34566655432100
Q ss_pred ---------------------------------------ccceEEEeecCCCCCC-------------------------
Q 046196 922 ---------------------------------------FARISGYCEQTDIHSP------------------------- 937 (1436)
Q Consensus 922 ---------------------------------------~~~~~gyv~q~~~~~~------------------------- 937 (1436)
..+..|++.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012367776655544
Q ss_pred -------CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-
Q 046196 938 -------HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANP- 1009 (1436)
Q Consensus 938 -------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p- 1009 (1436)
.+||.|++.|... . .....+.++++.+||.... .+.+ +..|||||||||.|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 3678888876431 1 1223467889999996532 2222 4689999999999999999876
Q ss_pred --CcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 046196 1010 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK-----RGGEEIYVGPL 1076 (1436)
Q Consensus 1010 --~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~~~y~G~~ 1076 (1436)
+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|+|++|. +||++++.|++
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999888999999999964 567799999993 47999999985
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.4e-41 Score=394.16 Aligned_cols=219 Identities=24% Similarity=0.313 Sum_probs=190.3
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.+... .....+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 23 ~mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~ 91 (366)
T 3tui_C 23 HMIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQE 91 (366)
T ss_dssp CCEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred ceEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 358999998877421 123569999999999999999999999999999999999987 579999999998
Q ss_pred CCcc------cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046196 917 KNQE------TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSG 990 (1436)
Q Consensus 917 ~~~~------~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~ 990 (1436)
+... ..++.+||++|+..+++.+||+||+.|....+ ..+.++.+++++++++.+||.+..+.. +.+
T Consensus 92 i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~ 163 (366)
T 3tui_C 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSN 163 (366)
T ss_dssp CSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCC-----TTT
T ss_pred CCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhh
Confidence 7432 23567999999999999999999999987654 234566677899999999999887765 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ .+...||+|++|++ |+
T Consensus 164 LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~ 241 (366)
T 3tui_C 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GE 241 (366)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999754 999999999976 57788999999996 79
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 242 iv~~g~~ 248 (366)
T 3tui_C 242 LIEQDTV 248 (366)
T ss_dssp EEECCBH
T ss_pred EEEEcCH
Confidence 9999975
No 11
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.9e-40 Score=388.80 Aligned_cols=207 Identities=21% Similarity=0.307 Sum_probs=180.7
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEEecCCCCc
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAYISQNDLH 239 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~~~~ 239 (1436)
..++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 356999999999999999999999999999999999999998 9999999999876543 3569999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.|+.+..+... .+...+++.+|+.+||++.++..+
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~- 161 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP- 161 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCT-
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCCh-
Confidence 999999999999876543210 112234677899999998777555
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
..|||||||||+|||||+.+|++|||||||||||+.++.+|++.|+++.+.. +.+|+.++|+..++.++||+|++
T Consensus 162 ----~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 162 ----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp ----TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999986543 56677789999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 046196 400 LSDGQIVYQGPRENVL 415 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~ 415 (1436)
|++|+++++|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999885
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.9e-40 Score=371.43 Aligned_cols=219 Identities=23% Similarity=0.347 Sum_probs=183.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++.. ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 5788888776421 112469999999999999999999999999999999999987 57999999998864
Q ss_pred ccc-------ccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCC
Q 046196 919 QET-------FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR-EALVGLPGVSG 990 (1436)
Q Consensus 919 ~~~-------~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~-~~~~g~~~~~~ 990 (1436)
... .++.+||++|++.+++.+||+||+.+....+.......++..+.+.++++.+++.+.. +.. +..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 321 1245999999999999999999999876554222334556667788999999997643 544 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ....+|++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4588999999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 223 i~~~~~~ 229 (235)
T 3tif_A 223 VEREEKL 229 (235)
T ss_dssp EEEEEEC
T ss_pred EEEEcCh
Confidence 9888875
No 13
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.1e-40 Score=387.19 Aligned_cols=207 Identities=22% Similarity=0.372 Sum_probs=178.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC----CCccc-cceEEEecCCCCcCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM----EEFVP-QRTSAYISQNDLHIG 241 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~----~~~~~-~~~~~yv~Q~~~~~~ 241 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++ ....+ ++.+|||+|+..+++
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999998 99999999987 22222 367999999999999
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
.+||+||+.|+.+..+... .+...+++.+++.+||++..|..+
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~--- 136 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYP--- 136 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCG---
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCCh---
Confidence 9999999999865433211 011234567899999998877555
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
..|||||||||+|||||+.+|++|||||||||||+.++.++.+.++++.+. .+++++.++|+..++..+||+|++|+
T Consensus 137 --~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 137 --HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA-NGKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp --GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 469999999999999999999999999999999999999999988887654 35667779999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 046196 402 DGQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~ 416 (1436)
+|+++..|+++++.+
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998854
No 14
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4e-40 Score=388.67 Aligned_cols=207 Identities=24% Similarity=0.364 Sum_probs=181.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-ceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-RTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+. +.+|||+|+..+++.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999998 99999999998765543 679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+... .+...+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p-----~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKP-----KA 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hH
Confidence 999999876543210 112234677899999998776554 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++.+.. ++++|.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986544 55666689999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999999854
No 15
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=8.1e-40 Score=418.85 Aligned_cols=195 Identities=28% Similarity=0.381 Sum_probs=148.4
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHc-CC---------CCCC---ceeE------EEEECCccCCccc-----
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GR---------KTGG---YVSG------SITISGYPKNQET----- 921 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~-g~---------~~~~---~~~G------~i~i~g~~~~~~~----- 921 (1436)
.|+|||++|++||++||+|+||||||||+++|. |. ..++ ...| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999863 21 0112 2234 5889988763110
Q ss_pred -----------------ccceEEEeecCCCCC----------------------C-------------------------
Q 046196 922 -----------------FARISGYCEQTDIHS----------------------P------------------------- 937 (1436)
Q Consensus 922 -----------------~~~~~gyv~q~~~~~----------------------~------------------------- 937 (1436)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013357776642221 1
Q ss_pred -------CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 046196 938 -------HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSGLSTEQRKRLTIAVELVANP 1009 (1436)
Q Consensus 938 -------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p 1009 (1436)
.+||.|++.|... . .. ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 4678888876321 1 11 223578899999986 44444 3579999999999999999865
Q ss_pred ---CcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 046196 1010 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK-----RGGEEIYVGPL 1076 (1436)
Q Consensus 1010 ---~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~~~y~G~~ 1076 (1436)
+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|+|++|. ++|++++.|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999965 457899999995 46899998875
No 16
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.5e-40 Score=379.27 Aligned_cols=215 Identities=25% Similarity=0.385 Sum_probs=185.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ ++..+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 588999988763 12349999999999999999999999999999999999987 5799999999987
Q ss_pred C--c---ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046196 918 N--Q---ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 918 ~--~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L 991 (1436)
. . ..+++.+||++|++. .+..+||+||+.|..... ..+.++..++++++++.++|.+..+..+ ..|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 1 124567999999863 445799999999987543 2345566677999999999998887764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ ++|+|||++||+++ .+...+|++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999987 46778999999996 799
Q ss_pred EEEcCC
Q 046196 1071 IYVGPL 1076 (1436)
Q Consensus 1071 ~y~G~~ 1076 (1436)
++.|+.
T Consensus 223 ~~~g~~ 228 (275)
T 3gfo_A 223 ILQGNP 228 (275)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999985
No 17
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.9e-40 Score=391.33 Aligned_cols=214 Identities=26% Similarity=0.392 Sum_probs=189.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. +..+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 377888887762 3569999999999999999999999999999999999987 5799999999987
Q ss_pred Ccc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
... ..++.+|||+|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+.. +.+||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----p~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCC-----GGGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhHCCHHHH
Confidence 532 23467999999999999999999999987664 245566677899999999999888776 457999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||||||+..+..+++.|+++.++ |.|||++|||++ ++..++|+|++|++ |+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeC
Confidence 9999999999999999999999999999999999999999765 999999999976 68889999999996 79999997
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 218 ~ 218 (381)
T 3rlf_A 218 P 218 (381)
T ss_dssp H
T ss_pred H
Confidence 5
No 18
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.4e-40 Score=368.12 Aligned_cols=213 Identities=23% Similarity=0.311 Sum_probs=182.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378888887662 2459999999999999999999999999999999999987 5699999999886
Q ss_pred Ccc------ccc-ceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046196 918 NQE------TFA-RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSG 990 (1436)
Q Consensus 918 ~~~------~~~-~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~ 990 (1436)
... .++ +.+||++|++.+++.+||+||+.+....+ ....++..+.++++++.+++.+..+..+ ..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YE 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 431 122 56999999999999999999999876543 1233444567899999999988877653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ....+|++++|++ |++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~v~~l~~-G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMKD-GKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--HHTTSSEEEEEET-TEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999877999999999965 3488999999986 789
Q ss_pred EEEcCC
Q 046196 1071 IYVGPL 1076 (1436)
Q Consensus 1071 ~y~G~~ 1076 (1436)
++.|+.
T Consensus 218 ~~~g~~ 223 (224)
T 2pcj_A 218 VGEITR 223 (224)
T ss_dssp EEEEEC
T ss_pred EEEeee
Confidence 988863
No 19
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.2e-40 Score=374.57 Aligned_cols=214 Identities=27% Similarity=0.375 Sum_probs=183.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 388999988762 2459999999999999999999999999999999999987 5699999999876
Q ss_pred C--c---ccccceEEEeecCCCCCCCCcHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046196 918 N--Q---ETFARISGYCEQTDIHSPHVTVYESLVYSA-WLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 918 ~--~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L 991 (1436)
. . ..+++.+||++|++.+++.+||+||+.+.. ... ..+.++..+.++++++.++|.+..+.. +..|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAY-----PDSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----hhhC
Confidence 3 1 123456999999999999999999999864 322 223344456789999999998877765 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 46678999999996 7899
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
+.|+.
T Consensus 239 ~~g~~ 243 (263)
T 2olj_A 239 EEGKP 243 (263)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88874
No 20
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.3e-40 Score=390.30 Aligned_cols=214 Identities=25% Similarity=0.415 Sum_probs=185.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 478888887762 3569999999999999999999999999999999999987 5799999999876
Q ss_pred ----Cc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 918 ----NQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 918 ----~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
.. ...++.+|||+|+..++|++||+||+.|+...+ ....++.+++++++++.++|.+..+..+ .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 22 234567999999999999999999999875443 2234556677899999999998888764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
|||||||+|||||+.+|++|+|||||||||+..+..+++.|+++. +.|.|||++|||.+ ++..++|+|++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999888765 56999999999976 67889999999996 7999
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
..|++
T Consensus 219 ~~g~~ 223 (359)
T 3fvq_A 219 QTASP 223 (359)
T ss_dssp EEECH
T ss_pred EEeCH
Confidence 99985
No 21
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.8e-40 Score=374.86 Aligned_cols=214 Identities=22% Similarity=0.293 Sum_probs=183.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 478899887762 2459999999999999999999999999999999999987 5699999999886
Q ss_pred Cc----------------ccccceEEEeecCCCCCCCCcHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCccc-c
Q 046196 918 NQ----------------ETFARISGYCEQTDIHSPHVTVYESLVYSA-WLRLPPEVDSDTRKMFVEEVMELVELNPI-R 979 (1436)
Q Consensus 918 ~~----------------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-~ 979 (1436)
.. ...++.+||++|++.+++.+||+||+.+.. ..+ ..+.++.++.++++++.++|.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 123456999999999999999999999864 322 22334445678999999999887 7
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhC
Q 046196 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1059 (1436)
Q Consensus 980 ~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1059 (1436)
+.. +..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|
T Consensus 148 ~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 765 3579999999999999999999999999999999999999999999999877999999999975 4667899
Q ss_pred eEEEEecCcEEEEEcCC
Q 046196 1060 ELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1060 ~v~~l~~Gg~~~y~G~~ 1076 (1436)
++++|++ |+++..|+.
T Consensus 222 ~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 222 HVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEEET-TEEEEEECH
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999996 789988874
No 22
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.6e-40 Score=370.78 Aligned_cols=214 Identities=26% Similarity=0.354 Sum_probs=184.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 488999987762 2459999999999999999999999999999999999987 5699999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046196 918 NQ--ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 918 ~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGq 995 (1436)
.. ...++.+||++|++.+++.+||+||+.+...... ...++..+.++++++.++|.+..++.+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 2345679999999999999999999998764431 233344456889999999998877763 5799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999975 45667999999996 78888887
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.5e-40 Score=379.22 Aligned_cols=208 Identities=23% Similarity=0.372 Sum_probs=167.9
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++.++ ..
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-ND 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SE
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccC-cc
Confidence 45999999999999999999999999999999999999998 9999999999877643 35799999998876 56
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+|||.|+..... .+.+.+++...+.. ..+ -.+++..+|.+|+.+
T Consensus 143 Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~~l~------~~i--~~lp~gl~t~~~~~g- 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG-------------------------NDEVEAAAQAAGIH------DAI--MAFPEGYRTQVGERG- 188 (306)
T ss_dssp EHHHHHHTTSTTCC-------------------------HHHHHHHHHHHTCH------HHH--HHSTTGGGCEESTTS-
T ss_pred cHHHHHHhhcccCC-------------------------HHHHHHHHHHhCcH------HHH--HhccchhhhHhcCCc-
Confidence 99999999743210 01111111111110 111 135667789998654
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.+|||||||||+|||||+.+|+||||||||||||+.+...|.+.|+++.. + .++|+++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~-~Tvi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--N-RTTIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--T-SEEEEECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--C-CEEEEEEcChHHHHc-CCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998743 3 455557888777655 9999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+|+++|+++++++
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
No 24
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=5.5e-40 Score=372.95 Aligned_cols=217 Identities=23% Similarity=0.277 Sum_probs=183.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 488999987762 2459999999999999999999999999999999999987 5699999999886
Q ss_pred Ccc----cccceEEEeecCCCCCCCCcHHHHHHHHHHh-cCCC---------CCCHHHHHHHHHHHHHHcCCcccccccc
Q 046196 918 NQE----TFARISGYCEQTDIHSPHVTVYESLVYSAWL-RLPP---------EVDSDTRKMFVEEVMELVELNPIREALV 983 (1436)
Q Consensus 918 ~~~----~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l-~~~~---------~~~~~~~~~~v~~vl~~l~l~~~~~~~~ 983 (1436)
... ..++.+||++|++.+++.+||+||+.+.... .... ....++.++.++++++.+++.+..+..+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 1345699999999899999999999886532 1010 0122334566889999999988777764
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEE
Q 046196 984 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLL 1063 (1436)
Q Consensus 984 g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1063 (1436)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 579999999999999999999999999999999999999999999999877999999999987 46778999999
Q ss_pred EecCcEEEEEcCC
Q 046196 1064 MKRGGEEIYVGPL 1076 (1436)
Q Consensus 1064 l~~Gg~~~y~G~~ 1076 (1436)
|++ |++++.|+.
T Consensus 226 l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 226 MFN-GQIIAEGRG 237 (257)
T ss_dssp EET-TEEEEEEES
T ss_pred EEC-CEEEEEeCH
Confidence 996 789988875
No 25
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.3e-39 Score=382.36 Aligned_cols=215 Identities=25% Similarity=0.395 Sum_probs=187.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ +++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 588889887651 23458999999999999999999999999999999999987 5799999999886
Q ss_pred Cc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
.. ...++.+||++|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+... .+||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 234567999999999999999999999987654 2344555677899999999998887763 57999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998755 999999999975 57788999999996 79999887
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 230 ~ 230 (355)
T 1z47_A 230 P 230 (355)
T ss_dssp H
T ss_pred H
Confidence 5
No 26
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=7.6e-40 Score=373.53 Aligned_cols=207 Identities=24% Similarity=0.327 Sum_probs=175.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc-----cccceEEEecCCC-CcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF-----VPQRTSAYISQND-LHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~-~~~ 240 (1436)
..+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.+|||+|++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999998 99999999987421 1235799999986 345
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.|+....+... .+...+++.+++.+||++..+..+
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~-- 141 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPT-- 141 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBG--
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCc--
Confidence 68999999999865432110 011234567899999988777655
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+.. +++|+.++|+..++.++||+|++|
T Consensus 142 ---~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 142 ---HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp ---GGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEE
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999986333 556667899999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 046196 401 SDGQIVYQGPRENVLE 416 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~~ 416 (1436)
++|+++++|+++++.+
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 218 KEGRVILQGNPKEVFA 233 (275)
T ss_dssp ETTEEEEEECHHHHTH
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998754
No 27
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-39 Score=379.41 Aligned_cols=207 Identities=25% Similarity=0.368 Sum_probs=179.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999866544 3679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+.. + .+...+++.+++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------K------------------------DEVEKRVVEIARKLLIDNLLDRKP-----TQ 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------H------------------------HHTTHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 99999986543210 0 011234667899999988777554 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL-GITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 45566689999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
No 28
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.1e-39 Score=366.70 Aligned_cols=204 Identities=26% Similarity=0.352 Sum_probs=177.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 45999999999999999999999999999999999999998 9999999999876543 25699999999888899
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++...... .+....++.+++.+||.+..+..+
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 139 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDY----- 139 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBG-----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCc-----
Confidence 999999997543210 001124566899999988777655
Q ss_pred ccCChhhhhHHHHHHHHhc------CCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 324 RGISGGQRKRLTTGEMLVG------PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~------~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
..|||||||||+|||||+. +|++|||||||+|||+.++.++.+.|+++.+. ++.+|+.++|+..++..+||+|
T Consensus 140 ~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEE
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEE
Confidence 4699999999999999999 99999999999999999999999999998653 4667777999999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++|+++++|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999999874
No 29
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=5.2e-39 Score=412.85 Aligned_cols=195 Identities=26% Similarity=0.367 Sum_probs=144.8
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHh-HcCCC-------CC----------------CceeE-------EEEECC
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDV-LAGRK-------TG----------------GYVSG-------SITISG 914 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~-L~g~~-------~~----------------~~~~G-------~i~i~g 914 (1436)
.|+|||++|++||++||+|+||||||||++. |+|.. .+ .+.+| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999996 66431 11 12467 789999
Q ss_pred ccCCcccc----------------------cceEEEeec----------------------CCCCCC-------------
Q 046196 915 YPKNQETF----------------------ARISGYCEQ----------------------TDIHSP------------- 937 (1436)
Q Consensus 915 ~~~~~~~~----------------------~~~~gyv~q----------------------~~~~~~------------- 937 (1436)
.++..... .+..||.++ +..+.+
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 87632110 011122211 111111
Q ss_pred -------------------CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHH
Q 046196 938 -------------------HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-REALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 938 -------------------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~~~LSgGqrq 997 (1436)
.+|+.|++.|.. .. ...+.+.++++.++|... .+.. +..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~---~~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE---SAIFRALDTLREVGLGYLRLGQP-----ATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS---HHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc---hHHHHHHHHHHHcCCCcccccCC-----cccCCHHHHH
Confidence 245666554421 11 122357899999999763 2433 4579999999
Q ss_pred HHHHHHHHhhC---CCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe-----cCcE
Q 046196 998 RLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK-----RGGE 1069 (1436)
Q Consensus 998 Rl~iA~aL~~~---p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~ 1069 (1436)
||.||++|+.+ |+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|+|++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~--~i~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ--VVAASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCCCCCCCE
Confidence 99999999996 7999999999999999999999999999888999999999965 348899999995 4689
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
+++.|+.
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999874
No 30
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.3e-39 Score=364.50 Aligned_cols=206 Identities=20% Similarity=0.333 Sum_probs=174.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC--Ccc---ccceEEEecCCCCcCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGME--EFV---PQRTSAYISQNDLHIG 241 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~~~~~~ 241 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 35999999999999999999999999999999999999998 999999998874 111 1346999999998899
Q ss_pred CCCHHHHHHhhh-hhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 242 EMTVRETLAFSA-RCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 242 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
.+||+||+.|+. +..+.. + .+....++.+++.+||++..+..+
T Consensus 114 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~-- 157 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP----------R------------------------EKAEAKAMELLDKVGLKDKAHAYP-- 157 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCG--
T ss_pred CCCHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCchHhcCCh--
Confidence 999999999864 322110 0 001124567899999988777555
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. +++|+.++|+..++.++||+|++|
T Consensus 158 ---~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 158 ---DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp ---GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred ---hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 566777899999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 046196 401 SDGQIVYQGPRENVLE 416 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~~ 416 (1436)
++|++++.|+++++.+
T Consensus 233 ~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 233 DGGYIIEEGKPEDLFD 248 (263)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999988753
No 31
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-39 Score=383.05 Aligned_cols=213 Identities=27% Similarity=0.387 Sum_probs=185.7
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+ +++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKF-------------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEES-------------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6788887665 23469999999999999999999999999999999999987 57999999998864
Q ss_pred cc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 QE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
.. ..++.+||++|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+... .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999986554 2334555677899999999998887763 579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998754 999999999975 57789999999996 789998875
No 32
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.9e-39 Score=379.76 Aligned_cols=207 Identities=26% Similarity=0.407 Sum_probs=179.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999998866544 3679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+.. + .+...+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAP----------R------------------------EEIDKKVREVAKMLHIDKLLNRYP-----WQ 133 (362)
T ss_dssp HHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhhCCh-----hh
Confidence 99999986543211 0 011234567899999988776554 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL-GITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 45566689999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
+..|+++++.+
T Consensus 213 ~~~g~~~~~~~ 223 (362)
T 2it1_A 213 LQVGTPDEVYY 223 (362)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998853
No 33
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.5e-39 Score=379.93 Aligned_cols=207 Identities=27% Similarity=0.392 Sum_probs=179.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999998865443 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+.. + .+...+++++++.+||++..|..+ ..
T Consensus 105 ~eni~~~l~~~~~~----------~------------------------~~~~~~v~~~l~~~gL~~~~~r~~-----~~ 145 (355)
T 1z47_A 105 YDNVSFGLREKRVP----------K------------------------DEMDARVRELLRFMRLESYANRFP-----HE 145 (355)
T ss_dssp HHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhcCCc-----cc
Confidence 99999986543211 0 011234667899999998777554 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM-GVTSVFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 45666689999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
+..|+++++.+
T Consensus 225 ~~~g~~~~l~~ 235 (355)
T 1z47_A 225 EQFGTPEEVYE 235 (355)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998853
No 34
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-39 Score=383.37 Aligned_cols=213 Identities=26% Similarity=0.376 Sum_probs=184.2
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. ++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 67888877652 3469999999999999999999999999999999999987 57999999998874
Q ss_pred cc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 QE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
.. ..++.+||++|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+... .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999875432 2223344567899999999998887764 579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 999999999975 57789999999996 789999875
No 35
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.2e-39 Score=370.96 Aligned_cols=212 Identities=22% Similarity=0.317 Sum_probs=183.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 588999988763 3569999999999999999999999999999999999987 5699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
.. ...++.++|++|+..+++.+||+||+.+..... ...+.++.++++++.+++.+..+..+ ..||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 53 234567899999998888999999999875432 12233456889999999998887764 579999
Q ss_pred HHHHHHHHHHHhh------CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 995 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 995 qrqRl~iA~aL~~------~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
|||||+|||||+. +|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+...+|++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999976 46778999999996
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 224 G~i~~~g~~ 232 (266)
T 4g1u_C 224 GKLVACGTP 232 (266)
T ss_dssp TEEEEEECH
T ss_pred CEEEEEcCH
Confidence 799999986
No 36
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5e-39 Score=359.97 Aligned_cols=207 Identities=21% Similarity=0.239 Sum_probs=170.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-------ceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-------RTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q~~~~ 239 (1436)
.++|+|||+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++...... +.+|||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999999998 99999999988765432 359999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccc-cccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCA-DTMV 318 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~v 318 (1436)
++.+||+||+.++......... .. .+....+..+++.+||.+.. +..
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------SG------------------------EERRKRALECLKMAELEERFANHK- 142 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------CH------------------------HHHHHHHHHHHHHTTCCGGGTTCC-
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------CH------------------------HHHHHHHHHHHHHCCCChhhhhCC-
Confidence 9999999999997643211000 00 01122355678999998643 544
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++|+.++|+.. ..++||+|+
T Consensus 143 ----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 143 ----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED-GKTVVVVTHDIN-VARFGERII 216 (235)
T ss_dssp ----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHH-HHTTSSEEE
T ss_pred ----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEcCCHH-HHHhCCEEE
Confidence 45699999999999999999999999999999999999999999999986533 455666788876 568999999
Q ss_pred EecCCeEEEecChhHH
Q 046196 399 LLSDGQIVYQGPRENV 414 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~ 414 (1436)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999988765
No 37
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.3e-39 Score=358.03 Aligned_cols=200 Identities=25% Similarity=0.320 Sum_probs=169.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~~ 239 (1436)
.++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 45999999999999999999999999999999999999998 9999999998865432 1469999999998
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.++....+.. + .+....++.+++.+||++..+..+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKP----------K------------------------KEAKERGEYLLSELGLGDKLSRKP- 138 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTCCG-
T ss_pred CCCCCHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 99999999999875432210 0 001123566899999988777655
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+. +++|+.++|+...+ ++||+|++
T Consensus 139 ----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 139 ----YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG--GTSIVMVTHERELA-ELTHRTLE 211 (224)
T ss_dssp ----GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHH-TTSSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHH-HhCCEEEE
Confidence 469999999999999999999999999999999999999999999998653 55666678887766 89999999
Q ss_pred ecCCeEEEecCh
Q 046196 400 LSDGQIVYQGPR 411 (1436)
Q Consensus 400 L~~G~iv~~G~~ 411 (1436)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
No 38
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.5e-39 Score=383.73 Aligned_cols=213 Identities=26% Similarity=0.366 Sum_probs=185.7
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. ++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 67888877652 3469999999999999999999999999999999999987 57999999998753
Q ss_pred c-------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046196 919 Q-------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 919 ~-------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L 991 (1436)
. ...++.+|||+|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+..+ .+|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 123467999999999999999999999987654 2344555677899999999998887763 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999998754 999999999975 57789999999996 799
Q ss_pred EEEcCC
Q 046196 1071 IYVGPL 1076 (1436)
Q Consensus 1071 ~y~G~~ 1076 (1436)
+..|+.
T Consensus 219 ~~~g~~ 224 (372)
T 1g29_1 219 QQVGSP 224 (372)
T ss_dssp EEEECH
T ss_pred EEeCCH
Confidence 999975
No 39
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-39 Score=365.16 Aligned_cols=213 Identities=22% Similarity=0.323 Sum_probs=179.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 478899887762 2459999999999999999999999999999999999987 5699999999887
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCC
Q 046196 918 NQE---T-FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE-LNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 918 ~~~---~-~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~-l~~~~~~~~g~~~~~~LS 992 (1436)
... . .++.+||++|++.+++.+||+||+.+..... ...++..+.++++++.++ +.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 432 1 2345999999999999999999998864211 112333456788999994 87766655 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 56788999999996 78888
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 220 ~g~~ 223 (240)
T 1ji0_A 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred EcCH
Confidence 8864
No 40
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-39 Score=365.76 Aligned_cols=206 Identities=19% Similarity=0.256 Sum_probs=174.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC----------cc------ccceE
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE----------FV------PQRTS 230 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------~~------~~~~~ 230 (1436)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 35999999999999999999999999999999999999998 9999999988751 11 13569
Q ss_pred EEecCCCCcCCCCCHHHHHHhhh-hhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhC
Q 046196 231 AYISQNDLHIGEMTVRETLAFSA-RCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILG 309 (1436)
Q Consensus 231 ~yv~Q~~~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 309 (1436)
+||+|++.+++.+||+||+.|+. +..+.. + .+....++.+++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------HDARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H------------------------HHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC----------H------------------------HHHHHHHHHHHHHcC
Confidence 99999999999999999999864 222110 0 001124567899999
Q ss_pred Cccc-ccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 046196 310 LEVC-ADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP 388 (1436)
Q Consensus 310 L~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 388 (1436)
|++. .+..+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. +++|+.++|+..
T Consensus 142 L~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEECSCHH
T ss_pred CCchhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 9887 77555 469999999999999999999999999999999999999999999998653 556666899999
Q ss_pred hHHHhcccEEEecCCeEEEecChhHHHH
Q 046196 389 ETYELFDDLILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 389 ~~~~~~D~iivL~~G~iv~~G~~~~~~~ 416 (1436)
++..+||+|++|++|++++.|+++++.+
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999988753
No 41
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.7e-38 Score=408.26 Aligned_cols=195 Identities=26% Similarity=0.373 Sum_probs=145.6
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHc-C----CC-----CCCc---eeE------EEEECCccCCccc-----
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----RK-----TGGY---VSG------SITISGYPKNQET----- 921 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~-g----~~-----~~~~---~~G------~i~i~g~~~~~~~----- 921 (1436)
.|+|||++|++|+++||+|+||||||||+++|. | .. .++. ..| .|.+++.++....
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 699999999999999999999999999999853 2 11 1111 123 3667776652100
Q ss_pred -----------------ccceEEEeecCCCCC----------------------C-------------------------
Q 046196 922 -----------------FARISGYCEQTDIHS----------------------P------------------------- 937 (1436)
Q Consensus 922 -----------------~~~~~gyv~q~~~~~----------------------~------------------------- 937 (1436)
..+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 013346666642211 1
Q ss_pred -------CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 046196 938 -------HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSGLSTEQRKRLTIAVELVANP 1009 (1436)
Q Consensus 938 -------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p 1009 (1436)
.+||.|++.|... . .. ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------I-AG--VHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------C-HH--HHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------c-hH--HHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 3577888776321 1 11 223568899999976 34443 4579999999999999999875
Q ss_pred ---CcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 046196 1010 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK-----RGGEEIYVGPL 1076 (1436)
Q Consensus 1010 ---~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~~~y~G~~ 1076 (1436)
+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|+|++|. ++|++++.|+.
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999965 457899999995 46899999975
No 42
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8.1e-39 Score=379.31 Aligned_cols=207 Identities=27% Similarity=0.390 Sum_probs=178.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC------ccc-cceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE------FVP-QRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~~~-~~~~~yv~Q~~~~ 239 (1436)
.++|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..+ ++.+|||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 45999999999999999999999999999999999999998 9999999988754 332 4679999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.|+.+..+.. + .+...+++.+++.+||++..+..+
T Consensus 93 ~~~ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~- 137 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVP----------R------------------------QEIDQRVREVAELLGLTELLNRKP- 137 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred CCCCCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCchHhcCCc-
Confidence 99999999999986543211 0 011234567899999988777554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
..|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++
T Consensus 138 ----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHHhCCEEEE
Confidence 5699999999999999999999999999999999999999999999986543 45566689999999999999999
Q ss_pred ecCCeEEEecChhHHHH
Q 046196 400 LSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~~ 416 (1436)
|++|+++..|+++++.+
T Consensus 213 l~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999998853
No 43
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=6.4e-39 Score=379.26 Aligned_cols=207 Identities=24% Similarity=0.352 Sum_probs=172.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999998866544 3679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+.. + .+...+++.+++.+||++..+..+ ..
T Consensus 101 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFP----------K------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQ 141 (372)
T ss_dssp HHHHHTTCC--CCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TT
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 99999986433211 0 011234567899999998777554 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 45566689999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
+..|+++++.+
T Consensus 221 ~~~g~~~~l~~ 231 (372)
T 1v43_A 221 LQIGSPTEVYL 231 (372)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
No 44
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.6e-39 Score=383.10 Aligned_cols=213 Identities=26% Similarity=0.394 Sum_probs=185.2
Q ss_pred eEEecccceeecchhhhccCCCCcccc--ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLE--FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
++++|+++.+. ++. +|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 67888877652 245 8999999999999999999999999999999999987 579999999987
Q ss_pred CCc------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046196 917 KNQ------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSG 990 (1436)
Q Consensus 917 ~~~------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~ 990 (1436)
+.. ...++.+||++|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+..+ .+
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 632 234577999999999999999999999876433 2344555677899999999998887764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 999999999975 57788999999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 219 i~~~g~~ 225 (353)
T 1oxx_K 219 LVQVGKP 225 (353)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9998875
No 45
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=7.1e-39 Score=363.82 Aligned_cols=216 Identities=26% Similarity=0.352 Sum_probs=173.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
.++|+|||+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 35999999999999999999999999999999999999998 9999999998865432 2469999999988999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.++......+ ..... ........ ..+....++.+++.+||++..++.+
T Consensus 97 ~tv~enl~~~~~~~~~~----~~~~~----~~~~~~~~-------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 151 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES----PLNSL----FYKKWIPK-------------EEEMVEKAFKILEFLKLSHLYDRKA---- 151 (257)
T ss_dssp SBHHHHHHGGGTSTTSC----HHHHH----HHCSSCCC-------------CHHHHHHHHHHHHHTTCGGGTTSBG----
T ss_pred CcHHHHHHHHHhhhccC----ccccc----ccccccCC-------------HHHHHHHHHHHHHHcCCchhhCCCc----
Confidence 99999999875320000 00000 00000000 0011224567899999988777655
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++..+||+|++|++
T Consensus 152 -~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 152 -GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 45999999999999999999999999999999999999999999999865 2 56666689999999999999999999
Q ss_pred CeEEEecChhH
Q 046196 403 GQIVYQGPREN 413 (1436)
Q Consensus 403 G~iv~~G~~~~ 413 (1436)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999988
No 46
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1e-38 Score=361.02 Aligned_cols=206 Identities=25% Similarity=0.290 Sum_probs=175.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lT 244 (1436)
.++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999875421 1356999999998899999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.|+.+..+.. . .+....++.+++.+||++..++.+ .
T Consensus 105 v~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~ 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASS----------S------------------------SEIEEMVERATEIAGLGEKIKDRV-----S 145 (256)
T ss_dssp HHHHHHHHHHHHCCC----------H------------------------HHHHHHHHHHHHHHCCGGGGGSBG-----G
T ss_pred HHHHHHHHHHHcCCC----------h------------------------HHHHHHHHHHHHHCCCchHhcCCh-----h
Confidence 999999875432210 0 001123566889999998777655 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. .+++|+.++|+..++..+||++++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh--CCCEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 35666778899988889999999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988754
No 47
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.4e-39 Score=382.84 Aligned_cols=214 Identities=22% Similarity=0.363 Sum_probs=179.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 75 (372)
T 1v43_A 11 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 75 (372)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 378899887762 2459999999999999999999999999999999999987 5799999999886
Q ss_pred Ccc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
... ..++.+||++|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+.. +.+||||||
T Consensus 76 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~ 147 (372)
T 1v43_A 76 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQR 147 (372)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCH
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHH
Confidence 432 23467999999999999999999999865332 234455567789999999999888776 457999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+
T Consensus 148 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 225 (372)
T 1v43_A 148 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 225 (372)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999998765 999999999975 57789999999996 78999887
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 226 ~ 226 (372)
T 1v43_A 226 P 226 (372)
T ss_dssp H
T ss_pred H
Confidence 5
No 48
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=7.3e-39 Score=377.52 Aligned_cols=205 Identities=21% Similarity=0.305 Sum_probs=177.2
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC-----cc-ccceEEEecCCCCcCCC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE-----FV-PQRTSAYISQNDLHIGE 242 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~-----~~-~~~~~~yv~Q~~~~~~~ 242 (1436)
+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.+|||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 899999999999999999999999999999999999998 9999999988754 22 24679999999999999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.|+.+..+.. + .+...+++.+++.+||++..+..+
T Consensus 97 ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~~~~---- 138 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMS----------K------------------------EEIRKRVEEVAKILDIHHVLNHFP---- 138 (353)
T ss_dssp SCHHHHHHGGGTTSSCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCG----
T ss_pred CCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcCCh----
Confidence 99999999986543211 0 011234567899999998877554
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
..|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++
T Consensus 139 -~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 139 -RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5699999999999999999999999999999999999999999999986543 45566689999999999999999999
Q ss_pred CeEEEecChhHHHH
Q 046196 403 GQIVYQGPRENVLE 416 (1436)
Q Consensus 403 G~iv~~G~~~~~~~ 416 (1436)
|+++..|+++++.+
T Consensus 217 G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 217 GKLVQVGKPEDLYD 230 (353)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999998853
No 49
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.8e-39 Score=376.77 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=176.2
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999998 9999999998865433 367999999999999999999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
|+.|+.+..+... . .+++.+++.+||++..|..+ ..||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~-----~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNP-----LTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCG-----GGSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 9999864322100 0 23566899999998877554 5699
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~ 407 (1436)
|||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986543 5566668999999999999999999999999
Q ss_pred ecChhHHH
Q 046196 408 QGPRENVL 415 (1436)
Q Consensus 408 ~G~~~~~~ 415 (1436)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999884
No 50
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-38 Score=357.11 Aligned_cols=204 Identities=22% Similarity=0.346 Sum_probs=171.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
.++|+|||+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 35999999999999999999999999999999999999998 9999999998865432 2359999999998999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhC-CcccccccccCc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILG-LEVCADTMVGDE 321 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 321 (1436)
+||+||+.++.... ... . +....++.+++.++ |++..+..+
T Consensus 96 ltv~enl~~~~~~~-~~~--------------------~--------------~~~~~~~~~l~~~~~l~~~~~~~~--- 137 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KDK--------------------E--------------GIKRDLEWIFSLFPRLKERLKQLG--- 137 (240)
T ss_dssp SBHHHHHHGGGTTC-CCS--------------------S--------------HHHHHHHHHHHHCHHHHTTTTSBS---
T ss_pred CcHHHHHHHhhhcC-CCH--------------------H--------------HHHHHHHHHHHHcccHhhHhcCCh---
Confidence 99999999863211 000 0 01123455678884 877666544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .+++|+.++|+..++.++||+|++|+
T Consensus 138 --~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~--~g~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 138 --GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp --SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999864 35556668899889999999999999
Q ss_pred CCeEEEecChhHHH
Q 046196 402 DGQIVYQGPRENVL 415 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~ 415 (1436)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988774
No 51
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=6.1e-39 Score=376.62 Aligned_cols=209 Identities=22% Similarity=0.297 Sum_probs=180.8
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+ +++ +|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y-------------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKW-------------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEEC-------------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 4677777654 234 8999999999999999999999999999999999987 57999999998874
Q ss_pred c-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 Q-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
. ...++.+||++|+..++|++||+||+.|....+.. +.+ ++++++++.++|.+..+... .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 22356799999999999999999999998655421 111 56889999999998888764 579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.+ .|.|||++||+++ ++..++|++++|++ |+++..|+.
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 4999999999975 57789999999986 788888875
No 52
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1e-38 Score=364.25 Aligned_cols=217 Identities=23% Similarity=0.339 Sum_probs=179.3
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+... ....+.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRG--------TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTT--------STTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 6788888766300 0001459999999999999999999999999999999999987 56999999998875
Q ss_pred cccccceEEEeecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCCCCHHH
Q 046196 919 QETFARISGYCEQTD-IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN--PIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 919 ~~~~~~~~gyv~q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~--~~~~~~~g~~~~~~LSgGq 995 (1436)
...+++.+||++|++ ..++.+||+||+.+...... ..++..++++++++.++|. +..+..+ ..|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 433456799999985 56678999999998643221 1122234578999999998 7777653 5799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999777999999999987 46668999999996 78888886
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-38 Score=357.51 Aligned_cols=208 Identities=23% Similarity=0.327 Sum_probs=176.7
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. + +|+|||+++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46777776652 1 49999999999 9999999999999999999999987 56999999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 Q-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
. ...++.+||++|++.+++.+||+||+.|....+ .....++.++++++.+++.+..+..+ ..|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999998754221 11222556889999999988777654 579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998754 899999999975 46788999999996 789988874
No 54
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.2e-38 Score=360.33 Aligned_cols=216 Identities=26% Similarity=0.280 Sum_probs=173.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCC--CCCCceeEEEEECCcc
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYVSGSITISGYP 916 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~--~~~~~~~G~i~i~g~~ 916 (1436)
++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|. .+ +.+|+|.++|.+
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~ 68 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEE
Confidence 77888887762 24599999999999999999999999999999999997 44 679999999988
Q ss_pred CCcc---cc-cceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-cccccccccCCCCCC-
Q 046196 917 KNQE---TF-ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NPIREALVGLPGVSG- 990 (1436)
Q Consensus 917 ~~~~---~~-~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l-~~~~~~~~g~~~~~~- 990 (1436)
+... .. ++.++|++|++.+++.+||+|++.+............++..+.++++++.+++ .+..+..+ ..
T Consensus 69 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~ 143 (250)
T 2d2e_A 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEG 143 (250)
T ss_dssp CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC
T ss_pred CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccC
Confidence 6432 11 23489999999999999999999886532111111233344568899999999 47777653 45
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDA-FDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~Gg~ 1069 (1436)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++ |+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~ 221 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GR 221 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999767999999999986 35555 599999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
+++.|+.
T Consensus 222 i~~~g~~ 228 (250)
T 2d2e_A 222 VVATGGP 228 (250)
T ss_dssp EEEEESH
T ss_pred EEEEeCH
Confidence 9998875
No 55
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7e-39 Score=367.00 Aligned_cols=218 Identities=25% Similarity=0.376 Sum_probs=178.8
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.+. ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 20 ~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 84 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKM 84 (279)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBC
T ss_pred ceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 3589999988762 2459999999999999999999999999999999999987 569999999987
Q ss_pred CC--c---ccccceEEEeecCCCCC--CCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046196 917 KN--Q---ETFARISGYCEQTDIHS--PHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988 (1436)
Q Consensus 917 ~~--~---~~~~~~~gyv~q~~~~~--~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~ 988 (1436)
+. . ..+++.+||++|++.+. +.+||+||+.+....... .....++..+.++++++.+++.+..+..+
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 159 (279)
T 2ihy_A 85 PGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI----- 159 (279)
T ss_dssp CC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----
T ss_pred cccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----
Confidence 64 2 23456799999986543 457999999875321000 01112333456889999999988777664
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCCHHHHHhhCeEEEEec
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|| |++||+++ ++...+|++++|++
T Consensus 160 ~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~ 238 (279)
T 2ihy_A 160 GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD 238 (279)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 5799999999999999999999999999999999999999999999997669999 99999976 46678999999986
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 239 -G~i~~~g~~ 247 (279)
T 2ihy_A 239 -GQSIQQGAV 247 (279)
T ss_dssp -TEEEEEEEH
T ss_pred -CEEEEECCH
Confidence 789998874
No 56
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.5e-38 Score=350.41 Aligned_cols=202 Identities=23% Similarity=0.355 Sum_probs=172.1
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
+|+|||+++++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 59999999999 999999999999999999999999998 9999999998754322 357999999999999999999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
|+.|+.+..+. .. ....++.+++.+||++..+..+ ..||
T Consensus 90 nl~~~~~~~~~----------~~--------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VE--------------------------RDRRVREMAEKLGIAHLLDRKP-----ARLS 128 (240)
T ss_dssp HHHTTCTTSCH----------HH--------------------------HHHHHHHHHHTTTCTTTTTCCG-----GGSC
T ss_pred HHHHHHHHcCC----------ch--------------------------HHHHHHHHHHHcCCHHHhcCCh-----hhCC
Confidence 99987432110 00 0123466789999988777555 4699
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~ 407 (1436)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH-TCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986533 4555667899999999999999999999999
Q ss_pred ecChhHHHH
Q 046196 408 QGPRENVLE 416 (1436)
Q Consensus 408 ~G~~~~~~~ 416 (1436)
.|+++++.+
T Consensus 208 ~g~~~~~~~ 216 (240)
T 2onk_A 208 KGKLKELFS 216 (240)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999988753
No 57
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=8.8e-38 Score=356.39 Aligned_cols=221 Identities=24% Similarity=0.293 Sum_probs=179.0
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+
T Consensus 19 ~~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~ 85 (267)
T 2zu0_C 19 HMLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD 85 (267)
T ss_dssp -CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE
T ss_pred ceEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 3589999988762 245999999999999999999999999999999999984222679999999987
Q ss_pred CCcc---cc-cceEEEeecCCCCCCCCcHHHHHHHHHH-hc---CCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 046196 917 KNQE---TF-ARISGYCEQTDIHSPHVTVYESLVYSAW-LR---LPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPG 987 (1436)
Q Consensus 917 ~~~~---~~-~~~~gyv~q~~~~~~~lTv~e~l~~~~~-l~---~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~ 987 (1436)
+... .. ++.++|++|++.+++.+||.|++.+... .+ .....+.++..+.++++++.+++. +..+..++
T Consensus 86 i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--- 162 (267)
T 2zu0_C 86 LLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN--- 162 (267)
T ss_dssp GGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT---
T ss_pred CCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc---
Confidence 6421 12 2348999999999999999999987541 11 111223334456788999999996 45565432
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hCeEEEEec
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDA-FDELLLMKR 1066 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~ 1066 (1436)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|++++|++
T Consensus 163 -~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~ 240 (267)
T 2zu0_C 163 -VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ 240 (267)
T ss_dssp -TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET
T ss_pred -cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC
Confidence 249999999999999999999999999999999999999999999998767999999999976 34444 899999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 241 -G~i~~~g~~ 249 (267)
T 2zu0_C 241 -GRIVKSGDF 249 (267)
T ss_dssp -TEEEEEECT
T ss_pred -CEEEEEcCH
Confidence 789999986
No 58
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-37 Score=354.51 Aligned_cols=205 Identities=24% Similarity=0.359 Sum_probs=173.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCC-CcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQND-LHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~-~~~~~lTV 245 (1436)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.....++.++|++|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999998 999999998875432345799999995 56778999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc--ccccccccCccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE--VCADTMVGDEML 323 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 323 (1436)
+||+.|+.... ... .+....++.+++.+||+ +..+..+
T Consensus 97 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~----- 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVP----- 136 (266)
T ss_dssp HHHHHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCG-----
T ss_pred HHHHHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCCh-----
Confidence 99999864321 000 00112346678999998 7776555
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. +++|+.++|+..++..+||+|++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999998653 556666889988888899999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
++++.|+++++.+
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988764
No 59
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.8e-37 Score=350.88 Aligned_cols=207 Identities=21% Similarity=0.338 Sum_probs=173.5
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.+
T Consensus 4 ~l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~----- 64 (253)
T 2nq2_C 4 ALSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIEV----- 64 (253)
T ss_dssp EEEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEEE-----
T ss_pred eEEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEE-----
Confidence 378888887662 02459999999999999999999999999999999999987 56999982
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
++.+||++|++.+++.+||+||+.+....... ......+..+.++++++.+++.+..+.. +..||||||
T Consensus 65 -----~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~ 134 (253)
T 2nq2_C 65 -----YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQR 134 (253)
T ss_dssp -----CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHH
T ss_pred -----eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHH
Confidence 35689999999988899999999986432211 0011233345688999999998877765 357999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ .+...+|++++|++ |+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCC
Confidence 9999999999999999999999999999999999999999876 999999999975 46678999999997 57 88886
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 212 ~ 212 (253)
T 2nq2_C 212 T 212 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 60
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=8.7e-38 Score=352.00 Aligned_cols=193 Identities=22% Similarity=0.331 Sum_probs=168.0
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCCCCCCCcHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
+|+|+|+++++||+++|+|||||||||||++|+|..+ +. |+|.++|.++.. ..+++.+||++|+..+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 8999999999999999999999999999999999987 56 999999987632 23456799999999889999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-------cceee
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS-------IIFMD 1015 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~-------illlD 1015 (1436)
||+.+... +. .. .+.++++++.+++.+..+.. +..||||||||++|||||+.+|+ +|+||
T Consensus 92 e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 99987421 11 11 34578999999998877765 35799999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|||+|||+.++..+++.|++++++|+|||+++|+++ .+...+|++++|++ |++++.|+.
