Query 046202
Match_columns 448
No_of_seqs 324 out of 1553
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:45:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 1.5E-94 3.3E-99 693.7 20.1 226 204-433 1-229 (229)
2 PF01852 START: START domain; 99.7 1.1E-17 2.4E-22 156.6 11.2 201 209-433 1-205 (206)
3 smart00234 START in StAR and p 99.7 7E-17 1.5E-21 151.7 16.5 202 210-434 2-206 (206)
4 KOG0483 Transcription factor H 99.6 2.2E-16 4.8E-21 149.6 6.4 83 19-101 53-135 (198)
5 KOG0488 Transcription factor B 99.6 1.4E-15 2.9E-20 153.6 4.8 67 11-77 167-233 (309)
6 KOG0842 Transcription factor t 99.6 2E-15 4.4E-20 151.0 5.9 67 13-79 150-216 (307)
7 KOG0843 Transcription factor E 99.6 1.9E-15 4E-20 139.6 3.8 65 14-78 100-164 (197)
8 KOG0489 Transcription factor z 99.5 4.8E-15 1E-19 146.6 1.5 65 14-78 157-221 (261)
9 KOG0484 Transcription factor P 99.5 4.5E-15 9.7E-20 126.0 0.9 65 11-75 12-76 (125)
10 KOG0487 Transcription factor A 99.5 2.1E-14 4.5E-19 143.8 4.1 65 14-78 233-297 (308)
11 KOG0485 Transcription factor N 99.5 2.1E-14 4.6E-19 135.9 3.3 63 13-75 101-163 (268)
12 KOG0850 Transcription factor D 99.5 3E-14 6.4E-19 136.1 4.0 64 13-76 119-182 (245)
13 KOG2251 Homeobox transcription 99.4 5.9E-14 1.3E-18 133.5 4.9 68 11-78 32-99 (228)
14 PF00046 Homeobox: Homeobox do 99.4 3.7E-14 7.9E-19 108.0 2.6 57 17-73 1-57 (57)
15 KOG0494 Transcription factor C 99.4 1.4E-13 3.1E-18 133.2 4.3 69 20-88 145-213 (332)
16 KOG0492 Transcription factor M 99.4 2.2E-13 4.8E-18 128.3 5.3 61 16-76 144-204 (246)
17 KOG0848 Transcription factor C 99.4 1.3E-13 2.9E-18 134.0 1.8 63 17-79 200-262 (317)
18 cd00177 START Lipid-binding ST 99.3 2.5E-11 5.4E-16 111.1 13.6 188 213-431 2-191 (193)
19 KOG0493 Transcription factor E 99.3 7.5E-13 1.6E-17 128.4 3.0 61 17-77 247-307 (342)
20 smart00389 HOX Homeodomain. DN 99.3 1.7E-12 3.7E-17 98.0 2.9 55 18-72 2-56 (56)
21 TIGR01565 homeo_ZF_HD homeobox 99.3 5.9E-12 1.3E-16 97.5 5.7 53 16-68 1-57 (58)
22 cd00086 homeodomain Homeodomai 99.3 2.2E-12 4.7E-17 98.0 3.0 57 18-74 2-58 (59)
23 COG5576 Homeodomain-containing 99.3 2.7E-12 5.9E-17 117.9 3.9 69 11-79 46-114 (156)
24 KOG0486 Transcription factor P 99.2 1.5E-11 3.3E-16 122.2 4.0 60 15-74 111-170 (351)
25 KOG3802 Transcription factor O 99.2 2.4E-11 5.3E-16 124.4 5.5 62 13-74 291-352 (398)
26 KOG0491 Transcription factor B 99.2 3.7E-12 7.9E-17 116.4 -1.1 65 15-79 99-163 (194)
27 cd08871 START_STARD10-like Lip 99.1 1.4E-09 3E-14 104.6 15.4 198 213-445 10-213 (222)
28 cd08867 START_STARD4_5_6-like 99.1 2.2E-09 4.8E-14 102.0 15.4 193 207-432 3-205 (206)
29 KOG0844 Transcription factor E 99.1 2.7E-11 5.9E-16 119.8 2.3 59 16-74 181-239 (408)
30 KOG4577 Transcription factor L 99.1 9.2E-11 2E-15 115.3 5.4 67 13-79 164-230 (383)
31 KOG0847 Transcription factor, 99.1 3.4E-11 7.4E-16 114.5 1.6 62 14-75 165-226 (288)
32 cd08868 START_STARD1_3_like Ch 99.0 5.6E-09 1.2E-13 99.4 14.4 194 207-435 6-208 (208)
33 cd08904 START_STARD6-like Lipi 98.9 2.6E-08 5.6E-13 95.5 13.6 171 207-402 3-178 (204)
34 KOG0490 Transcription factor, 98.8 2.2E-09 4.7E-14 102.6 3.8 63 13-75 57-119 (235)
35 cd08903 START_STARD5-like Lipi 98.7 2.1E-07 4.5E-12 89.1 14.5 166 207-402 3-180 (208)
36 KOG0849 Transcription factor P 98.6 2.3E-08 5E-13 103.2 3.6 64 12-75 172-235 (354)
37 cd08909 START_STARD13-like C-t 98.6 6.7E-07 1.5E-11 85.9 13.2 128 262-402 48-178 (205)
38 KOG1168 Transcription factor A 98.6 4.5E-08 9.7E-13 96.8 4.3 62 13-74 306-367 (385)
39 cd08905 START_STARD1-like Chol 98.6 5.5E-07 1.2E-11 86.3 11.5 193 206-433 5-207 (209)
40 cd08869 START_RhoGAP C-termina 98.6 9.6E-07 2.1E-11 83.8 12.8 163 212-402 4-170 (197)
41 PLN00188 enhanced disease resi 98.5 1.2E-06 2.5E-11 96.5 12.2 125 266-402 227-363 (719)
42 KOG0775 Transcription factor S 98.4 1.7E-07 3.8E-12 92.1 3.5 51 23-73 183-233 (304)
43 cd08906 START_STARD3-like Chol 98.3 7.6E-06 1.7E-10 78.6 13.3 195 206-432 5-206 (209)
44 cd08902 START_STARD4-like Lipi 98.2 1.5E-05 3.3E-10 76.3 12.7 178 207-418 3-187 (202)
45 cd08908 START_STARD12-like C-t 98.2 1.6E-05 3.4E-10 76.5 12.7 164 211-402 11-177 (204)
46 cd08876 START_1 Uncharacterize 98.0 8E-05 1.7E-09 69.5 11.9 151 267-432 42-194 (195)
47 cd08910 START_STARD2-like Lipi 98.0 5E-05 1.1E-09 72.8 10.6 149 266-434 49-206 (207)
48 cd08874 START_STARD9-like C-te 98.0 4.6E-05 1E-09 73.3 10.3 122 261-400 45-176 (205)
49 cd08877 START_2 Uncharacterize 97.9 0.00011 2.4E-09 70.3 11.7 196 207-433 3-213 (215)
50 PF05920 Homeobox_KN: Homeobox 97.9 2.2E-06 4.7E-11 61.7 -0.4 34 37-70 7-40 (40)
51 cd08870 START_STARD2_7-like Li 97.9 0.0003 6.6E-09 67.2 14.1 152 266-434 50-208 (209)
52 KOG0774 Transcription factor P 97.9 9.4E-06 2E-10 79.6 3.2 58 17-74 189-249 (334)
53 cd08907 START_STARD8-like C-te 97.7 0.00015 3.3E-09 69.6 9.1 165 211-402 11-178 (205)
54 KOG2252 CCAAT displacement pro 97.6 3.8E-05 8.2E-10 82.2 3.2 62 11-72 415-476 (558)
55 cd08911 START_STARD7-like Lipi 97.6 0.00073 1.6E-08 64.7 11.1 151 267-434 46-206 (207)
56 KOG0490 Transcription factor, 97.4 0.00013 2.9E-09 69.6 3.9 65 12-76 149-213 (235)
57 cd08873 START_STARD14_15-like 97.3 0.0014 3.1E-08 64.4 10.4 122 262-398 78-203 (235)
58 cd08872 START_STARD11-like Cer 97.3 0.0029 6.3E-08 62.1 12.4 193 213-433 10-225 (235)
59 cd08913 START_STARD14-like Lip 96.9 0.0095 2.1E-07 58.8 11.3 117 271-398 86-208 (240)
60 cd08914 START_STARD15-like Lip 96.8 0.0076 1.6E-07 59.4 9.9 122 267-399 79-205 (236)
61 KOG1146 Homeobox protein [Gene 95.9 0.0025 5.4E-08 74.3 0.6 61 16-76 903-963 (1406)
62 KOG0773 Transcription factor M 95.5 0.011 2.4E-07 60.6 3.4 61 16-76 239-302 (342)
63 PF11569 Homez: Homeodomain le 94.7 0.0072 1.6E-07 46.7 -0.5 42 27-68 9-50 (56)
64 KOG4196 bZIP transcription fac 92.2 0.5 1.1E-05 42.5 6.8 87 21-142 22-109 (135)
65 PRK09413 IS2 repressor TnpA; R 91.6 0.58 1.3E-05 41.1 6.6 41 21-65 11-51 (121)
66 cd08860 TcmN_ARO-CYC_like N-te 91.6 1.1 2.5E-05 40.4 8.7 138 270-434 5-144 (146)
67 KOG2761 START domain-containin 89.4 2.1 4.6E-05 41.8 8.8 139 275-433 63-213 (219)
68 PF06005 DUF904: Protein of un 89.4 1.3 2.9E-05 35.9 6.3 47 77-145 17-63 (72)
69 cd07819 SRPBCC_2 Ligand-bindin 89.0 2.4 5.2E-05 36.3 8.2 106 270-400 6-113 (140)
70 cd08864 SRPBCC_DUF3074 DUF3074 88.4 2 4.3E-05 41.6 7.9 92 302-399 77-178 (208)
71 cd08866 SRPBCC_11 Ligand-bindi 88.0 3.9 8.4E-05 35.5 8.9 132 270-433 3-143 (144)
72 cd05018 CoxG Carbon monoxide d 85.7 5.5 0.00012 34.2 8.6 119 271-413 6-124 (144)
73 cd07813 COQ10p_like Coenzyme Q 85.2 5.2 0.00011 34.8 8.2 135 270-434 3-137 (138)
74 PF04218 CENP-B_N: CENP-B N-te 85.0 0.78 1.7E-05 34.8 2.5 46 17-67 1-46 (53)
75 KOG4005 Transcription factor X 84.7 5.4 0.00012 39.5 8.7 37 65-101 82-120 (292)
76 PF10604 Polyketide_cyc2: Poly 84.2 8.8 0.00019 32.5 9.1 35 271-309 7-41 (139)
77 PF12711 Kinesin-relat_1: Kine 82.4 3.9 8.5E-05 34.4 5.8 47 82-144 21-67 (86)
78 cd08861 OtcD1_ARO-CYC_like N-t 82.1 10 0.00023 32.7 8.8 138 271-434 4-142 (142)
79 cd08865 SRPBCC_10 Ligand-bindi 82.0 19 0.00041 30.3 10.3 136 271-433 4-139 (140)
80 PRK10724 hypothetical protein; 81.6 6.1 0.00013 36.4 7.4 137 269-435 18-154 (158)
81 cd07817 SRPBCC_8 Ligand-bindin 81.3 26 0.00057 29.8 11.0 134 271-433 5-138 (139)
82 KOG3623 Homeobox transcription 81.1 0.81 1.8E-05 51.4 1.7 47 28-74 568-614 (1007)
83 PRK15422 septal ring assembly 80.6 7.8 0.00017 32.1 6.8 52 73-139 13-64 (79)
84 smart00338 BRLZ basic region l 80.4 5.7 0.00012 31.0 5.9 40 77-138 25-64 (65)
85 PF02183 HALZ: Homeobox associ 80.2 4.6 0.0001 29.9 4.9 24 76-99 3-26 (45)
86 cd07822 SRPBCC_4 Ligand-bindin 75.7 14 0.0003 31.2 7.5 50 380-433 92-141 (141)
87 TIGR00219 mreC rod shape-deter 75.1 5.4 0.00012 40.4 5.4 42 79-138 67-108 (283)
88 PF00170 bZIP_1: bZIP transcri 75.0 12 0.00026 29.1 6.3 25 77-101 25-49 (64)
89 PRK13922 rod shape-determining 74.0 6.1 0.00013 39.3 5.5 42 78-138 69-110 (276)
90 PF01527 HTH_Tnp_1: Transposas 73.0 0.52 1.1E-05 37.2 -1.9 44 18-65 2-45 (76)
91 PF02183 HALZ: Homeobox associ 72.5 12 0.00025 27.8 5.2 40 82-143 2-41 (45)
92 cd07818 SRPBCC_1 Ligand-bindin 71.8 24 0.00053 30.7 8.3 51 381-433 99-149 (150)
93 cd07821 PYR_PYL_RCAR_like Pyra 70.5 27 0.00059 29.4 8.1 35 272-310 7-41 (140)
94 PF15058 Speriolin_N: Sperioli 70.2 19 0.0004 34.7 7.4 41 80-143 7-47 (200)
95 COG3074 Uncharacterized protei 68.2 27 0.0006 28.4 6.8 54 77-145 17-74 (79)
96 COG4026 Uncharacterized protei 66.5 18 0.00039 35.8 6.6 47 73-141 144-190 (290)
97 KOG4571 Activating transcripti 58.7 21 0.00046 36.4 5.8 44 74-139 244-287 (294)
98 KOG0971 Microtubule-associated 56.8 41 0.00089 39.3 8.1 53 84-143 338-390 (1243)
99 KOG0709 CREB/ATF family transc 54.4 68 0.0015 34.8 9.0 95 22-145 220-317 (472)
100 PF07407 Seadorna_VP6: Seadorn 54.2 17 0.00038 37.6 4.4 23 79-101 33-55 (420)
101 TIGR03752 conj_TIGR03752 integ 53.3 26 0.00056 38.1 5.7 26 22-50 41-66 (472)
102 cd07824 SRPBCC_6 Ligand-bindin 52.6 1.3E+02 0.0027 26.4 9.3 33 273-309 8-40 (146)
103 KOG1146 Homeobox protein [Gene 52.2 4 8.8E-05 48.8 -0.5 98 16-126 444-541 (1406)
104 PF14197 Cep57_CLD_2: Centroso 51.8 67 0.0014 25.8 6.6 46 79-139 20-65 (69)
105 cd07812 SRPBCC START/RHO_alpha 50.2 1.2E+02 0.0026 24.2 8.3 35 271-309 4-38 (141)
106 PF06156 DUF972: Protein of un 49.9 68 0.0015 28.0 6.8 18 124-141 39-56 (107)
107 TIGR02449 conserved hypothetic 49.7 77 0.0017 25.4 6.5 46 80-147 9-54 (65)
108 PF14389 Lzipper-MIP1: Leucine 49.4 1.3E+02 0.0029 25.1 8.3 69 70-142 7-75 (88)
109 KOG3119 Basic region leucine z 48.9 80 0.0017 31.8 8.2 54 77-145 200-253 (269)
110 PF06156 DUF972: Protein of un 47.7 55 0.0012 28.5 5.9 47 80-148 10-56 (107)
111 KOG4343 bZIP transcription fac 46.1 23 0.0005 39.0 3.9 26 222-251 438-463 (655)
112 COG1792 MreC Cell shape-determ 44.8 43 0.00094 33.9 5.6 43 77-138 65-107 (284)
113 PRK13169 DNA replication intia 44.3 91 0.002 27.4 6.7 18 123-140 38-55 (110)
114 smart00340 HALZ homeobox assoc 41.8 30 0.00064 25.5 2.7 20 124-143 15-34 (44)
115 KOG3119 Basic region leucine z 38.6 67 0.0015 32.3 5.8 26 118-143 219-244 (269)
116 PRK14872 rod shape-determining 38.5 57 0.0012 34.1 5.4 42 78-138 57-98 (337)
117 PRK13169 DNA replication intia 38.3 1.1E+02 0.0023 27.0 6.2 46 80-147 10-55 (110)
118 PHA03162 hypothetical protein; 38.0 28 0.00061 31.6 2.6 25 115-139 14-38 (135)
119 cd04765 HTH_MlrA-like_sg2 Heli 36.9 15 0.00032 31.3 0.7 20 47-66 4-23 (99)
120 KOG4343 bZIP transcription fac 36.9 87 0.0019 34.7 6.5 14 350-363 551-564 (655)
121 PF12808 Mto2_bdg: Micro-tubul 36.8 74 0.0016 24.4 4.3 20 122-141 30-49 (52)
122 PF04967 HTH_10: HTH DNA bindi 36.7 43 0.00094 25.6 3.1 37 23-59 1-39 (53)
123 PF07151 DUF1391: Protein of u 36.2 16 0.00034 27.0 0.6 8 419-426 38-45 (49)
124 PF01166 TSC22: TSC-22/dip/bun 35.6 52 0.0011 25.9 3.4 19 83-101 12-30 (59)
125 TIGR02894 DNA_bind_RsfA transc 34.5 1.5E+02 0.0033 27.8 6.9 19 124-142 128-146 (161)
126 KOG4196 bZIP transcription fac 34.2 2.6E+02 0.0057 25.4 8.1 21 124-144 98-118 (135)
127 cd06171 Sigma70_r4 Sigma70, re 32.7 14 0.0003 25.8 -0.2 42 22-68 10-51 (55)
128 PRK13729 conjugal transfer pil 32.3 4.4E+02 0.0096 29.0 10.9 64 61-139 59-122 (475)
129 TIGR03752 conj_TIGR03752 integ 32.2 1E+02 0.0022 33.7 6.1 24 77-100 72-95 (472)
130 PRK06266 transcription initiat 32.1 46 0.00099 31.5 3.2 34 103-137 136-169 (178)
131 KOG3156 Uncharacterized membra 32.0 1.7E+02 0.0037 28.7 7.1 49 77-146 93-141 (220)
132 PF04545 Sigma70_r4: Sigma-70, 31.9 24 0.00051 25.7 1.0 38 22-64 4-41 (50)
133 PF05812 Herpes_BLRF2: Herpesv 31.7 38 0.00083 30.2 2.4 23 117-139 6-28 (118)
134 PF00170 bZIP_1: bZIP transcri 31.6 1.6E+02 0.0035 22.7 5.7 18 124-141 43-60 (64)
135 KOG4005 Transcription factor X 31.3 1.2E+02 0.0026 30.3 6.0 26 76-101 102-127 (292)
136 PRK10884 SH3 domain-containing 30.9 1.8E+02 0.0039 28.3 7.1 16 86-101 133-148 (206)
137 PF03364 Polyketide_cyc: Polyk 30.3 1.3E+02 0.0028 25.4 5.5 33 275-311 2-34 (130)
138 PHA03155 hypothetical protein; 30.2 48 0.001 29.4 2.8 25 115-139 9-33 (115)
139 PF07407 Seadorna_VP6: Seadorn 29.6 49 0.0011 34.5 3.1 17 85-101 32-48 (420)
140 PRK10884 SH3 domain-containing 29.4 1.7E+02 0.0038 28.3 6.8 40 78-139 132-171 (206)
141 PF06785 UPF0242: Uncharacteri 29.1 1E+02 0.0022 32.3 5.3 30 118-147 96-125 (401)
142 PF07334 IFP_35_N: Interferon- 29.0 65 0.0014 26.6 3.2 19 125-143 4-22 (76)
143 cd00569 HTH_Hin_like Helix-tur 28.9 57 0.0012 20.0 2.4 37 22-63 5-41 (42)
144 PF06637 PV-1: PV-1 protein (P 28.8 4.7E+02 0.01 28.1 10.0 18 44-61 281-298 (442)
145 PRK13922 rod shape-determining 28.4 1.1E+02 0.0024 30.4 5.4 44 79-144 63-109 (276)
146 KOG0288 WD40 repeat protein Ti 28.3 2E+02 0.0044 31.0 7.4 118 259-395 228-348 (459)
147 PF04423 Rad50_zn_hook: Rad50 27.6 50 0.0011 24.8 2.2 9 105-113 22-30 (54)
148 PTZ00454 26S protease regulato 27.6 1.6E+02 0.0035 31.3 6.7 45 76-142 20-64 (398)
149 KOG4797 Transcriptional regula 27.6 4E+02 0.0087 23.6 7.9 38 76-135 58-95 (123)
150 PRK13729 conjugal transfer pil 27.5 1.8E+02 0.0039 31.8 7.1 31 411-441 359-389 (475)
151 TIGR00219 mreC rod shape-deter 27.5 1.3E+02 0.0027 30.6 5.6 44 82-144 63-107 (283)
152 PF07989 Microtub_assoc: Micro 27.4 2.9E+02 0.0062 22.6 6.7 60 77-143 6-65 (75)
153 PF05494 Tol_Tol_Ttg2: Toluene 26.4 1E+02 0.0022 28.3 4.4 55 304-363 86-140 (170)
154 TIGR02894 DNA_bind_RsfA transc 26.1 1.6E+02 0.0034 27.8 5.5 15 124-138 121-135 (161)
155 PF04977 DivIC: Septum formati 25.2 1.6E+02 0.0036 22.9 4.9 16 125-140 35-50 (80)
156 PF07106 TBPIP: Tat binding pr 25.0 1.5E+02 0.0033 27.2 5.4 73 60-145 56-133 (169)
157 PRK03918 chromosome segregatio 24.8 3.3E+02 0.0072 31.3 9.2 11 103-113 435-445 (880)
158 PF10482 CtIP_N: Tumour-suppre 24.6 52 0.0011 29.2 2.0 33 79-111 43-75 (120)
159 PF06005 DUF904: Protein of un 24.4 2.9E+02 0.0063 22.4 6.2 17 81-97 28-44 (72)
