Your job contains 1 sequence.
>046202
GDLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQI
KFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQ
RSLQKLQLENSQLKEEHEKVSNLLAKYIGKPICQMNSSLMPSLPGSAILEHQNVLPPPIL
PVHQEMDIGLDLNLQFKGINDLEQSLMMETATNAMDELIRLMRINEPLWIKPPSSTNIER
YVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVS
KARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSY
EWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYG
AERWVVTLQRTCERLLAENSQSIHEVGG
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046202
(448 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2206880 - symbol:HDG11 "AT1G73360" species:370... 1074 1.1e-108 1
TAIR|locus:2030913 - symbol:HDG12 "homeodomain GLABROUS 1... 1008 1.1e-101 1
TAIR|locus:2097770 - symbol:HDG8 "AT3G03260" species:3702... 994 3.4e-100 1
TAIR|locus:2135368 - symbol:PDF2 "AT4G04890" species:3702... 890 3.6e-89 1
TAIR|locus:2119048 - symbol:ATML1 "AT4G21750" species:370... 890 3.6e-89 1
TAIR|locus:2023932 - symbol:HDG10 "AT1G34650" species:370... 503 1.9e-87 2
TAIR|locus:2167230 - symbol:HDG9 "AT5G17320" species:3702... 862 3.3e-86 1
TAIR|locus:2098866 - symbol:HDG1 "AT3G61150" species:3702... 858 8.9e-86 1
TAIR|locus:2127008 - symbol:ANL2 "ANTHOCYANINLESS 2" spec... 856 1.4e-85 1
TAIR|locus:2207235 - symbol:HDG2 "AT1G05230" species:3702... 775 5.5e-77 1
TAIR|locus:2062540 - symbol:HDG3 "AT2G32370" species:3702... 725 1.1e-71 1
TAIR|locus:2145116 - symbol:HDG7 "AT5G52170" species:3702... 387 7.1e-70 2
TAIR|locus:2129396 - symbol:HDG4 "AT4G17710" species:3702... 437 1.3e-40 1
TAIR|locus:2131814 - symbol:FWA "AT4G25530" species:3702 ... 406 2.8e-37 1
TAIR|locus:2028140 - symbol:PHV "AT1G30490" species:3702 ... 137 3.9e-14 2
TAIR|locus:2061544 - symbol:PHB "AT2G34710" species:3702 ... 140 1.3e-13 2
TAIR|locus:2182850 - symbol:AT5G07260 "AT5G07260" species... 182 2.2e-13 2
TAIR|locus:2134088 - symbol:HB-8 "AT4G32880" species:3702... 143 2.2e-11 2
TAIR|locus:2175856 - symbol:REV "AT5G60690" species:3702 ... 136 1.7e-10 2
TAIR|locus:2034086 - symbol:ATHB-15 "AT1G52150" species:3... 133 2.8e-10 2
TAIR|locus:2154724 - symbol:HB52 "homeobox protein 52" sp... 125 3.5e-07 1
UNIPROTKB|F1RSD4 - symbol:PRRX1 "Uncharacterized protein"... 105 4.2e-07 2
TAIR|locus:2116442 - symbol:AT4G26920 "AT4G26920" species... 136 6.2e-06 1
UNIPROTKB|G3X7M1 - symbol:SHOX "Uncharacterized protein" ... 132 7.8e-06 1
ZFIN|ZDB-GENE-040426-1457 - symbol:shox2 "short stature h... 131 9.5e-06 1
UNIPROTKB|H0YJ32 - symbol:SHOX2 "Short stature homeobox p... 119 2.5e-05 1
UNIPROTKB|A6NLW8 - symbol:DUXA "Double homeobox protein A... 121 3.7e-05 1
TAIR|locus:2129136 - symbol:HB-2 "homeobox protein 2" spe... 125 3.8e-05 2
UNIPROTKB|F1NF72 - symbol:F1NF72 "Uncharacterized protein... 106 3.9e-05 1
RGD|1586211 - symbol:Hoxb8 "homeo box B8" species:10116 "... 105 5.0e-05 1
UNIPROTKB|F1PUR9 - symbol:DUXA "Uncharacterized protein" ... 113 6.2e-05 1
TAIR|locus:2144578 - symbol:HB51 "homeobox 51" species:37... 120 8.7e-05 1
UNIPROTKB|H9L2C7 - symbol:LHX4 "Uncharacterized protein" ... 120 9.0e-05 1
RGD|3674 - symbol:Shox2 "short stature homeobox 2" specie... 119 0.00012 1
UNIPROTKB|O35750 - symbol:Shox2 "Short stature homeobox p... 119 0.00012 1
ZFIN|ZDB-GENE-060728-1 - symbol:lhx4 "LIM homeobox 4" spe... 123 0.00013 1
ZFIN|ZDB-GENE-990415-205 - symbol:vsx1 "visual system hom... 122 0.00013 1
ZFIN|ZDB-GENE-980526-216 - symbol:eng1a "engrailed 1a" sp... 118 0.00014 1
TAIR|locus:2062754 - symbol:HB-7 "homeobox 7" species:370... 119 0.00015 1
ZFIN|ZDB-GENE-051030-21 - symbol:shox "short stature home... 120 0.00017 1
UNIPROTKB|F6QGM2 - symbol:LHX3 "LIM/homeobox protein Lhx3... 116 0.00018 1
UNIPROTKB|A6NLG4 - symbol:SHOX2 "cDNA FLJ38019 fis, clone... 114 0.00019 1
UNIPROTKB|Q0P031 - symbol:vsx1 "Visual system homeobox 1"... 120 0.00022 1
UNIPROTKB|I3L383 - symbol:HOXB8 "Homeobox protein Hox-B8"... 99 0.00022 1
WB|WBGene00013147 - symbol:eyg-1 species:6239 "Caenorhabd... 119 0.00024 1
UNIPROTKB|I3L828 - symbol:SHOX2 "Uncharacterized protein"... 119 0.00025 1
UNIPROTKB|F1S681 - symbol:LHX4 "Uncharacterized protein" ... 120 0.00025 1
UNIPROTKB|E1BLB9 - symbol:E1BLB9 "Uncharacterized protein... 119 0.00026 1
UNIPROTKB|O60902 - symbol:SHOX2 "Short stature homeobox p... 119 0.00026 1
UNIPROTKB|F1MFM7 - symbol:LHX4 "Uncharacterized protein" ... 120 0.00028 1
UNIPROTKB|Q969G2 - symbol:LHX4 "LIM/homeobox protein Lhx4... 120 0.00028 1
MGI|MGI:101776 - symbol:Lhx4 "LIM homeobox protein 4" spe... 120 0.00028 1
UNIPROTKB|F1PCI5 - symbol:LHX4 "Uncharacterized protein" ... 120 0.00028 1
ZFIN|ZDB-GENE-980526-484 - symbol:lhx5 "LIM homeobox 5" s... 120 0.00029 1
UNIPROTKB|P14839 - symbol:HOXB6 "Homeobox protein Hox-B6"... 98 0.00029 1
RGD|2320224 - symbol:LOC100364841 "rCG53272-like" species... 98 0.00029 1
UNIPROTKB|H0YLI9 - symbol:SHOX "Short stature homeobox pr... 115 0.00029 1
ZFIN|ZDB-GENE-070810-7 - symbol:nkx6.3 "NK6 homeobox 3" s... 117 0.00029 1
UNIPROTKB|F6Y4K5 - symbol:SHOX2 "Uncharacterized protein"... 118 0.00032 1
UNIPROTKB|E2QZN5 - symbol:SHOX2 "Uncharacterized protein"... 118 0.00035 1
UNIPROTKB|F1P4U7 - symbol:HOXD11 "Homeobox protein Hox-D1... 97 0.00037 1
TAIR|locus:2040520 - symbol:HB22 "homeobox protein 22" sp... 111 0.00039 1
MGI|MGI:1201673 - symbol:Shox2 "short stature homeobox 2"... 117 0.00044 1
RGD|1595784 - symbol:Hoxc9 "homeobox C9" species:10116 "R... 96 0.00047 1
UNIPROTKB|P18866 - symbol:Hoxc8 "Homeobox protein Hox-C8"... 96 0.00047 1
UNIPROTKB|H0YMR3 - symbol:SHOX "Short stature homeobox pr... 115 0.00052 1
UNIPROTKB|Q05917 - symbol:EN2 "Homeobox protein engrailed... 115 0.00056 1
UNIPROTKB|G3V2N3 - symbol:PRRX1 "Paired mesoderm homeobox... 107 0.00056 2
UNIPROTKB|F1Q361 - symbol:SHOX "Uncharacterized protein" ... 115 0.00057 1
UNIPROTKB|O15266 - symbol:SHOX "Short stature homeobox pr... 115 0.00057 1
UNIPROTKB|K7GS77 - symbol:LOC100520816 "Uncharacterized p... 115 0.00057 1
UNIPROTKB|O97581 - symbol:LHX3 "LIM/homeobox protein Lhx3... 117 0.00057 1
ZFIN|ZDB-GENE-980526-167 - symbol:eng2a "engrailed 2a" sp... 114 0.00059 1
WB|WBGene00000428 - symbol:ceh-1 species:6239 "Caenorhabd... 86 0.00060 2
FB|FBgn0004607 - symbol:zfh2 "Zn finger homeodomain 2" sp... 127 0.00060 1
UNIPROTKB|F1SG33 - symbol:LOC100520816 "Uncharacterized p... 115 0.00061 1
UNIPROTKB|Q9UBR4 - symbol:LHX3 "LIM/homeobox protein Lhx3... 117 0.00061 1
MGI|MGI:102673 - symbol:Lhx3 "LIM homeobox protein 3" spe... 117 0.00062 1
UNIPROTKB|G3V8E3 - symbol:Lhx3 "Protein Lhx3" species:101... 117 0.00062 1
UNIPROTKB|G3V9E7 - symbol:Lhx3 "RCG45383, isoform CRA_b" ... 117 0.00062 1
UNIPROTKB|Q2TEA4 - symbol:Lhx3 "LIM homeodomain 3 protein... 117 0.00062 1
WB|WBGene00003000 - symbol:lin-11 species:6239 "Caenorhab... 117 0.00063 1
FB|FBgn0026411 - symbol:Lim1 species:7227 "Drosophila mel... 118 0.00069 1
WB|WBGene00000430 - symbol:ceh-5 species:6239 "Caenorhabd... 97 0.00074 1
UNIPROTKB|F1NL45 - symbol:MIXL1 "Uncharacterized protein"... 94 0.00077 1
UNIPROTKB|F1NL46 - symbol:MIXL1 "Uncharacterized protein"... 94 0.00077 1
UNIPROTKB|P53412 - symbol:LHX3 "LIM/homeobox protein Lhx3... 116 0.00078 1
UNIPROTKB|P36200 - symbol:lhx3 "LIM/homeobox protein Lhx3... 116 0.00078 1
MGI|MGI:1918847 - symbol:Isx "intestine specific homeobox... 112 0.00078 1
TAIR|locus:2046263 - symbol:HB21 "homeobox protein 21" sp... 111 0.00078 1
UNIPROTKB|F1MMA8 - symbol:LOC506388 "Uncharacterized prot... 112 0.00083 1
UNIPROTKB|G1K361 - symbol:PRRX1 "Paired mesoderm homeobox... 107 0.00088 2
WB|WBGene00000584 - symbol:cog-1 species:6239 "Caenorhabd... 112 0.00092 1
UNIPROTKB|F1MXQ1 - symbol:F1MXQ1 "Uncharacterized protein... 108 0.00093 1
UNIPROTKB|J9P9S0 - symbol:PRRX1 "Uncharacterized protein"... 107 0.00095 2
UNIPROTKB|Q643W9 - symbol:Prrx1 "Paired mesoderm homeobox... 107 0.00095 2
UNIPROTKB|H9L1U3 - symbol:H9L1U3 "Uncharacterized protein... 93 0.00099 1
UNIPROTKB|G3V567 - symbol:PAX6 "Paired box protein Pax-6"... 93 0.00099 1
WB|WBGene00044330 - symbol:alr-1 species:6239 "Caenorhabd... 95 0.0010 2
>TAIR|locus:2206880 [details] [associations]
symbol:HDG11 "AT1G73360" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS;IDA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0010091 "trichome branching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
INTERPRO:IPR002913 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:3.30.530.20
InterPro:IPR023393 Pfam:PF01852 SMART:SM00234 PROSITE:PS50848
HOGENOM:HOG000243256 GO:GO:0010091 HSSP:P02836 KO:K09338
EMBL:AC012396 EMBL:BT003979 EMBL:BT004915 IPI:IPI00520147
PIR:B96760 RefSeq:NP_177479.1 UniGene:At.34997
ProteinModelPortal:Q9FX31 SMR:Q9FX31 IntAct:Q9FX31 PaxDb:Q9FX31
PRIDE:Q9FX31 EnsemblPlants:AT1G73360.1 GeneID:843671
KEGG:ath:AT1G73360 TAIR:At1g73360 eggNOG:NOG70408 InParanoid:Q9FX31
OMA:MKLAQRM PhylomeDB:Q9FX31 ProtClustDB:CLSN2679864
Genevestigator:Q9FX31 Uniprot:Q9FX31
Length = 722
Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
Identities = 221/465 (47%), Positives = 312/465 (67%)
Query: 1 GDLGDEQDATNSQ-NKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQ 59
GD G S+ ++ K HRHT QIQ LE+ FK+CPHPDE QR QLS+ELGL +Q
Sbjct: 16 GDGGGSHHHDGSETDRKKKRYHRHTAQQIQRLESSFKECPHPDEKQRNQLSRELGLAPRQ 75
Query: 60 IKFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEER 119
IKFWFQN+RTQ KAQ+ERA+NS L+AEN+++ CEN+AIREALK+ ICP+CGGPP E+
Sbjct: 76 IKFWFQNRRTQLKAQHERADNSALKAENDKIRCENIAIREALKHAICPNCGGPPVS-EDP 134
Query: 120 QRSLQKLQLENSQLKEEHEKVSNLLAKYIGKPICQMN-------SSL---MPSLPGSAIL 169
QKL++EN+ L+EE E++S + +KY+G+PI Q++ S L M SL G
Sbjct: 135 YFDEQKLRIENAHLREELERMSTIASKYMGRPISQLSTLHPMHISPLDLSMTSLTGCGPF 194
Query: 170 EHQNVLPPPILPVHQEMDIGLDLNLQFK---GINDLEQSLMMETATNAMDELIRLMRINE 226
H L +LP M +G + NLQ + I+D+++ +M A AM+EL+RL++ NE
Sbjct: 195 GHGPSLDFDLLP-GSSMAVGPNNNLQSQPNLAISDMDKPIMTGIALTAMEELLRLLQTNE 253
Query: 227 PLWIKPPSSTNIERYVIHPESYEKVFPRA-NHFKTSSARVESSKYSGMVTMNGMQLVEML 285
PLW + T+ R +++ SYE VFPR+ N K + RVE+S+ SG+V MN M LV+M
Sbjct: 254 PLWTR----TDGCRDILNLGSYENVFPRSSNRGKNQNFRVEASRSSGIVFMNAMALVDMF 309
Query: 286 LDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHC 345
+D KW +LFP+I++ ++T+ V+ G+ G G L L++E+M +LSPLV+ RE+ LR+C
Sbjct: 310 MDCVKWTELFPSIIAASKTLAVISSGMGGTHEGALHLLYEEMEVLSPLVATREFCELRYC 369
Query: 346 QQIELGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQT 405
QQ E G W++V+VSY+ P+ +S S +R PSG +IQDM NG S VTW+EH+E ++K
Sbjct: 370 QQTEQGSWIVVNVSYDLPQF-VSHSQSYRFPSGCLIQDMPNGYSKVTWVEHIETEEKELV 428
Query: 406 HRLYRDLICNNCAYGAERWVVTLQRTCERL--LAENSQSIHEVGG 448
H LYR++I A+GA+RWV TLQR CER L+ + S ++GG
Sbjct: 429 HELYREIIHRGIAFGADRWVTTLQRMCERFASLSVPASSSRDLGG 473
>TAIR|locus:2030913 [details] [associations]
symbol:HDG12 "homeodomain GLABROUS 12" species:3702
"Arabidopsis thaliana" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0010091 "trichome
branching" evidence=IGI] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA] [GO:0031507
"heterochromatin assembly" evidence=RCA] [GO:0045787 "positive
regulation of cell cycle" evidence=RCA] [GO:0048451 "petal
formation" evidence=RCA] [GO:0048453 "sepal formation"
evidence=RCA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 INTERPRO:IPR002913 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
GO:GO:0006351 EMBL:AC034106 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:3.30.530.20 InterPro:IPR023393 Pfam:PF01852 SMART:SM00234
PROSITE:PS50848 HOGENOM:HOG000243256 GO:GO:0010091 HSSP:P02836
KO:K09338 eggNOG:NOG70408 ProtClustDB:CLSN2679864 EMBL:AF424554
EMBL:BT001050 IPI:IPI00531481 PIR:D86314 RefSeq:NP_564041.2
UniGene:At.15827 ProteinModelPortal:Q9LMT8 SMR:Q9LMT8 PaxDb:Q9LMT8
PRIDE:Q9LMT8 EnsemblPlants:AT1G17920.1 GeneID:838371
KEGG:ath:AT1G17920 TAIR:At1g17920 InParanoid:Q9LMT8 OMA:CENIAMQ
PhylomeDB:Q9LMT8 Genevestigator:Q9LMT8 Uniprot:Q9LMT8
Length = 687
Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
Identities = 210/456 (46%), Positives = 303/456 (66%)
Query: 3 LGDEQD----ATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLK 58
LGD Q+ T +NK K HRHT HQIQ LE+ F +C HPDE QR QLS+ELGL +
Sbjct: 4 LGDSQNHDSSETEKKNKKKKRFHRHTPHQIQRLESTFNECQHPDEKQRNQLSRELGLAPR 63
Query: 59 QIKFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEE 118
QIKFWFQN+RTQ KAQ+ERA+N L+ EN+++ CEN+AIREA+K+ ICPSCG P E+
Sbjct: 64 QIKFWFQNRRTQKKAQHERADNCALKEENDKIRCENIAIREAIKHAICPSCGDSPVN-ED 122
Query: 119 RQRSLQKLQLENSQLKEEHEKVSNLLAKYIGKPICQMNSSLMPSLPGSAILEHQNV-LPP 177
QKL++EN+QL++E E+VS++ AK++G+PI + L P L H L
Sbjct: 123 SYFDEQKLRIENAQLRDELERVSSIAAKFLGRPISHLPPLLNPMHVSPLELFHTGPSLDF 182
Query: 178 PILPVH-QEMDIGLDLNLQFKGINDLEQSLMMETATNAMDELIRLMRINEPLWIKPPSST 236
+LP M + + ++++++SLM A AM+EL+RL++ NEPLWIK T
Sbjct: 183 DLLPGSCSSMSVPSLPSQPNLVLSEMDKSLMTNIAVTAMEELLRLLQTNEPLWIK----T 238
Query: 237 NIERYVIHPESYEKVFPRANHF--KTSSARVESSKYSGMVTMNGMQLVEMLLDSDKWVDL 294
+ R V++ E+YE +F R++ K ++ +E+S+ SG+V N + LV+ML++S K +L
Sbjct: 239 DGCRDVLNLENYENMFTRSSTSGGKKNNLGMEASRSSGVVFTNAITLVDMLMNSVKLTEL 298
Query: 295 FPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWV 354
FP+IV+ ++T+ V+ G+ GN L LM E++ +LSPLV+ RE+ LR+CQQIE G W
Sbjct: 299 FPSIVASSKTLAVISSGLRGNHGDALHLMIEELQVLSPLVTTREFCVLRYCQQIEHGTWA 358
Query: 355 IVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLIC 414
IV+VSYE+P+ IS S +R PSG +IQDM+NG S VTW+EH E +++ H +++D++
Sbjct: 359 IVNVSYEFPQF-ISQSRSYRFPSGCLIQDMSNGYSKVTWVEHGEFEEQEPIHEMFKDIVH 417
Query: 415 NNCAYGAERWVVTLQRTCERL--LAENSQSIHEVGG 448
A+GAERW+ TLQR CER L E + S ++GG
Sbjct: 418 KGLAFGAERWIATLQRMCERFTNLLEPATSSLDLGG 453
>TAIR|locus:2097770 [details] [associations]
symbol:HDG8 "AT3G03260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 INTERPRO:IPR002913
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:3.30.530.20 InterPro:IPR023393 Pfam:PF01852 SMART:SM00234
PROSITE:PS50848 HOGENOM:HOG000243256 KO:K09338 EMBL:AC012328
EMBL:AK117867 IPI:IPI00538783 RefSeq:NP_186976.2 UniGene:At.41007
ProteinModelPortal:Q9M9P4 SMR:Q9M9P4 PRIDE:Q9M9P4
EnsemblPlants:AT3G03260.1 GeneID:821305 KEGG:ath:AT3G03260
TAIR:At3g03260 InParanoid:Q9M9P4 OMA:LNMESVA PhylomeDB:Q9M9P4
Genevestigator:Q9M9P4 Uniprot:Q9M9P4
Length = 699
Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
Identities = 204/448 (45%), Positives = 291/448 (64%)
Query: 1 GDLGDEQDAT-NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQ 59
G G+EQ + +++ GK TCHRHT QIQ LEA+FK+CPHPDE QR QL +EL L+ Q
Sbjct: 7 GSSGNEQYTSGDAKQNGKRTCHRHTPQQIQRLEAYFKECPHPDERQRNQLCRELKLEPDQ 66
Query: 60 IKFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEER 119
IKFWFQNKRTQ+K Q +R+ N +LR ENE + +N A+ +ALK+V+CP+CGGPPFG EER
Sbjct: 67 IKFWFQNKRTQSKTQEDRSTNVLLRGENETLQSDNEAMLDALKSVLCPACGGPPFGREER 126
Query: 120 QRSLQKLQLENSQLKEEHEKVSNLLAKYI-GKPICQMNSSLMPSLPGSAI-LEHQNVLPP 177
+LQKL+ EN++LK+ +++SN + ++ +P + + + +PSL + + N+ P
Sbjct: 127 GHNLQKLRFENARLKDHRDRISNFVDQHKPNEPTVEDSLAYVPSLDRISYGINGGNMYEP 186
Query: 178 PILPVHQEMDIGLDLNLQFKGINDLEQSLMMETATNAMDELIRLMRINEPLWIKPPSSTN 237
I +Q + + + + SL+ E A +A++EL RL E W+K S
Sbjct: 187 SSSYGPPNFQI-----IQPRPLAETDMSLLSEIAASAVEELKRLFLAEEQFWVK---SCI 238
Query: 238 IERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLLDSDKWVDLFPT 297
E YVI ESYE+ HF +++A VESSK +V + + L++M LD +KW +LFPT
Sbjct: 239 DETYVIDTESYERFSHAVKHFSSTTAHVESSKAVTVVHVEAINLIQMFLDPEKWKELFPT 298
Query: 298 IVSKARTIQVLEPG--INGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVI 355
IV+KA TI VL G I GN N LQ+M EQ+HILSPLV RE+ +R CQ+IE G+W+I
Sbjct: 299 IVNKANTIHVLGSGLPIRGNCN-VLQVMWEQLHILSPLVPAREFMVVRCCQEIEKGIWII 357
Query: 356 VDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICN 415
DVS+ D ++ C++ PSG +IQ + + S V W+EHVEVD K TH++YRDL+
Sbjct: 358 ADVSHRANFD-FGNAACYKRPSGCLIQALPDAHSKVMWIEHVEVDHKLDTHKIYRDLLSG 416
Query: 416 NCAYGAERWVVTLQRTCERLLAENSQSI 443
YGA+RW+VTL+R CER+ + Q++
Sbjct: 417 GSGYGAKRWIVTLERMCERMALSSIQTL 444
>TAIR|locus:2135368 [details] [associations]
symbol:PDF2 "AT4G04890" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0009913 "epidermal cell differentiation"
evidence=IMP] [GO:0048825 "cotyledon development" evidence=IGI]
[GO:0006473 "protein acetylation" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0048481 "ovule development" evidence=RCA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
INTERPRO:IPR002913 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 EMBL:AL161502 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:3.30.530.20 InterPro:IPR023393 Pfam:PF01852 SMART:SM00234
PROSITE:PS50848 HOGENOM:HOG000243256 KO:K09338 HSSP:Q6B2C0
eggNOG:NOG261733 ProtClustDB:CLSN2681990 GO:GO:0048825
GO:GO:0009913 EMBL:AF128393 EMBL:AB056455 EMBL:AF424560
EMBL:AY062575 EMBL:BT000144 IPI:IPI00536198 PIR:E85061
RefSeq:NP_567274.1 UniGene:At.4047 ProteinModelPortal:Q93V99
SMR:Q93V99 IntAct:Q93V99 PaxDb:Q93V99 PRIDE:Q93V99
EnsemblPlants:AT4G04890.1 GeneID:825828 KEGG:ath:AT4G04890
TAIR:At4g04890 InParanoid:Q93V99 OMA:MIPARHM PhylomeDB:Q93V99
Genevestigator:Q93V99 Uniprot:Q93V99
Length = 743
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 184/442 (41%), Positives = 278/442 (62%)
Query: 4 GDE-QDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKF 62
G+E QD + NK K HRHT QIQ LE+FFK+CPHPD+ QR++LS++L L+ Q+KF
Sbjct: 50 GEELQDPSQRPNKKK-RYHRHTQRQIQELESFFKECPHPDDKQRKELSRDLNLEPLQVKF 108
Query: 63 WFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRS 122
WFQNKRTQ KAQ+ER N +L+++N+++ EN +EAL N CP+CGGP I E
Sbjct: 109 WFQNKRTQMKAQSERHENQILKSDNDKLRAENNRYKEALSNATCPNCGGPA-AIGEMSFD 167
Query: 123 LQKLQLENSQLKEEHEKVSNLLAKYIGKPICQMNSSLMPSLPGSAI-LEHQNVLPPPILP 181
Q L++EN++L+EE +++S + AKY+GKP+ + L P ++ LE N
Sbjct: 168 EQHLRIENARLREEIDRISAIAAKYVGKPLGSSFAPLAIHAPSRSLDLEVGNFGNQTGF- 226
Query: 182 VHQEMDIGLDLNLQFKGINDLEQSLMMETATNAMDELIRLMRINEPLWIKPPSSTNIERY 241
V + G D+ ++ ++ +++E A AM+EL+R+ + +PLW+ +S I
Sbjct: 227 VGEMYGTG-DILRSVSIPSETDKPIIVELAVAAMEELVRMAQTGDPLWLSTDNSVEI--- 282
Query: 242 VIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSK 301
++ E Y + FPR K R E+S+ S +V MN + LVE+L+D ++W +F IVS+
Sbjct: 283 -LNEEEYFRTFPRGIGPKPLGLRSEASRQSAVVIMNHINLVEILMDVNQWSCVFSGIVSR 341
Query: 302 ARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYE 361
A T++VL G+ GN NG LQ+M + + SPLV RE YF+R+C+Q G W +VDVS +
Sbjct: 342 ALTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGSWAVVDVSLD 401
Query: 362 WPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGA 421
+ + R PSG +IQ++ NG S VTW+EH+EVDD++ H +Y+ L+ + A+GA
Sbjct: 402 SLRPSTPILRTRRRPSGCLIQELPNGYSKVTWIEHMEVDDRS-VHNMYKPLVQSGLAFGA 460
Query: 422 ERWVVTLQRTCERLLAENSQSI 443
+RWV TL+R CERL + + +I
Sbjct: 461 KRWVATLERQCERLASSMASNI 482
>TAIR|locus:2119048 [details] [associations]
symbol:ATML1 "AT4G21750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;IDA] [GO:0009913 "epidermal cell differentiation"
evidence=IGI] [GO:0048825 "cotyledon development" evidence=IGI]
[GO:0006473 "protein acetylation" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010075
"regulation of meristem growth" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0048481 "ovule development" evidence=RCA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
INTERPRO:IPR002913 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0043565 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:3.30.530.20
InterPro:IPR023393 Pfam:PF01852 SMART:SM00234 PROSITE:PS50848
HOGENOM:HOG000243256 EMBL:AL161555 HSSP:Q6B2C0 EMBL:U37589
EMBL:AL035527 EMBL:AY091104 EMBL:AY150491 EMBL:AK229970
IPI:IPI00535360 PIR:T05850 RefSeq:NP_001031692.1 RefSeq:NP_193906.2
UniGene:At.2706 ProteinModelPortal:Q8RWU4 SMR:Q8RWU4 STRING:Q8RWU4
PRIDE:Q8RWU4 EnsemblPlants:AT4G21750.1 EnsemblPlants:AT4G21750.2
GeneID:828263 KEGG:ath:AT4G21750 TAIR:At4g21750 eggNOG:NOG261733
InParanoid:Q8RWU4 OMA:HAWTTLS PhylomeDB:Q8RWU4
