Query 046200
Match_columns 212
No_of_seqs 169 out of 1342
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 100.0 2.7E-30 9.4E-35 189.9 10.9 106 11-117 1-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 100.0 1E-29 3.4E-34 187.0 10.5 105 12-117 2-108 (108)
3 2e79_A Ginkbilobin-2; DUF26 fo 99.7 7.5E-18 2.6E-22 123.4 8.2 87 122-212 2-90 (108)
4 3a2e_A Ginkbilobin-2; domain 2 99.7 9.3E-18 3.2E-22 122.9 8.2 86 123-212 3-90 (108)
5 1gff_3 Bacteriophage G4 capsid 22.1 39 0.0013 17.0 1.2 11 97-107 11-21 (26)
6 1m06_J J protein, small core p 11.8 38 0.0013 17.1 -0.4 11 97-107 10-20 (26)
7 2xk0_A Polycomb protein PCL; t 10.2 1.3E+02 0.0044 19.3 1.6 12 105-116 41-52 (69)
8 1weo_A Cellulose synthase, cat 7.4 89 0.003 21.2 -0.0 30 76-115 42-71 (93)
9 2li3_A Potassium channel toxin 5.9 39 0.0013 17.7 -1.9 16 65-80 7-22 (30)
10 3p8d_A Medulloblastoma antigen 5.0 1.9E+02 0.0066 18.3 0.5 15 105-119 10-24 (67)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.97 E-value=2.7e-30 Score=189.93 Aligned_cols=106 Identities=24% Similarity=0.445 Sum_probs=96.0
Q ss_pred cCccccccCCCCCCccCCCchHHHHHHHHHHHHHhhccCC-CCeeeeecCC-CCCeeeEEccccCCCChhhHHHHHHHHH
Q 046200 11 LDSNYVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGR-YLYSNATEGD-YPDKVYGLYNCRFDVSNDVCQDCIKVAI 88 (212)
Q Consensus 11 ~~~~~~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~-~~f~~~~~g~-~~~~vYgl~qC~~Dls~~~C~~Cl~~a~ 88 (212)
+++.++++.|++ ++|+++++|++||+.||..|+++++.+ .+|+++..|. ++++||||+|||+|+++.+|+.||+.++
T Consensus 1 A~t~~v~~~Cn~-~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~ 79 (108)
T 3a2e_A 1 ANTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLV 79 (108)
T ss_dssp CCCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcceeeeecCC-CccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHH
Confidence 467899999975 799999999999999999999998654 3577776654 4689999999999999999999999999
Q ss_pred HHHhhhCCCCceeEEEccceeEEEcCcCC
Q 046200 89 HTIVTNCTGAKEAIVWYDQCMVRFCNSSF 117 (212)
Q Consensus 89 ~~~~~~C~~~~~a~i~~~~C~lRYs~~~f 117 (212)
.++++.||+++||+||+++|+||||+++|
T Consensus 80 ~~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 80 NRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp TTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 99999999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.96 E-value=1e-29 Score=186.95 Aligned_cols=105 Identities=24% Similarity=0.447 Sum_probs=96.5
Q ss_pred CccccccCCCCCCccCCCchHHHHHHHHHHHHHhhccCC-CCeeeeecCCCC-CeeeEEccccCCCChhhHHHHHHHHHH
Q 046200 12 DSNYVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGR-YLYSNATEGDYP-DKVYGLYNCRFDVSNDVCQDCIKVAIH 89 (212)
Q Consensus 12 ~~~~~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~-~~f~~~~~g~~~-~~vYgl~qC~~Dls~~~C~~Cl~~a~~ 89 (212)
+..++++.|++ +++++++.|++||+.||..|+.+++.+ .+|++++.|.++ ++||||+||+||+++.+|+.||+.++.