160 PRK02224 chromosome segregatio 23.0 3.9E+02 0.0084 30.9 9.2 12 102-113 450-461 (880)
161 smart00340 HALZ homeobox assoc 22.9 1.6E+02 0.0034 21.8 3.8 25 77-101 4-28 (44)
162 PF07106 TBPIP: Tat binding pr 22.8 3.5E+02 0.0077 24.8 7.3 18 124-141 119-136 (169)
163 PRK03975 tfx putative transcri 22.8 73 0.0016 29.2 2.7 47 21-73 5-51 (141)
164 KOG4571 Activating transcripti 22.7 2.5E+02 0.0055 28.8 6.7 18 124-141 258-275 (294)
165 PRK00888 ftsB cell division pr 22.5 90 0.0019 27.0 3.1 42 59-101 16-57 (105)
166 PRK00888 ftsB cell division pr 22.4 2.3E+02 0.0051 24.4 5.6 16 125-140 45-60 (105)
167 PF10668 Phage_terminase: Phag 22.1 26 0.00057 27.6 -0.3 19 45-63 24-42 (60)
168 PRK00118 putative DNA-binding 21.9 1.6E+02 0.0035 25.5 4.5 47 22-73 17-63 (104)
169 KOG0999 Microtubule-associated 21.8 1.7E+02 0.0037 32.8 5.6 63 64-138 149-211 (772)
170 COG1675 TFA1 Transcription ini 21.5 90 0.0019 29.7 3.1 43 96-139 124-167 (176)
171 cd04783 HTH_MerR1 Helix-Turn-H 21.3 1.9E+02 0.0041 25.3 5.0 39 17-68 33-71 (126)
172 PF00220 Hormone_4: Neurohypop 21.3 45 0.00097 16.9 0.5 9 379-387 1-9 (9)
173 PF13936 HTH_38: Helix-turn-he 21.0 29 0.00064 25.0 -0.2 39 20-63 2-40 (44)
174 TIGR02209 ftsL_broad cell divi 20.9 2.4E+02 0.0051 22.6 5.1 38 83-142 22-59 (85)
175 PF07716 bZIP_2: Basic region 20.2 3.8E+02 0.0081 20.0 6.9 17 124-140 35-51 (54)
176 PRK09413 IS2 repressor TnpA; R 20.1 2.1E+02 0.0045 24.9 5.0 13 124-136 88-100 (121)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=1.5e-94 Score=693.71 Aligned_cols=226 Identities=52% Similarity=0.915 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHHH
Q 046202 204 QSLMMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVE 283 (448)
Q Consensus 204 k~~~~~lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lve 283 (448)
|++|++||++||+||++||++++|||++++++ ++|+||+|||.++|++..+.++.||++||||+||+|+||+.+|||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~---~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe 77 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGM---KPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVE 77 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCC---CccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHH
Confidence 46899999999999999999999999999976 789999999999999999999999999999999999999999999
Q ss_pred HhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeecCCeEEEEEEecCCC
Q 046202 284 MLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWP 363 (448)
Q Consensus 284 ~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~~g~w~vvDvS~d~~ 363 (448)
+|||+++|.++||+||++|+|++||++|++|++||+|||||+|||+||||||+|||||||||+|++||+|||||||+|+.
T Consensus 78 ~lmD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~ 157 (229)
T cd08875 78 ILMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGV 157 (229)
T ss_pred HHhChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC---CCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHHHH
Q 046202 364 KDN---ISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCE 433 (448)
Q Consensus 364 ~~~---~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~ce 433 (448)
+.. ..++||+|+|||||||||+|||||||||||+|||++ .+|.+||++++||+||||+||+++||||||
T Consensus 158 ~~~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~-~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 158 QTAPPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEK-PVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred ccCCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCC-cccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 421 237899999999999999999999999999999999 999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.74 E-value=1.1e-17 Score=156.61 Aligned_cols=201 Identities=21% Similarity=0.271 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHHHHhcCh
Q 046202 209 ETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLLDS 288 (448)
Q Consensus 209 ~lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lve~lmD~ 288 (448)
|+|.++|.+++++++.++.-|....+. -+.+.|.+..+.. .+..+..-|..++|.....++++.|+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~-------~~~~~~~~~~~~~-----~~~~~~~~k~~~~v~~~~~~~~~~~~~~ 68 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDK-------KNGDVYYKKVSPS-----DSCPIKMFKAEGVVPASPEQVVEDLLDD 68 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEE-------TTTCEEEEEEECS-----SSTSCEEEEEEEEESSCHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEcc-------CCCeEEEEEeCcc-----ccccceEEEEEEEEcCChHHHHHHHHhh
Confidence 589999999999999999999886521 1111222223111 1135678899999999999999999998
Q ss_pred h-hhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeecCCeEEEEEEecCCCCCCC
Q 046202 289 D-KWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWPKDNI 367 (448)
Q Consensus 289 ~-~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~~g~w~vvDvS~d~~~~~~ 367 (448)
. +|-.++-.+ ++++.++.+ ..|..++.++..++|+.| |||.++|++++..+|.++|+..|++.....+
T Consensus 69 ~~~Wd~~~~~~----~~le~~~~~------~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~ 137 (206)
T PF01852_consen 69 REQWDKMCVEA----EVLEQIDED------TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPP 137 (206)
T ss_dssp GGHHSTTEEEE----EEEEEEETT------EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSST
T ss_pred Hhhcccchhhh----eeeeecCCC------CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccc
Confidence 8 999988755 999998875 478888888999999999 9999999999999999999999998654332
Q ss_pred ---CCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHHHH
Q 046202 368 ---SSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCE 433 (448)
Q Consensus 368 ---~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~ce 433 (448)
.++|+..++||++|++.++|.|+||+|-|++..-+ ...-+.+.++.++...-++.+.+.|++|++
T Consensus 138 ~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~-iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 138 NSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGW-IPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp T-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSS-SHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred cccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCC-ChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 37999999999999999999999999999999988 667899999999888878888888888765
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.74 E-value=7e-17 Score=151.65 Aligned_cols=202 Identities=29% Similarity=0.479 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhh-HHHHhcCh
Q 046202 210 TATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQ-LVEMLLDS 288 (448)
Q Consensus 210 lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~-lve~lmD~ 288 (448)
-|+.++.|+++++...+..|....++ +.+..+ |.+ . .+.+..+.+-|..++|...+.+ ++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~-~~~~~~-----~~~-~------~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~ 68 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSEN-ENGDEV-----RSI-L------SPGRSPGEASRAVGVVPMVCADLVEELMDDL 68 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEcccc-CCcceE-----EEE-c------cCCCCceEEEEEEEEEecChHHHHHHHHhcc
Confidence 36788999999999999999987642 112211 222 2 1113457899999999999998 55667665
Q ss_pred hhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeecCCeEEEEEEecCCCCC--C
Q 046202 289 DKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWPKD--N 366 (448)
Q Consensus 289 ~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~~g~w~vvDvS~d~~~~--~ 366 (448)
.+...+-..+..+++|+.++.+ ..+......+.. +| +++|||.++|++++.++|.|+|+..|++.... .
T Consensus 69 -~~r~~Wd~~~~~~~~ie~~~~~------~~i~~~~~~~~~-~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~ 139 (206)
T smart00234 69 -RYRPEWDKNVAKAETLEVIDNG------TVIYHYVSKFVA-GP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPT 139 (206)
T ss_pred -cchhhCchhcccEEEEEEECCC------CeEEEEEEeccc-Cc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCC
Confidence 3333333333455999988754 233333333333 35 55699999999999999999999999986432 2
Q ss_pred CCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHHHHH
Q 046202 367 ISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCER 434 (448)
Q Consensus 367 ~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~cer 434 (448)
..++|+..++||++|+++++|.|+|||+.|++..-+ ..+-+.+.++.++....+++|.+.|+++|++
T Consensus 140 ~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 140 SGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 237999999999999999999999999999999988 6678999999999999999999999999973
No 4
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.64 E-value=2.2e-16 Score=149.65 Aligned_cols=83 Identities=28% Similarity=0.481 Sum_probs=78.1
Q ss_pred CCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHhhhHHHHHhhHHHHHhHHHHH
Q 046202 19 TCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIR 98 (448)
Q Consensus 19 ~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~~~L~~ene~L~~en~~l~ 98 (448)
+..|+|.+|...||..|+...+..+.++..||++|||.++||++||||||+|||.++...+...|+.+.+.|+.+|..++
T Consensus 53 kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq 132 (198)
T KOG0483|consen 53 KKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQ 132 (198)
T ss_pred ccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHH
Confidence 33379999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHh
Q 046202 99 EAL 101 (448)
Q Consensus 99 ~a~ 101 (448)
...
T Consensus 133 ~e~ 135 (198)
T KOG0483|consen 133 SEV 135 (198)
T ss_pred HHH
Confidence 765
No 5
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.57 E-value=1.4e-15 Score=153.61 Aligned_cols=67 Identities=31% Similarity=0.431 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHH
Q 046202 11 NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNER 77 (448)
Q Consensus 11 ~~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 77 (448)
..++|+||.|+.||..|+..||+.|++.+|.+..+|.+||..|||+..|||+||||||+||||+...
T Consensus 167 ~~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 167 STPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 4567788899999999999999999999999999999999999999999999999999999997554
No 6
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.57 E-value=2e-15 Score=150.96 Aligned_cols=67 Identities=28% Similarity=0.401 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHhh
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERAN 79 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e 79 (448)
+++|||+|..||..|+.+||+.|+..+|++..+|+.||..|+|+++||||||||||-|.||+++.+.
T Consensus 150 ~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 150 KRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred cccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 5678888889999999999999999999999999999999999999999999999999999766554
No 7
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.55 E-value=1.9e-15 Score=139.60 Aligned_cols=65 Identities=31% Similarity=0.424 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHh
Q 046202 14 NKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERA 78 (448)
Q Consensus 14 ~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 78 (448)
.+.||.||.||.+|+..||..|+.|+|....+|++||..|+|++.||||||||||+|.||++.+.
T Consensus 100 ~~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 100 MRPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred cCCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999999999999999999999987664
No 8
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.49 E-value=4.8e-15 Score=146.55 Aligned_cols=65 Identities=31% Similarity=0.392 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHh
Q 046202 14 NKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERA 78 (448)
Q Consensus 14 ~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 78 (448)
.+.||.|+.||..|+.+||+.|..++|.+...|.+||..|.|+++||||||||||.||||..+..
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~ 221 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAK 221 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Confidence 45788899999999999999999999999999999999999999999999999999999954433
No 9
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.49 E-value=4.5e-15 Score=126.00 Aligned_cols=65 Identities=25% Similarity=0.478 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 11 NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 11 ~~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
.+++|+||-|+.||..|+.+||+.|.+.+||+.-.|++||.++.|++..|||||||||+|.|++.
T Consensus 12 ~ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQE 76 (125)
T KOG0484|consen 12 TEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQE 76 (125)
T ss_pred hHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999853
No 10
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.47 E-value=2.1e-14 Score=143.80 Aligned_cols=65 Identities=32% Similarity=0.431 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHh
Q 046202 14 NKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERA 78 (448)
Q Consensus 14 ~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 78 (448)
++.||||.-+|..|+.+||+.|--|.|++.+.|.+|++.|+|+++||||||||||.|+||..++.
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~ 297 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNREN 297 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhh
Confidence 55677777899999999999999999999999999999999999999999999999999976543
No 11
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.47 E-value=2.1e-14 Score=135.95 Aligned_cols=63 Identities=30% Similarity=0.381 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
+.+|||.||.|+..|+..||..|+...|.+..+|..||++|.|++.|||+||||||.||||+.