ProtClustDB:CLSN2681990 Genevestigator:Q8RWU4 GO:GO:0048825
GO:GO:0009913 Uniprot:Q8RWU4
Length = 762
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 185/447 (41%), Positives = 280/447 (62%)
Query: 7 QDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQN 66
QD NK K HRHT QIQ LE+FFK+CPHPD+ QR++LS+EL L+ Q+KFWFQN
Sbjct: 54 QDPNQRPNKKK-RYHRHTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVKFWFQN 112
Query: 67 KRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKL 126
KRTQ KAQ+ER N +L++EN+++ EN ++AL N CP+CGGP I E Q L
Sbjct: 113 KRTQMKAQHERHENQILKSENDKLRAENNRYKDALSNATCPNCGGPA-AIGEMSFDEQHL 171
Query: 127 QLENSQLKEEHEKVSNLLAKYIGKPICQMNSSLMPSLPGSAILEHQNV-LPPPILPVHQE 185
++EN++L+EE +++S + AKY+GKP+ NSS P L S + +++ L +
Sbjct: 172 RIENARLREEIDRISAIAAKYVGKPL-MANSSSFPQLSSSHHIPSRSLDLEVGNFGNNNN 230
Query: 186 MDIGL--------DLNLQFKGINDLEQSLMMETATNAMDELIRLMRINEPLWIKPPSSTN 237
G D+ ++ ++ +++E A AM+EL+R+ + +PLW+ S +
Sbjct: 231 SHTGFVGEMFGSSDILRSVSIPSEADKPMIVELAVAAMEELVRMAQTGDPLWVS--SDNS 288
Query: 238 IERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLLDSDKWVDLFPT 297
+E +++ E Y + FPR K R E+S+ S +V MN + L+E+L+D ++W +F
Sbjct: 289 VE--ILNEEEYFRTFPRGIGPKPIGLRSEASRESTVVIMNHINLIEILMDVNQWSSVFCG 346
Query: 298 IVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVD 357
IVS+A T++VL G+ GN NG LQ+M + + SPLV RE YF+R+C+Q G+W +VD
Sbjct: 347 IVSRALTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGIWAVVD 406
Query: 358 VSYEWPKDN-ISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNN 416
VS + + + I+ S R PSG +IQ++ NG S VTW+EH+EVDD++ H +Y+ L+
Sbjct: 407 VSLDSLRPSPITRSR--RRPSGCLIQELQNGYSKVTWVEHIEVDDRS-VHNMYKPLVNTG 463
Query: 417 CAYGAERWVVTLQRTCERLLAENSQSI 443
A+GA+RWV TL R CERL + + +I
Sbjct: 464 LAFGAKRWVATLDRQCERLASSMASNI 490
>TAIR|locus:2023932 [details] [associations]
symbol:HDG10 "AT1G34650" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 INTERPRO:IPR002913
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:3.30.530.20 InterPro:IPR023393 Pfam:PF01852 SMART:SM00234
PROSITE:PS50848 HOGENOM:HOG000243256 EMBL:AC007894 EMBL:AC023279
IPI:IPI00526139 PIR:B86470 RefSeq:NP_174724.1 UniGene:At.51941
ProteinModelPortal:Q9S9Z0 SMR:Q9S9Z0 EnsemblPlants:AT1G34650.1
GeneID:840369 KEGG:ath:AT1G34650 TAIR:At1g34650 InParanoid:Q9S9Z0
PhylomeDB:Q9S9Z0 ProtClustDB:CLSN2679643 Genevestigator:Q9S9Z0
Uniprot:Q9S9Z0
Length = 708
Score = 503 (182.1 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
Identities = 108/245 (44%), Positives = 156/245 (63%)
Query: 196 FKGINDLEQSLMMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRA 255
F+ ++ LE++ M E A NA+ E++ L+++ +WIK ST R +I P +Y++ F +
Sbjct: 214 FQQLSQLEKNRMFEIAKNAVAEVMSLIQMEHSMWIK---STIDGRAIIDPGNYKRYFTKN 270
Query: 256 NHFKTSSA---RVESSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGI 312
+H K+ SA ESS +V M+ LV+M L+++KW LFPTIV++A+TI VL+ +
Sbjct: 271 SHLKSRSALQSHHESSMEVVVVQMDARNLVDMFLNTEKWARLFPTIVTEAKTIHVLD-SM 329
Query: 313 NGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWPKDNISSSH- 371
+ R ++++EQ+HILSPLV PRE+ LR CQQ++ LW+I DVS S+
Sbjct: 330 DHPRQTFSRVVYEQLHILSPLVLPREFIILRTCQQMKEDLWLIADVSCYLQNVEFESTAP 389
Query: 372 -CWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQR 430
C + PSG +IQ + +G S VTW+EHVEV DK H+LYRDL+ YGA RW TLQR
Sbjct: 390 ICTKRPSGVLIQALPHGRSKVTWIEHVEVTDKVWPHQLYRDLLYGGFGYGARRWTATLQR 449
Query: 431 TCERL 435
CERL
Sbjct: 450 MCERL 454
Score = 390 (142.3 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
Identities = 77/164 (46%), Positives = 110/164 (67%)
Query: 2 DLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
D +++ +S N+ H+ HQ+Q LEAFF +CPHPD++QRRQL EL L KQIK
Sbjct: 7 DSSSDEEGIDSNNR-----RHHSNHQVQRLEAFFHECPHPDDSQRRQLGNELNLKHKQIK 61
Query: 62 FWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQR 121
FWFQN+RTQ + NE+A+N LR EN ++ C N A+ +AL+ V+CP CGGP G EE+
Sbjct: 62 FWFQNRRTQARIHNEKADNIALRVENMKIRCVNEAMEKALETVLCPPCGGP-HGKEEQLC 120
Query: 122 SLQKLQLENSQLKEEHEKVSNLLAKYIGKPICQMNSSLMPSLPG 165
+LQKL+ +N LK E+E++S+ L K+ G I +++ +P L G
Sbjct: 121 NLQKLRTKNVILKTEYERLSSYLTKHGGYSIPSVDA--LPDLHG 162
>TAIR|locus:2167230 [details] [associations]
symbol:HDG9 "AT5G17320" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;IDA] InterPro:IPR001356 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
INTERPRO:IPR002913 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0043565 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:3.30.530.20
InterPro:IPR023393 Pfam:PF01852 SMART:SM00234 PROSITE:PS50848
HOGENOM:HOG000243256 EMBL:AB005238 ProtClustDB:CLSN2679643
IPI:IPI00529269 RefSeq:NP_197234.1 UniGene:At.54882
ProteinModelPortal:Q9FFI0 SMR:Q9FFI0 EnsemblPlants:AT5G17320.1
GeneID:831598 KEGG:ath:AT5G17320 TAIR:At5g17320 eggNOG:KOG0493
InParanoid:Q9FFI0 PhylomeDB:Q9FFI0 Genevestigator:Q9FFI0
Uniprot:Q9FFI0
Length = 718
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 197/461 (42%), Positives = 284/461 (61%)
Query: 5 DEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWF 64
++ DA + K HRHT QI LE +FK+CPHPDE QRR L +EL L KQIKFWF
Sbjct: 15 NDVDANTNNRHEKKGYHRHTNEQIHRLETYFKECPHPDEFQRRLLGEELNLKPKQIKFWF 74
Query: 65 QNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQ 124
QNKRTQ K+ NE+A+N+ LRAEN ++ EN ++ +AL NV+CP CGG G E++ R LQ
Sbjct: 75 QNKRTQAKSHNEKADNAALRAENIKIRRENESMEDALNNVVCPPCGGRGPGREDQLRHLQ 134
Query: 125 KLQLENSQLKEEHEKVSNLLAKYIGKPICQMNSSLM---PSLPGSAILEH-------QNV 174
KL+ +N+ LK+E+E+VSN L +Y G + + ++ PS S N
Sbjct: 135 KLRAQNAYLKDEYERVSNYLKQYGGHSMHNVEATPYLHGPSNHASTSKNRPALYGTSSNR 194
Query: 175 LPPP--IL--PVHQ-EMDIGLD------LNLQ-FKGINDLEQSLMMETATNAMDELIRLM 222
LP P I P + M+ L +Q F+ ++ LE+ M+E A A+ E++ L+
Sbjct: 195 LPEPSSIFRGPYTRGNMNTTAPPQPRKPLEMQNFQPLSQLEKIAMLEAAEKAVSEVLSLI 254
Query: 223 RINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLV 282
++++ +W K SS + +R VI P YEK F + N ++ R ESSK +V M+ L+
Sbjct: 255 QMDDTMWKK--SSID-DRLVIDPGLYEKYFTKTN----TNGRPESSKDVVVVQMDAGNLI 307
Query: 283 EMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFL 342
++ L ++KW LFPTIV++A+TI VL+ ++ ++++EQ+HILSPLV PRE+ L
Sbjct: 308 DIFLTAEKWARLFPTIVNEAKTIHVLD-SVDHRGKTFSRVIYEQLHILSPLVPPREFMIL 366
Query: 343 RHCQQIELGLWVIVDVSYEWP--KDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVD 400
R CQQIE +W+I DVS P + ++S C + PSG +IQ + +G S VTW+EHV V+
Sbjct: 367 RTCQQIEDNVWMIADVSCHLPNIEFDLSFPICTKRPSGVLIQALPHGFSKVTWIEHVVVN 426
Query: 401 D-KTQTHRLYRDLICNNCAYGAERWVVTLQRTCERLLAENS 440
D + + H+LYRDL+ YGA RW VTL+RTCERL+ S
Sbjct: 427 DNRVRPHKLYRDLLYGGFGYGARRWTVTLERTCERLIFSTS 467
>TAIR|locus:2098866 [details] [associations]
symbol:HDG1 "AT3G61150" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006473 "protein acetylation" evidence=RCA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
INTERPRO:IPR002913 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043565 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL137898 Pfam:PF01852
SMART:SM00234 PROSITE:PS50848 HOGENOM:HOG000243256
ProtClustDB:CLSN2685237 KO:K09338 EMBL:AJ224338 EMBL:AY050866
EMBL:AY096757 IPI:IPI00541112 PIR:T47907 RefSeq:NP_191674.1
UniGene:At.21209 HSSP:Q8C172 ProteinModelPortal:Q9M2E8 SMR:Q9M2E8
IntAct:Q9M2E8 PaxDb:Q9M2E8 PRIDE:Q9M2E8 EnsemblPlants:AT3G61150.1
GeneID:825287 KEGG:ath:AT3G61150 TAIR:At3g61150 eggNOG:NOG267226
InParanoid:Q9M2E8 OMA:HTEYDEN PhylomeDB:Q9M2E8
Genevestigator:Q9M2E8 Uniprot:Q9M2E8
Length = 808
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 189/457 (41%), Positives = 277/457 (60%)
Query: 4 GDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFW 63
GD+ D ++ K K HRHT QIQ LE+ FK+C HPDE QR LS+ L LD +Q+KFW
Sbjct: 98 GDDLDTSDRPLKKKKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFW 157
Query: 64 FQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSL 123
FQN+RTQ K Q ER N++LR EN+++ EN+++REA++N +C +CGGP I E
Sbjct: 158 FQNRRTQMKTQIERHENALLRQENDKLRAENMSVREAMRNPMCGNCGGPAV-IGEISMEE 216
Query: 124 QKLQLENSQLKEEHEKVSNLLAKYIGKPICQMN---SSLMPSL---PGSAILEHQNVLPP 177
Q L++ENS+LK+E ++V L K++G+ + S+L+ + G + L
Sbjct: 217 QHLRIENSRLKDELDRVCALTGKFLGRSNGSHHIPDSALVLGVGVGSGGCNVGGGFTLSS 276
Query: 178 PILP-VHQEMDI------GL--DLNLQFK-GINDLEQ-SLMMETATNAMDELIRLMRINE 226
P+LP +I GL +N Q ++D +Q S ++ A AMDEL+++ + E
Sbjct: 277 PLLPQASPRFEISNGTGSGLVATVNRQQPVSVSDFDQRSRYLDLALAAMDELVKMAQTRE 336
Query: 227 PLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLL 286
PLW++ S + E V++ E Y+ F R K E+SK +G V +N + LVE L+
Sbjct: 337 PLWVRS-SDSGFE--VLNQEEYDTSFSRCVGPKQDGFVSEASKEAGTVIINSLALVETLM 393
Query: 287 DSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQ 346
DS++W ++FP++VS+ T +++ G+ G RNG L LMH ++ +LSPLV R+ FLR C+
Sbjct: 394 DSERWAEMFPSMVSRTSTTEIISSGMGG-RNGALHLMHAELQLLSPLVPVRQVSFLRFCK 452
Query: 347 QIELGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTH 406
Q G+W +VDVS + ++ SSS C RLPSG ++QDM NG S VTW+EH E D+ H
Sbjct: 453 QHAEGVWAVVDVSIDSIREG-SSSSCRRLPSGCLVQDMANGYSKVTWIEHTEYDEN-HIH 510
Query: 407 RLYRDLICNNCAYGAERWVVTLQRTCERLLAENSQSI 443
RLYR L+ A+GA RW+ LQR CE L S ++
Sbjct: 511 RLYRPLLRCGLAFGAHRWMAALQRQCECLTILMSSTV 547
>TAIR|locus:2127008 [details] [associations]
symbol:ANL2 "ANTHOCYANINLESS 2" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0043481 "anthocyanin accumulation in tissues in
response to UV light" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048765 "root hair cell differentiation"
evidence=IMP] [GO:0006473 "protein acetylation" evidence=RCA]
[GO:0042335 "cuticle development" evidence=IMP] InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 INTERPRO:IPR002913 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0043565 GO:GO:0003700
GO:GO:0006351 GO:GO:0043481 GO:GO:0042335 Gene3D:1.10.10.60
SUPFAM:SSF46689 Pfam:PF01852 SMART:SM00234 PROSITE:PS50848
EMBL:AF058919 EMBL:AL161472 EMBL:U85254 EMBL:AF077335 EMBL:AK226968
IPI:IPI00538459 PIR:T01237 RefSeq:NP_567183.2 UniGene:At.24442
ProteinModelPortal:Q0WV12 SMR:Q0WV12 STRING:Q0WV12 PaxDb:Q0WV12
PRIDE:Q0WV12 EnsemblPlants:AT4G00730.1 GeneID:828022
KEGG:ath:AT4G00730 TAIR:At4g00730 eggNOG:euNOG18333
HOGENOM:HOG000243256 InParanoid:Q0WV12 OMA:MAGTING PhylomeDB:Q0WV12
ProtClustDB:CLSN2685237 Genevestigator:Q0WV12 GO:GO:0048765
Uniprot:Q0WV12
Length = 802
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 187/455 (41%), Positives = 281/455 (61%)
Query: 1 GDLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQI 60
G G++QDA + + K HRHT QIQ LE+ FK+CPHPDE QR +LSK L L+ +Q+
Sbjct: 120 GISGEDQDAADKPPRKK-RYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQV 178
Query: 61 KFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQ 120
KFWFQN+RTQ K Q ER N++LR EN+++ EN++IREA++N IC +CGGP + +
Sbjct: 179 KFWFQNRRTQMKTQLERHENALLRQENDKLRAENMSIREAMRNPICTNCGGPAM-LGDVS 237
Query: 121 RSLQKLQLENSQLKEEHEKVSNLLAKYIGKPICQ-MNSSLMPSLPGSAILEHQNVLPPPI 179
L++EN++LK+E ++V NL K++G NSSL ++ G+ PP
Sbjct: 238 LEEHHLRIENARLKDELDRVCNLTGKFLGHHHNHHYNSSLELAV-GTNNNGGHFAFPPDF 296
Query: 180 ------LPVHQEMDIGLDLNLQFKGINDLEQSLMMETATNAMDELIRLMRINEPLWIKPP 233
LP Q+ ++ GI+ ++S+++E A AMDEL++L + EPLW+K
Sbjct: 297 GGGGGCLPPQQQQSTVIN------GID--QKSVLLELALTAMDELVKLAQSEEPLWVK-- 346
Query: 234 SSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLLDSDKWVD 293
S + ER ++ + Y + F K + E+S+ SGMV +N + LVE L+DS++W +
Sbjct: 347 -SLDGERDELNQDEYMRTFSST---KPTGLATEASRTSGMVIINSLALVETLMDSNRWTE 402
Query: 294 LFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLW 353
+FP V++A T V+ G+ G NG LQLM+ ++ +LSPLV R FLR C+Q G+W
Sbjct: 403 MFPCNVARATTTDVISGGMAGTINGALQLMNAELQVLSPLVPVRNVNFLRFCKQHAEGVW 462
Query: 354 VIVDVSYEWPKDNISSSHCWR-LPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDL 412
+VDVS + ++N + R LPSG ++QD++NG S VTW+EH E D+ Q H+LYR L
Sbjct: 463 AVVDVSIDPVRENSGGAPVIRRLPSGCVVQDVSNGYSKVTWVEHAEYDEN-QIHQLYRPL 521
Query: 413 ICNNCAYGAERWVVTLQRTCERL--LAENSQSIHE 445
+ + +G++RW+ TLQR CE L L +S + H+
Sbjct: 522 LRSGLGFGSQRWLATLQRQCECLAILISSSVTSHD 556
>TAIR|locus:2207235 [details] [associations]
symbol:HDG2 "AT1G05230" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0010090 "trichome morphogenesis" evidence=IMP]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
INTERPRO:IPR002913 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0010090 GO:GO:0043565 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:3.30.530.20
InterPro:IPR023393 Pfam:PF01852 SMART:SM00234 PROSITE:PS50848
HOGENOM:HOG000243256 eggNOG:NOG261733 ProtClustDB:CLSN2681990
EMBL:AC000098 EMBL:AY037177 EMBL:AY091690 IPI:IPI00530516
PIR:G86186 RefSeq:NP_001184911.1 RefSeq:NP_172015.1
RefSeq:NP_849596.1 UniGene:At.19179 UniGene:At.50922
ProteinModelPortal:Q94C37 SMR:Q94C37 STRING:Q94C37 PaxDb:Q94C37
PRIDE:Q94C37 EnsemblPlants:AT1G05230.1 EnsemblPlants:AT1G05230.2
EnsemblPlants:AT1G05230.4 GeneID:839256 KEGG:ath:AT1G05230
TAIR:At1g05230 InParanoid:Q94C37 OMA:VGVITNQ PhylomeDB:Q94C37
Genevestigator:Q94C37 Uniprot:Q94C37
Length = 721
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 167/402 (41%), Positives = 245/402 (60%)
Query: 1 GDLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQI 60
G G++QD + K + HRHT QIQ +EAFFK+CPHPD+ QR+QLS+EL L+ Q+
Sbjct: 51 GGSGNDQDPLHPNKKKRY--HRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQV 108
Query: 61 KFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQ 120
KFWFQNKRTQ K +ER NS LRAENE++ +NL REAL N CP+CGGP I E
Sbjct: 109 KFWFQNKRTQMKNHHERHENSHLRAENEKLRNDNLRYREALANASCPNCGGPT-AIGEMS 167
Query: 121 RSLQKLQLENSQLKEEHEKVSNLLAKYIGKPICQMNSSLMPSLPGSAILEHQNVLPPPIL 180
+L+LEN++L+EE +++S + AKY+GKP+ P LP LE L +
Sbjct: 168 FDEHQLRLENARLREEIDRISAIAAKYVGKPVSNYPLMSPPPLPPRP-LE----LAMGNI 222
Query: 181 PVHQEMDIGLDLNLQFKGINDLEQSLMMETATNAMDELIRLMRINEPLWIKPPSSTNIER 240
+ DL + ++ ++++ + AM+EL+R+++++EPLW +
Sbjct: 223 GGEAYGNNPNDLLKSITAPTESDKPVIIDLSVAAMEELMRMVQVDEPLW---------KS 273
Query: 241 YVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVS 300
V+ E Y + FPR + + R E+S+ S +V MN + +VE+L+D ++W +F +VS
Sbjct: 274 LVLDEEEYARTFPRGIGPRPAGYRSEASRESAVVIMNHVNIVEILMDVNQWSTIFAGMVS 333
Query: 301 KARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSY 360
+A T+ VL G+ GN NG LQ+M + + SPLV RE YF R+C+Q G W +VD+S
Sbjct: 334 RAMTLAVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRETYFARYCKQQGDGSWAVVDISL 393
Query: 361 EWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDK 402
+ + N + C R SG +IQ++ NG S VTW+EHVEVDD+
Sbjct: 394 DSLQPN-PPARCRRRASGCLIQELPNGYSKVTWVEHVEVDDR 434
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 137/415 (33%), Positives = 223/415 (53%)
Query: 41 PDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIRE- 99
P + +++ L+L+ ++ F + +T+ +N R EN + EN +R
Sbjct: 87 PHPDDKQRKQLSRELNLEPLQVKFWFQNKRTQMKNHHE-----RHENSHLRAENEKLRND 141
Query: 100 --ALKNVIC-PSCG--GPPFGIEERQRSLQKLQLENSQLKEEHEKVSNLLAKYIGKPICQ 154
+ + SC G P I E +L+LEN++L+EE +++S + AKY+GKP+
Sbjct: 142 NLRYREALANASCPNCGGPTAIGEMSFDEHQLRLENARLREEIDRISAIAAKYVGKPVSN 201
Query: 155 MNSSLMPSLPGSAILEHQNVLPPPILPVHQEMDIGLDLNLQFKGINDLEQSLMMETATNA 214
P LP LE L + + DL + ++ ++++ + A
Sbjct: 202 YPLMSPPPLPPRP-LE----LAMGNIGGEAYGNNPNDLLKSITAPTESDKPVIIDLSVAA 256
Query: 215 MDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMV 274
M+EL+R+++++EPLW + V+ E Y + FPR + + R E+S+ S +V
Sbjct: 257 MEELMRMVQVDEPLW---------KSLVLDEEEYARTFPRGIGPRPAGYRSEASRESAVV 307
Query: 275 TMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLV 334
MN + +VE+L+D ++W +F +VS+A T+ VL G+ GN NG LQ+M + + SPLV
Sbjct: 308 IMNHVNIVEILMDVNQWSTIFAGMVSRAMTLAVLSTGVAGNYNGALQVMSAEFQVPSPLV 367
Query: 335 SPREYYFLRHCQQIELGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWL 394
RE YF R+C+Q G W +VD+S + + N + C R SG +IQ++ NG S VTW+
Sbjct: 368 PTRETYFARYCKQQGDGSWAVVDISLDSLQPN-PPARCRRRASGCLIQELPNGYSKVTWV 426
Query: 395 EHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCERLLAENSQSIH--EVG 447
EHVEVDD+ H LY+ ++ A+GA+RWV L R CERL + + +I EVG
Sbjct: 427 EHVEVDDRG-VHNLYKHMVSTGHAFGAKRWVAILDRQCERLASVMATNISSGEVG 480
>TAIR|locus:2062540 [details] [associations]
symbol:HDG3 "AT2G32370" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0048825 "cotyledon development" evidence=IGI]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
INTERPRO:IPR002913 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0043565 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:3.30.530.20
InterPro:IPR023393 Pfam:PF01852 SMART:SM00234 PROSITE:PS50848
HOGENOM:HOG000243256 KO:K09338 eggNOG:NOG261733 GO:GO:0048825
EMBL:AC005700 EMBL:EF988635 IPI:IPI00527257 PIR:C84732
RefSeq:NP_180796.2 UniGene:At.38083 ProteinModelPortal:Q9ZV65
SMR:Q9ZV65 PaxDb:Q9ZV65 PRIDE:Q9ZV65 EnsemblPlants:AT2G32370.1
GeneID:817798 KEGG:ath:AT2G32370 TAIR:At2g32370 InParanoid:A7LBA8
PhylomeDB:Q9ZV65 Genevestigator:Q9ZV65 Uniprot:Q9ZV65
Length = 725
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 176/451 (39%), Positives = 255/451 (56%)
Query: 3 LGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKF 62
LG+ Q + + K +RHT QI +EAFF++CPHPD+ QR LS +LGLD QIKF
Sbjct: 59 LGNNQAPRHKKKK----YNRHTQLQISEMEAFFRECPHPDDKQRYDLSAQLGLDPVQIKF 114
Query: 63 WFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRS 122
WFQNKRTQ K Q ER NS LR N + EN +REA+ +CP CGG I E
Sbjct: 115 WFQNKRTQNKNQQERFENSELRNLNNHLRSENQRLREAIHQALCPKCGGQT-AIGEMTFE 173
Query: 123 LQKLQLENSQLKEEHEKVSNLLAKYIGKPICQMNSSLMPSLPGSAILEHQNVLPP-PILP 181
L++ N++L EE +++S + A+ I + L G + H V PP P P
Sbjct: 174 EHHLRILNARLTEEIKQLS-VTAEKISR------------LTGIPVRSHPRVSPPNP--P 218
Query: 182 VHQEMDIGLDLNL-----QFKGINDLE-QSLMMETATNAMDELIRLMRINEPLWIKPPSS 235
+ E +G N+ + G D + ++ME A AM+EL+ + ++ EPLW+ +
Sbjct: 219 PNFEFGMGSKGNVGNHSRETTGPADANTKPIIMELAFGAMEELLVMAQVAEPLWMGGFNG 278
Query: 236 TNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLLDSDKWVDLF 295
T++ ++ + YEK F + R E+S+ + +V M +VEML+ + W +F
Sbjct: 279 TSL---ALNLDEYEKTFRTGLGPRLGGFRTEASRETALVAMCPTGIVEMLMQENLWSTMF 335
Query: 296 PTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVI 355
IV +ART + + GN NG LQ+M + +LSPLV+ RE YF+R+C+Q GLW +
Sbjct: 336 AGIVGRARTHEQIMADAAGNFNGNLQIMSAEYQVLSPLVTTRESYFVRYCKQQGEGLWAV 395
Query: 356 VDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICN 415
VD+S + NI+ C R PSG +IQ+M +G S VTW+EHVEVDD ++ ++ LIC
Sbjct: 396 VDISIDHLLPNINLK-CRRRPSGCLIQEMHSGYSKVTWVEHVEVDD-AGSYSIFEKLICT 453
Query: 416 NCAYGAERWVVTLQRTCERL---LAENSQSI 443
A+ A RWV TL R CER+ L+ + QS+
Sbjct: 454 GQAFAANRWVGTLVRQCERISSILSTDFQSV 484
>TAIR|locus:2145116 [details] [associations]
symbol:HDG7 "AT5G52170" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;IDA] [GO:0006473 "protein acetylation" evidence=RCA]
InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 INTERPRO:IPR002913 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0043565 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Pfam:PF01852
SMART:SM00234 PROSITE:PS50848 eggNOG:euNOG18333
HOGENOM:HOG000243256 HSSP:Q6B2C0 EMBL:AB025603 IPI:IPI00525258
RefSeq:NP_200030.1 UniGene:At.55500 ProteinModelPortal:Q9LTK3
SMR:Q9LTK3 EnsemblPlants:AT5G52170.1 GeneID:835293
KEGG:ath:AT5G52170 TAIR:At5g52170 InParanoid:Q9LTK3
PhylomeDB:Q9LTK3 Genevestigator:Q9LTK3 Uniprot:Q9LTK3
Length = 682
Score = 387 (141.3 bits), Expect = 7.1e-70, Sum P(2) = 7.1e-70
Identities = 75/178 (42%), Positives = 118/178 (66%)
Query: 259 KTSSARVESSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNG 318
K S S+ +G+V +N + LVE L+D++KW ++F IV+ A T++V+ G +G+RNG
Sbjct: 249 KGSMNHFPGSRETGLVLINSLALVETLMDTNKWAEMFECIVAVASTLEVISNGSDGSRNG 308
Query: 319 CLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWPK--DNISSSHCWRL- 375
+ LM + ++SPLV ++ FLR+C+Q GLW +VDVSY+ + +N+ S ++
Sbjct: 309 SILLMQAEFQVMSPLVPIKQKKFLRYCKQHGDGLWAVVDVSYDINRGNENLKSYGGSKMF 368
Query: 376 PSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCE 433
PSG +IQD+ NGCS VTW+EH E ++ + TH LY+ L+ ++ GA +W+ TLQR CE
Sbjct: 369 PSGCIIQDIGNGCSKVTWIEHSEYEE-SHTHSLYQPLLSSSVGLGATKWLATLQRQCE 425