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999777999999999975 46678999999996 788888874
No 61
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.4e-38 Score=361.98 Aligned_cols=212 Identities=26% Similarity=0.352 Sum_probs=174.3
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
...++++|+++.++ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 51 ~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCE
Confidence 34699999998873 12459999999999999999999999999999999999987 57999999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccC
Q 046196 916 PKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR-------EALVGL 985 (1436)
Q Consensus 916 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~-------~~~~g~ 985 (1436)
++.. ..+++.+|||+|++.+++ .||+||+.|+.. .... +.++++++.+++.+.. ++.+|.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV-----TAGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST-----TCCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc-----cCCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 8754 335677999999998875 699999987531 1121 2245666666665433 333443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
. +.+||||||||++|||||+.+|+||+|||||||||+.+...|++.|+++.+ ++|||+++|+++ ....+|+|++|+
T Consensus 187 ~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~aD~i~vl~ 262 (306)
T 3nh6_A 187 R-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS--TVVNADQILVIK 262 (306)
T ss_dssp T-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH--HHHTCSEEEEEE
T ss_pred C-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH--HHHcCCEEEEEE
Confidence 2 468999999999999999999999999999999999999999999999864 799999999975 345599999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 263 ~-G~iv~~G~~ 272 (306)
T 3nh6_A 263 D-GCIVERGRH 272 (306)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999985
No 62
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.2e-37 Score=351.18 Aligned_cols=212 Identities=27% Similarity=0.422 Sum_probs=174.5
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.++ .+++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 4689999988762 012469999999999999999999999999999999999987 569999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------cCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALV-------GLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~-------g~~ 986 (1436)
+.. ..+++.+||++|++.+++ .||+||+.+.. + ... .+.++++++.+++.+..+... +.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~- 141 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE- 141 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-
Confidence 643 234567999999988876 69999998642 1 111 223577888888876554432 22
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++. + ..+|++++|++
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK 218 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 246899999999999999999999999999999999999999999999985 59999999999763 3 56999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 219 -G~i~~~g~~ 227 (247)
T 2ff7_A 219 -GKIVEQGKH 227 (247)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 789998874
No 63
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.1e-37 Score=356.07 Aligned_cols=214 Identities=22% Similarity=0.309 Sum_probs=171.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++. .+++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPN----------HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTT----------CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 5899999887631 012459999999999999999999999999999999999987 5699999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHc--CCcccccccccCCC
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDT-----RKMFVEEVMELV--ELNPIREALVGLPG 987 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~v~~vl~~l--~l~~~~~~~~g~~~ 987 (1436)
.. ..+++.+||++|++.+++ .||+||+.+.... ....++ ....++++++.+ ++....+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR----TPTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 224567999999988877 5999999875311 111011 112245667777 666555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ +|+|||++||+++ ....+|++++|++
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 4899999999965 3456999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 232 -G~i~~~g~~ 240 (271)
T 2ixe_A 232 -GSVCEQGTH 240 (271)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 788888874
No 64
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.4e-37 Score=354.33 Aligned_cols=210 Identities=26% Similarity=0.310 Sum_probs=168.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC--Cccc---cceEEEecCCCCcC-
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGME--EFVP---QRTSAYISQNDLHI- 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~~---~~~~~yv~Q~~~~~- 240 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. .... ++.++|++|++...
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999998 999999998875 3221 35699999986543
Q ss_pred -CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 241 -GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 241 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
+.+||+||+.|+..... ..+.. + . .+....++.+++.+||++..+..++
T Consensus 111 ~~~ltv~enl~~~~~~~~--~~~~~--------------~--~------------~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI--GVYQD--------------I--D------------DEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------C--C------------HHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc--ccccC--------------C--c------------HHHHHHHHHHHHHcCChhHhcCChh
Confidence 35699999998632100 00000 0 0 0011245668999999887776554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEE-EEEecCchhHHHhcccEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAV-ISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~i-i~i~q~~~~~~~~~D~ii 398 (1436)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++... +.|+. +.++|+..++.++||+|+
T Consensus 161 -----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 161 -----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEE
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEE
Confidence 59999999999999999999999999999999999999999999998653 44440 567899888889999999
Q ss_pred EecCCeEEEecChhHHH
Q 046196 399 LLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~ 415 (1436)
+|++|++++.|+++++.
T Consensus 235 ~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 235 LLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEETTEEEEEEEHHHHC
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999988763
No 65
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.5e-38 Score=346.79 Aligned_cols=198 Identities=19% Similarity=0.273 Sum_probs=169.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ + .+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 578899887652 2 58999999999999999999999999999999999987 5699999999876
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
. ..++.++|++|++.+++.+||+||+.+....+.. . .+ .+.++++++.+++.+. +.. +..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 4 3466799999999999999999999987654321 1 11 3457889999999876 554 4579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
|++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++++
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 999999999999999999999999999999999999998766899999999987 4667788877664
No 66
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.5e-37 Score=345.83 Aligned_cols=200 Identities=25% Similarity=0.394 Sum_probs=161.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.+... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 45999999999999999999999999999999999999998 9999999998865432 356999999988775 6
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc-------cccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV-------CADT 316 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~dt 316 (1436)
||+||+.|+... ... + .++.+++.+||.+ ..++
T Consensus 98 tv~enl~~~~~~----~~~---------------------~---------------~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANPG----MSV---------------------E---------------KVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCTT----CCH---------------------H---------------HHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCCC----CCH---------------------H---------------HHHHHHHHhChHHHHHhCcchhhh
Confidence 999999986310 000 0 0112233344432 2344
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.++. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. . +++|+.++|+...+ ..||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~-g~tviivtH~~~~~-~~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--K-GRTVIIIAHRLSTV-KNADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--T-TSEEEEECSSGGGG-TTSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--C-CCEEEEEeCCHHHH-HhCCE
Confidence 4443 356799999999999999999999999999999999999999999999973 2 45566678887766 46999
Q ss_pred EEEecCCeEEEecChhHHH
Q 046196 397 LILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~ 415 (1436)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
No 67
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.8e-37 Score=390.63 Aligned_cols=208 Identities=21% Similarity=0.391 Sum_probs=169.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+... ++.++||+|++.+++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 45899999999999999999999999999999999999998 9999999999876543 3579999999987765
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++... .+.+++.+++...+... ....+++..||.+|+++.
T Consensus 430 tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~~~~--------~~~~lp~g~~t~~~~~g~ 476 (578)
T 4a82_A 430 TVKENILLGRPT-------------------------ATDEEVVEAAKMANAHD--------FIMNLPQGYDTEVGERGV 476 (578)
T ss_dssp BHHHHHGGGCSS-------------------------CCHHHHHHHHHHTTCHH--------HHHTSTTGGGCBCCGGGT
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHhCcHH--------HHHhCcchhhhhhccCCC
Confidence 999999987321 11112222222211111 123577888999987654
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+|||||||||+||||++.+|++++|||||||||+.++..+.+.++++.+ ++ +++.++|+...+ ..||+|++|++|
T Consensus 477 -~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~-t~i~itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 477 -KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DR-TTLIVAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp -TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TS-EEEEECSSGGGT-TTCSEEEEEETT
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CC-EEEEEecCHHHH-HcCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999988632 44 555578877665 569999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++|+.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 68
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5.2e-37 Score=347.07 Aligned_cols=205 Identities=21% Similarity=0.281 Sum_probs=163.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC--cCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK--LGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~ 240 (1436)
.++|+|||+++++|++++|+||||||||||+++|+|. ++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4599999999999999999999999999999999998 6676 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHhhhhh-cCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCC-cccccccc
Q 046196 241 GEMTVRETLAFSARC-QGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGL-EVCADTMV 318 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 318 (1436)
+.+||+||+.++... .+... .. .+....++.+++.+|| ++..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~--------~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREV--------GV------------------------AEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCC--------CH------------------------HHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccC--------CH------------------------HHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999986421 11000 00 0011235668999999 46666554
Q ss_pred cCccccc-CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHh-ccc
Q 046196 319 GDEMLRG-ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL-FDD 396 (1436)
Q Consensus 319 g~~~~~~-LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~ 396 (1436)
.. |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .+++|+.++|+..++..+ +|+
T Consensus 141 -----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~~~~~~~d~ 213 (250)
T 2d2e_A 141 -----NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG--PNFGALVITHYQRILNYIQPDK 213 (250)
T ss_dssp -----TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--TTCEEEEECSSSGGGGTSCCSE
T ss_pred -----ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhcCCE
Confidence 45 999999999999999999999999999999999999999999998743 356677788988888777 599
Q ss_pred EEEecCCeEEEecChhH
Q 046196 397 LILLSDGQIVYQGPREN 413 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~ 413 (1436)
|++|++|++++.|+++.
T Consensus 214 v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 214 VHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEETTEEEEEESHHH
T ss_pred EEEEECCEEEEEeCHHH
Confidence 99999999999999874
No 69
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.4e-37 Score=388.04 Aligned_cols=208 Identities=25% Similarity=0.392 Sum_probs=169.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 45899999999999999999999999999999999999998 9999999999877654 357999999998775 5
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++.... +.+.+.+++...+... . ...|++..||.+|+++
T Consensus 432 tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~~~~------~--i~~l~~g~~~~~~~~~- 477 (587)
T 3qf4_A 432 TIKENLKWGREDA-------------------------TDDEIVEAAKIAQIHD------F--IISLPEGYDSRVERGG- 477 (587)
T ss_dssp EHHHHHTTTCSSC-------------------------CHHHHHHHHHHTTCHH------H--HHTSSSGGGCEECSSS-
T ss_pred cHHHHHhccCCCC-------------------------CHHHHHHHHHHhCcHH------H--HHhcccchhhHhcCCC-
Confidence 9999999863210 1111122211111111 1 2357778899998755
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.+||||||||++|||||+.+|++|+||||||+||+.++..+.+.++++. ++++++.++|+...+ ..||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT---KGCTTFIITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS---TTCEEEEEESCHHHH-TTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecChHHH-HhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999863 245556577877654 689999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++|+.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
No 70
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.3e-36 Score=339.48 Aligned_cols=198 Identities=17% Similarity=0.229 Sum_probs=165.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++|++|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 45999999999999999999999999999999999999998 999983 34699999999888899999
Q ss_pred HHHHhhhhhc-CCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 247 ETLAFSARCQ-GVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 247 E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
||+.|+.... +.... +. ......++.+++.+||++..+..+ ..
T Consensus 85 enl~~~~~~~~~~~~~-----------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-----------------PK--------------SHDYQVAMQALDYLNLTHLAKREF-----TS 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-----------------CC--------------HHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHHHHhhhhhcccccC-----------------CC--------------HHHHHHHHHHHHHcCChHHhcCCh-----hh
Confidence 9999874321 10000 00 001123566899999988777554 46
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||+|++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS-QNMTVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 9999999999999999999999999999999999999999999998653 25566678999999999999999999999
Q ss_pred EEecChhHHH
Q 046196 406 VYQGPRENVL 415 (1436)
Q Consensus 406 v~~G~~~~~~ 415 (1436)
++.|+++++.
T Consensus 207 ~~~g~~~~~~ 216 (253)
T 2nq2_C 207 FKFGETRNIL 216 (253)
T ss_dssp EEEEEHHHHC
T ss_pred EecCCHHHHh
Confidence 9999988763
No 71
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-37 Score=347.91 Aligned_cols=210 Identities=26% Similarity=0.407 Sum_probs=172.2
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++ +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 56778776652 12458999999999999999999999999999999999987 56999999998864
Q ss_pred c---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------cCCCC
Q 046196 919 Q---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALV-------GLPGV 988 (1436)
Q Consensus 919 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~-------g~~~~ 988 (1436)
. ..+++.+||++|++.+++ .||+||+.+... + ... .+.++++++.+++.+..+... +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 234567999999998877 599999976421 1 111 223678889999887665432 22 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++ ....+|++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-C
Confidence 6899999999999999999999999999999999999999999999987 6999999999975 3456999999996 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
+++..|+.
T Consensus 214 ~i~~~g~~ 221 (243)
T 1mv5_A 214 QITGSGKH 221 (243)
T ss_dssp EECCCSCH
T ss_pred EEEEeCCH
Confidence 88887764
No 72
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.9e-36 Score=343.86 Aligned_cols=220 Identities=21% Similarity=0.254 Sum_probs=171.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCcceEEEECCccCCCccc----cceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL--GKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~ 240 (1436)
+++|+|||++|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 35999999999999999999999999999999999984 465 8999999998765432 23489999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-cccccccc
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTMVG 319 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 319 (1436)
+.+||+|++.+...... ...+ .+..+ ..+....++.+++.+||+ +..+..++
T Consensus 110 ~~~tv~e~~~~~~~~~~---------------~~~~-~~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVR---------------SYRG-QETLD-----------RFDFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHHH---------------HGGG-CCCCC-----------HHHHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhhh---------------hhhc-cccCC-----------HHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 99999999987532100 0000 00000 001122456789999996 45554442
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHh-cccEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL-FDDLI 398 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~ii 398 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.. .+++|+.++|+..++..+ ||+|+
T Consensus 163 ----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~--~g~tviivtHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 ----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD--GKRSFIIVTHYQRILDYIKPDYVH 236 (267)
T ss_dssp ----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC--SSCEEEEECSSGGGGGTSCCSEEE
T ss_pred ----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeeCHHHHHhhcCCEEE
Confidence 14999999999999999999999999999999999999999999998643 356677788988877776 89999
Q ss_pred EecCCeEEEecChhHHHHHHHhcCC
Q 046196 399 LLSDGQIVYQGPRENVLEFFERMGF 423 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~~~f~~~G~ 423 (1436)
+|++|++++.|+++++.. .+..||
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTC
T ss_pred EEECCEEEEEcCHHHHhh-hhhcch
Confidence 999999999999988754 344444
No 73
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-37 Score=345.34 Aligned_cols=202 Identities=23% Similarity=0.346 Sum_probs=164.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---ccceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---PQRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 45899999999999999999999999999999999999998 999999999876533 2456999999988776 6
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccc-------c
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD-------T 316 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-------t 316 (1436)
||+||+.|+... . .. ...++.+++.+|+.+..+ +
T Consensus 91 tv~enl~~~~~~-~--~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-D--YT------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-C--SC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-C--CC------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999886311 0 00 011234566677765443 3
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. . +++|+.++|+...+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~-~~tvi~vtH~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--K-GRTTLVIAHRLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--T-TSEEEEECCSHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEeCChHHH-HhCCE
Confidence 333 3456799999999999999999999999999999999999999999999874 2 45566678887665 56999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 046196 397 LILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~~ 416 (1436)
|++|++|++++.|+++++.+
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988754
No 74
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=9.9e-37 Score=348.24 Aligned_cols=209 Identities=22% Similarity=0.354 Sum_probs=165.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 45899999999999999999999999999999999999998 9999999998765432 356999999988776 6
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHh--CCcccccccccCc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKIL--GLEVCADTMVGDE 321 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 321 (1436)
||+||+.|+.... .. .+ +.. ++. ....++.+++.+ ||+...+.
T Consensus 108 tv~enl~~~~~~~--~~-~~---~~~------------------~~~------~~~~~~~~l~~l~~gl~~~~~~----- 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-ME---EIT------------------AVA------MESGAHDFISGFPQGYDTEVGE----- 152 (271)
T ss_dssp BHHHHHHTTCSSC--CC-HH---HHH------------------HHH------HHHTCHHHHHHSTTGGGSBCCG-----
T ss_pred cHHHHHhhhcccC--Ch-HH---HHH------------------HHH------HHHhHHHHHHhhhcchhhhhcC-----
Confidence 9999999864211 00 00 000 000 001123456666 66554443
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
.+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++||.++|+...+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW-ASRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTT-TTSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 34569999999999999999999999999999999999999999999986432 2556666888877664 599999999
Q ss_pred CCeEEEecChhHHHH
Q 046196 402 DGQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~ 416 (1436)
+|++++.|+++++.+
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998754
No 75
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3e-36 Score=339.48 Aligned_cols=198 Identities=24% Similarity=0.317 Sum_probs=169.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|+++++|++++|+|||||||||||++|+|.++| . |+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999987 3 999999998754332 356999999998889999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.++... .. . ...++.+++.+||++..+..+ .
T Consensus 90 v~e~l~~~~~~-~~----------~----------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 125 (249)
T 2qi9_C 90 VWHYLTLHQHD-KT----------R----------------------------TELLNDVAGALALDDKLGRST-----N 125 (249)
T ss_dssp HHHHHHTTCSS-TT----------C----------------------------HHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred HHHHHHHhhcc-CC----------c----------------------------HHHHHHHHHHcCChhHhcCCh-----h
Confidence 99999986210 00 0 112456788999988776554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCc-------eeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 325 GISGGQRKRLTTGEMLVGPAR-------ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~-------illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
.|||||||||+||+||+.+|+ +|||||||+|||+.++..+.+.|+++.+. +++|+.++|+..++..++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999 99999999999999999999999998643 556666899998888999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++|++++.|+++++.
T Consensus 204 ~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEVL 221 (249)
T ss_dssp EEEETTEEEEEEEHHHHS
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
No 76
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-36 Score=384.51 Aligned_cols=208 Identities=25% Similarity=0.369 Sum_probs=168.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+... ++.++||+|++.++ +.
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF-ST 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCC-SS
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCccc-cc
Confidence 45899999999999999999999999999999999999998 9999999999876544 35799999999876 46
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++.... +.+++.+++...+.+. . .-.+++..||.+|+++.
T Consensus 444 tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~~~~------~--~~~~~~g~~t~~~~~g~ 490 (598)
T 3qf4_B 444 TVKENLKYGNPGA-------------------------TDEEIKEAAKLTHSDH------F--IKHLPEGYETVLTDNGE 490 (598)
T ss_dssp BHHHHHHSSSTTC-------------------------CTTHHHHHTTTTTCHH------H--HHTSTTGGGCBCHHHHT
T ss_pred cHHHHHhcCCCCC-------------------------CHHHHHHHHHHhCCHH------H--HHhccccccchhcCCCC
Confidence 9999999863210 0111222222211111 1 22467788999987654
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+|||||||||+||||++.+|++|+||||||+||+.++..+.+.++++. ++.+++.++|+...+ ..||+|++|++|
T Consensus 491 -~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---~~~t~i~itH~l~~~-~~~d~i~~l~~G 565 (598)
T 3qf4_B 491 -DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM---EGKTSIIIAHRLNTI-KNADLIIVLRDG 565 (598)
T ss_dssp -TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH---TTSEEEEESCCTTHH-HHCSEEEEECSS
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHH-HcCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999874 245555577877665 559999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++|+.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999865
No 77
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.2e-37 Score=417.28 Aligned_cols=210 Identities=23% Similarity=0.371 Sum_probs=177.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|+|||.+||+||+|||||||+++|.|+++|+ +|+|.+||+++++... ++.++||||++.+| +.
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF-~g 1167 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DC 1167 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCC-SE
T ss_pred CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEee-Cc
Confidence 45999999999999999999999999999999999999998 9999999999988765 46799999999866 56
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||||||.|+..- ++.+.+++.+|++..+.+.. +-.|+++.||.||+++.
T Consensus 1168 TIreNI~~gld~-----------------------~~~sd~ei~~Al~~a~l~~~--------I~~Lp~GldT~vge~G~ 1216 (1321)
T 4f4c_A 1168 SIAENIIYGLDP-----------------------SSVTMAQVEEAARLANIHNF--------IAELPEGFETRVGDRGT 1216 (1321)
T ss_dssp EHHHHHSSSSCT-----------------------TTSCHHHHHHHHHHTTCHHH--------HHTSTTTTCSEETTTSC
T ss_pred cHHHHHhccCCC-----------------------CCCCHHHHHHHHHHhCChHH--------HHcCcCCCCCEecCCCc
Confidence 999999987421 12234455556555444332 34689999999998765
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. ++.|++++.|. ..+...||+|+||++|
T Consensus 1217 -~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~---~~~TvI~IAHR-LsTi~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1217 -QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR---EGRTCIVIAHR-LNTVMNADCIAVVSNG 1291 (1321)
T ss_dssp -SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS---SSSEEEEECSS-SSTTTTCSEEEEESSS
T ss_pred -ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc---CCCEEEEeccC-HHHHHhCCEEEEEECC
Confidence 599999999999999999999999999999999999999999998742 34555556664 4677889999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+|+++|+|+|+++
T Consensus 1292 ~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1292 TIIEKGTHTQLMS 1304 (1321)
T ss_dssp SEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999986
No 78
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.4e-36 Score=339.24 Aligned_cols=195 Identities=19% Similarity=0.169 Sum_probs=165.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEE-EecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSA-YISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|++++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 459999999999 9999999999999999999999999 98 999999998775421245799 99999876 8999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-ccccccccCcccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTMVGDEMLR 324 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 324 (1436)
+||+.++.+... . ....++.+++.+||+ +..+..+ .
T Consensus 91 ~enl~~~~~~~~--~------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--L------------------------------------DRDLFLEMLKALKLGEEILRRKL-----Y 127 (263)
T ss_dssp HHHHHHHHHHTC--C------------------------------------CHHHHHHHHHHTTCCGGGGGSBG-----G
T ss_pred HHHHHHhhhhcc--h------------------------------------HHHHHHHHHHHcCCChhHhcCCh-----h
Confidence 999998643210 0 012345678899998 7766554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcc-cEEEecCC
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFD-DLILLSDG 403 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D-~iivL~~G 403 (1436)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. . +++.++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998752 2 66668899888889999 99999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
++++.|+++++.+
T Consensus 203 ~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 203 RLQGPISVSELLE 215 (263)
T ss_dssp EEEEEEEHHHHHT
T ss_pred EEEEecCHHHHHh
Confidence 9999999988753
No 79
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.8e-36 Score=342.71 Aligned_cols=211 Identities=25% Similarity=0.384 Sum_probs=170.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++. ...+.+|+|||++|++||+++|+||||||||||+++|+|..+ + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPK----------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTT----------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 4889999887631 011359999999999999999999999999999999999875 4 79999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR-------EALVGLPG 987 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~-------~~~~g~~~ 987 (1436)
.. ..+++.+||++|++.+++ .||+||+.+.. . ... .+.+.++++.+++.+.. ++.++. .
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~ 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGK----L-DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN-K 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTC----T-TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS-S
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccC----C-CCC----HHHHHHHHHHhCCHHHHHhccccccccccC-C
Confidence 43 234567999999998876 69999998742 1 111 12346677777765432 222332 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ |+|||+++|+++. + ..+|++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 568999999999999999999999999999999999999999999999864 8999999999863 3 56999999996
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 788888874
No 80
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.5e-36 Score=340.50 Aligned_cols=206 Identities=18% Similarity=0.192 Sum_probs=170.8
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++.. ...+.+|+|+|++++ ||+++|+|||||||||||++|+|.. + .+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5677887765310 011459999999999 9999999999999999999999987 4 5899999998754
Q ss_pred cccccceEE-EeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHH
Q 046196 919 QETFARISG-YCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 919 ~~~~~~~~g-yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGqr 996 (1436)
....++.+| |++|++.+ .+||+||+.+...+. ... .+.++++++.+++. +..+.. +..||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRK-----LYKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCC-----hhhCCHHHH
Confidence 211145689 99999877 899999999876443 111 23478999999998 777765 357999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhC-eEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD-ELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D-~v~~l~~Gg~~~y~G~ 1075 (1436)
||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ |||++||+++ .+...+| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998753 9999999986 4667899 9999986 78999887
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 81
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.6e-35 Score=375.09 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=165.9
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 35899999999999999999999999999999999999998 9999999998865433 357999999998776 5
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++.. .. .+.+.+.++++..+.+ ..+ -.+++..||.+|+++
T Consensus 432 tv~eni~~~~~-~~-----------------------~~~~~~~~~~~~~~l~------~~~--~~~p~g~~t~~~~~~- 478 (582)
T 3b5x_A 432 TIANNIAYAAE-GE-----------------------YTREQIEQAARQAHAM------EFI--ENMPQGLDTVIGENG- 478 (582)
T ss_pred cHHHHHhccCC-CC-----------------------CCHHHHHHHHHHCCCH------HHH--HhCcccccchhcCCC-
Confidence 99999998631 00 0001111111111110 111 135667889998764
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.+||||||||++||||++.+|++|+|||||||||+.++..+.+.++++.+ +++++.++|+...+ +.||+|++|++|
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~-~~~d~i~~l~~G 554 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK---NKTVLVIAHRLSTI-EQADEILVVDEG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC---CCEEEEEecCHHHH-HhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998742 44555577776554 579999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 555 EIIERGRHADLLA 567 (582)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 82
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=9.7e-36 Score=378.07 Aligned_cols=211 Identities=24% Similarity=0.398 Sum_probs=166.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 45999999999999999999999999999999999999998 9999999999876543 357999999998776 5
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++..... ..+.+.+.++++..+.+ .. .-.+++..||.+|+++
T Consensus 433 tv~eni~~~~~~~~----------------------~~~~~~~~~~~~~~~l~------~~--~~~l~~g~~~~~~~~~- 481 (595)
T 2yl4_A 433 SIAENIAYGADDPS----------------------SVTAEEIQRVAEVANAV------AF--IRNFPQGFNTVVGEKG- 481 (595)
T ss_dssp BHHHHHHTTSSSTT----------------------TSCHHHHHHHHHHTTCH------HH--HHTSSSGGGCBCSSSS-
T ss_pred CHHHHHhhcCCCcc----------------------ccCHHHHHHHHHHcCCH------HH--HHhCcccccccccCCC-
Confidence 99999998742100 00111111111111110 01 1246778899998764
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.++++.+ + ++++.++|+...+ +.||+|++|++|
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~-~tvi~itH~~~~~-~~~d~i~~l~~G 557 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--G-RTVLVIAHRLSTI-KNANMVAVLDQG 557 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--T-SEEEEECCCHHHH-HHSSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHH-HcCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998753 3 4555577876655 579999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++++.+
T Consensus 558 ~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 558 KITEYGKHEELLS 570 (595)
T ss_dssp EEEEEECSCC---
T ss_pred EEEEECCHHHHHh
Confidence 9999999998854
No 83
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8.4e-36 Score=338.74 Aligned_cols=200 Identities=21% Similarity=0.323 Sum_probs=161.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++|++++|+||||||||||+++|+|.+++ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 3589999999999999999999999999999999999864 7999999998765432 356999999998775 6
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHh-------CCcccccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKIL-------GLEVCADT 316 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 316 (1436)
||+||+.|+... ... +.+ ..+++.+ ++++..||
T Consensus 108 tv~enl~~~~~~----~~~---------------------~~~---------------~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKLD----ATD---------------------EEV---------------IKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCTT----CCH---------------------HHH---------------HHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCCC----CCH---------------------HHH---------------HHHHHHhCCHHHHHhccccccc
Confidence 999999986310 000 000 1112222 45666777
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.++. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +++|+.++|+...+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~---~~tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK---NRTLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT---TSEEEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCHHHH-HhCCE
Confidence 7754 4567999999999999999999999999999999999999999999998742 45666678887765 46999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 046196 397 LILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~~ 416 (1436)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998754
No 84
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=357.33 Aligned_cols=199 Identities=23% Similarity=0.255 Sum_probs=162.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|++.+++ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 458999999999999999999999999999999999986 5 8999999999876654 367999999998776 6
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccc-------c
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD-------T 316 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-------t 316 (1436)
||+||+.+.... . ...++.+++.+||.+..+ |
T Consensus 109 tv~enl~~~~~~-----~------------------------------------~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAAH-----S------------------------------------DQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCCS-----C------------------------------------HHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhcccc-----C------------------------------------HHHHHHHHHHhCCHHHHhhccccccc
Confidence 999999753210 0 011234566677765444 3
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.+++. ..+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|++.. .+++++.++|+. +....+|+
T Consensus 148 ~i~~~-g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---~~~tvi~vtHd~-e~~~~aDr 222 (390)
T 3gd7_A 148 VLVDG-GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---ADCTVILCEARI-EAMLECDQ 222 (390)
T ss_dssp EECTT-TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT---TTSCEEEECSSS-GGGTTCSE
T ss_pred ccccc-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcCH-HHHHhCCE
Confidence 34332 23599999999999999999999999999999999999999999998742 345666678875 56677999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 046196 397 LILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~~ 416 (1436)
|++|++|+|++.|+++++.+
T Consensus 223 i~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEETTEEEEESSHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999854
No 85
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.3e-35 Score=373.77 Aligned_cols=209 Identities=23% Similarity=0.367 Sum_probs=167.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 45899999999999999999999999999999999999998 9999999999876543 357999999998776 5
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++.. .. .+.+.+.++++..+.+ ..++ .+++..||.+|+++
T Consensus 432 tv~eni~~~~~-~~-----------------------~~~~~~~~~l~~~~l~------~~~~--~~p~g~~~~~~~~~- 478 (582)
T 3b60_A 432 TVANNIAYART-EE-----------------------YSREQIEEAARMAYAM------DFIN--KMDNGLDTIIGENG- 478 (582)
T ss_dssp BHHHHHHTTTT-SC-----------------------CCHHHHHHHHHTTTCH------HHHH--HSTTGGGSBCCTTS-
T ss_pred CHHHHHhccCC-CC-----------------------CCHHHHHHHHHHcCCH------HHHH--hccccccccccCCC-
Confidence 99999998631 00 0011111221111111 1111 25667889998764
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.+|||||||||+||||++.+|++|+|||||||||+.++..+.+.++++.+ +++++.++|+...+ +.||+|++|++|
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~-~~~d~i~~l~~G 554 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLSTI-EQADEIVVVEDG 554 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT---TSEEEEECSCGGGT-TTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEeccHHHH-HhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998742 44555577776655 579999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999999864
No 86
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.4e-35 Score=327.82 Aligned_cols=196 Identities=21% Similarity=0.316 Sum_probs=152.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 45899999999999999999999999999999999999998 99999998 48999999987775 999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
||+.|+.... . . .. +...+...+ +..++. ++...+|.+++ ....|
T Consensus 87 enl~~~~~~~----~-~---~~---------------~~~~~~~~l---------~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-Y---RY---------------RSVIKACQL---------EEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-H---HH---------------HHHHHHTTC---------HHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-H---HH---------------HHHHHHhCc---------HHHHHh--CcccccccccC-CCCcC
Confidence 9999863210 0 0 00 000000000 011222 23344556653 35679
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHH-HHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSL-RQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
||||||||+|||||+.+|++++|||||+|||+.++..+.+.+ ++.. .+++|+.++|+...+ ..||+|++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~---~~~tvi~vtH~~~~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh---CCCEEEEEcCChHHH-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999864 4432 245666678887665 46999999999999
Q ss_pred EEecChhHHH
Q 046196 406 VYQGPRENVL 415 (1436)
Q Consensus 406 v~~G~~~~~~ 415 (1436)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998875
No 87
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8.4e-36 Score=327.88 Aligned_cols=188 Identities=18% Similarity=0.226 Sum_probs=155.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++|++|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999998 999999998875 23567999999998899999999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
|+.++.+..+. . .+ ...++.+++.+||++. +.. +..||
T Consensus 98 nl~~~~~~~~~-~----------------------------------~~-~~~~~~~l~~~gl~~~-~~~-----~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K----------------------------------VN-KNEIMDALESVEVLDL-KKK-----LGELS 135 (214)
T ss_dssp HHHHHHHHTTC-C----------------------------------CC-HHHHHHHHHHTTCCCT-TSB-----GGGSC
T ss_pred HHHHHHHhcCC-c----------------------------------hH-HHHHHHHHHHcCCCcC-CCC-----hhhCC
Confidence 99987543210 0 00 1234567889999865 543 45699
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +++|+.++|+..++..++|+|+++ +|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE--KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH--HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999999998642 455666788888888888887754 4544
No 88
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.8e-35 Score=327.40 Aligned_cols=200 Identities=22% Similarity=0.358 Sum_probs=159.5
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++. +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 4788998876531 23469999999999999999999999999999999999987 5699999998
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCC
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA-------LVGLPGVSG 990 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~-------~~g~~~~~~ 990 (1436)
.++|++|++.+++. ||+||+.+... .... ..+++++.+++.+..+. .++. .+..
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCc
Confidence 38999999988875 99999986421 1111 13345555555432221 2222 2468
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
||||||||++|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||+++|+++ ....+|++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 4899999999965 3356999999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8888874
No 89
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=329.65 Aligned_cols=199 Identities=23% Similarity=0.377 Sum_probs=157.5
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+.. +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 778888876531 12469999999999999999999999999999999999987 6799999998
Q ss_pred cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc------ccc-cccccCCCCCCC
Q 046196 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN------PIR-EALVGLPGVSGL 991 (1436)
Q Consensus 919 ~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~------~~~-~~~~g~~~~~~L 991 (1436)
.+||++|++. ++.+||+||+.+.... ..+ + .+++++.+++. +.. ++..+. .+..|
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~------~~~-~---~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL------EEP-Y---YRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC------CTT-H---HHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc------CHH-H---HHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 2899999976 4688999999875311 111 1 23334444332 211 112222 25689
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
|||||||++|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||++||+++. + ..+|++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 48999999999873 3 57999999996 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
+++..|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 88888874
No 90
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=352.75 Aligned_cols=211 Identities=21% Similarity=0.302 Sum_probs=175.0
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.+. .+++.+|+|||++|++||+++|+|||||||||||++|+|..+ .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 4689999988763 123569999999999999999999999999999999999874 58999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGL------PG 987 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~------~~ 987 (1436)
+.. ..+++.+||++|+..+++ +||+||+.+.. ... ++.++++++.++|.+..+..... ..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 753 234577999999999887 69999995321 111 23468899999998777665321 11
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
..+|||||||||+|||||+.+|++|||||||||||+.++..+++.|+++. .++|||+++|+.+ ....+|+|++|++
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~- 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE- 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-
Confidence 23499999999999999999999999999999999999999999999864 4899999999964 4567999999996
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++..|++
T Consensus 229 G~i~~~g~~ 237 (390)
T 3gd7_A 229 NKVRQYDSI 237 (390)
T ss_dssp TEEEEESSH
T ss_pred CEEEEECCH
Confidence 799999975
No 91
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=331.39 Aligned_cols=199 Identities=23% Similarity=0.340 Sum_probs=154.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 45899999999999999999999999999999999999987 99999999 4899999986 5689999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCC-cccccccccCccccc
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGL-EVCADTMVGDEMLRG 325 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~vg~~~~~~ 325 (1436)
||+.|+.... . +. .+...++. .+++.+++ +...+|.++ +.+..
T Consensus 84 enl~~~~~~~---~--~~------------------~~~~~~~~------------~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE---E--PY------------------YRSVIQAC------------ALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC---T--TH------------------HHHHHHHT------------TCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC---H--HH------------------HHHHHHHH------------hhHHHHHhcccccccccc-CCCCC
Confidence 9999864211 0 00 00000100 01223333 223344454 44567
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++......+++|+.++|+...+ ..||+|++|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i 206 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKI 206 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999885211111245666678887665 57999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
++.|+++++.+
T Consensus 207 ~~~g~~~~~~~ 217 (237)
T 2cbz_A 207 SEMGSYQELLA 217 (237)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHhh
Confidence 99999998754
No 92
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.5e-35 Score=369.02 Aligned_cols=213 Identities=20% Similarity=0.316 Sum_probs=173.6
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
+..++++|+++.++. +.+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~ 405 (587)
T 3qf4_A 339 EGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDEL 405 (587)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSS
T ss_pred CCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCE
Confidence 346999999987741 23469999999999999999999999999999999999987 57999999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 046196 916 PKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-------IREALVGL 985 (1436)
Q Consensus 916 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~~g~ 985 (1436)
++.. ..+++.++||+|++.+++. ||+||+.++. + ..+.+ .+.+.++..++.+ -.++.+|.
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~ 475 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR----E-DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVER 475 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC----S-SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECS
T ss_pred EcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC----C-CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcC
Confidence 8753 3456779999999988864 9999997642 1 12222 2344455544432 23444444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
. +.+||||||||++|||||+++|+||+||||||+||+.+...+++.|+++. +|+|+|+++|+++ ....+|+|++|+
T Consensus 476 ~-~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~ 551 (587)
T 3qf4_A 476 G-GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLH 551 (587)
T ss_dssp S-SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEE
T ss_pred C-CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEE
Confidence 3 56899999999999999999999999999999999999999999999974 5899999999975 456899999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 552 ~-G~i~~~g~~ 561 (587)
T 3qf4_A 552 E-GKVAGFGTH 561 (587)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999985
No 93
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.9e-34 Score=364.59 Aligned_cols=216 Identities=27% Similarity=0.384 Sum_probs=177.4
Q ss_pred ce-eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 837 HS-ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 837 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
.. ++++|+++.++.. .++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~~----------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~ 406 (595)
T 2yl4_A 339 QGALEFKNVHFAYPAR----------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGH 406 (595)
T ss_dssp CCCEEEEEEEEECSSC----------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCE
Confidence 35 9999999887310 12459999999999999999999999999999999999987 57999999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 046196 916 PKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGL 985 (1436)
Q Consensus 916 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~ 985 (1436)
++.. ..+++.+||++|++.+++ .||+||+.++... ....+ ++.++++++.+++.+. .|+.+|.
T Consensus 407 ~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~ 479 (595)
T 2yl4_A 407 DIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADD--PSSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE 479 (595)
T ss_dssp ETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSS--TTTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS
T ss_pred EhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCC--ccccC----HHHHHHHHHHcCCHHHHHhCcccccccccC
Confidence 8753 335567999999998886 5999999875311 00112 2346788888887644 3444544
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
. +.+||||||||++|||||+++|++|+||||||+||+.++..+++.|+++.+ |+|||+++|+++ ..+.+|++++|+
T Consensus 480 ~-~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~ 555 (595)
T 2yl4_A 480 K-GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLD 555 (595)
T ss_dssp S-SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEE
Confidence 3 468999999999999999999999999999999999999999999999876 899999999975 346799999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 556 ~-G~i~~~g~~ 565 (595)
T 2yl4_A 556 Q-GKITEYGKH 565 (595)
T ss_dssp T-TEEEEEECS
T ss_pred C-CEEEEECCH
Confidence 6 789999986
No 94
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.3e-34 Score=366.36 Aligned_cols=213 Identities=25% Similarity=0.382 Sum_probs=174.3
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
...++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 346999999987641 23469999999999999999999999999999999999987 57999999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 046196 916 PKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGL 985 (1436)
Q Consensus 916 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~ 985 (1436)
++.. ..+++.+|||+|++.+++. ||+||+.++. + ..+. +.+.++++..++.+. .++.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 8643 3456779999999988875 9999998752 2 1122 224566666665433 2344443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
. +.+||||||||++|||||+++|++|+|||||||||+.+...+.+.++++. +|+|+|+++|+++. ...+|++++|+
T Consensus 474 ~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~ 549 (578)
T 4a82_A 474 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 549 (578)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE
Confidence 2 45899999999999999999999999999999999999999999999885 47999999999873 46699999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 550 ~-G~i~~~g~~ 559 (578)
T 4a82_A 550 N-GHIVETGTH 559 (578)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999985
No 95
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.9e-34 Score=365.30 Aligned_cols=213 Identities=21% Similarity=0.305 Sum_probs=176.3
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEE
Confidence 45999999887631 11459999999999999999999999999999999999987 579999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR-------EALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~-------~~~~g~~ 986 (1436)
+.. ..+++.+||++|++.+++ .||+||+.++.. + ..+ ++.++++++.+++.+.. ++.+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 743 335567999999998887 499999987531 1 122 23367788888876543 3344433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+.+||||||||++|||||+++|++|+|||||||||+.++..+++.|+++.+ |+|+|+++|+++ ..+.+|++++|++
T Consensus 478 -~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~ 553 (582)
T 3b60_A 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED 553 (582)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH--HHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999865 899999999986 3457999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 554 -G~i~~~g~~ 562 (582)
T 3b60_A 554 -GIIVERGTH 562 (582)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEecCH
Confidence 789999975
No 96
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.9e-34 Score=363.55 Aligned_cols=213 Identities=24% Similarity=0.323 Sum_probs=176.4
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEE
Confidence 46999999988731 12459999999999999999999999999999999999987 569999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA-------LVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~-------~~g~~ 986 (1436)
+.. ..+++.+||++|++.+++ .||+||+.++.. + ..+ .+.++++++.+++.+..+. .+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 643 345678999999998887 499999987531 1 122 2336788888888655433 33432
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+.+||||||||++|||||+++|++|+|||||||||+.++..+++.|+++.+ |+|+|+++|+++ ..+.+|++++|++
T Consensus 478 -~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~ 553 (582)
T 3b5x_A 478 -GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999864 899999999975 4467999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 554 -G~i~~~g~~ 562 (582)
T 3b5x_A 554 -GEIIERGRH 562 (582)
T ss_pred -CEEEEECCH
Confidence 789998875
No 97
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.8e-34 Score=360.78 Aligned_cols=211 Identities=25% Similarity=0.405 Sum_probs=170.9
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.++ +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEE
Confidence 4699999998763 12459999999999999999999999999999999999987 579999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE-------ALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~-------~~~g~~ 986 (1436)
+.. ..+++.+||++|++.+++ .||+||+.++. + ..+.+ .++++++..++.+..+ +.+|.
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~- 487 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN----P-GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD- 487 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS----T-TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH-
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC----C-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC-
Confidence 643 345678999999998875 59999998642 1 11211 1345555555543322 22221
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
.+.+||||||||++|||||+++|++|+||||||+||+.+...+++.|+++. +|+|+|+++|+++. ...+|+|++|++
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~ 564 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--IKNADLIIVLRD 564 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH--HHHCSEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC
Confidence 135799999999999999999999999999999999999999999999985 58999999999873 456999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 565 -G~i~~~g~~ 573 (598)
T 3qf4_B 565 -GEIVEMGKH 573 (598)
T ss_dssp -SSEEECSCH
T ss_pred -CEEEEECCH
Confidence 789999975
No 98
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.2e-33 Score=321.33 Aligned_cols=195 Identities=23% Similarity=0.371 Sum_probs=148.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.. +.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 47788887631 348999999999999999999999999999999999987 6799999998
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCC
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA-------LVGLPGVSG 990 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~-------~~g~~~~~~ 990 (1436)
.++|++|++.+++. ||+||+. .. . ... . .++++++.+++.+..+. ..+. .+..
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~-~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDE-Y---RYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH-H---HHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch-H---HHHHHHHHhChHHHHHhccccccchhcC-ccCc
Confidence 37999999888775 9999997 21 1 111 1 13445556666433222 1221 2468
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
||||||||++|||||+.+|++|+|||||+|||+.++..+++.+ +++. +|+|||+++|+++ ....+|++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999974 5554 4899999999975 3456999999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 236 i~~~g~~ 242 (290)
T 2bbs_A 236 SYFYGTF 242 (290)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 8888875
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=5.8e-33 Score=319.18 Aligned_cols=195 Identities=21% Similarity=0.310 Sum_probs=149.1
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 4899999999999999999999999999999999999987 99999998 4899999988776 59999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
|+. +... .. .. . +...+...+ +..++. ++...++.++. .+..||
T Consensus 118 nl~-~~~~----~~-~~---~---------------~~~~~~~~l---------~~~l~~--~~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YR---Y---------------RSVIKACQL---------EEDISK--FAEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HH---H---------------HHHHHHTTC---------HHHHHT--STTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HH---H---------------HHHHHHhCh---------HHHHHh--ccccccchhcC-ccCcCC
Confidence 998 4211 00 00 0 000000000 111222 23344555653 355799
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHH-HHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSL-RQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv 406 (1436)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.+ +++. .+++|+.++|+...+ ..||+|++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~---~~~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh---CCCEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4432 245666678887665 569999999999999
Q ss_pred EecChhHHHH
Q 046196 407 YQGPRENVLE 416 (1436)
Q Consensus 407 ~~G~~~~~~~ 416 (1436)
+.|+++++.+
T Consensus 238 ~~g~~~~l~~ 247 (290)
T 2bbs_A 238 FYGTFSELQN 247 (290)
T ss_dssp EEECHHHHHH
T ss_pred EeCCHHHHhh
Confidence 9999998753
No 100
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.8e-33 Score=380.30 Aligned_cols=210 Identities=21% Similarity=0.355 Sum_probs=170.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++++... ++.++||+|++.++ +.
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DC 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccc-cc
Confidence 35899999999999999999999999999999999999998 9999999999876553 35799999999755 67
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+|||.++...... +.+++.+++...+.+ .. .-.+++..||.||+++.