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~ 163 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQY 163 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHH
Confidence 447888999999999999999999999999999999999999999999999999999999964
No 12
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.46 E-value=3e-14 Score=136.14 Aligned_cols=64 Identities=28% Similarity=0.413 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
++|.||.||-++.-|++.|.+.|++++|+.-.+|.+||..|||+..||||||||||.|.||..+
T Consensus 119 ~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 119 GKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred cccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHh
Confidence 3556788999999999999999999999999999999999999999999999999999999765
No 13
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.45 E-value=5.9e-14 Score=133.50 Aligned_cols=68 Identities=26% Similarity=0.490 Sum_probs=63.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHh
Q 046202 11 NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERA 78 (448)
Q Consensus 11 ~~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 78 (448)
..++|.||.||+||..|+.+||..|.+.+|||...|++||.+|+|.+.+|+|||+|||+|+|++++.+
T Consensus 32 ~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 32 SGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred ccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999999976654
No 14
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.44 E-value=3.7e-14 Score=108.03 Aligned_cols=57 Identities=42% Similarity=0.764 Sum_probs=54.5
Q ss_pred CCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 17 KITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
|++|+.||.+|+..|+..|..++||+..++..||.++||++.||++||+|||.++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567789999999999999999999999999999999999999999999999999885
No 15
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.40 E-value=1.4e-13 Score=133.25 Aligned_cols=69 Identities=30% Similarity=0.444 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHhhhHHHHHhhH
Q 046202 20 CHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERANNSVLRAENE 88 (448)
Q Consensus 20 rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~~~L~~ene 88 (448)
||.||..|+..||+.|++.+||+...|+-||..+.|++.+|+|||||||+||||..++.......+|+-
T Consensus 145 RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeyg 213 (332)
T KOG0494|consen 145 RTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYG 213 (332)
T ss_pred cchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhc
Confidence 678999999999999999999999999999999999999999999999999999888877665555443
No 16
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.40 E-value=2.2e-13 Score=128.33 Aligned_cols=61 Identities=31% Similarity=0.460 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 16 GKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 16 ~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
.||.|+-||.+|+..||+.|++.+|.+..+|.+++..|.|++.|||+||||||+|.||.++
T Consensus 144 nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 144 NRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred CCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999544
No 17
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.37 E-value=1.3e-13 Score=134.02 Aligned_cols=63 Identities=29% Similarity=0.431 Sum_probs=57.4
Q ss_pred CCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHhh
Q 046202 17 KITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERAN 79 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e 79 (448)
-|-|.++|..|..+||+.|..++|.++..+.+||..|||++||||+||||||+|+||.++++.
T Consensus 200 DKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 200 DKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred cceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 344668999999999999999999999999999999999999999999999999999765543
No 18
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.32 E-value=2.5e-11 Score=111.07 Aligned_cols=188 Identities=19% Similarity=0.299 Sum_probs=135.8
Q ss_pred HHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHHHHhcChhhhh
Q 046202 213 NAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLLDSDKWV 292 (448)
Q Consensus 213 ~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lve~lmD~~~W~ 292 (448)
.|..+++.+.+.+ ..|-...+. + +..-|.+..+. -....-|..++|..++.++.++|+|.+.-.
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~-----~--~v~vy~~~~~~--------~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~ 65 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEK-----D--GVKIYTKPYED--------SGLKLLKAEGVIPASPEQVFELLMDIDLRK 65 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEEC-----C--cEEEEEecCCC--------CCceeEEEEEEECCCHHHHHHHHhCCchhh
Confidence 4566777777766 679776433 1 22234443421 133678899999999999999999944333
Q ss_pred hhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeecCCeEEEEEEecCCC--CCCCCCc
Q 046202 293 DLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWP--KDNISSS 370 (448)
Q Consensus 293 ~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~~g~w~vvDvS~d~~--~~~~~~~ 370 (448)
.-.+ .+.++++++.++.+ ..++|..+..+.| +++|||.++|++.+.++|.++|+..|+|.. ......+
T Consensus 66 ~w~~-~~~~~~vl~~~~~~--------~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~v 135 (193)
T cd00177 66 KWDK-NFEEFEVIEEIDEH--------TDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYV 135 (193)
T ss_pred chhh-cceEEEEEEEeCCC--------eEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcE
Confidence 2223 23455777766532 6789999999999 999999999999999999999999999973 2222378
Q ss_pred ccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHH
Q 046202 371 HCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRT 431 (448)
Q Consensus 371 ~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~ 431 (448)
|+..++||++|+++++|.|+||++-|++..-+ ++ ..++++.+.-.+..++..++.+
T Consensus 136 R~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~--iP---~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 136 RAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS--IP---KSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred EEEEEccEEEEEECCCCCEEEEEEEeeCCCCC--cc---HHHHHhhhhhccHHHHHHHHHh
Confidence 99999999999999999999999999998866 22 3555555555555665555543
No 19
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.31 E-value=7.5e-13 Score=128.36 Aligned_cols=61 Identities=39% Similarity=0.577 Sum_probs=57.1
Q ss_pred CCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHH
Q 046202 17 KITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNER 77 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 77 (448)
||.|+.||.+|++.|...|+++.|.+...|++||.+|+|.+.|||+||||+|+|.||-..-
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsTgs 307 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKSTGS 307 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhccCC
Confidence 5678899999999999999999999999999999999999999999999999999985443
No 20
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.28 E-value=1.7e-12 Score=97.99 Aligned_cols=55 Identities=36% Similarity=0.641 Sum_probs=51.5
Q ss_pred CCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHh
Q 046202 18 ITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72 (448)
Q Consensus 18 r~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 72 (448)
+.+++++.+|+..|+..|..++||+..++..||.++||+..||+.||+|||.+.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 4556799999999999999999999999999999999999999999999998854
No 21
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.28 E-value=5.9e-12 Score=97.49 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=50.5
Q ss_pred CCCCCCCCCHHHHHHHHHhHhcCCC----CCHHHHHHHHHHhCCCcceeeeeccccc
Q 046202 16 GKITCHRHTTHQIQTLEAFFKDCPH----PDENQRRQLSKELGLDLKQIKFWFQNKR 68 (448)
Q Consensus 16 ~Kr~rtr~T~eQl~~LE~~F~~~~~----Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 68 (448)
+||.||.||++|+..|+.+|..++| |+...+.+||..+||++++||+||||-+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 3778899999999999999999999 9999999999999999999999999965
No 22
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.27 E-value=2.2e-12 Score=98.01 Aligned_cols=57 Identities=40% Similarity=0.693 Sum_probs=53.4
Q ss_pred CCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 18 ITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 18 r~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
+++..++..|+..|+..|..++||+..++..||.++||+++||+.||+|||.+.++.
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 455689999999999999999999999999999999999999999999999998763
No 23
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.26 E-value=2.7e-12 Score=117.93 Aligned_cols=69 Identities=30% Similarity=0.421 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHhh
Q 046202 11 NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERAN 79 (448)
Q Consensus 11 ~~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e 79 (448)
++....+++|+|.|..|+.+|++.|..++||+...|..|+..++|+++-|++||||||++.|+......
T Consensus 46 ~~s~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 46 DGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred cCCCcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 344566777778999999999999999999999999999999999999999999999999998755443
No 24
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.17 E-value=1.5e-11 Score=122.17 Aligned_cols=60 Identities=27% Similarity=0.470 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 15 KGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 15 k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
|+||.|+.||.+|+++||..|+++.||+...|++||..++|++..|+|||.|||+||||.
T Consensus 111 KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkr 170 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 170 (351)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhh
Confidence 567778899999999999999999999999999999999999999999999999999993
No 25
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.16 E-value=2.4e-11 Score=124.41 Aligned_cols=62 Identities=21% Similarity=0.410 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
..|||||||.+....+..||.+|.+|++|+..+...||.+|+|++..|+|||+|||.|.||.
T Consensus 291 ~~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~ 352 (398)
T KOG3802|consen 291 QSRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRI 352 (398)
T ss_pred cccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccC
Confidence 34788899999999999999999999999999999999999999999999999999999985
No 26
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.15 E-value=3.7e-12 Score=116.39 Aligned_cols=65 Identities=26% Similarity=0.403 Sum_probs=59.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHhh
Q 046202 15 KGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERAN 79 (448)
Q Consensus 15 k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e 79 (448)
+++|.|+.|+..|+..||+.|+...|.+..+|.+||..|+|+++|||.||||||.|.||++++.+
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 35677899999999999999999999999999999999999999999999999999999765544
No 27
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.13 E-value=1.4e-09 Score=104.60 Aligned_cols=198 Identities=15% Similarity=0.200 Sum_probs=144.1
Q ss_pred HHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeE-EechhhHHHHhcCh---
Q 046202 213 NAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMV-TMNGMQLVEMLLDS--- 288 (448)
Q Consensus 213 ~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V-~~~~~~lve~lmD~--- 288 (448)
..+++|+.++..+ .-|-...+. +| .++|.+.. .+...-.-|..+++ ...+..+.+.|+|.
T Consensus 10 ~~~~~~~~~~~~~-~~W~~~~~~--~g---------i~iy~r~~----~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r 73 (222)
T cd08871 10 ADFEEFKKLCDST-DGWKLKYNK--NN---------VKVWTKNP----ENSSIKMIKVSAIFPDVPAETLYDVLHDPEYR 73 (222)
T ss_pred HHHHHHHHHhcCC-CCcEEEEcC--CC---------eEEEEeeC----CCCceEEEEEEEEeCCCCHHHHHHHHHChhhh
Confidence 7889999999654 479765422 01 12232221 12233445666665 57889999999996
Q ss_pred hhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeecCCeEEEEEEecCCCC--CC
Q 046202 289 DKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWPK--DN 366 (448)
Q Consensus 289 ~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~~g~w~vvDvS~d~~~--~~ 366 (448)
.+|-..|-. +.+|+.+.. ...++|..+..|-| |..|||.++|..+..+ |..+|+..|++... ..
T Consensus 74 ~~Wd~~~~e----~~~ie~~d~--------~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~ 139 (222)
T cd08871 74 KTWDSNMIE----SFDICQLNP--------NNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPR 139 (222)
T ss_pred hhhhhhhce----eEEEEEcCC--------CCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCC
Confidence 666665543 377776642 23678888888888 8999999999988766 88899999997431 11
Q ss_pred CCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHHHHHHHHhhccCCCC
Q 046202 367 ISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCERLLAENSQSIHE 445 (448)
Q Consensus 367 ~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~cer~a~~~~~~~~~ 445 (448)
..++|.....+|++|++.+++.|+|||+-|++..-+ ++. -+++....-.+-.++..|.++|+.+..-++.+-|+
T Consensus 140 ~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~--IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 140 KGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS--LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred CCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC--cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 127899999999999999888999999999998765 332 45666666667799999999999998877766553
No 28
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.10 E-value=2.2e-09 Score=102.03 Aligned_cols=193 Identities=12% Similarity=0.170 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHHHHhc
Q 046202 207 MMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLL 286 (448)
Q Consensus 207 ~~~lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lve~lm 286 (448)
+-.+|..|.+|++.+.. .+.-|-...+. ++- +.|.+.. .++..-.-|..|.|..++.++++.|+
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~~--~~i---------~v~~~~~----~~~~~~~~k~~~~i~~~~~~v~~~l~ 66 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKTV--KNI---------TVSWKPS----TEFTGHLYRAEGIVDALPEKVIDVII 66 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEcC--CCc---------EEEEecC----CCCCCEEEEEEEEEcCCHHHHHHHHH
Confidence 34678899999999987 44779775422 011 1232211 11211235888899999999999999
Q ss_pred C-----hhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhc-cCccccCceeEEEEeeeeecCCeEEEEEEec
Q 046202 287 D-----SDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHI-LSPLVSPREYYFLRHCQQIELGLWVIVDVSY 360 (448)
Q Consensus 287 D-----~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v-~SPlvp~Re~~flRyc~q~~~g~w~vvDvS~ 360 (448)
| ..+|...| ..++.|+-|..+ ..++|...-- +.|+|.+|||.++||.++.++|.++|+-.|+
T Consensus 67 d~~~~~r~~Wd~~~----~~~~~le~id~~--------~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv 134 (206)
T cd08867 67 PPCGGLRLKWDKSL----KHYEVLEKISED--------LCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSV 134 (206)
T ss_pred hcCccccccccccc----cceEEEEEeCCC--------eEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEec
Confidence 8 46787665 455888877532 2445553221 2357999999999999999999999999999
Q ss_pred CCC--CCCCCCcccccCCccceeeeCC--CCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHHH
Q 046202 361 EWP--KDNISSSHCWRLPSGFMIQDMT--NGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTC 432 (448)
Q Consensus 361 d~~--~~~~~~~~~~r~PSGclIq~~~--ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~c 432 (448)
+.. .+.+.++|+...++|++|++.+ ++.|+|||+-|++..-+ |=+-++++.++=+.--|+-.|++|.
T Consensus 135 ~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-----iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 135 DIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-----IPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred cCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-----CcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 643 2222379999999999999876 57899999999988755 3346677777766667888888874
No 29
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.10 E-value=2.7e-11 Score=119.78 Aligned_cols=59 Identities=32% Similarity=0.367 Sum_probs=55.9
Q ss_pred CCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 16 GKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 16 ~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
-||-||.||.+||..||+.|-+..|.+...|.+||..|+|++..|||||||||.|+|||
T Consensus 181 mRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQ 239 (408)
T KOG0844|consen 181 MRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 239 (408)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhh
Confidence 35667889999999999999999999999999999999999999999999999999995
No 30
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.09 E-value=9.2e-11 Score=115.35 Aligned_cols=67 Identities=33% Similarity=0.587 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHhh
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERAN 79 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e 79 (448)
....||.||.+|+.|++.|...|+..+.|....|++|+.++||.-+.|||||||||+|.||.++..-
T Consensus 164 d~~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAG 230 (383)
T KOG4577|consen 164 DASNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAG 230 (383)
T ss_pred ccccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcc
Confidence 3456888999999999999999999999999999999999999999999999999999999766544
No 31
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.07 E-value=3.4e-11 Score=114.45 Aligned_cols=62 Identities=34% Similarity=0.487 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 14 NKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 14 ~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
.++|..|..|+..|+..||..|...+|+-..+|.+||..+|+++.||+|||||||+||||+.
T Consensus 165 G~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkh 226 (288)
T KOG0847|consen 165 GQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKH 226 (288)
T ss_pred ccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhh
Confidence 45666777899999999999999999999999999999999999999999999999999964
No 32
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.02 E-value=5.6e-09 Score=99.42 Aligned_cols=194 Identities=18% Similarity=0.252 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHHHH-h
Q 046202 207 MMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEM-L 285 (448)
Q Consensus 207 ~~~lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lve~-l 285 (448)
-..++..|++|++.+.. ++-|-...+. . +....|.+.. + | ..-.-|..++|...+..+++. +
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~---~-------~~i~i~~r~~-~---~-~~~~~k~~~~i~~~~~~v~~~l~ 68 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNT---T-------WGDVVYSRNV-P---G-VGKVFRLTGVLDCPAEFLYNELV 68 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEec---C-------CCCEEEEEEc-C---C-CceEEEEEEEEcCCHHHHHHHHH
Confidence 56788899999999954 5589665422 0 0112232221 1 1 114578889999999999764 4
Q ss_pred cCh---hhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhcc-CccccCceeEEEEeeeeecCCeEEEEEEecC
Q 046202 286 LDS---DKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHIL-SPLVSPREYYFLRHCQQIELGLWVIVDVSYE 361 (448)
Q Consensus 286 mD~---~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~-SPlvp~Re~~flRyc~q~~~g~w~vvDvS~d 361 (448)
.|. .+|-..|-.. +.|+.+.. ...++|.-+.-+ .++|..|||.++|+.++.+ |.++|+..|++
T Consensus 69 ~d~~~~~~Wd~~~~~~----~~i~~~d~--------~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~ 135 (208)
T cd08868 69 LNVESLPSWNPTVLEC----KIIQVIDD--------NTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVE 135 (208)
T ss_pred cCccccceecCcccce----EEEEEecC--------CcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEecc
Confidence 453 6777776444 77776642 224555333222 3689999999999999866 77999999987
Q ss_pred CCC--CCCCCcccccCCccceeeeCCC--CcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHHHHHH
Q 046202 362 WPK--DNISSSHCWRLPSGFMIQDMTN--GCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCERL 435 (448)
Q Consensus 362 ~~~--~~~~~~~~~r~PSGclIq~~~n--g~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~cer~ 435 (448)
... +...++|....++|++|+++++ +.|+|||+-|++..-+ ++ .-++++.+.-+.-.++..|.++|+.|
T Consensus 136 h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~--iP---~~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 136 HPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW--LP---QYLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred CCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC--Cc---ceeeehhhHHHHHHHHHHHHHHHhhC
Confidence 421 1223799999999999999987 6899999999988755 33 25578888888889999999999753
No 33
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.89 E-value=2.6e-08 Score=95.54 Aligned_cols=171 Identities=14% Similarity=0.265 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHHHHhc
Q 046202 207 MMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLL 286 (448)
Q Consensus 207 ~~~lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lve~lm 286 (448)
...|+.+|++|++.+-+ +.-.|-.-..+ ...+ .+.+. ...+.+---|..|+|..++.+|++.+.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~gWk~~k~~---~~~~--------v~~k~----~~~~~gkl~k~egvi~~~~e~v~~~l~ 66 (204)
T cd08904 3 FKKIAQETSQEVLGYSR-DTSGWKVVKTS---KKIT--------VSWKP----SRKYHGNLYRVEGIIPESPAKLIQFMY 66 (204)
T ss_pred HHHHHHHHHHHHHhhhh-cccCCeEEecC---CceE--------EEEEE----cCCCCceEEEEEEEecCCHHHHHHHHh
Confidence 35688999999999977 55788654322 1111 12111 112333567899999999999999999
Q ss_pred ChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhh-ccCccccCceeEEEEeeeeecCCeEEEEEEecCCCC-
Q 046202 287 DSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMH-ILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWPK- 364 (448)
Q Consensus 287 D~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~-v~SPlvp~Re~~flRyc~q~~~g~w~vvDvS~d~~~- 364 (448)
|.+.-.+--+ .+...+.|+-|... ..+.|.-++ .+-++|-+|||..+||.++.++|.++|...|++.-.