Score = 352 (129.0 bits), Expect = 7.1e-70, Sum P(2) = 7.1e-70
Identities = 70/152 (46%), Positives = 101/152 (66%)
Query: 1 GDLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQI 60
GD D+Q+ + K K HRHT++QIQ LE+FFK+CPHP+E QR +L K+L L+ KQI
Sbjct: 43 GD-EDKQEQRPKKKKRKTKYHRHTSYQIQELESFFKECPHPNEKQRLELGKKLTLESKQI 101
Query: 61 KFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQ 120
KFWFQN+RTQ K Q ER N +L+ ENE++ EN ++E+++ +C CGG E
Sbjct: 102 KFWFQNRRTQMKTQLERHENVILKQENEKLRLENSFLKESMRGSLCIDCGGAVIPGEVSF 161
Query: 121 RSLQKLQLENSQLKEEHEKVSNLLAKYIGKPI 152
Q L++EN++LKEE +++ L ++IG I
Sbjct: 162 EQHQ-LRIENAKLKEELDRICALANRFIGGSI 192
Score = 63 (27.2 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 205 SLM-METATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSA 263
SLM M+ A AMDEL++L + LW ++ + P S E N
Sbjct: 218 SLMFMDLAMEAMDELLKLAELETSLWSSKSEKGSMNHF---PGSRETGLVLINSLALVET 274
Query: 264 RVESSKYSGM 273
++++K++ M
Sbjct: 275 LMDTNKWAEM 284
Score = 49 (22.3 bits), Expect = 5.3e-38, Sum P(2) = 5.3e-38
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 111 GPPFGIEERQRSLQKLQLENSQLKEEHEKVSNLLAKYIGKPICQMNSSLMPSLPGSAILE 170
G +E +Q Q +Q+K + E+ N++ K + + NS L S+ GS ++
Sbjct: 91 GKKLTLESKQIKFW-FQNRRTQMKTQLERHENVILKQENEKLRLENSFLKESMRGSLCID 149
>TAIR|locus:2129396 [details] [associations]
symbol:HDG4 "AT4G17710" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006944 "cellular membrane fusion" evidence=RCA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
INTERPRO:IPR002913 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0043565 GO:GO:0003700 GO:GO:0006351
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 Pfam:PF01852
SMART:SM00234 PROSITE:PS50848 HOGENOM:HOG000243256 KO:K09338
HSSP:Q6B2C0 EMBL:Z97344 eggNOG:NOG264325 EMBL:AY133700
IPI:IPI00546205 PIR:B71447 RefSeq:NP_193506.2 UniGene:At.32974
ProteinModelPortal:Q8L7H4 SMR:Q8L7H4 IntAct:Q8L7H4 PaxDb:Q8L7H4
PRIDE:Q8L7H4 EnsemblPlants:AT4G17710.1 GeneID:827492
KEGG:ath:AT4G17710 TAIR:At4g17710 InParanoid:Q8L7H4
PhylomeDB:Q8L7H4 Genevestigator:Q8L7H4 Uniprot:Q8L7H4
Length = 709
Score = 437 (158.9 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 115/333 (34%), Positives = 183/333 (54%)
Query: 125 KLQLENSQLKEEHEKV-SN---LLAKYIGKPICQMNSSLMPSLPG-SAILEHQNVLPPPI 179
KL+ EN LK E + + SN L G + N+ L L +I+ +N P P
Sbjct: 154 KLKAENETLKTESQNIQSNFQCLFCSTCGHNLRLENARLRQELDRLRSIVSMRN--PSPS 211
Query: 180 LPVHQEMDIGLDLNLQFKGINDLEQSLMMETATNAMDELIRLMRINEPLWIKPPSSTNIE 239
+ E + + N+ I + E+++ ME A + EL ++ INEPLW K + E
Sbjct: 212 QEITPETNKNNNDNML---IAEEEKAIDMELAVSCARELAKMCDINEPLWNK--KRLDNE 266
Query: 240 RYVIHPESYEKVF--PRANHFKTSSARVESSKYSGMVTMNGMQLVEMLLDSDKWVDLFPT 297
++ E Y+K+F P N R E+S+ + ++ +N + LV+ LD+DKW ++F
Sbjct: 267 SVCLNEEEYKKMFLWPLMND--DDRFRREASRANAVIMLNCITLVKAFLDADKWSEMFFP 324
Query: 298 IVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQ-IELGLWVIV 356
IVS A+T Q++ G +G +G L LM ++ ++SPLV RE YFLR+ +Q E G W++V
Sbjct: 325 IVSSAKTAQIISSGASGP-SGTLLLMFAELQVVSPLVPTREAYFLRYVEQNAEEGKWMVV 383
Query: 357 DVSYEW--PKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLIC 414
D + P ++ R PSG +IQ M NG S VTW+EHVEV++K + R+ +
Sbjct: 384 DFPIDRIKPASATTTDQYRRKPSGCIIQAMRNGYSQVTWVEHVEVEEKHVQDEVVREFVE 443
Query: 415 NNCAYGAERWVVTLQRTCERLLAENSQSIHEVG 447
+ A+GAERW+ L+R CER+ + + +I ++G
Sbjct: 444 SGVAFGAERWLSVLKRQCERMASLMATNITDLG 476
Score = 255 (94.8 bits), Expect = 7.8e-19, P = 7.8e-19
Identities = 53/125 (42%), Positives = 80/125 (64%)
Query: 21 HRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERANN 80
HRHT QIQ +EA FK+ HPD R +LSK+LGL Q+KFWFQNKRTQ KAQ R++N
Sbjct: 93 HRHTASQIQQMEALFKENAHPDTKTRLRLSKKLGLSPIQVKFWFQNKRTQIKAQQSRSDN 152
Query: 81 SVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKV 140
+ L+AENE + E+ I+ + + C +CG L+LEN++L++E +++
Sbjct: 153 AKLKAENETLKTESQNIQSNFQCLFCSTCG-------------HNLRLENARLRQELDRL 199
Query: 141 SNLLA 145
++++
Sbjct: 200 RSIVS 204
>TAIR|locus:2131814 [details] [associations]
symbol:FWA "AT4G25530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006349 "regulation of gene expression by genetic
imprinting" evidence=IEP] [GO:0031047 "gene silencing by RNA"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009909 "regulation of flower development" evidence=IEP;RCA]
[GO:0042803 "protein homodimerization activity" evidence=IPI]
[GO:0007155 "cell adhesion" evidence=RCA] [GO:0010090 "trichome
morphogenesis" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048573 "photoperiodism, flowering" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 INTERPRO:IPR002913 GO:GO:0007275
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 EMBL:AL022197 EMBL:AL161563
Gene3D:1.10.10.60 SUPFAM:SSF46689 Pfam:PF01852 SMART:SM00234
PROSITE:PS50848 GO:GO:0009911 GO:GO:0031047 HOGENOM:HOG000243256
GO:GO:0006349 EMBL:AF178688 EMBL:AF243535 IPI:IPI00545721
PIR:A85295 RefSeq:NP_567722.1 UniGene:At.2139
ProteinModelPortal:Q9FVI6 SMR:Q9FVI6 IntAct:Q9FVI6 STRING:Q9FVI6
PaxDb:Q9FVI6 PRIDE:Q9FVI6 EnsemblPlants:AT4G25530.1 GeneID:828658
KEGG:ath:AT4G25530 TAIR:At4g25530 eggNOG:NOG295539
InParanoid:Q9FVI6 PhylomeDB:Q9FVI6 Genevestigator:Q9FVI6
GermOnline:AT4G25530 Uniprot:Q9FVI6
Length = 686
Score = 406 (148.0 bits), Expect = 2.8e-37, P = 2.8e-37
Identities = 98/261 (37%), Positives = 148/261 (56%)
Query: 194 LQFKG---INDLEQSLMMETATNAMDELIRLMRINEPLWIKPP--SSTNIERYVIHPESY 248
L F G ++ E S+ + A A+ ELI L ++ P W+ P S + + I+ E Y
Sbjct: 197 LDFSGGTRTSEKETSIFLNLAITALRELITLGEVDCPFWMIDPIVRSKGVSK--IY-EKY 253
Query: 249 EKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVL 308
F N K VE+S+ G+V M + LV+ L+D+ KWV++F IV A T +VL
Sbjct: 254 RSSFN--NVTKPPGQIVEASRAKGLVPMTCVTLVKTLMDTGKWVNVFAPIVPVASTHKVL 311
Query: 309 EPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWPKDN-- 366
G G ++G LQ + + ++SPLV R+ F+R+C++I GLWV+VDV+ P N
Sbjct: 312 STGSGGTKSGSLQQIQAEFQVISPLVPKRKVTFIRYCKEIRQGLWVVVDVT---PTQNPT 368
Query: 367 ISSSHCW-RLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWV 425
+ C RLPSG +I D++NG S VTW+E E ++ + H+LY+ LI GA+RW+
Sbjct: 369 LLPYGCSKRLPSGLIIDDLSNGYSQVTWIEQAEYNE-SHIHQLYQPLIGYGIGLGAKRWL 427
Query: 426 VTLQRTCERLLAENSQSIHEV 446
TLQR CE L +S ++ E+
Sbjct: 428 ATLQRHCESLSTLSSTNLTEI 448
Score = 243 (90.6 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 66/242 (27%), Positives = 118/242 (48%)
Query: 2 DLGDEQDATNSQNKGKIT-CHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQI 60
D+ ++ N Q+ G++ HR T +Q Q LE F+ + PHP E QR +L + L + + Q+
Sbjct: 25 DMINDMSGVNDQDGGRMRRTHRRTAYQTQELENFYMENPHPTEEQRYELGQRLNMGVNQV 84
Query: 61 KFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQ 120
K WFQNKR K N+ N LR E++R+ +R A+ +C CG + +
Sbjct: 85 KNWFQNKRNLEKINNDHLENVTLREEHDRLLATQDQLRSAMLRSLCNICGKAT-NCGDTE 143
Query: 121 RSLQKLQLENSQLKEEHEKVSNLLAKYIGKPICQMNSSLMPSLPGSAILEHQNVLPPPIL 180
+QKL EN+ L+ E ++ ++ +Y+ P +M S+ P S+ + + P+L
Sbjct: 144 YEVQKLMAENANLEREIDQFNS---RYLSHPKQRMVST-SEQAPSSS--SNPGINATPVL 197
Query: 181 PVH-----QEMDIGLDLNLQFKGINDLEQSLMMETATNAMDELIRLMRINEPLWIKPPSS 235
E + + LNL + +L ++ +D ++R +++ ++ K SS
Sbjct: 198 DFSGGTRTSEKETSIFLNLAITALRELITLGEVDCPFWMIDPIVRSKGVSK-IYEKYRSS 256
Query: 236 TN 237
N
Sbjct: 257 FN 258
>TAIR|locus:2028140 [details] [associations]
symbol:PHV "AT1G30490" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0009943 "adaxial/abaxial axis specification"
evidence=IMP] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA;IMP] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA;IMP] [GO:0010014 "meristem
initiation" evidence=RCA;IMP] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA;IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009880 "embryonic pattern
specification" evidence=IGI] [GO:0080060 "integument development"
evidence=IGI] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0010051
"xylem and phloem pattern formation" evidence=RCA] [GO:0010073
"meristem maintenance" evidence=RCA] [GO:0010075 "regulation of
meristem growth" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0045010 "actin nucleation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 INTERPRO:IPR002913 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0030154 GO:GO:0003677
GO:GO:0043565 GO:GO:0003700 GO:GO:0006351 EMBL:AC009917
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0010072 Gene3D:3.30.530.20
InterPro:IPR023393 Pfam:PF01852 SMART:SM00234 PROSITE:PS50848
GO:GO:0009855 GO:GO:0009880 GO:GO:0009944 KO:K09338 HSSP:P10037
HOGENOM:HOG000272677 ProtClustDB:CLSN2679470 GO:GO:0080060
InterPro:IPR013978 Pfam:PF08670 EMBL:Y10922 EMBL:AJ440967
EMBL:AK221046 EMBL:AK226570 IPI:IPI00523245 PIR:H86429
RefSeq:NP_174337.1 UniGene:At.27961 UniGene:At.33151
ProteinModelPortal:O04292 SMR:O04292 IntAct:O04292 STRING:O04292
PRIDE:O04292 EnsemblPlants:AT1G30490.1 GeneID:839928
KEGG:ath:AT1G30490 TAIR:At1g30490 eggNOG:NOG326783
InParanoid:O04292 OMA:ICRSYRI PhylomeDB:O04292
Genevestigator:O04292 Uniprot:O04292
Length = 841
Score = 137 (53.3 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 34/110 (30%), Positives = 61/110 (55%)
Query: 5 DEQDATNSQ-NKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKEL----GLDLKQ 59
D++D+ + + GK R+T Q++ LE + +CP P +R+QL +E ++ +Q
Sbjct: 8 DDRDSPDKGFDSGKYV--RYTPEQVEALERVYAECPKPSSLRRQQLIRECPILCNIEPRQ 65
Query: 60 IKFWFQNKRTQTKAQNERAN----NSVLRAENERVHCENLAIREALKNVI 105
IK WFQN+R + K + E A N L A N+ + EN +++ + N++
Sbjct: 66 IKVWFQNRRCREKQRKESARLQTVNRKLSAMNKLLMEENDRLQKQVSNLV 115
Score = 128 (50.1 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 46/188 (24%), Positives = 90/188 (47%)
Query: 267 SSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQ 326
+++ G+V++ M++ E+L D W + T+ V+ G NG G ++L++ Q
Sbjct: 215 AARACGLVSLEPMKVAEILKDRPSWFRDCRCV----ETLNVIPTG-NG---GTIELVNTQ 266
Query: 327 MHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYE----WPKDNISSS--HCWRLPSGFM 380
++ + L + R+++ LR+ +E G +V+ + S P +SSS L SGF+
Sbjct: 267 IYAPTTLAAARDFWTLRYSTSLEDGSYVVCERSLTSATGGPNGPLSSSFVRAKMLSSGFL 326
Query: 381 IQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCERLLAENS 440
I+ G S + ++HV++D + + R L + A++ V R ++ E S
Sbjct: 327 IRPCDGGGSIIHIVDHVDLD-VSSVPEVLRPLY-ESSKILAQKMTVAALRHVRQIAQETS 384
Query: 441 QSIHEVGG 448
+ GG
Sbjct: 385 GEVQYSGG 392
>TAIR|locus:2061544 [details] [associations]
symbol:PHB "AT2G34710" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA;IMP] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA;IMP] [GO:0010014 "meristem
initiation" evidence=RCA;IMP] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA;IMP] [GO:0080060 "integument
development" evidence=IGI] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010075 "regulation of meristem growth" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0010162
"seed dormancy process" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016049 "cell growth"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0019915 "lipid storage" evidence=RCA] [GO:0033044 "regulation
of chromosome organization" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] [GO:0045595 "regulation of cell
differentiation" evidence=RCA] [GO:0048366 "leaf development"
evidence=RCA] [GO:0048589 "developmental growth" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0071555 "cell wall organization" evidence=RCA]
[GO:0009955 "adaxial/abaxial pattern specification" evidence=IMP]
InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 INTERPRO:IPR002913 GO:GO:0005634
GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0043565 GO:GO:0003700 GO:GO:0006351 EMBL:AC003096
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0010072 Gene3D:3.30.530.20
InterPro:IPR023393 Pfam:PF01852 SMART:SM00234 PROSITE:PS50848
GO:GO:0009855 GO:GO:0009944 KO:K09338 EMBL:Y11122 EMBL:AJ441291
EMBL:AY099791 EMBL:BT000335 IPI:IPI00538463 PIR:T01364
RefSeq:NP_181018.1 UniGene:At.37771 HSSP:P10037
ProteinModelPortal:O04291 SMR:O04291 IntAct:O04291 STRING:O04291
PaxDb:O04291 PRIDE:O04291 EnsemblPlants:AT2G34710.1 GeneID:818036
KEGG:ath:AT2G34710 TAIR:At2g34710 eggNOG:NOG264261
HOGENOM:HOG000272677 InParanoid:O04291 OMA:NRKLNAM PhylomeDB:O04291
ProtClustDB:CLSN2679470 Genevestigator:O04291 GO:GO:0080060
InterPro:IPR013978 Pfam:PF08670 Uniprot:O04291
Length = 852
Score = 140 (54.3 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 2 DLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKEL----GLDL 57
D+ + + + GK R+T Q++ LE + +CP P +R+QL +E ++
Sbjct: 10 DMMNRESPDKGLDSGKYV--RYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEP 67
Query: 58 KQIKFWFQNKRTQTKAQNERAN----NSVLRAENERVHCENLAIREALKNVI 105
KQIK WFQN+R + K + E A N L A N+ + EN +++ + N++
Sbjct: 68 KQIKVWFQNRRCREKQRKEAARLQTVNRKLNAMNKLLMEENDRLQKQVSNLV 119
Score = 120 (47.3 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 46/188 (24%), Positives = 90/188 (47%)
Query: 267 SSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQ 326
+++ G+V++ M++ E+L D W+ ++ T+ V+ G NG G ++L++ Q
Sbjct: 219 AARACGLVSLEPMKVAEILKDRPSWLRDCRSV----DTLSVIPAG-NG---GTIELIYTQ 270
Query: 327 MHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYE----WPKDNISSS--HCWRLPSGFM 380
M+ + L + R+++ LR+ +E G +V+ + S P SS+ PSGF+
Sbjct: 271 MYAPTTLAAARDFWTLRYSTCLEDGSYVVCERSLTSATGGPTGPPSSNFVRAEMKPSGFL 330
Query: 381 IQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCERLLAENS 440
I+ G S + ++HV++D + R L + A++ V R ++ E S
Sbjct: 331 IRPCDGGGSILHIVDHVDLD-AWSVPEVMRPLY-ESSKILAQKMTVAALRHVRQIAQETS 388
Query: 441 QSIHEVGG 448
+ GG
Sbjct: 389 GEVQYGGG 396
>TAIR|locus:2182850 [details] [associations]
symbol:AT5G07260 "AT5G07260" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0006944 "cellular membrane fusion" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] INTERPRO:IPR002913 EMBL:CP002688
GenomeReviews:BA000015_GR Pfam:PF01852 PROSITE:PS50848
EMBL:BT003974 EMBL:BT005131 IPI:IPI00531581 RefSeq:NP_196343.2
UniGene:At.23335 ProteinModelPortal:Q84JD1 PaxDb:Q84JD1
EnsemblPlants:AT5G07260.1 GeneID:830617 KEGG:ath:AT5G07260
TAIR:At5g07260 HOGENOM:HOG000147055 InParanoid:Q84JD1
PhylomeDB:Q84JD1 ProtClustDB:CLSN2686056 ArrayExpress:Q84JD1
Genevestigator:Q84JD1 Uniprot:Q84JD1
Length = 541
Score = 182 (69.1 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 56/220 (25%), Positives = 101/220 (45%)
Query: 214 AMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARV-ESSKYSG 272
++ E++ L R P+W N++ Y Y K+FP + + + V E S+ S
Sbjct: 99 SLKEVVFLARQRTPMWTSN-GRLNLDEY------YSKLFPW--YARNAPGFVHEVSRASA 149
Query: 273 MVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSP 332
V + LV L++ W +FP+I++ + + + G ++ M +SP
Sbjct: 150 FVPCDASSLVANLMNHVSWQKIFPSIIA--------DVSVESQQRGLQKINVNFMPQISP 201
Query: 333 LVSPREYYFLRHCQQIELGLWVIVDVSYEWPK--DNISSSHCWRLPSGFMIQDMTNGCSN 390
L+ R LR + IE W I ++S + ++ + R PSG++IQ + NG S
Sbjct: 202 LIQTRNVKLLRRSRHIEDDTWAIAEISMYFSSYAQHLRPEYM-RFPSGYLIQHIANGISK 260
Query: 391 VTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQR 430
VT L+H ++ + +N +GA+RW+ LQ+
Sbjct: 261 VTILDHWVYKEEEGMNTFN-----SNSEFGAQRWLTALQK 295
Score = 67 (28.6 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 83 LRAENERVHCENLAIREALKNV-ICPSCGGPPFGIEERQRSLQKLQLENSQLKEE 136
L +N+ + EN A A+ + IC SC P EER+ L LEN++L+ E
Sbjct: 11 LHQQNDLLRAENRARIHAMTSPSICRSCEEPIISTEERE-----LWLENARLRSE 60
>TAIR|locus:2134088 [details] [associations]
symbol:HB-8 "AT4G32880" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IMP] [GO:0010089 "xylem development"
evidence=RCA;IMP] [GO:0045597 "positive regulation of cell
differentiation" evidence=IMP] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0010014 "meristem initiation"
evidence=RCA;IMP] [GO:0010072 "primary shoot apical meristem
specification" evidence=RCA;IMP] [GO:0010067 "procambium
histogenesis" evidence=IEP] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009793
"embryo development ending in seed dormancy" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009880 "embryonic pattern specification" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0010090 "trichome
morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010638 "positive
regulation of organelle organization" evidence=RCA] [GO:0016049
"cell growth" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] [GO:0042546 "cell wall biogenesis"
evidence=RCA] [GO:0044036 "cell wall macromolecule metabolic
process" evidence=RCA] [GO:0045010 "actin nucleation" evidence=RCA]
[GO:0045595 "regulation of cell differentiation" evidence=RCA]
[GO:0048589 "developmental growth" evidence=RCA] [GO:0048765 "root
hair cell differentiation" evidence=RCA] [GO:0051301 "cell
division" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] InterPro:IPR001356 InterPro:IPR004827
InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00338 SMART:SM00389 INTERPRO:IPR002913 GO:GO:0005634
GO:GO:0030154 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733
GO:GO:0008284 GO:GO:0043565 GO:GO:0045597 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0010072
Gene3D:3.30.530.20 InterPro:IPR023393 Pfam:PF01852 SMART:SM00234
PROSITE:PS50848 GO:GO:0010089 KO:K09338 HSSP:P10037
HOGENOM:HOG000272677 ProtClustDB:CLSN2679470 InterPro:IPR013978
Pfam:PF08670 EMBL:AL161582 EMBL:Z50851 EMBL:AJ441292 EMBL:AY099631
EMBL:BT008798 IPI:IPI00546637 PIR:T10695 RefSeq:NP_195014.1
UniGene:At.31628 ProteinModelPortal:Q39123 SMR:Q39123 IntAct:Q39123
STRING:Q39123 PaxDb:Q39123 PRIDE:Q39123 EnsemblPlants:AT4G32880.1
GeneID:829424 KEGG:ath:AT4G32880 TAIR:At4g32880 eggNOG:NOG325934
InParanoid:Q39123 OMA:DAVMCCS PhylomeDB:Q39123
Genevestigator:Q39123 GO:GO:0010067 Uniprot:Q39123
Length = 833
Score = 143 (55.4 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 3 LGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKEL----GLDLK 58
+G + +++ + GK R+T Q++ LE + DCP P +R+QL +E ++ K
Sbjct: 1 MGGGSNNSHNMDNGKYV--RYTPEQVEALERLYNDCPKPSSMRRQQLIRECPILSNIEPK 58
Query: 59 QIKFWFQNKRTQTKAQNE----RANNSVLRAENERVHCENLAIREALKNVI 105
QIK WFQN+R + K + E +A N L A N+ + EN +++ + +++
Sbjct: 59 QIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLV 109
Score = 95 (38.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 33/140 (23%), Positives = 70/140 (50%)
Query: 267 SSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQ 326
+++ G+V ++ ++ E+L D W+ R++ ++ N G L+L++ Q
Sbjct: 205 AARACGLVGLDPTRVAEILKDKPCWL-------RDCRSLDIVNVLSTAN-GGTLELIYMQ 256
Query: 327 MHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWPKDNIS---SSHCWR---LPSGFM 380
++ + L R+++ LR+ +E G VI + S ++ S S H R LPSG++
Sbjct: 257 LYAPTTLAPARDFWMLRYTSVMEDGSLVICERSLNNTQNGPSMPPSPHFVRAEILPSGYL 316
Query: 381 IQDMTNGCSNVTWLEHVEVD 400
I+ G S + ++H +++
Sbjct: 317 IRPCEGGGSILHIVDHFDLE 336
Score = 39 (18.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 249 EKVFPRANHFKTSSARVESSKYSGMVTMNG 278
+K+F N KT S+ G + M+G
Sbjct: 763 DKIFDNNNGKKTLSSEFPQIMQQGFMCMDG 792
>TAIR|locus:2175856 [details] [associations]
symbol:REV "AT5G60690" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0008289 "lipid binding" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IMP] [GO:0010014
"meristem initiation" evidence=RCA;IMP] [GO:0009956 "radial pattern
formation" evidence=IMP] [GO:0010051 "xylem and phloem pattern
formation" evidence=RCA;IMP] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA;IMP] [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=RCA;IMP]
[GO:0007155 "cell adhesion" evidence=RCA] [GO:0009887 "organ
morphogenesis" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010072 "primary shoot apical meristem
specification" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0010075 "regulation of meristem growth"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0016049 "cell growth" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0045595 "regulation of cell
