Query 046200
Match_columns 212
No_of_seqs 169 out of 1342
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 16:59:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046200.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046200hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ucra_ a.4.5.45 (A:) Dissimil 7.4 1.5E+02 0.011 17.5 2.7 29 143-181 37-65 (74)
2 d1weoa_ g.44.1.1 (A:) Cellulos 5.9 59 0.0043 20.3 0.1 31 76-116 42-72 (93)
3 d1g25a_ g.44.1.1 (A:) TFIIH Ma 5.6 86 0.0063 17.6 0.7 20 78-97 29-48 (65)
4 d2baia1 g.87.1.1 (A:1-32) Poly 5.6 1.5E+02 0.011 14.1 1.5 14 184-197 10-23 (32)
5 d1l8na2 d.92.2.2 (A:4-142) alp 5.5 2.6E+02 0.019 17.9 3.5 12 105-116 2-13 (139)
6 d1rmda2 g.44.1.1 (A:1-86) V(D) 5.2 1.2E+02 0.0085 18.4 1.2 20 78-97 44-63 (86)
7 d1wiga2 g.39.1.3 (A:33-73) Act 5.0 80 0.0058 16.6 0.2 11 99-109 18-28 (41)
8 d2cupa3 g.39.1.3 (A:8-34) Four 4.2 1.2E+02 0.0091 14.2 0.6 8 102-109 20-27 (27)
9 d2o35a1 a.293.1.1 (A:2-80) Hyp 4.1 1.2E+02 0.0089 18.3 0.7 8 193-200 41-48 (79)
10 d1f32a_ d.62.1.1 (A:) Pepsin i 3.6 2.8E+02 0.02 18.5 2.3 20 92-111 62-81 (147)
No 1
>d1ucra_ a.4.5.45 (A:) Dissimilatory sulfite reductase DsvD {Desulfovibrio vulgaris [TaxId: 881]}
Probab=7.37 E-value=1.5e+02 Score=17.54 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccCCcccceeEEE
Q 046200 143 NILAQSFSDLIQNVTSRDFEYPAAAQMVNASSIDKLRTL 181 (212)
Q Consensus 143 ~~~~~ll~~l~~~a~~~~fa~~~~~~~~~~~~~~~vYgL 181 (212)
+.+..++..|+....-..|..| + .+.|||
T Consensus 37 R~vKK~~~~lV~e~~L~ywSSG--------S--TTMYgl 65 (74)
T d1ucra_ 37 REVKKILTALVNDEVLEYWSSG--------S--TTMYGL 65 (74)
T ss_dssp HHHHHHHHHHHHTTSEEEEEET--------T--EEEEEE
T ss_pred HHHHHHHHHHhccceEEEEcCC--------C--cEEecc
Confidence 3345555555543332445554 3 688987
No 2
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=5.88 E-value=59 Score=20.28 Aligned_cols=31 Identities=23% Similarity=0.503 Sum_probs=25.7
Q ss_pred ChhhHHHHHHHHHHHHhhhCCCCceeEEEccceeEEEcCcC
Q 046200 76 SNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSS 116 (212)
Q Consensus 76 s~~~C~~Cl~~a~~~~~~~C~~~~~a~i~~~~C~lRYs~~~ 116 (212)
.-..|+.|..--..+-.+.|| +|-.||..+.
T Consensus 42 ~FPvCrpCyEYErkeG~q~Cp----------qCkt~Ykr~k 72 (93)
T d1weoa_ 42 GFPACRPCYEYERREGTQNCP----------QCKTRYKRLR 72 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCT----------TTCCCCCCCT
T ss_pred CCccchHHHHHHHhccCccCc----------ccCChhhhhc
Confidence 445799999999999889998 7888887654
No 3
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.59 E-value=86 Score=17.64 Aligned_cols=20 Identities=20% Similarity=0.652 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHhhhCCC
Q 046200 78 DVCQDCIKVAIHTIVTNCTG 97 (212)
Q Consensus 78 ~~C~~Cl~~a~~~~~~~C~~ 97 (212)
.-|..||..........||.