T Consensus 67 ~~e~r~~Wd~-~~~~~~iie~Id~~--------T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~ 137 (204)
T cd08904 67 QPEHRIKWDK-SLQVYKMLQRIDSD--------TFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQC 137 (204)
T ss_pred ccchhhhhcc-cccceeeEEEeCCC--------cEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCC
Confidence 9765554444 44666777776632 245554443 455789999999999999999999999999997543
Q ss_pred -CCCCCcccccCCccceeeeCCCC--cceEEEEEeeeecCc
Q 046202 365 -DNISSSHCWRLPSGFMIQDMTNG--CSNVTWLEHVEVDDK 402 (448)
Q Consensus 365 -~~~~~~~~~r~PSGclIq~~~ng--~skVtwveH~e~d~~ 402 (448)
+...++|+.-.|+||+|++.+++ +|++||+-+++..-+
T Consensus 138 Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 138 PPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 22238999999999999999874 899999999877644
No 34
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.83 E-value=2.2e-09 Score=102.59 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
..++|+.|+.|+..|+..||+.|...+||+...|+.||..+++++..|++||||||+|++++.
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhh
Confidence 456778888999999999999999999999999999999999999999999999999999854
No 35
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.74 E-value=2.1e-07 Score=89.15 Aligned_cols=166 Identities=15% Similarity=0.178 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHHHHhc
Q 046202 207 MMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLL 286 (448)
Q Consensus 207 ~~~lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lve~lm 286 (448)
..+++..|+++++.+-+ ++.-|-...++ ++.++|.+..... .| =.-|.-|+|..++.+|++.|+
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~W~~~~~~-----------~~i~v~~~~~~~~-~~---~~~k~e~~i~~s~~~~~~~l~ 66 (208)
T cd08903 3 YAELAESVADKMLLYRR-DESGWKTCRRT-----------NEVAVSWRPSAEF-AG---NLYKGEGIVYATLEQVWDCLK 66 (208)
T ss_pred HHHHHHHHHHHHHhhhc-cccCCEEEEcC-----------CCEEEEeeecCCC-CC---cEEEEEEEecCCHHHHHHHHH
Confidence 35788999999999874 66779665432 1222343311111 01 126888999999999999999
Q ss_pred Ch-----hhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCc---cccCceeEEEEeeeeecCCeEEEEEE
Q 046202 287 DS-----DKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSP---LVSPREYYFLRHCQQIELGLWVIVDV 358 (448)
Q Consensus 287 D~-----~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SP---lvp~Re~~flRyc~q~~~g~w~vvDv 358 (448)
|. .+|-..|-.+ +.|+-|... ..+.|. ..+.| +|.+|||..+|+.++.++|..+|.-.
T Consensus 67 d~~~~~r~~W~~~~~~~----~vle~id~~--------~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~ 132 (208)
T cd08903 67 PAAGGLRVKWDQNVKDF----EVVEAISDD--------VSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNAT 132 (208)
T ss_pred hccchhhhhhhhccccE----EEEEEecCC--------EEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEE
Confidence 65 5898888665 878877632 223333 44555 79999999999999999999887777
Q ss_pred ecCCC--CCCCCCcccccCCccceeeeCCC--CcceEEEEEeeeecCc
Q 046202 359 SYEWP--KDNISSSHCWRLPSGFMIQDMTN--GCSNVTWLEHVEVDDK 402 (448)
Q Consensus 359 S~d~~--~~~~~~~~~~r~PSGclIq~~~n--g~skVtwveH~e~d~~ 402 (448)
|++.- .+.+.++|....|+|++|...++ +.|+|||+-|++..-+
T Consensus 133 sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~ 180 (208)
T cd08903 133 NVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY 180 (208)
T ss_pred eccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC
Confidence 77652 22234899999999999999964 5899999988877644
No 36
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.60 E-value=2.3e-08 Score=103.20 Aligned_cols=64 Identities=33% Similarity=0.563 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
.+++.++.|+.|+..|+..||..|+.++||+...|++||.++++++..|++||+|||++++|..
T Consensus 172 ~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 172 LQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred ccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcc
Confidence 3455667788999999999999999999999999999999999999999999999999999853
No 37
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.60 E-value=6.7e-07 Score=85.93 Aligned_cols=128 Identities=18% Similarity=0.285 Sum_probs=98.4
Q ss_pred CCeeeeecceeeEEechhhHH-HHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeE
Q 046202 262 SARVESSKYSGMVTMNGMQLV-EMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYY 340 (448)
Q Consensus 262 ~~~~easR~~~~V~~~~~~lv-e~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~ 340 (448)
+...-.-|.+..|.-.+..++ .++-++..|-..|- .+++|+-|.- ...+.|--+.-+.|+ |.|+|+
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~----~~~~ie~ld~--------~tdi~~y~~~~~~P~-~~RD~v 114 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDFL----QWKVVETLDK--------QTEVYQYVLNCMAPH-PSRDFV 114 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcc----eeEEEEEeCC--------CcEEEEEEeecCCCC-CCCEEE
Confidence 444567777777777777764 56777888988884 4477777652 235566666666675 999999
Q ss_pred EEEeeee-ecCCeEEEEEEecCCCCCCC-CCcccccCCccceeeeCCCCcceEEEEEeeeecCc
Q 046202 341 FLRHCQQ-IELGLWVIVDVSYEWPKDNI-SSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDK 402 (448)
Q Consensus 341 flRyc~q-~~~g~w~vvDvS~d~~~~~~-~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~ 402 (448)
.+|+-++ .++|..+|+..|++.....+ .++|+..+-+|++|+++++|.|+||++-|++..-+
T Consensus 115 ~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 115 VLRSWRTDLPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred EEEEEEEeCCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 9999765 46999999999999764322 26899999999999999999999999999987644
No 38
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.57 E-value=4.5e-08 Score=96.76 Aligned_cols=62 Identities=23% Similarity=0.427 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
...+||+||.+.+...+.||++|...|.|+.+....+|++|.|.+..|+|||+|+|.|.||.
T Consensus 306 ~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm 367 (385)
T KOG1168|consen 306 GGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 367 (385)
T ss_pred ccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHh
Confidence 44578888899999999999999999999999999999999999999999999999998884
No 39
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.56 E-value=5.5e-07 Score=86.35 Aligned_cols=193 Identities=12% Similarity=0.222 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHHHHh
Q 046202 206 LMMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEML 285 (448)
Q Consensus 206 ~~~~lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lve~l 285 (448)
-...++..|++|++++.+ .+.-|-....+ +.|--+ |.+.+|.. | -+-|..++|..++.+|++.|
T Consensus 5 ~y~~~~~~~~~~~~~~~~-~~~~W~~~~~~-~~gi~v-----~s~~~~~~------~---k~~k~e~~i~~~~~~l~~~l 68 (209)
T cd08905 5 SYIKQGEEALQKSLSILQ-DQEGWKTEIVA-ENGDKV-----LSKVVPDI------G---KVFRLEVVVDQPLDNLYSEL 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhc-cccCCEEEEec-CCCCEE-----EEEEcCCC------C---cEEEEEEEecCCHHHHHHHH
Confidence 356789999999999986 56689664211 001112 22323111 1 45566779999999999555
Q ss_pred c-Ch---hhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCc--cccCceeEEEEeeeeecCCeEEEEEEe
Q 046202 286 L-DS---DKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSP--LVSPREYYFLRHCQQIELGLWVIVDVS 359 (448)
Q Consensus 286 m-D~---~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SP--lvp~Re~~flRyc~q~~~g~w~vvDvS 359 (448)
. |. .+|...+-.+ +.|+.++. .-.++|. ...+.| +|..|||..+|+.++.+++. +++..|
T Consensus 69 ~~d~e~~~~W~~~~~~~----~vl~~id~--------~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s 134 (209)
T cd08905 69 VDRMEQMGEWNPNVKEV----KILQRIGK--------DTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMA 134 (209)
T ss_pred HhchhhhceecccchHH----HHHhhcCC--------CceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEe
Confidence 5 53 5666666443 55555442 1245664 656766 79999999999999986654 555677
Q ss_pred cCCCC--CCCCCcccccCCccceeeeCCC--CcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHHHH
Q 046202 360 YEWPK--DNISSSHCWRLPSGFMIQDMTN--GCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCE 433 (448)
Q Consensus 360 ~d~~~--~~~~~~~~~r~PSGclIq~~~n--g~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~ce 433 (448)
.+.-. +...++|.+..++|++|+++++ |.++|||+-|++..-+ +| ..+++..++=..-.++..|+++.+
T Consensus 135 ~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~--iP---~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 135 THFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW--LP---KSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred ecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC--CC---HHHHHHHhHHhHHHHHHHHHHHHh
Confidence 65321 2223799999999999999988 9999999999987755 33 356666666656678888888765
No 40
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.55 E-value=9.6e-07 Score=83.85 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=119.6
Q ss_pred HHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHHHHhcCh-hh
Q 046202 212 TNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLLDS-DK 290 (448)
Q Consensus 212 ~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lve~lmD~-~~ 290 (448)
+.+.++|++-+...+.-|.-..+- .|-.+ |.|.. +.++..-+=|..++|...+.++++.|+|. .+
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~--~gi~I-----~~k~~-------~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~ 69 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSS--DHVEL-----AFKKV-------DDGHPLRLWRASTEVEAPPEEVLQRILRERHL 69 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecC--CcEEE-----EEEeC-------CCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhc
Confidence 467889999999889999764321 12222 22222 12444566788889998999999877764 45
Q ss_pred hhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeee-ecCCeEEEEEEecCC--CCCCC
Q 046202 291 WVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQ-IELGLWVIVDVSYEW--PKDNI 367 (448)
Q Consensus 291 W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q-~~~g~w~vvDvS~d~--~~~~~ 367 (448)
|-..|-. +++|+.++. ...+.|..+..|.| +++|||..+|+++. .++|..+|.=.|++. ..+.
T Consensus 70 Wd~~~~~----~~vie~id~--------~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~- 135 (197)
T cd08869 70 WDDDLLQ----WKVVETLDE--------DTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL- 135 (197)
T ss_pred cchhhhe----EEEEEEecC--------CcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC-
Confidence 6666644 477777753 23567777777777 59999999999875 678899999999963 2222
Q ss_pred CCcccccCCccceeeeCCCCcceEEEEEeeeecCc
Q 046202 368 SSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDK 402 (448)
Q Consensus 368 ~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~ 402 (448)
.++|...+++|++|++.++|.|+||++-|++.--+
T Consensus 136 g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 136 GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGR 170 (197)
T ss_pred CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence 47999999999999999999999999999987644
No 41
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.46 E-value=1.2e-06 Score=96.53 Aligned_cols=125 Identities=18% Similarity=0.309 Sum_probs=101.3
Q ss_pred eeecceeeEEechhhHHHHhcChh----hhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhh--ccCccccCcee
Q 046202 266 ESSKYSGMVTMNGMQLVEMLLDSD----KWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMH--ILSPLVSPREY 339 (448)
Q Consensus 266 easR~~~~V~~~~~~lve~lmD~~----~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~--v~SPlvp~Re~ 339 (448)
-+=|+.|||...+.+|.+.+|+.+ +|=..| ..++.|+.|. |...++|.-++ .+...+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~----~~~~vIE~ID--------~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSF----QYGSLVEEVD--------GHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcc----cceEEEEEec--------CCeEEEEEEeccccccCccCccee
Confidence 466888999999999999999777 666655 4558888764 45567776664 45567777999
Q ss_pred EEEEeeeeecCCeEEEEEEecCCCC--CCCCCcccccCCccceeeeCC--C--CcceEEEEEeeeecCc
Q 046202 340 YFLRHCQQIELGLWVIVDVSYEWPK--DNISSSHCWRLPSGFMIQDMT--N--GCSNVTWLEHVEVDDK 402 (448)
Q Consensus 340 ~flRyc~q~~~g~w~vvDvS~d~~~--~~~~~~~~~r~PSGclIq~~~--n--g~skVtwveH~e~d~~ 402 (448)
+++||-+..+||+++|+=+|+..-. +...++|.+..|+||+|.+++ | -.|.|+|+-|++..-|
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW 363 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGW 363 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcc
Confidence 9999999999999999999998643 222389999999999999974 3 3799999999998877
No 42
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.40 E-value=1.7e-07 Score=92.13 Aligned_cols=51 Identities=25% Similarity=0.610 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 23 HTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 23 ~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
|...-...|..+|..++||++.++.+||+.+||+..||-.||+|||.|+|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 556668899999999999999999999999999999999999999999884
No 43
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.34 E-value=7.6e-06 Score=78.61 Aligned_cols=195 Identities=14% Similarity=0.195 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHH-HH
Q 046202 206 LMMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLV-EM 284 (448)
Q Consensus 206 ~~~~lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lv-e~ 284 (448)
-....+.+||+++.++... +.-|.-..+. +.|-- .|.+........| |.-++|...+..|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~-~~~W~l~~~~-~~gi~---------V~s~~~~~~~~~f-----k~~~~v~~~~~~l~~~l 68 (209)
T cd08906 5 EYVRQGKEALAVVEQILAQ-EENWKFEKNN-DNGDT---------VYTLEVPFHGKTF-----ILKAFMQCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEec-CCCCE---------EEEeccCCCCcEE-----EEEEEEcCCHHHHHHHH
Confidence 3566789999999999865 3479742111 00211 2322221111233 56677788899995 68
Q ss_pred hcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCc--cccCceeEEEEeeeeecCCeEEEEEEecCC
Q 046202 285 LLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSP--LVSPREYYFLRHCQQIELGLWVIVDVSYEW 362 (448)
Q Consensus 285 lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SP--lvp~Re~~flRyc~q~~~g~w~vvDvS~d~ 362 (448)
|.|.+...+=.+.+ ..++.|+-++. .--+.| ..-.|.+ .|..|||..+|+.++.++| .+++..|++.
T Consensus 69 l~D~~~~~~W~~~~-~~~~vi~~~~~--------~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~ 137 (209)
T cd08906 69 ILQPEKMVLWNKTV-SACQVLQRVDD--------NTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH 137 (209)
T ss_pred HhChhhccccCccc-hhhhheeeccC--------CcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec
Confidence 88886655555555 33465665543 123456 5555554 6899999999999998888 5777788764
Q ss_pred C--CCCCCCcccccCCccceeeeC--CCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHHH
Q 046202 363 P--KDNISSSHCWRLPSGFMIQDM--TNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTC 432 (448)
Q Consensus 363 ~--~~~~~~~~~~r~PSGclIq~~--~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~c 432 (448)
- .+...++|.+..++|++|+.. .+|.|+|||+-|++..-+ ++ +.+++..++=..-.-+..|.++.