T Consensus 1122 ti~eNi~~~~~~~~~-----------------------~~~~i~~~~~~~~~~------~~--i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVV-----------------------SYEEIVRAAKEANIH------QF--IDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp BHHHHHTCCCSSCCC-----------------------CHHHHHHHHHHHTCH------HH--HSSTTTGGGCBCSTTSC
T ss_pred cHHHHHhccCCCCCC-----------------------CHHHHHHHHHHhCcH------HH--HHhCccccccccCCCCC
Confidence 999999987432110 111122221111111 11 23478889999997654
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|++.. ++.+++.++|+...+ ..||+|++|++|
T Consensus 1171 -~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~---~~~tvi~isH~l~~i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1171 -QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR---EGRTCIVIAHRLSTI-QNADLIVVIQNG 1245 (1284)
T ss_dssp -SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS---SSSCEEEECSCTTGG-GSCSEEEEEETB
T ss_pred -ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecCHHHH-HcCCEEEEEECC
Confidence 699999999999999999999999999999999999999999998742 345566688888776 569999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++++++
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=1.2e-29 Score=319.36 Aligned_cols=191 Identities=25% Similarity=0.262 Sum_probs=160.8
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 248 (1436)
.|+++|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++ ..++|++|+....+.+||+|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~----------~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD----------LTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC----------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe----------eEEEEEecCccCCCCCcHHHH
Confidence 578888889999999999999999999999999999998 8999762 369999999877788999998
Q ss_pred HHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 046196 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328 (1436)
Q Consensus 249 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 328 (1436)
+....... + .....++.+|+.+||.+..+..++ .|||
T Consensus 438 ~~~~~~~~-----~---------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----L---------------------------------NSNFYKTELLKPLGIIDLYDRNVE-----DLSG 474 (607)
T ss_dssp HHHHHHHH-----H---------------------------------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCH
T ss_pred HHhhhccC-----C---------------------------------CHHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 86531000 0 001234567899999877776554 5999
Q ss_pred hhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC--CeEE
Q 046196 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD--GQIV 406 (1436)
Q Consensus 329 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~--G~iv 406 (1436)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999986533 45666689999999999999999986 8899
Q ss_pred EecChhHHHH
Q 046196 407 YQGPRENVLE 416 (1436)
Q Consensus 407 ~~G~~~~~~~ 416 (1436)
..|+++++.+
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999998865
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1.3e-29 Score=316.09 Aligned_cols=191 Identities=25% Similarity=0.262 Sum_probs=159.1
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 248 (1436)
.|+++|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++ ..++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~----------~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWD----------LTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCCC----------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEC----------ceEEEEecCCcCCCCCcHHHH
Confidence 577888889999999999999999999999999999998 8999752 359999999877788999988
Q ss_pred HHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 046196 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328 (1436)
Q Consensus 249 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 328 (1436)
+...... . .. ....++.+++.+||.+..+..+ ..|||
T Consensus 368 ~~~~~~~-~----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 404 (538)
T 1yqt_A 368 LSKIDAS-K----------LN---------------------------SNFYKTELLKPLGIIDLYDREV-----NELSG 404 (538)
T ss_dssp HHHHHHH-H----------HT---------------------------CHHHHHHTTTTTTCGGGTTSBG-----GGCCH
T ss_pred HHhhhcc-C----------CC---------------------------HHHHHHHHHHHcCChhhhcCCh-----hhCCH
Confidence 7643100 0 00 0113455788899987766555 45999
Q ss_pred hhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC--CeEE
Q 046196 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD--GQIV 406 (1436)
Q Consensus 329 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~--G~iv 406 (1436)
||||||+||++|+.+|++|||||||+|||..+...+.+.|+++++.. +.+|+.++|+..++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999986433 45566689999999999999999986 8899
Q ss_pred EecChhHHHH
Q 046196 407 YQGPRENVLE 416 (1436)
Q Consensus 407 ~~G~~~~~~~ 416 (1436)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=3e-29 Score=311.85 Aligned_cols=192 Identities=20% Similarity=0.225 Sum_probs=158.6
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 248 (1436)
.|+++|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|. .++|++|+....+.+||+||
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe---------eeEeechhcccccCCCHHHH
Confidence 467778889999999999999999999999999999998 999997763 58999998776778999999
Q ss_pred HHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 046196 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328 (1436)
Q Consensus 249 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 328 (1436)
+.+..... . .. ....++.+++.+||.+..+..+ ..|||
T Consensus 351 l~~~~~~~-~-------------------~~-----------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 388 (538)
T 3ozx_A 351 LENASKDA-L-------------------ST-----------------SSWFFEEVTKRLNLHRLLESNV-----NDLSG 388 (538)
T ss_dssp HHHHCSST-T-------------------CT-----------------TSHHHHHTTTTTTGGGCTTSBG-----GGCCH
T ss_pred HHHhhhhc-c-------------------ch-----------------hHHHHHHHHHHcCCHHHhcCCh-----hhCCH
Confidence 98642100 0 00 0112355678889987777555 46999
Q ss_pred hhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC--CeEE
Q 046196 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD--GQIV 406 (1436)
Q Consensus 329 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~--G~iv 406 (1436)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++. .+++|+.++|+..++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999998754 356666789999999999999999986 6677
Q ss_pred EecChhHHH
Q 046196 407 YQGPRENVL 415 (1436)
Q Consensus 407 ~~G~~~~~~ 415 (1436)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777776554
No 104
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.1e-29 Score=312.16 Aligned_cols=193 Identities=23% Similarity=0.226 Sum_probs=159.5
Q ss_pred ceeeecceEEEeCC-----eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCC
Q 046196 167 LTILHDVSGIIKPQ-----RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIG 241 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~ 241 (1436)
..+++|+|+++++| |+++|+||||||||||+++|+|+++|+ +|+. + ....++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 789999999999999999999999998 7852 1 1346899999977677
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
..||+|++....+ +. . .....++.+++.+||.+..+..+
T Consensus 427 ~~tv~e~~~~~~~--~~---~---------------------------------~~~~~~~~~l~~l~l~~~~~~~~--- 465 (608)
T 3j16_B 427 PGTVRQLFFKKIR--GQ---F---------------------------------LNPQFQTDVVKPLRIDDIIDQEV--- 465 (608)
T ss_dssp CSBHHHHHHHHCS--ST---T---------------------------------TSHHHHHHTHHHHTSTTTSSSBS---
T ss_pred CccHHHHHHHHhh--cc---c---------------------------------ccHHHHHHHHHHcCChhhhcCCh---
Confidence 7899998754211 00 0 00012345788999988777655
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.... +.+|+.++|+..++..++|+|++|+
T Consensus 466 --~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~-g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 466 --QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp --SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEECE
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 4599999999999999999999999999999999999999999999986543 4566668999999999999999998
Q ss_pred C--CeEEEecChhHHHH
Q 046196 402 D--GQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~--G~iv~~G~~~~~~~ 416 (1436)
+ |+++..|++++++.
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999999875
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.96 E-value=2.4e-31 Score=333.10 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=115.0
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHH
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAW 950 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~ 950 (1436)
++.+++|++++|+|+||||||||++.++|...+ .|+ +.+.|++|+.. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 458999999999999999999999999986542 232 12345555431 12222221
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH-----H
Q 046196 951 LRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1025 (1436)
Q Consensus 951 l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~-----~ 1025 (1436)
+. ..+. ++ +...|+..+.+.. +..||+||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~--g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 1121 22 2235555554443 3579999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCC---------HHHHHhhCeEEEEecC
Q 046196 1026 AAIVMRTVRNTVDTGRTVVCTIHQPS---------IDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1026 ~~~i~~~l~~~~~~g~tvi~~~H~~~---------~~~~~~~D~v~~l~~G 1067 (1436)
+..+.++++.+++.|.|||+++|+.. ..+...+|+|++|.+|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 99999999999888999999999971 2355689999999874
No 106
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=5.5e-28 Score=312.88 Aligned_cols=193 Identities=19% Similarity=0.260 Sum_probs=155.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.+...|+++.+. ++.+|+|+||++++|++++|+|||||||||||++|+| |+| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 456667776652 3469999999999999999999999999999999994 222 34432
Q ss_pred CcccccceEEEeecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 046196 918 NQETFARISGYCEQTD-IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGq 995 (1436)
.. ...++|++|+. .+++.+||.|++.+ ... .. .+.++++++.+|+. +..+..+ ..|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~----~~~-~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE----SGV-GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT----TCS-SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH----hhc-CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 21 12368999874 67789999999975 111 11 34578999999995 5666654 4799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE-EEc
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI-YVG 1074 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~-y~G 1074 (1436)
|||++||++|+.+|+||+|||||+|||+.++..+.+.|++ .|+|||+++|++. .+...+|++++|++ |+++ |.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCC
Confidence 9999999999999999999999999999999999999998 5899999999975 56778999999996 5765 788
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
+.
T Consensus 629 ~~ 630 (986)
T 2iw3_A 629 NF 630 (986)
T ss_dssp CH
T ss_pred CH
Confidence 75
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=2.7e-28 Score=314.20 Aligned_cols=204 Identities=22% Similarity=0.303 Sum_probs=133.2
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHH---------------------HhHcCCCCCC--c---eeEEEEECCccC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTGG--Y---VSGSITISGYPK 917 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl---------------------~~L~g~~~~~--~---~~G~i~i~g~~~ 917 (1436)
+.+|+||||+|++||++||+||||||||||+ +++.|...++ . ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999997 6666654432 1 146777777654
Q ss_pred CcccccceEEEeecCCC-------------------CCCCCcHHHHHHHHHHhcCCCCCCHHHHH------HHHHHHHHH
Q 046196 918 NQETFARISGYCEQTDI-------------------HSPHVTVYESLVYSAWLRLPPEVDSDTRK------MFVEEVMEL 972 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~-------------------~~~~lTv~e~l~~~~~l~~~~~~~~~~~~------~~v~~vl~~ 972 (1436)
... .++.+|+++|... .++.+||+|++.+...+..... ...... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 1233455554332 2357899999987533221110 000000 011235788
Q ss_pred cCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--cceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 046196 973 VELNPI-REALVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049 (1436)
Q Consensus 973 l~l~~~-~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~--illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1049 (1436)
+||.+. .+.. +..|||||||||+|||||+.+|+ +|+|||||+|||+.++..+++.|++++++|.|||+++|+
T Consensus 189 ~gL~~~~~~~~-----~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCB-----GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCC-----cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 888764 3554 35799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CCHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 046196 1050 PSIDIFDAFDELLLMK-----RGGEEIYVGPL 1076 (1436)
Q Consensus 1050 ~~~~~~~~~D~v~~l~-----~Gg~~~y~G~~ 1076 (1436)
++ ....+|++++|. ++|++++.|+.
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTP 293 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCH
Confidence 65 456799999993 35899999985
No 108
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=1.3e-24 Score=278.90 Aligned_cols=107 Identities=25% Similarity=0.305 Sum_probs=91.5
Q ss_pred HHHHHHHhCCcc-cccccccCcccccCChhhhhHHHHHHHHhcCC---ceeEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 046196 301 TDYVLKILGLEV-CADTMVGDEMLRGISGGQRKRLTTGEMLVGPA---RALFMDEISTGLDSSTTYQIVNSLRQSIHILN 376 (1436)
Q Consensus 301 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~---~illLDEptsgLD~~t~~~i~~~l~~~~~~~~ 376 (1436)
...+|+.+||.. ..+.. +..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .
T Consensus 825 ~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~--~ 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD--N 897 (972)
T ss_dssp HHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--C
Confidence 356799999976 44544 4569999999999999999764 99999999999999999999999999865 3
Q ss_pred CeEEEEEecCchhHHHhcccEEEe------cCCeEEEecChhHHH
Q 046196 377 GTAVISLLQPAPETYELFDDLILL------SDGQIVYQGPRENVL 415 (1436)
Q Consensus 377 ~t~ii~i~q~~~~~~~~~D~iivL------~~G~iv~~G~~~~~~ 415 (1436)
+.+|++++|+..++ ..+|+|++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 56666688988765 789999999 799999999999875
No 109
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=4.8e-24 Score=276.51 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=91.5
Q ss_pred HHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCC---ceeEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 046196 300 VTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA---RALFMDEISTGLDSSTTYQIVNSLRQSIHILN 376 (1436)
Q Consensus 300 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~---~illLDEptsgLD~~t~~~i~~~l~~~~~~~~ 376 (1436)
.+..+|+.+||.... +| +...+|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .
T Consensus 784 ~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~- 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-R- 857 (916)
T ss_dssp HHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c-
Confidence 455689999997421 22 344579999999999999999865 79999999999999999999999999865 3
Q ss_pred CeEEEEEecCchhHHHhcccEEEe------cCCeEEEecChhHHHH
Q 046196 377 GTAVISLLQPAPETYELFDDLILL------SDGQIVYQGPRENVLE 416 (1436)
Q Consensus 377 ~t~ii~i~q~~~~~~~~~D~iivL------~~G~iv~~G~~~~~~~ 416 (1436)
+.+||+++|+...+ ..||+|++| ++|+|+++|+++++.+
T Consensus 858 G~TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 858 GNTVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCEEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 45566688888655 669999999 8999999999999863
No 110
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=4.8e-24 Score=274.68 Aligned_cols=108 Identities=24% Similarity=0.283 Sum_probs=91.9
Q ss_pred HHHHHHHhCCcc-cccccccCcccccCChhhhhHHHHHHHHhcC---CceeEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 046196 301 TDYVLKILGLEV-CADTMVGDEMLRGISGGQRKRLTTGEMLVGP---ARALFMDEISTGLDSSTTYQIVNSLRQSIHILN 376 (1436)
Q Consensus 301 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvsia~al~~~---~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~ 376 (1436)
...+|+.+||.. ..+.. +..|||||||||+||++|+.+ |++|||||||+|||+.+...+.+.|++++. .
T Consensus 843 ~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~--~ 915 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD--K 915 (993)
T ss_dssp HHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--C
Confidence 356799999976 44433 456999999999999999986 499999999999999999999999999865 3
Q ss_pred CeEEEEEecCchhHHHhcccEEEe------cCCeEEEecChhHHHH
Q 046196 377 GTAVISLLQPAPETYELFDDLILL------SDGQIVYQGPRENVLE 416 (1436)
Q Consensus 377 ~t~ii~i~q~~~~~~~~~D~iivL------~~G~iv~~G~~~~~~~ 416 (1436)
+.+|++++|+...+ ..||+|++| ++|++++.|+++++.+
T Consensus 916 G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 916 GNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 56666688988775 789999999 7999999999998854
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=4.2e-24 Score=274.88 Aligned_cols=108 Identities=21% Similarity=0.288 Sum_probs=93.4
Q ss_pred HHHHHHHHhCCccc-ccccccCcccccCChhhhhHHHHHHHHhcC---CceeEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 046196 300 VTDYVLKILGLEVC-ADTMVGDEMLRGISGGQRKRLTTGEMLVGP---ARALFMDEISTGLDSSTTYQIVNSLRQSIHIL 375 (1436)
Q Consensus 300 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~---~~illLDEptsgLD~~t~~~i~~~l~~~~~~~ 375 (1436)
.++.+|+.+||... .+. .+..|||||||||+||++|+.+ |++|||||||+|||..+...+.+.|++++.
T Consensus 709 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-- 781 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-- 781 (842)
T ss_dssp HHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--
Confidence 45678999999763 343 3456999999999999999996 799999999999999999999999999865
Q ss_pred CCeEEEEEecCchhHHHhcccEEEe------cCCeEEEecChhHHH
Q 046196 376 NGTAVISLLQPAPETYELFDDLILL------SDGQIVYQGPRENVL 415 (1436)
Q Consensus 376 ~~t~ii~i~q~~~~~~~~~D~iivL------~~G~iv~~G~~~~~~ 415 (1436)
.+.+|++++|+..++ ..||+|++| ++|+|++.|+++++.
T Consensus 782 ~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 782 AGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 356666789998887 889999999 799999999999874
No 112
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.2e-26 Score=275.53 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=142.1
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce-E-EEECCccCCCccccceEEEecCCCC---cCCCCCH
Q 046196 171 HDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSG-R-VTYNGHGMEEFVPQRTSAYISQNDL---HIGEMTV 245 (1436)
Q Consensus 171 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~-V~~~G~~~~~~~~~~~~~yv~Q~~~---~~~~lTV 245 (1436)
.++|+.+++|++++|+||||||||||+++|+|++.|+ +| + |.++|. +++.++|++|+.. +...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 4899999999999999999999999999999999887 89 9 999982 3567899999873 4556899
Q ss_pred HHHHHhhhhhc-CCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 246 RETLAFSARCQ-GVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 246 ~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
+||+ |+.... +... . ..+..+++.+||++..+ ..
T Consensus 200 ~eni-~~~~~~~~~~~-~------------------------------------~~~~~ll~~~gl~~~~~-------~~ 234 (460)
T 2npi_A 200 QLPT-WGQSLTSGATL-L------------------------------------HNKQPMVKNFGLERINE-------NK 234 (460)
T ss_dssp TCTT-CSCBCBSSCCS-S------------------------------------CCBCCEECCCCSSSGGG-------CH
T ss_pred hhhh-cccccccCcch-H------------------------------------HHHHHHHHHhCCCcccc-------hh
Confidence 9999 764321 1000 0 00112355678876554 34
Q ss_pred cCChhhhhHHHHHHH--HhcCCce----eEEeC-CCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCch------hHH
Q 046196 325 GISGGQRKRLTTGEM--LVGPARA----LFMDE-ISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP------ETY 391 (1436)
Q Consensus 325 ~LSGGqkqRvsia~a--l~~~~~i----llLDE-ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~------~~~ 391 (1436)
.|||||||||++|++ |+.+|++ ||||| ||++||.. ...+.+.+++ .+.++|+ ++|+.. ++.
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tvii-Vth~~~~~l~~~~~~ 308 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIML-VLCSETDPLWEKVKK 308 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEE-EECCSSCTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEE-EEccCchhhhHHHHH
Confidence 699999999999999 9999999 99999 99999999 4445554443 3455555 445444 666
Q ss_pred Hhccc-----EEEec-CCeEEEecChhHHH
Q 046196 392 ELFDD-----LILLS-DGQIVYQGPRENVL 415 (1436)
Q Consensus 392 ~~~D~-----iivL~-~G~iv~~G~~~~~~ 415 (1436)
.++|+ |++|+ +|+++ .|+++++.
T Consensus 309 ~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 309 TFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred HhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 89999 99999 99999 99987764
No 113
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.1e-26 Score=277.32 Aligned_cols=197 Identities=15% Similarity=0.074 Sum_probs=149.3
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeE-E-EEECCccCCcccccceEEEeecCCC---CCCCCcH
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSG-S-ITISGYPKNQETFARISGYCEQTDI---HSPHVTV 941 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~q~~~---~~~~lTv 941 (1436)
+.++|+.+++|++++|+||||||||||+++|+|... +.+| + |.+||. .++.++|++|+.. +.+.+||
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 457999999999999999999999999999999876 5789 8 999983 2456899999874 4556899
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH--HhhCCCc----ceee
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMD 1015 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~a--L~~~p~i----lllD 1015 (1436)
+|++ |........ .. .+.+.++++.+|+.+..+ ...|||||||||+|||+ |+.+|++ |+||
T Consensus 200 ~eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD 266 (460)
T 2npi_A 200 QLPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD 266 (460)
T ss_dssp TCTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEe
Confidence 9988 643321111 00 112355677778876654 24799999999999999 9999999 9999
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC--H---HHHHhhCe-----EEEEecCcEEEEEcCCCcc----h
Q 046196 1016 E-PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFDAFDE-----LLLMKRGGEEIYVGPLGRH----C 1080 (1436)
Q Consensus 1016 E-PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~D~-----v~~l~~Gg~~~y~G~~~~~----~ 1080 (1436)
| ||++||+. ...+.+.++++ |.|+|+++|+.+ . .+...+|+ |++|++.|+++ .|+.... .
T Consensus 267 EpPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~ 341 (460)
T 2npi_A 267 TPSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQR 341 (460)
T ss_dssp CCCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHH
T ss_pred CCcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhH
Confidence 9 99999999 55666655543 789999999976 3 34578999 99998335666 7775321 1
Q ss_pred hHHHHHhhh
Q 046196 1081 SQLIKYFEG 1089 (1436)
Q Consensus 1081 ~~~~~yf~~ 1089 (1436)
..+.+||..
T Consensus 342 ~~i~~~f~g 350 (460)
T 2npi_A 342 TSIREYFYG 350 (460)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhCC
Confidence 245577754
No 114
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.89 E-value=2.4e-23 Score=253.70 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=139.8
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC------------------------------------CceeE
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYVSG 908 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~------------------------------------~~~~G 908 (1436)
.+|+++|+.+.+| +++|+|+|||||||||++|.+...+ ...+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 9999999999999999999654321 01268
Q ss_pred EEEECCccCCccc---c-cceEEEeecCCCCCCCCcHHHHHHHHHHhc-----------------------CCCCCC---
Q 046196 909 SITISGYPKNQET---F-ARISGYCEQTDIHSPHVTVYESLVYSAWLR-----------------------LPPEVD--- 958 (1436)
Q Consensus 909 ~i~i~g~~~~~~~---~-~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~-----------------------~~~~~~--- 958 (1436)
.+++||.+++... . ...+++++|++.+... +..+...|.-... ......
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999999876422 2 2347999998766532 4444433321110 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---cccC---
Q 046196 959 -------------------------------SDTRKMFVEEVMELVELNPIR----------------EA---LVGL--- 985 (1436)
Q Consensus 959 -------------------------------~~~~~~~v~~vl~~l~l~~~~----------------~~---~~g~--- 985 (1436)
.......+++.++.+++.... +. ....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112334455555554310 00 0110
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--CcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhC
Q 046196 986 ---PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1059 (1436)
Q Consensus 986 ---~~~~~-LSgGqrqRl~iA~aL~~~p--~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1059 (1436)
..++. ||||||||++||++|+.+| ++|+|||||+|||+.+...+.+.|++++ +|+|||+|||++ ++...+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 00112 6999999999999999999 9999999999999999999999999997 589999999996 4568899
Q ss_pred eEEEE----ecCcEEEEE
Q 046196 1060 ELLLM----KRGGEEIYV 1073 (1436)
Q Consensus 1060 ~v~~l----~~Gg~~~y~ 1073 (1436)
++++| .+ |+++-.
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 65 565443
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=1e-22 Score=248.25 Aligned_cols=236 Identities=16% Similarity=0.128 Sum_probs=147.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-----------------------------------CCcc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD-----------------------------------LKFS 211 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~~ 211 (1436)
..+|+++|+.+++| +++|+|||||||||||++|.+..... ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 34799999999999 99999999999999999997766421 0116
Q ss_pred eEEEECCccCCCcccc----ceEEEecCCCCcCCCCCHHHHHHhhhhhcCC-----CCchhhhhhhhHHHHHccCCCCC-
Q 046196 212 GRVTYNGHGMEEFVPQ----RTSAYISQNDLHIGEMTVRETLAFSARCQGV-----GPRYEVLQELSRREKAANIKPDP- 281 (1436)
Q Consensus 212 G~V~~~G~~~~~~~~~----~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~- 281 (1436)
|++.+||.+++..... ..+++++|++.++. .+..+...|--..... ...+....+..+..... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Confidence 8899999887642221 23899999876543 3565555443211100 00000000000000000 00000
Q ss_pred ----------cHHHHH-----------HHhhhhhhhhhHHHHHHHHHhCCcccc----------------cc---cccC-
Q 046196 282 ----------DIDLIM-----------KAASLEGQEKNVVTDYVLKILGLEVCA----------------DT---MVGD- 320 (1436)
Q Consensus 282 ----------~~~~~~-----------~~~~~~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~- 320 (1436)
..+... +............++..++.++++... +. .++.
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 000000 000000111223445567777776411 00 1111
Q ss_pred -----ccccc-CChhhhhHHHHHHHHhcCC--ceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHH
Q 046196 321 -----EMLRG-ISGGQRKRLTTGEMLVGPA--RALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYE 392 (1436)
Q Consensus 321 -----~~~~~-LSGGqkqRvsia~al~~~~--~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 392 (1436)
..++. |||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|+++.+ +.+|+.++|.. ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~---~~~vi~itH~~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD---TRQVLVVTHLA-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT---TSEEEEECSCH-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC---CCEEEEEeCcH-HHHh
Confidence 11222 6999999999999999999 99999999999999999999999999752 44555577875 6778
Q ss_pred hcccEEEe----cCCeEEEec
Q 046196 393 LFDDLILL----SDGQIVYQG 409 (1436)
Q Consensus 393 ~~D~iivL----~~G~iv~~G 409 (1436)
.||++++| ++|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987654
No 116
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.86 E-value=6.4e-25 Score=240.53 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=100.4
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcH
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
+++.+|+|| ++||+++|+||||||||||+++|+|. + +.+|+|............++.+||++|+.
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 345789996 89999999999999999999999998 6 56777632111111122456789999975
Q ss_pred HHHH-HHHH----HhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 046196 942 YESL-VYSA----WLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1016 (1436)
Q Consensus 942 ~e~l-~~~~----~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDE 1016 (1436)
+||+ .+.. .+.. ... .+.++++++. + + |||||++|||+|+.+|++|+|||
T Consensus 76 ~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4444 2210 1110 001 1124445543 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1017 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1017 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
||+| ++..+++.|+++ ++|+||| +||+++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 889999999998 6689999 999965
No 117
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.84 E-value=8.4e-21 Score=226.17 Aligned_cols=81 Identities=22% Similarity=0.370 Sum_probs=74.3
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeE
Q 046196 988 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+++|+++ ....+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999964 47789999
Q ss_pred EEEecCcEEE
Q 046196 1062 LLMKRGGEEI 1071 (1436)
Q Consensus 1062 ~~l~~Gg~~~ 1071 (1436)
++|++ |+++
T Consensus 355 ~~l~~-G~i~ 363 (365)
T 3qf7_A 355 LRITG-GVVV 363 (365)
T ss_dssp EEEET-TEEC
T ss_pred EEEEC-CEEE
Confidence 99996 6664
No 118
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=5.5e-21 Score=224.47 Aligned_cols=86 Identities=21% Similarity=0.234 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeE--
Q 046196 988 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL-- 1061 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~----~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v-- 1061 (1436)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. +|.|||+|+|++. +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 4579999999999999997 6889999999999999999999999999984 4889999999964 67789987
Q ss_pred EEEecCcEEEEEcCC
Q 046196 1062 LLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1062 ~~l~~Gg~~~y~G~~ 1076 (1436)
++|.+|+..+.....
T Consensus 294 v~~~~g~s~~~~~~~ 308 (322)
T 1e69_A 294 VTMVNGVSAIVPVEV 308 (322)
T ss_dssp EEESSSCEEEEECCC
T ss_pred EEEeCCEEEEEEEEc
Confidence 888877766666554
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.83 E-value=5.5e-22 Score=211.19 Aligned_cols=143 Identities=14% Similarity=0.183 Sum_probs=100.2
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCC-CCCcHHHHHHH
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS-PHVTVYESLVY 947 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~-~~lTv~e~l~~ 947 (1436)
||||++++||+++|+||||||||||++++.+-.. .+++ . ...|+++|+.... ..-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 0 1225666653210 0001111111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH---
Q 046196 948 SAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1024 (1436)
Q Consensus 948 ~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~--- 1024 (1436)
.. .+.....+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 64 ----------------~~-~~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YI-VSKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HH-HHHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HH-HHHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11 1122233544444432 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1025 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1025 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
....+++.|+++.++|.|+|+++|+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 568899999888777999999999964
No 120
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.83 E-value=8.9e-23 Score=223.54 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=96.7
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC--CccccceEEEecCCCCcCCC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGME--EFVPQRTSAYISQNDLHIGE 242 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~~~~~~~yv~Q~~~~~~~ 242 (1436)
.++++|+|| ++|++++|+|||||||||||++|+|. +|+ +|+|.. .++. ....++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~--~~~~~~~~~~~~~ig~v~q~~----- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSR--IILTRPAVEAGEKLGFLPGTL----- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSE--EEEEECSCCTTCCCCSSCC-------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeee--EEecCCchhhhcceEEecCCH-----
Confidence 345689996 89999999999999999999999999 886 788732 1111 112245799999975
Q ss_pred CCHHHHH-HhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 243 MTVRETL-AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 243 lTV~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
+||+ .+..... + .+. .. . ....++.+++. |
T Consensus 76 ---~enl~~~~~~~~------~---~~~------~~-~-----------------~~~~~~~~l~~-g------------ 106 (208)
T 3b85_A 76 ---NEKIDPYLRPLH------D---ALR------DM-V-----------------EPEVIPKLMEA-G------------ 106 (208)
T ss_dssp -------CTTTHHHH------H---HHT------TT-S-----------------CTTHHHHHHHT-T------------
T ss_pred ---HHHHHHHHHHHH------H---HHH------Hh-c-----------------cHHHHHHHHHh-C------------
Confidence 6776 4431100 0 000 00 0 00112233332 2
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPET 390 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 390 (1436)
+ ||||||+|||||+.+|++|||||||+| ++..+.+.|+++ . .+++|+ ++|+..++
T Consensus 107 ----l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 ----I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp ----S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred ----C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 2 999999999999999999999999999 888899988876 2 356677 78876544
No 121
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.83 E-value=1.9e-20 Score=223.20 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=73.2
Q ss_pred cccccCChhhhhHHHHHHHHh------cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhc
Q 046196 321 EMLRGISGGQRKRLTTGEMLV------GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELF 394 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~------~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 394 (1436)
+.+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.. .+.+|+.++|+... .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~--~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER--LNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG--SSSEEEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCCEEEEEecchHH-HHhC
Confidence 456679999999999999999 79999999999999999999999999998754 35566667888765 7889
Q ss_pred ccEEEecCCeEEE
Q 046196 395 DDLILLSDGQIVY 407 (1436)
Q Consensus 395 D~iivL~~G~iv~ 407 (1436)
|+|++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999975
No 122
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.82 E-value=3.1e-23 Score=238.58 Aligned_cols=157 Identities=15% Similarity=0.205 Sum_probs=117.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+|+|+.|++|++++|+||||||||||+++|+|++ +|+|. +|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~---------------~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL---------------SFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE---------------CGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE---------------EEecCcccccc-ccHH
Confidence 45899999999999999999999999999999999997 58883 46778776554 5888
Q ss_pred H-HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 247 E-TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 247 E-~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
| ||.|+... .. .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------------~~-----------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------------TH-----------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------------CH-----------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------------cH-----------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 7 88774210 00 011123332 454444 2 46
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||| |||++.+|+||| ||+||+.+...|.. + +| ..++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH-~~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HS-RVQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TT-TEEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hC-CHHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999887752 1 23 23345689999 9999999
Q ss_pred EEecChhHHHHHHHh
Q 046196 406 VYQGPRENVLEFFER 420 (1436)
Q Consensus 406 v~~G~~~~~~~~f~~ 420 (1436)
++.|+++++..+|.+
T Consensus 256 v~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 256 PFNITDADWKSFFVR 270 (305)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHH
Confidence 999999999666654
No 123
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=5.8e-23 Score=245.95 Aligned_cols=171 Identities=14% Similarity=0.162 Sum_probs=135.1
Q ss_pred ccccccceEEEeCCe--------------------EEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCccccc
Q 046196 864 LEFLKGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFA 923 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge--------------------~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~ 923 (1436)
+.+|++||+++++|+ ++||+||||||||||+|+|+|..+ +.+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 458999999999999 999999999999999999999887 56899999987643
Q ss_pred ceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH--HHHHHHH
Q 046196 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE--QRKRLTI 1001 (1436)
Q Consensus 924 ~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG--qrqRl~i 1001 (1436)
+ .+|++|++ .++++|+.|++.+.. + +..+++.++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899975 577899999875431 1 11257889999987653322 28999 9999999
Q ss_pred HHHHhh----------CCCcceeeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCCCH-HHHHhhCeE
Q 046196 1002 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFDAFDEL 1061 (1436)
Q Consensus 1002 A~aL~~----------~p~illlDEPTsgLD~~~~~~i~~~l~~~~-----~~----g~tvi~~~H~~~~-~~~~~~D~v 1061 (1436)
|++|+. +|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+. ++-+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 22 2678899998652 255556655
Q ss_pred E
Q 046196 1062 L 1062 (1436)
Q Consensus 1062 ~ 1062 (1436)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 3
No 124
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.80 E-value=4.1e-20 Score=217.05 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=69.4
Q ss_pred cccCChhhhhHHHHHHHHh----cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE-
Q 046196 323 LRGISGGQRKRLTTGEMLV----GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL- 397 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~----~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i- 397 (1436)
+..||||||||++||++|+ .+|++|+|||||++||+.....+.+.++++. ++++++.++|. .++.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~---~~~~vi~~tH~-~~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS---KHTQFIVITHN-KIVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT---TTSEEEEECCC-TTGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECC-HHHHhhCceEE
Confidence 4579999999999999997 6899999999999999999999999999863 24555657777 5678899986
Q ss_pred -EEecCCeE-EEecChhHH
Q 046196 398 -ILLSDGQI-VYQGPRENV 414 (1436)
Q Consensus 398 -ivL~~G~i-v~~G~~~~~ 414 (1436)
++|.+|+. +.....++.
T Consensus 293 ~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEEESSSCEEEEECCC---
T ss_pred EEEEeCCEEEEEEEEcchh
Confidence 78887754 444444443
No 125
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.80 E-value=7e-22 Score=236.59 Aligned_cols=172 Identities=12% Similarity=0.096 Sum_probs=132.2
Q ss_pred ceeeecceEEEeCCe--------------------EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc
Q 046196 167 LTILHDVSGIIKPQR--------------------LTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP 226 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~ 226 (1436)
..+|+|||+.+++|+ +++|+||||||||||+|+|+|.++|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 458999999999999 99999999999999999999999988 899999997653
Q ss_pred cceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHH
Q 046196 227 QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLK 306 (1436)
Q Consensus 227 ~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (1436)
+ .+|++|++ .++.+|+.||+.++.. + ..++.+++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~------~-------------------------------------~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST------N-------------------------------------FPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS------S-------------------------------------CCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch------H-------------------------------------HHHHHHHH
Confidence 1 27899985 4778899888755410 0 01244677
Q ss_pred HhCCcccccccccCcccccCChh--hhhHHHHHHHHhc----------CCceeEEeCCCCCCChHHHHHHHHHHHHHHH-
Q 046196 307 ILGLEVCADTMVGDEMLRGISGG--QRKRLTTGEMLVG----------PARALFMDEISTGLDSSTTYQIVNSLRQSIH- 373 (1436)
Q Consensus 307 ~lgL~~~~dt~vg~~~~~~LSGG--qkqRvsia~al~~----------~~~illLDEptsgLD~~t~~~i~~~l~~~~~- 373 (1436)
.++|.+... . .. |||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~~-~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYDF-F-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCSE-E-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccCC-e-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 788765421 1 22 9999 9999999999999 9999999999999999999999999998752
Q ss_pred ---hc---CCeEEEEEecCchh--HHHhcccEE
Q 046196 374 ---IL---NGTAVISLLQPAPE--TYELFDDLI 398 (1436)
Q Consensus 374 ---~~---~~t~ii~i~q~~~~--~~~~~D~ii 398 (1436)
.. ..++++...|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 13555545555554 777777763
No 126
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.79 E-value=6.9e-23 Score=225.24 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=117.8
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHH
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
...+++| .++++||+++|+||||||||||+++|+|..+ .+.+.+.+.+.+... ..++.++|++|+...++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 3457888 6999999999999999999999999999874 233333333322211 1235689999998777778887
Q ss_pred HHHHHHHHhcC---CCCCCHHHHHHHHHHH------HHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 046196 943 ESLVYSAWLRL---PPEVDSDTRKMFVEEV------MELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1013 (1436)
Q Consensus 943 e~l~~~~~l~~---~~~~~~~~~~~~v~~v------l~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~ill 1013 (1436)
|++........ ....+.++.++.+++. ++.+++.+.++.. ++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHH
Confidence 77632110000 0011233333444444 4444554444443 23566 8899999999
Q ss_pred eeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 1014 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 1014 lDEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
|||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++...+|++++|.+.|
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 99999998 78899999999999874 4899999999986 6888999999996544
No 127
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.78 E-value=1.8e-20 Score=199.38 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=54.5
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChH----------------HHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSS----------------TTYQIVNSLRQSIHILNGTAVISLLQPAP 388 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~----------------t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 388 (1436)
..|||||||++||+++..+|++++|||||++||+. ...++.+.++++.+. +.+++.++|+..
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~--g~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE--GFRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH--TCSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc--CCcEEEEeCCHH
Confidence 36999999999999999999999999999999999 558888888877543 455556788876
Q ss_pred hHH
Q 046196 389 ETY 391 (1436)
Q Consensus 389 ~~~ 391 (1436)
++.
T Consensus 161 ~~~ 163 (171)
T 4gp7_A 161 EVE 163 (171)
T ss_dssp HHH
T ss_pred Hhh
Confidence 664
No 128
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.78 E-value=3.4e-20 Score=198.27 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPR 261 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~ 261 (1436)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 22333221 1111001245689999975 222222 10 00
Q ss_pred hhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHH--
Q 046196 262 YEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEM-- 339 (1436)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~a-- 339 (1436)
+... +..+ ++.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhcc
Confidence 0000 0111 23345699999999999996
Q ss_pred ---HhcCCceeEEeC--CCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEe--cCchhHHHhcccEEEecCCeEEE
Q 046196 340 ---LVGPARALFMDE--ISTGLDSSTTYQIVNSLRQSIHILNGTAVISLL--QPAPETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 340 ---l~~~~~illLDE--ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~--q~~~~~~~~~D~iivL~~G~iv~ 407 (1436)
++.+|++++||| ||++||+.....+.+.+++ .+.+++++.| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999988888865 2445666664 677888888887 5677665
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.78 E-value=3.7e-20 Score=198.00 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=99.1
Q ss_pred EEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP 955 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~ 955 (1436)
.++|+||||||||||+++|+|... |.++|.+.... ..++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcC--
Confidence 589999999999999999999763 22333322110 2345689999975 233332 1 11100
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCCcceeeC--CCCCCCHHHHHH
Q 046196 956 EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1028 (1436)
Q Consensus 956 ~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~a-----L~~~p~illlDE--PTsgLD~~~~~~ 1028 (1436)
. -.+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 65 --~----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 --T----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp --C----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred --C----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 00122222 34699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEec---CCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 1029 VMRTVRNTVDTGRTVVCTIH---QPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 1029 i~~~l~~~~~~g~tvi~~~H---~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~ 161 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELT 161 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECC
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEec
Confidence 9988875 4678899986 432 45566776 346665533
No 130
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.74 E-value=2.3e-20 Score=212.82 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=97.1
Q ss_pred EEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVD 958 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~ 958 (1436)
.++|+||||||||||+|+|+|... +.+|+|.++|.++.....++.++|++|++.+++.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 479999999999999999999876 5689999999887555556789999999999999999999988653321 111
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh
Q 046196 959 SDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038 (1436)
Q Consensus 959 ~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~ 1038 (1436)
. +.+.+.++ .+..+... ..||||||||++|||+++. ++||||||.|||+.. .+.++++.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 11223332 33344443 3699999999999999876 999999999999987 445566655
Q ss_pred CCCEEEEEecCC
Q 046196 1039 TGRTVVCTIHQP 1050 (1436)
Q Consensus 1039 ~g~tvi~~~H~~ 1050 (1436)
. .+||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999974
No 131
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.74 E-value=2.2e-19 Score=207.75 Aligned_cols=174 Identities=15% Similarity=0.154 Sum_probs=125.8
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---------ccceEEEecCCCC-c
Q 046196 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---------PQRTSAYISQNDL-H 239 (1436)
Q Consensus 170 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~~~-~ 239 (1436)
++++|+.+++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.+..... .+..++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999887 899999998865421 1235899999987 8
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
.+.+||+|++.++... +. + ..+++.+|+.+..+..+
T Consensus 167 ~~~~~v~e~l~~~~~~-~~----d--------------------------------------~~lldt~gl~~~~~~~~- 202 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY----D--------------------------------------VVLCDTSGRLHTNYSLM- 202 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC----S--------------------------------------EEEECCCCCSSCCHHHH-
T ss_pred CHHHHHHHHHHHHHHc-CC----c--------------------------------------chHHhcCCCCcchhHHH-
Confidence 8899999999876321 00 0 00234566665555444
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCc--eeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecC---------ch
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPAR--ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP---------AP 388 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~--illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~---------~~ 388 (1436)
..|| |||++||+++..+|+ +|+|| ||+|||+.+.. +++.+..+.+.++ ++|. ..
T Consensus 203 ----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 203 ----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 4599 999999999999999 99999 99999998642 3333223444444 5662 12
Q ss_pred hHHHhcccEEEecCCeE
Q 046196 389 ETYELFDDLILLSDGQI 405 (1436)
Q Consensus 389 ~~~~~~D~iivL~~G~i 405 (1436)
......+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 23344567788888854
No 132
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.73 E-value=1.8e-19 Score=208.46 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=119.8
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-------cc--cceEEEeecCCC-CC
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-------TF--ARISGYCEQTDI-HS 936 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~ 936 (1436)
++++|+.+++|++++|+||||||||||++.|+|... +.+|+|.++|.+.... .+ ++.++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 457889999999999999999999999999999876 4579999999876431 12 235899999988 88
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--ccee
Q 046196 937 PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1014 (1436)
Q Consensus 937 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~--illl 1014 (1436)
|.+|++|++.+... + ..+ ..+++.+|+.+..+... .+|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~---~~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T---TCS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c---CCc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 89999999987542 1 111 13456677776666553 3688 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 046196 1015 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1049 (1436)
Q Consensus 1015 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1049 (1436)
| ||+|||+.+.. +++. +.|.|+|++||.
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCC
Confidence 9 99999987542 4444 348999999994
No 133
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.73 E-value=1.2e-17 Score=197.06 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=75.3
Q ss_pred Ccccc-cCChhhhhHHHHHHHHh---------cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchh
Q 046196 320 DEMLR-GISGGQRKRLTTGEMLV---------GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPE 389 (1436)
Q Consensus 320 ~~~~~-~LSGGqkqRvsia~al~---------~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 389 (1436)
+..++ .+|||||||++||++|+ ++|+||||||||++||+..+..+++.++++ . .++|+++|. .+
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 45566 69999999999999999 899999999999999999999999999874 2 567777774 33
Q ss_pred HHHhcccEEEecCCeEEEecChhHH
Q 046196 390 TYELFDDLILLSDGQIVYQGPRENV 414 (1436)
Q Consensus 390 ~~~~~D~iivL~~G~iv~~G~~~~~ 414 (1436)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998865
No 134
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.73 E-value=3.4e-19 Score=209.12 Aligned_cols=131 Identities=17% Similarity=0.132 Sum_probs=105.0
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-ccccceEEEeecCCCCCCCCcHHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-ETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
+++++|+.+++|++++|+||||||||||+++|+|..+ +.+|.|.++|.+... ...++.++++.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 8999999999999999999999999999999999887 468999999864211 00112222221
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
+ |||+||++||++|..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 1025 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 1025 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
.+++.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|+
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 356677776543458999999986 677899999998753
No 135
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.72 E-value=1.7e-21 Score=224.18 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=122.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. +.+|+++|++|++|++++|+||||||||||+++|+|.. +|+|.
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~------- 155 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL------- 155 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE-------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE-------
Confidence 66778877652 24899999999999999999999999999999999975 47773
Q ss_pred cccccceEEEeecCCCCCCCCcHHH-HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 QETFARISGYCEQTDIHSPHVTVYE-SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~~~~~~~~gyv~q~~~~~~~lTv~e-~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
+|++|+..+++ .|++| |+.|.. ..+. .+.+.++.+ |.+..+ +..|||||||
T Consensus 156 --------~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQ 207 (305)
T 2v9p_A 156 --------SFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKH 207 (305)
T ss_dssp --------CGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSS
T ss_pred --------EEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHH
Confidence 45667666554 46776 665421 1111 234455543 332222 2479999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLG 1077 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~ 1077 (1436)
| ||||+++|+||+ ||+||+.+...+.. .+|+++ .+..+|+| +|++ |++++.|+.
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~- 261 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD- 261 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH-
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH-
Confidence 9 999999999999 99999999988762 178865 45789999 9985 789988875
Q ss_pred cchhHHHHHhhhC
Q 046196 1078 RHCSQLIKYFEGI 1090 (1436)
Q Consensus 1078 ~~~~~~~~yf~~~ 1090 (1436)
.++..+|..+
T Consensus 262 ---~el~~~y~~l 271 (305)
T 2v9p_A 262 ---ADWKSFFVRL 271 (305)
T ss_dssp ---HHHHHHHHHS
T ss_pred ---HHHHHHHHHH
Confidence 4455666554
No 136
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.72 E-value=1.6e-19 Score=219.00 Aligned_cols=190 Identities=14% Similarity=0.085 Sum_probs=143.7
Q ss_pred hhcccCCCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc---cCCCc--------
Q 046196 156 YLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH---GMEEF-------- 224 (1436)
Q Consensus 156 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~-------- 224 (1436)
..++...+....++|+++ +.+.+|++++|+|||||||||||++|+|..+++ +|.|.++|+ ++.++
T Consensus 134 ~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~ 209 (438)
T 2dpy_A 134 RTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPD 209 (438)
T ss_dssp SCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHH
T ss_pred EeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhcccc
Confidence 334444443345699999 999999999999999999999999999999988 899999998 45432
Q ss_pred cccceEEEecCC-CCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHH
Q 046196 225 VPQRTSAYISQN-DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDY 303 (1436)
Q Consensus 225 ~~~~~~~yv~Q~-~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1436)
..++.++|++|+ +..++.+||.+|+.+.++.... +. .+
T Consensus 210 ~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~--------------------- 248 (438)
T 2dpy_A 210 GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD--------------RG------QH--------------------- 248 (438)
T ss_dssp HHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CE---------------------
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CC---------------------
Confidence 124679999995 5667788999999886543110 00 00
Q ss_pred HHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHh--cCCe---
Q 046196 304 VLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI--LNGT--- 378 (1436)
Q Consensus 304 ~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~--~~~t--- 378 (1436)
.....| .+..+|||| |||+|| +.+|++ |+|||+.+...+.+.++++.+. .++.
T Consensus 249 ------v~~~ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~ 306 (438)
T 2dpy_A 249 ------VLLIMD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITA 306 (438)
T ss_dssp ------EEEEEE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEE
T ss_pred ------HHHHHH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccc
Confidence 000011 123599999 999999 888887 9999999999999999886431 1243
Q ss_pred --EEEEEecCchhHHHhcccEEEecCCeEEEecChhHH
Q 046196 379 --AVISLLQPAPETYELFDDLILLSDGQIVYQGPRENV 414 (1436)
Q Consensus 379 --~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~ 414 (1436)
+|+..+|+.. ...+|++++|.+|+++..|++.++
T Consensus 307 ~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 307 FYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp EEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred eeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 6666777776 678999999999999999988765
No 137
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.72 E-value=4.3e-19 Score=202.38 Aligned_cols=147 Identities=13% Similarity=0.126 Sum_probs=88.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPR 261 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~ 261 (1436)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47899999999999999999999987 89999999887654445789999999999999999999998754321000
Q ss_pred hhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHh
Q 046196 262 YEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341 (1436)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~ 341 (1436)
.+.+.+. +. ....+.. ...||||||||+++||+++
T Consensus 80 ---------------------~~~i~~~---------------~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 ---------------------WEPIEKY---------------IN----EQYEKFL-----KEEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp ---------------------SHHHHHH---------------HH----HHHHHHH-----HHHSCTTCCSSCCCCSCCE
T ss_pred ---------------------HHHHHHH---------------HH----HHHHhhh-----HHhcCcccchhhhhheeee
Confidence 0000000 00 1111222 2359999999999999987
Q ss_pred cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCc
Q 046196 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPA 387 (1436)
Q Consensus 342 ~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 387 (1436)
. +++||||+.|||+.. .+.++.+.. ..++|+ +.+..