T Consensus 2 ~t~~~~~~C~~-~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 2e79_A 2 NTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceeeeeeCCC-CeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHH
Confidence 45678999998 899999999999999999999998654 368888877665 799999999999999999999999999
Q ss_pred HHhhhCCCCceeEEEccceeEEEcCcCC
Q 046200 90 TIVTNCTGAKEAIVWYDQCMVRFCNSSF 117 (212)
Q Consensus 90 ~~~~~C~~~~~a~i~~~~C~lRYs~~~f 117 (212)
++++.|++++||+||+++|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 9999999999999999999999999987
No 3
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.73 E-value=7.5e-18 Score=123.40 Aligned_cols=87 Identities=22% Similarity=0.232 Sum_probs=75.0
Q ss_pred CCCCceEEEeeccCCChhhHHHHHHHHHHHHHHHhhh--ccccccccccccCCcccceeEEEEecCCCCCHHhHHHHHHH
Q 046200 122 ETEPSVALLITINVTDPYKFSNILAQSFSDLIQNVTS--RDFEYPAAAQMVNASSIDKLRTLVQCIPYLSKSDSNICLRG 199 (212)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~f~~~~~~ll~~l~~~a~~--~~fa~~~~~~~~~~~~~~~vYgLaQC~~DLs~~~C~~CL~~ 199 (212)
++.+.+..|+..+++....|++++..||..|...|+. .+|+++++..++ . .+||||+||+|||++++|+.||+.
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~--~--~~vYgl~qC~~Dls~~~C~~Cl~~ 77 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGG--A--PTAYGRATCKQSISQSDCTACLSN 77 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTT--C--CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCC--C--CcEEEEEecCCCCChHHHHHHHHH
Confidence 4567788898888888889999999999999999875 578888655443 3 789999999999999999999999
Q ss_pred HhhccccccCCCC
Q 046200 200 AVAQIPNCCYGKR 212 (212)
Q Consensus 200 a~~~~~~~c~~~~ 212 (212)
++.+++++|++++
T Consensus 78 a~~~~~~~C~~~~ 90 (108)
T 2e79_A 78 LVNRIFSICNNAI 90 (108)
T ss_dssp HHTTHHHHTTSBS
T ss_pred HHHHHHHhCCCCc
Confidence 9999999998764
No 4
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.73 E-value=9.3e-18 Score=122.91 Aligned_cols=86 Identities=22% Similarity=0.231 Sum_probs=73.9
Q ss_pred CCCceEEEeeccCCChhhHHHHHHHHHHHHHHHhhh--ccccccccccccCCcccceeEEEEecCCCCCHHhHHHHHHHH
Q 046200 123 TEPSVALLITINVTDPYKFSNILAQSFSDLIQNVTS--RDFEYPAAAQMVNASSIDKLRTLVQCIPYLSKSDSNICLRGA 200 (212)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~f~~~~~~ll~~l~~~a~~--~~fa~~~~~~~~~~~~~~~vYgLaQC~~DLs~~~C~~CL~~a 200 (212)
+...+..||..+++.+..|.+++..||..|...++. .+|+++.....+ . .+||||+||+|||++++|..||+.+
T Consensus 3 t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~--~--~~vygl~qC~~Dls~~~C~~Cl~~a 78 (108)
T 3a2e_A 3 TAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGG--A--PTAYGRATCKQSISQSDCTACLSNL 78 (108)
T ss_dssp CCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTT--C--CCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCC--C--ceEEEEEEEcCCCCHHHHHHHHHHH
Confidence 445667889889888889999999999999999876 667776655443 4 7999999999999999999999999
Q ss_pred hhccccccCCCC
Q 046200 201 VAQIPNCCYGKR 212 (212)
Q Consensus 201 ~~~~~~~c~~~~ 212 (212)
+.+|+++|++++
T Consensus 79 ~~~~~~~C~~~~ 90 (108)