T Consensus 138 ~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~--lP---~~lvN~~~~~~~~~~~~~LR~~~ 206 (209)
T cd08906 138 SHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR--LP---RYLIHQSLAATMFEFASHLRQRI 206 (209)
T ss_pred CCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC--CC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 122237999999999999985 677999999999987755 32 24555444433333444444443
No 44
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.25 E-value=1.5e-05 Score=76.28 Aligned_cols=178 Identities=20% Similarity=0.243 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCC-CCCCeeeeecceeeEEechhhHHHHh
Q 046202 207 MMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFK-TSSARVESSKYSGMVTMNGMQLVEML 285 (448)
Q Consensus 207 ~~~lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~-~~~~~~easR~~~~V~~~~~~lve~l 285 (448)
...+|.++-+++++--+.++-.|-.-... +..+. ..+ ..-|.+---|.-|+|.-.+..|++.+
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~~~Wkl~k~~---~~~~v-------------~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v 66 (202)
T cd08902 3 IASKTTKLQNTLIQYHSILEEEWRVAKKS---KDVTV-------------WRKPSEEFGGYLYKAQGVVEDVYNRIVDHI 66 (202)
T ss_pred HHHHHHHHHHHHHHhccccccCcEEEEeC---CCEEE-------------EEecCCcCCCceEEEEEEecCCHHHHHHHH
Confidence 35677788888999777799999663322 11121 111 11233344566788888899999999
Q ss_pred cC---hhhhhhhcccccccceEeEEecCCCCCCCCCceeee-hhhhhccCccccCceeEEEEeeeeecCCeEEEEEEecC
Q 046202 286 LD---SDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLM-HEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYE 361 (448)
Q Consensus 286 mD---~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm-~~e~~v~SPlvp~Re~~flRyc~q~~~g~w~vvDvS~d 361 (448)
-+ ..+|=+.+ ..++.|+-|..+ + .++ |.=.-.+-++|-+|||.-+||+++-++|. +.+=||++
T Consensus 67 ~~~~~r~~Wd~~v----~~~~Iie~Id~d-------t-~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~ 133 (202)
T cd08902 67 RPGPYRLDWDSLM----TSMDIIEEFEEN-------C-CVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIE 133 (202)
T ss_pred hcccchhcccchh----hheeHhhhhcCC-------c-EEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeec
Confidence 88 44887765 444777766642 3 233 54455677799999999999999999998 77789988
Q ss_pred CCCCCCCCcccccCCccceeeeCCCC--cceEEEEEeeeecCcCccchhhccccccccc
Q 046202 362 WPKDNISSSHCWRLPSGFMIQDMTNG--CSNVTWLEHVEVDDKTQTHRLYRDLICNNCA 418 (448)
Q Consensus 362 ~~~~~~~~~~~~r~PSGclIq~~~ng--~skVtwveH~e~d~~~~v~~l~r~l~~sg~a 418 (448)
....-+.++|....|+||++.+.+|| .|+.||+-+++..-+ |=+.+++..++
T Consensus 134 ~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~-----LPqsiIdq~~~ 187 (202)
T cd08902 134 YEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM-----LPQSAVDTAMA 187 (202)
T ss_pred CCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC-----ccHHHHHHHhh
Confidence 65433348999999999999999988 677889998777644 33455544443
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.23 E-value=1.6e-05 Score=76.45 Aligned_cols=164 Identities=16% Similarity=0.298 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhhccCCCCcccCC-CCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHHHHhc-Ch
Q 046202 211 ATNAMDELIRLMRINEPLWIKPP-SSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLL-DS 288 (448)
Q Consensus 211 A~~am~El~~la~~~~plWi~~~-~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lve~lm-D~ 288 (448)
-+..+++|++.|..----|+.-. .. +-|. .|.| ...|...-.-|..+.+...+..++..|+ |.
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~---~~el----~~~k--------~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~ 75 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSE---QAEL----SYKK--------VSEGPPLRLWRTTIEVPAAPEEILKRLLKEQ 75 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCC---cEEE----EEec--------cCCCCCcEEEEEEEEeCCCHHHHHHHHHhhH
Confidence 34778888888876666676632 11 1122 1222 2234445566777777778888885554 46
Q ss_pred hhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeee-eecCCeEEEEEEecCCCCCCC
Q 046202 289 DKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQ-QIELGLWVIVDVSYEWPKDNI 367 (448)
Q Consensus 289 ~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~-q~~~g~w~vvDvS~d~~~~~~ 367 (448)
.+|-..+-.. ++|+-|+... .+.|-.+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.-.--.
T Consensus 76 ~~Wd~~~~e~----~vIe~ld~~~--------~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~ 142 (204)
T cd08908 76 HLWDVDLLDS----KVIEILDSQT--------EIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDRAPV 142 (204)
T ss_pred HHHHHHhhhe----EeeEecCCCc--------eEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCc
Confidence 7788887554 8888776321 467888888988 7999999997765 478999999999988532111
Q ss_pred CCcccccCCccceeeeCCCCcceEEEEEeeeecCc
Q 046202 368 SSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDK 402 (448)
Q Consensus 368 ~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~ 402 (448)
..+|.+.+-+|++|++.++|.|+||.+-|++---.
T Consensus 143 ~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 143 AGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGH 177 (204)
T ss_pred CceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCC
Confidence 26889999999999999999999999999986543
No 46
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.99 E-value=8e-05 Score=69.54 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=103.3
Q ss_pred eecceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeee
Q 046202 267 SSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQ 346 (448)
Q Consensus 267 asR~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~ 346 (448)
.-|.+++|..++.++.+++.|.+.|.+-=|.+ ..++ ||..... + -.++|..+..+-| |..|||.+.+...
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~-~~~~---vie~~~~----~-~~i~~~~~~~p~p-vs~Rdfv~~~~~~ 111 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPNC-KESR---VLKRTDD----N-ERSVYTVIDLPWP-VKDRDMVLRSTTE 111 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhc-ceEE---EeecCCC----C-cEEEEEEEecccc-cCCceEEEEEEEE
Confidence 55888899999999999999999887766665 3444 4443221 1 2445555555544 7899999876544
Q ss_pred eec-CCeEEEEEEecCCCCC-CCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhH
Q 046202 347 QIE-LGLWVIVDVSYEWPKD-NISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERW 424 (448)
Q Consensus 347 q~~-~g~w~vvDvS~d~~~~-~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW 424 (448)
... +|..+|.=.|.+...+ ...++|.+.+.+|+.|++.++|.|+||++-|++..-+ ++ ..+++.-+.-+..++
T Consensus 112 ~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP---~~lv~~~~~~~~~~~ 186 (195)
T cd08876 112 QDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IP---GWLANAFAKDAPYNT 186 (195)
T ss_pred EcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CC---HHHHHHHHHHHHHHH
Confidence 333 6777776666654212 1136789999999999999999999999999888644 33 233333333345677
Q ss_pred HHHHHHHH
Q 046202 425 VVTLQRTC 432 (448)
Q Consensus 425 ~~~l~R~c 432 (448)
+..|.++|
T Consensus 187 l~~l~~~~ 194 (195)
T cd08876 187 LENLRKQL 194 (195)
T ss_pred HHHHHHhh
Confidence 88877765
No 47
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.98 E-value=5e-05 Score=72.80 Aligned_cols=149 Identities=17% Similarity=0.264 Sum_probs=110.3
Q ss_pred eeecceeeEE-echhhHHHHhcChh---hhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEE
Q 046202 266 ESSKYSGMVT-MNGMQLVEMLLDSD---KWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYF 341 (448)
Q Consensus 266 easR~~~~V~-~~~~~lve~lmD~~---~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~f 341 (448)
-.=|..+++. ..+..|+++|+|.+ +|...+-. .++.++. + -.++|-.+..|-| |..||+.+
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~------~~~~~~~-------~-~~i~y~~~k~PwP-vs~RD~V~ 113 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE------LYEKECD-------G-ETVIYWEVKYPFP-LSNRDYVY 113 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh------heeecCC-------C-CEEEEEEEEcCCC-CCCceEEE
Confidence 3678788887 79999999999965 56665433 2333322 2 2578889999999 99999999
Q ss_pred EEeeeee-cCC--eEEEEEEecCCCC--CCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccc
Q 046202 342 LRHCQQI-ELG--LWVIVDVSYEWPK--DNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNN 416 (448)
Q Consensus 342 lRyc~q~-~~g--~w~vvDvS~d~~~--~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg 416 (448)
+|-.... .+| .|+|+.-|++... ....++|....-+|.+|++..++.|+||++-|++-.-+ ++. -+++..
T Consensus 114 ~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~--IP~---wlvN~~ 188 (207)
T cd08910 114 IRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM--IPS---WLINWA 188 (207)
T ss_pred EEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc--chH---HHHHHH
Confidence 9754433 344 6898888876431 11137999999999999999888899999999886533 432 467777
Q ss_pred cccchhhHHHHHHHHHHH
Q 046202 417 CAYGAERWVVTLQRTCER 434 (448)
Q Consensus 417 ~afGA~RW~~~l~R~cer 434 (448)
...++-.|+..|+..|..
T Consensus 189 ~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 189 AKNGVPNFLKDMQKACQN 206 (207)
T ss_pred HHHhhHHHHHHHHHHHhc
Confidence 788889999999999864
No 48
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.98 E-value=4.6e-05 Score=73.28 Aligned_cols=122 Identities=14% Similarity=0.077 Sum_probs=88.1
Q ss_pred CCCeeeeecceeeEEechhhHHHHhcChh---hhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCcc-ccC
Q 046202 261 SSARVESSKYSGMVTMNGMQLVEMLLDSD---KWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPL-VSP 336 (448)
Q Consensus 261 ~~~~~easR~~~~V~~~~~~lve~lmD~~---~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPl-vp~ 336 (448)
.+|+. -++|...+..|++.|.|.. +|-.++-.. +.++-++. ...++|.....|-|+ ++.
T Consensus 45 ~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~----~vl~~~~~--------d~~i~y~~~~~Pwp~~~~~ 107 (205)
T cd08874 45 HGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDTMIKTA----RIHKTFTE--------DICLVYLVHETPLCLLKQP 107 (205)
T ss_pred ceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHHhhhhe----eeeeecCC--------CeEEEEEEecCCCCCCCCC
Confidence 46664 4477889999999999975 555555333 55554432 335667666555544 399
Q ss_pred ceeEEEEeeeeecCCeEEEEEEecCC-CCCCC--CCcccccCCccceeeeC---CCCcceEEEEEeeeec
Q 046202 337 REYYFLRHCQQIELGLWVIVDVSYEW-PKDNI--SSSHCWRLPSGFMIQDM---TNGCSNVTWLEHVEVD 400 (448)
Q Consensus 337 Re~~flRyc~q~~~g~w~vvDvS~d~-~~~~~--~~~~~~r~PSGclIq~~---~ng~skVtwveH~e~d 400 (448)
|||..+|-....+++.. |.=.|++. ..+.. .++|.+.+++|++|++. ++|.|+||.+-|++--
T Consensus 108 RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 108 RDFCCLQVEAKEGELSV-VACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred CeEEEEEEEEECCCcEE-EEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 99999996555555544 66678776 33322 37999999999999999 9999999999999876
No 49
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.91 E-value=0.00011 Score=70.30 Aligned_cols=196 Identities=16% Similarity=0.160 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHHHHhc
Q 046202 207 MMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEMLL 286 (448)
Q Consensus 207 ~~~lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lve~lm 286 (448)
+++=+...|.|+.+..+. +.-|....+. .| ..=|.|..+ +-..-+-|.-|+|..+...++++|.
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~--~~-----i~v~~r~~~--------~~~~~~~k~e~~i~~~~~~~~~vl~ 66 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKES--EG-----IRVYYKFEP--------DGSLLSLRMEGEIDGPLFNLLALLN 66 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccC--CC-----eEEEEEeCC--------CCCEEEEEEEEEecCChhHeEEEEe
Confidence 344455889999888776 5569775432 01 112333221 2224677888999999999999999
Q ss_pred ChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEE-Eeeeee-cCCeEEEEEEecCCCC
Q 046202 287 DSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFL-RHCQQI-ELGLWVIVDVSYEWPK 364 (448)
Q Consensus 287 D~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~fl-Ryc~q~-~~g~w~vvDvS~d~~~ 364 (448)
|.+...+-+|.. ..+..++.++-. -++.|..+-.|-| +..||+.+. +.|.++ ++|..+|+=.|++.-.
T Consensus 67 d~~~~~~W~p~~-~~~~~l~~~~~~--------~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~ 136 (215)
T cd08877 67 EVELYKTWVPFC-IRSKKVKQLGRA--------DKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDP 136 (215)
T ss_pred hhhhHhhhcccc-eeeEEEeecCCc--------eEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCc
Confidence 998887777775 455666655432 2567767777777 888999975 557777 8999999999998432
Q ss_pred -----------CCC-CCcccccCCccceeeeCCCCcceEEEEEeeeecCcCc-cchhhccccccccccchhhHHHHHHHH
Q 046202 365 -----------DNI-SSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQ-THRLYRDLICNNCAYGAERWVVTLQRT 431 (448)
Q Consensus 365 -----------~~~-~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~-v~~l~r~l~~sg~afGA~RW~~~l~R~ 431 (448)
... ..+|.....+|++|+++++|-++|+++-|++ .+.. +|.= |++...--.+..-+..|++.
T Consensus 137 ~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~D--P~g~~IP~~---liN~~~k~~~~~~~~~l~k~ 211 (215)
T cd08877 137 EFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVD--PKMSLVPKS---LLNFVARKFAGLLFEKIQKA 211 (215)
T ss_pred ccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcC--CCcccCCHH---HHHHHHHHHHHHHHHHHHHH
Confidence 122 3678889999999999999999999999865 4434 5532 23222222344556666666
Q ss_pred HH
Q 046202 432 CE 433 (448)
Q Consensus 432 ce 433 (448)
|+
T Consensus 212 ~~ 213 (215)
T cd08877 212 AK 213 (215)
T ss_pred Hh
Confidence 54
No 50
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.89 E-value=2.2e-06 Score=61.71 Aligned_cols=34 Identities=38% Similarity=0.725 Sum_probs=29.0
Q ss_pred cCCCCCHHHHHHHHHHhCCCcceeeeeccccchH
Q 046202 37 DCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQ 70 (448)
Q Consensus 37 ~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK 70 (448)
.+|||+..++..||+++||+.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999998864
No 51
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.89 E-value=0.0003 Score=67.22 Aligned_cols=152 Identities=17% Similarity=0.190 Sum_probs=116.4
Q ss_pred eeecceeeE-EechhhHHHHhcChh---hhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEE
Q 046202 266 ESSKYSGMV-TMNGMQLVEMLLDSD---KWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYF 341 (448)
Q Consensus 266 easR~~~~V-~~~~~~lve~lmD~~---~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~f 341 (448)
-.=|..+++ .+.+..|.+.|+|.+ +|-..|-. +++|+..+. .| ..++|-.+..|-|+ -.||+.+
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~----~~~le~~~~------~~-~~i~y~~~~~P~P~-s~RD~V~ 117 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIE----HETLEEDEK------SG-TEIVRWVKKFPFPL-SDREYVI 117 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheee----EEEEEecCC------CC-cEEEEEEEECCCcC-CCceEEE
Confidence 456777777 569999999999964 56665533 366654321 02 37899999999988 8999999
Q ss_pred EEeeeeecCCeEEEEEEecCCCC-CCCCCcccccCCccceeeeC--CCCcceEEEEEeeeecCcCccchhhccccccccc
Q 046202 342 LRHCQQIELGLWVIVDVSYEWPK-DNISSSHCWRLPSGFMIQDM--TNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCA 418 (448)
Q Consensus 342 lRyc~q~~~g~w~vvDvS~d~~~-~~~~~~~~~r~PSGclIq~~--~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~a 418 (448)
.|-..+..+|..+|+=-|++... +...++|.+..=||++|++. .+|.++++++-|.+-. . .++ .-|++....
T Consensus 118 ~r~~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~-G-~IP---~wlvN~~~~ 192 (209)
T cd08870 118 ARRLWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPD-G-GIP---RELAKLAVK 192 (209)
T ss_pred EEEEEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCC-C-CCC---HHHHHHHHH
Confidence 98777777899999888887521 11137889999999999999 7889999999888643 2 344 367888899
Q ss_pred cchhhHHHHHHHHHHH
Q 046202 419 YGAERWVVTLQRTCER 434 (448)
Q Consensus 419 fGA~RW~~~l~R~cer 434 (448)
.|+-.++..|.+.|..