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~--~~~vI~-Vi~K~ 150 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSK--VVNIIP-VIAKA 150 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHT--TSEEEE-EETTG
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHh--cCcEEE-EEecc
Confidence 5 999999999999987 334444433 245555 44443
No 138
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.71 E-value=2.6e-21 Score=214.33 Aligned_cols=177 Identities=10% Similarity=-0.011 Sum_probs=108.2
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc----cccceEEEeecCCCCCCCCc
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE----TFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~~~~~lT 940 (1436)
.-|+||||++++|++++|+||||||||||+++|+|.. + |+|.+ |.+.... ..++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 3699999999999999999999999999999999976 2 77888 7654211 12356789999866554332
Q ss_pred H-HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCCccee
Q 046196 941 V-YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIFM 1014 (1436)
Q Consensus 941 v-~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~i-----A~aL~~~p~illl 1014 (1436)
. .+++.+. .... ..... ....++++++..++. ..+ ..+|||||||++| +++++.+|++++|
T Consensus 85 ~~~~~l~~~-~~~~--~~~g~-~~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 85 KNEDFLEYD-NYAN--NFYGT-LKSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HTTCEEEEE-EETT--EEEEE-EHHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hccchhhhh-hccc--ccCCC-cHHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 1 1111100 0000 00000 012356666654332 111 2589999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCCCHHHHHhhCeE
Q 046196 1015 DEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 1015 DEPTsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
||||+++|..+...+.+.++++.+ .+.+.|++.|+++ +.+...|++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~i 204 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNY 204 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHH
Confidence 999999999999999998887643 2344555555543 344444443
No 139
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.71 E-value=8.8e-21 Score=210.04 Aligned_cols=154 Identities=13% Similarity=0.100 Sum_probs=96.9
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCCCC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~lT 244 (1436)
-|+|||+++++|++++|+||||||||||+++|+|++ | |+|.+ |.+.....+ .+.++|++|++..++.++
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 699999999999999999999999999999999987 4 78888 776543222 346889999876554432
Q ss_pred H-HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 245 V-RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 245 V-~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
. .+++.++ ...+ ..|... ...++.+++...+ ..+.
T Consensus 85 ~~~~~l~~~-~~~~--~~~g~~--------------------------------~~~i~~~l~~~~~-----~il~---- 120 (218)
T 1z6g_A 85 KNEDFLEYD-NYAN--NFYGTL--------------------------------KSEYDKAKEQNKI-----CLFE---- 120 (218)
T ss_dssp HTTCEEEEE-EETT--EEEEEE--------------------------------HHHHHHHHHTTCE-----EEEE----
T ss_pred hccchhhhh-hccc--ccCCCc--------------------------------HHHHHHHHhCCCc-----EEEE----
Confidence 1 1111111 0000 000000 0012223332221 1221
Q ss_pred ccCChhhhhHHHH-----HHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHH
Q 046196 324 RGISGGQRKRLTT-----GEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIH 373 (1436)
Q Consensus 324 ~~LSGGqkqRvsi-----a~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~ 373 (1436)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.+...
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3599999999999 8999999999999999999999999999998877543
No 140
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.70 E-value=5.6e-19 Score=207.98 Aligned_cols=153 Identities=15% Similarity=0.146 Sum_probs=120.6
Q ss_pred ccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-------cc--cceEEEeecCCC-CCC
Q 046196 868 KGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-------TF--ARISGYCEQTDI-HSP 937 (1436)
Q Consensus 868 ~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~~ 937 (1436)
+++|+.+++|++++|+||||||||||++.|+|... +.+|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788899999999999999999999999999876 4579999999876431 12 235899999988 888
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--cceee
Q 046196 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1015 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~--illlD 1015 (1436)
..|++|++.+.... ..+ ..+++.+|+.+..+... .+|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~----~~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHT----TCS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhC----CCH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 99999999876421 111 12455677776666553 3688 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1049 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1049 (1436)
||+|||+.+.. +++.+ .|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999988653 34443 48999999994
No 141
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.70 E-value=1.8e-18 Score=203.59 Aligned_cols=173 Identities=15% Similarity=0.159 Sum_probs=126.2
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---------ccceEEEecCCCC-cC
Q 046196 171 HDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---------PQRTSAYISQNDL-HI 240 (1436)
Q Consensus 171 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~~~-~~ 240 (1436)
+++|+.+++|++++|+||||||||||++.|+|.+.++ +|+|.++|.++.... .+..++|++|++. ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 5688999999999999999999999999999999887 899999998875321 1235899999987 88
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+|++.++... +. + ..+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~~----d--------------------------------------~~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY----D--------------------------------------VVLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC----S--------------------------------------EEEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-CC----H--------------------------------------HHHHHhcCCChhhhhHH--
Confidence 899999999886321 00 0 00234556665544433
Q ss_pred cccccCChhhhhHHHHHHHHhcCCc--eeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecC---------chh
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPAR--ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP---------APE 389 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~--illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~---------~~~ 389 (1436)
..|| |||++||+++..+|+ +|+|| ||+|||+.+.. +++.+..+.+.|+ ++|. ..-
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 4599 999999999999999 99999 99999998653 2332223444444 6662 122
Q ss_pred HHHhcccEEEecCCeE
Q 046196 390 TYELFDDLILLSDGQI 405 (1436)
Q Consensus 390 ~~~~~D~iivL~~G~i 405 (1436)
.....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 3345567777777753
No 142
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.69 E-value=7.8e-19 Score=213.02 Aligned_cols=175 Identities=15% Similarity=0.093 Sum_probs=137.0
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc---cCCc--------ccccceEEEeec
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY---PKNQ--------ETFARISGYCEQ 931 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~gyv~q 931 (1436)
+..+|+++ +.+.+|++++|+||||||||||+++|+|..+ +..|.|.++|. +... ...++.++|++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 35699999 9999999999999999999999999999876 46899999998 3321 234577999999
Q ss_pred C-CCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 046196 932 T-DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS 1010 (1436)
Q Consensus 932 ~-~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~ 1010 (1436)
+ +..++.+||.+++.+.+....... . ....+.|. ...||+|| ||++|| +.+|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~~~----------~------~v~~~ld~------l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRDRG----------Q------HVLLIMDS------LTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTT----------C------EEEEEEEC------HHHHHHHH-HHHHHH---TTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCC----------C------CHHHHHHh------HHHHHHHH-HHHHHH---hCCCc
Confidence 5 556678899999987654321000 0 00011121 24699999 999999 88998
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1011 IIFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1011 illlDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+ |+|||+.+...+.+.++++.+ + |+ ||++++||.+ ...+|++++|.+ |+++..|..
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 8 999999999999999999866 3 64 9999999987 356899999986 799888753
No 143
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.69 E-value=7.1e-20 Score=201.15 Aligned_cols=184 Identities=11% Similarity=0.062 Sum_probs=111.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+| ..+++|++++|+||||||||||+++|+|.++. . .+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~-i--~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN-L--HFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT-C--EECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc-e--EEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 69999999999999999999999999999852 2 3333232322211 1235689999998878888888
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHH------HHHhCCcccccccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYV------LKILGLEVCADTMVGD 320 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg~ 320 (1436)
|++.+.....+....+.. .+.+ ....++.. ++.+|+.+.++..
T Consensus 83 ~~l~~~~~~~~n~~~~g~----~~~~------------------------~~~~~~~~~~~~~~l~~~gl~~~~~~~--- 131 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGT----LAQP------------------------VRAAAATGVPVLIEVDLAGARAIKKTM--- 131 (207)
T ss_dssp TCEEEEEEEGGGTEEEEE----EHHH------------------------HHHHHHHTCCEEEECCHHHHHHHHHHC---
T ss_pred CCceeehhhcCchhhcCC----cHHH------------------------HHHHHHcCCeEEEEeCHHHHHHHHHhc---
Confidence 887543211100000000 0000 00011111 2233333333322
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCC----ChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGL----DSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgL----D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
++.|| +|+.+|++++|||||+|+ |+..+..+.+.++++.+.. +.+++.++|+..++..++|+
T Consensus 132 --~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 132 --PEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQG-DFDKVVVNRRLESACAELVS 197 (207)
T ss_dssp --TTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGG-GSSEEEECSSHHHHHHHHHH
T ss_pred --CCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhc-cCcEEEECCCHHHHHHHHHH
Confidence 23466 889999999999999998 6778999999999886533 45556689999999999999
Q ss_pred EEEec
Q 046196 397 LILLS 401 (1436)
Q Consensus 397 iivL~ 401 (1436)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
No 144
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.69 E-value=8.6e-17 Score=190.10 Aligned_cols=77 Identities=23% Similarity=0.342 Sum_probs=69.3
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeE
Q 046196 988 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 988 ~~~LSgGqrq------Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||+++|++ ++.+.+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 4679999999 67778888889999999999999999999999999999877789999999995 467889999
Q ss_pred EEEec
Q 046196 1062 LLMKR 1066 (1436)
Q Consensus 1062 ~~l~~ 1066 (1436)
++|..
T Consensus 324 ~~l~~ 328 (339)
T 3qkt_A 324 IRISL 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99963
No 145
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.68 E-value=9e-18 Score=194.89 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=117.9
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeE-EEEECCccCCcccccceEEEeecCCCCCCCCcHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSG-SITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
..+|+++++.+++|++++|+||||||||||++.|+|... +.+| .|.+.+.........+.+.++.+.. .+++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~----~~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRV----RLRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTC----CGGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCC----Chhhc
Confidence 358999999999999999999999999999999999764 2346 5654443333222222222232221 12333
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH-HHHHHHHHHHhhCCCcceeeCCCC--
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS-- 1019 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGq-rqRl~iA~aL~~~p~illlDEPTs-- 1019 (1436)
+++.... + +.++..+.++++++..++. +.+. ...+|.+| +||+. |+++..+|++|++||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4443221 1 1122223334443322221 1111 13589999 66666 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCC-H--------------------HHHHhhCeEEEEecCc
Q 046196 1020 -G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-I--------------------DIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 1020 -g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~~-~--------------------~~~~~~D~v~~l~~Gg 1068 (1436)
+ +|. .....+++.|++++++ |+|||+++|+.. . .+...+|+|++|.+|.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 5 555 6778899999999765 999999999952 1 4667899999999753
No 146
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.67 E-value=8.9e-18 Score=197.07 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=100.4
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 248 (1436)
+++++|+.+++|++++|+||||||||||+++|+|+++|+ +|.|+++|.+ +.. .+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~------ 214 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKH------ 214 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSS------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------ccc------
Confidence 799999999999999999999999999999999999997 8999999853 110 000
Q ss_pred HHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 046196 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328 (1436)
Q Consensus 249 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 328 (1436)
.+ .. .+ .+ .+ |
T Consensus 215 ----~~-----~~----------------------------------------------i~-------~~-----~g--g 225 (330)
T 2pt7_A 215 ----HK-----NY----------------------------------------------TQ-------LF-----FG--G 225 (330)
T ss_dssp ----CS-----SE----------------------------------------------EE-------EE-----CB--T
T ss_pred ----ch-----hE----------------------------------------------EE-------EE-----eC--C
Confidence 00 00 00 00 01 8
Q ss_pred hhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 329 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
||+||++||+||..+|++++|||||+. ++.+.|+.+. .+++++++++|... +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~--~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC--SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH--TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh--cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3456666653 24444444555544 8889999999998854
No 147
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.67 E-value=1.1e-16 Score=188.70 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCe
Q 046196 990 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDE 1060 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~---------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1060 (1436)
.||||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. + . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998873 799999994 3 2 7899
Q ss_pred EEEEecCcEEEEEcCC
Q 046196 1061 LLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1061 v~~l~~Gg~~~y~G~~ 1076 (1436)
+++|++ |+++..|+.
T Consensus 337 i~~l~~-G~i~~~g~~ 351 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADE 351 (359)
T ss_dssp EEEEET-TEEEECCCT
T ss_pred EEEEEC-CEEEecCCH
Confidence 999986 789888876
No 148
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.65 E-value=1.2e-16 Score=199.51 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=70.7
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEE
Q 046196 988 VSGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 988 ~~~L-SgGqrqRl~iA~aL~~~p--~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1064 (1436)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. +...+|++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 899999999964 55679999999
Q ss_pred ecC
Q 046196 1065 KRG 1067 (1436)
Q Consensus 1065 ~~G 1067 (1436)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 764
No 149
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.65 E-value=3.7e-18 Score=198.43 Aligned_cols=128 Identities=9% Similarity=0.009 Sum_probs=95.9
Q ss_pred cceE-EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHH
Q 046196 172 DVSG-IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 172 ~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
|+|. .+++|++++|+||||||||||+++|+|.++|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 4444 37999999999999999999999999999875 342 358999999998888 9999986
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
+... .+.... .+ .......|+.++ ....++.+ ..+||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 5321 111000 00 112334566666 33333333 4699999
Q ss_pred hhHHHHHHHHhcCCceeEEeCCCCCCCh
Q 046196 331 RKRLTTGEMLVGPARALFMDEISTGLDS 358 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEptsgLD~ 358 (1436)
|||+++|++++.+|+|+|||||+..+|.
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
No 150
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.64 E-value=3.6e-19 Score=206.95 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=95.2
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~ 953 (1436)
+++|+++||+||||||||||+++|+|...+ ..| . +.++|++|++.+++. |++|++.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G------~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~-- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDH------H--------PRVDLVTTDGFLYPN-AELQRRNLMHRK-- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STT------C--------CCEEEEEGGGGBCCH-HHHHHTTCTTCT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCC------C--------CeEEEEecCccCCcc-cHHHHHHHHHhc--
Confidence 899999999999999999999999998653 222 1 347999999999888 999998542111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 954 PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 954 ~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
..+.....+.+.+.++.++ .+..+.. +..|||||+||+++|++++.+|+||+||||++.+|+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1122222344677888877 4443333 246999999999999999999999999999999986
No 151
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.64 E-value=1.2e-15 Score=180.42 Aligned_cols=81 Identities=26% Similarity=0.347 Sum_probs=67.5
Q ss_pred cccccCChhhhh------HHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhc
Q 046196 321 EMLRGISGGQRK------RLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELF 394 (1436)
Q Consensus 321 ~~~~~LSGGqkq------Rvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 394 (1436)
+.+..||||||| |+++|++++.+|++|+|||||+|||+.....+.+.|+++.. . +.+|+.++|+ .++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~-~~~vi~~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-K-IPQVILVSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-G-SSEEEEEESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEECh-HHHHHhC
Confidence 345679999999 67788889999999999999999999999999999998754 2 3455657787 5688999
Q ss_pred ccEEEec--CCe
Q 046196 395 DDLILLS--DGQ 404 (1436)
Q Consensus 395 D~iivL~--~G~ 404 (1436)
|+|++|+ +|.
T Consensus 321 d~~~~l~~~~g~ 332 (339)
T 3qkt_A 321 DHVIRISLENGS 332 (339)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEecCCc
Confidence 9999985 554
No 152
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.63 E-value=7.4e-16 Score=192.41 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=67.0
Q ss_pred cccC-ChhhhhHHHHHHHHhcCC--ceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 323 LRGI-SGGQRKRLTTGEMLVGPA--RALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 323 ~~~L-SGGqkqRvsia~al~~~~--~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+..| ||||||||+||++|+.+| ++|||||||+|||..++..|.+.|+++++ +.+|+.++|.. ++...||++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~---~~~vi~itH~~-~~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD---TRQVLVVTHLA-QIAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH---HSEEEEECCCH-HHHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCH-HHHHhCCEEEE
Confidence 4567 999999999999999999 99999999999999999999999999864 35566678875 46678999999
Q ss_pred ecCC
Q 046196 400 LSDG 403 (1436)
Q Consensus 400 L~~G 403 (1436)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
No 153
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.61 E-value=1.7e-16 Score=184.16 Aligned_cols=185 Identities=12% Similarity=0.054 Sum_probs=111.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce-EEEECCccCCCccccceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSG-RVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.+.+.+.......+.+.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999998775 56 66554432211000011111111110 011
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
.+++..+ .+...+....++.+++..++. +. +....
T Consensus 95 ~~~l~~~--------------------------------------~~~~~~~~~~~~~~l~~~~l~------i~-~~~~~ 129 (296)
T 1cr0_A 95 SDSLKRE--------------------------------------IIENGKFDQWFDELFGNDTFH------LY-DSFAE 129 (296)
T ss_dssp CHHHHHH--------------------------------------HHHHTHHHHHHHHHHSSSCEE------EE-CCCCS
T ss_pred ccccccC--------------------------------------CCCHHHHHHHHHHHhccCCEE------EE-CCCCC
Confidence 1111110 000001111223333222221 11 11234
Q ss_pred CChhh-hhHHHHHHHHhcCCceeEEeCCCC---C---CCh-HHHHHHHHHHHHHHHhcCCeEEEEEecCc--h-------
Q 046196 326 ISGGQ-RKRLTTGEMLVGPARALFMDEIST---G---LDS-STTYQIVNSLRQSIHILNGTAVISLLQPA--P------- 388 (1436)
Q Consensus 326 LSGGq-kqRvsia~al~~~~~illLDEpts---g---LD~-~t~~~i~~~l~~~~~~~~~t~ii~i~q~~--~------- 388 (1436)
+|.+| +||+. |+++..+|+++++||||+ + +|. .....+.+.|+++++..+.+ |+.++|.. .
T Consensus 130 ~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~-vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 130 AETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVV-LVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp CCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCE-EEEEEECC----------
T ss_pred CCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCe-EEEEEecCcccccccccc
Confidence 88888 67777 999999999999999999 5 455 66688999999988655544 55566764 3
Q ss_pred -------------hHHHhcccEEEecCCeE
Q 046196 389 -------------ETYELFDDLILLSDGQI 405 (1436)
Q Consensus 389 -------------~~~~~~D~iivL~~G~i 405 (1436)
.+...||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 154
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.61 E-value=1.2e-15 Score=157.39 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=69.8
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeE
Q 046196 988 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA------~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
+..||||||||++|| ++|+.+|++++|||||+|||+.+...+.+.|+++.++|+|||+++|++ ++...+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 468999999999886 899999999999999999999999999999999877789999999996 456789999
Q ss_pred EEEe
Q 046196 1062 LLMK 1065 (1436)
Q Consensus 1062 ~~l~ 1065 (1436)
++|+
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
No 155
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.60 E-value=2.2e-16 Score=179.01 Aligned_cols=132 Identities=19% Similarity=0.257 Sum_probs=98.1
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCce-eEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV-SGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
.+|+++| +++|++++|+||||||||||+++|+|... +. +|+|.++|.++. |++|....+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee-------
Confidence 3899999 99999999999999999999999999875 44 799999987642 222221000
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
. + + +.+++.. ..+ |++||++|..+|++|++|||| |+
T Consensus 75 -------v--~-----q----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------V--N-----Q----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------E--E-----E----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------e--e-----H----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 0 0 0 0112211 123 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 1024 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 1024 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
.+...+ ++. +..|.+|++++|+.+ ....+|+++.|..
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 886544 333 356999999999976 5678899988864
No 156
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.60 E-value=3.3e-17 Score=184.79 Aligned_cols=155 Identities=9% Similarity=-0.019 Sum_probs=98.0
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcH
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
+++.+|+|+||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3456999999999999999999999999999999999854 222222 2356689999985 6678999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
.|++.+...... ...+.....+.+.+.++.+ .+..+.. ...||+||+||+.+ ++++.+|+++++|||....
T Consensus 76 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYN-FDHPDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCC-TTSGGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCC-CCCcccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876432211 0101111122234444433 2223333 34799999999988 5788899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 046196 1022 DARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1049 (1436)
|.. ++++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 764 2232 27899999996
No 157
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.60 E-value=1.5e-16 Score=179.27 Aligned_cols=178 Identities=16% Similarity=0.099 Sum_probs=102.9
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCH
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
++++|+|+|+++++|++++|+||||||||||+++|+|.+ |.+.++ ...+.++|++|++ ++..+|+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 456999999999999999999999999999999999976 223233 1245689999986 6778999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
.|++.+.......... .. .+.+ .....|+.+ .+..+.. ...
T Consensus 76 ~~~~~~~~~~~~~~~~----~~-------------~~~~---------------~~~~~L~~l--~~~~~~~-----~~~ 116 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHP----DA-------------FDND---------------LMHRTLKNI--VEGKTVE-----VPT 116 (245)
T ss_dssp HHHHHHHTTCCCTTSG----GG-------------BCHH---------------HHHHHHHHH--HTTCCEE-----ECC
T ss_pred hHhhhhhccCCCCCCc----cc-------------ccHH---------------HHHHHHHHH--HCCCCee-----ccc
Confidence 9998775432111000 00 0011 011122222 2333333 346
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHH-hcccEEEecCCe
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYE-LFDDLILLSDGQ 404 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~-~~D~iivL~~G~ 404 (1436)
+|+||+||+.+ ++++.+|++++||||....|.. +.++ . +.+|+..+|+.....+ +++++ ++|+
T Consensus 117 ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~-~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 117 YDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---F-HLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp EETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---C-SEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred ccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---c-CeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 99999999988 5788899999999998877753 2221 2 3455555565444433 34444 6664
Q ss_pred EEEecChhHHHHHH
Q 046196 405 IVYQGPRENVLEFF 418 (1436)
Q Consensus 405 iv~~G~~~~~~~~f 418 (1436)
+.+++.+.+
T Consensus 181 -----~~e~~~~~~ 189 (245)
T 2jeo_A 181 -----DLEQILTQY 189 (245)
T ss_dssp -----CHHHHHHHH
T ss_pred -----CHHHHHHHH
Confidence 566666533
No 158
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.59 E-value=7.8e-17 Score=181.73 Aligned_cols=169 Identities=16% Similarity=0.198 Sum_probs=107.0
Q ss_pred cccce-EEEeCCeEEEEEccCCCChhHHHHhHc--CCCCCCceeEEEEECCccCCcc--cccceEEEeecCCCCCCCCcH
Q 046196 867 LKGVS-GAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYVSGSITISGYPKNQE--TFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 867 L~~vs-~~i~~Ge~~ai~G~nGaGKSTLl~~L~--g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~q~~~~~~~lTv 941 (1436)
|+++- +.|++|++++|+||||||||||+++|+ |... +..|.+.+++...... ...+.+||.+|+....+.+++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAI 96 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEE
Confidence 44432 489999999999999999999999999 5522 2356777777543211 112345676665544455555
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
.+........ .. .+... . ....+.++......+..-..+|+++++||||++|
T Consensus 97 ~~~~~~~~~~------~~-------~~~~~----------~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~l 148 (251)
T 2ehv_A 97 VDGVSSVVGL------PS-------EEKFV----------L-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIA 148 (251)
T ss_dssp EC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHH
T ss_pred EEcccccccc------cc-------cccee----------c-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHH
Confidence 5443211000 00 00000 0 0123445555444444456899999999999999
Q ss_pred C-----HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH---------HHhh-CeEEEEec
Q 046196 1022 D-----ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI---------FDAF-DELLLMKR 1066 (1436)
Q Consensus 1022 D-----~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~---------~~~~-D~v~~l~~ 1066 (1436)
| +..+..+.+.++.+++.|+|||+++|+.+. . ...+ |++++|+.
T Consensus 149 d~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 149 LRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEee
Confidence 8 667777999999988789999999999763 4 4677 99999963
No 159
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.59 E-value=1.7e-15 Score=197.74 Aligned_cols=149 Identities=14% Similarity=0.081 Sum_probs=107.2
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHc--------CCCCCCceeEEEEECCccCCcccccceEEEeecCCC
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--------GRKTGGYVSGSITISGYPKNQETFARISGYCEQTDI 934 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~ 934 (1436)
...+++|+++.+++|++++|+|||||||||||++++ |... +.++.. ++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v--pa~~~~---------------~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV--PCESAE---------------VSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB--SEEEEE---------------EECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc--cccccc---------------chHH---HH
Confidence 346899999999999999999999999999999993 3221 111110 1110 10
Q ss_pred CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCcc
Q 046196 935 HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVEL--VANPSII 1012 (1436)
Q Consensus 935 ~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL--~~~p~il 1012 (1436)
+ +..+|+. +.. .+++|++++++..+|++| +.+|+++
T Consensus 708 i----------------------------------~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 I----------------------------------LARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp E----------------------------------EEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred H----------------------------------HHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 0 0111111 111 135888888888888888 8999999
Q ss_pred eeeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1013 FMDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1013 llDEPTsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+|||||+|+|+.....+ +.+++.+.+ .|+|+|++||+. ++...+|++..+.+ |++.+.+..
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 99999999999988877 667777776 499999999995 46688999999986 688877654
No 160
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.58 E-value=2.5e-16 Score=185.50 Aligned_cols=175 Identities=15% Similarity=0.175 Sum_probs=122.1
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC----------cccccceEEEeecCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN----------QETFARISGYCEQTD 933 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~----------~~~~~~~~gyv~q~~ 933 (1436)
..+|+++ +.|.+||+++|+||||||||||+++|+|... +..|.|.+.|.+.. ...+++.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4699999 9999999999999999999999999999877 45899999886421 112345567777654
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 046196 934 IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1013 (1436)
Q Consensus 934 ~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~ill 1013 (1436)
. ...+.+.-.. ... ...+.....+ .++... . ..+..||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~-----------~~~-~~ae~~~~~~-~~vl~~-l--d~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 136 R-----PALERMKAAF-----------TAT-TIAEYFRDQG-KNVLLM-M--DSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp S-----CHHHHHHHHH-----------HHH-HHHHHHHTTT-CEEEEE-E--ETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred C-----CHHHHHHHHH-----------HHH-HHHHHHHhcc-ccHHHH-H--hhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 2 2222221000 000 0011111111 011000 0 1134699999 899999 688887
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1014 MDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1014 lDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|+|||+.....+.+.++++.+ .|. ||++++||.+ ...+|++++|.+ |+++..|+.
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999874 477 8999999987 356899999986 799988754
No 161
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.57 E-value=1.3e-16 Score=187.82 Aligned_cols=181 Identities=13% Similarity=0.143 Sum_probs=124.3
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc----------cccceEEEecC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF----------VPQRTSAYISQ 235 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------~~~~~~~yv~Q 235 (1436)
...+|+++ +.|.+|++++|+||||||||||+++|+|...|+ .|.|.+.|++..+. ..++.+.+++|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 45699999 999999999999999999999999999999988 89999988652211 11245667776
Q ss_pred CCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccc
Q 046196 236 NDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD 315 (1436)
Q Consensus 236 ~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 315 (1436)
.+. +..+.+.-... +.. ..++ ....| .|
T Consensus 134 ~~~-----~~~~r~~~~~~----------------------------------~~~--------~ae~-~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFT----------------------------------ATT--------IAEY-FRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHH----------------------------------HHH--------HHHH-HHTTT----CE
T ss_pred CCC-----CHHHHHHHHHH----------------------------------HHH--------HHHH-HHhcc----cc
Confidence 532 22222211000 000 0000 00001 01
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCe-----EEEEEecCchhH
Q 046196 316 TMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGT-----AVISLLQPAPET 390 (1436)
Q Consensus 316 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t-----~ii~i~q~~~~~ 390 (1436)
..+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.+++.....+++ +|++.+|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 000002244699999 899999 578776 99999999999999998864312355 6666778776
Q ss_pred HHhcccEEEecCCeEEEecChhHH
Q 046196 391 YELFDDLILLSDGQIVYQGPRENV 414 (1436)
Q Consensus 391 ~~~~D~iivL~~G~iv~~G~~~~~ 414 (1436)
...+|++++|.+|+|+.+|+.+++
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 578999999999999999988765
No 162
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.57 E-value=3.6e-16 Score=206.73 Aligned_cols=157 Identities=17% Similarity=0.132 Sum_probs=112.7
Q ss_pred ccccccceEEEeC-------CeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCC
Q 046196 864 LEFLKGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS 936 (1436)
Q Consensus 864 ~~iL~~vs~~i~~-------Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~ 936 (1436)
..+++|+++.+++ |++++|+|||||||||||+++ |... + .++..+||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~aqiG~~Vpq~~~-- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MAQMGCYVPAEVC-- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HHTTTCCEESSEE--
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------HhheeEEeccCcC--
Confidence 4699999999987 999999999999999999999 8653 1 1222349999753
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 046196 937 PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1016 (1436)
Q Consensus 937 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDE 1016 (1436)
.+||.|++. .+. |+.+.... +.+.+|+|+++ +++|++++.+|++++|||
T Consensus 828 -~l~v~d~I~----~ri--------------------g~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 828 -RLTPIDRVF----TRL--------------------GASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVDE 876 (1022)
T ss_dssp -EECCCSBEE----EEC--------------------C--------------CHHHHHHHH-HHHHHHHCCTTCEEEEEC
T ss_pred -CCCHHHHHH----HHc--------------------CCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEEC
Confidence 456655542 011 11110000 12346777664 999999999999999999
Q ss_pred CCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEE--EEcC
Q 046196 1017 PTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI--YVGP 1075 (1436)
Q Consensus 1017 PTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~--y~G~ 1075 (1436)
||+|+|+.. ...++..|+.++++ |+++|++||+++ .+...+|++.++. |++. +.|+
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~ 936 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENE 936 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC----
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecC
Confidence 999999987 46678899998876 999999999965 3555689988875 6766 4454
No 163
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.56 E-value=3.7e-15 Score=194.56 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=69.9
Q ss_pred ccCChhhhhHHHHHHHH--hcCCceeEEeCCCCCCChHHHHHH-HHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 324 RGISGGQRKRLTTGEML--VGPARALFMDEISTGLDSSTTYQI-VNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al--~~~~~illLDEptsgLD~~t~~~i-~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ ...++.+.+.. +.+++.++|. .+..+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~-g~~vl~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKI-GAFCMFATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTT-CCEEEEEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEcCc-HHHHHHhccccee
Confidence 46899999998888888 899999999999999999998888 45556554323 4455556777 5677899999999
Q ss_pred cCCeEEEecChhHH
Q 046196 401 SDGQIVYQGPRENV 414 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~ 414 (1436)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999998877654
No 164
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.55 E-value=3.6e-16 Score=173.97 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=94.8
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCc-----eeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHH
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-----VSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLV 946 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~-----~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~ 946 (1436)
+.+++|++++|+||||||||||+++|+|.....+ ..|.+++++..... .+.++++.|...+.+. |+.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5899999999999999999999999998433211 24567777653210 1112233333222221 2222221
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH-HHHHHHHHHHHhh-------CCCcceeeCCC
Q 046196 947 YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 1018 (1436)
Q Consensus 947 ~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG-qrqRl~iA~aL~~-------~p~illlDEPT 1018 (1436)
+. ...+.+ +++++..+.+++. +|+++++||||
T Consensus 96 ----------------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 ----------------------------VA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp ----------------------------EE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred ----------------------------EE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 112333 3344566666665 89999999999
Q ss_pred CCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCCH---HHHHhhCeEEEEecC
Q 046196 1019 SGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1019 sgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~D~v~~l~~G 1067 (1436)
+++|+.. ...+++.|+++++ .|+|||+++|..+. .+...+|+++.|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 9999841 2367777777764 49999999995431 256678999999874
No 165
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.53 E-value=7.2e-15 Score=183.84 Aligned_cols=159 Identities=12% Similarity=0.083 Sum_probs=111.9
Q ss_pred eecc-eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHH
Q 046196 170 LHDV-SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248 (1436)
Q Consensus 170 L~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 248 (1436)
|+.+ ++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .++.++
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~ 327 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRN 327 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHH
Confidence 3443 6799999999999999999999999999987653 32 12344555431 022222
Q ss_pred HHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 046196 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328 (1436)
Q Consensus 249 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 328 (1436)
.. + .+ .+. +. +...|+....+. .+..|||
T Consensus 328 ~~---~-~g-----------------------~~~------------------~~-~~~~g~~~~~~~-----~p~~LS~ 356 (525)
T 1tf7_A 328 AY---S-WG-----------------------MDF------------------EE-MERQNLLKIVCA-----YPESAGL 356 (525)
T ss_dssp HH---T-TS-----------------------CCH------------------HH-HHHTTSEEECCC-----CGGGSCH
T ss_pred HH---H-cC-----------------------CCH------------------HH-HHhCCCEEEEEe-----ccccCCH
Confidence 10 0 00 000 00 123445444332 3456999
Q ss_pred hhhhHHHHHHHHhcCCceeEEeCCCCCCChH-----HHHHHHHHHHHHHHhcCCeEEEEEecCc----------hhHHHh
Q 046196 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSS-----TTYQIVNSLRQSIHILNGTAVISLLQPA----------PETYEL 393 (1436)
Q Consensus 329 GqkqRvsia~al~~~~~illLDEptsgLD~~-----t~~~i~~~l~~~~~~~~~t~ii~i~q~~----------~~~~~~ 393 (1436)
||+||+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.. . +.+++.++|.. ..+..+
T Consensus 357 g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~-g~tvilvsh~~~~~~~~~~~~~~l~~~ 433 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-E-EITGLFTNTSDQFMGAHSITDSHISTI 433 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-T-TCEEEEEEECSSSSCCCSSCSSCCTTT
T ss_pred HHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-C-CCEEEEEECcccccCcccccCccccee
Confidence 9999999999999999999999 99999999 88999998887754 3 44555566665 667789
Q ss_pred cccEEEecCCe
Q 046196 394 FDDLILLSDGQ 404 (1436)
Q Consensus 394 ~D~iivL~~G~ 404 (1436)
+|+|++|++|+
T Consensus 434 ~D~vi~L~~ge 444 (525)
T 1tf7_A 434 TDTIILLQYVE 444 (525)
T ss_dssp CSEEEEEEEEE
T ss_pred eeEEEEEEEEE
Confidence 99999999886
No 166
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.51 E-value=8.1e-15 Score=190.79 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=98.2
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHH
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
++.+++|||+.+++|++++|+|||||||||||+++++.... ... |...... ...++. .+.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq~------g~~vpa~--~~~i~~---~d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-AQI------GSYVPAE--EATIGI---VDGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HHH------TCCBSSS--EEEEEC---CSEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-hhc------Cccccch--hhhhhH---HHHHHHhCChH
Confidence 35699999999999999999999999999999999753210 000 1111000 001111 11122222211
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD 1022 (1436)
+++ .. +.+.+|+|++|++.|+++ +.+|++++|||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 00 124689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCCHHHHHhhCeE
Q 046196 1023 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 1023 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
+.....+. .+++.+++ .|+|||++||+++ +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99988887 67777765 5999999999964 44555543
No 167
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.51 E-value=3.5e-15 Score=165.95 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=92.6
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC----CcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHH
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL----KFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~----~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
+-+++|++++|+||||||||||+++|+|.+.+.. .-.|.|.+++.+.. ..+.++++.|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654420 01346666664310 01223344443332222 4444433
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
+.. ..++++
T Consensus 96 ~~~-----------------------------------------------------------------------~~~~~~ 104 (231)
T 4a74_A 96 VAR-----------------------------------------------------------------------AFNSNH 104 (231)
T ss_dssp EEE-----------------------------------------------------------------------CCSHHH
T ss_pred EEe-----------------------------------------------------------------------cCChHH
Confidence 321 122222
Q ss_pred -hhHHHHHHHHh-------cCCceeEEeCCCCCCChHH------------HHHHHHHHHHHHHhcCCeEEEEEecCchh-
Q 046196 331 -RKRLTTGEMLV-------GPARALFMDEISTGLDSST------------TYQIVNSLRQSIHILNGTAVISLLQPAPE- 389 (1436)
Q Consensus 331 -kqRvsia~al~-------~~~~illLDEptsgLD~~t------------~~~i~~~l~~~~~~~~~t~ii~i~q~~~~- 389 (1436)
++++..++.++ .+|+++++||||+++|+.. ..++++.|+++++.. +.+|+.++|...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~-g~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY-DIAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHC-CCeEEEEeecccCc
Confidence 22233333333 4899999999999999842 236778888776644 4556667884444
Q ss_pred ---HHHhcccEEEecCC
Q 046196 390 ---TYELFDDLILLSDG 403 (1436)
Q Consensus 390 ---~~~~~D~iivL~~G 403 (1436)
+...+|+++.|++|
T Consensus 184 g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 184 GHILAHSATLRVYLRKG 200 (231)
T ss_dssp ------CCSEEEEEEEC
T ss_pred chhhHhhceEEEEEEec
Confidence 88889999999875
No 168
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.50 E-value=3.9e-15 Score=168.77 Aligned_cols=133 Identities=16% Similarity=0.240 Sum_probs=94.6
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
++|+|+| +++|++++|+||||||||||+++|+|.++|+ .+|+|.++|.++. |++|+...
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~---------~~~~~~~~-------- 73 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE---------YVFKHKKS-------- 73 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC---------SCCCCSSS--------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce---------eecCCcce--------
Confidence 3899999 9999999999999999999999999998763 1699999987642 33332110
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
+. .+ +.+|++. ..+
T Consensus 74 ---~v--~q-------------------------------------------------~~~gl~~-----------~~l- 87 (261)
T 2eyu_A 74 ---IV--NQ-------------------------------------------------REVGEDT-----------KSF- 87 (261)
T ss_dssp ---EE--EE-------------------------------------------------EEBTTTB-----------SCH-
T ss_pred ---ee--eH-------------------------------------------------HHhCCCH-----------HHH-
Confidence 00 00 0012210 112
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
|++||++|..+|+++++|||| |..+...+++ . +. . +.+|++++|... ....+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~-g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-T-GHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-T-TCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-c-CCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9888665443 2 22 2 445565667654 7789999988864
No 169
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.50 E-value=7.4e-17 Score=177.40 Aligned_cols=145 Identities=17% Similarity=0.141 Sum_probs=110.9
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCC--CCCcHHHHHHHHHHh
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS--PHVTVYESLVYSAWL 951 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~lTv~e~l~~~~~l 951 (1436)
.++|+++||+||||||||||+++|+|... + .++|++|++.++ +.+|+.++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~--~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG--E-------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG--G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC--C-------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 47899999999999999999999998753 1 368999988776 5689988865421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH----HHHHHHHHHHhhCCCcceeeCCCCC-------
Q 046196 952 RLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1020 (1436)
Q Consensus 952 ~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGq----rqRl~iA~aL~~~p~illlDEPTsg------- 1020 (1436)
..+. ....+.+.+.++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~----~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPD----AFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGG----GBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChh----hhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111 11123456777777776554432 34688886 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 046196 1021 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1050 (1436)
Q Consensus 1021 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1050 (1436)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45689999999973
No 170
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.50 E-value=1.8e-16 Score=183.93 Aligned_cols=157 Identities=17% Similarity=0.093 Sum_probs=85.3
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCC-CCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCc
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 940 (1436)
+++.+++++++.| +|+|+||||||||++.|+|. .. +.+| |.++|.+.......+.+++++|.+.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 4567999999998 99999999999999999996 44 4578 8888876543222345789999888888899
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC-
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS- 1019 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTs- 1019 (1436)
+.|+.-+...... .+.....++.+.+ ..+.. .+++|||||||+.+||+++ ++++||||+
T Consensus 80 v~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAINC-----RDCFKTIISYIDE------QFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHHH------HHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 9998876532210 0000111122211 12232 2469999999999988875 999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCC
Q 046196 1020 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1051 (1436)
Q Consensus 1020 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1051 (1436)
|||+... +.++++.+. +.++|++.||..
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 4999873 556666543 778899999854
No 171
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.50 E-value=2.4e-16 Score=169.90 Aligned_cols=163 Identities=22% Similarity=0.241 Sum_probs=107.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-ccceEEEecCCCCcCCCCCHHHHHHhhhhhcCC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-PQRTSAYISQNDLHIGEMTVRETLAFSARCQGV 258 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~ 258 (1436)
|++++|+||||||||||+++|+|.++ + +| |.++|.+..+.. ..+.++|++|+.. . + ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g--~-~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--G--T-RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEETT--S--C-EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEecc--c--c-eehh---hcccc-
Confidence 78999999999999999999999987 6 79 999887764432 2467899998641 1 1 1111 00000
Q ss_pred CCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc-cccccccCcccccCChhhhhHHH-H
Q 046196 259 GPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV-CADTMVGDEMLRGISGGQRKRLT-T 336 (1436)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvs-i 336 (1436)
+.++ ..+..+|.. ...+|||||+++. +
T Consensus 67 --------------------------------------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 67 --------------------------------------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVL 95 (189)
T ss_dssp --------------------------------------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTT
T ss_pred --------------------------------------------------cCCccccccccceE-EEcchHHHHHHHHHH
Confidence 0000 012244433 3359999999984 4
Q ss_pred HH---HHhcCCceeEEeC--CCCCCChHHHHHHHHHHHHHHHhcCCeEEE---EEecCchhHHHhcccEEEecCCeEEEe
Q 046196 337 GE---MLVGPARALFMDE--ISTGLDSSTTYQIVNSLRQSIHILNGTAVI---SLLQPAPETYELFDDLILLSDGQIVYQ 408 (1436)
Q Consensus 337 a~---al~~~~~illLDE--ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii---~i~q~~~~~~~~~D~iivL~~G~iv~~ 408 (1436)
++ |+..+|++++||| |+..+|......+.+.+++ ..++|+ .++|+.+ ..+.|+|..+.+|+|+.-
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-----~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST-----PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-----SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-----CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5789999999999 8988998765555555442 334553 3336553 357788888899999874
Q ss_pred c--ChhHH
Q 046196 409 G--PRENV 414 (1436)
Q Consensus 409 G--~~~~~ 414 (1436)
. +++++
T Consensus 169 ~~~nr~~~ 176 (189)
T 2i3b_A 169 TKENRNHL 176 (189)
T ss_dssp CSSSGGGH
T ss_pred ChHhHHHH
Confidence 3 44444
No 172
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.49 E-value=1.2e-15 Score=176.60 Aligned_cols=149 Identities=14% Similarity=0.131 Sum_probs=104.9
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-------cc--cceEEEeecCCCCCCCCcHHHHHH
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-------TF--ARISGYCEQTDIHSPHVTVYESLV 946 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~~~~~lTv~e~l~ 946 (1436)
+|++++|+||||||||||++.|+|... +.+|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 799999999999999999999999876 3579999999875321 11 235899999988888899999997
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHH
Q 046196 947 YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026 (1436)
Q Consensus 947 ~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~ 1026 (1436)
+..... .+ ..+++..|+.+..+.. ++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~----~d--------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG----YD--------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT----CS--------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC----CC--------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 643110 00 0122223333322221 455669999999999999994433 4454444
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCC
Q 046196 1027 AIVMRTVRNTVDT-GRTVVCTIHQPS 1051 (1436)
Q Consensus 1027 ~~i~~~l~~~~~~-g~tvi~~~H~~~ 1051 (1436)
..+++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 5566666766544 899999999743
No 173
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.49 E-value=3.2e-15 Score=197.75 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=111.1
Q ss_pred ceeeecceEEEeC-------CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEE-EecCCCC
Q 046196 167 LTILHDVSGIIKP-------QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSA-YISQNDL 238 (1436)
Q Consensus 167 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~~~ 238 (1436)
..+++|+++.+++ |++++|+|||||||||||++| |.+.+. ..+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------------------aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------------------AQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------------------HTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------------------hheeEEeccCcC
Confidence 4689999999987 999999999999999999999 987431 1344 8998753
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMV 318 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 318 (1436)
.+||.|+|.. + +|+.+..+
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555421 0 01111000
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHH-HHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTT-YQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~-~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
.+...+|+|+++ +++|++++.+|+++|||||++|+|+... ..+++.|+.+.+.. +.+++.++|....+...+|++
T Consensus 847 --~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHhCCcc
Confidence 112346776664 9999999999999999999999999885 44677777775432 455666789888888889999
Q ss_pred EEecCCeEE--EecChhH
Q 046196 398 ILLSDGQIV--YQGPREN 413 (1436)
Q Consensus 398 ivL~~G~iv--~~G~~~~ 413 (1436)
.++ +|++. +.|+.++
T Consensus 923 ~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECED 939 (1022)
T ss_dssp SEE-EEEEEEC-------
T ss_pred eee-cCeEEEEEecCccc
Confidence 887 58887 5566543
No 174
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.49 E-value=3.4e-15 Score=191.83 Aligned_cols=128 Identities=21% Similarity=0.153 Sum_probs=96.0
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
+.+++|+|+. |++++|+|||||||||||++|+|.... +..|.+. + . .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P--A--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S--S--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e--h--hccceeeHHH---hhccCCHHH
Confidence 4699999999 999999999999999999999996420 1234321 1 1 1234677765 445556555
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCcceeeCC---C
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1018 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL--~~~p~illlDEP---T 1018 (1436)
++. .++|+|+++++.+|+++ +.+|++++|||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 431 14799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1019 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1019 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
++||..+. ..+.+.|++ .|+|+|++||+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 99999875 567777766 4899999999953
No 175
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.48 E-value=5.2e-14 Score=145.10 Aligned_cols=83 Identities=23% Similarity=0.305 Sum_probs=69.5
Q ss_pred CcccccCChhhhhHHHHH------HHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHh
Q 046196 320 DEMLRGISGGQRKRLTTG------EMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL 393 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia------~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 393 (1436)
++.+..||||||||++|| ++++.+|++++|||||+|||+.+...+.+.++++.. . +.+|+.++|+. +..+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-K-IPQVILVSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-G-SSEEEEEESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-c-CCEEEEEEChH-HHHHh
Confidence 445667999999999876 899999999999999999999999999999998754 2 44566677876 67889
Q ss_pred cccEEEe--cCCeE
Q 046196 394 FDDLILL--SDGQI 405 (1436)
Q Consensus 394 ~D~iivL--~~G~i 405 (1436)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 46643
No 176
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.47 E-value=1.1e-15 Score=168.11 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=101.2
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcC--CCCCHHHHHHhhhh
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHI--GEMTVRETLAFSAR 254 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~--~~lTV~E~l~f~~~ 254 (1436)
.++|++++|+||||||||||+++|+|.+.| .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998743 378999988765 56899988765321
Q ss_pred hcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh----
Q 046196 255 CQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ---- 330 (1436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 330 (1436)
..+ .. ........++.+++.+..+.. ...+|+||
T Consensus 61 ~~~---------~~----------------------------~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HPD---------AF----------------------------DLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SGG---------GB----------------------------CHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Chh---------hh----------------------------hHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 000 00 011223345666666544433 34589996
Q ss_pred hhHHHHHHHHhcCCceeEEeCCCCC-------CChHHHHHHHHHHHHHHHhcCCeEE
Q 046196 331 RKRLTTGEMLVGPARALFMDEISTG-------LDSSTTYQIVNSLRQSIHILNGTAV 380 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEptsg-------LD~~t~~~i~~~l~~~~~~~~~t~i 380 (1436)
+||+++|++++.+|+++++||||++ ||+.+..++.+.+++.....+.+++
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~ 155 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLE 155 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHH
Confidence 4789999999999999999999999 9999999999988875433344443
No 177
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.47 E-value=4.3e-15 Score=175.74 Aligned_cols=170 Identities=19% Similarity=0.176 Sum_probs=101.4
Q ss_pred eeeecc-eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCC-CcceE-EEECCccCCCccccceEEEecCCCCcCCC
Q 046196 168 TILHDV-SGIIKPQRLTLLLGPPSSGKTTLLLALAGKL--GKDL-KFSGR-VTYNGHGMEEFVPQRTSAYISQNDLHIGE 242 (1436)
Q Consensus 168 ~iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~-~~~G~-V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~ 242 (1436)
..|+++ ++.+++|++++|+||||||||||++.|++.. +|+. ...|+ |.+++.+.. ..+.+++++|...+.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 356665 6899999999999999999999999999987 4430 11367 788886531 12345666666543333
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
++.||+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 555555443110
Q ss_pred cccCChhhhhHHHHHHHHh-------cCCceeEEeCCCCCCChHH------------HHHHHHHHHHHHHhcCCeEEEEE
Q 046196 323 LRGISGGQRKRLTTGEMLV-------GPARALFMDEISTGLDSST------------TYQIVNSLRQSIHILNGTAVISL 383 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~-------~~~~illLDEptsgLD~~t------------~~~i~~~l~~~~~~~~~t~ii~i 383 (1436)
-|++|+|++.++++++ .+|+++++||||+++|+.. ..++++.|+++++.. +++|+.+
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~-~~tvii~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY-DIAVFVT 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHc-CcEEEEE
Confidence 0223333333333333 7899999999999999852 356666777776543 4556657
Q ss_pred ecCchhHHHhcccEEEecCCeEEEecChh
Q 046196 384 LQPAPETYELFDDLILLSDGQIVYQGPRE 412 (1436)
Q Consensus 384 ~q~~~~~~~~~D~iivL~~G~iv~~G~~~ 412 (1436)
+|...+....+++......|+++.++...