differentiation" evidence=RCA] [GO:0048439 "flower morphogenesis"
evidence=RCA] [GO:0048519 "negative regulation of biological
process" evidence=RCA] [GO:0048589 "developmental growth"
evidence=RCA] [GO:0048765 "root hair cell differentiation"
evidence=RCA] [GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 INTERPRO:IPR002913 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030154 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 EMBL:AB005246 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:3.30.530.20 InterPro:IPR023393 Pfam:PF01852
SMART:SM00234 PROSITE:PS50848 GO:GO:0010051 GO:GO:0009855
GO:GO:0009944 KO:K09338 HSSP:P10037 ProtClustDB:CLSN2679470
InterPro:IPR013978 Pfam:PF08670 GO:GO:0009956 GO:GO:0010014
EMBL:AF188994 EMBL:AY170127 EMBL:AF233592 EMBL:AK229564
EMBL:EF598684 EMBL:EF598685 EMBL:EF598686 EMBL:EF598687
EMBL:EF598688 EMBL:EF598689 EMBL:EF598690 EMBL:EF598691
EMBL:EF598692 EMBL:EF598693 EMBL:EF598694 EMBL:EF598695
EMBL:EF598696 EMBL:EF598697 EMBL:EF598698 EMBL:EF598699
EMBL:EF598700 EMBL:EF598701 EMBL:EF598702 EMBL:EF598703
EMBL:EF598704 EMBL:EF598705 EMBL:EF598706 IPI:IPI00531930
RefSeq:NP_200877.1 UniGene:At.49201 UniGene:At.7238
ProteinModelPortal:Q9SE43 SMR:Q9SE43 STRING:Q9SE43 PaxDb:Q9SE43
PRIDE:Q9SE43 EnsemblPlants:AT5G60690.1 GeneID:836190
KEGG:ath:AT5G60690 TAIR:At5g60690 eggNOG:NOG323815
InParanoid:Q9M5B6 OMA:TIELVYM PhylomeDB:Q9SE43
Genevestigator:Q9SE43 Uniprot:Q9SE43
Length = 842
Score = 136 (52.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 30/93 (32%), Positives = 52/93 (55%)
Query: 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGL----DLKQIKFWFQNKRTQTKAQNER 77
R+T Q++ LE + +CP P +R+QL +E + + KQIK WFQN+R + K + E
Sbjct: 28 RYTAEQVEALERVYAECPKPSSLRRQQLIRECSILANIEPKQIKVWFQNRRCRDKQRKEA 87
Query: 78 AN----NSVLRAENERVHCENLAIREALKNVIC 106
+ N L A N+ + EN +++ + ++C
Sbjct: 88 SRLQSVNRKLSAMNKLLMEENDRLQKQVSQLVC 120
Score = 94 (38.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 40/188 (21%), Positives = 89/188 (47%)
Query: 267 SSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQ 326
+++ G+V++ M++ E+L D W R+++V GN G ++L++ Q
Sbjct: 206 AARACGLVSLEPMKIAEILKDRPSWF-------RDCRSLEVFTMFPAGN-GGTIELVYMQ 257
Query: 327 MHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWP---KDNISSSHCWR---LPSGFM 380
+ + L R+++ LR+ ++ G +V+ + S + S+S R L SG++
Sbjct: 258 TYAPTTLAPARDFWTLRYTTSLDNGSFVVCERSLSGSGAGPNAASASQFVRAEMLSSGYL 317
Query: 381 IQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCERLLAE-N 439
I+ G S + ++H+ ++ + L R L + A++ ++ R +L E N
Sbjct: 318 IRPCDGGGSIIHIVDHLNLEAWSVPDVL-RPLY-ESSKVVAQKMTISALRYIRQLAQESN 375
Query: 440 SQSIHEVG 447
+ ++ +G
Sbjct: 376 GEVVYGLG 383
Score = 41 (19.5 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 140 VSNLLAKYIGKPICQMNSSLMPSLPGSAIL 169
+SN L+ ++G +C S L+ ++P + ++
Sbjct: 436 ISNSLS-FLGGVLCAKASMLLQNVPPAVLI 464
>TAIR|locus:2034086 [details] [associations]
symbol:ATHB-15 "AT1G52150" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS;TAS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0009965 "leaf morphogenesis" evidence=IMP]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA;IMP]
[GO:0010014 "meristem initiation" evidence=RCA;IMP] [GO:0009887
"organ morphogenesis" evidence=RCA;IMP] [GO:0010073 "meristem
maintenance" evidence=RCA;TAS] [GO:0010075 "regulation of meristem
growth" evidence=RCA;IMP] [GO:0010087 "phloem or xylem
histogenesis" evidence=IMP] [GO:0048263 "determination of dorsal
identity" evidence=IMP] [GO:0080060 "integument development"
evidence=IGI] [GO:0006995 "cellular response to nitrogen
starvation" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009944 "polarity specification of adaxial/abaxial axis"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0010089 "xylem development" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0048439 "flower morphogenesis"
evidence=RCA] [GO:0048519 "negative regulation of biological
process" evidence=RCA] [GO:0048765 "root hair cell differentiation"
evidence=RCA] [GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS50071
SMART:SM00389 INTERPRO:IPR002913 EMBL:CP002684 GO:GO:0005634
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:3.30.530.20 InterPro:IPR023393 Pfam:PF01852 SMART:SM00234
PROSITE:PS50848 GO:GO:0009965 GO:GO:0010087 KO:K09338
HOGENOM:HOG000272677 ProtClustDB:CLSN2679470 GO:GO:0080060
InterPro:IPR013978 Pfam:PF08670 GO:GO:0010075 GO:GO:0048263
EMBL:AC006216 GO:GO:0010014 IPI:IPI00545601 RefSeq:NP_849795.1
UniGene:At.11011 ProteinModelPortal:B3H4G8 SMR:B3H4G8 STRING:B3H4G8
PRIDE:B3H4G8 EnsemblPlants:AT1G52150.2 GeneID:841645
KEGG:ath:AT1G52150 OMA:EHVASMA Genevestigator:B3H4G8 Uniprot:B3H4G8
Length = 837
Score = 133 (51.9 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKEL----GLDLKQIKFWFQNKRTQTKAQNE- 76
R+T Q++ LE + DCP P +R+QL +E ++ KQIK WFQN+R + K + E
Sbjct: 20 RYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 79
Query: 77 ---RANNSVLRAENERVHCENLAIREALKNVI 105
+A N L A N+ + EN +++ + ++
Sbjct: 80 SRLQAVNRKLTAMNKLLMEENDRLQKQVSQLV 111
Score = 95 (38.5 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 38/190 (20%), Positives = 88/190 (46%)
Query: 267 SSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLE--PGINGNRNGCLQLMH 324
+++ G+V + ++ E++ D W + R ++V+ P NG G ++L++
Sbjct: 206 AARACGLVGLEPTRVAEIVKDRPSWF-------RECRAVEVMNVLPTANG---GTVELLY 255
Query: 325 EQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWPKDNISSS------HCWRLPSG 378
Q++ + L PR+++ LR+ +E G V+ + S + ++ S L SG
Sbjct: 256 MQLYAPTTLAPPRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSMPLVQNFVRAEMLSSG 315
Query: 379 FMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCERLLAE 438
++I+ G S + ++H++++ + R L + A++ + R +++ E
Sbjct: 316 YLIRPCDGGGSIIHIVDHMDLE-ACSVPEVLRPLY-ESPKVLAQKTTMAALRQLKQIAQE 373
Query: 439 NSQSIHEVGG 448
+Q+ V G
Sbjct: 374 VTQTNSSVNG 383
>TAIR|locus:2154724 [details] [associations]
symbol:HB52 "homeobox protein 52" species:3702
"Arabidopsis thaliana" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0009637 "response
to blue light" evidence=IEP] [GO:0009646 "response to absence of
light" evidence=IEP] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0043565 GO:GO:0003700 GO:GO:0006351 GO:GO:0009637
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009646 EMBL:AB007644
EMBL:BT015927 EMBL:BT021920 EMBL:AK229211 IPI:IPI00520413
RefSeq:NP_200209.1 UniGene:At.29523 ProteinModelPortal:Q9FN29
SMR:Q9FN29 EnsemblPlants:AT5G53980.1 GeneID:835481
KEGG:ath:AT5G53980 GeneFarm:3987 TAIR:At5g53980 eggNOG:NOG240187
HOGENOM:HOG000029156 InParanoid:Q9FN29 OMA:DELYACF PhylomeDB:Q9FN29
ProtClustDB:CLSN2916425 Genevestigator:Q9FN29 GermOnline:AT5G53980
Uniprot:Q9FN29
Length = 156
Score = 125 (49.1 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 11 NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQ 70
NSQ++GK R T Q++ LE F + + + QLS +LGL +Q+ WFQNKR +
Sbjct: 3 NSQSQGKNKKKRLTQDQVRQLEKCFTMNKKLEPDLKLQLSNQLGLPQRQVAVWFQNKRAR 62
Query: 71 TKAQNERANNSVLRAENE 88
K Q+ + L++++E
Sbjct: 63 FKTQSLEVQHCTLQSKHE 80
>UNIPROTKB|F1RSD4 [details] [associations]
symbol:PRRX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GeneTree:ENSGT00700000104279
EMBL:CU138499 Ensembl:ENSSSCT00000006879 Uniprot:F1RSD4
Length = 141
Score = 105 (42.0 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 8 DATNSQNKGKITCHRHTT----HQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFW 63
D NS+ K K R+ T Q+Q LE F+ +PD R L++ + L +++ W
Sbjct: 4 DQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVW 63
Query: 64 FQNKRTQTKAQNERA 78
FQN+R + + +NERA
Sbjct: 64 FQNRRAKFR-RNERA 77
Score = 40 (19.1 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 152 ICQMNSSLMPSLPGSAILEHQNVLPPP 178
+ N+SL+ S G Q ++P P
Sbjct: 79 LANKNASLLKSYSGDVTAVEQPIVPRP 105
>TAIR|locus:2116442 [details] [associations]
symbol:AT4G26920 "AT4G26920" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] INTERPRO:IPR002913 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL161566 GO:GO:0003677 Pfam:PF01852
PROSITE:PS50848 HOGENOM:HOG000147055 IPI:IPI00519973 PIR:D85312
RefSeq:NP_194422.1 UniGene:At.54524 ProteinModelPortal:Q9M0J8
STRING:Q9M0J8 PaxDb:Q9M0J8 PRIDE:Q9M0J8 EnsemblPlants:AT4G26920.1
GeneID:828799 KEGG:ath:AT4G26920 TAIR:At4g26920 eggNOG:NOG311290
OMA:WIIADIS PhylomeDB:Q9M0J8 ArrayExpress:Q9M0J8
Genevestigator:Q9M0J8 Uniprot:Q9M0J8
Length = 461
Score = 136 (52.9 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 48/191 (25%), Positives = 94/191 (49%)
Query: 195 QFKGINDLEQSLMMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPR 254
QF ++ +L + A ++E+I L + PLW + S E ++ E Y + FP
Sbjct: 53 QFPNVSSYLLNLWVVLAC-IVNEIIALATLESPLWRR---SQREEMLTLN-EYYSRFFPW 107
Query: 255 ANHFKTSSARV-ESSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGIN 313
+ K V E+S+ S ++ ++ L+ L + +WV +FP++V +I+ +
Sbjct: 108 --YAKNVPRFVHEASRASEVIHVDASWLLTKLKNPMRWVTIFPSLVGNV-SIE------S 158
Query: 314 GNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWPK--DNISSSH 371
N + + + E + +++P++ R+ LR+C +I W+I D+S D++
Sbjct: 159 SNDDVRMIIDMEFLTLITPVIPTRKVKVLRYCHRIANDTWIIADISMYLSSYSDDLRPEF 218
Query: 372 CWRLPSGFMIQ 382
R PSGF+I+
Sbjct: 219 L-RFPSGFIIK 228
>UNIPROTKB|G3X7M1 [details] [associations]
symbol:SHOX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803
GO:GO:0000976 GeneTree:ENSGT00700000104279 KO:K09331 CTD:6473
OMA:SNHCPVH EMBL:DAAA02005893 RefSeq:NP_001178475.1
UniGene:Bt.106108 Ensembl:ENSBTAT00000038279 GeneID:615159
KEGG:bta:615159 NextBio:20899478 Uniprot:G3X7M1
Length = 306
Score = 132 (51.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 2 DLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
D+ E + ++ K + + T Q+ LE F + +PD R +LS+ LGL +++
Sbjct: 105 DVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 164
Query: 62 FWFQNKRTQTKAQNERANNSVLRAENERVH-CE-----NL-AIREALKNVICPSCGG-PP 113
WFQN+R + + Q + +NSV+ + C N+ A+R + V P C PP
Sbjct: 165 VWFQNRRAKCRKQENQMHNSVILGTASHLDACRVAPYVNMGALRMPFQQVARPDCAALPP 224
>ZFIN|ZDB-GENE-040426-1457 [details] [associations]
symbol:shox2 "short stature homeobox 2"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000976 "transcription
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0007507 "heart
development" evidence=IMP] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
ZFIN:ZDB-GENE-040426-1457 GO:GO:0005634 GO:GO:0007507 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 HOGENOM:HOG000231518
InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803 GO:GO:0000976
GeneTree:ENSGT00700000104279 HSSP:P06601 CTD:6474 eggNOG:NOG113578
HOVERGEN:HBG007233 KO:K09331 OrthoDB:EOG41C6X2 EMBL:BX004974
EMBL:BC056324 EMBL:BC065345 IPI:IPI00491363 RefSeq:NP_957490.1
UniGene:Dr.26980 SMR:Q7SZN8 Ensembl:ENSDART00000009564
GeneID:394171 KEGG:dre:394171 InParanoid:Q7SZN8 NextBio:20815116
Uniprot:Q7SZN8
Length = 299
Score = 131 (51.2 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 40/146 (27%), Positives = 70/146 (47%)
Query: 7 QDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQN 66
+D T ++ K + + T Q+ LE F + +PD R +LS+ LGL +++ WFQN
Sbjct: 99 EDETQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN 158
Query: 67 KRTQTKAQNERANNSVL-RAENERVHCE-----NL-AIREALKNVICPSCGGPPFGIEER 119
+R + + Q + + VL A ++ C N+ A+R + C PPF + +
Sbjct: 159 RRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQD--SHCNVPPFSFQVQ 216
Query: 120 QRSLQKLQLENSQLKEEHEKVSNLLA 145
+ LQL+++ H S+L A
Sbjct: 217 AQ----LQLDSAVAHAHHHLHSHLAA 238
>UNIPROTKB|H0YJ32 [details] [associations]
symbol:SHOX2 "Short stature homeobox protein 2"
species:9606 "Homo sapiens" [GO:0000976 "transcription regulatory
region sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000976 HGNC:HGNC:10854
EMBL:AC112502 Ensembl:ENST00000555977 Uniprot:H0YJ32
Length = 178
Score = 119 (46.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 2 DLGD-EQDATNSQNKG--KITCHRHTTH----QIQTLEAFFKDCPHPDENQRRQLSKELG 54
+L D ++DA +++G KI R T+ Q+ LE F + +PD R +LS+ LG
Sbjct: 23 ELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG 82
Query: 55 LDLKQIKFWFQNKRTQTKAQNERANNSVL 83
L +++ WFQN+R + + Q + + VL
Sbjct: 83 LSEARVQVWFQNRRAKCRKQENQLHKGVL 111
>UNIPROTKB|A6NLW8 [details] [associations]
symbol:DUXA "Double homeobox protein A" species:9606 "Homo
sapiens" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000976 EMBL:AC025588
IPI:IPI00556392 RefSeq:NP_001012747.1 UniGene:Hs.585857
ProteinModelPortal:A6NLW8 SMR:A6NLW8 PhosphoSite:A6NLW8
PRIDE:A6NLW8 Ensembl:ENST00000554048 GeneID:503835 KEGG:hsa:503835
UCSC:uc002qoa.1 CTD:503835 GeneCards:GC19M057663 H-InvDB:HIX0016200
HGNC:HGNC:32179 MIM:611168 neXtProt:NX_A6NLW8 PharmGKB:PA142671924
eggNOG:NOG289976 HOGENOM:HOG000112297 InParanoid:A6NLW8 OMA:PGYATKQ
OrthoDB:EOG4N04FW GenomeRNAi:503835 NextBio:112042 Bgee:A6NLW8
CleanEx:HS_DUXA Genevestigator:A6NLW8 Uniprot:A6NLW8
Length = 204
Score = 121 (47.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 30/102 (29%), Positives = 54/102 (52%)
Query: 4 GDEQDATNSQNKGKITCHR-HTTHQIQTL-EAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
G +Q Q++ C ++ Q+ TL +AF K+ P+P + R +L+KE+G+ +++
Sbjct: 88 GQDQPGVEFQSREARRCRTTYSASQLHTLIKAFMKN-PYPGIDSREELAKEIGVPESRVQ 146
Query: 62 FWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKN 103
WFQN+R++ Q +R + L E + E L E +N
Sbjct: 147 IWFQNRRSRLLLQRKREPVASLEQEEQGKIPEGLQGAEDTQN 188
>TAIR|locus:2129136 [details] [associations]
symbol:HB-2 "homeobox protein 2" species:3702
"Arabidopsis thaliana" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0009733
"response to auxin stimulus" evidence=IMP] [GO:0009826
"unidimensional cell growth" evidence=IMP] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0048364 "root development" evidence=IMP] [GO:0009735 "response
to cytokinin stimulus" evidence=IEP] [GO:0009641 "shade avoidance"
evidence=IEP] [GO:0010017 "red or far-red light signaling pathway"
evidence=IEP] [GO:0010218 "response to far red light" evidence=IEP]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0010016 "shoot system morphogenesis" evidence=IMP]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR003106
InterPro:IPR006712 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 Pfam:PF02183 Pfam:PF04618 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00340 SMART:SM00389
GO:GO:0005634 GO:GO:0045892 GO:GO:0042803 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0009735 GO:GO:0009733 GO:GO:0008283
GO:GO:0043565 GO:GO:0003700 GO:GO:0006351 GO:GO:0010218
GO:GO:0048364 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009826
EMBL:AL161544 GO:GO:0009585 GO:GO:0000976 GO:GO:0010017 KO:K09338
GO:GO:0009641 EMBL:Z97342 EMBL:M90394 EMBL:Z19602 EMBL:X68145
EMBL:X68146 EMBL:AF375453 EMBL:AY081747 EMBL:EF193551 EMBL:EF193552
EMBL:EF193553 EMBL:EF193554 EMBL:EF193555 EMBL:EF193556
EMBL:EF193557 EMBL:EF193558 EMBL:EF193559 EMBL:EF193560
EMBL:EF193561 EMBL:EF193562 EMBL:EF193563 EMBL:EF193564
EMBL:EF193565 EMBL:AY174653 EMBL:AY174654 EMBL:AY174655
EMBL:AY174656 IPI:IPI00517186 PIR:S31424 RefSeq:NP_193411.1
UniGene:At.24419 UniGene:At.74809 ProteinModelPortal:Q05466
SMR:Q05466 IntAct:Q05466 STRING:Q05466 EnsemblPlants:AT4G16780.1
GeneID:827384 KEGG:ath:AT4G16780 GeneFarm:3977 TAIR:At4g16780
eggNOG:NOG150160 InParanoid:Q05466 OMA:EDGDNSR PhylomeDB:Q05466
ProtClustDB:CLSN2685845 Genevestigator:Q05466 GermOnline:AT4G16780
GO:GO:0010016 Uniprot:Q05466
Length = 284
Score = 125 (49.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 3 LGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKF 62
+ D++D NS+ K +++ Q LE FKD + Q++ L+K+LGL +Q++
Sbjct: 118 ISDDEDGDNSRKKLRLS-----KDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEV 172
Query: 63 WFQNKRTQTKAQNERANNSVLRAENERVHCENL 95
WFQN+R +TK + + LR R CENL
Sbjct: 173 WFQNRRARTKLKQTEVDCEFLR----RC-CENL 200
Score = 39 (18.8 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 428 LQRTCERLLAENSQSIHEV 446
L+R CE L EN + EV
Sbjct: 193 LRRCCENLTEENRRLQKEV 211
>UNIPROTKB|F1NF72 [details] [associations]
symbol:F1NF72 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0009954
"proximal/distal pattern formation" evidence=IEA] [GO:0030901
"midbrain development" evidence=IEA] [GO:0030902 "hindbrain
development" evidence=IEA] [GO:0030917 "midbrain-hindbrain boundary
development" evidence=IEA] [GO:0035115 "embryonic forelimb
morphogenesis" evidence=IEA] [GO:0043473 "pigmentation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048666 "neuron
development" evidence=IEA] InterPro:IPR000047 InterPro:IPR000747
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00026 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0007275 GO:GO:0005634
GO:GO:0003700 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 GO:GO:0000976 GeneTree:ENSGT00680000099870
PROSITE:PS00033 InterPro:IPR019549 InterPro:IPR019737 Pfam:PF10525
EMBL:AADN02016916 IPI:IPI00812139 Ensembl:ENSGALT00000019794
OMA:ASNDEKR Uniprot:F1NF72
Length = 100
Score = 106 (42.4 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72
T Q+Q L+A F+ + E +R+ L++EL L+ QIK WFQNKR + K
Sbjct: 11 TAEQLQRLKAEFQANRYITEQRRQSLAQELSLNESQIKIWFQNKRAKIK 59
>RGD|1586211 [details] [associations]
symbol:Hoxb8 "homeo box B8" species:10116 "Rattus norvegicus"
[GO:0000976 "transcription regulatory region sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007625 "grooming behavior" evidence=ISO]
[GO:0008344 "adult locomotory behavior" evidence=ISO] [GO:0009952
"anterior/posterior pattern specification" evidence=ISO]
[GO:0019233 "sensory perception of pain" evidence=ISO] [GO:0021516
"dorsal spinal cord development" evidence=ISO] [GO:0045638
"negative regulation of myeloid cell differentiation"
evidence=ISO;ISS] [GO:0048704 "embryonic skeletal system
morphogenesis" evidence=ISO] [GO:0048705 "skeletal system
morphogenesis" evidence=ISO] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS00032 PROSITE:PS50071 SMART:SM00389
RGD:1586211 GO:GO:0007275 GO:GO:0005634 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 GO:GO:0045638 eggNOG:NOG314669 EMBL:M37565
IPI:IPI00476117 PIR:A43559 UniGene:Rn.231433
ProteinModelPortal:P18863 SMR:P18863 STRING:P18863 UCSC:RGD:1586211
Genevestigator:P18863 Uniprot:P18863
Length = 92
Score = 105 (42.0 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 15 KGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74
+G+ T R+ T +++ E F P+ +R ++S LGL +Q+K WFQN+R + K +
Sbjct: 13 RGRQTYSRYQTLELEK-EFLFN--PYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKE 69
Query: 75 NERANNSVLRAENERVHCENL 95
N + + E E + E L
Sbjct: 70 NNKDKFPSSKCEQEELEKEKL 90
>UNIPROTKB|F1PUR9 [details] [associations]
symbol:DUXA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000976 OMA:PGYATKQ
EMBL:AAEX03000701 Ensembl:ENSCAFT00000003829
GeneTree:ENSGT00610000085975 Uniprot:F1PUR9
Length = 163
Score = 113 (44.8 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 23 HTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNER 77
+T+ Q+ TL F + P+P + R QL+KE+G+ +++ WFQN+R++ Q +R
Sbjct: 107 YTSSQLHTLIEAFTNNPYPGIDTREQLAKEIGIPESRVQIWFQNRRSRFHVQRKR 161
>TAIR|locus:2144578 [details] [associations]
symbol:HB51 "homeobox 51" species:3702 "Arabidopsis
thaliana" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;IDA] [GO:0009965 "leaf
morphogenesis" evidence=IMP] [GO:0010434 "bract formation"
evidence=IGI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IGI] [GO:0048510 "regulation of timing of
transition from vegetative to reproductive phase" evidence=IGI]
[GO:0010582 "floral meristem determinacy" evidence=IGI] [GO:0048443
"stamen development" evidence=RCA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045893 GO:GO:0043565 GO:GO:0003700 GO:GO:0006351