T Consensus 193 ~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 193 RGMPGFLKKLENALRK 208 (209)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 9999999999999863
No 52
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.86 E-value=9.4e-06 Score=79.60 Aligned_cols=58 Identities=24% Similarity=0.513 Sum_probs=52.5
Q ss_pred CCCCCCCCHHHHHHHHHhHh---cCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 17 KITCHRHTTHQIQTLEAFFK---DCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~---~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
+|+|..|+..-..+|...|. .+|||+...+++||+++|++..||..||.|+|-++||.
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKN 249 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhh
Confidence 44555799999999999995 58999999999999999999999999999999999884
No 53
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.72 E-value=0.00015 Score=69.58 Aligned_cols=165 Identities=16% Similarity=0.226 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeE-EechhhHHHHhcChh
Q 046202 211 ATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMV-TMNGMQLVEMLLDSD 289 (448)
Q Consensus 211 A~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V-~~~~~~lve~lmD~~ 289 (448)
-+..+.+|++-+....=-|....+. .+-++ .|++ - +.|...--=|.+.-| ...+.-|-++|.|+.
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~--~~vev----~~kk-~-------~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~ 76 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGP--DNTEL----ACKK-V-------GDGHPLRLWKVSTEVEAPPSVVLQRVLRERH 76 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCC--CCcEE----EEEe-C-------CCCCceEEEEEEEEecCCCHHHHHHHhhchh
Confidence 3478889999998888889874321 12333 1111 1 111111111222222 234555669999999
Q ss_pred hhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeee-eecCCeEEEEEEecCCCCCCCC
Q 046202 290 KWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQ-QIELGLWVIVDVSYEWPKDNIS 368 (448)
Q Consensus 290 ~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~-q~~~g~w~vvDvS~d~~~~~~~ 368 (448)
.|=..+=. ..+|+.|.... .+-|=-+.-| +.+|+|+|.+||.=+ .+..|.-+|+.+|++....-+.
T Consensus 77 ~WD~~m~e----~~~Ie~Ld~n~--------dI~yY~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~ 143 (205)
T cd08907 77 LWDEDLLH----SQVIEALENNT--------EVYHYVTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLE 143 (205)
T ss_pred hhhHHHHh----hhhheeecCCC--------EEEEEEecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCC
Confidence 99988744 48888886321 1222112223 568999999999864 4677889999999986533222
Q ss_pred -CcccccCCccceeeeCCCCcceEEEEEeeeecCc
Q 046202 369 -SSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDK 402 (448)
Q Consensus 369 -~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~ 402 (448)
-+|+--+-||+||++.+.|.|+||-|-|++..-+
T Consensus 144 ~gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 144 AGVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred CCeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 3889999999999999999999999999987644
No 54
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.60 E-value=3.8e-05 Score=82.16 Aligned_cols=62 Identities=26% Similarity=0.371 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHh
Q 046202 11 NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72 (448)
Q Consensus 11 ~~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 72 (448)
+.....||.|.+||..|...|..+|+++++|+....+.|+.+|+|....|..||-|-|.|.+
T Consensus 415 d~~~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 415 DKMLQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRSL 476 (558)
T ss_pred cccccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhcc
Confidence 33445677899999999999999999999999999999999999999999999999988863
No 55
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.55 E-value=0.00073 Score=64.70 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=109.4
Q ss_pred eecceeeE-EechhhHHHHhcChh---hhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEE
Q 046202 267 SSKYSGMV-TMNGMQLVEMLLDSD---KWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFL 342 (448)
Q Consensus 267 asR~~~~V-~~~~~~lve~lmD~~---~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~fl 342 (448)
.=|..+++ ...+..+++.|+|.+ +|...+-. ++.|+.+.. . ...++|..+..|-|+ -.||+.+.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~----~~~le~~~~------~-~~~i~y~~~~~P~P~-s~RD~V~~ 113 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVE----LEVVDEDPE------T-GSEIIYWEMQWPKPF-ANRDYVYV 113 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhhee----EEEEEccCC------C-CCEEEEEEEECCCCC-CCccEEEE
Confidence 46665644 789999999999985 45555533 255554321 1 236789999999996 89999998
Q ss_pred Eeeeeec-CCeEEEEEEecCC-CCC-CCCCcccccCCccceeeeCC---CCcceEEEEEeeeecCcCccchhhccccccc
Q 046202 343 RHCQQIE-LGLWVIVDVSYEW-PKD-NISSSHCWRLPSGFMIQDMT---NGCSNVTWLEHVEVDDKTQTHRLYRDLICNN 416 (448)
Q Consensus 343 Ryc~q~~-~g~w~vvDvS~d~-~~~-~~~~~~~~r~PSGclIq~~~---ng~skVtwveH~e~d~~~~v~~l~r~l~~sg 416 (448)
|-..+.. +|.++|+--|++. ..+ ...++|.....||++|++.. ++.++|+++-|. |..-.++. -+++.-
T Consensus 114 r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~---~lvN~~ 188 (207)
T cd08911 114 RRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPS---YITSWV 188 (207)
T ss_pred EEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCH---HHHHHH
Confidence 8776665 5788898888884 222 12379999999999999983 567999988885 55523543 466667
Q ss_pred cccchhhHHHHHHHHHHH
Q 046202 417 CAYGAERWVVTLQRTCER 434 (448)
Q Consensus 417 ~afGA~RW~~~l~R~cer 434 (448)
...|+-.|+..|+.-|..
T Consensus 189 ~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 189 AMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHhhccHHHHHHHHHHhc
Confidence 777888999999998864
No 56
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.40 E-value=0.00013 Score=69.58 Aligned_cols=65 Identities=34% Similarity=0.650 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
...+.++.++.++..|+..++..|..+++|+...+..|+..+|++++.+++||||+|.+.++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 149 SNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 34566778889999999999999999999999999999999999999999999999999988543
No 57
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.35 E-value=0.0014 Score=64.41 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=86.5
Q ss_pred CCeeeeecceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEE
Q 046202 262 SARVESSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYF 341 (448)
Q Consensus 262 ~~~~easR~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~f 341 (448)
.|++|+. |...+.+|++.|.|.+...+=.+.+ ...+.|+-++. ...++|..+..|. -+.+|||.+
T Consensus 78 ~fk~e~~-----vd~s~~~v~dlL~D~~~R~~WD~~~-~e~evI~~id~--------d~~iyy~~~p~Pw-Pvk~RDfV~ 142 (235)
T cd08873 78 SFCVELK-----VQTCASDAFDLLSDPFKRPEWDPHG-RSCEEVKRVGE--------DDGIYHTTMPSLT-SEKPNDFVL 142 (235)
T ss_pred EEEEEEE-----ecCCHHHHHHHHhCcchhhhhhhcc-cEEEEEEEeCC--------CcEEEEEEcCCCC-CCCCceEEE
Confidence 4555654 8889999999999986544333333 22366665552 2245665555554 488999999
Q ss_pred EEeeeeecCC--eEEEEEEecC--CCCCCCCCcccccCCccceeeeCCCCcceEEEEEeee
Q 046202 342 LRHCQQIELG--LWVIVDVSYE--WPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVE 398 (448)
Q Consensus 342 lRyc~q~~~g--~w~vvDvS~d--~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e 398 (448)
+|+-++..++ ..+|.=.|+. ...+.+.++|.+.+=+|++|++.+||.|+||.+-|++
T Consensus 143 ~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 143 LVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred EEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 9999984433 4777666665 3333334899999999999999999999999999985
No 58
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.33 E-value=0.0029 Score=62.06 Aligned_cols=193 Identities=13% Similarity=0.213 Sum_probs=122.2
Q ss_pred HHHHHHHHhhcc--CCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEE-echhhHHHHhcChh
Q 046202 213 NAMDELIRLMRI--NEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVT-MNGMQLVEMLLDSD 289 (448)
Q Consensus 213 ~am~El~~la~~--~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~-~~~~~lve~lmD~~ 289 (448)
.-.+|.+++|+. ++.-|--..+. .| .++|.+... ..|+....=|+.++|. ..+..+.+.|.|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~W~l~~~~--~g---------ikVy~r~~~--~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~ 76 (235)
T cd08872 10 EKVQEQLTYALEDVGADGWQLFAEE--GE---------MKVYRREVE--EDGVVLDPLKATHAVKGVTGHEVCHYFFDPD 76 (235)
T ss_pred HHHHHHHHHHHccCCCCCCEEEEeC--Cc---------eEEEEEECC--CCCceeeeEEEEEEECCCCHHHHHHHHhChh
Confidence 556788888874 55568553321 01 123433221 1144445678888888 88999999999986
Q ss_pred hhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeecC-------CeEEEEEEecCC
Q 046202 290 KWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIEL-------GLWVIVDVSYEW 362 (448)
Q Consensus 290 ~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~~-------g~w~vvDvS~d~ 362 (448)
.-.+=-..+ ..++.|+-++. ...+.|..+..|-| +..|||.|+|+-++.++ +.|+|+..|++.
T Consensus 77 ~r~~Wd~~~-~~~~vie~l~~--------~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h 146 (235)
T cd08872 77 VRMDWETTL-ENFHVVETLSQ--------DTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH 146 (235)
T ss_pred hHHHHHhhh-heeEEEEecCC--------CCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccC
Confidence 444333333 33355655553 22467777778888 69999999999998776 789999999875
Q ss_pred CC--CCCCCccccc---CCccceeee------C--CCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHH
Q 046202 363 PK--DNISSSHCWR---LPSGFMIQD------M--TNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQ 429 (448)
Q Consensus 363 ~~--~~~~~~~~~r---~PSGclIq~------~--~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~ 429 (448)
-. +...++|... +=.|.+|.+ + .||.|+||++-|++---+ ++ ..+++.....++-++|..|-
T Consensus 147 ~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~--iP---~wvvn~~~k~~~P~~l~~~~ 221 (235)
T cd08872 147 DSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGW--AP---ASVLRAVYKREYPKFLKRFT 221 (235)
T ss_pred ccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCC--cc---HHHHHHHHHhhchHHHHHHH
Confidence 32 1112455543 112333322 1 588999999999986655 22 25566666677778887776
Q ss_pred HHHH
Q 046202 430 RTCE 433 (448)
Q Consensus 430 R~ce 433 (448)
-++.
T Consensus 222 ~~~~ 225 (235)
T cd08872 222 SYVQ 225 (235)
T ss_pred HHHH
Confidence 6543
No 59
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.90 E-value=0.0095 Score=58.78 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=79.9
Q ss_pred eeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCc--cccCceeEEEEeeeee
Q 046202 271 SGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSP--LVSPREYYFLRHCQQI 348 (448)
Q Consensus 271 ~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SP--lvp~Re~~flRyc~q~ 348 (448)
-++|...+..|++.|.|.+...+=.+.+ ..++.|+-++.. . . +|... -+.+ -|..|||..++.-.+.
T Consensus 86 e~~vd~s~e~v~~lL~D~~~r~~Wd~~~-~e~~vIe~id~~-------~-~-vY~v~-~~p~~~pvs~RDfV~~~s~~~~ 154 (240)
T cd08913 86 EMVVHVDAAQAFLLLSDLRRRPEWDKHY-RSCELVQQVDED-------D-A-IYHVT-SPSLSGHGKPQDFVILASRRKP 154 (240)
T ss_pred EEEEcCCHHHHHHHHhChhhhhhhHhhc-cEEEEEEecCCC-------c-E-EEEEe-cCCCCCCCCCCeEEEEEEEEec
Confidence 3688999999999999987655555444 233656655531 1 1 22221 1122 5889999999888665
Q ss_pred cC-C-eEEEEEEecC--CCCCCCCCcccccCCccceeeeCCCCcceEEEEEeee
Q 046202 349 EL-G-LWVIVDVSYE--WPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVE 398 (448)
Q Consensus 349 ~~-g-~w~vvDvS~d--~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e 398 (448)
.+ | .++|+=.|+. ..-+...++|.+.+..|++|++.++|.|+||++-|++
T Consensus 155 ~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d 208 (240)
T cd08913 155 CDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT 208 (240)
T ss_pred cCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC
Confidence 44 4 4555554444 3222233899999999999999999999999999987
No 60
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.82 E-value=0.0076 Score=59.36 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=85.6
Q ss_pred eecceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccC-ccccCceeEEEEee
Q 046202 267 SSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILS-PLVSPREYYFLRHC 345 (448)
Q Consensus 267 asR~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~S-Plvp~Re~~flRyc 345 (448)
+-|....|...+..|++.|.|.+...+=.+.+ ..++.|+-++... . +|...-.|- | +..|||.+++--
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~-~e~~vI~qld~~~--------~-vY~~~~pPw~P-vk~RD~V~~~s~ 147 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHF-LSCEVIDWVSEDD--------Q-IYHITCPIVNN-DKPKDLVVLVSR 147 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHhh-ceEEEEEEeCCCc--------C-EEEEecCCCCC-CCCceEEEEEEE
Confidence 34444578899999999999986544433333 2236666655321 1 354333332 3 489999998777
Q ss_pred eeec-CCe-EEEEEEecCC-CCCC-CCCcccccCCccceeeeCCCCcceEEEEEeeee
Q 046202 346 QQIE-LGL-WVIVDVSYEW-PKDN-ISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEV 399 (448)
Q Consensus 346 ~q~~-~g~-w~vvDvS~d~-~~~~-~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~ 399 (448)
.+.. +|. .+|.=-|+.. ..+. +.++|.+.+=+|++|++.++|.|+||.+-|++=
T Consensus 148 ~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 148 RKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred EecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcCC
Confidence 6666 885 8888888876 3322 237888888899999999999999999999964
No 61
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=95.88 E-value=0.0025 Score=74.31 Aligned_cols=61 Identities=21% Similarity=0.414 Sum_probs=56.5
Q ss_pred CCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 16 GKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 16 ~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
++..|++++..|+..+...|....+|...+.+.|...++++++.|++||||-|.|.|+...
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 4667889999999999999999999999999999999999999999999999999998644
No 62
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=95.47 E-value=0.011 Score=60.65 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=50.5
Q ss_pred CCCCCCCCCHHHHHHHHHhHh---cCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 16 GKITCHRHTTHQIQTLEAFFK---DCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 16 ~Kr~rtr~T~eQl~~LE~~F~---~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
+++++..+.......|+.... ..|||+..++..|++++||+..||..||-|.|-|..+-..
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~ 302 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMI 302 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchH
Confidence 445555788998888887743 3689999999999999999999999999999988776433
No 63
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=94.69 E-value=0.0072 Score=46.70 Aligned_cols=42 Identities=21% Similarity=0.481 Sum_probs=31.4
Q ss_pred HHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccc
Q 046202 27 QIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKR 68 (448)
Q Consensus 27 Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 68 (448)
.++.|++.|...+++.......|..+.+|+..||+.||-.|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 467799999999999999999999999999999999996554
No 64
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=92.23 E-value=0.5 Score=42.47 Aligned_cols=87 Identities=20% Similarity=0.313 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHh-CCCcceeeeeccccchHHhHHhHHhhhHHHHHhhHHHHHhHHHHHH
Q 046202 21 HRHTTHQIQTLEAFFKDCPHPDENQRRQLSKEL-GLDLKQIKFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIRE 99 (448)
Q Consensus 21 tr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~L-gLs~rQVkvWFQNRRaK~Kr~~~r~e~~~L~~ene~L~~en~~l~~ 99 (448)
.+||.+++-.+- -.+|=+.| |++...|-.|=|.||+-.-+-........--.+...|..++..+..
T Consensus 22 d~lsDd~LvsmS-------------VReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSMS-------------VRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHhh-------------HHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777766542 12233333 8888889999999998766655555555555666677788777877
Q ss_pred HhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhh
Q 046202 100 ALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSN 142 (448)
Q Consensus 100 a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~ 142 (448)
++ .+|+.||++++.|++-...
T Consensus 89 qv----------------------~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 89 QV----------------------EKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HH----------------------HHHHHHHHHHHHHHHHHHH
Confidence 76 7899999999988875443
No 65
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=91.62 E-value=0.58 Score=41.09 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeecc
Q 046202 21 HRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65 (448)
Q Consensus 21 tr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQ 65 (448)
++||.++....-.....+. ....++|+++|+++.++..|.+
T Consensus 11 r~ys~EfK~~aV~~~~~~g----~sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 11 RRRTTQEKIAIVQQSFEPG----MTVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCHHHHHHHHHHHHcCC----CCHHHHHHHHCcCHHHHHHHHH
Confidence 3578877554433333332 2355789999999999999954
No 66
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=91.55 E-value=1.1 Score=40.43 Aligned_cols=138 Identities=12% Similarity=0.105 Sum_probs=75.4
Q ss_pred ceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhh--hccCccccCceeEEEEeeee
Q 046202 270 YSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQM--HILSPLVSPREYYFLRHCQQ 347 (448)
Q Consensus 270 ~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~--~v~SPlvp~Re~~flRyc~q 347 (448)
.+-+|.-.+..+-+++-|..+|-+.||.+ .-+++++.|..| -| +.+ ....+ ..+.-+.=|.+.