T 3a2e_A 79 VNRIFSICNNAI 90 (108)
T ss_dssp HTTHHHHTTSBS
T ss_pred HHHHHHHCCCCc
Confidence 999999999764
No 5
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=22.07 E-value=39 Score=16.98 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=8.6
Q ss_pred CCceeEEEccc
Q 046200 97 GAKEAIVWYDQ 107 (212)
Q Consensus 97 ~~~~a~i~~~~ 107 (212)
.++|++.||.+
T Consensus 11 r~kgarlwyvg 21 (26)
T 1gff_3 11 KSKGARLWYVG 21 (26)
T ss_pred CCCceEEEEec
Confidence 46799999864
No 6
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=11.85 E-value=38 Score=17.08 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=8.3
Q ss_pred CCceeEEEccc
Q 046200 97 GAKEAIVWYDQ 107 (212)
Q Consensus 97 ~~~~a~i~~~~ 107 (212)
.++|++.||.+
T Consensus 10 r~kgarlwyvg 20 (26)
T 1m06_J 10 RRKGARLWYVG 20 (26)
T ss_dssp CCSSSCCCCSS
T ss_pred cCCceEEEEEc
Confidence 46789999864
No 7
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=10.16 E-value=1.3e+02 Score=19.25 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=9.6
Q ss_pred ccceeEEEcCcC
Q 046200 105 YDQCMVRFCNSS 116 (212)
Q Consensus 105 ~~~C~lRYs~~~ 116 (212)
-.+|++||++.+
T Consensus 41 ~~~ClV~FeD~S 52 (69)
T 2xk0_A 41 SDQYLIRFDDQS 52 (69)
T ss_dssp SSCEEEEETTCC
T ss_pred CceEEEEecCCc
Confidence 457999999874
No 8
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=7.44 E-value=89 Score=21.20 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=25.4
Q ss_pred ChhhHHHHHHHHHHHHhhhCCCCceeEEEccceeEEEcCc
Q 046200 76 SNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNS 115 (212)
Q Consensus 76 s~~~C~~Cl~~a~~~~~~~C~~~~~a~i~~~~C~lRYs~~ 115 (212)
.-..|+.|+.--..+-.+.|| +|-.||..+
T Consensus 42 ~FPvCrpCyEYErkeG~q~Cp----------qCktrYkr~ 71 (93)
T 1weo_A 42 GFPACRPCYEYERREGTQNCP----------QCKTRYKRL 71 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCT----------TTCCCCCCC
T ss_pred CChhhHHHHHHHHhccCcccc----------ccCCccccc
Confidence 456799999999999999999 788899743
No 9
>2li3_A Potassium channel toxin kappa-KTX3.1; alpha/alpha motif, alpha scorpion toxin, voltage gated potas channel alpha toxin; NMR {Tityus trivittatus} PDB: 2lka_A 2lo7_A
Probab=5.87 E-value=39 Score=17.71 Aligned_cols=16 Identities=44% Similarity=0.673 Sum_probs=12.8
Q ss_pred eeEEccccCCCChhhH
Q 046200 65 VYGLYNCRFDVSNDVC 80 (212)
Q Consensus 65 vYgl~qC~~Dls~~~C 80 (212)
-|-..||++-+|.+-|
T Consensus 7 eyca~~cr~kvsq~yc 22 (30)
T 2li3_A 7 EYCAGQCRGKVSQDYC 22 (30)
T ss_dssp HHHHHHSCTTHHHHHH
T ss_pred hHhhhheeeeechHHH
Confidence 3667899999888877
No 10
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=4.98 E-value=1.9e+02 Score=18.26 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=12.5
Q ss_pred ccceeEEEcCcCCCC
Q 046200 105 YDQCMVRFCNSSFPS 119 (212)
Q Consensus 105 ~~~C~lRYs~~~f~~ 119 (212)
.+.|+.||++..||.
T Consensus 10 Gd~vmArW~D~~yYp 24 (67)
T 3p8d_A 10 NEQVLACWSDCRFYP 24 (67)
T ss_dssp TCEEEEECTTSCEEE
T ss_pred CCEEEEEcCCCCEee
Confidence 578999998888884
Done!