EMBL:AB005235 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009965
GO:GO:0048510 GO:GO:0010582 GO:GO:0000976 HOGENOM:HOG000006025
EMBL:AL162506 IPI:IPI00533817 IPI:IPI01019585 PIR:T48406
RefSeq:NP_195999.2 UniGene:At.54712 ProteinModelPortal:Q9LZR0
SMR:Q9LZR0 GeneID:831723 KEGG:ath:AT5G03790 GeneFarm:3983
TAIR:At5g03790 eggNOG:KOG0483 InParanoid:Q9LZR0 OMA:AHPRTEN
ArrayExpress:Q9LZR0 Genevestigator:Q9LZR0 GermOnline:AT5G03790
GO:GO:0010434 Uniprot:Q9LZR0
Length = 235
Score = 120 (47.3 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQT 71
+ N I R T+ Q+ +LE F++ D +++ +LS+ELGL +QI WFQN+R +
Sbjct: 70 NNNNEMIKKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARW 129
Query: 72 KA-QNERANNSVLRAENERVHCENLAIREALKNV 104
KA Q E+ +S LR E + V E + + +K +
Sbjct: 130 KAKQLEQLYDS-LRQEYDVVSREKQMLHDEVKKL 162
>UNIPROTKB|H9L2C7 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0009887 "organ morphogenesis"
evidence=IEA] [GO:0021526 "medial motor column neuron
differentiation" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104177 EMBL:AADN02073379 EMBL:AADN02073380
Ensembl:ENSGALT00000035845 OMA:ERSWHSK Uniprot:H9L2C7
Length = 237
Score = 120 (47.3 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72
T Q++TL+ +K+ P P + R QLS E GLD++ ++ WFQN+R + K
Sbjct: 140 TAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK 188
>RGD|3674 [details] [associations]
symbol:Shox2 "short stature homeobox 2" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA;ISO] [GO:0000976
"transcription regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001649 "osteoblast differentiation"
evidence=IEA;ISO] [GO:0002053 "positive regulation of mesenchymal
cell proliferation" evidence=IEA;ISO] [GO:0002062 "chondrocyte
differentiation" evidence=ISO] [GO:0002063 "chondrocyte development"
evidence=IEA;ISO] [GO:0003170 "heart valve development"
evidence=IEA;ISO] [GO:0003209 "cardiac atrium morphogenesis"
evidence=IEA;ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0030326 "embryonic limb morphogenesis"
evidence=IEA;ISO] [GO:0032330 "regulation of chondrocyte
differentiation" evidence=IEA;ISO] [GO:0035115 "embryonic forelimb
morphogenesis" evidence=ISO] [GO:0045880 "positive regulation of
smoothened signaling pathway" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IEA;ISO] [GO:0048598 "embryonic
morphogenesis" evidence=ISO] [GO:0048743 "positive regulation of
skeletal muscle fiber development" evidence=IEA;ISO] [GO:0050772
"positive regulation of axonogenesis" evidence=IEA;ISO] [GO:0060272
"embryonic skeletal joint morphogenesis" evidence=IEA;ISO]
[GO:0060351 "cartilage development involved in endochondral bone
morphogenesis" evidence=IEA;ISO] [GO:0060415 "muscle tissue
morphogenesis" evidence=IEA;ISO] [GO:2000172 "regulation of branching
morphogenesis of a nerve" evidence=IEA;ISO] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046
PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 RGD:3674
GO:GO:0005634 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0000122 GO:GO:0030326 GO:GO:0050772
GO:GO:0032330 GO:GO:0001649 HOGENOM:HOG000231518 InterPro:IPR003654
Pfam:PF03826 PROSITE:PS50803 GO:GO:0000976 GO:GO:0060272
GO:GO:0002053 GO:GO:0048743 GO:GO:0060351 GO:GO:0002063 GO:GO:0045880
GO:GO:0003209 GO:GO:0048557 GO:GO:0060415 GO:GO:2000172 CTD:6474
eggNOG:NOG113578 HOVERGEN:HBG007233 KO:K09331 OrthoDB:EOG41C6X2
GO:GO:0003170 EMBL:AJ002258 EMBL:AJ002259 EMBL:AJ002260
IPI:IPI00231489 IPI:IPI00559825 RefSeq:NP_037160.1 UniGene:Rn.11258
ProteinModelPortal:O35750 SMR:O35750 STRING:O35750 GeneID:25546
KEGG:rno:25546 UCSC:RGD:3674 InParanoid:O35750 NextBio:607081
Genevestigator:O35750 GermOnline:ENSRNOG00000012478 Uniprot:O35750
Length = 237
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 2 DLGD-EQDATNSQNKG--KITCHRHTTH----QIQTLEAFFKDCPHPDENQRRQLSKELG 54
+L D ++DA +++G KI R T+ Q+ LE F + +PD R +LS+ LG
Sbjct: 25 ELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG 84
Query: 55 LDLKQIKFWFQNKRTQTKAQNERANNSVL 83
L +++ WFQN+R + + Q + + VL
Sbjct: 85 LSEARVQVWFQNRRAKCRKQENQLHKGVL 113
>UNIPROTKB|O35750 [details] [associations]
symbol:Shox2 "Short stature homeobox protein 2"
species:10116 "Rattus norvegicus" [GO:0000976 "transcription
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 RGD:3674 GO:GO:0005634 GO:GO:0045944
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
GO:GO:0030326 GO:GO:0050772 GO:GO:0032330 GO:GO:0001649
HOGENOM:HOG000231518 InterPro:IPR003654 Pfam:PF03826
PROSITE:PS50803 GO:GO:0000976 GO:GO:0060272 GO:GO:0002053
GO:GO:0048743 GO:GO:0060351 GO:GO:0002063 GO:GO:0045880
GO:GO:0003209 GO:GO:0048557 GO:GO:0060415 GO:GO:2000172 CTD:6474
eggNOG:NOG113578 HOVERGEN:HBG007233 KO:K09331 OrthoDB:EOG41C6X2
GO:GO:0003170 EMBL:AJ002258 EMBL:AJ002259 EMBL:AJ002260
IPI:IPI00231489 IPI:IPI00559825 RefSeq:NP_037160.1 UniGene:Rn.11258
ProteinModelPortal:O35750 SMR:O35750 STRING:O35750 GeneID:25546
KEGG:rno:25546 UCSC:RGD:3674 InParanoid:O35750 NextBio:607081
Genevestigator:O35750 GermOnline:ENSRNOG00000012478 Uniprot:O35750
Length = 237
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 2 DLGD-EQDATNSQNKG--KITCHRHTTH----QIQTLEAFFKDCPHPDENQRRQLSKELG 54
+L D ++DA +++G KI R T+ Q+ LE F + +PD R +LS+ LG
Sbjct: 25 ELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG 84
Query: 55 LDLKQIKFWFQNKRTQTKAQNERANNSVL 83
L +++ WFQN+R + + Q + + VL
Sbjct: 85 LSEARVQVWFQNRRAKCRKQENQLHKGVL 113
>ZFIN|ZDB-GENE-060728-1 [details] [associations]
symbol:lhx4 "LIM homeobox 4" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-060728-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 KO:K09374 HOVERGEN:HBG006263 CTD:89884
OMA:LSFRDDQ EMBL:BX294388 EMBL:CR381643 EMBL:CT025732
IPI:IPI00616255 RefSeq:NP_001116445.1 UniGene:Dr.92005
Ensembl:ENSDART00000057644 GeneID:571943 KEGG:dre:571943
NextBio:20890768 Uniprot:B0S5S7
Length = 391
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72
T Q++TL++ +K+ P P + R QLS E GLD++ ++ WFQN+R + K
Sbjct: 168 TAKQLETLKSAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK 216
>ZFIN|ZDB-GENE-990415-205 [details] [associations]
symbol:vsx1 "visual system homeobox 1 homolog,
chx10-like" species:7955 "Danio rerio" [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007601 "visual perception" evidence=IEA]
[GO:0050896 "response to stimulus" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
ZFIN:ZDB-GENE-990415-205 GO:GO:0007275 GO:GO:0005634 GO:GO:0007601
GO:GO:0043565 GO:GO:0003700 GO:GO:0006351 GO:GO:0050896
Gene3D:1.10.10.60 SUPFAM:SSF46689 eggNOG:NOG237888
HOGENOM:HOG000115909 InterPro:IPR023339 PROSITE:PS51496 CTD:30813
HOVERGEN:HBG036251 KO:K09335 OrthoDB:EOG4907B0 EMBL:AF025348
IPI:IPI00513332 RefSeq:NP_571408.1 UniGene:Dr.558
ProteinModelPortal:O42250 SMR:O42250 STRING:O42250 GeneID:30598
KEGG:dre:30598 InParanoid:O42250 NextBio:20806965
ArrayExpress:O42250 Uniprot:O42250
Length = 344
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 4 GDEQDATNSQNKGKITCHRH----TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQ 59
GD D NS N K RH T+HQ++ LE F + +PD R L+ + L +
Sbjct: 135 GDRNDGKNSGNSQKRKKRRHRTVFTSHQLEELEKAFNEAHYPDVYAREMLAMKTELPEDR 194
Query: 60 IKFWFQNKRTQTKAQNERANNSVLRAE 86
I+ WFQN+R + + + + S + AE
Sbjct: 195 IQVWFQNRRAKWRKREKCWGRSSVMAE 221
>ZFIN|ZDB-GENE-980526-216 [details] [associations]
symbol:eng1a "engrailed 1a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0000976 "transcription regulatory
region sequence-specific DNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
InterPro:IPR000047 InterPro:IPR000747 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00026
PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
ZFIN:ZDB-GENE-980526-216 GO:GO:0007275 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 GeneTree:ENSGT00680000099870 PROSITE:PS00033
HOVERGEN:HBG005975 InterPro:IPR019549 InterPro:IPR019737
Pfam:PF10525 EMBL:CABZ01070420 EMBL:BC080209 IPI:IPI00500053
UniGene:Dr.75072 SMR:Q68EL7 STRING:Q68EL7
Ensembl:ENSDART00000012506 InParanoid:Q68EL7 Uniprot:Q68EL7
Length = 231
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 3 LGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKF 62
L + + T S +K T T Q+Q L+A F+ + E +R+ L++ELGL+ QIK
Sbjct: 132 LKKKNNNTESDDKRPRTAF--TAEQLQRLKAEFQTSRYITEQRRQALARELGLNESQIKI 189
Query: 63 WFQNKRTQTK 72
WFQNKR + K
Sbjct: 190 WFQNKRAKIK 199
>TAIR|locus:2062754 [details] [associations]
symbol:HB-7 "homeobox 7" species:3702 "Arabidopsis
thaliana" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009409 "response to cold" evidence=RCA] [GO:0009414 "response
to water deprivation" evidence=IEP;RCA] [GO:0009737 "response to
abscisic acid stimulus" evidence=IEP;RCA] [GO:0009738 "abscisic
acid mediated signaling pathway" evidence=IGI;RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR003106 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 Pfam:PF02183 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 GO:GO:0005634
GO:GO:0045893 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009738
GO:GO:0009414 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0000976 eggNOG:NOG252905 HOGENOM:HOG000006310
ProtClustDB:CLSN2683559 EMBL:X67032 EMBL:AC005819 EMBL:AY045826
EMBL:AY091364 IPI:IPI00544746 PIR:H84905 PIR:S47137
RefSeq:NP_182191.1 UniGene:At.136 ProteinModelPortal:P46897
SMR:P46897 STRING:P46897 EnsemblPlants:AT2G46680.1 GeneID:819280
KEGG:ath:AT2G46680 GeneFarm:3966 TAIR:At2g46680 InParanoid:P46897
OMA:THHESEN PhylomeDB:P46897 Genevestigator:P46897 Uniprot:P46897
Length = 258
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 14 NKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73
N K R + QI++LE F+ + ++ QL++ELGL +Q+ WFQNKR + K+
Sbjct: 27 NHNKNNQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKS 86
Query: 74 QNERANNSVLRAENERVHCENLAIR-EALK 102
+ ++LR +N +NLA + E+LK
Sbjct: 87 KQLETEYNILR-QNY----DNLASQFESLK 111
>ZFIN|ZDB-GENE-051030-21 [details] [associations]
symbol:shox "short stature homeobox" species:7955
"Danio rerio" [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000976
"transcription regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
ZFIN:ZDB-GENE-051030-21 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000976
GeneTree:ENSGT00700000104279 EMBL:BX294669 IPI:IPI00742503
Ensembl:ENSDART00000029238 ArrayExpress:F1Q5T6 Bgee:F1Q5T6
Uniprot:F1Q5T6
Length = 304
Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 2 DLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
D+ E + S+ K + + T Q+ LE F + +PD R +LS+ LGL +++
Sbjct: 95 DVKSEDEDAQSKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 154
Query: 62 FWFQNKRTQTKAQNERANNSVL 83
WFQN+R + + Q + + V+
Sbjct: 155 VWFQNRRAKCRKQENQMHKGVI 176
>UNIPROTKB|F6QGM2 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0043066 GO:GO:0030154 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0000988 EMBL:AADN02026398 IPI:IPI00820696
ProteinModelPortal:F6QGM2 Ensembl:ENSGALT00000006259
ArrayExpress:F6QGM2 Uniprot:F6QGM2
Length = 214
Score = 116 (45.9 bits), Expect = 0.00018, P = 0.00018
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 6 EQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
+++A ++ + + T T Q++TL+ + + P P + R QLS E GLD++ ++ WFQ
Sbjct: 147 QREAESTAKRPRTTI---TAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQVWFQ 203
Query: 66 NKRTQTK 72
N+R + K
Sbjct: 204 NRRAKEK 210
>UNIPROTKB|A6NLG4 [details] [associations]
symbol:SHOX2 "cDNA FLJ38019 fis, clone CTONG2012758, highly
similar to Short stature homeobox protein 2" species:9606 "Homo
sapiens" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 EMBL:CH471052
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
HOGENOM:HOG000231518 InterPro:IPR003654 Pfam:PF03826
PROSITE:PS50803 GO:GO:0000976 UniGene:Hs.55967 HGNC:HGNC:10854
HOVERGEN:HBG007233 NextBio:25151 EMBL:AC112502 EMBL:AK095338
IPI:IPI01024865 SMR:A6NLG4 STRING:A6NLG4 Ensembl:ENST00000441443
Ensembl:ENST00000490689 Uniprot:A6NLG4
Length = 190
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 7 QDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQN 66
+D ++ K + + T Q+ LE F + +PD R +LS+ LGL +++ WFQN
Sbjct: 2 EDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN 61
Query: 67 KRTQTKAQNERANNSVL 83
+R + + Q + + VL
Sbjct: 62 RRAKCRKQENQLHKGVL 78
>UNIPROTKB|Q0P031 [details] [associations]
symbol:vsx1 "Visual system homeobox 1" species:8355
"Xenopus laevis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0060040 "retinal bipolar
neuron differentiation" evidence=IEP] InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0060040 InterPro:IPR023339 PROSITE:PS51496 CTD:30813
HOVERGEN:HBG036251 KO:K09335 EMBL:DQ324366 RefSeq:NP_001090191.1
UniGene:Xl.12402 ProteinModelPortal:Q0P031 SMR:Q0P031 GeneID:779073
KEGG:xla:779073 Xenbase:XB-GENE-866467 Uniprot:Q0P031
Length = 344
Score = 120 (47.3 bits), Expect = 0.00022, P = 0.00022
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 3 LGDEQD--ATNSQNKGKITCHR--HTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLK 58
LGD+ D A+++Q+K K HR T HQ+ LE F + +PD R L+ + L
Sbjct: 133 LGDKNDLKASSAQSKRKKRRHRTVFTAHQLDELEKSFNEAHYPDVYAREMLALKTELPED 192
Query: 59 QIKFWFQNKRTQTKAQNERANNSVLRAE 86
+I+ WFQN+R + + + + S + AE
Sbjct: 193 RIQVWFQNRRAKWRKREKCWGRSSVMAE 220
>UNIPROTKB|I3L383 [details] [associations]
symbol:HOXB8 "Homeobox protein Hox-B8" species:9606 "Homo
sapiens" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 EMBL:AC103702 HGNC:HGNC:5119 Ensembl:ENST00000498634
Uniprot:I3L383
Length = 128
Score = 99 (39.9 bits), Expect = 0.00022, P = 0.00022
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 23 HTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERANNSV 82
++ +Q LE F P+ +R ++S LGL +Q+K WFQN+R + K +N +
Sbjct: 2 YSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPS 61
Query: 83 LRAENERVHCENL 95
+ E E + + L
Sbjct: 62 SKCEQEELEKQKL 74
>WB|WBGene00013147 [details] [associations]
symbol:eyg-1 species:6239 "Caenorhabditis elegans"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001356
InterPro:IPR001523 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 Pfam:PF00292 PROSITE:PS00027 PROSITE:PS50071
PROSITE:PS51057 SMART:SM00351 SMART:SM00389 GO:GO:0007275
GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:Z95623 GeneTree:ENSGT00680000099553 HSSP:Q02548 PIR:T27137
RefSeq:NP_496116.1 UniGene:Cel.13954 ProteinModelPortal:O01996
SMR:O01996 EnsemblMetazoa:Y53C12C.1 GeneID:190204
KEGG:cel:CELE_Y53C12C.1 UCSC:Y53C12C.1 CTD:190204
WormBase:Y53C12C.1 eggNOG:NOG245626 HOGENOM:HOG000016193
InParanoid:O01996 OMA:QMILSAQ NextBio:944960 Uniprot:O01996
Length = 314
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 6 EQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
E D+T N +++ T Q+Q+LE F P+P N+R L K L +I+ WF
Sbjct: 193 EDDSTLGANARRLSRSTFTNEQLQSLEEVFLRDPYPSPNERADLVKRTNLPEARIQVWFS 252
Query: 66 NKRTQTKAQNERANN-SVLRAE 86
N+R + + N ++ LRAE
Sbjct: 253 NRRAKWRKTNANGSDRDELRAE 274
>UNIPROTKB|I3L828 [details] [associations]
symbol:SHOX2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:2000172 "regulation
of branching morphogenesis of a nerve" evidence=IEA] [GO:0060415
"muscle tissue morphogenesis" evidence=IEA] [GO:0060351 "cartilage
development involved in endochondral bone morphogenesis"
evidence=IEA] [GO:0060272 "embryonic skeletal joint morphogenesis"
evidence=IEA] [GO:0050772 "positive regulation of axonogenesis"
evidence=IEA] [GO:0048743 "positive regulation of skeletal muscle
fiber development" evidence=IEA] [GO:0048557 "embryonic digestive
tract morphogenesis" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045880 "positive regulation of smoothened signaling pathway"
evidence=IEA] [GO:0032330 "regulation of chondrocyte
differentiation" evidence=IEA] [GO:0030326 "embryonic limb
morphogenesis" evidence=IEA] [GO:0003209 "cardiac atrium
morphogenesis" evidence=IEA] [GO:0003170 "heart valve development"
evidence=IEA] [GO:0002063 "chondrocyte development" evidence=IEA]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IEA] [GO:0001649 "osteoblast differentiation"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122 GO:GO:0030326
GO:GO:0050772 GO:GO:0032330 GO:GO:0001649 InterPro:IPR003654
Pfam:PF03826 PROSITE:PS50803 GO:GO:0000976
GeneTree:ENSGT00700000104279 GO:GO:0060272 GO:GO:0002053
GO:GO:0048743 GO:GO:0060351 GO:GO:0002063 GO:GO:0045880
GO:GO:0003209 GO:GO:0048557 GO:GO:0060415 GO:GO:2000172 CTD:6474
KO:K09331 OMA:CTEAGRD GO:GO:0003170 EMBL:FP312663
RefSeq:NP_001230281.1 UniGene:Ssc.38718 Ensembl:ENSSSCT00000025053
GeneID:100628206 KEGG:ssc:100628206 Uniprot:I3L828
Length = 321
Score = 119 (46.9 bits), Expect = 0.00025, P = 0.00025
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 2 DLGD-EQDATNSQNKG--KITCHRHTTH----QIQTLEAFFKDCPHPDENQRRQLSKELG 54
+L D ++DA +++G KI R T+ Q+ LE F + +PD R +LS+ LG
Sbjct: 121 ELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG 180
Query: 55 LDLKQIKFWFQNKRTQTKAQNERANNSVL 83
L +++ WFQN+R + + Q + + VL
Sbjct: 181 LSEARVQVWFQNRRAKCRKQENQLHKGVL 209
>UNIPROTKB|F1S681 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0021526 "medial
motor column neuron differentiation" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 Gene3D:2.10.110.10
GO:GO:0008045 GeneTree:ENSGT00700000104177 GO:GO:0021526
OMA:LSFRDDQ EMBL:CU855640 EMBL:FP476046 Ensembl:ENSSSCT00000016925
Uniprot:F1S681
Length = 369
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72
T Q++TL+ +K+ P P + R QLS E GLD++ ++ WFQN+R + K
Sbjct: 144 TAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK 192
>UNIPROTKB|E1BLB9 [details] [associations]
symbol:E1BLB9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:2000172 "regulation
of branching morphogenesis of a nerve" evidence=IEA] [GO:0060415
"muscle tissue morphogenesis" evidence=IEA] [GO:0060351 "cartilage
development involved in endochondral bone morphogenesis"
evidence=IEA] [GO:0060272 "embryonic skeletal joint morphogenesis"
evidence=IEA] [GO:0050772 "positive regulation of axonogenesis"
evidence=IEA] [GO:0048743 "positive regulation of skeletal muscle
fiber development" evidence=IEA] [GO:0048557 "embryonic digestive
tract morphogenesis" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045880 "positive regulation of smoothened signaling pathway"
evidence=IEA] [GO:0032330 "regulation of chondrocyte
differentiation" evidence=IEA] [GO:0030326 "embryonic limb
morphogenesis" evidence=IEA] [GO:0003209 "cardiac atrium
morphogenesis" evidence=IEA] [GO:0003170 "heart valve development"
evidence=IEA] [GO:0002063 "chondrocyte development" evidence=IEA]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IEA] [GO:0001649 "osteoblast differentiation"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122 GO:GO:0030326
GO:GO:0050772 GO:GO:0032330 GO:GO:0001649 InterPro:IPR003654
Pfam:PF03826 PROSITE:PS50803 GO:GO:0000976
GeneTree:ENSGT00700000104279 GO:GO:0060272 GO:GO:0002053
GO:GO:0048743 GO:GO:0060351 GO:GO:0002063 GO:GO:0045880
GO:GO:0003209 GO:GO:0048557 GO:GO:0060415 GO:GO:2000172 OMA:CTEAGRD
GO:GO:0003170 EMBL:DAAA02002472 IPI:IPI00838807 UniGene:Bt.59425
Ensembl:ENSBTAT00000044731 NextBio:20874258 Uniprot:E1BLB9
Length = 331
Score = 119 (46.9 bits), Expect = 0.00026, P = 0.00026
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 2 DLGD-EQDATNSQNKG--KITCHRHTTH----QIQTLEAFFKDCPHPDENQRRQLSKELG 54
+L D ++DA +++G KI R T+ Q+ LE F + +PD R +LS+ LG
Sbjct: 119 ELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG 178
Query: 55 LDLKQIKFWFQNKRTQTKAQNERANNSVL 83
L +++ WFQN+R + + Q + + VL
Sbjct: 179 LSEARVQVWFQNRRAKCRKQENQLHKGVL 207
>UNIPROTKB|O60902 [details] [associations]
symbol:SHOX2 "Short stature homeobox protein 2"
species:9606 "Homo sapiens" [GO:0000976 "transcription regulatory
region sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0001649
"osteoblast differentiation" evidence=IEA] [GO:0002053 "positive
regulation of mesenchymal cell proliferation" evidence=IEA]
[GO:0002063 "chondrocyte development" evidence=IEA] [GO:0003170
"heart valve development" evidence=IEA] [GO:0003209 "cardiac atrium
morphogenesis" evidence=IEA] [GO:0030326 "embryonic limb
morphogenesis" evidence=IEA] [GO:0032330 "regulation of chondrocyte
differentiation" evidence=IEA] [GO:0045880 "positive regulation of
smoothened signaling pathway" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0048557 "embryonic digestive tract morphogenesis"
evidence=IEA] [GO:0048743 "positive regulation of skeletal muscle
fiber development" evidence=IEA] [GO:0050772 "positive regulation
of axonogenesis" evidence=IEA] [GO:0060272 "embryonic skeletal
joint morphogenesis" evidence=IEA] [GO:0060351 "cartilage
development involved in endochondral bone morphogenesis"
evidence=IEA] [GO:0060415 "muscle tissue morphogenesis"
evidence=IEA] [GO:2000172 "regulation of branching morphogenesis of
a nerve" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0001501 "skeletal system development" evidence=TAS] [GO:0007399
"nervous system development" evidence=TAS] [GO:0007507 "heart
development" evidence=TAS] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 GO:GO:0005634
GO:GO:0007399 GO:GO:0007507 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0001501 HOGENOM:HOG000231518
InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803 GO:GO:0000976
EMBL:AJ002367 EMBL:AJ002368 EMBL:BC008829 EMBL:AF022654
EMBL:AF023203 IPI:IPI00218369 IPI:IPI00295006 IPI:IPI00793628
RefSeq:NP_001157150.1 RefSeq:NP_003021.3 RefSeq:NP_006875.2
UniGene:Hs.55967 ProteinModelPortal:O60902 SMR:O60902 IntAct:O60902
STRING:O60902 PhosphoSite:O60902 PaxDb:O60902 PRIDE:O60902
DNASU:6474 Ensembl:ENST00000389589 Ensembl:ENST00000425436
GeneID:6474 KEGG:hsa:6474 UCSC:uc003fbr.3 UCSC:uc003fbs.3
UCSC:uc010hvw.3 CTD:6474 GeneCards:GC03M157813 HGNC:HGNC:10854
MIM:602504 neXtProt:NX_O60902 PharmGKB:PA35756 eggNOG:NOG113578
HOVERGEN:HBG007233 InParanoid:O60902 KO:K09331 OMA:CTEAGRD
OrthoDB:EOG41C6X2 GenomeRNAi:6474 NextBio:25151 ArrayExpress:O60902
Bgee:O60902 CleanEx:HS_SHOX2 Genevestigator:O60902
GermOnline:ENSG00000168779 Uniprot:O60902
Length = 331
Score = 119 (46.9 bits), Expect = 0.00026, P = 0.00026
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 2 DLGD-EQDATNSQNKG--KITCHRHTTH----QIQTLEAFFKDCPHPDENQRRQLSKELG 54
+L D ++DA +++G KI R T+ Q+ LE F + +PD R +LS+ LG
Sbjct: 119 ELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG 178
Query: 55 LDLKQIKFWFQNKRTQTKAQNERANNSVL 83
L +++ WFQN+R + + Q + + VL
Sbjct: 179 LSEARVQVWFQNRRAKCRKQENQLHKGVL 207
>UNIPROTKB|F1MFM7 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0021526 "medial
motor column neuron differentiation" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 Gene3D:2.10.110.10
GO:GO:0008045 GeneTree:ENSGT00700000104177 KO:K09374 GO:GO:0021526
CTD:89884 OMA:LSFRDDQ EMBL:DAAA02043487 EMBL:DAAA02043488
EMBL:DAAA02043489 EMBL:DAAA02043490 IPI:IPI00695061
RefSeq:NP_001179714.1 UniGene:Bt.60930 Ensembl:ENSBTAT00000005216
GeneID:540797 KEGG:bta:540797 NextBio:20878839 Uniprot:F1MFM7
Length = 390
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72
T Q++TL+ +K+ P P + R QLS E GLD++ ++ WFQN+R + K
Sbjct: 165 TAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK 213
>UNIPROTKB|Q969G2 [details] [associations]
symbol:LHX4 "LIM/homeobox protein Lhx4" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887
Gene3D:2.10.110.10 GO:GO:0008045 EMBL:AL139141 Orphanet:226307
Orphanet:95496 eggNOG:NOG275246 HOGENOM:HOG000231629 KO:K09374
HOVERGEN:HBG006263 OrthoDB:EOG4SBDZ0 GO:GO:0021526 EMBL:AY053457
EMBL:AF179849 EMBL:AF405430 EMBL:AF405425 EMBL:AF405426
EMBL:AF405427 EMBL:AF405428 EMBL:AF405429 EMBL:BC011759
EMBL:AB055703 EMBL:AB037683 EMBL:AF282899 EMBL:AH011598
IPI:IPI00169275 RefSeq:NP_203129.1 UniGene:Hs.658487
ProteinModelPortal:Q969G2 SMR:Q969G2 IntAct:Q969G2 STRING:Q969G2
DMDM:209572644 PRIDE:Q969G2 DNASU:89884 Ensembl:ENST00000263726
GeneID:89884 KEGG:hsa:89884 UCSC:uc001goe.2 CTD:89884
GeneCards:GC01P180199 HGNC:HGNC:21734 MIM:262700 MIM:602146
neXtProt:NX_Q969G2 Orphanet:85442 PharmGKB:PA134962876
InParanoid:Q969G2 OMA:LSFRDDQ PhylomeDB:Q969G2 GenomeRNAi:89884
NextBio:76401 ArrayExpress:Q969G2 Bgee:Q969G2 CleanEx:HS_LHX4
Genevestigator:Q969G2 GermOnline:ENSG00000121454 Uniprot:Q969G2
Length = 390
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72
T Q++TL+ +K+ P P + R QLS E GLD++ ++ WFQN+R + K
Sbjct: 165 TAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK 213
>MGI|MGI:101776 [details] [associations]
symbol:Lhx4 "LIM homeobox protein 4" species:10090 "Mus
musculus" [GO:0001890 "placenta development" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IMP]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IGI] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:101776 GO:GO:0005634 GO:GO:0043066
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009887 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0001890
eggNOG:NOG275246 GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629
KO:K09374 PDB:3MMK PDBsum:3MMK HOVERGEN:HBG006263 OrthoDB:EOG4SBDZ0
GO:GO:0021526 CTD:89884 OMA:LSFRDDQ EMBL:BC049834 EMBL:AF135415
EMBL:U89343 EMBL:S71659 IPI:IPI00134772 PIR:S46332
RefSeq:NP_034842.2 UniGene:Mm.103624 UniGene:Mm.351266
ProteinModelPortal:P53776 SMR:P53776 STRING:P53776 PRIDE:P53776
Ensembl:ENSMUST00000027740 GeneID:16872 KEGG:mmu:16872
UCSC:uc007dbn.2 InParanoid:P53776 NextBio:290842 Bgee:P53776
CleanEx:MM_LHX4 Genevestigator:P53776 GermOnline:ENSMUSG00000026468
Uniprot:P53776
Length = 390
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72
T Q++TL+ +K+ P P + R QLS E GLD++ ++ WFQN+R + K
Sbjct: 165 TAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK 213
>UNIPROTKB|F1PCI5 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887
Gene3D:2.10.110.10 GO:GO:0008045 GeneTree:ENSGT00700000104177
GO:GO:0021526 OMA:LSFRDDQ EMBL:AAEX03005118 EMBL:AAEX03005119
Ensembl:ENSCAFT00000031328 Uniprot:F1PCI5
Length = 395
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72
T Q++TL+ +K+ P P + R QLS E GLD++ ++ WFQN+R + K
Sbjct: 170 TAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK 218
>ZFIN|ZDB-GENE-980526-484 [details] [associations]
symbol:lhx5 "LIM homeobox 5" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IMP;IDA] [GO:0001654 "eye development" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-484 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0030900 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001654
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F EMBL:L42547
EMBL:BC098523 IPI:IPI00509409 RefSeq:NP_571293.1 UniGene:Dr.75068
ProteinModelPortal:P52889 SMR:P52889 STRING:P52889
Ensembl:ENSDART00000080693 GeneID:30465 KEGG:dre:30465 CTD:64211
InParanoid:P52889 OMA:SHQGQEM NextBio:20806859 Bgee:P52889
Uniprot:P52889
Length = 399
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 6 EQDATNSQNKGKITCHRH----TT---HQIQTLEAFFKDCPHPDENQRRQLSKELGLDLK 58
++D N++N+ + +C + TT Q++TL+A F P P + R QL++E GL+++
Sbjct: 163 DKDTNNNENEEQNSCTKRRGPRTTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMR 222
Query: 59 QIKFWFQNKRTQTKAQNE 76
I+ WFQN+R++ + +
Sbjct: 223 VIQVWFQNRRSKERRMKQ 240
>UNIPROTKB|P14839 [details] [associations]
symbol:HOXB6 "Homeobox protein Hox-B6" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00032 PROSITE:PS50071
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 InterPro:IPR020479
PRINTS:PR00024 SUPFAM:SSF46689 EMBL:X16847 IPI:IPI00589688
PIR:S08303 ProteinModelPortal:P14839 SMR:P14839 Uniprot:P14839
Length = 84
Score = 98 (39.6 bits), Expect = 0.00029, P = 0.00029
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 23 HTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERANNSV 82
+T +Q LE F + +R +++ L L +QIK WFQN+R + K +N+ ++S
Sbjct: 14 YTRYQTLELEKEFHFNRYLTRRRRIEIAHSLCLTERQIKIWFQNRRMKWKKENKLLSSSQ 73
Query: 83 LRAENERVHCE 93
L AE E E
Sbjct: 74 LSAEEEEKTAE 84
>RGD|2320224 [details] [associations]
symbol:LOC100364841 "rCG53272-like" species:10116 "Rattus
norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 RGD:2320224 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GeneTree:ENSGT00530000063899
IPI:IPI00959398 Ensembl:ENSRNOT00000035489 Uniprot:F1M524
Length = 96
Score = 98 (39.6 bits), Expect = 0.00029, P = 0.00029
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNER 77
T Q++ +E F++ P+PD R +L++ L + ++K WF N+R + + +NER
Sbjct: 20 TQWQVEEMENLFEETPYPDVLTRGELARTLNVPEVKVKVWFSNRRAKQR-KNER 72
>UNIPROTKB|H0YLI9 [details] [associations]
symbol:SHOX "Short stature homeobox protein" species:9606
"Homo sapiens" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000976 EMBL:BX004827
HGNC:HGNC:10853 ProteinModelPortal:H0YLI9 SMR:H0YLI9
Ensembl:ENST00000558872 Bgee:H0YLI9 Uniprot:H0YLI9
Length = 225
Score = 115 (45.5 bits), Expect = 0.00029, P = 0.00029
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 2 DLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
D+ E + ++ K + + T Q+ LE F + +PD R +LS+ LGL +++
Sbjct: 103 DVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 162
Query: 62 FWFQNKRTQTKAQNERANNSVL 83
WFQN+R + + Q + + V+
Sbjct: 163 VWFQNRRAKCRKQENQMHKGVI 184
>ZFIN|ZDB-GENE-070810-7 [details] [associations]
symbol:nkx6.3 "NK6 homeobox 3" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000976 "transcription
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
ZFIN:ZDB-GENE-070810-7 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 GeneTree:ENSGT00680000099625 EMBL:BX571947
IPI:IPI00996504 Ensembl:ENSDART00000125516 Bgee:F1R8I3
Uniprot:F1R8I3
Length = 273
Score = 117 (46.2 bits), Expect = 0.00029, P = 0.00029
Identities = 34/101 (33%), Positives = 49/101 (48%)
Query: 4 GDEQDATNSQNK-GKITCH--RHTT-----HQIQTLEAFFKDCPHPDENQRRQLSKELGL 55
G Q NS+N TCH +HT HQI LE F+ + +R +L+ LG+
Sbjct: 132 GARQQCGNSKNNLNNHTCHNVQHTRPTFSGHQIFALEKTFEQTKYLAGPERARLAYSLGM 191
Query: 56 DLKQIKFWFQNKRTQ--TKAQNERANNSVLRAENERVHCEN 94
Q+K WFQN+RT+ K+ E ++ R E+ EN
Sbjct: 192 TESQVKVWFQNRRTKWRKKSATEPSSTQTSRGESAGDGSEN 232
>UNIPROTKB|F6Y4K5 [details] [associations]
symbol:SHOX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803
GO:GO:0000976 GeneTree:ENSGT00700000104279 CTD:6474 KO:K09331
OMA:CTEAGRD EMBL:AAEX03013721 Ensembl:ENSCAFT00000014128
RefSeq:XP_003639881.1 GeneID:485732 KEGG:cfa:485732 Uniprot:F6Y4K5
Length = 319
Score = 118 (46.6 bits), Expect = 0.00032, P = 0.00032
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 6 EQDATNSQNKG--KITCHRHTTH----QIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQ 59
++DA +++G KI R T+ Q+ LE F + +PD R +LS+ LGL +
Sbjct: 124 KEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEAR 183
Query: 60 IKFWFQNKRTQTKAQNERANNSVL 83
++ WFQN+R + + Q + + VL
Sbjct: 184 VQVWFQNRRAKCRKQENQLHKGVL 207
>UNIPROTKB|E2QZN5 [details] [associations]
symbol:SHOX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803
GO:GO:0000976 Ensembl:ENSCAFT00000014128 Uniprot:E2QZN5
Length = 334
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 6 EQDATNSQNKG--KITCHRHTTH----QIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQ 59
++DA +++G KI R T+ Q+ LE F + +PD R +LS+ LGL +
Sbjct: 127 KEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEAR 186
Query: 60 IKFWFQNKRTQTKAQNERANNSVL 83
++ WFQN+R + + Q + + VL
Sbjct: 187 VQVWFQNRRAKCRKQENQLHKGVL 210
>UNIPROTKB|F1P4U7 [details] [associations]
symbol:HOXD11 "Homeobox protein Hox-D11" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001656 "metanephros development" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0001759 "organ induction" evidence=IEA]
[GO:0009952 "anterior/posterior pattern specification"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IEA] [GO:0009954 "proximal/distal pattern formation"
evidence=IEA] [GO:0010720 "positive regulation of cell development"
evidence=IEA] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=IEA] [GO:0042733 "embryonic digit
morphogenesis" evidence=IEA] [GO:0048589 "developmental growth"
evidence=IEA] [GO:0060272 "embryonic skeletal joint morphogenesis"
evidence=IEA] [GO:0060351 "cartilage development involved in
endochondral bone morphogenesis" evidence=IEA] InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0043565
GO:GO:0003700 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 GO:GO:0032332 GO:GO:0048589 GO:GO:0001759
GO:GO:0010720 GeneTree:ENSGT00700000104263 IPI:IPI00583692
EMBL:AADN02020032 Ensembl:ENSGALT00000015085 Uniprot:F1P4U7
Length = 109
Score = 97 (39.2 bits), Expect = 0.00037, P = 0.00037
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72
Q K C +T +QI+ LE F + ++ +R QLS+ L L +Q+K WFQN+R + K
Sbjct: 35 QRSRKKRCP-YTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEK 93
Query: 73 AQN 75
N
Sbjct: 94 KLN 96
>TAIR|locus:2040520 [details] [associations]
symbol:HB22 "homeobox protein 22" species:3702
"Arabidopsis thaliana" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003700 GO:GO:0006351 EMBL:AC006919 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0000976 KO:K09338 HOGENOM:HOG000006025
EMBL:AC006282 EMBL:DQ056569 IPI:IPI00527137 PIR:E84782
RefSeq:NP_850266.1 UniGene:At.53052 ProteinModelPortal:Q4PSR7
SMR:Q4PSR7 EnsemblPlants:AT2G36610.1 GeneID:818233
KEGG:ath:AT2G36610 GeneFarm:3964 TAIR:At2g36610 eggNOG:NOG297545
InParanoid:Q4PSR7 OMA:MEYWSSS PhylomeDB:Q4PSR7
ProtClustDB:CLSN2918190 Genevestigator:Q4PSR7 GermOnline:AT2G36610
Uniprot:Q4PSR7
Length = 185
Score = 111 (44.1 bits), Expect = 0.00039, P = 0.00039
Identities = 37/107 (34%), Positives = 58/107 (54%)
Query: 4 GDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKD--CPHPDE------NQRRQLSKELGL 55
G+E ++ N Q K K + T+ Q++ LE F++ +PD +++ +LSKELGL
Sbjct: 59 GEESNSFNGQEKKK---KKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGL 115
Query: 56 DLKQIKFWFQNKRTQTK-AQNERANNSVLRAENERVHCENLAIREAL 101
+QI WFQN++ + K Q E S LR E + V E ++E L
Sbjct: 116 QPRQIAVWFQNRKARWKNKQLEHLYES-LRQEFDIVSREKELLQEEL 161
>MGI|MGI:1201673 [details] [associations]
symbol:Shox2 "short stature homeobox 2" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0000976
"transcription regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001649 "osteoblast differentiation"
evidence=IMP] [GO:0002053 "positive regulation of mesenchymal cell
proliferation" evidence=IMP] [GO:0002062 "chondrocyte
differentiation" evidence=IMP] [GO:0002063 "chondrocyte
development" evidence=IMP] [GO:0003170 "heart valve development"
evidence=IMP] [GO:0003209 "cardiac atrium morphogenesis"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0030326 "embryonic limb morphogenesis" evidence=IMP]
[GO:0032330 "regulation of chondrocyte differentiation"
evidence=IMP] [GO:0035115 "embryonic forelimb morphogenesis"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045880 "positive regulation of smoothened
signaling pathway" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0048557 "embryonic digestive tract morphogenesis" evidence=IMP]
[GO:0048598 "embryonic morphogenesis" evidence=IMP] [GO:0048743
"positive regulation of skeletal muscle fiber development"
evidence=IMP] [GO:0050772 "positive regulation of axonogenesis"
evidence=IMP] [GO:0060272 "embryonic skeletal joint morphogenesis"
evidence=IMP] [GO:0060351 "cartilage development involved in
endochondral bone morphogenesis" evidence=IMP] [GO:0060415 "muscle
tissue morphogenesis" evidence=IMP] [GO:2000172 "regulation of
branching morphogenesis of a nerve" evidence=IMP]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 EMBL:U66918 MGI:MGI:1201673
GO:GO:0005634 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0000122 GO:GO:0030326 GO:GO:0050772
GO:GO:0032330 GO:GO:0001649 HOGENOM:HOG000231518 InterPro:IPR003654
Pfam:PF03826 PROSITE:PS50803 GO:GO:0000976
GeneTree:ENSGT00700000104279 GO:GO:0060272 GO:GO:0002053
GO:GO:0048743 GO:GO:0060351 GO:GO:0002063 GO:GO:0045880
GO:GO:0003209 GO:GO:0048557 GO:GO:0060415 GO:GO:2000172 CTD:6474
eggNOG:NOG113578 HOVERGEN:HBG007233 KO:K09331 OMA:CTEAGRD
OrthoDB:EOG41C6X2 EMBL:U67055 EMBL:U65071 EMBL:U65072
IPI:IPI00230342 IPI:IPI00625691 RefSeq:NP_038693.1 UniGene:Mm.39093
ProteinModelPortal:P70390 SMR:P70390 STRING:P70390
PhosphoSite:P70390 PRIDE:P70390 Ensembl:ENSMUST00000029422
Ensembl:ENSMUST00000162060 Ensembl:ENSMUST00000162439 GeneID:20429
KEGG:mmu:20429 UCSC:uc008pld.1 UCSC:uc008ple.1 InParanoid:P70390
NextBio:298446 Bgee:P70390 CleanEx:MM_SHOX2 Genevestigator:P70390
GermOnline:ENSMUSG00000027833 GO:GO:0003170 Uniprot:P70390
Length = 331
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 2 DLGDEQD-ATNSQNKG--KITCHRHTTH----QIQTLEAFFKDCPHPDENQRRQLSKELG 54
+L D +D A +++G KI R T+ Q+ LE F + +PD R +LS+ LG
Sbjct: 119 ELKDRKDDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG 178
Query: 55 LDLKQIKFWFQNKRTQTKAQNERANNSVL 83
L +++ WFQN+R + + Q + + VL
Sbjct: 179 LSEARVQVWFQNRRAKCRKQENQLHKGVL 207
>RGD|1595784 [details] [associations]
symbol:Hoxc9 "homeobox C9" species:10116 "Rattus norvegicus"
[GO:0000976 "transcription regulatory region sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0048704 "embryonic skeletal system
morphogenesis" evidence=IEA;ISO] [GO:0048706 "embryonic skeletal
system development" evidence=ISO] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS00032
PROSITE:PS50071 SMART:SM00389 RGD:1595784 GO:GO:0007275
GO:GO:0005634 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689 GO:GO:0000976
eggNOG:NOG314669 EMBL:S76301 EMBL:M37568 IPI:IPI01016344 PIR:D43559
UniGene:Rn.91646 ProteinModelPortal:P18866 SMR:P18866 STRING:P18866
UCSC:RGD:1595784 HOVERGEN:HBG107057 Genevestigator:P18866
Uniprot:P18866
Length = 108
Score = 96 (38.9 bits), Expect = 0.00047, P = 0.00047
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72
+ G+ T R+ T +++ E F P+ +R ++S LGL +Q+K WFQN+R + K
Sbjct: 15 RRSGRQTYSRYQTLELEK-EFLFN--PYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWK 71
Query: 73 AQNERANNSVLRAENERVHCE 93
+N + R E E+V E
Sbjct: 72 KENNKDKLPGARDE-EKVEEE 91
>UNIPROTKB|P18866 [details] [associations]
symbol:Hoxc8 "Homeobox protein Hox-C8" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS00032 PROSITE:PS50071 SMART:SM00389
RGD:1595784 GO:GO:0007275 GO:GO:0005634 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 eggNOG:NOG314669 EMBL:S76301 EMBL:M37568
IPI:IPI01016344 PIR:D43559 UniGene:Rn.91646
ProteinModelPortal:P18866 SMR:P18866 STRING:P18866 UCSC:RGD:1595784
HOVERGEN:HBG107057 Genevestigator:P18866 Uniprot:P18866
Length = 108
Score = 96 (38.9 bits), Expect = 0.00047, P = 0.00047
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72
+ G+ T R+ T +++ E F P+ +R ++S LGL +Q+K WFQN+R + K
Sbjct: 15 RRSGRQTYSRYQTLELEK-EFLFN--PYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWK 71
Query: 73 AQNERANNSVLRAENERVHCE 93
+N + R E E+V E
Sbjct: 72 KENNKDKLPGARDE-EKVEEE 91
>UNIPROTKB|H0YMR3 [details] [associations]
symbol:SHOX "Short stature homeobox protein" species:9606
"Homo sapiens" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000976 EMBL:BX004827
HGNC:HGNC:10853 ProteinModelPortal:H0YMR3 SMR:H0YMR3
Ensembl:ENST00000560001 Bgee:H0YMR3 Uniprot:H0YMR3
Length = 279
Score = 115 (45.5 bits), Expect = 0.00052, P = 0.00052
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 2 DLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
D+ E + ++ K + + T Q+ LE F + +PD R +LS+ LGL +++
Sbjct: 103 DVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 162
Query: 62 FWFQNKRTQTKAQNERANNSVL 83
WFQN+R + + Q + + V+
Sbjct: 163 VWFQNRRAKCRKQENQMHKGVI 184