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~~~ 311 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSATL 311 (349)
T ss_dssp EECC---------------CCCCCTTCSE
T ss_pred cccccccccccCCccccCCcceEeecCcE
Confidence 77766555556667777788877666543
No 178
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.47 E-value=4e-15 Score=167.70 Aligned_cols=169 Identities=13% Similarity=0.069 Sum_probs=94.8
Q ss_pred eeecc-eEEEeCCeEEEEEcCCCCCHHHHHHHHh--cCcCCCCCcceEEEECCccCCCccc--cceEEEecCCCCcCCCC
Q 046196 169 ILHDV-SGIIKPQRLTLLLGPPSSGKTTLLLALA--GKLGKDLKFSGRVTYNGHGMEEFVP--QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 169 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~--G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~~~~~~~l 243 (1436)
.|+++ .+-|++|++++|+||||||||||+++|+ |...+. +|.+.+++....+... .+.++|.+|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 35554 3589999999999999999999999999 653444 5667776643211100 01233433332222222
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
++.++........ ... ... ..
T Consensus 95 ~~~~~~~~~~~~~-----------------------------------------------------~~~-~~~-----~~ 115 (251)
T 2ehv_A 95 AIVDGVSSVVGLP-----------------------------------------------------SEE-KFV-----LE 115 (251)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEEccccccccc-----------------------------------------------------ccc-cee-----cc
Confidence 2222111100000 000 000 00
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCC-----hHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH--------
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLD-----SSTTYQIVNSLRQSIHILNGTAVISLLQPAPET-------- 390 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD-----~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~-------- 390 (1436)
...+-++..+...+..-..+|+++++||||++|| ...+..+.+.++.+.. . +.+|+.++|...+.
T Consensus 116 ~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~-g~tii~vtH~~~~~~~~~~~~~ 193 (251)
T 2ehv_A 116 DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-M-GVTTILTTEAPDPQHGKLSRYG 193 (251)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-H-CCEEEEEECCC----CCSSSSS
T ss_pred CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-C-CCeEEEEECCCCCCcccccccC
Confidence 1123344444444444467999999999999997 5666668888877654 3 45556678887777
Q ss_pred -HHhc-ccEEEec
Q 046196 391 -YELF-DDLILLS 401 (1436)
Q Consensus 391 -~~~~-D~iivL~ 401 (1436)
..++ |+|++|+
T Consensus 194 i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 194 IEEFIARGVIVLD 206 (251)
T ss_dssp CGGGGCSEEEEEE
T ss_pred hhhEeeeEEEEEe
Confidence 5788 9999995
No 179
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.47 E-value=2.1e-15 Score=178.33 Aligned_cols=161 Identities=19% Similarity=0.118 Sum_probs=98.7
Q ss_pred ccccc-eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCcee----EE-EEECCccCCcccccceEEEeecCCCCCCCC
Q 046196 866 FLKGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVS----GS-ITISGYPKNQETFARISGYCEQTDIHSPHV 939 (1436)
Q Consensus 866 iL~~v-s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~----G~-i~i~g~~~~~~~~~~~~gyv~q~~~~~~~l 939 (1436)
.|+++ ++.+++|++++|+||||||||||++.|++.....+.+ |. |++++.+.. .++.+++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 45665 5899999999999999999999999999865211223 67 888886531 12234445554333221
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCCcc
Q 046196 940 TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV-------ANPSII 1012 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~-------~~p~il 1012 (1436)
++.||+.+. +. .-|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 333322110 00 01567788888888887 689999
Q ss_pred eeeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 1013 FMDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 1013 llDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
++||||+++|+.. ...+++.|+++++ .|+|||+|+|... ..-..++...... ||+.+
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l 305 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHIL 305 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCC
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceE
Confidence 9999999999862 3566666777665 4899999999864 3322344444444 34443
No 180
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.46 E-value=2e-14 Score=159.84 Aligned_cols=167 Identities=13% Similarity=0.157 Sum_probs=107.8
Q ss_pred ccccccceE-EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccc---eEEEeecCCCCCCCC
Q 046196 864 LEFLKGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFAR---ISGYCEQTDIHSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~-~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~q~~~~~~~l 939 (1436)
...|+++.+ .+++|++++|+||||||||||++.|++... +..|.+.+.+.+.......+ ..++.+|..... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 346888885 899999999999999999999999997643 23455555443322111100 011111110000 00
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--cceeeCC
Q 046196 940 TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEP 1017 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~--illlDEP 1017 (1436)
.+ ++.....++ ... .....|.++.++...+.....+|+ ++++|||
T Consensus 86 ~~------------------------~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 86 II------------------------IDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EE------------------------EECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EE------------------------EeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 00 000000000 000 012359999998888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCC-------HHHHHhhCeEEEEec
Q 046196 1018 TSGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFDAFDELLLMKR 1066 (1436)
Q Consensus 1018 TsgL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~D~v~~l~~ 1066 (1436)
|+++ |+.....+++.|+++++ .|+|||+++|+.. ..+...+|++++|.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 9888 99999999999999864 5899999999972 236778999999986
No 181
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.45 E-value=2.7e-13 Score=165.59 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=64.2
Q ss_pred ccCChhhhhHHHHHHHHh----cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 324 RGISGGQRKRLTTGEMLV----GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~----~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
..||||||||++||++++ .+|+++|||||+++||+.....+.+.|+++.. .++++++++|+ .+....+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 359999999999999999 68999999999999999999999999988642 24555556776 577889999999
Q ss_pred ec
Q 046196 400 LS 401 (1436)
Q Consensus 400 L~ 401 (1436)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 182
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.45 E-value=8.4e-14 Score=181.28 Aligned_cols=81 Identities=10% Similarity=0.089 Sum_probs=60.2
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHH-HHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE-ec
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIV-NSLRQSIHILNGTAVISLLQPAPETYELFDDLIL-LS 401 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~-~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv-L~ 401 (1436)
..+|+|++|++.++++ +.+|+++|||||++|||+.....+. ..++.+.+.. +.+++.++|+. +..+++|+.-- +.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~-g~tvl~vTH~~-el~~l~~~~~~~v~ 810 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDV-KSLTLFVTHYP-PVCELEKNYSHQVG 810 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT-CCEEEEECSCG-GGGGHHHHTTTTEE
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc-CCeEEEEeCcH-HHHHHHhhcccceE
Confidence 4689999999999998 8999999999999999999998887 5666654433 45555567774 55577776431 34
Q ss_pred CCeEEE
Q 046196 402 DGQIVY 407 (1436)
Q Consensus 402 ~G~iv~ 407 (1436)
++++.+
T Consensus 811 n~~~~~ 816 (918)
T 3thx_B 811 NYHMGF 816 (918)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 455544
No 183
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.44 E-value=1.9e-14 Score=186.06 Aligned_cols=154 Identities=12% Similarity=0.015 Sum_probs=102.8
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
+.+++|+++. ++|++++|+|||||||||||++|+|.... +. .|..+... ...++++.| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~----~q---~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM----AY---IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH----HT---TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH----Hh---cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 99999999999999999999999985321 00 12111111 123455544 344455555
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
++... .+.+|+|+++ +..+..++.+|++++|||||+|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 44210 1236766664 4445556899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 1024 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 1024 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
.....+ +..++.+.+ .|+++|++||+++ ....+|++..+.+ |++.+.
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~ 750 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDAL 750 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEE
Confidence 777665 778888877 4999999999965 4567887666654 455444
No 184
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.44 E-value=1.7e-14 Score=185.25 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=99.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-CCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG-KDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. . .....+++++| ++..+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------p--a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------P--AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------S--SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------e--hhccceeeHHH---hhccCCH
Confidence 4689999999 99999999999999999999999863 33 45431 0 01234667666 3445555
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
.||+. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55442 24
Q ss_pred CChhhhhHHHHHHHH--hcCCceeEEeCC---CCCCChHHH-HHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 326 ISGGQRKRLTTGEML--VGPARALFMDEI---STGLDSSTT-YQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 326 LSGGqkqRvsia~al--~~~~~illLDEp---tsgLD~~t~-~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+.+.|++ .+.+ ++.++|.. +..+++ .--
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~-vl~~TH~~-~l~~~~--~~~ 707 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAY-TLFATHYF-ELTALG--LPR 707 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCE-EEEECCCH-HHHTCC--CTT
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCE-EEEEeCCH-HHHHhh--hhc
Confidence 899999999999999 999999999999 999998875 568888775 2344 44467765 344444 112
Q ss_pred ecCCeEEEe
Q 046196 400 LSDGQIVYQ 408 (1436)
Q Consensus 400 L~~G~iv~~ 408 (1436)
+.++++...
T Consensus 708 v~n~~~~~~ 716 (765)
T 1ewq_A 708 LKNLHVAAR 716 (765)
T ss_dssp EEEEEEEEE
T ss_pred ceEEEEEEE
Confidence 334554443
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.43 E-value=5.6e-15 Score=171.37 Aligned_cols=156 Identities=12% Similarity=0.110 Sum_probs=79.5
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC-cCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK-LGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~-~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 244 (1436)
++.+++|+++.| +|+||||+|||||++.|.|. +.++ +| |.++|.++......+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 6666 78 8888876643222345789999887788899
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|.||..++..... ..++ ....+++.+. .+ ...+
T Consensus 80 v~Dt~g~~~~~~~-~e~~-----------------------------------~~l~~~l~~~------~~-----~~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-RDCF-----------------------------------KTIISYIDEQ------FE-----RYLH 112 (301)
T ss_dssp EEEEC------------C-----------------------------------TTHHHHHHHH------HH-----HHHH
T ss_pred hhhhhhhhhhcCc-HHHH-----------------------------------HHHHHHHHHH------HH-----HHHH
Confidence 9999877532100 0000 0001111111 11 2345
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCC-CChHHHHHHHHHHHHHHHhcCCeEEEEEecCc
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTG-LDSSTTYQIVNSLRQSIHILNGTAVISLLQPA 387 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsg-LD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 387 (1436)
++|||||||+.+||+++ ++++||||++ ||+... +.++++.. ..+.++|...|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 69999999999988875 9999999985 999873 44555432 2244555455554
No 186
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.43 E-value=1.4e-13 Score=158.09 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=102.8
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhc
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLR 952 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~ 952 (1436)
.+++|++++|+||||||||||++.+++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 589999999999999999999999997433 3444 23443211 2346777655422 11111211 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC--CCCHHHH---H
Q 046196 953 LPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 1027 (1436)
Q Consensus 953 ~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTs--gLD~~~~---~ 1027 (1436)
..... ...+++++.+++.+..+.. +..||+||++++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 11121 2246677888877665443 457999998865 68889999999999999 9998544 7
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCC
Q 046196 1028 IVMRTVRNTV-DTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1028 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1051 (1436)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888888886 45999999999864
No 187
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.43 E-value=4.5e-15 Score=188.02 Aligned_cols=165 Identities=17% Similarity=0.152 Sum_probs=109.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCC-CCCcceEEEECCccCCC------ccccceEEEecCCCCcCCCCCHHHHHHhhhhh
Q 046196 183 TLLLGPPSSGKTTLLLALAGKLGK-DLKFSGRVTYNGHGMEE------FVPQRTSAYISQNDLHIGEMTVRETLAFSARC 255 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~~~-~~~~~G~V~~~G~~~~~------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~ 255 (1436)
++|+|||||||||||++|+|...| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 5 8999999987521 12346789999999999999999999876432
Q ss_pred cCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHH
Q 046196 256 QGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLT 335 (1436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs 335 (1436)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 11000 0011 11222
Q ss_pred HHHHHhcCCceeEEeCC------CCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCch----hHHHhc--------ccE
Q 046196 336 TGEMLVGPARALFMDEI------STGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP----ETYELF--------DDL 397 (1436)
Q Consensus 336 ia~al~~~~~illLDEp------tsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~----~~~~~~--------D~i 397 (1436)
++.+....|+++++||| |+|||+....++.+.++++.....+.+++.++|+.+ ++..++ ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22222357999999999 999999999999999998755444556666676654 222332 237
Q ss_pred EEecCCeEEEecChhHHHH
Q 046196 398 ILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~~ 416 (1436)
+|+.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8888888888887665544
No 188
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.43 E-value=2.2e-14 Score=169.32 Aligned_cols=132 Identities=20% Similarity=0.267 Sum_probs=90.4
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCce-eEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV-SGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
+|+++ ...+|++++|+|||||||||||++|+|... +. .|.|...+.+... ......+++.|......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~------- 181 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIEDPIEF-VHESKKCLVNQREVHRD------- 181 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTT-------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEccCcHHh-hhhccccceeeeeeccc-------
Confidence 55555 678999999999999999999999999765 23 4566544433321 11112233433321111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
.++..+ +||++|..+|++|++|||| |..
T Consensus 182 ---------------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e 209 (356)
T 3jvv_A 182 ---------------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLE 209 (356)
T ss_dssp ---------------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHH
T ss_pred ---------------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHH
Confidence 122222 9999999999999999999 666
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 1025 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1025 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+... +.+++.+|.||++|+|+.+. ...+||++.|..|
T Consensus 210 ~~~~----~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~~ 246 (356)
T 3jvv_A 210 TIRL----ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFPA 246 (356)
T ss_dssp HHHH----HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSCH
T ss_pred HHHH----HHHHHhcCCEEEEEEccChH--HHHHHHHhhhcCc
Confidence 6444 34446679999999999873 3789999998653
No 189
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.43 E-value=2.1e-14 Score=166.07 Aligned_cols=148 Identities=12% Similarity=0.080 Sum_probs=102.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---------cceEEEecCCCCcCCCCCHHHHH
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---------QRTSAYISQNDLHIGEMTVRETL 249 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~~~~~~~lTV~E~l 249 (1436)
+|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++..... ++.++|++|+....+.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999987 8999999988753221 23589999998888889999999
Q ss_pred HhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh
Q 046196 250 AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGG 329 (1436)
Q Consensus 250 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 329 (1436)
.++... +. + . .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~~-~~----d-----------~---------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKAR-GY----D-----------L---------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHHH-TC----S-----------E---------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHhC-CC----C-----------E---------------------------EEecCCCCCCchH--------HHHHHH
Confidence 865211 00 0 0 0111223322111 124555
Q ss_pred hhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 046196 330 QRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP 386 (1436)
Q Consensus 330 qkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 386 (1436)
+|||++|||++..+|+.++| .||+.+..++++.++++.+..+.+.|+ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 68999999999999995554 566665566666676665444444444 6664
No 190
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.40 E-value=2.4e-15 Score=162.00 Aligned_cols=160 Identities=21% Similarity=0.191 Sum_probs=102.1
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP 955 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~ 955 (1436)
|++++|+||||||||||+++|+|..+ .+| |.++|.+..+ ...++.+||++|+. .... +++ +.+....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccccC
Confidence 78999999999999999999999764 368 8888876643 23467789999974 1111 111 1111100
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCCcceeeC--CCCCCCHHHHHHH
Q 046196 956 EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1029 (1436)
Q Consensus 956 ~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl-~iA~---aL~~~p~illlDE--PTsgLD~~~~~~i 1029 (1436)
+ ....+..+|.. ...+|+|||+++ ++++ |+..+|++|+||| ||..+|......+
T Consensus 69 --~-----------------~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 69 --P-----------------PGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp --C-----------------SSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred --C-----------------ccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 0 00011123322 246899999988 4444 5789999999999 8999998765555
Q ss_pred HHHHHHHHhCCCEEEE----EecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1030 MRTVRNTVDTGRTVVC----TIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1030 ~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
.+.++ ...++|+ ++|+.+ ....|+|..+. +|+++...+.
T Consensus 129 ~~~l~----~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~~ 171 (189)
T 2i3b_A 129 RQTLS----TPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTKE 171 (189)
T ss_dssp HHHHH----CSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCSS
T ss_pred HHHHh----CCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeChH
Confidence 55544 3445553 338864 13456666665 4677765543
No 191
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.39 E-value=8.7e-14 Score=154.69 Aligned_cols=171 Identities=16% Similarity=0.100 Sum_probs=107.3
Q ss_pred ceeeecceE-EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSG-IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+. +|.|.+.+.+. +.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~----------------------~~ 63 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE----------------------SR 63 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS----------------------CH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc----------------------CH
Confidence 446888885 89999999999999999999999999887654 56666644221 11
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
.+........ +... + +.... .... .+.....++ ...+ ...
T Consensus 64 ~~~~~~~~~~-~~~~--~---~~~~~--~~~~-----------------------~~~~~~~~~-----~~~~----~~~ 103 (235)
T 2w0m_A 64 DSIIRQAKQF-NWDF--E---EYIEK--KLII-----------------------IDALMKEKE-----DQWS----LVN 103 (235)
T ss_dssp HHHHHHHHHT-TCCC--G---GGBTT--TEEE-----------------------EECCC---------CTTB----CSS
T ss_pred HHHHHHHHHh-cchH--H---HHhhC--CEEE-----------------------EeccccccC-----ceee----ecC
Confidence 1111000000 0000 0 00000 0000 000000001 0000 123
Q ss_pred CChhhhhHHHHHHHHhcCCc--eeEEeCCCCCC--ChHHHHHHHHHHHHHHHhcCCeEEEEEecCc--------hhHHHh
Q 046196 326 ISGGQRKRLTTGEMLVGPAR--ALFMDEISTGL--DSSTTYQIVNSLRQSIHILNGTAVISLLQPA--------PETYEL 393 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~--illLDEptsgL--D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~--------~~~~~~ 393 (1436)
.|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+++.++|.. +.+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhee
Confidence 58999988888877778999 99999999888 9999999999999987643 56666677877 558889
Q ss_pred cccEEEecCC
Q 046196 394 FDDLILLSDG 403 (1436)
Q Consensus 394 ~D~iivL~~G 403 (1436)
+|+|++|+..
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999764
No 192
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.38 E-value=2.9e-14 Score=156.06 Aligned_cols=179 Identities=13% Similarity=0.130 Sum_probs=93.9
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC---CCceeEEEEECCc
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYVSGSITISGY 915 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~ 915 (1436)
++++|+++.+. ..+|++ +.+++|..++|+|+||||||||++.|+|... ..+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 56777777653 136777 8899999999999999999999999999761 0134455433211
Q ss_pred cC--CcccccceEEEeecCCCCCCCCc---HHHHHHHHHHh-cC----------CCCCCHHHHHHHHHHHHHHcCCcccc
Q 046196 916 PK--NQETFARISGYCEQTDIHSPHVT---VYESLVYSAWL-RL----------PPEVDSDTRKMFVEEVMELVELNPIR 979 (1436)
Q Consensus 916 ~~--~~~~~~~~~gyv~q~~~~~~~lT---v~e~l~~~~~l-~~----------~~~~~~~~~~~~v~~vl~~l~l~~~~ 979 (1436)
-. ....+....|+..+. .+... .+..+...... +. ...... ....+.+.++..++..+
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~- 141 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVL- 141 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEE-
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeE-
Confidence 00 000000111111100 00000 11111111110 00 001111 11223445555555432
Q ss_pred cccccCCCCCCCCHHHHHH-HHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 046196 980 EALVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1042 (1436)
Q Consensus 980 ~~~~g~~~~~~LSgGqrqR-l~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1042 (1436)
.+++. ...+|+||||| +..+++++.+|+++++|||||++|......+++.|.++..+|.|
T Consensus 142 --~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 142 --VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp --EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred --EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 11211 34589999999 89999999999999999999999999999999999988766544
No 193
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.35 E-value=6.9e-14 Score=177.16 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=92.9
Q ss_pred EEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC------cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN------QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~ 953 (1436)
+||+|||||||||||++|+|...+ ..+|.|+++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998653 25899999998741 12456789999999999999999999976532210
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC------CCCCCHHHHH
Q 046196 954 PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1027 (1436)
Q Consensus 954 ~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP------TsgLD~~~~~ 1027 (1436)
... .++| ++++.++.+...+|+++++||| |+|||+....
T Consensus 127 ~~~--------------------------------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 GEG--------------------------------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp CSS--------------------------------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred CCc--------------------------------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 0011 0111222222458999999999 9999999999
Q ss_pred HHHHHHHHHHhC--CCEEEEEecCCC
Q 046196 1028 IVMRTVRNTVDT--GRTVVCTIHQPS 1051 (1436)
Q Consensus 1028 ~i~~~l~~~~~~--g~tvi~~~H~~~ 1051 (1436)
.+.++++++..+ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 668888999866
No 194
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.35 E-value=3.1e-13 Score=174.75 Aligned_cols=156 Identities=12% Similarity=0.051 Sum_probs=100.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
..+++|+|+. ++|++++|+|||||||||||++|+|..... ..| ..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 4589999999 999999999999999999999999974211 012 11111 0123455544 34455555
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
|++..+ ...+
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 554321 1135
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHH-HHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQI-VNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i-~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|+|+++ ++.+...+.+|+++|||||++|+|+.....+ ...++.+.+.. +.+++.++|+. +...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~-g~~vl~~TH~~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI-KALTLFATHYF-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTT-CCEEEEECSCG-GGGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhcc-CCeEEEEeCCH-HHHHHhhhhhceEEEEE
Confidence 666654 4444456899999999999999999877775 56666665422 44555567776 45578999877888888
Q ss_pred EEec
Q 046196 406 VYQG 409 (1436)
Q Consensus 406 v~~G 409 (1436)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=6.9e-14 Score=168.16 Aligned_cols=164 Identities=12% Similarity=0.120 Sum_probs=94.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.+.++|+++.+ +++.+++|+||.| +|+|+||||||||+++|+|...+.+..|.+.+++.+
T Consensus 11 ~l~~~~l~~~y-------------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQV-------------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCT-------------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeE-------------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 36777776554 2356899999998 999999999999999999976421112222222211
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
....+.+++++|.+.+.+.+||.|++.+..... .... ...+.+.+ + ..++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~--------~~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------D--------SKFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------H--------HHHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------H--------HHHHHHHHH
Confidence 112345799999888888899999987754221 0000 11122211 1 125667788
Q ss_pred HHHHHHHHhhCCC---cceeeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 998 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 998 Rl~iA~aL~~~p~---illlDEPT-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
|+.|||+++.+|+ +|++|||| +|||+... +.++++.. +.+||+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 9999999999999 89999999 69998874 34455543 788888888643
No 196
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.33 E-value=2.9e-12 Score=147.17 Aligned_cols=153 Identities=14% Similarity=0.164 Sum_probs=97.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhh
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARC 255 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~ 255 (1436)
-+++|++++|+||||||||||++.+++.+. .|++ +.|.+.. ....+.|+..++.. ..+.+.+. ..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---AL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHHH---HH
Confidence 489999999999999999999999998654 3555 3344321 12457787765531 01111110 00
Q ss_pred cCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHH
Q 046196 256 QGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLT 335 (1436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs 335 (1436)
+ ... .....+.+++.+++.+..+. .+..||+||++++
T Consensus 91 -g-------------------~~~-----------------~~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 91 -G-------------------AHL-----------------SAEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp -H-------------------TTS-----------------CHHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred -H-------------------hhc-----------------ChhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 0 000 00112345667777665443 3456999998876
Q ss_pred HHHHHhcCCceeEEeCCCC--CCChHHH---HHHHHHHHHHHHhcCCeEEEEEecCchh
Q 046196 336 TGEMLVGPARALFMDEIST--GLDSSTT---YQIVNSLRQSIHILNGTAVISLLQPAPE 389 (1436)
Q Consensus 336 ia~al~~~~~illLDEpts--gLD~~t~---~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 389 (1436)
++++.+|+++++||||+ ++|.... .++++.|+++++..+ .+|+.++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g-~tvi~i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG-CSIVFLHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC-CEEEEEEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcC-CEEEEEecCCCc
Confidence 57888999999999999 9998554 788888888875444 455556776544
No 197
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.32 E-value=2.9e-12 Score=135.52 Aligned_cols=75 Identities=11% Similarity=0.190 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEE
Q 046196 988 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLL 1063 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~----~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1063 (1436)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|+. .....+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 45799999999999999974 4699999999999999999999999999865 57899999984 46789999986
Q ss_pred Ee
Q 046196 1064 MK 1065 (1436)
Q Consensus 1064 l~ 1065 (1436)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 198
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.31 E-value=5.7e-15 Score=176.41 Aligned_cols=164 Identities=16% Similarity=0.065 Sum_probs=98.1
Q ss_pred eeecceEEEeC--CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcc----eEEEEC----CccCCCcccc--ceEEEecCC
Q 046196 169 ILHDVSGIIKP--QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFS----GRVTYN----GHGMEEFVPQ--RTSAYISQN 236 (1436)
Q Consensus 169 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~----G~V~~~----G~~~~~~~~~--~~~~yv~Q~ 236 (1436)
+.+.|++.|++ |+.++|+||||||||||+++|+|.++++ + |+|.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 45789999999 9999999999999999999999999886 6 776653 2221 00000 112222221
Q ss_pred CCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccc
Q 046196 237 DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADT 316 (1436)
Q Consensus 237 ~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 316 (1436)
.. ....|++|||.|+ ..+..++
T Consensus 233 ~~-~~~~t~~~nl~~~---------------------------------------------------------~~~~~~~ 254 (365)
T 1lw7_A 233 YI-DYAVRHSHKIAFI---------------------------------------------------------DTDFITT 254 (365)
T ss_dssp HH-HHHHHHCSSEEEE---------------------------------------------------------SSCHHHH
T ss_pred HH-HHHHhccCCEEEE---------------------------------------------------------eCCchHH
Confidence 11 0011111111110 0000011
Q ss_pred cccCcccccCChhhhhHHHHHHHHh-cCCceeEEeC---CC------CCCChHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLV-GPARALFMDE---IS------TGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP 386 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~-~~~~illLDE---pt------sgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 386 (1436)
....+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.+ ++.+.++
T Consensus 255 -----~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~-ililde~ 328 (365)
T 1lw7_A 255 -----QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVP-YIEIESP 328 (365)
T ss_dssp -----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCC-CEEEECS
T ss_pred -----HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCC-EEEeCCC
Confidence 11236677788888888775 5899999999 65 5899999999999998865433344 4445665
Q ss_pred chhHHHhcccEEEec
Q 046196 387 APETYELFDDLILLS 401 (1436)
Q Consensus 387 ~~~~~~~~D~iivL~ 401 (1436)
.+..+++|.+.+++
T Consensus 329 -~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 -SYLDRYNQVKAVIE 342 (365)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 35666777665554
No 199
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.31 E-value=5.2e-13 Score=157.61 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=43.6
Q ss_pred HHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 335 TTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 335 sia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+||++|..+|+++++|||+ |..+...+.+ .+. . +.++++++|..... +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~-G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-T-GHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-T-TCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-c-CCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 7666444433 332 2 44566667766655 889999999665
No 200
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.30 E-value=1.6e-12 Score=143.18 Aligned_cols=154 Identities=19% Similarity=0.135 Sum_probs=99.8
Q ss_pred cccccce-EEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 865 EFLKGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 865 ~iL~~vs-~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
..|+++. +.+++|++++|+||||||||||++.|++ .. ..+.++++..+ . .+. +
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~---~~~v~~i~~~~-----------------~----~~~-~ 60 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS---GKKVAYVDTEG-----------------G----FSP-E 60 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH---CSEEEEEESSC-----------------C----CCH-H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc---CCcEEEEECCC-----------------C----CCH-H
Confidence 4677776 4899999999999999999999999998 21 12334443321 1 111 1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH--HHHHHHHHHHHhhC-CCcceeeCCCCC
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSG 1020 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG--qrqRl~iA~aL~~~-p~illlDEPTsg 1020 (1436)
.+.-. ... ...+. +++++.+.+ ...|++ +++++..+++++.+ |+++++||||++
T Consensus 61 ~~~~~--~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 61 RLVQM--AET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHH--HHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHH--HHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11100 000 01111 122222211 123334 46788889999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCCH------------HHHHhhCeEEEEecC
Q 046196 1021 LDARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1021 LD~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~~D~v~~l~~G 1067 (1436)
+|+.. ...+++.|++++++ |+|||+++|.... .+...+|.+++|.+.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99743 24566667887654 8999999997541 356789999999864
No 201
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.28 E-value=3.5e-13 Score=148.65 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=98.2
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCH----HHHHH
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV----RETLA 250 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV----~E~l~ 250 (1436)
-..++|++++|+||||||||||+++|+|.++|+ ..+|.|.+.+.+.... .++.++|++|++..++.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 357899999999999999999999999998762 3589999988765432 23457899997655554444 22222
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
+... +.|-.
T Consensus 89 ~~~~-----------------------------------------------------------------------~yg~~ 97 (219)
T 1s96_A 89 VFGN-----------------------------------------------------------------------YYGTS 97 (219)
T ss_dssp ETTE-----------------------------------------------------------------------EEEEE
T ss_pred HHhc-----------------------------------------------------------------------cCCCC
Confidence 2110 01111
Q ss_pred hhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecC
Q 046196 331 RKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGP 410 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~ 410 (1436)
+++ .+.++..++++||| ||+.++.++.+.+. .+.+|+.++|+..++.+ |+ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 111 23334456999999 99999999988765 35667767777666544 53 7788 678
Q ss_pred hhHHHHHHH
Q 046196 411 RENVLEFFE 419 (1436)
Q Consensus 411 ~~~~~~~f~ 419 (1436)
.+++...+.
T Consensus 155 ~e~i~~rl~ 163 (219)
T 1s96_A 155 EEVIAKRMA 163 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888765443
No 202
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.28 E-value=5.2e-13 Score=159.56 Aligned_cols=170 Identities=15% Similarity=0.149 Sum_probs=110.3
Q ss_pred cccccccceEEEeCCeE--EEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCc
Q 046196 863 RLEFLKGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~--~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 940 (1436)
... |++||+++++|++ +||+||||||||||+++|+|..- .|... ... .....++.++|++|+..+++.+|
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~--~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THT--QPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCC--CccceEeeEEEEeecCccccccc
Confidence 345 9999999999999 99999999999999999999742 22211 110 11122456899999988888999
Q ss_pred HHHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHHHc-CCc----cccccc----cc--CCCCCCCCHHHHHHHHH
Q 046196 941 VYESLVYSAWLRLPPEVDSD--------TRKMFVEEVMELV-ELN----PIREAL----VG--LPGVSGLSTEQRKRLTI 1001 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~--------~~~~~v~~vl~~l-~l~----~~~~~~----~g--~~~~~~LSgGqrqRl~i 1001 (1436)
|.|++.|+.. .+.. ......++.++.. ++. ...|.. +. .+...+|+-.+ +.|
T Consensus 99 v~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---iei 169 (427)
T 2qag_B 99 IVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVT 169 (427)
T ss_dssp EEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHH
T ss_pred hhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHH
Confidence 9999865421 1111 0122334445443 433 111221 11 12224677776 789
Q ss_pred HHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 046196 1002 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1049 (1436)
Q Consensus 1002 A~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1049 (1436)
+++|..+++|+++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999999999986 77779999888764
No 203
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.26 E-value=2.4e-11 Score=128.51 Aligned_cols=90 Identities=20% Similarity=0.303 Sum_probs=69.6
Q ss_pred cccCChhhhhHHHHHHHHh----cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 323 LRGISGGQRKRLTTGEMLV----GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~----~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +++ +++++|+ ..+...+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~-~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLR-DVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSC-HHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEec-HHHHHhCCEEE
Confidence 4579999999999999996 56799999999999999999999999998743 344 4445665 46788999998
Q ss_pred Ee--cCCeE-EEecChhHHHH
Q 046196 399 LL--SDGQI-VYQGPRENVLE 416 (1436)
Q Consensus 399 vL--~~G~i-v~~G~~~~~~~ 416 (1436)
.+ .+|.. +.....++..+
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEETTEEEEEECCHHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHHH
Confidence 66 46644 33445555443
No 204
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.26 E-value=1.8e-15 Score=163.34 Aligned_cols=169 Identities=18% Similarity=0.204 Sum_probs=109.7
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPE 956 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~ 956 (1436)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...++++|.....+..|+++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999862 357899988654211 234667776544455688888876543211000
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC--CHHHHHHHHHHH------HHhhCCCcceeeCCCCCCCHHHHHH
Q 046196 957 VDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 1028 (1436)
Q Consensus 957 ~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L--SgGqrqRl~iA~------aL~~~p~illlDEPTsgLD~~~~~~ 1028 (1436)
. ..+++.+......+. .+.+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000000000000000 1124 778888888888 9999999999994 899988888
Q ss_pred HHHHHHHHHhCCCEEEEEecC-CCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1029 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1029 i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
++.++++.+.+.+||.++|+ ++ ++.+.+|+|+ + .|+++..|+.
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~ 179 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAG 179 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--H-CGGGSCC---
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--h-CCcEEEeecC
Confidence 88888876667899999998 75 5788899998 4 5788888875
No 205
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.25 E-value=1.2e-12 Score=156.03 Aligned_cols=130 Identities=20% Similarity=0.279 Sum_probs=96.8
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCce-eEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV-SGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
+|++++ +++|++++|+||||||||||+++|+|... +. +|.|.+.|.+... ..++.++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee-----------
Confidence 678776 89999999999999999999999999765 34 7999777766532 2344567777741
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
+++. ...+ +.+|+++|..+|++|++|||| |+.
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1111 1124 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 1025 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 1025 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
+... .++. +..|.+|++|+|..+ ..+.+||++.|.
T Consensus 223 ~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 6443 3443 356899999999965 667788887664
No 206
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.25 E-value=1.3e-13 Score=152.16 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=86.5
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcH----HHHHH
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTV----YESLV 946 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv----~e~l~ 946 (1436)
.-..++|++++|+||||||||||+++|+|..++....|.|.+++.+... ..++.++|++|+...++.+++ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 3467899999999999999999999999987532378999999876532 223457899987654443333 22211
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHH
Q 046196 947 YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026 (1436)
Q Consensus 947 ~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~ 1026 (1436)
+.. .. .+.| +++ +.+++..+++++|| ||+.++
T Consensus 89 ~~~-------------------------------~~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VFG-------------------------------NY------YGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ETT-------------------------------EE------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHh-------------------------------cc------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 100 00 0112 111 34455668999999 999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1027 AIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1027 ~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
..+.+.+. ++.||++++|+++
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHHcc----CCEEEEEECCCHH
Confidence 99998876 5899999999865
No 207
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.25 E-value=2.6e-14 Score=154.21 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=107.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcCCC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVG 259 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~ 259 (1436)
|++++|+||||||||||+++|++ +. +|.|.++|.++... ...++++|.......+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 68999999999999999999997 33 68999998765332 234667776544556688888876532110
Q ss_pred CchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC---cccccC--ChhhhhHH
Q 046196 260 PRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD---EMLRGI--SGGQRKRL 334 (1436)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqkqRv 334 (1436)
. . +-....+...+. +..+.+ |+|++||+
T Consensus 71 ----------~--~-----------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 ----------L--A-----------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ----------H--T-----------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ----------h--c-----------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 0 0 000000000000 001224 89999998
Q ss_pred HHHH------HHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecC-chhHHHhcccEEEecCCeEEE
Q 046196 335 TTGE------MLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP-APETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 335 sia~------al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~-~~~~~~~~D~iivL~~G~iv~ 407 (1436)
.++. ++..+++...+|+ +||+..... .+.++.+.. .+.+++..+|. ..++.+.+|+|+ ++|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~--~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI--DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC--CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC--CccEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8888888888884 899988777 777776532 23445545666 778999999998 9999999
Q ss_pred ecChhHH
Q 046196 408 QGPRENV 414 (1436)
Q Consensus 408 ~G~~~~~ 414 (1436)
+|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9988755
No 208
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=1.8e-12 Score=155.95 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=77.0
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCH
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|+.|++...+.+||
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceee
Confidence 356899999998 99999999999999999999765311 2222222111 1112457899999888888999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
.||+.|+..... . .... ...+++ + ..
T Consensus 93 ~Dt~g~~~~~~~-------------~---------~~~~--------------~i~~~i-~-----------------~~ 118 (418)
T 2qag_C 93 VDTPGFGDAVDN-------------S---------NCWQ--------------PVIDYI-D-----------------SK 118 (418)
T ss_dssp EECC---------------------------------CH--------------HHHHHH-H-----------------HH
T ss_pred eechhhhhhccc-------------h---------hhHH--------------HHHHHH-H-----------------HH
Confidence 999887632110 0 0000 001110 0 13
Q ss_pred CChhhhhHHHHHHHHhcCCc---eeEEeCCC-CCCChHH
Q 046196 326 ISGGQRKRLTTGEMLVGPAR---ALFMDEIS-TGLDSST 360 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~---illLDEpt-sgLD~~t 360 (1436)
++++.+||+.|||+++.+|+ ++++|||| .|||+..
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d 157 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD 157 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH
Confidence 66678889999999999999 99999999 6999877
No 209
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.23 E-value=1.6e-12 Score=154.50 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=99.8
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC-cccccceEEEee-cCCCCCCCCcHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN-QETFARISGYCE-QTDIHSPHVTVYE 943 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~-~~~~~~~~gyv~-q~~~~~~~lTv~e 943 (1436)
+++++|+.+++|++++|+||||||||||+++|+|..+ +.+|.|.++|...- ....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 4599999999999999999999999999999999887 46899999985421 122455678887 44321
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
+++++...|-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222356667777777899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 1024 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1024 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
..+.+.++.+.....|++.++|..+ ....+||+..|..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2345566666544568899999965 56788999999875
No 210
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.23 E-value=4.4e-14 Score=152.47 Aligned_cols=153 Identities=13% Similarity=0.008 Sum_probs=93.9
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-cccceEEEeecCCCCCCCCcHHHHHHHHHHh
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-TFARISGYCEQTDIHSPHVTVYESLVYSAWL 951 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l 951 (1436)
.+++|++++|+||||||||||+++|+|.. ..|.|.++|.+.... ...+.++|++|... +..||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 36799999999999999999999999973 368999998764211 11234577777543 457889988765432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHH
Q 046196 952 RLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031 (1436)
Q Consensus 952 ~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~ 1031 (1436)
........ .++.+++..++...... +. .+..+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~~~-----~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYFV-----ILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCEE-----EECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCeE-----EEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 10000000 00111111111111100 10 12359999999999999999999987 68887777777
Q ss_pred HHHHHHhCCCEEEEEe
Q 046196 1032 TVRNTVDTGRTVVCTI 1047 (1436)
Q Consensus 1032 ~l~~~~~~g~tvi~~~ 1047 (1436)
.++.+...+..+|.++
T Consensus 143 ~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVS 158 (191)
T ss_dssp HTTCCGGGGGGEEECT
T ss_pred HHhccCcccccEEECC
Confidence 7665533233344443
No 211
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.22 E-value=2.2e-13 Score=144.14 Aligned_cols=138 Identities=20% Similarity=0.171 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc------cc-ceEE----EecCCCCcCCCCCHHHHH
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV------PQ-RTSA----YISQNDLHIGEMTVRETL 249 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~-~~~~----yv~Q~~~~~~~lTV~E~l 249 (1436)
++++|+|+||||||||+++|+|.+++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999999875333699999998865432 11 2355 788876544 000
Q ss_pred HhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh
Q 046196 250 AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGG 329 (1436)
Q Consensus 250 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 329 (1436)
+ . .+. .+ ..+.+++. .|+ ..||.|++ +||||
T Consensus 77 -------~--~-----~~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S-----EEE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C-----HHH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C-----hhh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 000 00 01122333 134 57999997 59999
Q ss_pred hhhHHHHHHHHhcCCceeE-------EeCCCCC---CChHHHHHHHHHHHHHHH
Q 046196 330 QRKRLTTGEMLVGPARALF-------MDEISTG---LDSSTTYQIVNSLRQSIH 373 (1436)
Q Consensus 330 qkqRvsia~al~~~~~ill-------LDEptsg---LD~~t~~~i~~~l~~~~~ 373 (1436)
||||++|||+++++|++.- =|.|..+ +|......+.+.+.+...
T Consensus 108 q~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp CCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHT
T ss_pred CCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHh
Confidence 9999999999999998742 2444322 334445667777665543
No 212
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.21 E-value=5.5e-12 Score=149.91 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=52.1
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-ccceEEEec-CCC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-PQRTSAYIS-QND 237 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~-Q~~ 237 (1436)
+++++|+.+++|++++|+||||||||||+++|+|+++|+ +|.|+++|..--... .++.++|++ |++
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC---
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcc
Confidence 349999999999999999999999999999999999997 899999985311111 234577887 543
No 213
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.21 E-value=8.6e-13 Score=137.75 Aligned_cols=78 Identities=17% Similarity=0.030 Sum_probs=66.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
..+++++|+++++|++++|+||||||||||+++|+|.+ |+ +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999999 76 899999998874321111 2799997777 89999
Q ss_pred HHHHh
Q 046196 247 ETLAF 251 (1436)
Q Consensus 247 E~l~f 251 (1436)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99964
No 214
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.19 E-value=1.2e-14 Score=170.08 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=99.8
Q ss_pred eEEEEEccCCCChhHHHHhHcCCCCC------CceeEEEEECCccCCcc------------------cccceEEEe---e
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGRKTG------GYVSGSITISGYPKNQE------------------TFARISGYC---E 930 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 930 (1436)
++++|+|+|||||||||+.|.|...+ .+..|+|.+||.++... .+.+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999987521 14579999999775321 123345555 5
Q ss_pred cCCCCCCCCcHHHHHHHHHHhcCCCCC--CHH-HHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 046196 931 QTDIHSPHVTVYESLVYSAWLRLPPEV--DSD-TRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVA 1007 (1436)
Q Consensus 931 q~~~~~~~lTv~e~l~~~~~l~~~~~~--~~~-~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~ 1007 (1436)
|+..+.++.++.|+..++......... ... .+...++.++..+++.+..+... ++|+|||||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 665555677777766432100000000 000 00000111222334444333332 589999999999999999
Q ss_pred CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1008 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1008 ~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99988 999 67888888874 5899999999864
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.19 E-value=3.1e-11 Score=132.94 Aligned_cols=77 Identities=13% Similarity=-0.000 Sum_probs=56.6
Q ss_pred CChhh--hhHHHHHHHHhcC-CceeEEeCCCCCCChHH--------HHHHHHHHHHHHHhcCCeEEEEEecCch------
Q 046196 326 ISGGQ--RKRLTTGEMLVGP-ARALFMDEISTGLDSST--------TYQIVNSLRQSIHILNGTAVISLLQPAP------ 388 (1436)
Q Consensus 326 LSGGq--kqRvsia~al~~~-~~illLDEptsgLD~~t--------~~~i~~~l~~~~~~~~~t~ii~i~q~~~------ 388 (1436)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.+++ .++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi-~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVI-VINQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEE-EEECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEE-EEeeEEEcCCCCc
Confidence 55554 5678888899885 99999999999999743 24566668887765555555 4566543
Q ss_pred -------hHHHhcccEEEecCC
Q 046196 389 -------ETYELFDDLILLSDG 403 (1436)
Q Consensus 389 -------~~~~~~D~iivL~~G 403 (1436)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567889999999754
No 216
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.18 E-value=5.7e-12 Score=135.84 Aligned_cols=140 Identities=17% Similarity=0.105 Sum_probs=87.5
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHHHHHHhhhh
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVRETLAFSAR 254 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E~l~f~~~ 254 (1436)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++..... .+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 44 7999999976533211 234577777643 45789999876532
Q ss_pred hcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHH
Q 046196 255 CQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRL 334 (1436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRv 334 (1436)
...... ... .-+. ++...+++...+ . +..+..+|+|++||+
T Consensus 78 ~~~~~~------------~~~--~~~~----------------------~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYAKEG------------YFV--ILDG----------------------VVRPDWLPAFTA--L-ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HHHHTS------------CEE--EECS----------------------CCCTTTTHHHHT--T-CSCEEEEEEECCHHH
T ss_pred HHhccC------------CeE--EEec----------------------cCcHHHHHHHHh--c-CCCeEEEEecCCHHH
Confidence 110000 000 0000 000011111110 0 111235999999999
Q ss_pred HHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHH
Q 046196 335 TTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLR 369 (1436)
Q Consensus 335 sia~al~~~~~illLDEptsgLD~~t~~~i~~~l~ 369 (1436)
.++|++..+|+++ +|+.....+.+.++
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~ 145 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFA 145 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHh
Confidence 9999999999876 57776666655444
No 217
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.17 E-value=1.3e-13 Score=155.37 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=97.5
Q ss_pred CCeEEEEEccCCCChhHHHHhHc---CCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhc
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLR 952 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~ 952 (1436)
++++++|+||||||||||+++|+ |... +..|+|.++|.+... .....+++++|+..+.+..++.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 9865 567888887755321 12233455667777788889999997643210
Q ss_pred CC-----CCCCHHHHHHHHHHHHHH--cC------------CcccccccccCCCCCCCCHHHHHHHHHHHHH-hhCCCcc
Q 046196 953 LP-----PEVDSDTRKMFVEEVMEL--VE------------LNPIREALVGLPGVSGLSTEQRKRLTIAVEL-VANPSII 1012 (1436)
Q Consensus 953 ~~-----~~~~~~~~~~~v~~vl~~--l~------------l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL-~~~p~il 1012 (1436)
.. ....... ..++.+.+. ++ +..+.+.. +..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 00 0111111 112222211 11 11112222 346888 55 677 9999999
Q ss_pred eee----CCCCCCCHHHHHHHHHHHHHHHhC
Q 046196 1013 FMD----EPTSGLDARAAAIVMRTVRNTVDT 1039 (1436)
Q Consensus 1013 llD----EPTsgLD~~~~~~i~~~l~~~~~~ 1039 (1436)
+|| |||+|||..+...+.+.++++.++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999 999999999999999999987654
No 218
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.16 E-value=1.3e-12 Score=142.96 Aligned_cols=66 Identities=14% Similarity=0.025 Sum_probs=52.2
Q ss_pred HHHHhCCcccccccccCcccccCChhhhhH-HHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHH
Q 046196 304 VLKILGLEVCADTMVGDEMLRGISGGQRKR-LTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIH 373 (1436)
Q Consensus 304 ~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR-vsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~ 373 (1436)
.++..+++.. .++++ ...+|+||||| +..+++++.+|+.+++|||||++|.....++++.|.+...