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~----~~~~~l~~~~~~--~~------~r~~i~~~~~--g~~~~w~s~~~~- 69 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEY----AEAEVLEEDGDT--VR------FRLTMHPDAN--GTVWSWVSERTL- 69 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccce----EEEEEEEecCCe--EE------EEEEEEeccC--CEEEEEEEEEEe-
Confidence 45667778999999999999999999999 556777754422 11 222 22222 112222224333
Q ss_pred ecCCeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHH
Q 046202 348 IELGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVT 427 (448)
Q Consensus 348 ~~~g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~ 427 (448)
....|-|.=..+... + ...+=-...+++.++| |+|++.-+.+...- . .++-+++....--+-..=+++
T Consensus 70 -~~~~~~i~~~~~~~~---p----~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~ 137 (146)
T cd08860 70 -DPVNRTVRARRVETG---P----FAYMNIRWEYTEVPEG-TRMRWVQDFEMKPG-A--PVDDAAMTDRLNTNTRAQMAR 137 (146)
T ss_pred -cCCCcEEEEEEecCC---C----cceeeeeEEEEECCCC-EEEEEEEEEEECCC-C--ccchHHHHHHHhcccHHHHHH
Confidence 333343321022111 1 1111122336788888 99999998887632 1 222223333333334556778
Q ss_pred HHHHHHH
Q 046202 428 LQRTCER 434 (448)
Q Consensus 428 l~R~cer 434 (448)
|.+.+|+
T Consensus 138 Lk~~aE~ 144 (146)
T cd08860 138 IKKKIEA 144 (146)
T ss_pred HHHHhhh
Confidence 8888776
No 67
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=89.41 E-value=2.1 Score=41.83 Aligned_cols=139 Identities=16% Similarity=0.237 Sum_probs=94.4
Q ss_pred EechhhHHHHhcCh---hhhhhhcccccccceEeEEec-CCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeecC
Q 046202 275 TMNGMQLVEMLLDS---DKWVDLFPTIVSKARTIQVLE-PGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIEL 350 (448)
Q Consensus 275 ~~~~~~lve~lmD~---~~W~~~Fp~iVs~a~t~~vi~-~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~~ 350 (448)
.+.|..+-|.|+|. .+|=.+--.+ +||+..+ ||. .++|=+.+.|.|+- .||+-++|---+.++
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~vi~~----e~ie~d~~tg~--------~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~ 129 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDMVIEL----ETIEEDPVTGT--------EVVYWVKKFPFPMS-NRDYVYVRRWWESDE 129 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhhh----eeeeecCCCCc--------eEEEEEEeCCcccC-CccEEEEEEEEecCC
Confidence 45688899999996 5887765555 9999877 443 78999999998875 599999987777776
Q ss_pred CeEEEEEEecCCCCCCC--CCcccccCCccceee-----eCCCCc-ceEEEEEeeeecCcCccchhhccccccccccchh
Q 046202 351 GLWVIVDVSYEWPKDNI--SSSHCWRLPSGFMIQ-----DMTNGC-SNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAE 422 (448)
Q Consensus 351 g~w~vvDvS~d~~~~~~--~~~~~~r~PSGclIq-----~~~ng~-skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~ 422 (448)
..-.||-.|+....--+ -.+|..-.=||.+|+ +-++|. |-++|.. ++. . .|.+.++.=+.-.|+-
T Consensus 130 k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~----~p~-~--~iP~~~v~~~~~~gmp 202 (219)
T KOG2761|consen 130 KDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFH----NPG-G--GIPKWVVKLAVRKGMP 202 (219)
T ss_pred ceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEE----CCC-C--CCcHHHHHHHHHhcCh
Confidence 77888888877431111 146777788999999 556653 3344443 223 1 2455666556666665
Q ss_pred hHHHHHHHHHH
Q 046202 423 RWVVTLQRTCE 433 (448)
Q Consensus 423 RW~~~l~R~ce 433 (448)
.-+..|..-|.
T Consensus 203 ~~vkKm~~a~~ 213 (219)
T KOG2761|consen 203 GAVKKMEKALL 213 (219)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 68
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.38 E-value=1.3 Score=35.93 Aligned_cols=47 Identities=30% Similarity=0.367 Sum_probs=35.9
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhhhh
Q 046202 77 RANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNLLA 145 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~~~ 145 (448)
-.....|+.+++.|+.+|..+.+.. ..|+.||.+|++|.......+.
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~----------------------~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEEN----------------------EELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888665 7899999999999774443333
No 69
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=88.98 E-value=2.4 Score=36.27 Aligned_cols=106 Identities=15% Similarity=0.264 Sum_probs=61.0
Q ss_pred ceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeec
Q 046202 270 YSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIE 349 (448)
Q Consensus 270 ~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~ 349 (448)
.+..|...+.++.+.|.|.+.|.+.+|.+ .-++++..|..| .-...+ +.+- ..+.++.+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~----~~~~~~~~~~~~----~~~~~~--~~~~--~~~~~~~~~~~~~~~~- 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKV----KSVEVLLRDNDG----RPEMVR--IGVG--AYGIKDTYALEYTWDG- 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcce----EEEEEeccCCCC----CEEEEE--EEEe--eeeEEEEEEEEEEEcC-
Confidence 45677788999999999999999999997 445566554322 211111 2221 2244555556665432
Q ss_pred CC--eEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeec
Q 046202 350 LG--LWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVD 400 (448)
Q Consensus 350 ~g--~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d 400 (448)
.. .|-+.+.. + +.... .-.-+.+.++| |+|||.-+++..
T Consensus 73 ~~~i~~~~~~~~-----~---~~~~~---~~~~~~~~~~~-t~vt~~~~~~~~ 113 (140)
T cd07819 73 AGSVSWTLVEGE-----G---NRSQE---GSYTLTPKGDG-TRVTFDLTVELT 113 (140)
T ss_pred CCcEEEEEeccc-----c---eeEEE---EEEEEEECCCC-EEEEEEEEEEec
Confidence 22 22222211 0 11111 12457788885 999999888875
No 70
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=88.44 E-value=2 Score=41.59 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=65.9
Q ss_pred ceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEe-eeeecC-CeEEEEEEecCCCC-C--CCCCcccccCC
Q 046202 302 ARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRH-CQQIEL-GLWVIVDVSYEWPK-D--NISSSHCWRLP 376 (448)
Q Consensus 302 a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRy-c~q~~~-g~w~vvDvS~d~~~-~--~~~~~~~~r~P 376 (448)
++.+++...|. ++...+.|....+|-| +.+|+|..+.. +...+. ..++|+.++++.-. + ...++|.+ -=
T Consensus 77 ~~~l~~~~~~~----~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y~ 150 (208)
T cd08864 77 LEPVEVDGEGD----GVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-YA 150 (208)
T ss_pred eEEeeecCCCc----cceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-EE
Confidence 36666655433 2256778888888888 89999999999 666652 67899999987532 1 11256666 67
Q ss_pred ccceeeeCCC---CcceEEEEE--eeee
Q 046202 377 SGFMIQDMTN---GCSNVTWLE--HVEV 399 (448)
Q Consensus 377 SGclIq~~~n---g~skVtwve--H~e~ 399 (448)
||-.|+-.|. +-..|+|+- |.+-
T Consensus 151 SgE~~~~~p~~~~~~~~vew~maT~sDp 178 (208)
T cd08864 151 SVEKISYLPDADGKSNKVEWIMATRSDA 178 (208)
T ss_pred EEEEEEEcCccCCCcCCEEEEEEEeeCC
Confidence 9989998875 478999998 5553
No 71
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=87.97 E-value=3.9 Score=35.54 Aligned_cols=132 Identities=13% Similarity=0.117 Sum_probs=71.6
Q ss_pred ceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCce-eEEEEeeeee
Q 046202 270 YSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPRE-YYFLRHCQQI 348 (448)
Q Consensus 270 ~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re-~~flRyc~q~ 348 (448)
.+-.|..++..+-++|.|.+.|.+.+|.+ .-.+++..+. ++. . ++.- .|. +.+++|+..
T Consensus 3 ~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v----~~~~~l~~~~----~~~-~-~~~~---------~~~~~~~~~~~~~- 62 (144)
T cd08866 3 ARVRVPAPPETVWAVLTDYDNLAEFIPNL----AESRLLERNG----NRV-V-LEQT---------GKQGILFFKFEAR- 62 (144)
T ss_pred EEEEECCCHHHHHHHHhChhhHHhhCcCc----eEEEEEEcCC----CEE-E-EEEe---------eeEEEEeeeeeEE-
Confidence 45667778999999999999999999999 5566665422 121 1 1110 111 222223221
Q ss_pred cCCeEEEEEEecCCCCCCCCCcccccC----C--ccc-eeeeCCC-CcceEEEEEeeeecCcCccchhhccccccccccc
Q 046202 349 ELGLWVIVDVSYEWPKDNISSSHCWRL----P--SGF-MIQDMTN-GCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYG 420 (448)
Q Consensus 349 ~~g~w~vvDvS~d~~~~~~~~~~~~r~----P--SGc-lIq~~~n-g~skVtwveH~e~d~~~~v~~l~r~l~~sg~afG 420 (448)
++.++.... +.....+++.. + .|. -+++.++ |.+.|+|--|++..-. ++-++++.-+--+
T Consensus 63 -----v~~~~~~~~--~~~~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~-----~p~~l~~~~~~~~ 130 (144)
T cd08866 63 -----VVLELRERE--EFPRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF-----APVFLVEFVLRQD 130 (144)
T ss_pred -----EEEEEEEec--CCCceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCCC-----CCHHHHHHHHHHH
Confidence 112211100 00000111100 0 122 3577887 7899999877776533 3335665555556
Q ss_pred hhhHHHHHHHHHH
Q 046202 421 AERWVVTLQRTCE 433 (448)
Q Consensus 421 A~RW~~~l~R~ce 433 (448)
+.+-+..|.++||
T Consensus 131 ~~~~l~~lr~~ae 143 (144)
T cd08866 131 LPTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 6777777777776
No 72
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=85.74 E-value=5.5 Score=34.16 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=63.0
Q ss_pred eeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeecC
Q 046202 271 SGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIEL 350 (448)
Q Consensus 271 ~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~~ 350 (448)
+-.+...+.++.+.|.|.+.|.+-+|.+. .+++++.| .... +....+ .|+ ..|-....+|..--++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~----~~~~~~~~-------~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~ 71 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCE----SLEKIGPN-------EYEA-TVKLKV-GPV-KGTFKGKVELSDLDPP 71 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchh----hccccCCC-------eEEE-EEEEEE-ccE-EEEEEEEEEEEecCCC
Confidence 44567788999999999999999999984 35555422 1111 111112 232 2232223455443334
Q ss_pred CeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhcccc
Q 046202 351 GLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLI 413 (448)
Q Consensus 351 g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~ 413 (448)
..+++....... . .+ ...=--+-+.+. +|.++|||.-+++..- .+..|..+++
T Consensus 72 ~~~~~~~~~~~~---~-~~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g--~l~~l~~~~~ 124 (144)
T cd05018 72 ESYTITGEGKGG---A-GF---VKGTARVTLEPD-GGGTRLTYTADAQVGG--KLAQLGSRLI 124 (144)
T ss_pred cEEEEEEEEcCC---C-ce---EEEEEEEEEEec-CCcEEEEEEEEEEEcc--ChhhhCHHHH
Confidence 555444322111 0 00 011112336777 5569999999988652 2344444444
No 73
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=85.24 E-value=5.2 Score=34.76 Aligned_cols=135 Identities=12% Similarity=0.139 Sum_probs=75.7
Q ss_pred ceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeec
Q 046202 270 YSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIE 349 (448)
Q Consensus 270 ~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~ 349 (448)
.+..|...+..+.+++-|.+.|.+.+|.+ .-.++++.+. ++ +.+++.+..|. -.|++. .|++-. .
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~----~~~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~-~ 67 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWC----TASRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV-P 67 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCc----cccEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-C
Confidence 34566677888999999999999999999 4455666432 22 22223333332 244443 343321 2
Q ss_pred CCeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHH
Q 046202 350 LGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQ 429 (448)
Q Consensus 350 ~g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~ 429 (448)
+. .+ -=.++++. ...+=--..+++.++|.++|||.-|++..-. -...|..+++. =-+++-+..+.
T Consensus 68 ~~-~i-~~~~~~g~--------~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~-l~~~l~~~~~~----~~~~~~l~~f~ 132 (138)
T cd07813 68 PE-SI-EAELVDGP--------FKHLEGEWRFKPLGENACKVEFDLEFEFKSR-LLEALAGLVFD----EVAKKMVDAFE 132 (138)
T ss_pred CC-EE-EEEecCCC--------hhhceeEEEEEECCCCCEEEEEEEEEEECCH-HHHHHHHHHHH----HHHHHHHHHHH
Confidence 33 32 11223321 0111123457889989999999999988743 12233333332 22566677777
Q ss_pred HHHHH
Q 046202 430 RTCER 434 (448)
Q Consensus 430 R~cer 434 (448)
+.|++
T Consensus 133 ~~~~~ 137 (138)
T cd07813 133 KRAKQ 137 (138)
T ss_pred HHHhh
Confidence 77664
No 74
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=85.05 E-value=0.78 Score=34.77 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=33.8
Q ss_pred CCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeecccc
Q 046202 17 KITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNK 67 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNR 67 (448)
|++|..+|-++...+-..++..+ ....+|+++|++..+|..|..|+
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 45667899999888877787765 57789999999999999998874
No 75
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=84.71 E-value=5.4 Score=39.50 Aligned_cols=37 Identities=32% Similarity=0.298 Sum_probs=23.5
Q ss_pred cccchHHhHHhH--HhhhHHHHHhhHHHHHhHHHHHHHh
Q 046202 65 QNKRTQTKAQNE--RANNSVLRAENERVHCENLAIREAL 101 (448)
Q Consensus 65 QNRRaK~Kr~~~--r~e~~~L~~ene~L~~en~~l~~a~ 101 (448)
|+-|-|.|-... ..+...|-.+|++|+.||+.|+...
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAIN 120 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555444333 3345567788888888888888765
No 76
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=84.15 E-value=8.8 Score=32.49 Aligned_cols=35 Identities=20% Similarity=0.464 Sum_probs=28.5
Q ss_pred eeeEEechhhHHHHhcChhhhhhhcccccccceEeEEec
Q 046202 271 SGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLE 309 (448)
Q Consensus 271 ~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~ 309 (448)
+..|...+.++-+.|.|...|.+-+|.+ ..++.++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~----~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGV----KSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTE----EEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhce----EEEEEcc
Confidence 4467788999999999999999999988 5666666
No 77
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=82.39 E-value=3.9 Score=34.42 Aligned_cols=47 Identities=28% Similarity=0.456 Sum_probs=36.3
Q ss_pred HHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhhh
Q 046202 82 VLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNLL 144 (448)
Q Consensus 82 ~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~~ 144 (448)
.+..+++.|..|..-|+.++ |..++.-+..+||.+|++|+.|+.++-
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qv----------------e~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQV----------------EHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHH----------------HhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777776 556677889999999999999987653
No 78
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=82.10 E-value=10 Score=32.71 Aligned_cols=138 Identities=15% Similarity=0.126 Sum_probs=69.3
Q ss_pred eeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeecC
Q 046202 271 SGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIEL 350 (448)
Q Consensus 271 ~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~~ 350 (448)
+.+|...+..+-++|-|.++|-+.+|. ..+. ++..+. ++.. ++ +....+.--...+...+++. .+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~--~~~~---~~~~~~----~~~~--~~--~~~~~~~g~~~~~~~~~~~~--~~ 68 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT--VHVE---RLELDG----GVER--LR--MWATAFDGSVHTWTSRRVLD--PE 68 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC--ceEE---EEEEcC----CEEE--EE--EEEEcCCCcEEEEEEEEEEc--CC
Confidence 456777899999999999999998886 2233 333221 2221 11 11111111122222222222 22
Q ss_pred CeEE-EEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHH
Q 046202 351 GLWV-IVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQ 429 (448)
Q Consensus 351 g~w~-vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~ 429 (448)
+..+ ...+...+.. ...=.-..+++.++|.++|||.-+++.... ++ +.-+++...+.=...+.|+.|.