>UNIPROTKB|Q05917 [details] [associations]
symbol:EN2 "Homeobox protein engrailed-2" species:9031
"Gallus gallus" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IDA] [GO:0030426 "growth cone" evidence=IDA]
[GO:0030175 "filopodium" evidence=IDA] [GO:0030027 "lamellipodium"
evidence=IDA] [GO:0043005 "neuron projection" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0042327 "positive regulation of phosphorylation" evidence=IDA]
InterPro:IPR000047 InterPro:IPR000747 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00026
PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
GO:GO:0005634 GO:GO:0007411 GO:GO:0003700 GO:GO:0030027
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0030175 GO:GO:0030426 GO:GO:0045727 GO:GO:0000976
GO:GO:0042327 PROSITE:PS00033 HOVERGEN:HBG005975 InterPro:IPR019549
InterPro:IPR019737 Pfam:PF10525 KO:K09319 EMBL:L12696 EMBL:L12697
IPI:IPI00579837 PIR:F48423 RefSeq:NP_001254648.1 UniGene:Gga.56328
GeneID:100859435 KEGG:gga:100859435 CTD:2020 Uniprot:Q05917
Length = 289
Score = 115 (45.5 bits), Expect = 0.00056, P = 0.00056
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 11 NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQ 70
N ++K T T Q+Q L+A F+ + E +R+ L++ELGL+ QIK WFQNKR +
Sbjct: 197 NKEDKRPRTAF--TAEQLQRLKAEFQTNRYLTEQRRQSLAQELGLNESQIKIWFQNKRAK 254
Query: 71 TKAQNERANN 80
K N+
Sbjct: 255 IKKATGSKNS 264
>UNIPROTKB|G3V2N3 [details] [associations]
symbol:PRRX1 "Paired mesoderm homeobox protein 1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
GO:GO:0005730 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:Z97200 HGNC:HGNC:9142 ChiTaRS:PRRX1
ProteinModelPortal:G3V2N3 SMR:G3V2N3 Ensembl:ENST00000497230
ArrayExpress:G3V2N3 Bgee:G3V2N3 Uniprot:G3V2N3
Length = 200
Score = 107 (42.7 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 6 EQDATNSQNKGKITCHRHTT----HQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
+ D NS+ K K R+ T Q+Q LE F+ +PD R L++ + L +++
Sbjct: 80 DNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQ 139
Query: 62 FWFQNKRTQTKAQNERA 78
WFQN+R + + +NERA
Sbjct: 140 VWFQNRRAKFR-RNERA 155
Score = 40 (19.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 152 ICQMNSSLMPSLPGSAILEHQNVLPPP 178
+ N+SL+ S G Q ++P P
Sbjct: 157 LANKNASLLKSYSGDVTAVEQPIVPRP 183
>UNIPROTKB|F1Q361 [details] [associations]
symbol:SHOX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803
GO:GO:0000976 GeneTree:ENSGT00700000104279 OMA:SNHCPVH
EMBL:AAEX03026084 Ensembl:ENSCAFT00000017459 Uniprot:F1Q361
Length = 291
Score = 115 (45.5 bits), Expect = 0.00057, P = 0.00057
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 2 DLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
D+ E + ++ K + + T Q+ LE F + +PD R +LS+ LGL +++
Sbjct: 102 DVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 161
Query: 62 FWFQNKRTQTKAQNERANNSVL 83
WFQN+R + + Q + + V+
Sbjct: 162 VWFQNRRAKCRKQENQMHKGVI 183
>UNIPROTKB|O15266 [details] [associations]
symbol:SHOX "Short stature homeobox protein" species:9606
"Homo sapiens" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0001501 "skeletal system development" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006366 GO:GO:0001501 HOGENOM:HOG000231518
InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803 GO:GO:0000976
Orphanet:137693 eggNOG:NOG113578 HOVERGEN:HBG007233 KO:K09331
OrthoDB:EOG41C6X2 EMBL:Y11536 EMBL:Y11535 EMBL:U82668 EMBL:U89331
EMBL:BX004827 IPI:IPI00005744 IPI:IPI00411417 RefSeq:NP_000442.1
RefSeq:NP_006874.1 UniGene:Hs.105932 ProteinModelPortal:O15266
SMR:O15266 IntAct:O15266 STRING:O15266 PhosphoSite:O15266
PRIDE:O15266 DNASU:6473 Ensembl:ENST00000334060
Ensembl:ENST00000381575 Ensembl:ENST00000381578
Ensembl:ENST00000554971 GeneID:6473 KEGG:hsa:6473 UCSC:uc004cph.1
UCSC:uc004cpi.3 CTD:6473 GeneCards:GC0XP000585 HGNC:HGNC:10853
MIM:127300 MIM:249700 MIM:300582 MIM:312865 MIM:400020
neXtProt:NX_O15266 Orphanet:2632 Orphanet:240 PharmGKB:PA134978644
InParanoid:O15266 OMA:SNHCPVH PhylomeDB:O15266 GenomeRNAi:6473
NextBio:25145 Bgee:O15266 CleanEx:HS_SHOX Genevestigator:O15266
Uniprot:O15266
Length = 292
Score = 115 (45.5 bits), Expect = 0.00057, P = 0.00057
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 2 DLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
D+ E + ++ K + + T Q+ LE F + +PD R +LS+ LGL +++
Sbjct: 103 DVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 162
Query: 62 FWFQNKRTQTKAQNERANNSVL 83
WFQN+R + + Q + + V+
Sbjct: 163 VWFQNRRAKCRKQENQMHKGVI 184
>UNIPROTKB|K7GS77 [details] [associations]
symbol:LOC100520816 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR003654
Pfam:PF03826 PROSITE:PS50803 GeneTree:ENSGT00700000104279
EMBL:FP015869 GeneID:100520816 RefSeq:XP_003134962.1
Ensembl:ENSSSCT00000035048 Uniprot:K7GS77
Length = 292
Score = 115 (45.5 bits), Expect = 0.00057, P = 0.00057
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 2 DLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
D+ E + ++ K + + T Q+ LE F + +PD R +LS+ LGL +++
Sbjct: 103 DVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 162
Query: 62 FWFQNKRTQTKAQNERANNSVL 83
WFQN+R + + Q + + V+
Sbjct: 163 VWFQNRRAKCRKQENQMHKGVI 184
>UNIPROTKB|O97581 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0045893 GO:GO:0046872
GO:GO:0003677 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006263 EMBL:AF063245 UniGene:Ssc.26829
ProteinModelPortal:O97581 SMR:O97581 Uniprot:O97581
Length = 383
Score = 117 (46.2 bits), Expect = 0.00057, P = 0.00057
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 10 TNSQNKGKITCHRH----TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
T Q + + T R T Q++TL++ + P P + R QLS E GLD++ ++ WFQ
Sbjct: 132 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQ 191
Query: 66 NKRTQTK 72
N+R + K
Sbjct: 192 NRRAKEK 198
>ZFIN|ZDB-GENE-980526-167 [details] [associations]
symbol:eng2a "engrailed 2a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0000976 "transcription regulatory
region sequence-specific DNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0030901 "midbrain development" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0001708 "cell fate specification" evidence=IGI]
InterPro:IPR000047 InterPro:IPR000747 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00026
PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
ZFIN:ZDB-GENE-980526-167 GO:GO:0005634 GO:GO:0001708 GO:GO:0009952
GO:GO:0003700 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 GO:GO:0030901 GO:GO:0000976
GeneTree:ENSGT00680000099870 eggNOG:NOG306728 PROSITE:PS00033
HOVERGEN:HBG005975 InterPro:IPR019549 InterPro:IPR019737
Pfam:PF10525 HOGENOM:HOG000247054 OrthoDB:EOG4H72D0 EMBL:X68151
EMBL:X68446 EMBL:X07622 EMBL:X59126 IPI:IPI00509115 PIR:A56557
PIR:S00562 RefSeq:NP_571119.2 UniGene:Dr.162132 UniGene:Dr.162307
UniGene:Dr.75073 ProteinModelPortal:P09015 SMR:P09015 STRING:P09015
Ensembl:ENSDART00000031700 GeneID:30243 KEGG:dre:30243 CTD:30243
InParanoid:P09015 OMA:ERHEECE NextBio:20806696 ArrayExpress:P09015
Bgee:P09015 Uniprot:P09015
Length = 265
Score = 114 (45.2 bits), Expect = 0.00059, P = 0.00059
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 6 EQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
++ A + ++K T T Q+Q L+A F+ + E +R+ L++ELGL+ QIK WFQ
Sbjct: 168 KKKAASKEDKRPRTAF--TAEQLQRLKAEFQTNRYLTEQRRQSLAQELGLNESQIKIWFQ 225
Query: 66 NKRTQTK 72
NKR + K
Sbjct: 226 NKRAKIK 232
>WB|WBGene00000428 [details] [associations]
symbol:ceh-1 species:6239 "Caenorhabditis elegans"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
GO:GO:0007275 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GeneTree:ENSGT00660000095141 EMBL:FO080880 EMBL:X52810 PIR:S13128
PIR:T16081 PIR:T37298 RefSeq:NP_508796.1 ProteinModelPortal:P53547
SMR:P53547 EnsemblMetazoa:F16H11.4.1 EnsemblMetazoa:F16H11.4.2
GeneID:191614 KEGG:cel:CELE_F16H11.4 UCSC:F16H11.4 CTD:191614
WormBase:F16H11.4 eggNOG:NOG286158 HOGENOM:HOG000020299
InParanoid:P53547 OMA:DANTPQT NextBio:949682 Uniprot:P53547
Length = 132
Score = 86 (35.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75
T Q+ LE FK + +R L+ +L L Q+K WFQN+RT+ K N
Sbjct: 9 TYEQLVALENKFKTSRYLSVVERLNLAIQLQLSETQVKIWFQNRRTKWKKHN 60
Score = 51 (23.0 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 157 SSLMPSLPGSAILEHQNVLPPPIL-PVHQEMDIGLDLNLQFKGINDL 202
+ + P LP + I ++L PPI+ P + + G + L +N +
Sbjct: 77 TQIQPILPANPITSFSSLLLPPIISPANSAVLQGTSIPLTLFNLNQI 123
>FB|FBgn0004607 [details] [associations]
symbol:zfh2 "Zn finger homeodomain 2" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=ISS;NAS;IDA] [GO:0003677 "DNA binding" evidence=NAS;TAS]
[GO:0007399 "nervous system development" evidence=IEP] [GO:0000977
"RNA polymerase II regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0007417 "central nervous system
development" evidence=NAS] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00096
InterPro:IPR001356 InterPro:IPR007087 InterPro:IPR009057
InterPro:IPR013087 InterPro:IPR015880 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00028 PROSITE:PS50071
PROSITE:PS50157 SMART:SM00355 SMART:SM00389 GO:GO:0005634
GO:GO:0007399 GO:GO:0046872 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:3.30.160.60 GO:GO:0007476
EMBL:AE014135 GO:GO:0000977 EMBL:M63450 EMBL:AY312816 EMBL:AY312817
EMBL:AY312818 EMBL:AY312819 EMBL:AY312820 EMBL:AY312821
EMBL:AY312822 EMBL:AY312823 EMBL:AY312824 EMBL:AY312825
EMBL:AY312826 EMBL:AY312827 EMBL:AY312828 EMBL:AY312829
EMBL:AY312830 EMBL:AY312831 EMBL:AY312832 EMBL:AY312833
EMBL:AY312834 EMBL:AY312835 EMBL:AY312836 EMBL:AY312837
EMBL:AY312838 EMBL:AY312839 EMBL:AY060681 PIR:S33642
RefSeq:NP_524623.2 ProteinModelPortal:P28167 SMR:P28167
IntAct:P28167 MINT:MINT-904703 STRING:P28167 PaxDb:P28167
EnsemblMetazoa:FBtr0089070 GeneID:43795 KEGG:dme:Dmel_CG1449
CTD:43795 FlyBase:FBgn0004607 eggNOG:NOG301069
GeneTree:ENSGT00530000063717 InParanoid:P28167 KO:K09380
OrthoDB:EOG447D82 PhylomeDB:P28167 GenomeRNAi:43795 NextBio:835886
Bgee:P28167 GermOnline:CG1449 Uniprot:P28167
Length = 3005
Score = 127 (49.8 bits), Expect = 0.00060, P = 0.00060
Identities = 51/175 (29%), Positives = 78/175 (44%)
Query: 5 DEQDATNSQNKGKITCH-RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFW 63
+ +++S + GK R T +QI+ L+ FF++ +P ++ LSK L L + I W
Sbjct: 2142 NSSSSSSSTSGGKRANRTRFTDYQIKVLQEFFENNSYPKDSDLEYLSKLLLLSPRVIVVW 2201
Query: 64 FQNKRT-QTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRS 122
FQN R Q K + NN++ ENE +N+ N C C + +R
Sbjct: 2202 FQNARQKQRKIYENQPNNTLF--ENEETKKQNI-------NYACKKCNL----VFQRYYE 2248
Query: 123 LQKLQLENSQLKEEHEKVSNLLAKYIGKPICQMNSSLMPSLPGSAILEHQNVLPP 177
L + Q +N KEE+ K S A+ I Q SS S + H + PP
Sbjct: 2249 LIRHQ-KNHCFKEENNKKS-AKAQIAAAQIAQNLSS--EDSNSSMDIHHVGICPP 2299
>UNIPROTKB|F1SG33 [details] [associations]
symbol:LOC100520816 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803
GO:GO:0000976 GeneTree:ENSGT00700000104279 KO:K09331 OMA:SNHCPVH
EMBL:FP015869 RefSeq:XP_003134961.1 Ensembl:ENSSSCT00000013224
GeneID:100520816 KEGG:ssc:100520816 Uniprot:F1SG33
Length = 300
Score = 115 (45.5 bits), Expect = 0.00061, P = 0.00061
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 2 DLGDEQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
D+ E + ++ K + + T Q+ LE F + +PD R +LS+ LGL +++
Sbjct: 103 DVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 162
Query: 62 FWFQNKRTQTKAQNERANNSVL 83
WFQN+R + + Q + + V+
Sbjct: 163 VWFQNRRAKCRKQENQMHKGVI 184
>UNIPROTKB|Q9UBR4 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=TAS]
[GO:0009887 "organ morphogenesis" evidence=TAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045893 GO:GO:0043066 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 EMBL:CH471090 GO:GO:0045944
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0005667 GO:GO:0009887 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0021983 GO:GO:0048839 GO:GO:0021527 EMBL:AL138781
GO:GO:0000988 GO:GO:0021521 Orphanet:226307 eggNOG:NOG275246
HOGENOM:HOG000231629 KO:K09374 GO:GO:0021520 HOVERGEN:HBG006263
CTD:8022 OMA:PLCAGCN EMBL:AF156888 EMBL:AF156889 EMBL:AH008761
EMBL:AF096169 EMBL:AF214637 EMBL:AF367089 EMBL:AF367085
EMBL:AF367086 EMBL:AF367087 EMBL:AF367088 IPI:IPI00002747
IPI:IPI00220680 RefSeq:NP_055379.1 RefSeq:NP_835258.1
UniGene:Hs.148427 ProteinModelPortal:Q9UBR4 SMR:Q9UBR4
STRING:Q9UBR4 PhosphoSite:Q9UBR4 DMDM:12643415 PRIDE:Q9UBR4
DNASU:8022 Ensembl:ENST00000371746 Ensembl:ENST00000371748
GeneID:8022 KEGG:hsa:8022 UCSC:uc004cha.3 GeneCards:GC09M139088
HGNC:HGNC:6595 MIM:221750 MIM:600577 neXtProt:NX_Q9UBR4
Orphanet:231720 PharmGKB:PA30366 OrthoDB:EOG4SBDZ0 ChiTaRS:LHX3
GenomeRNAi:8022 NextBio:30588 ArrayExpress:Q9UBR4 Bgee:Q9UBR4
CleanEx:HS_LHX3 Genevestigator:Q9UBR4 GermOnline:ENSG00000107187
GO:GO:0021526 Uniprot:Q9UBR4
Length = 397
Score = 117 (46.2 bits), Expect = 0.00061, P = 0.00061
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 10 TNSQNKGKITCHRH----TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
T Q + + T R T Q++TL++ + P P + R QLS E GLD++ ++ WFQ
Sbjct: 147 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQ 206
Query: 66 NKRTQTK 72
N+R + K
Sbjct: 207 NRRAKEK 213
>MGI|MGI:102673 [details] [associations]
symbol:Lhx3 "LIM homeobox protein 3" species:10090 "Mus
musculus" [GO:0001076 "RNA polymerase II transcription factor
binding transcription factor activity" evidence=IPI] [GO:0001890
"placenta development" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008045 "motor
neuron axon guidance" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IMP] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IGI] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IDA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IGI] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IDA] [GO:0021983
"pituitary gland development" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IMP] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:102673 GO:GO:0043066 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0001890 GO:GO:0021983
GO:GO:0048839 GO:GO:0021527 GO:GO:0000988 GO:GO:0021521
eggNOG:NOG275246 GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629
KO:K09374 GO:GO:0021520 PDB:2RGT PDBsum:2RGT PDB:2JTN PDBsum:2JTN
HOVERGEN:HBG006263 CTD:8022 OMA:PLCAGCN OrthoDB:EOG4SBDZ0
GO:GO:0021526 EMBL:L33776 EMBL:L38857 EMBL:L38249 EMBL:L38248
IPI:IPI00118214 IPI:IPI00263557 PIR:I59360 RefSeq:NP_001034742.1
UniGene:Mm.386765 ProteinModelPortal:P50481 SMR:P50481
MINT:MINT-7009840 STRING:P50481 PhosphoSite:P50481 PRIDE:P50481
Ensembl:ENSMUST00000028302 Ensembl:ENSMUST00000054099 GeneID:16871
KEGG:mmu:16871 EvolutionaryTrace:P50481 NextBio:290838 Bgee:P50481
CleanEx:MM_LHX3 Genevestigator:P50481 GermOnline:ENSMUSG00000026934
Uniprot:P50481
Length = 400
Score = 117 (46.2 bits), Expect = 0.00062, P = 0.00062
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 10 TNSQNKGKITCHRH----TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
T Q + + T R T Q++TL++ + P P + R QLS E GLD++ ++ WFQ
Sbjct: 150 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQ 209
Query: 66 NKRTQTK 72
N+R + K
Sbjct: 210 NRRAKEK 216
>UNIPROTKB|G3V8E3 [details] [associations]
symbol:Lhx3 "Protein Lhx3" species:10116 "Rattus
norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71078 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 EMBL:CH474001 GeneTree:ENSGT00700000104177
KO:K09374 CTD:8022 RefSeq:XP_002726117.1 RefSeq:XP_002729190.1
UniGene:Rn.198623 PRIDE:G3V8E3 Ensembl:ENSRNOT00000025047
GeneID:170671 KEGG:rno:170671 NextBio:621169 Uniprot:G3V8E3
Length = 400
Score = 117 (46.2 bits), Expect = 0.00062, P = 0.00062
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 10 TNSQNKGKITCHRH----TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
T Q + + T R T Q++TL++ + P P + R QLS E GLD++ ++ WFQ
Sbjct: 150 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQ 209
Query: 66 NKRTQTK 72
N+R + K
Sbjct: 210 NRRAKEK 216
>UNIPROTKB|G3V9E7 [details] [associations]
symbol:Lhx3 "RCG45383, isoform CRA_b" species:10116 "Rattus
norvegicus" [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0008045 "motor
neuron axon guidance" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0048839 "inner ear development" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71078 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 EMBL:CH474001 GeneTree:ENSGT00700000104177
KO:K09374 CTD:8022 OMA:PLCAGCN UniGene:Rn.198623 GeneID:170671
KEGG:rno:170671 NextBio:621169 RefSeq:XP_001059910.2
RefSeq:XP_001078243.2 Ensembl:ENSRNOT00000045587 Uniprot:G3V9E7
Length = 402
Score = 117 (46.2 bits), Expect = 0.00062, P = 0.00062
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 10 TNSQNKGKITCHRH----TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
T Q + + T R T Q++TL++ + P P + R QLS E GLD++ ++ WFQ
Sbjct: 152 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQ 211
Query: 66 NKRTQTK 72
N+R + K
Sbjct: 212 NRRAKEK 218
>UNIPROTKB|Q2TEA4 [details] [associations]
symbol:Lhx3 "LIM homeodomain 3 protein b isoform"
species:9913 "Bos taurus" [GO:0048839 "inner ear development"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IEA] [GO:0021521 "ventral spinal cord interneuron
specification" evidence=IEA] [GO:0021520 "spinal cord motor neuron
cell fate specification" evidence=IEA] [GO:0008045 "motor neuron
axon guidance" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0043066
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0045944
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0021983 GO:GO:0048839
GO:GO:0021527 GO:GO:0000988 GO:GO:0021521
GeneTree:ENSGT00700000104177 KO:K09374 GO:GO:0021520
HOVERGEN:HBG006263 CTD:8022 OMA:PLCAGCN GO:GO:0021526
EMBL:DAAA02032311 EMBL:AY923832 EMBL:AY923833 IPI:IPI00687531
IPI:IPI01028343 RefSeq:NP_001033709.1 UniGene:Bt.45155
Ensembl:ENSBTAT00000055580 GeneID:539213 KEGG:bta:539213
NextBio:20877851 Uniprot:Q2TEA4
Length = 403
Score = 117 (46.2 bits), Expect = 0.00062, P = 0.00062
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 10 TNSQNKGKITCHRH----TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
T Q + + T R T Q++TL++ + P P + R QLS E GLD++ ++ WFQ
Sbjct: 152 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQ 211
Query: 66 NKRTQTK 72
N+R + K
Sbjct: 212 NRRAKEK 218
>WB|WBGene00003000 [details] [associations]
symbol:lin-11 species:6239 "Caenorhabditis elegans"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0001708 "cell
fate specification" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0045595 "regulation of cell differentiation"
evidence=IMP] [GO:0030334 "regulation of cell migration"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0001708 GO:GO:0018991
GO:GO:0040010 GO:GO:0045595 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0030334 Gene3D:2.10.110.10 GO:GO:0007413 GO:GO:0040026
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
KO:K09372 EMBL:Z80221 EMBL:X54355 PIR:T27509 RefSeq:NP_492696.1
ProteinModelPortal:P20154 SMR:P20154 STRING:P20154
EnsemblMetazoa:ZC247.3 GeneID:172893 KEGG:cel:CELE_ZC247.3
UCSC:ZC247.3 CTD:172893 WormBase:ZC247.3 InParanoid:P20154
OMA:NDQQFYP NextBio:877423 Uniprot:P20154
Length = 405
Score = 117 (46.2 bits), Expect = 0.00063, P = 0.00063
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 1 GDLG-DEQDATNS-QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLK 58
GD G D D +NS + +G T + Q++TL+ F P P + R QL+ E GL+++
Sbjct: 226 GDCGKDNSDDSNSAKRRGPRTTIK--AKQLETLKNAFAATPKPTRHIREQLAAETGLNMR 283
Query: 59 QIKFWFQNKRTQTKAQNE 76
I+ WFQN+R++ + +
Sbjct: 284 VIQVWFQNRRSKERRMKQ 301
>FB|FBgn0026411 [details] [associations]
symbol:Lim1 species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0007480 "imaginal disc-derived leg morphogenesis"