T Consensus 132 ~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 132 WAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3455666532 12322 23599999999 8999999999999999999999999999999999988754
No 219
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.15 E-value=4.7e-13 Score=150.78 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh---cCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhh-
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALA---GKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSAR- 254 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~- 254 (1436)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... .....+.++.|+...++..|+.|++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 988776 8888887754211 111234556677777888899999976432
Q ss_pred -------hcCCCCchhhhhhhhHHHHHcc-CCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 255 -------CQGVGPRYEVLQELSRREKAAN-IKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 255 -------~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
+.+.....+ ..+.... ..++--+ + + +.. .+..+ .... ++.+..|
T Consensus 102 ~~~~~~il~g~~~~~~------~~~~l~~~~~~~~vi--~-----L---~~~--~~~~l-----~r~~-----~r~~~~l 153 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLG------QAEALDKICEVDLVI--S-----L---NIP--FETLK-----DRLS-----RRWIHPP 153 (246)
T ss_dssp CTTSCEEEESCCCSHH------HHHHHHTTCCCCEEE--E-----E---ECC--HHHHH-----HHHH-----TEEEETT
T ss_pred cCCCeEEEECCCCCHH------HHHHHHhhcCCCEEE--E-----E---ECC--HHHHH-----HHHH-----cCCCcCC
Confidence 111110000 0000000 0000000 0 0 000 00000 0111 2334469
Q ss_pred ChhhhhHHHHHHHH-hcCCceeEEe----CCCCCCChHHHHHHHHHHHHHHH
Q 046196 327 SGGQRKRLTTGEML-VGPARALFMD----EISTGLDSSTTYQIVNSLRQSIH 373 (1436)
Q Consensus 327 SGGqkqRvsia~al-~~~~~illLD----EptsgLD~~t~~~i~~~l~~~~~ 373 (1436)
|| |+ +++ +.+|++++|| |||+|||..+...+.+.++++..
T Consensus 154 Sg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 154 SG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 99 66 677 9999999999 99999999999999999987654
No 220
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.15 E-value=2e-13 Score=162.99 Aligned_cols=163 Identities=12% Similarity=0.084 Sum_probs=98.1
Q ss_pred ccccceEEEeC--CeEEEEEccCCCChhHHHHhHcCCCCCCcee----EEEEEC----CccCC--cccccceEEEeecCC
Q 046196 866 FLKGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYVS----GSITIS----GYPKN--QETFARISGYCEQTD 933 (1436)
Q Consensus 866 iL~~vs~~i~~--Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~----G~i~i~----g~~~~--~~~~~~~~gyv~q~~ 933 (1436)
+.+.|++.|++ |++++|+||||||||||+++|+|... +.+ |+|.++ |.+.. ...+ +.+++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 46789999999 99999999999999999999999876 456 666553 22110 0001 1122222211
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCCcc
Q 046196 934 IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV-ANPSII 1012 (1436)
Q Consensus 934 ~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~-~~p~il 1012 (1436)
..+ ..|+.||+.+ ++ .+..+.. ...+|+|++||..+++++. .+|+++
T Consensus 234 ~~~-~~t~~~nl~~-------------------------~~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDY-AVRHSHKIAF-------------------------ID-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHH-HHHHCSSEEE-------------------------ES-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHH-HHhccCCEEE-------------------------Ee-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 100 0111111110 00 0001111 1135667788888888775 599999
Q ss_pred eeeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 1013 FMDE---PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 1013 llDE---PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
+||| |+ .++|+..+..+.+.|+++.+ .|.+||+++|. + .....+|++.+++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 68999999999999988754 48899999975 3 3444555555443
No 221
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.12 E-value=1.2e-11 Score=147.35 Aligned_cols=131 Identities=18% Similarity=0.280 Sum_probs=92.1
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 248 (1436)
+|++++ +++|++++|+||||||||||+++|+|.++++ -+|+|.+.|.++. ...+..++|++|...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~---------- 191 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREV---------- 191 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEB----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeec----------
Confidence 678876 8999999999999999999999999998763 1699987776543 223344566666310
Q ss_pred HHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 046196 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328 (1436)
Q Consensus 249 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 328 (1436)
|++ ...+
T Consensus 192 ------------------------------------------------------------g~~-----------~~~~-- 198 (372)
T 2ewv_A 192 ------------------------------------------------------------GED-----------TKSF-- 198 (372)
T ss_dssp ------------------------------------------------------------TTT-----------BSCS--
T ss_pred ------------------------------------------------------------CCC-----------HHHH--
Confidence 010 0123
Q ss_pred hhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 329 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
+.+|+++|..+|+++++|||+ |..+... .++. +. . +..+++.+|. .++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~-g~~vi~t~H~-~~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-T-GHLVFGTLHT-NTAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-T-TCEEEECCCC-CSHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-c-CCEEEEEECc-chHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3433 22 2 4455656665 45888899987764
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.12 E-value=3.1e-11 Score=135.05 Aligned_cols=157 Identities=20% Similarity=0.238 Sum_probs=88.1
Q ss_pred cccce-EEEeCCeEEEEEccCCCChhHHHHhHcCC--CCC---CceeEEEEECCccCCcccccceEEEeecCCCCCCCCc
Q 046196 867 LKGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 867 L~~vs-~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 940 (1436)
|+.+- +-+++|++++|+||||||||||++.|++. ..+ +...|.+++++.... .
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~ 71 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------R 71 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------C
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------C
Confidence 44433 67999999999999999999999999983 321 013567777765310 0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH-HHHHHHHh--hCCCcceeeCC
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKR-LTIAVELV--ANPSIIFMDEP 1017 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqR-l~iA~aL~--~~p~illlDEP 1017 (1436)
..+-......+ .... +++++.+.+ ....+..+... +.-+.+++ .+|+++++|||
T Consensus 72 ~~~~~~~~~~~----g~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 72 PERLLAVAERY----GLSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHT----TCCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHc----CCCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 00000000001 0111 112221110 01245554332 33333444 48999999999
Q ss_pred CCCCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCCHH------------------HHHhhCeEEEEec
Q 046196 1018 TSGLDAR-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSID------------------IFDAFDELLLMKR 1066 (1436)
Q Consensus 1018 TsgLD~~-------~-----~~~i~~~l~~~~~~-g~tvi~~~H~~~~~------------------~~~~~D~v~~l~~ 1066 (1436)
|+.+|+. + ...+++.|++++++ |+|||+++|..... +...+|.+++|.+
T Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 129 TALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp SGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred hHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 9999985 3 34556666666544 99999999964311 1126899999986
Q ss_pred C
Q 046196 1067 G 1067 (1436)
Q Consensus 1067 G 1067 (1436)
+
T Consensus 209 ~ 209 (243)
T 1n0w_A 209 G 209 (243)
T ss_dssp C
T ss_pred c
Confidence 4
No 223
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.12 E-value=9.3e-11 Score=140.16 Aligned_cols=78 Identities=26% Similarity=0.361 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCe
Q 046196 988 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDE 1060 (1436)
Q Consensus 988 ~~~LSgGqrqRl------~iA~aL~~~-p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1060 (1436)
+..||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567888999 99999999999999999999999999874 3579999999975 5678999
Q ss_pred EEEEecCc
Q 046196 1061 LLLMKRGG 1068 (1436)
Q Consensus 1061 v~~l~~Gg 1068 (1436)
+++|++.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998544
No 224
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.12 E-value=3.5e-12 Score=133.18 Aligned_cols=79 Identities=22% Similarity=0.119 Sum_probs=65.7
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHH
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
++.+++++|+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++.... . ...+++|+..++ .+||.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~-~-~~~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEY-N-IAGKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEE-E-ETTEEEEEEECT-TCSCT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeec-c-CCCcceeccccc-cCCcH
Confidence 346899999999999999999999999999999999987 3 5899999998864221 1 113789988777 89999
Q ss_pred HHHHH
Q 046196 943 ESLVY 947 (1436)
Q Consensus 943 e~l~~ 947 (1436)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 225
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.12 E-value=2.7e-11 Score=142.16 Aligned_cols=122 Identities=17% Similarity=0.123 Sum_probs=85.1
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEEC-CccCCcccccceEEEeecCCCCCCCCcHHHHH
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITIS-GYPKNQETFARISGYCEQTDIHSPHVTVYESL 945 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l 945 (1436)
+++++.. .+|++++|+||||||||||+|+|+|... .+.+|+|.++ |.+.. ....+.+++++|+..++++.||+|+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQN-EILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSS-CCCCC--------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccc-ccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh
Confidence 4455543 4899999999999999999999999875 1358999887 76543 23356789999998888888998841
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 046196 946 VYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVEL 1005 (1436)
Q Consensus 946 ~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL 1005 (1436)
+ ...+.++..+.+.++++.+++.+..+.. ..++| ||+||++||+++
T Consensus 283 -----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 -----L---WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA 328 (358)
T ss_dssp -----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS
T ss_pred -----h---cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC
Confidence 1 1234455556678889999998877765 35799 999999999864
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.10 E-value=4.1e-12 Score=153.49 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=102.6
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-------c--ccceEEEeecCCCCCC
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-------T--FARISGYCEQTDIHSP 937 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~--~~~~~gyv~q~~~~~~ 937 (1436)
-+++|+.+++|++++|+|+||||||||+++|+|... +..|+|.++|.+.... . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 467899999999999999999999999999999875 4579999987665321 1 2456899999988888
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCC-cceee
Q 046196 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV-ANPS-IIFMD 1015 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~-~~p~-illlD 1015 (1436)
..|+++++.+...-. .+ --+++..|+.+... .+-..-+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~~~----~D--------vVLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID--------VLIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC--------EEEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 899999998764211 00 00112222221111 12223357888888764 4564 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 1048 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H 1048 (1436)
.||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 588886554 23344432 3789999999
No 227
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.10 E-value=1.5e-11 Score=144.29 Aligned_cols=122 Identities=18% Similarity=0.088 Sum_probs=80.2
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-CCCCcceEEEEC-CccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG-KDLKFSGRVTYN-GHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~-G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 35666664 4899999999999999999999999998 76 8999987 755432 2345789999999889999999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
|+ +. .+. ...+ .....+++++.+|+.+..|... .++
T Consensus 280 e~---~l--~~l----------~~~e------------------------~~~~~~e~l~~~gl~~f~~~~~-----~~l 315 (358)
T 2rcn_A 280 EF---GL--WHL----------EPEQ------------------------ITQGFVEFHDYLGHCKYRDCKH-----DAD 315 (358)
T ss_dssp TC---CC--CCC----------CHHH------------------------HHHTSGGGGGGTTCSSSTTCCS-----SSC
T ss_pred Hh---hh--cCC----------CHHH------------------------HHHHHHHHHHHcCCchhcCCCc-----ccC
Confidence 84 21 110 0000 0011233567788877666554 469
Q ss_pred ChhhhhHHHHHHHH
Q 046196 327 SGGQRKRLTTGEML 340 (1436)
Q Consensus 327 SGGqkqRvsia~al 340 (1436)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999764
No 228
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.09 E-value=1.8e-11 Score=146.24 Aligned_cols=174 Identities=16% Similarity=0.112 Sum_probs=102.6
Q ss_pred ceeeecceEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCC
Q 046196 167 LTILHDVSGIIKPQRL--TLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 244 (1436)
.+ |+|+|+.+++|++ ++|+||||||||||+++|+|.. +.|...... ......+.++|++|++.+++.+|
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----l~g~~~~~~---~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----FEGEPATHT---QPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----C-------C---CSSCEEEEEEEEEEC--CEEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----ccCCcCCCC---CccceEeeEEEEeecCccccccc
Confidence 45 9999999999999 9999999999999999999984 123211100 01112346899999988888999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHh-CCcc----ccccc--
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKIL-GLEV----CADTM-- 317 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~----~~dt~-- 317 (1436)
|.||+.|+..... +.+. ..+.+ ......+..|... ++.. ..|+.
T Consensus 99 v~D~~~~g~~~~~---------~~~~-------------~~i~~-------~i~~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQINK---------EDSY-------------KPIVE-------FIDAQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CCH---------HHHS-------------HHHHH-------HHHHHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhcccc---------chhh-------------hHHHH-------HHHHHHHHHHHHHHhhhhhhccccccccc
Confidence 9999988642110 0000 00000 0011122233332 4331 12222
Q ss_pred --cc--CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEE
Q 046196 318 --VG--DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVIS 382 (1436)
Q Consensus 318 --vg--~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~ 382 (1436)
+. ....++|+-.+ +.++++|..+++|+++|||+..|.......+.+.+++... ..+..|+.
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~ 214 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQ 214 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCC
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEe
Confidence 11 01113577666 7899999999999999999999999888888888886222 23444443
No 229
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.09 E-value=1.3e-11 Score=141.80 Aligned_cols=132 Identities=17% Similarity=0.207 Sum_probs=83.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQG 257 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~ 257 (1436)
+++.+++|.||+|||||||.+.|++.+.+. | . ..+.+.+|+|++.+++ .++++|+.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C------CCceEEEeccccccCC-hHHHHHHhccccccc
Confidence 367899999999999999999999998652 2 0 0224556699998775 489999987631100
Q ss_pred CCCchhhhhhhhHHHHHccCCCCC-cHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccc------cccCcccccCChhh
Q 046196 258 VGPRYEVLQELSRREKAANIKPDP-DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADT------MVGDEMLRGISGGQ 330 (1436)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------~vg~~~~~~LSGGq 330 (1436)
.-.. .+ .|+. |.+. ....++.+.- ..+| .+. .+...+||||
T Consensus 92 l~~~-------------~g-~p~a~d~~~---------------l~~~l~~l~~--g~~t~~~~~v~~p-~y~~~~sgGq 139 (290)
T 1odf_A 92 LLQG-------------RG-LPGTHDMKL---------------LQEVLNTIFN--NNEHPDQDTVVLP-KYDKSQFKGE 139 (290)
T ss_dssp GGSS-------------SC-STTSBCHHH---------------HHHHHHHHTC--------CCEEEEC-CEETTHHHHT
T ss_pred hhhh-------------cc-CcchhHHHH---------------HHHHHHHhhc--cCccccCcceeec-cCccccCCcc
Confidence 0000 00 0111 1111 1223444422 2222 122 2335799999
Q ss_pred hhHHHHH--HHHhcCCceeEEeCCCCCCChHH
Q 046196 331 RKRLTTG--EMLVGPARALFMDEISTGLDSST 360 (1436)
Q Consensus 331 kqRvsia--~al~~~~~illLDEptsgLD~~t 360 (1436)
+||+.+| +++ +|+|+|+||+++++|+..
T Consensus 140 ~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 140 GDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999997 555 899999999999999864
No 230
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.08 E-value=7e-11 Score=132.17 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=34.1
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhc--CcCCCC--CcceEEEECCc
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAG--KLGKDL--KFSGRVTYNGH 219 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~--~~~G~V~~~G~ 219 (1436)
+-+++|++++|+||||||||||++.|++ .+++.. .-.|.+.+++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 6799999999999999999999999999 444310 01456666553
No 231
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.06 E-value=3.2e-13 Score=157.95 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=93.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc--------CCCCCcceEEEECCccCCCccc------------------cceEEEe
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKL--------GKDLKFSGRVTYNGHGMEEFVP------------------QRTSAYI 233 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~--------~~~~~~~G~V~~~G~~~~~~~~------------------~~~~~yv 233 (1436)
=++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 455 8999999987654321 1234555
Q ss_pred ---cCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCC
Q 046196 234 ---SQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGL 310 (1436)
Q Consensus 234 ---~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 310 (1436)
+|+....++.+|.||..++... .......... ..... ..++.++..+++
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~------------~~~~~---------~~l~~~l~~vd~ 132 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHE------------VLCQR---------YLLDGVIALVDA 132 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSH------------HHHHH---------EEEEEEEEEEET
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCc------------cccCe---------EEECCEEEEEEH
Confidence 4554445566666666543110 0000000000 00000 000111223333
Q ss_pred cccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH
Q 046196 311 EVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPET 390 (1436)
Q Consensus 311 ~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 390 (1436)
.+..+.. .++|||||||+..+++++.+|+++ ||| ..+.+.++++. .+.+|+.++|...+.
T Consensus 133 ~~~~~~~------~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~---~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 133 VHADEQM------NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN---ARAPVYTVTHGDIDL 192 (318)
T ss_dssp TTHHHHH------HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC---SSSCEEECCSSCCCG
T ss_pred HHHHHHH------hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC---CCCeEEEecccCCCH
Confidence 3333322 159999999998888888888877 888 67777777753 345555566654333
No 232
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.06 E-value=8.5e-11 Score=121.58 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=37.1
Q ss_pred hhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCC
Q 046196 1006 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPS 1051 (1436)
Q Consensus 1006 ~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~~ 1051 (1436)
+.+|++|++|||++ +|......+.+.+.++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6655588899999988877888 888999643
No 233
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.05 E-value=4.3e-13 Score=157.83 Aligned_cols=164 Identities=13% Similarity=0.177 Sum_probs=104.6
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-------cccceEEEeecCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-------TFARISGYCEQTDIHS 936 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~q~~~~~ 936 (1436)
..+|+++|+.+++|++++|+|+||||||||+++|+|... +.+|+|.+.|.+.... ..++.++|++|+...+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 458999999999999999999999999999999999765 4578999988765321 2345689999987766
Q ss_pred CCC------------cHHHHHHHHH-----------------------------HhcCCCCCCHHHHHHHHHHHHHHcCC
Q 046196 937 PHV------------TVYESLVYSA-----------------------------WLRLPPEVDSDTRKMFVEEVMELVEL 975 (1436)
Q Consensus 937 ~~l------------Tv~e~l~~~~-----------------------------~l~~~~~~~~~~~~~~v~~vl~~l~l 975 (1436)
+.. +++|.+...- .+..+. ..++.....+.+.+...+
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~i 197 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELADM 197 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCSE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhccccE
Confidence 432 2233321100 000000 000000000011121111
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCcceeeCCCCCCCHHHHHHHHHHHHHHH
Q 046196 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037 (1436)
Q Consensus 976 ~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~------~p~illlDEPTsgLD~~~~~~i~~~l~~~~ 1037 (1436)
.-+ ++. .......+|+|++|++..+++++. +|++++ ||++|......+++.|.++.
T Consensus 198 vvl-NK~-Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 198 IAV-NKA-DDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EEE-ECC-STTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred EEE-Ech-hccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 100 111 000113479999999999999987 688876 99999999999999998864
No 234
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.05 E-value=1.5e-12 Score=137.69 Aligned_cols=139 Identities=13% Similarity=0.189 Sum_probs=84.0
Q ss_pred eEEEEEccCCCChhHHHHhHcCCCCC-CceeEEEEECCccCC------ccccc-ceEE----EeecCCCCCCCCcHHHHH
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGRKTG-GYVSGSITISGYPKN------QETFA-RISG----YCEQTDIHSPHVTVYESL 945 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~q~~~~~~~lTv~e~l 945 (1436)
++++|+|+||||||||++.|+|...+ +...|.|.+||.++. ...++ +.+| +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 57999999999999999999997652 123799999998732 12333 3456 778765543 111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHH-cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcc-------eeeCC
Q 046196 946 VYSAWLRLPPEVDSDTRKMFVEEVMEL-VELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1017 (1436)
Q Consensus 946 ~~~~~l~~~~~~~~~~~~~~v~~vl~~-l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~il-------llDEP 1017 (1436)
. +.+ ....+++.++. +. -.|+.++. +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Chh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 011 01123455554 43 24666653 59999999999999999999874 23444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCC
Q 046196 1018 TSG---LDARAAAIVMRTVRNTVDTGR 1041 (1436)
Q Consensus 1018 Tsg---LD~~~~~~i~~~l~~~~~~g~ 1041 (1436)
..+ +|......+.+.+.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 334455667777766555543
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.03 E-value=2.9e-11 Score=146.10 Aligned_cols=81 Identities=15% Similarity=0.079 Sum_probs=69.0
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc------c---ccceEEEecCCCCcC
Q 046196 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF------V---PQRTSAYISQNDLHI 240 (1436)
Q Consensus 170 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~---~~~~~~yv~Q~~~~~ 240 (1436)
-+++|+.+++|++++|+|+||||||||++.|+|++.++ +|+|.++|.+.... . .++.++|++|+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 47899999999999999999999999999999999876 89999987665321 1 134689999998878
Q ss_pred CCCCHHHHHHhhh
Q 046196 241 GEMTVRETLAFSA 253 (1436)
Q Consensus 241 ~~lTV~E~l~f~~ 253 (1436)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999874
No 236
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.02 E-value=6.3e-12 Score=147.89 Aligned_cols=181 Identities=13% Similarity=0.061 Sum_probs=108.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-------ccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-------PQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~~~ 240 (1436)
.+|+++|+.+++|++++|+||||||||||+++|+|.+.|+ +|+|.+.|.+..... .++.++|++|++..+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 4899999999999999999999999999999999999887 899999998764321 235689999987776
Q ss_pred CCC------------CHHHHHHhh----hhh---cCCCCchhhhhhhhHHHHHccC---CCCCc-HHHHHHHhhhhhhhh
Q 046196 241 GEM------------TVRETLAFS----ARC---QGVGPRYEVLQELSRREKAANI---KPDPD-IDLIMKAASLEGQEK 297 (1436)
Q Consensus 241 ~~l------------TV~E~l~f~----~~~---~~~~~~~~~~~~~~~~~~~~~i---~~~~~-~~~~~~~~~~~~~~~ 297 (1436)
... +++|.+... ..+ +.+|-+.. +. .....+.. .-+.. .+.. +. +
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~---~~-~v~~~~d~vl~v~d~~~~~~~-~~--i----- 187 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS---ET-AVADLTDFFLVLMLPGAGDEL-QG--I----- 187 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC---HH-HHHTTSSEEEEEECSCC---------C-----
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc---hh-hHHhhCCEEEEEEcCCCcccH-HH--H-----
Confidence 532 233333110 000 01111000 00 00000000 00000 0000 00 0
Q ss_pred hHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhc------CCceeEEeCCCCCCChHHHHHHHHHHHHH
Q 046196 298 NVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVG------PARALFMDEISTGLDSSTTYQIVNSLRQS 371 (1436)
Q Consensus 298 ~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~------~~~illLDEptsgLD~~t~~~i~~~l~~~ 371 (1436)
......+...+.+ +..|.. ....+|+|++|++..+.+++. .|++++ +|++|......+++.+.+.
T Consensus 188 ~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0001111222333 222211 113589999999999998887 578876 9999999999999998875
Q ss_pred H
Q 046196 372 I 372 (1436)
Q Consensus 372 ~ 372 (1436)
.
T Consensus 259 ~ 259 (337)
T 2qm8_A 259 R 259 (337)
T ss_dssp H
T ss_pred H
Confidence 3
No 237
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.02 E-value=3.4e-10 Score=138.04 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEE
Q 046196 989 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~----~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1064 (1436)
..||||||||++||++|+ .+|++++|||||++||+.....+.+.|+++.+.|.++|+|+|++ .....+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 58999999999999999999999999999866688999999994 567889999999
Q ss_pred ec
Q 046196 1065 KR 1066 (1436)
Q Consensus 1065 ~~ 1066 (1436)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 238
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.01 E-value=1.2e-11 Score=148.46 Aligned_cols=171 Identities=12% Similarity=0.119 Sum_probs=97.5
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHH
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLV 946 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~ 946 (1436)
-+++++++++|+.++|+|+|||||||||++|+|... .+.+++... ....+|++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 478999999999999999999999999999999742 234443321 2233556655431 1112211110
Q ss_pred HHHHhcCCCCCCHHHH--HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 947 YSAWLRLPPEVDSDTR--KMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 947 ~~~~l~~~~~~~~~~~--~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
+............... .+.++.++..+++. +. ....||+|++||+.+|++|+.+|.+|++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 0000000000111000 00011122222222 11 1346999999999999999999999999 999998
Q ss_pred HHHHHHHHHHH-HHhCCCEEEEEecCCCHHHHHhhCeEE
Q 046196 1025 AAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFDAFDELL 1062 (1436)
Q Consensus 1025 ~~~~i~~~l~~-~~~~g~tvi~~~H~~~~~~~~~~D~v~ 1062 (1436)
.+ ..++.+++ +.+.|.+++.+|......+-++++.+.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 77 44444444 444577776655432334555555543
No 239
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.01 E-value=1e-11 Score=144.91 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=94.6
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-------cccce--EEEeecCCCCCCCCcHHHH
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-------TFARI--SGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~q~~~~~~~lTv~e~ 944 (1436)
.++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+++. +.+++|...+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999876 4579999999876321 11222 4589999888999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
+.+...... +. -+++..|+.+..+. =.++.-.|++++..++.+++||.+| |
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t-~---- 254 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALA-G---- 254 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGG-T----
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHH-H----
Confidence 976532110 00 01111222221111 1223334888888777777777444 3
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEecC
Q 046196 1025 AAAIVMRTVRNTVD-TGRTVVCTIHQ 1049 (1436)
Q Consensus 1025 ~~~~i~~~l~~~~~-~g~tvi~~~H~ 1049 (1436)
+.+++.++.+.+ .+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 455556666653 48999999995
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.00 E-value=4.6e-11 Score=139.46 Aligned_cols=75 Identities=15% Similarity=0.051 Sum_probs=62.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---------cceEEEecCCCCcCCCCCHH
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---------QRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
..++|++++|+||||||||||++.|+|.+.|+ +|+|.+.|.++..... +..+.+++|.....+.+||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 34789999999999999999999999999887 8999999988754321 12356999998889999999
Q ss_pred HHHHhhh
Q 046196 247 ETLAFSA 253 (1436)
Q Consensus 247 E~l~f~~ 253 (1436)
|++.++.
T Consensus 202 e~l~~~~ 208 (328)
T 3e70_C 202 DAIQHAK 208 (328)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
No 241
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.00 E-value=1.9e-10 Score=122.87 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=42.1
Q ss_pred hhCCCcceeeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 046196 1006 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1052 (1436)
Q Consensus 1006 ~~~p~illlDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 1052 (1436)
+.+|++|+||||++ ++|+.....+.+.+.+..++|+++|+|||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 55999999999995 999999999999999887789999999998753
No 242
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.98 E-value=3.1e-11 Score=144.97 Aligned_cols=170 Identities=14% Similarity=0.118 Sum_probs=98.1
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHH
Q 046196 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETL 249 (1436)
Q Consensus 170 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l 249 (1436)
-+++++++++|+.++|+|+|||||||||++|+|..+ .+.+.+.+... ..++++.+++. ..+++.|+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~--p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLS--PNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSC--CEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceec--ceeeEEEecCc--ceEEEEecc
Confidence 489999999999999999999999999999999742 23333333222 23556655431 111222211
Q ss_pred Hh---hhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 250 AF---SARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 250 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
-+ .....+.+. .+.+. ...++.++..+++. ++....+
T Consensus 214 Gli~~a~~~~~L~~------------------------~fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------------------------EFLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------------------------HHHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------------------------HHHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 11 000000000 00000 00011122333332 2334469
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
|+||+||+.+|++|...|.++++ +.+|.... ..++.+++.....+.+++.+..+....+.++++.|
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999877 55555555443333455544444444455555543
No 243
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.94 E-value=2.6e-12 Score=158.68 Aligned_cols=173 Identities=12% Similarity=0.047 Sum_probs=102.0
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCC-------
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS------- 936 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~------- 936 (1436)
..+++++++.+++|+.++|+|||||||||||++|+|..+ +.+|.|.++|.+.-.......+++..|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 358999999999999999999999999999999999886 45899999986521111123345555443322
Q ss_pred ---------------CCCcHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcc--ccccccc-C----CCCCCCCH
Q 046196 937 ---------------PHVTVYESLVYSAWLRLPP-EVDSDTRKMFVEEVMELVELNP--IREALVG-L----PGVSGLST 993 (1436)
Q Consensus 937 ---------------~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~vl~~l~l~~--~~~~~~g-~----~~~~~LSg 993 (1436)
..++..|++.+........ .... .....++++++.+...+ +...+.. . .....+|+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 2344444433322111100 0000 00001233333333211 1111100 0 00134799
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCC
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPS 1051 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~ 1051 (1436)
|||||++++. + | |+|||+.+...+++.|.++...|+|+++ ++|+.+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ 451 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE 451 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH
Confidence 9999987752 1 7 9999998877777777766666788875 788754
No 244
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.92 E-value=8.9e-12 Score=153.91 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=65.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
.+++++++.+++|+.++|+|||||||||||++|+|+++|+ +|.|++.|.+--.......++++.|........|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 4789999999999999999999999999999999999987 8999999865222212345667776654334568888
Q ss_pred HHHhhhh
Q 046196 248 TLAFSAR 254 (1436)
Q Consensus 248 ~l~f~~~ 254 (1436)
.+..+.+
T Consensus 325 ~l~~~LR 331 (511)
T 2oap_1 325 LLRAALR 331 (511)
T ss_dssp HHHTTGG
T ss_pred HHHHhhc
Confidence 8876655
No 245
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.92 E-value=2.2e-09 Score=128.27 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=72.9
Q ss_pred HHHHHHHhCCcc-------cccccccC----cccccCChhhhhHH------HHHHHHhcC-CceeEEeCCCCCCChHHHH
Q 046196 301 TDYVLKILGLEV-------CADTMVGD----EMLRGISGGQRKRL------TTGEMLVGP-ARALFMDEISTGLDSSTTY 362 (1436)
Q Consensus 301 ~~~~l~~lgL~~-------~~dt~vg~----~~~~~LSGGqkqRv------sia~al~~~-~~illLDEptsgLD~~t~~ 362 (1436)
++..++.+++++ ..+..+.+ ..+..||||||||+ ++|+++..+ |++|+|||||+|||+.++.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~ 324 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRA 324 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHH
Confidence 345677777765 11222222 34567999999988 557899999 9999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 363 QIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 363 ~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
.+.+.|+++. .+++ |+.++|+. ++...+|++++|+
T Consensus 325 ~l~~~l~~~~--~~~~-vi~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVK--SIPQ-MIIITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCC--SCSE-EEEEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHhc--cCCe-EEEEEChH-HHHhhCCEEEEEE
Confidence 9999998752 2344 55566765 5788999999997
No 246
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.92 E-value=2.5e-11 Score=146.10 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=90.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEec-----
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYIS----- 234 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~----- 234 (1436)
..+|+++ + .++|++++|+|||||||||||++|+|.++++ +|+|.+.|.++....+ .+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4478888 4 4899999999999999999999999999887 8999999887642111 12234433
Q ss_pred ----CCCCc--CCC----CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHH
Q 046196 235 ----QNDLH--IGE----MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYV 304 (1436)
Q Consensus 235 ----Q~~~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1436)
|++.. +++ .|+++++.++..-..+-. . +... + ....++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~------t---------lh~~-~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMS------T---------LHTN-T--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEE------E---------ECCS-S--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCccc------c---------cchh-h--------------HHHHHH-H
Confidence 77554 344 588888876531100000 0 0000 0 001112 3
Q ss_pred HHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeE
Q 046196 305 LKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348 (1436)
Q Consensus 305 l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~ill 348 (1436)
|..+|++... ....|||||+|| ||++++.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5667876532 224699999999 9999999999876
No 247
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.92 E-value=4.6e-10 Score=134.27 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=89.9
Q ss_pred cccc-eEEEeCCeEEEEEccCCCChhHHHHhH--cCCCCC---CceeEEEEECCccCCcccccceEEEeecCCCCCCCCc
Q 046196 867 LKGV-SGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTG---GYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 867 L~~v-s~~i~~Ge~~ai~G~nGaGKSTLl~~L--~g~~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 940 (1436)
|+.+ .+-|++|++++|+||||||||||++.| .+..++ +...+.+++++.....
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~--------------------- 225 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR--------------------- 225 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------
Confidence 4443 368999999999999999999999954 455431 1123567777653210
Q ss_pred HHHHHH-HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH-HHHHHHHHHHHHh--hCCCcceeeC
Q 046196 941 VYESLV-YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDE 1016 (1436)
Q Consensus 941 v~e~l~-~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg-GqrqRl~iA~aL~--~~p~illlDE 1016 (1436)
. +.+. ....+. ... +++++.+-+ . +..+. .+.+.+.-+.+++ .+|+++++||
T Consensus 226 ~-~rl~~~a~~~g----l~~-------~~vleni~~--------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs 281 (400)
T 3lda_A 226 P-VRLVSIAQRFG----LDP-------DDALNNVAY--------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDS 281 (400)
T ss_dssp H-HHHHHHHHHTT----CCH-------HHHHHTEEE--------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEET
T ss_pred H-HHHHHHHHHcC----CCh-------HhHhhcEEE--------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecc
Confidence 0 0010 000110 110 112221111 0 11222 2334444444443 4699999999
Q ss_pred CCCCCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCC------------------HHHHHhhCeEEEEe
Q 046196 1017 PTSGLDARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFDAFDELLLMK 1065 (1436)
Q Consensus 1017 PTsgLD~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~D~v~~l~ 1065 (1436)
||+.+|+... ..+++.|++++++ |+|||+|+|..+ ..+...+|.++.|.
T Consensus 282 ~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~ 361 (400)
T 3lda_A 282 VMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFK 361 (400)
T ss_dssp GGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEE
T ss_pred hhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEE
Confidence 9999997533 5678888888755 999999999721 12345679999998
Q ss_pred cC
Q 046196 1066 RG 1067 (1436)
Q Consensus 1066 ~G 1067 (1436)
++
T Consensus 362 ~~ 363 (400)
T 3lda_A 362 KG 363 (400)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.91 E-value=7e-11 Score=136.93 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=80.9
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEE---CCccCCcc--ccc-ceEEEeecCCCCC-----CCCcHH
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITI---SGYPKNQE--TFA-RISGYCEQTDIHS-----PHVTVY 942 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~q~~~~~-----~~lTv~ 942 (1436)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.... ... +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3469999999999999999999999 765 56899999 88776432 122 2479999988553 68899
Q ss_pred HHH--HHHH----HhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHH
Q 046196 943 ESL--VYSA----WLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSGLSTEQRKRLTIAVE 1004 (1436)
Q Consensus 943 e~l--~~~~----~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~LSgGqrqRl~iA~a 1004 (1436)
|++ .|.. .++.....+..+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 4431 0112111112222345789999999986 556553 4699989999999874
No 249
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.91 E-value=6e-11 Score=136.33 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=84.5
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHH----
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAW---- 950 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~---- 950 (1436)
+++.++||.|+||||||||.+.|++.... .| .. .+.+.+|+|++.+++. ++++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~~------~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------GG------EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------GG------GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------CC------CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 47889999999999999999999987641 12 00 2345566999988764 88889877521
Q ss_pred hc---CCCCCCHHHHHHHHHHHHHHcCCc--cc--ccccccCCCCCCCCHHHHHHHHHH--HHHhhCCCcceeeCCCCCC
Q 046196 951 LR---LPPEVDSDTRKMFVEEVMELVELN--PI--REALVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 951 l~---~~~~~~~~~~~~~v~~vl~~l~l~--~~--~~~~~g~~~~~~LSgGqrqRl~iA--~aL~~~p~illlDEPTsgL 1021 (1436)
+. .|...+ .....+.++.+... .. ....+. .....+||||+||+.+| +++ +|+|||+||||+++
T Consensus 93 ~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhH----HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 122222 22345556655432 00 001111 11256899999999997 555 99999999999999
Q ss_pred CHHH
Q 046196 1022 DARA 1025 (1436)
Q Consensus 1022 D~~~ 1025 (1436)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9864
No 250
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.91 E-value=3.9e-12 Score=153.06 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=95.0
Q ss_pred hccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-------ccccceEE
Q 046196 855 KAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-------ETFARISG 927 (1436)
Q Consensus 855 ~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~g 927 (1436)
++.+..++...+|+++ + .++|++++|+|||||||||||++|+|... +.+|+|.+.|.|+.. ....+.+|
T Consensus 147 ~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g 222 (418)
T 1p9r_A 147 HSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNPRVD 222 (418)
T ss_dssp GGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBGGGT
T ss_pred HHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEccccC
Confidence 3344444455689998 5 48999999999999999999999999876 347999998877532 11223344
Q ss_pred Eee---------cCCCC--CCC----CcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046196 928 YCE---------QTDIH--SPH----VTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 928 yv~---------q~~~~--~~~----lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L 991 (1436)
+.+ |++.. ... .|+.+++.++..-... .........+.+ +.+..+++.+.. . ...|
T Consensus 223 ~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~-----~~~L 294 (418)
T 1p9r_A 223 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--I-----SSSL 294 (418)
T ss_dssp BCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--H-----HHHE
T ss_pred cCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--H-----HHHH
Confidence 544 76544 233 5889988775421100 000001111122 346677887543 2 2469
Q ss_pred CHHHHHHHHHHHHHhhCCCcce
Q 046196 992 STEQRKRLTIAVELVANPSIIF 1013 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~ill 1013 (1436)
||||+|| ||++|+.+|++..
T Consensus 295 Sgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 295 LGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHH--hhhhhcCCCCccC
Confidence 9999999 9999999999875
No 251
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.91 E-value=3.6e-10 Score=130.95 Aligned_cols=125 Identities=13% Similarity=0.076 Sum_probs=78.6
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE---CCccCCCcccc---ceEEEecCCCCcC-----CCCCH
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTY---NGHGMEEFVPQ---RTSAYISQNDLHI-----GEMTV 245 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~~---~~~~yv~Q~~~~~-----~~lTV 245 (1436)
+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+..... +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3568999999999999999999999 88887 899999 88876543211 2479999997543 68899
Q ss_pred HHHH--HhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc-cccccccCcc
Q 046196 246 RETL--AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV-CADTMVGDEM 322 (1436)
Q Consensus 246 ~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~ 322 (1436)
|++ .|+ +.. +. . |+ ..+..+. .+....++.+++.+||++ .++..
T Consensus 238 -e~l~~~f~-~~~------~~-~--c~---~~~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~----- 284 (302)
T 2yv5_A 238 -REVRNYFR-EFL------RY-Q--CK---YPDCTHT--------------NEPGCAVKEAVKNGEISCERYKSY----- 284 (302)
T ss_dssp -GGGGGGCG-GGH------HH-H--HH---STTCCSS--------------SCTTCHHHHHHHTTSSCHHHHHHH-----
T ss_pred -HHHHHHHH-HHH------Hc-c--CC---CCCCCCC--------------CCCCCHHHHHHHcCCCCHHHHHHH-----
Confidence 888 443 100 00 0 00 0000000 011224566788999975 55543
Q ss_pred cccCChhhhhHHHHHH
Q 046196 323 LRGISGGQRKRLTTGE 338 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~ 338 (1436)
++.|||.++|++.|||
T Consensus 285 ~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 285 LKIIKVYLEEIKELCR 300 (302)
T ss_dssp HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4569998899999986
No 252
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.90 E-value=2.7e-10 Score=121.63 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=34.7
Q ss_pred hcCCceeEEeCCCC-CCChHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 046196 341 VGPARALFMDEIST-GLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP 388 (1436)
Q Consensus 341 ~~~~~illLDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 388 (1436)
+.+|++|+||||++ ++|......+.+.+..... .+.++|++.+++..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChh
Confidence 34889999999985 9999999988888877643 34566665444443
No 253
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.88 E-value=9.5e-13 Score=143.21 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=43.2
Q ss_pred HHH-HHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 336 TGE-MLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 336 ia~-al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+.. .+.| . . ..+|.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 455 7788999999999999999999999999888765421 1223 1 2 57899988864
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.86 E-value=6.4e-11 Score=129.71 Aligned_cols=30 Identities=40% Similarity=0.492 Sum_probs=28.2
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999875
No 255
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=1.5e-09 Score=128.80 Aligned_cols=164 Identities=14% Similarity=0.005 Sum_probs=85.5
Q ss_pred EEEEccCCCChhHHHHhHcC-CCCCCceeEEEEECCccCCc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAG-RKTGGYVSGSITISGYPKNQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEV 957 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g-~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~ 957 (1436)
+.|.||||+|||||+++|+| ... +..|.+.++|.+... ......+++++|.+.+..... +. ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--DM----------GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--hc----------CCc
Confidence 89999999999999999999 443 357899998876432 112345678887654311110 00 000
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHH
Q 046196 958 DSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037 (1436)
Q Consensus 958 ~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~ 1037 (1436)
... .+++.++.+......+... .+|| +..+|+++++|||++ ||+.+...+.+.+.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333322111011110 3565 788999999999999 99999999999998864
Q ss_pred hCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHhhh
Q 046196 1038 DTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEG 1089 (1436)
Q Consensus 1038 ~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~ 1089 (1436)
.++++|+++|+++...-..-+| ...+.+.|+.. .++.++...
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~~ 204 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILSD 204 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHHH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHHH
Confidence 3689999999976311122222 24555666542 455555543
No 256
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.82 E-value=2.4e-11 Score=144.54 Aligned_cols=169 Identities=14% Similarity=0.179 Sum_probs=114.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhc------------CcCCCCCcceEEEECCccCCC----ccccceE---EEecCC
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAG------------KLGKDLKFSGRVTYNGHGMEE----FVPQRTS---AYISQN 236 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G------------~~~~~~~~~G~V~~~G~~~~~----~~~~~~~---~yv~Q~ 236 (1436)
.+++|..++|+|+||||||||+++|+| .++|+ +|.|.++|..+.. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 567899999999999999999999999 33444 8999999854321 1223333 466777
Q ss_pred CCcCCCCCHHHHH--HhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccc
Q 046196 237 DLHIGEMTVRETL--AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCA 314 (1436)
Q Consensus 237 ~~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 314 (1436)
+-+...++..|++ .|-...+.. +.++..+...+
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~~-- 127 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAFD-- 127 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECCC--
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhccc--
Confidence 7767666665544 232211110 00111111111
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhcCC--ceeEEeCCCCCCChHHHHHHHHHHHHH-HHhcCCeEEEEEecCchhHH
Q 046196 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPA--RALFMDEISTGLDSSTTYQIVNSLRQS-IHILNGTAVISLLQPAPETY 391 (1436)
Q Consensus 315 dt~vg~~~~~~LSGGqkqRvsia~al~~~~--~illLDEptsgLD~~t~~~i~~~l~~~-~~~~~~t~ii~i~q~~~~~~ 391 (1436)
+..+..+||+. +| +++++|||+.++|.......++.++.. .. ++++++ .|...++.
T Consensus 128 -----d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~--~g~ti~--sh~~~~~~ 186 (392)
T 1ni3_A 128 -----DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR--GANTLE--MKAKKEEQ 186 (392)
T ss_dssp -----TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--SSCSSS--HHHHHHHH
T ss_pred -----cceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh--cCCccc--cccHHHHH
Confidence 22233467653 88 999999999999999999888888875 32 344443 78888899
Q ss_pred HhcccEE-EecCC-eEEEecChhH
Q 046196 392 ELFDDLI-LLSDG-QIVYQGPREN 413 (1436)
Q Consensus 392 ~~~D~ii-vL~~G-~iv~~G~~~~ 413 (1436)
++||++. +|.+| ++++.|+.++
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred HHHHHHHHHhccCCceeecCCCCH
Confidence 9999999 99999 9988776543
No 257
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.81 E-value=2.4e-11 Score=138.86 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=92.5
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCC-CcCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQND-LHIGEM 243 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~-~~~~~l 243 (1436)
.+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|+. ...+.+
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 4899999999999 999999999999999999998754 789999987643221 23456666653 344555
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
++.|++.+....++ .... + .+.... +..+
T Consensus 107 ~~~Deid~~~~~r~--------------~~~~--------~------------------------~~~~~~-----~~~l 135 (274)
T 2x8a_A 107 IFFDEVDALCPRRS--------------DRET--------G------------------------ASVRVV-----NQLL 135 (274)
T ss_dssp EEEETCTTTCC-------------------------------------------------------CTTHH-----HHHH
T ss_pred EeeehhhhhhcccC--------------CCcc--------h------------------------HHHHHH-----HHHH
Confidence 55555544221000 0000 0 000011 1223
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCC------------CCChHHHHHHHHHH
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEIST------------GLDSSTTYQIVNSL 368 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEpts------------gLD~~t~~~i~~~l 368 (1436)
..|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 136 ~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 136 TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 459999999999999999999986 88864 23555566665543
No 258
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.80 E-value=3.5e-09 Score=126.71 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=42.3
Q ss_pred cCCceeEEeCCCCCCChHHH------------HHHHHHHHHHHHhcCCeEEEEEecCc-------------------hhH
Q 046196 342 GPARALFMDEISTGLDSSTT------------YQIVNSLRQSIHILNGTAVISLLQPA-------------------PET 390 (1436)
Q Consensus 342 ~~~~illLDEptsgLD~~t~------------~~i~~~l~~~~~~~~~t~ii~i~q~~-------------------~~~ 390 (1436)
.+|+++++|||++.+|+... .++++.|+++++..+.++|+ ++|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl-v~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV-TNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EEeecccCCccccccCCCccCCchhHH
Confidence 57999999999999997543 66788888888765545444 56651 223
Q ss_pred HHhcccEEEecCCe
Q 046196 391 YELFDDLILLSDGQ 404 (1436)
Q Consensus 391 ~~~~D~iivL~~G~ 404 (1436)
...+|.++.|++|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56688888887653
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.77 E-value=6e-11 Score=129.95 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=67.6
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCC-CceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhc
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLR 952 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~ 952 (1436)
.++|++++|+||||||||||+++|+|...+ |+..|.|.++|....... .+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~--------------------~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL--------------------LEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH--------------------HGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH--------------------HHHhcccccCC
Confidence 579999999999999999999999997642 123566666554432211 11110000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH-HHHhhCCCcceeeCCC
Q 046196 953 LPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPT 1018 (1436)
Q Consensus 953 ~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA-~aL~~~p~illlDEPT 1018 (1436)
.+...+... ..+.+..+...+-.+...... ..++|+||+||+++| ++++.++.++++|||.
