Query 046200
Match_columns 212
No_of_seqs 169 out of 1342
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:44:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 1.9E-27 4.1E-32 175.2 8.7 101 17-117 1-106 (106)
2 PF01657 Stress-antifung: Salt 99.6 4.3E-16 9.3E-21 114.6 6.4 71 136-211 14-87 (106)
3 PHA00008 J DNA packaging prote 25.7 47 0.001 17.6 1.2 11 97-107 11-21 (26)
4 PF04726 Microvir_J: Microviru 18.4 45 0.00097 17.3 0.2 11 97-107 10-20 (24)
5 PF06906 DUF1272: Protein of u 11.3 1.9E+02 0.0041 18.7 1.7 19 192-210 31-49 (57)
6 PF02202 Tachykinin: Tachykini 10.5 25 0.00054 15.1 -1.7 7 62-68 4-10 (11)
7 KOG3671 Actin regulatory prote 8.8 5.4E+02 0.012 24.2 4.3 39 114-152 104-142 (569)
8 smart00203 TK Tachykinin famil 8.5 1.7E+02 0.0037 15.6 0.6 13 61-73 3-15 (26)
9 PF13923 zf-C3HC4_2: Zinc fing 8.1 1.8E+02 0.0039 16.4 0.7 17 79-96 21-37 (39)
10 PF07726 AAA_3: ATPase family 7.4 3E+02 0.0065 20.9 1.7 14 179-192 27-40 (131)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.94 E-value=1.9e-27 Score=175.21 Aligned_cols=101 Identities=34% Similarity=0.731 Sum_probs=77.6
Q ss_pred ccCCC-C-CCcc-CCCchHHHHHHHHHHHHHhhccCC--CCeeeeecCCCCCeeeEEccccCCCChhhHHHHHHHHHHHH
Q 046200 17 YHFCV-R-ESDT-SSGGLFMFNVGTLFSAKLYNEAGR--YLYSNATEGDYPDKVYGLYNCRFDVSNDVCQDCIKVAIHTI 91 (212)
Q Consensus 17 ~~~C~-~-~~~~-~~~s~f~~nl~~ll~~L~~~a~~~--~~f~~~~~g~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~~ 91 (212)
|+.|+ + ..++ +++++|+++|+.||..|+..++.. .+|+++..|.++++||||+||++||++.+|..||+.++..+
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 67899 4 4556 567789999999999999998654 57999988888899999999999999999999999999999
Q ss_pred hhhCCCCceeEEEccceeEEEcCcCC
Q 046200 92 VTNCTGAKEAIVWYDQCMVRFCNSSF 117 (212)
Q Consensus 92 ~~~C~~~~~a~i~~~~C~lRYs~~~f 117 (212)
+..|+.++||+||+++|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999998
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.63 E-value=4.3e-16 Score=114.57 Aligned_cols=71 Identities=38% Similarity=0.568 Sum_probs=56.3
Q ss_pred CChhhHHHHHHHHHHHHHHHhhh---ccccccccccccCCcccceeEEEEecCCCCCHHhHHHHHHHHhhccccccCCC
Q 046200 136 TDPYKFSNILAQSFSDLIQNVTS---RDFEYPAAAQMVNASSIDKLRTLVQCIPYLSKSDSNICLRGAVAQIPNCCYGK 211 (212)
Q Consensus 136 ~~~~~f~~~~~~ll~~l~~~a~~---~~fa~~~~~~~~~~~~~~~vYgLaQC~~DLs~~~C~~CL~~a~~~~~~~c~~~ 211 (212)
+++..|.+++..+|..|...++. ++|++++... + . .+||||+||++||++++|..||+.++.+|+++|+++
T Consensus 14 ~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~-~--~--~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~ 87 (106)
T PF01657_consen 14 TDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGS-G--P--DTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGS 87 (106)
T ss_dssp -TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--S-T-------EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSB
T ss_pred CCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCC-C--C--CeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCC
Confidence 44556999999999999999876 5999998532 2 3 899999999999999999999999999999999865
No 3
>PHA00008 J DNA packaging protein
Probab=25.66 E-value=47 Score=17.61 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=8.6
Q ss_pred CCceeEEEccc
Q 046200 97 GAKEAIVWYDQ 107 (212)
Q Consensus 97 ~~~~a~i~~~~ 107 (212)
.++||+.||.+
T Consensus 11 r~KGARLWYVG 21 (26)
T PHA00008 11 RRKGARLWYVG 21 (26)
T ss_pred ccCceEEEEec
Confidence 46799999864
No 4
>PF04726 Microvir_J: Microvirus J protein; InterPro: IPR006815 This small protein is involved in DNA packaging, interacting with DNA via its hydrophobic C terminus. In bacteriophage phi-X174, J is present in 60 copies, and forms an S-shaped polypeptide chain without any secondary structure. It is thought to interact with DNA through simple charge interactions [].; GO: 0003677 DNA binding, 0019073 viral DNA genome packaging, 0019028 viral capsid; PDB: 1M06_J 1GFF_3 1RB8_J 2BPA_3.