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 45899999998765567885
No 4
>d2baia1 g.87.1.1 (A:1-32) Polyprotein leader polypeptide {Mengo encephalomyocarditis virus [TaxId: 12107]}
Probab=5.56 E-value=1.5e+02 Score=14.08 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=12.2
Q ss_pred cCCCCCHHhHHHHH
Q 046200 184 CIPYLSKSDSNICL 197 (212)
Q Consensus 184 C~~DLs~~~C~~CL 197 (212)
|.-.+.-+.|..|-
T Consensus 10 cahsmtfeecpkcs 23 (32)
T d2baia1 10 CAHSMTFEECPKCS 23 (32)
T ss_dssp CSSSSCGGGHHHHH
T ss_pred HHhhccHhhCcchh
Confidence 78888999999995
No 5
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.51 E-value=2.6e+02 Score=17.93 Aligned_cols=12 Identities=25% Similarity=0.841 Sum_probs=9.3
Q ss_pred ccceeEEEcCcC
Q 046200 105 YDQCMVRFCNSS 116 (212)
Q Consensus 105 ~~~C~lRYs~~~ 116 (212)
|+.|.|||..-+
T Consensus 2 y~~~WLrY~~~~ 13 (139)
T d1l8na2 2 YEPCWLRYERKD 13 (139)
T ss_dssp CCCTTCCCCCCC
T ss_pred CcchhcCCCccc
Confidence 677999998653
No 6
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.18 E-value=1.2e+02 Score=18.39 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHhhhCCC
Q 046200 78 DVCQDCIKVAIHTIVTNCTG 97 (212)
Q Consensus 78 ~~C~~Cl~~a~~~~~~~C~~ 97 (212)
.-|+.||......-...||.
T Consensus 44 ~FC~~Ci~~~~~~~~~~CP~ 63 (86)
T d1rmda2 44 LFCRICILRCLKVMGSYCPS 63 (86)
T ss_dssp EEEHHHHHHHHHHTCSBCTT
T ss_pred hhhHHHHHHHHhhCCCcCcc
Confidence 45999999988655557883
No 7
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.01 E-value=80 Score=16.61 Aligned_cols=11 Identities=18% Similarity=0.727 Sum_probs=7.5
Q ss_pred ceeEEEcccee
Q 046200 99 KEAIVWYDQCM 109 (212)
Q Consensus 99 ~~a~i~~~~C~ 109 (212)
+|..||.+.|.
T Consensus 18 QGs~IWHP~C~ 28 (41)
T d1wiga2 18 QGSSIWHPACR 28 (41)
T ss_dssp ETTEEECTTHH
T ss_pred cCCceeCCccc
Confidence 36677877774
No 8
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.23 E-value=1.2e+02 Score=14.16 Aligned_cols=8 Identities=38% Similarity=1.144 Sum_probs=4.0
Q ss_pred EEEcccee
Q 046200 102 IVWYDQCM 109 (212)
Q Consensus 102 ~i~~~~C~ 109 (212)
|.|.+.||
T Consensus 20 r~wh~~cf 27 (27)
T d2cupa3 20 RFWHDTCF 27 (27)
T ss_dssp EEEETTTC
T ss_pred cccccccC
Confidence 44555553
No 9
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=4.15 E-value=1.2e+02 Score=18.28 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=6.2
Q ss_pred HHHHHHHH
Q 046200 193 SNICLRGA 200 (212)
Q Consensus 193 C~~CL~~a 200 (212)
|+.||+.=
T Consensus 41 CRNCLskW 48 (79)
T d2o35a1 41 CRNCLSNW 48 (79)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHH
Confidence 88898763
No 10
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=3.64 E-value=2.8e+02 Score=18.52 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=16.4
Q ss_pred hhhCCCCceeEEEccceeEE
Q 046200 92 VTNCTGAKEAIVWYDQCMVR 111 (212)
Q Consensus 92 ~~~C~~~~~a~i~~~~C~lR 111 (212)
++.|.+.-.-..++++|+++
T Consensus 62 PsFCt~~DTtq~yFdgCmVq 81 (147)
T d1f32a_ 62 PPFCGPQDMKMFNFVGCSVL 81 (147)
T ss_dssp CGGGCCTTCEEEEETTEEEE
T ss_pred CCCCCcCcceEEEEeeeEEE
Confidence 46788877778889999997
Done!