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 011111111 122222221111111111111 235799999999998 8899999999999984
No 260
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.77 E-value=2e-11 Score=145.17 Aligned_cols=170 Identities=9% Similarity=0.083 Sum_probs=114.9
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCC----------CCCceeEEEEECCccCCc----ccccce---EEEeecCCCC
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYVSGSITISGYPKNQ----ETFARI---SGYCEQTDIH 935 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~---~gyv~q~~~~ 935 (1436)
.+++|..++|+|+||||||||+|+|+|.. +-.+..|.+.++|..... ...++. ..++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 55789999999999999999999999932 112578999998843211 001122 2467777777
Q ss_pred CCCCcHHHHH--HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC--Cc
Q 046196 936 SPHVTVYESL--VYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANP--SI 1011 (1436)
Q Consensus 936 ~~~lTv~e~l--~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p--~i 1011 (1436)
.+..+..|.+ .|.+.++.. +.++..++..+ + ..+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d-----~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--D-----AEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--T-----TCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--c-----ceeeeecccc------------Ccchhh
Confidence 7777766655 443333311 11111111111 1 1122345432 89 99
Q ss_pred ceeeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCCHHHHHhhCeEE-EEecCc-EEEEEcCCC
Q 046196 1012 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFDAFDELL-LMKRGG-EEIYVGPLG 1077 (1436)
Q Consensus 1012 lllDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~D~v~-~l~~Gg-~~~y~G~~~ 1077 (1436)
+++|||+.++|+......++.+++. .+.|.||+ +|... ++.+.+|++. +|.+ | +.++.|...
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCC
Confidence 9999999999999999999999988 66677764 99865 6788999999 8876 6 677777664
No 261
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=6.4e-09 Score=107.43 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=29.5
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 56666 8999999999999999999999998765
No 262
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.75 E-value=3.8e-10 Score=131.32 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=59.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEE---CCccCCCccccceEEEecCCCCcCCCCCHHHHHHhh
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLG--KDLKFSGRVTY---NGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFS 252 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~---~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~ 252 (1436)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|...... ..+.++++ |+..+.+.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8999999999999999999999999987 76 899999 88764321 12446788 777777889999999876
Q ss_pred hhh
Q 046196 253 ARC 255 (1436)
Q Consensus 253 ~~~ 255 (1436)
.++
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 263
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.73 E-value=4e-12 Score=138.27 Aligned_cols=56 Identities=11% Similarity=0.227 Sum_probs=43.8
Q ss_pred HHH-HHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 1001 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 1001 iA~-aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
+++ +++.+|++++|||+|+++|..+...|.+.|.+..+. +..+|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678899999999999999999999999998876543 2334622 4689988876
No 264
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.69 E-value=2e-10 Score=135.29 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=102.2
Q ss_pred ceeeecceEEEeCC-------eEEEEEcCCCCCHHHHHHHHhcCcCCCC-CcceEEEECCccCCCc---cccceEEEecC
Q 046196 167 LTILHDVSGIIKPQ-------RLTLLLGPPSSGKTTLLLALAGKLGKDL-KFSGRVTYNGHGMEEF---VPQRTSAYISQ 235 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~---~~~~~~~yv~Q 235 (1436)
..+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34788888888876 8899999999999999999999984321 1366666665544221 11346899999
Q ss_pred CCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccc
Q 046196 236 NDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD 315 (1436)
Q Consensus 236 ~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 315 (1436)
.+.+.+ ++.|++....+..+. +.+. ... + ....++..+..++|.. ++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~----~i~~--~~~-------~-----------------~~~~i~~~l~~~~li~-at 157 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQI----DIMI--GKG-------P-----------------SAKSIRIDIQPFTLVG-AT 157 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EE
T ss_pred hhhcCH--HHHHHHHHHHHhccc----ceee--ccC-------c-----------------ccccccccCCCeEEEE-ec
Confidence 876554 788888543321110 0000 000 0 0001122233344433 44
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcc
Q 046196 316 TMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFD 395 (1436)
Q Consensus 316 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 395 (1436)
+.. ..||+|+|||+.++ .+||+.+..++.+.|++.++..+ +.++...+..+++
T Consensus 158 ~~~-----~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~------~~~~~~~~~~ia~ 210 (334)
T 1in4_A 158 TRS-----GLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD------VEIEDAAAEMIAK 210 (334)
T ss_dssp SCG-----GGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT------CCBCHHHHHHHHH
T ss_pred CCc-----ccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC------CCcCHHHHHHHHH
Confidence 443 35999999998654 78899999999999988765432 1344444445555
Q ss_pred c
Q 046196 396 D 396 (1436)
Q Consensus 396 ~ 396 (1436)
+
T Consensus 211 ~ 211 (334)
T 1in4_A 211 R 211 (334)
T ss_dssp T
T ss_pred h
Confidence 3
No 265
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.69 E-value=1.5e-09 Score=124.97 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=66.1
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEE---CCccCCcc-cccce-EEEeecCCCCCC----CCcHH
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITI---SGYPKNQE-TFARI-SGYCEQTDIHSP----HVTVY 942 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~q~~~~~~----~lTv~ 942 (1436)
+.+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|...... ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 3456899999999999999999999999876 56899998 77665321 12222 799999987655 6889
Q ss_pred HHHH--HHH------HhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 943 ESLV--YSA------WLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 943 e~l~--~~~------~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
|++. |.. .++........+....++++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 321 1122211111222335789999999976433221 246667766
No 266
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.68 E-value=2e-10 Score=135.32 Aligned_cols=152 Identities=16% Similarity=0.073 Sum_probs=94.4
Q ss_pred cccccccceEEEeCC-------eEEEEEccCCCChhHHHHhHcCCCCC--CceeEEEEECCccCCc---ccccceEEEee
Q 046196 863 RLEFLKGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYVSGSITISGYPKNQ---ETFARISGYCE 930 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~G-------e~~ai~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~ 930 (1436)
+..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.++.. ...++.++++.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 345889999999877 88999999999999999999986521 1345655555443211 11134688999
Q ss_pred cCCCCCCCCcHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 046196 931 QTDIHSPHVTVYESLVYSAWLRLPPE-VDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANP 1009 (1436)
Q Consensus 931 q~~~~~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p 1009 (1436)
|.+.+.+ ++.|++..........- .......+.+++.++.+++.. .++. ...||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 8877765 78888854322111000 001111122334444444433 3332 346999999998665
Q ss_pred CcceeeCCCCCCCHHHHHHHHHHHHHHHh
Q 046196 1010 SIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038 (1436)
Q Consensus 1010 ~illlDEPTsgLD~~~~~~i~~~l~~~~~ 1038 (1436)
.+||+.+...+.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 78888899999999988764
No 267
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.66 E-value=2e-09 Score=124.78 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=51.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE---CCccCCCccc---cceEEEecCCCC----------
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTY---NGHGMEEFVP---QRTSAYISQNDL---------- 238 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~---~~~~~yv~Q~~~---------- 238 (1436)
+.+.+|++++|+|||||||||||++|+|...|+ +|+|.+ +|+++..... .+.++|++|++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 345679999999999999999999999999998 999999 8887754321 135799999864
Q ss_pred ------cCCCCCHHHHHHhh
Q 046196 239 ------HIGEMTVRETLAFS 252 (1436)
Q Consensus 239 ------~~~~lTV~E~l~f~ 252 (1436)
+++++|| ||+.|+
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHHhccc-ccCcCC
Confidence 5788888 888875
No 268
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=2.1e-08 Score=118.78 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=67.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc-CcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCC
Q 046196 183 TLLLGPPSSGKTTLLLALAG-KLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGP 260 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G-~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~ 260 (1436)
++|.||||+|||||+++|+| .+.++ .|+|.++|.+...... ...+++++|.+.+..+.+ ..+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS----------DMGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh----------hcCCcc
Confidence 89999999999999999999 56666 7999999876543222 245677877654311110 000000
Q ss_pred chhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHH
Q 046196 261 RYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340 (1436)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al 340 (1436)
+ ..+...++.+......+..+ .+|| +
T Consensus 106 ~-------------------------------------~~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------------------------IVIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp H-------------------------------------HHHHHHHHHHTTTTC---------------------------
T ss_pred h-------------------------------------HHHHHHHHHHHHhccccccc------cccc-----------c
Confidence 0 00011111111100001000 3566 7
Q ss_pred hcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 046196 341 VGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP 388 (1436)
Q Consensus 341 ~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 388 (1436)
.++|+++++|||++ ||..+...+.+.+.+.. .++++|.++|...
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 78999999999999 99999999999988742 3566666666544
No 269
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.64 E-value=3e-11 Score=138.09 Aligned_cols=129 Identities=18% Similarity=0.189 Sum_probs=88.5
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---cccceEEEeecCC-CCCCC
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---TFARISGYCEQTD-IHSPH 938 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~-~~~~~ 938 (1436)
...+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++... ...+.+++++|.. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 346899999999999 99999999999999999999764 27899999775322 1234467777764 45566
Q ss_pred CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 046196 939 VTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1018 (1436)
Q Consensus 939 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPT 1018 (1436)
+++.|++...+..+ . ... .+ .+....+.. ...|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r-----~-~~~---~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-----S-DRE---TG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-----C-CCc---ch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 77777765322111 0 000 00 122223333 2358999999999999999999986 8886
Q ss_pred C
Q 046196 1019 S 1019 (1436)
Q Consensus 1019 s 1019 (1436)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 4
No 270
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.62 E-value=1.7e-08 Score=123.78 Aligned_cols=179 Identities=12% Similarity=0.131 Sum_probs=108.3
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeE-EEEECCccCCccccc-ceEEEeecCCCCCCCCcH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSG-SITISGYPKNQETFA-RISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~-~~~gyv~q~~~~~~~lTv 941 (1436)
...|+++++-+++|+++.|.|++|+|||||+..+++... ...| .|.+.+...+...+. |..+... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH
Confidence 346899998999999999999999999999999987532 1123 333322222211111 1000000 0000
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCcceeeCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTS 1019 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~--~~p~illlDEPTs 1019 (1436)
+. ++. .....++ ...+.+.++.++..++.-. . ..++|.+|.+ ..++.++ .+|+++++|+++.
T Consensus 261 -~~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~---d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QN------LRT-GKLTPED-WGKLTMAMGSLSNAGIYID---D--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HH------HHT-SCCCHHH-HHHHHHHHHHHHSSCEEEE---C--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HH------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEEEE---C--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 00 111 1122222 2234555555544333211 1 2368999987 5667776 6899999999999
Q ss_pred CCCH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--CCH-------HHHHhhCeEEEEecC
Q 046196 1020 GLDA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1020 gLD~--------~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~D~v~~l~~G 1067 (1436)
..++ .....+.+.|+.++++ |++||+++| + |.. .+...+|.|++|.++
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 7742 3446777888888755 899999999 2 431 356679999999864
No 271
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.62 E-value=7.5e-09 Score=119.23 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=44.1
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE---CCccCCCcccc-ce-EEEecCCCCcCC----CCCH
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTY---NGHGMEEFVPQ-RT-SAYISQNDLHIG----EMTV 245 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~~-~~-~~yv~Q~~~~~~----~lTV 245 (1436)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+..... +. .+|+.|++.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 445689999999999999999999999999887 899998 78766432211 12 699999986654 6899
Q ss_pred HHHHH
Q 046196 246 RETLA 250 (1436)
Q Consensus 246 ~E~l~ 250 (1436)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 9984
No 272
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.61 E-value=4.8e-09 Score=117.35 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=44.0
Q ss_pred hCCCcceeeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHH-------HHHhhCeEEEEec
Q 046196 1007 ANPSIIFMDEPTSGL--DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSID-------IFDAFDELLLMKR 1066 (1436)
Q Consensus 1007 ~~p~illlDEPTsgL--D~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~-------~~~~~D~v~~l~~ 1066 (1436)
.+|+++++|+|++.+ |+.....++..+.+++ +.|+|||+++|..... +.+.+|.++.|.+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 5544555555565554 5689999999976521 3567899999975
No 273
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.59 E-value=4e-08 Score=113.51 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=79.6
Q ss_pred ceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhh
Q 046196 173 VSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFS 252 (1436)
Q Consensus 173 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~ 252 (1436)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+... . ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r-----~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR-----A--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC-----H--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccccc-----H--------------HHHHHH---
Confidence 45567899999999999999999999999998775 6788776643210 0 000111
Q ss_pred hhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhh
Q 046196 253 ARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRK 332 (1436)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkq 332 (1436)
...++.+|++. + ...|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~-----~-----~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV-----I-----SHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE-----E-----CCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE-----E-----ecCCccCHH
Confidence 11233455542 1 247899999
Q ss_pred HH---HHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHH
Q 046196 333 RL---TTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSI 372 (1436)
Q Consensus 333 Rv---sia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~ 372 (1436)
++ ++++++..+++++++|+|.. ......+++.|+++.
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 99 89999999999999999973 455566666666554
No 274
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.58 E-value=5.8e-09 Score=120.83 Aligned_cols=101 Identities=18% Similarity=0.243 Sum_probs=64.7
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEE---CCccCCccc--c-cceEEEeecCCC------------
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITI---SGYPKNQET--F-ARISGYCEQTDI------------ 934 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~q~~~------------ 934 (1436)
.+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|.++.... . .+.+||++|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 345799999999999999999999999877 56899999 887754321 1 134799999864
Q ss_pred ----CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 046196 935 ----HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREAL 982 (1436)
Q Consensus 935 ----~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~ 982 (1436)
++|++|+ ||+.|.. +. . ..+....++++++.++|. +..+..
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788999 8887642 11 1 112234578999999995 555544
No 275
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.52 E-value=2.1e-08 Score=121.88 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=49.2
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF 224 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~ 224 (1436)
++|+|+|++|++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++...
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAGS 70 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEcccC
Confidence 479999999999 999999999999999999999999998 99999999877543
No 276
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.49 E-value=3.1e-08 Score=114.37 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=75.6
Q ss_pred ceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHH
Q 046196 870 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSA 949 (1436)
Q Consensus 870 vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~ 949 (1436)
+++..++|++++|+|+|||||||++..|++... +..|+|.+.+.+.... ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~-------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA-------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH-------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH-------------------HHHHH-----
Confidence 455568999999999999999999999999764 2346676655432100 00111
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH---HHHHHHhhCCCcceeeCCCCCCCHHHH
Q 046196 950 WLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1026 (1436)
Q Consensus 950 ~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl---~iA~aL~~~p~illlDEPTsgLD~~~~ 1026 (1436)
.....+.+++.. ....|+|+.+++ +|++++..+|+++++|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 122334445432 124688999999 89999999999999999974 3444
Q ss_pred HHHHHHHHHH
Q 046196 1027 AIVMRTVRNT 1036 (1436)
Q Consensus 1027 ~~i~~~l~~~ 1036 (1436)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 277
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.49 E-value=2.2e-07 Score=106.98 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=86.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQG 257 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~ 257 (1436)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 579999999999999999999999998754 45 13455555432 3355555543211
Q ss_pred CCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHH
Q 046196 258 VGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTG 337 (1436)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia 337 (1436)
.+|++.. . ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1222210 0 012 233355565
Q ss_pred HHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHh--cCCeEEEE-EecCchhHHHhcccEEEecCCeEEEe
Q 046196 338 EMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI--LNGTAVIS-LLQPAPETYELFDDLILLSDGQIVYQ 408 (1436)
Q Consensus 338 ~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~--~~~t~ii~-i~q~~~~~~~~~D~iivL~~G~iv~~ 408 (1436)
+ +.+++++|+| |+|+|+.....+.+. .+.... ...++++. .+|...++.+.+|++..+..|.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el-~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDEL-KETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHH-HHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHH-HHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 999998766544433 333211 11223332 35666778888888776777777763
No 278
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.47 E-value=1.9e-07 Score=107.58 Aligned_cols=118 Identities=19% Similarity=0.094 Sum_probs=81.5
Q ss_pred ccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHH
Q 046196 868 KGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVY 947 (1436)
Q Consensus 868 ~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~ 947 (1436)
+++++. +|++++++|+||+||||++..|++... ...|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------HH-HHH--
Confidence 677887 999999999999999999999999764 23577877765432100 00 101
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC-CCCCCHHHH
Q 046196 948 SAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1026 (1436)
Q Consensus 948 ~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP-TsgLD~~~~ 1026 (1436)
..+.+..++..+.. + .+-+..+.+|..|+.+...+++++++||| ++|+|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01122334432211 0 12344566788999988899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 046196 1027 AIVMRTVRNT 1036 (1436)
Q Consensus 1027 ~~i~~~l~~~ 1036 (1436)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887777655
No 279
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.46 E-value=1.9e-08 Score=127.82 Aligned_cols=159 Identities=18% Similarity=0.235 Sum_probs=100.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCC---------
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQND--------- 237 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~--------- 237 (1436)
..+++++++.+++|+.++|+||||+|||||+++|+|.+++. ..|.+.+++.+.+... ..++|++|..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHHH
Confidence 45889999999999999999999999999999999999875 2488999887765543 3578887643
Q ss_pred -------------CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHH
Q 046196 238 -------------LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYV 304 (1436)
Q Consensus 238 -------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1436)
+.+..+++.+|+.... +.. .+.+-.. . .. ...
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~~--------------------~~~~~v~---------~--~~---~~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDN-CGR--------------------TKAPFID---------A--TG---AHA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECC-TTC--------------------SSCCEEE---------C--TT---CCH
T ss_pred Hhhccchhhhhhcccccccccccceeecc-ccC--------------------CCCCEEE---------c--CC---CCH
Confidence 2222233333322110 000 0000000 0 00 001
Q ss_pred HHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHH
Q 046196 305 LKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQ 370 (1436)
Q Consensus 305 l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~ 370 (1436)
-+.+|.-+... ....++|+|++|++..+.....++.+|||||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 12233211111 1113699999999999999999999999999998 888887777777764
No 280
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.44 E-value=5.8e-10 Score=124.13 Aligned_cols=38 Identities=32% Similarity=0.260 Sum_probs=22.9
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHc-CCCC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 902 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~-g~~~ 902 (1436)
+..+++|+++++|++++|+||||||||||+++|+ |..+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4688999999999999999999999999999999 9864
No 281
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.44 E-value=8.6e-07 Score=98.93 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=42.3
Q ss_pred cCCceeEEeCCCCCC--ChHHHHHHHHHHHHHHHhcCCeEEEEEecCchh--------HHHhcccEEEecC
Q 046196 342 GPARALFMDEISTGL--DSSTTYQIVNSLRQSIHILNGTAVISLLQPAPE--------TYELFDDLILLSD 402 (1436)
Q Consensus 342 ~~~~illLDEptsgL--D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~--------~~~~~D~iivL~~ 402 (1436)
.+|+++++|+|++.+ |.....+++..+.+.++..+. +++.++|...+ +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGC-TSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTC-EEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCC-eEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 478999999999988 665566777777777655544 44446665544 4678899999964
No 282
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.44 E-value=1.7e-08 Score=117.40 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=67.3
Q ss_pred cccccceEEE-------------------eCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEE---CCccCCcccc
Q 046196 865 EFLKGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITI---SGYPKNQETF 922 (1436)
Q Consensus 865 ~iL~~vs~~i-------------------~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~~ 922 (1436)
++++++++.+ ++|+++||+||||||||||+++|+|.....+.+|+|.+ ||...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 3788888877 89999999999999999999999997541135799999 98775432 2
Q ss_pred cceEEEeecCCCCCCCCcHHHHHHHHHHhc
Q 046196 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLR 952 (1436)
Q Consensus 923 ~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~ 952 (1436)
++.+|++ |...+++.+|+.+++.+...++
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 3446788 7777778899999998766554
No 283
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.40 E-value=3.5e-08 Score=106.15 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHH
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1036 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~ 1036 (1436)
+...+|++++.+|+++++| ||++|..+...+.+.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999988753
No 284
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.40 E-value=2.8e-07 Score=108.60 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhC--CCcceeeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCCH-----
Q 046196 997 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1052 (1436)
Q Consensus 997 qRl~iA~aL~~~--p~illlDEPTsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1052 (1436)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|+|||+++|..+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223444555554 3459999999996431
Q ss_pred ----------HHHHhhCeEEEEecCcEEEEEcC
Q 046196 1053 ----------DIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 1053 ----------~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
.+...+|.++.+.+ ++.+-.|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 13457888888876 34443443
No 285
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.39 E-value=2.6e-10 Score=130.75 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=81.7
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---cccceEEEeecCCC-CCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---TFARISGYCEQTDI-HSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~l 939 (1436)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+.... ...+.+++++|... ..|.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 45899999999999 89999999999999999998764 57888988653211 11233556666543 45677
Q ss_pred cHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 046196 940 TVYESLVYSAWLRLPP-EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSI 1011 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~i 1011 (1436)
++.|++......+... ....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 8888885432211100 001112222222222 13789999999999999999987
No 286
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.37 E-value=6.7e-07 Score=109.62 Aligned_cols=183 Identities=17% Similarity=0.160 Sum_probs=105.2
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCH
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 345799999999999999999999999999999999876432 23 023444322 233
Q ss_pred HHHHHhh-hhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 246 RETLAFS-ARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 246 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
.+...-. +...++.. ..+ + .+...+.+.+ .+...++.++..+. .+-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~-----~~l----~-~g~l~~~~~~---------------~~~~a~~~l~~~~l---~i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA-----QNL----R-TGKLTPEDWG---------------KLTMAMGSLSNAGI---YIDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH-----HHH----H-TSCCCHHHHH---------------HHHHHHHHHHSSCE---EEEC--CT
T ss_pred HHHHHHHHHHHcCCCH-----HHH----h-cCCCCHHHHH---------------HHHHHHHHHhcCCE---EEEC--CC
Confidence 2222110 00001000 000 0 0000000111 11122333332221 1111 23
Q ss_pred cCChhhhhHHHHHHHHh--cCCceeEEeCCCCCCCh--------HHHHHHHHHHHHHHHhcCCeEEEEEec---------
Q 046196 325 GISGGQRKRLTTGEMLV--GPARALFMDEISTGLDS--------STTYQIVNSLRQSIHILNGTAVISLLQ--------- 385 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~--~~~~illLDEptsgLD~--------~t~~~i~~~l~~~~~~~~~t~ii~i~q--------- 385 (1436)
++|++|.+ +.++.+. .+|+++++|+++...+. .....+.+.|+.+++..+.++|+ ++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~~ 371 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQRQ 371 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC-
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccCC
Confidence 59999986 5566665 67999999999998743 23367778888888766555444 666
Q ss_pred ---Cc-------hhHHHhcccEEEecCCeE
Q 046196 386 ---PA-------PETYELFDDLILLSDGQI 405 (1436)
Q Consensus 386 ---~~-------~~~~~~~D~iivL~~G~i 405 (1436)
|. ..+...+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987654
No 287
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.37 E-value=2.8e-10 Score=128.51 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=82.6
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---cccceEEEeecCC-CCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---TFARISGYCEQTD-IHSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~-~~~~~l 939 (1436)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|.. ...|.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 45899999999999 89999999999999999998754 57888888653211 1123345666653 345677
Q ss_pred cHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 046196 940 TVYESLVYSAWLRLPP-EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1017 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP 1017 (1436)
++.|++......+... ....++..+.+.+++. .|||||+||+.|++++..+|++ +|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 8878774332211110 0011222222333322 3788999999999999999986 4543
No 288
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.35 E-value=1e-08 Score=130.18 Aligned_cols=161 Identities=14% Similarity=0.099 Sum_probs=99.8
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCC-------
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDI------- 934 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~------- 934 (1436)
+...+++++++.+++|+.++|+||||+|||||+++|++...+ ...|.+.+++.+... ....++++++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 345689999999999999999999999999999999998753 234888898876543 2345788876431
Q ss_pred ---------------CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 046196 935 ---------------HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRL 999 (1436)
Q Consensus 935 ---------------~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl 999 (1436)
.+..+++.+|+.....-..+...-.. . ....-+.+|........ ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCccccccccc
Confidence 11122222222100000000000000 0 00011122221111111 146999999999
Q ss_pred HHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHH
Q 046196 1000 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035 (1436)
Q Consensus 1000 ~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~ 1035 (1436)
..++....++.+|||||... |++.....+.+.|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899888888888775
No 289
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.35 E-value=5.5e-08 Score=118.27 Aligned_cols=51 Identities=20% Similarity=0.138 Sum_probs=46.8
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
.+|+|+|++|++ ++++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 479999999999 9999999999999999999999876 56899999998764
No 290
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.34 E-value=2.9e-08 Score=107.88 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=49.3
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---ccceEEEecCCCCcCCCCCHHHHHH
Q 046196 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---PQRTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 174 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999863 2445554433221 1345789999877777777766654
Q ss_pred h
Q 046196 251 F 251 (1436)
Q Consensus 251 f 251 (1436)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 4
No 291
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.33 E-value=2.8e-07 Score=106.17 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=82.1
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP 954 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~ 954 (1436)
++|++++|+|+||+||||++..|++... +.+| +.+.++.++.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 4799999999999999999999998753 1234 12445554431 2345555543221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHH
Q 046196 955 PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034 (1436)
Q Consensus 955 ~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~ 1034 (1436)
..++... ...+. ..-+.+|+ .+.+|+++++| |+|+|+.....+.++.+
T Consensus 159 -----------------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 159 -----------------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp -----------------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred -----------------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 1122110 01222 22344454 45999999999 99999877665555444
Q ss_pred HHH---hCCCEEEE-EecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 1035 NTV---DTGRTVVC-TIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 1035 ~~~---~~g~tvi~-~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
-+. ..+.++|+ ++|... ++.+.+|++-.+..+ .++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~-giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVN-QYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCC-EEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCC-EEEEe
Confidence 332 12334444 377643 566667766555554 44443
No 292
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.32 E-value=1.3e-06 Score=100.67 Aligned_cols=118 Identities=19% Similarity=0.097 Sum_probs=80.6
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHH
Q 046196 171 HDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 171 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+.... + ++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~------~------------~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP------A------------AR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH------H------------HH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH------h------------HH-HHHH
Confidence 678888 99999999999999999999999998765 78888877543210 0 00 0000
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
.+.+..|++.... +. +-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~~----~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---MD----GESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---CT----TCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---CC----CCCHHH
Confidence 0112234432110 00 122334
Q ss_pred hhHHHHHHHHhcCCceeEEeCC-CCCCChHHHHHHHHHHHHH
Q 046196 331 RKRLTTGEMLVGPARALFMDEI-STGLDSSTTYQIVNSLRQS 371 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEp-tsgLD~~t~~~i~~~l~~~ 371 (1436)
-+|.+++++...+++++++||| ++++|......+.+..+..
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5688999988889999999999 9999988877777666543
No 293
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.28 E-value=1.7e-07 Score=114.86 Aligned_cols=166 Identities=12% Similarity=0.059 Sum_probs=89.1
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhc--CcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCC--CHHH
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAG--KLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEM--TVRE 247 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~l--TV~E 247 (1436)
.+++.+..+..++|.|++||||||+|+.|.. .+..+ .|+|.+.+.+.+..... .| . .+|.+ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el~---~~--~---~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLELS---VY--E---GIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGGG---GG--T---TCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhhh---hh--c---cCCcccceeec
Confidence 3677888999999999999999999999875 22332 46666655443321100 00 0 01111 1212
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccc--ccccCccccc
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD--TMVGDEMLRG 325 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d--t~vg~~~~~~ 325 (1436)
+...+.+.. .....|+. .+ ..+++..|+.+..+ ..+ ...
T Consensus 228 d~~~a~~~L-----~~~~~Eme-----------------------------rR-~~ll~~~Gv~~i~~yn~~~----~~~ 268 (512)
T 2ius_A 228 DMKDAANAL-----RWCVNEME-----------------------------RR-YKLMSALGVRNLAGYNEKI----AEA 268 (512)
T ss_dssp SHHHHHHHH-----HHHHHHHH-----------------------------HH-HHHHHHTTCSSHHHHHHHH----HHH
T ss_pred CHHHHHHHH-----HHHHHHHH-----------------------------HH-HHHHHHcCCccHHHHHHHH----HHH
Confidence 221111100 00011111 11 23566677654322 111 124
Q ss_pred CChhhhhHH----------HHHHHHhcCCc-eeEEeCCCCCCChHHHHHHHHHHHHHHHhcC--CeEEEEEecCch
Q 046196 326 ISGGQRKRL----------TTGEMLVGPAR-ALFMDEISTGLDSSTTYQIVNSLRQSIHILN--GTAVISLLQPAP 388 (1436)
Q Consensus 326 LSGGqkqRv----------sia~al~~~~~-illLDEptsgLD~~t~~~i~~~l~~~~~~~~--~t~ii~i~q~~~ 388 (1436)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++++..+ |..++..+|...
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 899998863 24555667787 78999999988843 3455555655544322 455556667544
No 294
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.27 E-value=2.4e-07 Score=99.60 Aligned_cols=43 Identities=9% Similarity=0.140 Sum_probs=36.2
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHH
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQ 370 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~ 370 (1436)
|..-.++++.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4333345688999999999999999 999999999999988875
No 295
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.27 E-value=2.9e-09 Score=121.96 Aligned_cols=75 Identities=24% Similarity=0.340 Sum_probs=53.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCC-cCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDL-HIGEM 243 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~-~~~~l 243 (1436)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++.+... .+.+++++|... ..+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4789999999999 99999999999999999999874 6889998866432211 122445555421 34445
Q ss_pred CHHHHH
Q 046196 244 TVRETL 249 (1436)
Q Consensus 244 TV~E~l 249 (1436)
++.|++
T Consensus 136 ~~iDei 141 (278)
T 1iy2_A 136 VFIDEI 141 (278)
T ss_dssp EEEETH
T ss_pred Eehhhh
Confidence 555555
No 296
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.26 E-value=1.3e-08 Score=124.49 Aligned_cols=162 Identities=10% Similarity=0.077 Sum_probs=92.1
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcC--CCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCC--c----
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHV--T---- 940 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~l--T---- 940 (1436)
.+++.+.++..++|.|++||||||+++.|.. .... ..|++.+.+.+.+...+.. ....|++ +
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~--------~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSV--------YEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGG--------GTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhh--------hccCCcccceeecC
Confidence 3678888899999999999999999999865 2221 2244554444432211111 0011111 1
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH----------HHHHHHhhCCC
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRL----------TIAVELVANPS 1010 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl----------~iA~aL~~~p~ 1010 (1436)
+.+....-.++ .++.+++ .+.++..|+.++.+..... ...+|+||+|+. .+|+++...|.
T Consensus 229 ~~~a~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 229 MKDAANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCc
Confidence 22211111111 1222222 3678888887654321000 013577776542 35566677888
Q ss_pred -cceeeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCC
Q 046196 1011 -IIFMDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPS 1051 (1436)
Q Consensus 1011 -illlDEPTsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~ 1051 (1436)
++++||++.-+|.. ...+.+.+.++++ .|.++|+++|+|+
T Consensus 299 ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 78999999988843 3445555555543 3779999999998
No 297
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.26 E-value=4.7e-08 Score=106.17 Aligned_cols=67 Identities=22% Similarity=0.138 Sum_probs=43.6
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---cccceEEEeecCCCCCCCCcHHH
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---TFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
|+++++|++++|+||||||||||+++|+|..+ .+.+++...... ..++.++|++|+...++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 56778999999999999999999999999753 355555443221 12345678888765544444433
No 298
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.23 E-value=4.2e-09 Score=118.89 Aligned_cols=47 Identities=34% Similarity=0.526 Sum_probs=42.0
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 4799999999999 99999999999999999999874 58899988654
No 299
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.17 E-value=1.5e-06 Score=102.16 Aligned_cols=42 Identities=31% Similarity=0.339 Sum_probs=33.9
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEE-EECCc
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRV-TYNGH 219 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V-~~~G~ 219 (1436)
+=+++|+++.|.||||||||||+..+++...+. .|.| .+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E 98 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAE 98 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecc
Confidence 468999999999999999999999999887553 4555 44443
No 300
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.16 E-value=2.1e-06 Score=101.11 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=27.4
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+-+++|+++.|.||||||||||+..++....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999888886653
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.13 E-value=6.1e-07 Score=99.56 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=23.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh-cCcCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALA-GKLGK 206 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~-G~~~~ 206 (1436)
+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999999 98743
No 302
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.07 E-value=1.8e-06 Score=93.23 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHH
Q 046196 999 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037 (1436)
Q Consensus 999 l~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~ 1037 (1436)
...|++++.+|+++++| ||++|......+.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35589999999999999 99999999999998887643
No 303
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.06 E-value=1.3e-07 Score=104.19 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=40.0
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-----------ccceEEEecCC
Q 046196 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-----------PQRTSAYISQN 236 (1436)
Q Consensus 174 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----------~~~~~~yv~Q~ 236 (1436)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... ....++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 899999999999999999999999998 899999998763211 12457888773
No 304
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.03 E-value=4.4e-06 Score=98.98 Aligned_cols=160 Identities=16% Similarity=0.082 Sum_probs=86.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCC--------CCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhh
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGKD--------LKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSA 253 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~~--------~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~ 253 (1436)
.++|+|+||||||||++.|+|..... ...+|.|.++|.++. .-.+.|++.|.+...-+ ..+.++....
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~lve-~f~~tl~~~~ 256 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQIVD-AFFVTLSEAK 256 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCGGGHH-HHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHHHHH-HHHHHHHHHH
Confidence 49999999999999999999986411 024789999885431 12345555543221100 0111111110
Q ss_pred hhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhH
Q 046196 254 RCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKR 333 (1436)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR 333 (1436)
..+..-.-++ . .+++ ... .+....+..+++.+++.+..--.|+++ .--+|+|+++|
T Consensus 257 ~aD~il~VvD----~----------s~~~-~~~--------~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~ 312 (364)
T 2qtf_A 257 YSDALILVID----S----------TFSE-NLL--------IETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKK 312 (364)
T ss_dssp GSSEEEEEEE----T----------TSCH-HHH--------HHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHH
T ss_pred hCCEEEEEEE----C----------CCCc-chH--------HHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHH
Confidence 0000000000 0 0010 000 001112345677777765443344543 23478888898
Q ss_pred HHHH----HHH-hcCCceeEEeCCCCCCChHHHHHHHHHHHHHHH
Q 046196 334 LTTG----EML-VGPARALFMDEISTGLDSSTTYQIVNSLRQSIH 373 (1436)
Q Consensus 334 vsia----~al-~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~ 373 (1436)
+.++ +.+ ..++++ +|+|++|......+.+.|.+...
T Consensus 313 ~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 313 LDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8877 555 334444 89999999999999998887654
No 305
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.03 E-value=3.8e-06 Score=102.58 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCC
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1051 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1051 (1436)
+++++|-.++++....|.|||+||+ ++|.|......+.+++..+- ..+..||+++|+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44777777777777777663 34678999999975
No 306
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.02 E-value=2.3e-06 Score=101.38 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=86.0
Q ss_pred EEEEEccCCCChhHHHHhHcCCCCC---------CceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH---HHH
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRKTG---------GYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE---SLV 946 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e---~l~ 946 (1436)
.++|+|++|||||||++.|+|.... ++..|.|.++|.++ .+....|++.+.+ ...|.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCC----HHHHHHHHHHHH
Confidence 3899999999999999999996531 14578999988543 1223345544321 111211 111
Q ss_pred HHHH----hc-CC-CCCC--HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCCcce
Q 046196 947 YSAW----LR-LP-PEVD--SDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIA----VEL-VANPSIIF 1013 (1436)
Q Consensus 947 ~~~~----l~-~~-~~~~--~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA----~aL-~~~p~ill 1013 (1436)
.... +. .. .+.. ..+..+.+.++++.+++.+..--.+++. ...+|+|+++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 0000 00 00 1111 1223334567788877655432222222 234687888888887 444 333443
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHh
Q 046196 1014 MDEPTSGLDARAAAIVMRTVRNTVD 1038 (1436)
Q Consensus 1014 lDEPTsgLD~~~~~~i~~~l~~~~~ 1038 (1436)
+|+|++|......+.+.|.+...
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999987653
No 307
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.96 E-value=6.1e-08 Score=114.97 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=80.5
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCC-CCCCCcHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDI-HSPHVTVY 942 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~-~~~~lTv~ 942 (1436)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+...+.+.. .+...+|+++|... ++.+.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~~--~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPLD--RLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCTT--THHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccch--hHHHHHHHhcchhHHHHHHHHHH
Confidence 35899999999999999999999999999999999753 466654221211 11223556666543 22333322
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHH---cCCcc-cc---cccc--c--CCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMEL---VELNP-IR---EALV--G--LPGVSGLSTEQRKRLTIAVELVANPSI 1011 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~---l~l~~-~~---~~~~--g--~~~~~~LSgGqrqRl~iA~aL~~~p~i 1011 (1436)
..+. .+.... ........+...++- +.+.. .. +.+. | ......+++|+++|+..+.+++.+|++
T Consensus 229 ~~~~----r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGES----RDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTTT----TTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHHH----hhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 1110 000000 000000112222320 00110 00 1000 0 001345899999999998888899998
Q ss_pred ce-eeCCCC
Q 046196 1012 IF-MDEPTS 1019 (1436)
Q Consensus 1012 ll-lDEPTs 1019 (1436)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 76 999997
No 308
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.95 E-value=1.6e-06 Score=101.83 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=35.2
Q ss_pred ccccce--EEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEE-EEECCcc
Q 046196 866 FLKGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGS-ITISGYP 916 (1436)
Q Consensus 866 iL~~vs--~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~-i~i~g~~ 916 (1436)
-|+.+- +-+++|+++.|.||+|+|||||+..+++... ...|. +++++..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEeccc
Confidence 355543 4799999999999999999999999987532 11233 4565543
No 309
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.95 E-value=5.5e-07 Score=97.64 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=49.8
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCCHHHHHHh
Q 046196 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMTVRETLAF 251 (1436)
Q Consensus 174 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~E~l~f 251 (1436)
....++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|+....+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3556789999999999999999999999975 78899987764321 11245778887655555666666654
Q ss_pred h
Q 046196 252 S 252 (1436)
Q Consensus 252 ~ 252 (1436)
.
T Consensus 96 ~ 96 (200)
T 4eun_A 96 A 96 (200)
T ss_dssp H
T ss_pred H
Confidence 3
No 310
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.91 E-value=2.7e-07 Score=101.75 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=39.3
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-----------ccccceEEEeecC
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-----------ETFARISGYCEQT 932 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~q~ 932 (1436)
++++.+ ++++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 8999999999999999999999876 458999999976521 1123557888874
No 311
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.88 E-value=7.8e-06 Score=88.14 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHH
Q 046196 333 RLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSI 372 (1436)
Q Consensus 333 Rvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~ 372 (1436)
....|++++.+|+++++| ||++|......+++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999 99999999999998887643
No 312
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.85 E-value=8.1e-07 Score=96.30 Aligned_cols=56 Identities=23% Similarity=0.165 Sum_probs=37.7
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCccc--ccceEEEeecC
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET--FARISGYCEQT 932 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~--~~~~~gyv~q~ 932 (1436)
....++|++++|+|+||||||||+++|++.. |.+.++|.+..... .+...|+++|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 3556799999999999999999999999753 77888887653211 11234566654
No 313
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.82 E-value=8.1e-06 Score=95.16 Aligned_cols=129 Identities=12% Similarity=0.139 Sum_probs=82.7
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHH
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
.-|+.+.+-++||+++.|.|++|+|||||+.-++.... . .| ..+.|+.- .++..+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g---------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD---------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT---------CEEEEEES------SSCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEeC------CCCHHHH
Confidence 35777878899999999999999999999988875321 0 11 11334321 2333332
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
.. +.......+.+.++++ ..||.++.+|+..|...+.++++.+.|+|...+
T Consensus 90 ~~------------------Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si--- 140 (338)
T 4a1f_A 90 AL------------------RALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI--- 140 (338)
T ss_dssp HH------------------HHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH---
T ss_pred HH------------------HHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH---
Confidence 21 1111111222222222 149999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHhC--CCEEEEEec
Q 046196 1025 AAAIVMRTVRNTVDT--GRTVVCTIH 1048 (1436)
Q Consensus 1025 ~~~~i~~~l~~~~~~--g~tvi~~~H 1048 (1436)
..+...++++.++ |..+|++=|
T Consensus 141 --~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 --EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEec
Confidence 3555666666543 577777744
No 314
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.79 E-value=3.6e-05 Score=93.95 Aligned_cols=34 Identities=35% Similarity=0.593 Sum_probs=29.8
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++++++.+++| ++|.||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 577788878777 8899999999999999999864
No 315
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.76 E-value=9.8e-06 Score=86.08 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=33.1
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 171 HDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 171 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 7889999999 99999999999999999999987654
No 316
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.74 E-value=6.1e-06 Score=95.97 Aligned_cols=81 Identities=12% Similarity=0.007 Sum_probs=61.1
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---------c---cceEEEe-cC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---------P---QRTSAYI-SQ 235 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~---~~~~~yv-~Q 235 (1436)
+++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998775 789999877653211 0 3457888 67
Q ss_pred CCCcCCCCCHHHHHHhh
Q 046196 236 NDLHIGEMTVRETLAFS 252 (1436)
Q Consensus 236 ~~~~~~~lTV~E~l~f~ 252 (1436)
.....+..++.+++...
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65545555667776554
No 317
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.74 E-value=3.5e-05 Score=89.78 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=34.3
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
...-|+.+.+-++||+++.|.|+||+|||||+..++...
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345688888889999999999999999999999988764
No 318
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.72 E-value=9e-06 Score=88.05 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=28.1
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
++++|++++|+|||||||||++++|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998654
No 319
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.70 E-value=1.2e-05 Score=104.53 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCCHHHHHhhCeEEEE
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~D~v~~l 1064 (1436)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|+++ ||++. .+.+.+++.-++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 3479999999999999999999999999996 999887777777666554445677775 88764 566677654333
No 320
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.66 E-value=1.8e-06 Score=97.16 Aligned_cols=75 Identities=17% Similarity=0.076 Sum_probs=52.0
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh---cCcCCCCCcceEEE--------ECCccCCCcc----ccceEEEe
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALA---GKLGKDLKFSGRVT--------YNGHGMEEFV----PQRTSAYI 233 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~--------~~G~~~~~~~----~~~~~~yv 233 (1436)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++.+.. ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 455544 789999999999999999999999 888777 89998 8888774321 12457777
Q ss_pred cCCC-----CcCCCCCHHHHH
Q 046196 234 SQND-----LHIGEMTVRETL 249 (1436)
Q Consensus 234 ~Q~~-----~~~~~lTV~E~l 249 (1436)
+|.+ ..++..+|.+++
T Consensus 93 ~~~~~~~~~~~l~~~~v~~~i 113 (252)
T 4e22_A 93 FVSQNGQLQVILEGEDVSNEI 113 (252)
T ss_dssp EEEETTEEEEEETTEECTTGG
T ss_pred EecCCCCceEEECCeehhHHH
Confidence 7643 233444555554
No 321
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.64 E-value=1.2e-05 Score=86.01 Aligned_cols=27 Identities=33% Similarity=0.527 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
|++++|+||||||||||+++|+|.+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999999864
No 322
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=1.6e-05 Score=86.01 Aligned_cols=39 Identities=28% Similarity=0.094 Sum_probs=25.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
..+++|||+.+++|+.++|+|+|||||||+.+.|++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 458999999999999999999999999999999998763
No 323
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.63 E-value=6.4e-05 Score=89.00 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceee-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCC
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 1051 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1051 (1436)
..+|++|+|++. +.+...++-++++| +|++|+|......+.+.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 357999998876 55555677788999 99999999988888887776543 67888888 7653
No 324
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.63 E-value=1.6e-06 Score=106.47 Aligned_cols=49 Identities=35% Similarity=0.516 Sum_probs=42.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE 223 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 223 (1436)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 3689999999999 99999999999999999999864 5789999876643
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.58 E-value=4.5e-06 Score=90.34 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=43.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEE--EECCccCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRV--TYNGHGME 222 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V--~~~G~~~~ 222 (1436)
.+..++++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 446677888889999999999999999999999999986 3 5777 78876543
No 326
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.57 E-value=5.9e-06 Score=92.56 Aligned_cols=40 Identities=38% Similarity=0.436 Sum_probs=36.5
Q ss_pred cceeeecceEEEeC---CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 166 PLTILHDVSGIIKP---QRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
..++|+|+|+.|++ |+.++|+|++||||||+.++|++.+.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34699999999999 99999999999999999999999764
No 327
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.57 E-value=6.8e-06 Score=92.07 Aligned_cols=52 Identities=25% Similarity=0.419 Sum_probs=35.5
Q ss_pred eeEEecc-cceeecchhhhccCCCCccccccccceEEEeC---CeEEEEEccCCCChhHHHHhHcCCC
Q 046196 838 SITFDDI-RYALDMPQEMKAQGIPDDRLEFLKGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 838 ~i~~~~~-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++++|+ ++.++ +...+|+|+|+.+++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4778888 76541 234699999999999 9999999999999999999999754
No 328
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.52 E-value=2.7e-05 Score=82.59 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=30.8
Q ss_pred ccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 868 KGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 868 ~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
+++++.+.+| +++|+||||||||||+++|.+...