Probab=18.44 E-value=45 Score=17.30 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=4.8
Q ss_pred CCceeEEEccc
Q 046200 97 GAKEAIVWYDQ 107 (212)
Q Consensus 97 ~~~~a~i~~~~ 107 (212)
.++|++.||.+
T Consensus 10 ~~kgarlwyvg 20 (24)
T PF04726_consen 10 KRKGARLWYVG 20 (24)
T ss_dssp SSSSS----SS
T ss_pred ccCceEEEEec
Confidence 46799999864
No 5
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=11.32 E-value=1.9e+02 Score=18.66 Aligned_cols=19 Identities=16% Similarity=0.217 Sum_probs=12.2
Q ss_pred hHHHHHHHHhhccccccCC
Q 046200 192 DSNICLRGAVAQIPNCCYG 210 (212)
Q Consensus 192 ~C~~CL~~a~~~~~~~c~~ 210 (212)
-|..|.+..+..+-.-|+|
T Consensus 31 FC~~C~e~~l~~~CPNCgG 49 (57)
T PF06906_consen 31 FCADCAETMLNGVCPNCGG 49 (57)
T ss_pred ccHHHHHHHhcCcCcCCCC
Confidence 3888888877655444443
No 6
>PF02202 Tachykinin: Tachykinin family; InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=10.53 E-value=25 Score=15.07 Aligned_cols=7 Identities=71% Similarity=1.535 Sum_probs=4.1
Q ss_pred CCeeeEE
Q 046200 62 PDKVYGL 68 (212)
Q Consensus 62 ~~~vYgl 68 (212)
|++.|||
T Consensus 4 pd~F~GL 10 (11)
T PF02202_consen 4 PDQFYGL 10 (11)
T ss_dssp HHHHCCC
T ss_pred cccceec
Confidence 3556665
No 7
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=8.84 E-value=5.4e+02 Score=24.20 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=20.2
Q ss_pred CcCCCCCCCCCCceEEEeeccCCChhhHHHHHHHHHHHH
Q 046200 114 NSSFPSWLETEPSVALLITINVTDPYKFSNILAQSFSDL 152 (212)
Q Consensus 114 ~~~f~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ll~~l 152 (212)
...||..++.+.-+.-.|=-++.+...|.+.|.+.+..-
T Consensus 104 ~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~r~~~~ 142 (569)
T KOG3671|consen 104 PRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQDRICHR 142 (569)
T ss_pred CccceeeeccccceeeecccCHHHHHHHHHHHHHHhhhh
Confidence 446666665544333333333334466777766666443
No 8
>smart00203 TK Tachykinin family. Tachykinins are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. These peptides are synthesized as longer precursors and then processed to peptides from ten to twelve residues long.
Probab=8.46 E-value=1.7e+02 Score=15.56 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=9.2
Q ss_pred CCCeeeEEccccC
Q 046200 61 YPDKVYGLYNCRF 73 (212)
Q Consensus 61 ~~~~vYgl~qC~~ 73 (212)
.|+++|||+.-..
T Consensus 3 ~Pd~FyGLM~~~~ 15 (26)
T smart00203 3 KPDQFYGLMXXXX 15 (26)
T ss_pred ChhhEEEeeeecc
Confidence 3678899887543
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=8.06 E-value=1.8e+02 Score=16.43 Aligned_cols=17 Identities=24% Similarity=0.827 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHhhhCC
Q 046200 79 VCQDCIKVAIHTIVTNCT 96 (212)
Q Consensus 79 ~C~~Cl~~a~~~~~~~C~ 96 (212)
-|..|+...... ...||
T Consensus 21 fC~~C~~~~~~~-~~~CP 37 (39)
T PF13923_consen 21 FCKECIEKYLEK-NPKCP 37 (39)
T ss_dssp EEHHHHHHHHHC-TSB-T
T ss_pred hhHHHHHHHHHC-cCCCc
Confidence 488999988776 56666
No 10
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=7.39 E-value=3e+02 Score=20.87 Aligned_cols=14 Identities=36% Similarity=0.290 Sum_probs=7.2
Q ss_pred EEEEecCCCCCHHh
Q 046200 179 RTLVQCIPYLSKSD 192 (212)
Q Consensus 179 YgLaQC~~DLs~~~ 192 (212)
|.-+||++||-++|
T Consensus 27 f~RIq~tpdllPsD 40 (131)
T PF07726_consen 27 FKRIQFTPDLLPSD 40 (131)
T ss_dssp EEEEE--TT--HHH
T ss_pred eeEEEecCCCCccc
Confidence 34579999999876
Done!