evidence=IMP] [GO:0007479 "leg disc proximal/distal pattern
formation" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IGI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005525
GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0046872
EMBL:AE014298 GO:GO:0043565 GO:GO:0008270 GO:GO:0003924
GO:GO:0006184 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0007480 GO:GO:0007479 FlyBase:FBgn0260444
HSSP:P06601 GeneTree:ENSGT00700000104177 eggNOG:NOG257130 KO:K09372
EMBL:AF181631 EMBL:AB034690 RefSeq:NP_572505.1 UniGene:Dm.3025
SMR:Q9V472 IntAct:Q9V472 MINT:MINT-756444 STRING:Q9V472
EnsemblMetazoa:FBtr0071279 GeneID:31813 KEGG:dme:Dmel_CG11354
UCSC:CG11354-RA CTD:31813 FlyBase:FBgn0026411 InParanoid:Q9V472
OMA:GARKMRG OrthoDB:EOG48W9H7 GenomeRNAi:31813 NextBio:775444
Uniprot:Q9V472
Length = 505
Score = 118 (46.6 bits), Expect = 0.00069, P = 0.00069
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 8 DATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNK 67
DA S+ +G T + Q++ L+ F P P + R QL+KE GL ++ I+ WFQNK
Sbjct: 241 DANGSKRRGPRTTIK--AKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNK 298
Query: 68 RTQTKAQNE 76
R++ + +
Sbjct: 299 RSKERRMKQ 307
>WB|WBGene00000430 [details] [associations]
symbol:ceh-5 species:6239 "Caenorhabditis elegans"
[GO:0000976 "transcription regulatory region sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 EMBL:Z81036 PIR:S05706 PIR:T19335 RefSeq:NP_492586.2
ProteinModelPortal:P20269 SMR:P20269 EnsemblMetazoa:C16C2.1
GeneID:191616 KEGG:cel:CELE_C16C2.1 UCSC:C16C2.1 CTD:191616
WormBase:C16C2.1 eggNOG:NOG309408 GeneTree:ENSGT00680000099870
HOGENOM:HOG000017392 InParanoid:P20269 OMA:QNYWTAA NextBio:949690
Uniprot:P20269
Length = 134
Score = 97 (39.2 bits), Expect = 0.00074, P = 0.00074
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNER 77
T Q++ LE F + + R +L++ LGL Q+K WFQN+RT+ K + R
Sbjct: 43 TDEQLEKLEESFNTSGYLSGSTRAKLAESLGLSDNQVKVWFQNRRTKQKKIDSR 96
>UNIPROTKB|F1NL45 [details] [associations]
symbol:MIXL1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GeneTree:ENSGT00700000104128 EMBL:AADN02012178
EMBL:AADN02012179 IPI:IPI00590510 Ensembl:ENSGALT00000038807
ArrayExpress:F1NL45 Uniprot:F1NL45
Length = 116
Score = 94 (38.1 bits), Expect = 0.00077, P = 0.00077
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74
T Q++TLE F+D +PD R +L+ + +I+ WFQN+R +++ Q
Sbjct: 11 TAAQLETLELVFQDTMYPDIYLRERLADATQIPESRIQVWFQNRRAKSRRQ 61
>UNIPROTKB|F1NL46 [details] [associations]
symbol:MIXL1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GeneTree:ENSGT00700000104128 IPI:IPI00572899
EMBL:AADN02012178 EMBL:AADN02012179 Ensembl:ENSGALT00000038806
OMA:AFPAGRW ArrayExpress:F1NL46 Uniprot:F1NL46
Length = 122
Score = 94 (38.1 bits), Expect = 0.00077, P = 0.00077
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 24 TTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74
T Q++TLE F+D +PD R +L+ + +I+ WFQN+R +++ Q
Sbjct: 66 TAAQLETLELVFQDTMYPDIYLRERLADATQIPESRIQVWFQNRRAKSRRQ 116
>UNIPROTKB|P53412 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0043066 GO:GO:0030154 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0000988 eggNOG:NOG275246
GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629 KO:K09374
HOVERGEN:HBG006263 EMBL:L35570 IPI:IPI00651346 PIR:I50376
RefSeq:NP_001025506.1 UniGene:Gga.91 ProteinModelPortal:P53412
SMR:P53412 STRING:P53412 Ensembl:ENSGALT00000002663 GeneID:373940
KEGG:gga:373940 CTD:8022 InParanoid:P53412 OMA:PLCAGCN
NextBio:20813472 ArrayExpress:P53412 Uniprot:P53412
Length = 395
Score = 116 (45.9 bits), Expect = 0.00078, P = 0.00078
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 6 EQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
+++A ++ + + T T Q++TL+ + + P P + R QLS E GLD++ ++ WFQ
Sbjct: 147 QREAESTAKRPRTTI---TAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQVWFQ 203
Query: 66 NKRTQTK 72
N+R + K
Sbjct: 204 NRRAKEK 210
>UNIPROTKB|P36200 [details] [associations]
symbol:lhx3 "LIM/homeobox protein Lhx3" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 KO:K09374 HOVERGEN:HBG006263
CTD:8022 EMBL:Z22702 EMBL:Z11589 PIR:S38821 RefSeq:NP_001081623.1
UniGene:Xl.32 ProteinModelPortal:P36200 SMR:P36200 GeneID:397959
KEGG:xla:397959 Xenbase:XB-GENE-865930 Uniprot:P36200
Length = 395
Score = 116 (45.9 bits), Expect = 0.00078, P = 0.00078
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 6 EQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
+++A ++ + + T T Q++TL+ + + P P + R QLS E GLD++ ++ WFQ
Sbjct: 147 QREAESTAKRPRTTI---TAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQVWFQ 203
Query: 66 NKRTQTK 72
N+R + K
Sbjct: 204 NRRAKEK 210
>MGI|MGI:1918847 [details] [associations]
symbol:Isx "intestine specific homeobox" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:1901738 "regulation of vitamin A metabolic process"
evidence=IMP] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 MGI:MGI:1918847 GO:GO:0005634 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GeneTree:ENSGT00700000104256 CTD:91464 eggNOG:NOG252360
HOGENOM:HOG000052524 HOVERGEN:HBG096596 OrthoDB:EOG4PZJ7F
EMBL:AK018615 EMBL:BC128289 EMBL:BC128290 IPI:IPI00316540
IPI:IPI00850211 RefSeq:NP_082113.2 UniGene:Mm.158735
ProteinModelPortal:A1A546 SMR:A1A546 STRING:A1A546
PhosphoSite:A1A546 PRIDE:A1A546 Ensembl:ENSMUST00000034034
Ensembl:ENSMUST00000174427 GeneID:71597 KEGG:mmu:71597
UCSC:uc012ggb.1 InParanoid:A1A546 OMA:CEAPENL NextBio:334069
Bgee:A1A546 CleanEx:MM_ISX Genevestigator:A1A546 Uniprot:A1A546
Length = 240
Score = 112 (44.5 bits), Expect = 0.00078, P = 0.00078
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 6 EQDATNSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
+Q +NK ++ TT Q+Q LE F +PD + R QL+ + L +++ WFQ
Sbjct: 69 DQPQEEKKNKRRVRT-TFTTEQLQELEKLFHFTHYPDIHVRSQLASRINLPEARVQIWFQ 127
Query: 66 NKRTQTKAQNERANNSVLRAENE 88
N+R + + Q + N S + E
Sbjct: 128 NQRAKWRKQEKSGNLSAPQQPGE 150
>TAIR|locus:2046263 [details] [associations]
symbol:HB21 "homeobox protein 21" species:3702
"Arabidopsis thaliana" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006950 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0000976 KO:K09338 HSSP:P01366 EMBL:AC006135
EMBL:BT031362 IPI:IPI00520845 PIR:F84565 RefSeq:NP_179445.1
UniGene:At.52810 ProteinModelPortal:Q9ZU70 SMR:Q9ZU70
EnsemblPlants:AT2G18550.1 GeneID:816370 KEGG:ath:AT2G18550
GeneFarm:3961 TAIR:At2g18550 eggNOG:NOG270330 HOGENOM:HOG000034122
InParanoid:Q9ZU70 OMA:RVEDEYT PhylomeDB:Q9ZU70
ProtClustDB:CLSN2683051 ArrayExpress:Q9ZU70 Genevestigator:Q9ZU70
GermOnline:AT2G18550 Uniprot:Q9ZU70
Length = 220
Score = 111 (44.1 bits), Expect = 0.00078, P = 0.00078
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 9 ATNSQNKGK--ITCHRHTTHQIQTLEAFFKDCPHPDENQRR-QLSKELGLDLKQIKFWFQ 65
A +N+G + + Q++ LE F+D H E++R+ +L+ ELGLD +Q+ WFQ
Sbjct: 49 AEEGENEGNGWFRKRKLSDEQVRMLEISFED-DHKLESERKDRLASELGLDPRQVAVWFQ 107
Query: 66 NKRTQTKAQNERANNSVLRAEN 87
N+R + K N+R + + +N
Sbjct: 108 NRRARWK--NKRVEDEYTKLKN 127
>UNIPROTKB|F1MMA8 [details] [associations]
symbol:LOC506388 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GeneTree:ENSGT00700000104256
OMA:CCEAPKK EMBL:DAAA02013790 IPI:IPI00686698
Ensembl:ENSBTAT00000010095 Uniprot:F1MMA8
Length = 246
Score = 112 (44.5 bits), Expect = 0.00083, P = 0.00083
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 2 DLGDE---QDATNSQNKGKITCHR-HTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDL 57
D G E QD KGK TT Q+Q LE F +PD + R QL+ + L
Sbjct: 54 DFGPERPQQDQPKEGKKGKRRLRTTFTTEQLQELEKVFHFTHYPDIHVRNQLAARINLPE 113
Query: 58 KQIKFWFQNKRTQTKAQNERANN 80
+++ WFQN+R + + Q E+ N+
Sbjct: 114 ARVQIWFQNQRAKWRKQ-EKTNS 135
>UNIPROTKB|G1K361 [details] [associations]
symbol:PRRX1 "Paired mesoderm homeobox protein 1"
species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0002053 "positive
regulation of mesenchymal cell proliferation" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0030326 "embryonic limb
morphogenesis" evidence=IEA] [GO:0042472 "inner ear morphogenesis"
evidence=IEA] [GO:0042474 "middle ear morphogenesis" evidence=IEA]
[GO:0045880 "positive regulation of smoothened signaling pathway"
evidence=IEA] [GO:0048701 "embryonic cranial skeleton
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
[GO:0060021 "palate development" evidence=IEA] [GO:0071837 "HMG box
domain binding" evidence=IEA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AADN02033985
EMBL:AADN02033987 EMBL:AADN02033986 ProteinModelPortal:G1K361
Ensembl:ENSGALT00000033836 Uniprot:G1K361
Length = 214
Score = 107 (42.7 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 6 EQDATNSQNKGKITCHRHTT----HQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
+ D NS+ K K R+ T Q+Q LE F+ +PD R L++ + L +++
Sbjct: 80 DNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQ 139
Query: 62 FWFQNKRTQTKAQNERA 78
WFQN+R + + +NERA
Sbjct: 140 VWFQNRRAKFR-RNERA 155
Score = 40 (19.1 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 152 ICQMNSSLMPSLPGSAILEHQNVLPPP 178
+ N+SL+ S G Q ++P P
Sbjct: 157 LASKNASLLKSYSGDVTAVEQPIVPRP 183
>WB|WBGene00000584 [details] [associations]
symbol:cog-1 species:6239 "Caenorhabditis elegans"
[GO:0000976 "transcription regulatory region sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0008406
"gonad development" evidence=IMP] [GO:0007389 "pattern
specification process" evidence=IMP] [GO:0007368 "determination of
left/right symmetry" evidence=IMP] [GO:0070491 "repressing
transcription factor binding" evidence=IPI] InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0018991
GO:GO:0008406 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.60
InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689 GO:GO:0007368
GeneTree:ENSGT00680000099625 HSSP:P13297 EMBL:Z82279 EMBL:AY151209
PIR:T23866 RefSeq:NP_001022264.1 UniGene:Cel.20704
ProteinModelPortal:G5EGE2 SMR:G5EGE2 IntAct:G5EGE2
EnsemblMetazoa:R03C1.3a GeneID:175149 KEGG:cel:CELE_R03C1.3
CTD:175149 WormBase:R03C1.3a OMA:ASGDKSP NextBio:886968
Uniprot:G5EGE2
Length = 256
Score = 112 (44.5 bits), Expect = 0.00092, P = 0.00092
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 7 QDATNSQNKGKITCH-RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65
Q + NS N K T HQI LE F+ + R QL++EL + Q+K WFQ
Sbjct: 159 QLSPNSLNMQKKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMSESQVKVWFQ 218
Query: 66 NKRTQTKAQNERANNSVLR--AENERVHC 92
N+RT+ + + E A+N++++ A ++ C
Sbjct: 219 NRRTKWR-KKEAADNALVKRGASGDKSPC 246
>UNIPROTKB|F1MXQ1 [details] [associations]
symbol:F1MXQ1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0048666 "neuron
development" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030901
"midbrain development" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0000976 "transcription regulatory region sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000047 InterPro:IPR000747
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00026 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0045944
GO:GO:0003700 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 GO:GO:0048666 GO:GO:0030901 GO:GO:0030902
GO:GO:0000976 GeneTree:ENSGT00680000099870 EMBL:DAAA02012122
EMBL:DAAA02012123 IPI:IPI00718569 Ensembl:ENSBTAT00000028648
OMA:PSTHMEA Uniprot:F1MXQ1
Length = 186
Score = 108 (43.1 bits), Expect = 0.00093, P = 0.00093
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 11 NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQ 70
N ++K T T Q+Q L+A F+ + E +R+ L++EL L+ QIK WFQNKR +
Sbjct: 94 NKEDKRPRTAF--TAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAK 151
Query: 71 TK 72
K
Sbjct: 152 IK 153
>UNIPROTKB|J9P9S0 [details] [associations]
symbol:PRRX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GeneTree:ENSGT00700000104279
CTD:5396 KO:K09329 EMBL:AAEX03005214 EMBL:AAEX03005215
GeneID:609105 KEGG:cfa:609105 RefSeq:XP_862211.1
ProteinModelPortal:J9P9S0 Ensembl:ENSCAFT00000049641 Uniprot:J9P9S0
Length = 217
Score = 107 (42.7 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 6 EQDATNSQNKGKITCHRHTT----HQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
+ D NS+ K K R+ T Q+Q LE F+ +PD R L++ + L +++
Sbjct: 80 DNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQ 139
Query: 62 FWFQNKRTQTKAQNERA 78
WFQN+R + + +NERA
Sbjct: 140 VWFQNRRAKFR-RNERA 155
Score = 40 (19.1 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 152 ICQMNSSLMPSLPGSAILEHQNVLPPP 178
+ N+SL+ S G Q ++P P
Sbjct: 157 LANKNASLLKSYSGDVTAVEQPIVPRP 183
>UNIPROTKB|Q643W9 [details] [associations]
symbol:Prrx1 "Paired mesoderm homeobox protein 1"
species:10116 "Rattus norvegicus" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
RGD:628884 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 HOGENOM:HOG000231518
EMBL:CH473958 HOVERGEN:HBG021349 UniGene:Rn.203584 EMBL:AY730764
IPI:IPI00471690 SMR:Q643W9 STRING:Q643W9 Ensembl:ENSRNOT00000042557
Genevestigator:Q643W9 Uniprot:Q643W9
Length = 217
Score = 107 (42.7 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 6 EQDATNSQNKGKITCHRHTT----HQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIK 61
+ D NS+ K K R+ T Q+Q LE F+ +PD R L++ + L +++
Sbjct: 80 DNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQ 139
Query: 62 FWFQNKRTQTKAQNERA 78
WFQN+R + + +NERA
Sbjct: 140 VWFQNRRAKFR-RNERA 155
Score = 40 (19.1 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 152 ICQMNSSLMPSLPGSAILEHQNVLPPP 178
+ N+SL+ S G Q ++P P
Sbjct: 157 LANKNASLLKSYSGDVTAVEQPIVPRP 183
>UNIPROTKB|H9L1U3 [details] [associations]
symbol:H9L1U3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GeneTree:ENSGT00610000086217 EMBL:AADN02076603
Ensembl:ENSGALT00000035653 OMA:FREQRYI Uniprot:H9L1U3
Length = 119
Score = 93 (37.8 bits), Expect = 0.00099, P = 0.00099
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 27 QIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERA 78
Q+Q LE F++ + +++R+L+ L L QIK WFQN+R + K + + A
Sbjct: 67 QLQELERSFREQRYIGASEKRRLAAALDLSQSQIKTWFQNRRMKFKRETQDA 118
>UNIPROTKB|G3V567 [details] [associations]
symbol:PAX6 "Paired box protein Pax-6" species:9606 "Homo
sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0000979
"RNA polymerase II core promoter sequence-specific DNA binding"
evidence=IEA] [GO:0000981 "sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0001709 "cell fate determination" evidence=IEA] [GO:0001764
"neuron migration" evidence=IEA] [GO:0002052 "positive regulation
of neuroblast proliferation" evidence=IEA] [GO:0002088 "lens
development in camera-type eye" evidence=IEA] [GO:0003322
"pancreatic A cell development" evidence=IEA] [GO:0003680 "AT DNA
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0007224 "smoothened signaling pathway"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA] [GO:0007435
"salivary gland morphogenesis" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0009950
"dorsal/ventral axis specification" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0021778 "oligodendrocyte
cell fate specification" evidence=IEA] [GO:0021796 "cerebral cortex
regionalization" evidence=IEA] [GO:0021797 "forebrain
anterior/posterior pattern specification" evidence=IEA] [GO:0021798
"forebrain dorsal/ventral pattern formation" evidence=IEA]
[GO:0021902 "commitment of neuronal cell to specific neuron type in
forebrain" evidence=IEA] [GO:0021905 "forebrain-midbrain boundary
formation" evidence=IEA] [GO:0021912 "regulation of transcription
from RNA polymerase II promoter involved in spinal cord motor
neuron fate specification" evidence=IEA] [GO:0021913 "regulation of
transcription from RNA polymerase II promoter involved in ventral
spinal cord interneuron specification" evidence=IEA] [GO:0021918
"regulation of transcription from RNA polymerase II promoter
involved in somatic motor neuron fate commitment" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0023019
"signal transduction involved in regulation of gene expression"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030334 "regulation of cell migration"
evidence=IEA] [GO:0030858 "positive regulation of epithelial cell
differentiation" evidence=IEA] [GO:0030902 "hindbrain development"
evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0032808 "lacrimal gland development"
evidence=IEA] [GO:0033365 "protein localization to organelle"
evidence=IEA] [GO:0035035 "histone acetyltransferase binding"
evidence=IEA] [GO:0042462 "eye photoreceptor cell development"
evidence=IEA] [GO:0042660 "positive regulation of cell fate
specification" evidence=IEA] [GO:0045665 "negative regulation of
neuron differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0048505 "regulation of timing of cell
differentiation" evidence=IEA] [GO:0048596 "embryonic camera-type
eye morphogenesis" evidence=IEA] [GO:0048708 "astrocyte
differentiation" evidence=IEA] [GO:0050680 "negative regulation of
epithelial cell proliferation" evidence=IEA] [GO:0070410 "co-SMAD
binding" evidence=IEA] [GO:0070412 "R-SMAD binding" evidence=IEA]
[GO:0071837 "HMG box domain binding" evidence=IEA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
GO:GO:0007411 GO:GO:0001764 GO:GO:0030216 GO:GO:0007435
GO:GO:0045944 GO:GO:0045665 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0030334 GO:GO:0000790 GO:GO:0006366 GO:GO:0000981
GO:GO:0033365 GO:GO:0021983 GO:GO:0050680 GO:GO:0000979
GO:GO:0030858 GO:GO:0007224 GO:GO:0001709 GO:GO:0002052
GO:GO:0009950 GO:GO:0021797 GO:GO:0048596 GO:GO:0023019
GO:GO:0002088 GO:GO:0042462 EMBL:Z83307 GO:GO:0021796 GO:GO:0021913
GO:GO:0032808 GO:GO:0021798 GO:GO:0048505 GO:GO:0021905
GO:GO:0048708 GO:GO:0021912 GO:GO:0021902 GO:GO:0021778
GO:GO:0003322 GO:GO:0021918 EMBL:Z95332 HGNC:HGNC:8620
ProteinModelPortal:G3V567 SMR:G3V567 Ensembl:ENST00000530373
ArrayExpress:G3V567 Bgee:G3V567 Uniprot:G3V567
Length = 128
Score = 93 (37.8 bits), Expect = 0.00099, P = 0.00099
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 13 QNKGKITCHR--HTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQ 70
Q K K+ +R T QI+ LE F+ +PD R +L+ ++ L +I+ WF N+R +
Sbjct: 4 QLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 63
Query: 71 TKAQNERANNSVLRAENERVH 91
+ + E+ N +A N H
Sbjct: 64 WRRE-EKLRNQRRQASNTPSH 83
>WB|WBGene00044330 [details] [associations]
symbol:alr-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 eggNOG:NOG313402 KO:K09452
GeneTree:ENSGT00700000104279 HSSP:P06601 EMBL:Z68008 PIR:T24046
RefSeq:NP_509860.1 ProteinModelPortal:Q21836 SMR:Q21836
STRING:Q21836 EnsemblMetazoa:R08B4.2 GeneID:181302
KEGG:cel:CELE_R08B4.2 UCSC:R08B4.2 CTD:181302 WormBase:R08B4.2
HOGENOM:HOG000021099 InParanoid:Q21836 OMA:ERSSTHH NextBio:913362
Uniprot:Q21836
Length = 362
Score = 95 (38.5 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 4 GDEQDATNS-QNKGKITCHRHTT----HQIQTLEAFFKDCPHPDENQRRQLSKELGLDLK 58
G D TNS + GK R+ T Q+ LE F +PD R +L+ + L
Sbjct: 100 GSPSDGTNSPDDNGKRKQRRYRTTFSAFQLDELEKVFARTHYPDVFTREELATRVQLTEA 159
Query: 59 QIKFWFQNKRTQTKAQNERAN 79
+++ WFQN+R + + Q ER++
Sbjct: 160 RVQVWFQNRRAKYRKQ-ERSS 179
Score = 62 (26.9 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 158 SLMPSLPGSAILEHQNVLPPPILPVHQEMDIGLDLNLQFKGINDLEQSLM-METATNAMD 216
S PS+P + +LP + P Q D LN+ F GI + Q L+ ++ + AMD
Sbjct: 234 SQSPSVP---VTTSSPILPTSVTPTFQNADA---LNMLFGGITPVTQQLLYVQQFSRAMD 287
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 448 448 0.00091 118 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 99
No. of states in DFA: 623 (66 KB)
Total size of DFA: 308 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 44.16u 0.14s 44.30t Elapsed: 00:00:02
Total cpu time: 44.17u 0.15s 44.32t Elapsed: 00:00:02
Start: Sat May 11 01:19:04 2013 End: Sat May 11 01:19:06 2013