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 6789999999 999999999999999999987543
No 329
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.51 E-value=9.8e-07 Score=108.34 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=80.9
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCccc---ccceEEEeecCCC-CCCCCc
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET---FARISGYCEQTDI-HSPHVT 940 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~---~~~~~gyv~q~~~-~~~~lT 940 (1436)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+..... ..+.+..++|... ..|.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 4789999999999 89999999999999999998753 567888886643211 1122344555432 345556
Q ss_pred HHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 046196 941 VYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1019 (1436)
Q Consensus 941 v~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTs 1019 (1436)
+.|++......+.. .....++..+.+.+++. .+||||+|+..|+++...+|++ |||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 66655322111110 00112233333344433 2677778888888888888877 788764
No 330
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.50 E-value=3e-05 Score=83.88 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.5
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
++++|++++|+||||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999864
No 331
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.49 E-value=7.4e-05 Score=97.14 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=55.7
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCC-CCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEIST-GLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++.+++...+.+++++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTS
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcC
Confidence 3489999999999999999999999999996 9998877777766655321 1234555567787777777775
No 332
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.48 E-value=2.8e-05 Score=99.49 Aligned_cols=132 Identities=15% Similarity=0.113 Sum_probs=71.7
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCCCCCCCcHHHHHHH
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHVTVYESLVY 947 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~ 947 (1436)
|+.+++|..++|+|++|+|||||++.|++........|+| .+|..... ...++.+++..|...+... +
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~------- 73 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-G------- 73 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-T-------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-C-------
Confidence 3467889999999999999999999999643321235666 45543321 1112223333332211110 0
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHH
Q 046196 948 SAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027 (1436)
Q Consensus 948 ~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~ 1027 (1436)
....++..|+...++ .......-..+..++++| |+.|+|+.+..
T Consensus 74 ------------------------------~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 74 ------------------------------HRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ------------------------------EEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ------------------------------EEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 111111112111221 112222235677888999 99999988774
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1028 IVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1028 ~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
.+ +.+.+.+..+|+++|..+
T Consensus 118 ~~----~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 118 AW----TVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp HH----HHHHHTTCCEEEEEECGG
T ss_pred HH----HHHHHccCCEEEEecCCc
Confidence 33 333335788888898755
No 333
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=3.8e-05 Score=81.60 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=30.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEEC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYN 217 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~ 217 (1436)
.+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987542 35665543
No 334
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.45 E-value=2.1e-05 Score=91.38 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=41.5
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
+++++++.+++|++++|+|+||+||||++..|++... +..|+|.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 3478999999999999999999999999999999764 3457888877664
No 335
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.43 E-value=3.2e-05 Score=83.92 Aligned_cols=71 Identities=7% Similarity=0.041 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH-HHHhhCeEEEEec
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFDAFDELLLMKR 1066 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~D~v~~l~~ 1066 (1436)
+.|+.+|..++..+..+|+.+..+ ++.++|.....+.+.++.. .+.+||+.+|..... ....+|.+++++-
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 678889999999888888765444 3355666666655555432 356888888865321 2456888888863
No 336
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.39 E-value=1.6e-05 Score=89.46 Aligned_cols=57 Identities=25% Similarity=0.165 Sum_probs=45.0
Q ss_pred eCCeEEEEEccCCCChhHHHHhHc---CCCCCCceeEEEE--------ECCccCCc----ccccceEEEeecCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYVSGSIT--------ISGYPKNQ----ETFARISGYCEQTD 933 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~q~~ 933 (1436)
++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 8765 5689888 88876632 23445678887653
No 337
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.39 E-value=1.9e-05 Score=93.68 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1048 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1048 (1436)
-+..++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| .+|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764333445443 44566667665555 57777766
No 338
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.38 E-value=6.2e-05 Score=81.27 Aligned_cols=38 Identities=29% Similarity=0.106 Sum_probs=24.4
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
...++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35899999999999999999999999999999999654
No 339
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.36 E-value=2.8e-05 Score=83.00 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.9
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
|++++|+||||||||||+++|+|..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999764
No 340
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.34 E-value=1.2e-05 Score=86.90 Aligned_cols=50 Identities=24% Similarity=0.251 Sum_probs=40.4
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEE--EECCccC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSI--TISGYPK 917 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i--~i~g~~~ 917 (1436)
...+.++...++|++++|+||||||||||++.|++... ..|.+ .++|.++
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 45667777789999999999999999999999998753 24665 7877543
No 341
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.32 E-value=1.8e-05 Score=93.95 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=31.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhc--CcCCCCCcceEEE
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAG--KLGKDLKFSGRVT 215 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~~~~G~V~ 215 (1436)
..+|+++++.++ .++|+|++|||||||+++|.| ++++. +|.++
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~---~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG---SGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC---SSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC---CCccc
Confidence 358999999998 899999999999999999999 44544 55544
No 342
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.31 E-value=5e-05 Score=84.06 Aligned_cols=42 Identities=19% Similarity=0.062 Sum_probs=35.6
Q ss_pred ceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 173 VSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 173 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
-++..++|++++|.|++|||||||+++|+|. .|+|.+.+++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445679999999999999999999999997 47888887654
No 343
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.30 E-value=4.3e-05 Score=84.63 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=35.1
Q ss_pred ceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 870 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 870 vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
-++..++|++++|.|+||||||||+++|+|. .|+|.+++.|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3445579999999999999999999999986 36788888764
No 344
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.27 E-value=4.7e-05 Score=90.24 Aligned_cols=44 Identities=34% Similarity=0.336 Sum_probs=39.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTY 216 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 216 (1436)
..+|+++|+.+++|++++|+||||||||||+++|+|.. +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 35899999999999999999999999999999999964 577765
No 345
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.26 E-value=0.00022 Score=82.20 Aligned_cols=153 Identities=17% Similarity=0.213 Sum_probs=79.3
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~ 953 (1436)
+++| .++|+|++|+|||||++.|.|.... + ..+.+. .+..+..|++.+++..+ ++.| .
T Consensus 6 ~r~~-~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~~--tTr~~~~gi~~~~~~~i---~~iD---------T 63 (301)
T 1ega_A 6 SYCG-FIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKAQ--TTRHRIVGIHTEGAYQA---IYVD---------T 63 (301)
T ss_dssp CEEE-EEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCSS--CCSSCEEEEEEETTEEE---EEES---------S
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCCC--cceeeEEEEEEECCeeE---EEEE---------C
Confidence 3444 7999999999999999999986420 1 112221 12234567777654311 1111 0
Q ss_pred CCCCCHHHHHHHHHHHH-----HHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCcceeeCCCCCCCHHH-
Q 046196 954 PPEVDSDTRKMFVEEVM-----ELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA- 1025 (1436)
Q Consensus 954 ~~~~~~~~~~~~v~~vl-----~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~--~~p~illlDEPTsgLD~~~- 1025 (1436)
|. ...+.. ....+-+ ..+.-.+..-..+. ... +|.|++ .+++.+. ..|.++++ +.+|...
T Consensus 64 pG-~~~~~~-~~l~~~~~~~~~~~l~~~D~vl~Vvd--~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~ 131 (301)
T 1ega_A 64 PG-LHMEEK-RAINRLMNKAASSSIGDVELVIFVVE--GTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQE 131 (301)
T ss_dssp SS-CCHHHH-HHHHHHHTCCTTSCCCCEEEEEEEEE--TTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCC
T ss_pred cC-CCccch-hhHHHHHHHHHHHHHhcCCEEEEEEe--CCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCcc
Confidence 11 110000 0011111 11111111111111 123 899987 4566666 67889988 8899876
Q ss_pred HHHHHHHHHHHHhC-CC--EEEEEecCCCHHHHHhhCeE
Q 046196 1026 AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 1026 ~~~i~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~D~v 1061 (1436)
...+.+.++++.+. |. .+.+++|+-. .+-+++|.+
T Consensus 132 ~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 132 KADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 66777888877653 43 4555666533 344444443
No 346
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.24 E-value=0.00037 Score=82.98 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.2
Q ss_pred hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCC
Q 046196 1007 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1051 (1436)
Q Consensus 1007 ~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1051 (1436)
.+|.+|++||+... |......+.+.+.+... .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888887766554 5788999999874
No 347
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.21 E-value=0.00064 Score=78.92 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=33.5
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
..+-|+++.+-+++|+++.|.|+||+|||||+..++..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34568888888999999999999999999999988754
No 348
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.20 E-value=0.00015 Score=78.81 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=27.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999999875
No 349
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.20 E-value=0.00063 Score=79.96 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=28.9
Q ss_pred cccce-EEEeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 867 LKGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 867 L~~vs-~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
|+.+- +-+++|+++.|.||+|+|||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 57999999999999999999999988863
No 350
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.20 E-value=8.5e-05 Score=80.33 Aligned_cols=41 Identities=24% Similarity=0.114 Sum_probs=34.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 220 (1436)
.++|++++|+|+||||||||++.|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 5688999999999999999999999998765 6778776544
No 351
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.17 E-value=0.00024 Score=82.43 Aligned_cols=132 Identities=12% Similarity=0.145 Sum_probs=81.4
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
..-|+++.+-+++|+++.|.|++|+|||||+..++.... . +| ..+.|+.- .++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~------~g---------~~vl~~sl------E~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---D------ND---------DVVNLHSL------EMGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---T------TT---------CEEEEEES------SSCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEEC------CCCHHH
Confidence 346888888899999999999999999999888874211 0 11 12334332 133333
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
...- .......+.+.++.+ | ...||.++++|+..|...+.++++.+.|+|...
T Consensus 111 l~~R------------------~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--- 163 (315)
T 3bh0_A 111 NIKR------------------LIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--- 163 (315)
T ss_dssp HHHH------------------HHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB---
T ss_pred HHHH------------------HHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 2211 111111111111111 0 012889999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHhC-CCE--EEEEec
Q 046196 1024 RAAAIVMRTVRNTVDT-GRT--VVCTIH 1048 (1436)
Q Consensus 1024 ~~~~~i~~~l~~~~~~-g~t--vi~~~H 1048 (1436)
...+...++++.++ |.. +|++-|
T Consensus 164 --~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 --VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp --HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34455666666544 666 777765
No 352
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.17 E-value=0.00012 Score=77.56 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=29.8
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEEC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITIS 913 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~ 913 (1436)
.+|++++|+||||||||||++.|++..++ ...|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeecc
Confidence 37899999999999999999999987542 245555443
No 353
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.15 E-value=0.00015 Score=77.95 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=26.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999999865
No 354
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.15 E-value=0.00014 Score=76.48 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=31.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
.+|++++|+|||||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 468999999999999999999999874 6677777543
No 355
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.14 E-value=0.00093 Score=78.98 Aligned_cols=57 Identities=5% Similarity=0.108 Sum_probs=42.1
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEe-CCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEE
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMD-EISTGLDSSTTYQIVNSLRQSIHILNGTAVISL 383 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLD-EptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i 383 (1436)
..+|+||+|++. +.+...++-++++| ++.+|+|......+++.+.+... +.+++++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 358999998876 55555777889999 99999999988888877776432 44555543
No 356
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.12 E-value=0.00082 Score=72.64 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=35.8
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH--HHhcccEEEec
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPET--YELFDDLILLS 401 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~--~~~~D~iivL~ 401 (1436)
.+.|+.+|..+++.+..+|+.+.++ .+.+++.....+.+.+++ ..++ .++.-.+...+. ...+|.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~---~~~~-~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAE---QTAP-YTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHT---CCSS-EEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHh---cCCC-EEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678999999999998888655443 234555555555444432 1233 344333433333 56677776663
No 357
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.12 E-value=0.00085 Score=78.20 Aligned_cols=145 Identities=21% Similarity=0.205 Sum_probs=77.9
Q ss_pred ccccce-EEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHH
Q 046196 866 FLKGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 866 iL~~vs-~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
-|+.+- +-+++|+++.|.||+|+|||||...++.........| |. ...+.|+.-+..+ ....-
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~-------~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL-------SGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC-------SCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC-------CCeEEEEECCCCC----CHHHH
Confidence 345443 6799999999999999999999998875321000000 00 0123344322211 11111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH-HHHHHHHHHHHh---hCCCcceeeCCCCC
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSG 1020 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG-qrqRl~iA~aL~---~~p~illlDEPTsg 1020 (1436)
......+ ..+. +++++.+ .+. +..+.. +.+.+..++.++ .+|+++++|+.++-
T Consensus 159 ~~~~~~~----g~~~-------~~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 159 ENMAKAL----GLDI-------DNVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHT----TCCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHh----CCCH-------HHHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 1111111 1111 1222211 111 113443 346677788887 57999999999986
Q ss_pred CCH--------HH----HHHHHHHHHHHHh-CCCEEEEEecC
Q 046196 1021 LDA--------RA----AAIVMRTVRNTVD-TGRTVVCTIHQ 1049 (1436)
Q Consensus 1021 LD~--------~~----~~~i~~~l~~~~~-~g~tvi~~~H~ 1049 (1436)
.+. .. ...+++.|+++++ .|++||++.|-
T Consensus 216 ~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 216 FRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 532 11 2445555666554 38999999884
No 358
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.04 E-value=0.00033 Score=75.87 Aligned_cols=30 Identities=30% Similarity=0.189 Sum_probs=27.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
-.+++|++++|+|+|||||||+.+.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999976
No 359
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.04 E-value=0.0017 Score=74.31 Aligned_cols=70 Identities=24% Similarity=0.271 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCC---HHH
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1054 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~ 1054 (1436)
+++++.|..++.+...+|.+||+||+.+-++.. ....+...+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777788888899999999998776532 22233344433221 2356788888753 233
Q ss_pred HHhhCeE
Q 046196 1055 FDAFDEL 1061 (1436)
Q Consensus 1055 ~~~~D~v 1061 (1436)
...|++.
T Consensus 177 ~~R~~~~ 183 (297)
T 3b9p_A 177 LRRFTKR 183 (297)
T ss_dssp HHHCCEE
T ss_pred HhhCCeE
Confidence 3445543
No 360
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.02 E-value=0.00011 Score=93.87 Aligned_cols=49 Identities=35% Similarity=0.348 Sum_probs=35.2
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc
Q 046196 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF 224 (1436)
Q Consensus 174 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~ 224 (1436)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+.+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~ 51 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDY 51 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccC
Confidence 3457889999999999999999999999765431 226777 566554443
No 361
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.97 E-value=0.00027 Score=76.77 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.1
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998865
No 362
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.93 E-value=0.00011 Score=85.04 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=29.4
Q ss_pred eeecceEEEeCCe------EEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 169 ILHDVSGIIKPQR------LTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 169 iL~~vs~~i~~G~------~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
.|++++..+..++ +++|+||||||||||+++|++.+..
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3444444444443 8999999999999999999999863
No 363
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.92 E-value=0.00019 Score=89.20 Aligned_cols=43 Identities=30% Similarity=0.309 Sum_probs=37.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce-EEE-ECCcc
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSG-RVT-YNGHG 220 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~-~~G~~ 220 (1436)
..+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 357899999999999999999999999999876 55 675 78754
No 364
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.90 E-value=0.0015 Score=79.64 Aligned_cols=171 Identities=16% Similarity=0.183 Sum_probs=94.2
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHH
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
.-|+.+.+-+++|+++.|.|++|+|||||..-++..... ..| . .+.|+.- .++..+-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g------~---------~vl~~sl------E~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL--KEG------V---------GVGIYSL------EMPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTC------C---------CEEEEES------SSCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCC------C---------eEEEEEC------CCCHHHH
Confidence 357777778999999999999999999999888753210 011 0 1222211 1222221
Q ss_pred HHH--HHHhcCCC------CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCccee
Q 046196 945 LVY--SAWLRLPP------EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFM 1014 (1436)
Q Consensus 945 l~~--~~~l~~~~------~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~--~~p~illl 1014 (1436)
..- +.....+. ..+.++. ..+.+.++.+.-.++. +-. ..++|..+- .+.++.+. .+|+++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 110 11111110 1222222 2233333333222211 111 125777765 34556665 47999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecC-----------CCH-------HHHHhhCeEEEEe
Q 046196 1015 DEPTSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIHQ-----------PSI-------DIFDAFDELLLMK 1065 (1436)
Q Consensus 1015 DEPTsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H~-----------~~~-------~~~~~~D~v~~l~ 1065 (1436)
|..+.-.+. .....+.+.|+.++++ +++||+++|- |.. .+...+|.|+.|.
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 998764332 1234677778887765 8999999983 210 2345688888886
Q ss_pred c
Q 046196 1066 R 1066 (1436)
Q Consensus 1066 ~ 1066 (1436)
+
T Consensus 397 r 397 (444)
T 2q6t_A 397 R 397 (444)
T ss_dssp E
T ss_pred c
Confidence 4
No 365
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.89 E-value=0.0048 Score=70.61 Aligned_cols=27 Identities=44% Similarity=0.666 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++.-++|.||||+|||||++++++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999865
No 366
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.88 E-value=8e-05 Score=86.21 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=34.0
Q ss_pred cccccccceEEEeCCe------EEEEEccCCCChhHHHHhHcCCCC
Q 046196 863 RLEFLKGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge------~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
..+.|++++..+..++ ++||+||||||||||+++|.+...
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457888888887776 999999999999999999998654
No 367
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.87 E-value=0.00022 Score=74.94 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=29.8
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
.+|++++|+|+|||||||+++.|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 478999999999999999999998753 556777644
No 368
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.84 E-value=0.005 Score=73.09 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=25.2
Q ss_pred CCe--EEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 179 PQR--LTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 179 ~G~--~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
++. .++|.||+|+|||||++.+++.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 445 89999999999999999999987653
No 369
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.84 E-value=0.00058 Score=73.94 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=26.6
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.+++|++++|+|++|||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999999999865
No 370
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.82 E-value=0.0044 Score=71.28 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=40.2
Q ss_pred CChhhhhHHHHHHHHh--cCCceeEEeCCCCCCChHH-HHHHHHHHHHHHHhcCC-eEEEEEecCchhHHHhcccE
Q 046196 326 ISGGQRKRLTTGEMLV--GPARALFMDEISTGLDSST-TYQIVNSLRQSIHILNG-TAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 326 LSGGqkqRvsia~al~--~~~~illLDEptsgLD~~t-~~~i~~~l~~~~~~~~~-t~ii~i~q~~~~~~~~~D~i 397 (1436)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++....+. .++.+..+....+.+++|.|
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 888886 5566666 78889998 7899876 56677777776543332 23332233344444455543
No 371
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.81 E-value=0.00061 Score=69.94 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=24.5
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 202 (1436)
+.++.+.+| +++|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555555 999999999999999999974
No 372
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.80 E-value=0.00041 Score=72.60 Aligned_cols=27 Identities=37% Similarity=0.547 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.|++++|+|||||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
No 373
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.80 E-value=0.00056 Score=70.22 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=24.1
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHc
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~ 898 (1436)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344556665 89999999999999999986
No 374
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.79 E-value=0.00021 Score=77.17 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=31.9
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
..++|++++|+|+||||||||++.|++... +..|.|.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEecc
Confidence 357899999999999999999999998653 22456655443
No 375
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.73 E-value=0.00061 Score=82.89 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=47.6
Q ss_pred hCCCcceeeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEE-EecCcEEEEEcCCC
Q 046196 1007 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLL-MKRGGEEIYVGPLG 1077 (1436)
Q Consensus 1007 ~~p~illlDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~-l~~Gg~~~y~G~~~ 1077 (1436)
.+|++||+||+..-.+. .+...+...+..+.+.|+.||+++|.+..++....+++.- +. .|.++..+|+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887764 6777888888888778899999999864322111122211 22 35666667664
No 376
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.68 E-value=0.00022 Score=83.78 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=41.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH 219 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~ 219 (1436)
.+++++++.+++|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~ 92 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAV 92 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEee
Confidence 4778888889999999999999999999999999988664 566665443
No 377
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.68 E-value=0.0041 Score=72.34 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=30.2
Q ss_pred eeecce-EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 169 ILHDVS-GIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 169 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
-|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 455543 679999999999999999999999998753
No 378
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.64 E-value=0.0031 Score=75.83 Aligned_cols=37 Identities=30% Similarity=0.186 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG 218 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 218 (1436)
++.+++++||+||||||++..|++.+.+. .++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 68999999999999999999999988664 56665543
No 379
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.63 E-value=0.0019 Score=77.71 Aligned_cols=27 Identities=37% Similarity=0.367 Sum_probs=24.1
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
++.+++++|++|+||||++..|++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999997543
No 380
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.63 E-value=0.00055 Score=73.50 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=25.3
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
.+|++++|+||||||||||++.|++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999998653
No 381
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.59 E-value=0.00036 Score=82.77 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.9
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999754
No 382
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.59 E-value=0.00058 Score=80.40 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=34.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
+++..++|+|+||||||||++.|+|.+.+. +|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecC
Confidence 467899999999999999999999987765 67887766543
No 383
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.56 E-value=0.0014 Score=75.37 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.3
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+.++++.-+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788899999999999999999999754
No 384
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.52 E-value=0.0087 Score=70.15 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=29.9
Q ss_pred eeecce-EEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 169 ILHDVS-GIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 169 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 57999999999999999999999999875
No 385
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.51 E-value=0.00036 Score=86.75 Aligned_cols=42 Identities=38% Similarity=0.540 Sum_probs=34.2
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeE-EEE-ECCcc
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSG-SIT-ISGYP 916 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~-i~g~~ 916 (1436)
.+++|++++|+|+||||||||+++|+|+..+ ..| ++. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 4789999999999999999999999998652 344 574 77753
No 386
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.48 E-value=0.0014 Score=85.49 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=28.0
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
+.+++|+.++|+||||+|||||+++|++...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4578999999999999999999999998753
No 387
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.46 E-value=0.00064 Score=82.65 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=39.0
Q ss_pred cCCceeEEeCCCCCCCh-HHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE-ecCCeEEEecCh
Q 046196 342 GPARALFMDEISTGLDS-STTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL-LSDGQIVYQGPR 411 (1436)
Q Consensus 342 ~~~~illLDEptsgLD~-~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv-L~~G~iv~~G~~ 411 (1436)
.++++|++||+..-.+. .+...++..+..+.. .+..+|++.+.+..++..+.+++.- +..|.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 37899999999887765 566777788776543 3445555433333332222222222 344555555444
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.44 E-value=0.0007 Score=71.43 Aligned_cols=39 Identities=31% Similarity=0.303 Sum_probs=31.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce--EEEECCcc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSG--RVTYNGHG 220 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~ 220 (1436)
++|++++|+|++||||||+.+.|++.+.+ .| .|.++|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChH
Confidence 47999999999999999999999998744 24 56666543
No 389
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.42 E-value=0.0011 Score=73.08 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=27.8
Q ss_pred eeecceEEEe---CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 169 ILHDVSGIIK---PQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 169 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
-|.++|+.+. +|.+++|.|++||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3778888776 9999999999999999999999998753
No 390
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.38 E-value=0.00097 Score=69.71 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
.|++++|+|+||||||||+++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998653
No 391
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.34 E-value=0.003 Score=66.05 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.4
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999864
No 392
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.31 E-value=0.00074 Score=84.34 Aligned_cols=47 Identities=28% Similarity=0.497 Sum_probs=39.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG 218 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 218 (1436)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 3567777777 89999999999999999999999998765 67776655
No 393
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.30 E-value=0.00074 Score=73.43 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=35.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce--EEEECCcc
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSG--RVTYNGHG 220 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~ 220 (1436)
.+++|.+++|+|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 35689999999999999999999999988754 57 77777643
No 394
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.30 E-value=0.00055 Score=81.00 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=28.6
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 345788998877 999999999999999998864
No 395
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.26 E-value=0.00082 Score=78.43 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=30.5
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
|+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999874
No 396
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.25 E-value=0.00043 Score=81.26 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=34.9
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
..+++++++.+++|.+++|+|++|||||||++.|++..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999864
No 397
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.25 E-value=0.0036 Score=65.47 Aligned_cols=27 Identities=37% Similarity=0.569 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999874
No 398
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.17 E-value=0.011 Score=67.74 Aligned_cols=29 Identities=41% Similarity=0.505 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
|...+++.||||+||||+.++|++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 45689999999999999999999987553
No 399
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.17 E-value=0.0016 Score=77.09 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
++++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45779999999999999999999987643
No 400
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.16 E-value=0.0015 Score=76.19 Aligned_cols=50 Identities=24% Similarity=0.402 Sum_probs=41.2
Q ss_pred hhhcccCCCCCcceeee--------------cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 155 NYLHVLPSRKKPLTILH--------------DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 155 ~~~~~~~~~~~~~~iL~--------------~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.+.++.+.+...+..|+ |+++.+.+|+.++|+||+|+|||||++.|++.+
T Consensus 135 ~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 135 LFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34444555555556788 899999999999999999999999999999875
No 401
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.14 E-value=0.016 Score=64.01 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5799999999999999999997554
No 402
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.12 E-value=0.0034 Score=66.77 Aligned_cols=34 Identities=35% Similarity=0.374 Sum_probs=21.0
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
+++++|+..++. .++|+|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 789999998887 5689999999999999999974
No 403
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.11 E-value=0.0041 Score=75.61 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC----C-----CCcceEEEECCccC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGK----D-----LKFSGRVTYNGHGM 221 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~----~-----~~~~G~V~~~G~~~ 221 (1436)
-.++|+|+||+|||||++.|+|.... . ...+|.+.++|+++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 47999999999999999999998531 0 02378999999754
No 404
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.08 E-value=0.0016 Score=69.86 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=30.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47889998888885 689999999999999999874
No 405
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.08 E-value=0.003 Score=68.33 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=24.5
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
+.++.+.+ .+++|+|||||||||++.+|.-.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555 49999999999999999998643
No 406
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.08 E-value=0.0026 Score=68.75 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=23.9
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHc
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~ 898 (1436)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 345556665 99999999999999999885
No 407
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.06 E-value=0.0041 Score=75.61 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=30.3
Q ss_pred EEEEEccCCCChhHHHHhHcCCCC------C----CceeEEEEECCcc
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRKT------G----GYVSGSITISGYP 916 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~~------~----~~~~G~i~i~g~~ 916 (1436)
.++|+|+||+|||||++.|+|... + .+..|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999642 1 1356889898865
No 408
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.02 E-value=0.0042 Score=66.03 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=21.0
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999998887 6789999999999999999874
No 409
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.02 E-value=0.0062 Score=73.93 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=30.4
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.-|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 35777777899999999999999999999887764
No 410
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.94 E-value=0.0032 Score=66.78 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=26.5
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999876
No 411
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.93 E-value=0.0026 Score=69.60 Aligned_cols=37 Identities=32% Similarity=0.331 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTY 216 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 216 (1436)
+..++|+|||||||||+.+.|++.+.-....+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999876321111566655
No 412
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.92 E-value=0.0026 Score=68.18 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=31.1
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+++++|+..+++. ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 48899999888884 789999999999999999874
No 413
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.89 E-value=0.0032 Score=66.23 Aligned_cols=40 Identities=28% Similarity=0.196 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 220 (1436)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999999865432224777776654
No 414
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.89 E-value=0.0027 Score=68.56 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=26.1
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45889999999999999999999988763
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.88 E-value=0.0032 Score=69.46 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=26.5
Q ss_pred cccceEEEe---CCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 867 LKGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 867 L~~vs~~i~---~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
|.++++++. +|.+++|.|++||||||+++.|+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 667777776 999999999999999999999998654
No 416
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.88 E-value=0.0016 Score=76.71 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=31.1
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
+++.+++|+|++|||||||++.|+|... +..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeec
Confidence 4678999999999999999999998653 234666665544
No 417
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.86 E-value=0.0012 Score=73.01 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAF 1058 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 1058 (1436)
+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+.+....-+++++++--+.....+.|
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc
Confidence 456555543 33578899999999965 687776654444444433333466666544443333344
No 418
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.84 E-value=0.0011 Score=73.27 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=38.4
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCC-CCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEIST-GLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.|.-.+.. ...+.+-+++++||+-. ++|.......++.+..... ...+++++.+.+.+...+++++
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 34444432 33478889999999976 6877766555555444321 1234555556666555555543
No 419
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.83 E-value=0.0029 Score=75.88 Aligned_cols=46 Identities=24% Similarity=0.077 Sum_probs=39.6
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 171 HDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 171 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeeccc
Confidence 677777 89999999999999999999999999875 78888766543
No 420
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.82 E-value=0.0028 Score=67.19 Aligned_cols=31 Identities=42% Similarity=0.509 Sum_probs=27.3
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
.++|.++.|+|++||||||+.+.|++.+.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3478999999999999999999999987653
No 421
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.78 E-value=0.066 Score=62.83 Aligned_cols=35 Identities=37% Similarity=0.442 Sum_probs=28.9
Q ss_pred eecce--EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 170 LHDVS--GIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 170 L~~vs--~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
|+.+- +-+++|+++.|.||||+|||||...++...
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44432 458899999999999999999999887654
No 422
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.75 E-value=0.031 Score=64.80 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=28.5
Q ss_pred ccccce-EEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 866 FLKGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 866 iL~~vs-~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345444 6799999999999999999999988774
No 423
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.72 E-value=0.009 Score=70.23 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=28.4
Q ss_pred ccccce--EEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 866 FLKGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 866 iL~~vs--~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455543 4689999999999999999999988774
No 424
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.67 E-value=0.0022 Score=79.98 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=40.1
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
..+++++++.+ +|+.++|+||||+|||||+++|++... +..|.|.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 34678888888 899999999999999999999998764 45677776664
No 425
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.67 E-value=0.0081 Score=68.16 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.8
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+.++.-+.|.||+|+|||||.++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566678999999999999999998754
No 426
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.67 E-value=0.0048 Score=73.17 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=26.1
Q ss_pred ceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 173 VSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 173 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3445678889999999999999999999987
No 427
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.65 E-value=0.0015 Score=77.17 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=35.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 34678888877 999999999999999998864332 344433333221110011234444443333345666
Q ss_pred HHHHh
Q 046196 247 ETLAF 251 (1436)
Q Consensus 247 E~l~f 251 (1436)
|+.-+
T Consensus 101 DTpG~ 105 (361)
T 2qag_A 101 DTPGY 105 (361)
T ss_dssp C----
T ss_pred Eeccc
Confidence 66544
No 428
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.65 E-value=0.01 Score=64.97 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=42.0
Q ss_pred CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCCHHHHHhhCeEEEEe
Q 046196 1008 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 1008 ~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~D~v~~l~ 1065 (1436)
+|+++++||.-. |+.. +.+.++.+++.|.+||++-| .++.++.+.+|+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 45566777777999999999 55677888999999875
No 429
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.65 E-value=0.023 Score=68.97 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=33.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
..-|+.+.+-+++|+++.|.|+||+|||||+..++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34578877789999999999999999999999988764
No 430
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.63 E-value=0.0021 Score=73.69 Aligned_cols=46 Identities=26% Similarity=0.140 Sum_probs=38.1
Q ss_pred ec-ceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 046196 171 HD-VSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220 (1436)
Q Consensus 171 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 220 (1436)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 45 777776 9999999999999999999999998764 6777765543
No 431
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.62 E-value=0.0036 Score=70.12 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=32.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 456788999999999999999999998764 24566777544
No 432
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.57 E-value=0.0015 Score=76.08 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=33.0
Q ss_pred eeecceEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcC
Q 046196 169 ILHDVSGIIKPQRL--TLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 169 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
++++++..+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 67778888888888 99999999999999999999864
No 433
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.56 E-value=0.0047 Score=64.97 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.3
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999864
No 434
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.49 E-value=0.0097 Score=63.80 Aligned_cols=113 Identities=14% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP 955 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~ 955 (1436)
+..-+.|.||+|+|||||+++|+.... .....+.+ .+..+.+.-........
T Consensus 53 ~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~ 104 (202)
T 2w58_A 53 KMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLI--------------------------VYVPELFRELKHSLQDQ 104 (202)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEE--------------------------EEHHHHHHHHHHC---C
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEE--------------------------EEhHHHHHHHHHHhccc
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC--CCCCCHHHHHHHHHHH
Q 046196 956 EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP--TSGLDARAAAIVMRTV 1033 (1436)
Q Consensus 956 ~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP--TsgLD~~~~~~i~~~l 1033 (1436)
.. .+.++.+ .++++|++||+ ...-|......+..++
T Consensus 105 ~~---------~~~~~~~---------------------------------~~~~~lilDei~~~~~~~~~~~~ll~~~l 142 (202)
T 2w58_A 105 TM---------NEKLDYI---------------------------------KKVPVLMLDDLGAEAMSSWVRDDVFGPIL 142 (202)
T ss_dssp CC---------HHHHHHH---------------------------------HHSSEEEEEEECCC---CCGGGTTHHHHH
T ss_pred hH---------HHHHHHh---------------------------------cCCCEEEEcCCCCCcCCHHHHHHHHHHHH
Q ss_pred HHHHhCCCEEEEEecCCCHHHHHhh
Q 046196 1034 RNTVDTGRTVVCTIHQPSIDIFDAF 1058 (1436)
Q Consensus 1034 ~~~~~~g~tvi~~~H~~~~~~~~~~ 1058 (1436)
......+..+|++++.+..++...+
T Consensus 143 ~~~~~~~~~~i~tsn~~~~~l~~~~ 167 (202)
T 2w58_A 143 QYRMFENLPTFFTSNFDMQQLAHHL 167 (202)
T ss_dssp HHHHHTTCCEEEEESSCHHHHHHHS
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHH
No 435
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.47 E-value=0.005 Score=67.35 Aligned_cols=56 Identities=23% Similarity=0.103 Sum_probs=37.1
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCCCC-CceeEEEEE--------CCccCCc----ccccceEEEeecC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRKTG-GYVSGSITI--------SGYPKNQ----ETFARISGYCEQT 932 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~q~ 932 (1436)
+.+++|+|+|||||||+.+.|++.... -+..|++.. +|.++.. ..+.+.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 568999999999999999999975411 134577665 5655431 1233445666664
No 436
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.41 E-value=0.046 Score=60.25 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=29.1
Q ss_pred hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 046196 1007 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1048 (1436)
Q Consensus 1007 ~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1048 (1436)
.+|+++++..+.+.++......+...++.... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999999888888766665555443322 1258888888
No 437
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.41 E-value=0.0053 Score=66.17 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.1
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4588999999999999999999998654
No 438
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.39 E-value=0.006 Score=64.65 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.0
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46778888999999999999999999999864
No 439
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.37 E-value=0.013 Score=60.57 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999964
No 440
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.33 E-value=0.014 Score=60.21 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 441
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.30 E-value=0.0032 Score=68.38 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=31.8
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeE--EEEECC
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSG--SITISG 914 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G--~i~i~g 914 (1436)
.+++|.+++|+|++||||||+.+.|++... +..| .+.++|
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 356899999999999999999999998653 2345 666664
No 442
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.27 E-value=0.021 Score=66.09 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=34.1
Q ss_pred hhCCCcceeeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 046196 1006 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1050 (1436)
Q Consensus 1006 ~~~p~illlDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1050 (1436)
..++++||+||+-. .-|..+...+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999865 2344677888888888777777777777754
No 443
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.26 E-value=0.0089 Score=66.81 Aligned_cols=45 Identities=33% Similarity=0.524 Sum_probs=30.1
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 220 (1436)
.++++++..++| ++|.||||+|||||+++|++.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHH
Confidence 355666656555 8899999999999999999986532 25566543
No 444
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.26 E-value=0.043 Score=62.13 Aligned_cols=28 Identities=43% Similarity=0.661 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++.-++|.||+|+|||||+++++..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998753
No 445
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.25 E-value=0.013 Score=67.85 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
++..+.|.||+|+|||||+++|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 345788999999999999999998764
No 446
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.19 E-value=0.0079 Score=64.60 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 046196 182 LTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G 202 (1436)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 447
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.14 E-value=0.0095 Score=62.83 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.+|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 448
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.13 E-value=0.044 Score=64.46 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.8
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455678899999999999999998653
No 449
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.07 E-value=0.0031 Score=73.37 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=33.6
Q ss_pred cccccceEEEeCCeE--EEEEccCCCChhHHHHhHcCCC
Q 046196 865 EFLKGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~--~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.+++.+++.+++|+. ++|+|++||||||+.++|++..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999998 9999999999999999999854
No 450
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.03 E-value=0.011 Score=62.02 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 451
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.02 E-value=0.0069 Score=65.04 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 452
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.01 E-value=0.018 Score=60.51 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 453
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.97 E-value=0.018 Score=68.01 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.1
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999998643
No 454
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.95 E-value=0.0096 Score=70.57 Aligned_cols=44 Identities=18% Similarity=0.384 Sum_probs=33.3
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcCCCC---------CCceeEEEEECCc
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYVSGSITISGY 915 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~---------~~~~~G~i~i~g~ 915 (1436)
+.++.|..++|+|+||+|||||++.|+|... -.+..|.+.+.|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999999621 1245688877664
No 455
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.91 E-value=0.038 Score=60.35 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=36.5
Q ss_pred CCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEe---------cCchhHHHhcccEEEec
Q 046196 343 PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLL---------QPAPETYELFDDLILLS 401 (1436)
Q Consensus 343 ~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~---------q~~~~~~~~~D~iivL~ 401 (1436)
+++++++||.-. |+.. +++.++.++. .+.++|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 579999999964 6643 4455566554 3445555433 45788999999999875
No 456
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.90 E-value=0.011 Score=61.89 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 457
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.88 E-value=0.0094 Score=61.81 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987753
No 458
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.86 E-value=0.0087 Score=64.28 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 459
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.82 E-value=0.12 Score=63.89 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=29.1
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
-|+.+.+-+.+|+++.|.|++|+|||||..-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4666666799999999999999999999877763
No 460
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.75 E-value=0.0043 Score=72.63 Aligned_cols=41 Identities=29% Similarity=0.546 Sum_probs=35.8
Q ss_pred ceeeecceEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 167 LTILHDVSGIIKPQRL--TLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
..+++.++..++.|++ +++.||||+||||+++++++.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3478888888899998 9999999999999999999987543
No 461
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.62 E-value=0.015 Score=61.49 Aligned_cols=27 Identities=44% Similarity=0.604 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998754
No 462
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.60 E-value=0.014 Score=61.42 Aligned_cols=38 Identities=34% Similarity=0.337 Sum_probs=28.3
Q ss_pred eEEEEEccCCCChhHHHHhHcCCCC-CCceeEEEEECCc
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGRKT-GGYVSGSITISGY 915 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~ 915 (1436)
.+++|+|+||||||||++.|.+... .+..-|.|..+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999987532 1223467776654
No 463
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.57 E-value=0.013 Score=64.63 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998765
No 464
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.57 E-value=0.007 Score=72.60 Aligned_cols=46 Identities=24% Similarity=0.115 Sum_probs=36.8
Q ss_pred ccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 868 KGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 868 ~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
+++++. +|++++++|+||+||||++..|++.... ..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 567777 8999999999999999999999987542 356777766543
No 465
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.50 E-value=0.0079 Score=67.26 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=34.0
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
++++.+ ..+++.++.|+|++||||||+.+.|+.... .+.+.++|.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D 66 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGD 66 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecH
Confidence 444444 567889999999999999999999997653 134666664
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.48 E-value=0.014 Score=64.39 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=24.8
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999865
No 467
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.42 E-value=0.019 Score=60.60 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987653
No 468
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.41 E-value=0.16 Score=59.73 Aligned_cols=27 Identities=37% Similarity=0.624 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++..-++|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455678999999999999999998865
No 469
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.38 E-value=0.006 Score=69.96 Aligned_cols=46 Identities=26% Similarity=0.160 Sum_probs=34.8
Q ss_pred cc-ceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 868 KG-VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 868 ~~-vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
++ +++..+ |++++++|++|+||||++..|++... ...|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecC
Confidence 45 677766 99999999999999999999998653 223556655443
No 470
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.36 E-value=0.02 Score=65.31 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=28.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG 218 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 218 (1436)
++|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3568999999999999999999987653 24556665
No 471
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.35 E-value=0.019 Score=60.75 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=25.1
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|.++.|+|++||||||+.+.|++..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999764
No 472
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.33 E-value=0.016 Score=64.82 Aligned_cols=25 Identities=40% Similarity=0.695 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 473
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.25 E-value=0.16 Score=58.69 Aligned_cols=119 Identities=23% Similarity=0.284 Sum_probs=0.0
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC-CCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~-~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~ 953 (1436)
.|..-+.|.||+|+|||||.+.++... . ..-+.+++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~-------------------------------------- 80 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSS-------------------------------------- 80 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECC--------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhH--------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC-------CCCCCHHHH
Q 046196 954 PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-------TSGLDARAA 1026 (1436)
Q Consensus 954 ~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP-------TsgLD~~~~ 1026 (1436)
.+....+| ...+.-|-.+..+-..+|.|||+||. ..+......
T Consensus 81 -----------------------~l~~~~~g-------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 130 (322)
T 1xwi_A 81 -----------------------DLVSKWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR 130 (322)
T ss_dssp -----------------------SSCCSSCC-------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHH
T ss_pred -----------------------HHHhhhhh-------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHH
Q ss_pred HHHHHHHHHH-----HhCCCEEEEEecCC---CHHHHHhhCeEEEEe
Q 046196 1027 AIVMRTVRNT-----VDTGRTVVCTIHQP---SIDIFDAFDELLLMK 1065 (1436)
Q Consensus 1027 ~~i~~~l~~~-----~~~g~tvi~~~H~~---~~~~~~~~D~v~~l~ 1065 (1436)
..+.+.+..+ ...+..||.++..| +..+...||+++.+.
T Consensus 131 ~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~ 177 (322)
T 1xwi_A 131 RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIP 177 (322)
T ss_dssp HHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECC
T ss_pred HHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeC
No 474
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.24 E-value=0.019 Score=60.54 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 475
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.24 E-value=0.0065 Score=71.07 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=34.6
Q ss_pred cccccccceEEEeCCeE--EEEEccCCCChhHHHHhHcCCC
Q 046196 863 RLEFLKGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~--~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
...+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34588888889999998 9999999999999999999864
No 476
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.24 E-value=0.023 Score=60.81 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999876
No 477
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.19 E-value=0.021 Score=60.09 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 478
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.17 E-value=0.085 Score=72.88 Aligned_cols=30 Identities=37% Similarity=0.446 Sum_probs=27.7
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999988654
No 479
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.15 E-value=0.022 Score=59.98 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 480
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.12 E-value=0.022 Score=65.37 Aligned_cols=30 Identities=37% Similarity=0.566 Sum_probs=26.6
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.++++.-++|.||||+|||||.++|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 356788999999999999999999999763
No 481
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.10 E-value=0.024 Score=59.67 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 482
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.10 E-value=0.017 Score=75.32 Aligned_cols=32 Identities=44% Similarity=0.621 Sum_probs=29.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
+.+++|+.++|+||||||||||+++|+|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999998754
No 483
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.09 E-value=0.054 Score=63.80 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~ 953 (1436)
+++|+++.|.|++|+|||||...++..... .-..-++++..........+..|.-.++-.+....|+.+.+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l-------- 141 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQAL-------- 141 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH--------
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHH--------
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCcceeeCCCCCC----------
Q 046196 954 PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL---------- 1021 (1436)
Q Consensus 954 ~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~--~~p~illlDEPTsgL---------- 1021 (1436)
.+++.++ .+++++++|..++=.
T Consensus 142 ----------------------------------------------~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~g 175 (366)
T 1xp8_A 142 ----------------------------------------------EIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMG 175 (366)
T ss_dssp ----------------------------------------------HHHHHHHTTTCCSEEEEECTTTCCCSTTC-----
T ss_pred ----------------------------------------------HHHHHHHhcCCCCEEEEeChHHhccccccccccc
Q ss_pred CH---HHHHHHHHHHHHH----HhCCCEEEEEec
Q 046196 1022 DA---RAAAIVMRTVRNT----VDTGRTVVCTIH 1048 (1436)
Q Consensus 1022 D~---~~~~~i~~~l~~~----~~~g~tvi~~~H 1048 (1436)
|. ..++.+.+.++++ .+.+++||++.|
T Consensus 176 d~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 176 DSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
No 484
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.07 E-value=0.024 Score=58.62 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 046196 182 LTLLLGPPSSGKTTLLLAL 200 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L 200 (1436)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 485
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.04 E-value=0.028 Score=60.42 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999987654
No 486
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.03 E-value=0.019 Score=61.55 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.9
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
..+++|+|++||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998653
No 487
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.01 E-value=0.076 Score=59.06 Aligned_cols=120 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~ 953 (1436)
+++..-+.|.||+|+|||||.+.++.... .--+.+++.......
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~~~-------------------------------- 79 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVEVI-------------------------------- 79 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSSSS--------------------------------
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHhhc--------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC-----------C
Q 046196 954 PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL-----------D 1022 (1436)
Q Consensus 954 ~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL-----------D 1022 (1436)
.-.+..+.+-.+..+.-..|.+|++||.-.=. +
T Consensus 80 ------------------------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~ 123 (262)
T 2qz4_A 80 ------------------------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123 (262)
T ss_dssp ------------------------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC----------------
T ss_pred ------------------------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccc
Q ss_pred HHHHHHHHHHHHHHHh----CCCEEEEEecCCC---HHHHH--hhCeEEEEe
Q 046196 1023 ARAAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDIFD--AFDELLLMK 1065 (1436)
Q Consensus 1023 ~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~~~--~~D~v~~l~ 1065 (1436)
......+.+.+..+.. .+..+|+++..+. ..+.. .||+.+.+.
T Consensus 124 ~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp ---CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
No 488
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.00 E-value=0.027 Score=58.73 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G 202 (1436)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 489
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.90 E-value=0.021 Score=60.93 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998763
No 490
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.90 E-value=0.021 Score=59.51 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999988754
No 491
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.88 E-value=0.025 Score=59.37 Aligned_cols=26 Identities=46% Similarity=0.414 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.+..+.|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998654
No 492
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.85 E-value=0.028 Score=59.64 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999998764
No 493
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.83 E-value=0.027 Score=58.83 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999754
No 494
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.81 E-value=0.029 Score=60.31 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998764
No 495
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.80 E-value=0.084 Score=63.96 Aligned_cols=38 Identities=29% Similarity=0.353 Sum_probs=32.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 44577777779999999999999999999998887643
No 496
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.80 E-value=0.021 Score=59.62 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998765
No 497
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.79 E-value=0.025 Score=60.03 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3478999999999999999976653
No 498
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.76 E-value=0.026 Score=58.38 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+++|+|++||||||+.+.|+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 499
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.70 E-value=0.024 Score=62.55 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.8
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999864
No 500
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.68 E-value=0.033 Score=60.44 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G 202 (1436)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
Done!