T Consensus 69 ~~~i~~~~~~~~~~~--------~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~lk 137 (142)
T cd08861 69 GRRIVFRQEEPPPPV--------ASMSGEWRFEPLGGGGTRVTLRHDFTLGID--SP-EAVPWIRRALDRNSRAELAALR 137 (142)
T ss_pred CCEEEEEEeeCCCCh--------hhheeEEEEEECCCCcEEEEEEEEEEECCC--Cc-hhHHHHHHHHccccHHHHHHHH
Confidence 3321 2222111110 000011235777777899999999998743 22 3333443333334566777777
Q ss_pred HHHHH
Q 046202 430 RTCER 434 (448)
Q Consensus 430 R~cer 434 (448)
.++|+
T Consensus 138 ~~~E~ 142 (142)
T cd08861 138 AAAER 142 (142)
T ss_pred HHhhC
Confidence 77663
No 79
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=81.97 E-value=19 Score=30.27 Aligned_cols=136 Identities=13% Similarity=0.044 Sum_probs=72.2
Q ss_pred eeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeecC
Q 046202 271 SGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIEL 350 (448)
Q Consensus 271 ~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~~ 350 (448)
+..|...+..+-+.|.|.++|.+-.|.+ ..+++++.+.. ..|+.-.+...+ . +.+--...+++.--.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~----~~~~~~~~~~~--~~g~~~~~~~~~---~---g~~~~~~~~v~~~~p~ 71 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGV----VEVEKITDGPV--GVGTRYHQVRKF---L---GRRIELTYEITEYEPG 71 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCc----eEEEEcCCCCC--cCccEEEEEEEe---c---CceEEEEEEEEEecCC
Confidence 4456667888999999999999999988 55677654432 234322221111 0 1111122344432222
Q ss_pred CeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHH
Q 046202 351 GLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQR 430 (448)
Q Consensus 351 g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R 430 (448)
..+.. .. ..+ ..... .=+-+.+.++| +.|+|-.+++. . .+-.++..++...+.=+-++++..|.+
T Consensus 72 ~~~~~-~~-~~~---~~~~~------~~~~~~~~~~~-t~v~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~lk~ 136 (140)
T cd08865 72 RRVVF-RG-SSG---PFPYE------DTYTFEPVGGG-TRVRYTAELEP--G-GFARLLDPLMAPAFRRRARAALENLKA 136 (140)
T ss_pred cEEEE-Ee-cCC---CcceE------EEEEEEEcCCc-eEEEEEEEEcc--c-hhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 22211 11 111 00000 01336677765 99999988876 3 333455556655555556667777766
Q ss_pred HHH
Q 046202 431 TCE 433 (448)
Q Consensus 431 ~ce 433 (448)
.+|
T Consensus 137 ~~e 139 (140)
T cd08865 137 LLE 139 (140)
T ss_pred Hhh
Confidence 655
No 80
>PRK10724 hypothetical protein; Provisional
Probab=81.60 E-value=6.1 Score=36.45 Aligned_cols=137 Identities=12% Similarity=0.166 Sum_probs=80.1
Q ss_pred cceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeee
Q 046202 269 KYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQI 348 (448)
Q Consensus 269 R~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~ 348 (448)
+.+.+|.-.+..+.+.+.|.++|-+.+|... . .+|+.... ++ +.+++.|--.-+ ...|..-++| .
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~-~---s~vl~~~~----~~----~~a~l~v~~~g~-~~~f~srv~~-~- 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGCT-G---SRVLESTP----GQ----MTAAVDVSKAGI-SKTFTTRNQL-T- 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcccC-e---EEEEEecC----CE----EEEEEEEeeCCc-cEEEEEEEEe-c-
Confidence 4467888899999999999999999999983 3 44444322 12 456665543332 3333333333 2
Q ss_pred cCCeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHH
Q 046202 349 ELGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTL 428 (448)
Q Consensus 349 ~~g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l 428 (448)
.++ .+.+ ..+++. .+.+=.---++++++|.|+|+.--+.|+... |+..++...+---|++.+.+.
T Consensus 83 ~~~-~I~~-~~~~Gp--------F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~-----l~~~~~~~~~~~~~~~mv~AF 147 (158)
T PRK10724 83 SNQ-SILM-QLVDGP--------FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK-----LIELAFGRVFKELASNMVQAF 147 (158)
T ss_pred CCC-EEEE-EecCCC--------hhhccceEEEEECCCCCEEEEEEEEEEEchH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 333 3333 223321 1223333346778777799999988887755 555555433333456666555
Q ss_pred HHHHHHH
Q 046202 429 QRTCERL 435 (448)
Q Consensus 429 ~R~cer~ 435 (448)
.+-|+.+
T Consensus 148 ~~Ra~~~ 154 (158)
T PRK10724 148 TVRAKEV 154 (158)
T ss_pred HHHHHHH
Confidence 5555543
No 81
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=81.33 E-value=26 Score=29.75 Aligned_cols=134 Identities=10% Similarity=0.026 Sum_probs=72.3
Q ss_pred eeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeecC
Q 046202 271 SGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIEL 350 (448)
Q Consensus 271 ~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~~ 350 (448)
+..|...+..+-++|.|.+.|.+-+|.+ ..+++++. + +. ++.+-.|....+.+ ..+++. ...
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~----~~~~~~~~--~----~~------~~~~~~~~g~~~~~-~~~v~~-~~~ 66 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHV----ESVEQLDD--T----RS------HWKAKGPAGLSVEW-DAEITE-QVP 66 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhh----cEEEEcCC--C----ce------EEEEecCCCCcEEE-EEEEec-cCC
Confidence 3455667889999999999999999987 33455532 1 11 11112232334443 335543 334
Q ss_pred CeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHH
Q 046202 351 GLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQR 430 (448)
Q Consensus 351 g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R 430 (448)
+..++.. ..++.. . ....++ +.+.++|.++||+.-|.+.... ..-.++-+++....--..+++|..|.+
T Consensus 67 ~~~i~~~-~~~~~~-~--~~~~~~------f~~~~~~~T~vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~lk~ 135 (139)
T cd07817 67 NERIAWR-SVEGAD-P--NAGSVR------FRPAPGRGTRVTLTIEYEPPGG-AEGAAVAGLLGGEPERQLREDLRRFKQ 135 (139)
T ss_pred CCEEEEE-ECCCCC-C--cceEEE------EEECCCCCeEEEEEEEEECCcc-hhhhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 4433322 332211 1 111222 4666767799999988887644 232344444433333345566666666
Q ss_pred HHH
Q 046202 431 TCE 433 (448)
Q Consensus 431 ~ce 433 (448)
++|
T Consensus 136 ~aE 138 (139)
T cd07817 136 LVE 138 (139)
T ss_pred Hhh
Confidence 654
No 82
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=81.13 E-value=0.81 Score=51.38 Aligned_cols=47 Identities=19% Similarity=0.496 Sum_probs=43.5
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 28 IQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 28 l~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
...|...|..|..|+..+...+|.+.||+.+-|+.||+++++.....
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv 614 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSV 614 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhh
Confidence 77889999999999999999999999999999999999998886663
No 83
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.59 E-value=7.8 Score=32.10 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=35.7
Q ss_pred HHhHHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHH
Q 046202 73 AQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEK 139 (448)
Q Consensus 73 r~~~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r 139 (448)
-++.-.....|+-+.+.|+.+|..+.+.... .......|..||..||+|..-
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~---------------~~~~r~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN---------------AQHQREELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHHHHHHH
Confidence 3444455667788888888888888776511 112235699999999999864
No 84
>smart00338 BRLZ basic region leucin zipper.
Probab=80.41 E-value=5.7 Score=30.96 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=30.9
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHH
Q 046202 77 RANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHE 138 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~ 138 (448)
......|..+...|..+|..|+..+ .+|..|+..|++++.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~----------------------~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEI----------------------ERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHhc
Confidence 4556677788888888888888877 678888888887763
No 85
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.20 E-value=4.6 Score=29.87 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=14.8
Q ss_pred HHhhhHHHHHhhHHHHHhHHHHHH
Q 046202 76 ERANNSVLRAENERVHCENLAIRE 99 (448)
Q Consensus 76 ~r~e~~~L~~ene~L~~en~~l~~ 99 (448)
.+.+...|+..++.|+++++++..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~ 26 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKK 26 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777766555443
No 86
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=75.66 E-value=14 Score=31.22 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=33.8
Q ss_pred eeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHHHH
Q 046202 380 MIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCE 433 (448)
Q Consensus 380 lIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~ce 433 (448)
.+.+.+.|.|+|+|..... . ....++..++...+.-|-++|+..|.++||
T Consensus 92 ~~~~~~~~~T~~~~~~~~~---g-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 92 ELEPLGDGGTRFVHRETFS---G-LLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEcCCCcEEEEEeeEEE---E-EEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 3567766779998864222 1 122345666777777778889999998886
No 87
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=75.10 E-value=5.4 Score=40.35 Aligned_cols=42 Identities=29% Similarity=0.267 Sum_probs=27.5
Q ss_pred hhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHH
Q 046202 79 NNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHE 138 (448)
Q Consensus 79 e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~ 138 (448)
....+++||++|+.|+..++.++. ...+.|+.||++||+.|+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~------------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE------------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhc
Confidence 345577888888888777755540 111237888888888766
No 88
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=74.99 E-value=12 Score=29.08 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=15.7
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHh
Q 046202 77 RANNSVLRAENERVHCENLAIREAL 101 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~ 101 (448)
......|......|..+|..|+..+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~ 49 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKEL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777766666665
No 89
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=73.97 E-value=6.1 Score=39.32 Aligned_cols=42 Identities=36% Similarity=0.442 Sum_probs=28.0
Q ss_pred hhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHH
Q 046202 78 ANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHE 138 (448)
Q Consensus 78 ~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~ 138 (448)
.....+++||+.|++||..++... .+.+.++.||.+|++-++
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~-------------------~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRL-------------------QELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhc
Confidence 345667777777777777776665 123456777777777665
No 90
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=73.03 E-value=0.52 Score=37.20 Aligned_cols=44 Identities=9% Similarity=0.127 Sum_probs=28.4
Q ss_pred CCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeecc
Q 046202 18 ITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65 (448)
Q Consensus 18 r~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQ 65 (448)
+++++||+++...+-..+. .......++|+++|+++.++..|-+
T Consensus 2 ~~r~~ys~e~K~~~v~~~~----~~g~sv~~va~~~gi~~~~l~~W~~ 45 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYL----ESGESVSEVAREYGISPSTLYNWRK 45 (76)
T ss_dssp -SS----HHHHHHHHHHHH----HHHCHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH----HCCCceEeeecccccccccccHHHH
Confidence 3455799998877766652 2235678899999999999998854
No 91
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.49 E-value=12 Score=27.76 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=30.3
Q ss_pred HHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhh
Q 046202 82 VLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNL 143 (448)
Q Consensus 82 ~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~ 143 (448)
++...++.|++..+.++... ..|..||..|+.|+..+...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~----------------------~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEY----------------------DSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHh
Confidence 45667778888877777665 67888888888888877654
No 92
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=71.78 E-value=24 Score=30.74 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=32.2
Q ss_pred eeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHHHH
Q 046202 381 IQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCE 433 (448)
Q Consensus 381 Iq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~ce 433 (448)
+++.++ .|+|+|..+.++.-. ....++..++...+.=...+.|..|.+++|
T Consensus 99 ~~~~~~-gT~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 99 LEPVGG-GTKVTWGMSGELPFP-LKLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred EEEcCC-ceEEEEEEEecCCch-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 566744 599999998887754 333455555544444445666666666665
No 93
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=70.54 E-value=27 Score=29.39 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=27.6
Q ss_pred eeEEechhhHHHHhcChhhhhhhcccccccceEeEEecC
Q 046202 272 GMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEP 310 (448)
Q Consensus 272 ~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~ 310 (448)
..|...+..+-+.|.|.+.|.+-+|.+ ..+++...
T Consensus 7 ~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~~~ 41 (140)
T cd07821 7 VTIDAPADKVWALLSDFGGLHKWHPAV----ASCELEGG 41 (140)
T ss_pred EEECCCHHHHHHHHhCcCchhhhccCc----ceEEeecC
Confidence 456778889999999999999999876 45555554
No 94
>PF15058 Speriolin_N: Speriolin N terminus
Probab=70.24 E-value=19 Score=34.73 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=33.7
Q ss_pred hHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhh
Q 046202 80 NSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNL 143 (448)
Q Consensus 80 ~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~ 143 (448)
++-++.++++|-.||+++|+.+ +|..||++||.-|...++-
T Consensus 7 yeGlrhqierLv~ENeeLKKlV-----------------------rLirEN~eLksaL~ea~~~ 47 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLV-----------------------RLIRENHELKSALGEACAE 47 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHH-----------------------HHHHHHHHHHHHHHHhhcc
Confidence 4556788889999999999997 6889999999887776653
No 95
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.16 E-value=27 Score=28.39 Aligned_cols=54 Identities=28% Similarity=0.394 Sum_probs=34.2
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHH----HHhhhhh
Q 046202 77 RANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHE----KVSNLLA 145 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~----r~~~~~~ 145 (448)
-.-...|+-+.+.|+.+|..+..... +.......|..||..||+|-. |+.+++.
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q---------------~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQ---------------NAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667778888888776665541 111223468999999999975 5555443
No 96
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.45 E-value=18 Score=35.76 Aligned_cols=47 Identities=28% Similarity=0.382 Sum_probs=34.6
Q ss_pred HHhHHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHh
Q 046202 73 AQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVS 141 (448)
Q Consensus 73 r~~~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~ 141 (448)
-+...+++..|..+++.|.++..+.++.+ ..|+.||++|.+++.++-
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erl----------------------k~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERL----------------------KRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHhch
Confidence 34445667777777777777777777776 678899999988877654
No 97
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=58.67 E-value=21 Score=36.39 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=34.3
Q ss_pred HhHHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHH
Q 046202 74 QNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEK 139 (448)
Q Consensus 74 ~~~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r 139 (448)
++++.+.+.+..|.+.|..+|++|+++. ++|.-|-.+||+=+-.
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa----------------------~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQA----------------------SELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHH
Confidence 4456777788888889999999999887 6677788888876554
No 98
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.75 E-value=41 Score=39.35 Aligned_cols=53 Identities=13% Similarity=0.339 Sum_probs=36.4
Q ss_pred HHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhh
Q 046202 84 RAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNL 143 (448)
Q Consensus 84 ~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~ 143 (448)
+..++.|..+.+-|+..+.+. ||. +.+..+++..||..+|++||+-+-|+..+
T Consensus 338 kEr~deletdlEILKaEmeek-----G~~--~~~~ss~qfkqlEqqN~rLKdalVrLRDl 390 (1243)
T KOG0971|consen 338 KERVDELETDLEILKAEMEEK-----GSD--GQAASSYQFKQLEQQNARLKDALVRLRDL 390 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CCC--CcccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444555677777666 332 33456789999999999999999887644
No 99
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=54.44 E-value=68 Score=34.81 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHh-Hhc-CCCCCHHHHHHHHHHhCCCcceeeeeccccchHH-hHHhHHhhhHHHHHhhHHHHHhHHHHH
Q 046202 22 RHTTHQIQTLEAF-FKD-CPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQT-KAQNERANNSVLRAENERVHCENLAIR 98 (448)
Q Consensus 22 r~T~eQl~~LE~~-F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~-Kr~~~r~e~~~L~~ene~L~~en~~l~ 98 (448)
++|.+....|.+. +.. ..+|-.+.-+++.++. +.=.+|+|.+. +|++++.=...|......-.+||.+|+
T Consensus 220 ~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv-------RRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~ 292 (472)
T KOG0709|consen 220 VLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV-------RRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQ 292 (472)
T ss_pred eccHHHHHHHHhccCcCcccCCchHHHHHHHHHH-------HHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHH
Confidence 5777777777665 222 3355555555555443 21222333221 111112222333444455666888888
Q ss_pred HHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhhhh
Q 046202 99 EALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNLLA 145 (448)
Q Consensus 99 ~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~~~ 145 (448)
+.. ++|..+|..|-++|.++.+...
T Consensus 293 kkV----------------------~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 293 KKV----------------------EELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHH----------------------HHHhhccHHHHHHHHHHHHHHh
Confidence 887 7899999999999999877643
No 100
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=54.21 E-value=17 Score=37.64 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=12.5
Q ss_pred hhHHHHHhhHHHHHhHHHHHHHh
Q 046202 79 NNSVLRAENERVHCENLAIREAL 101 (448)
Q Consensus 79 e~~~L~~ene~L~~en~~l~~a~ 101 (448)
++..|+.||++|+.||..|+..+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eV 55 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEV 55 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHH
Confidence 44555555555555555555544
No 101
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.28 E-value=26 Score=38.09 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHhHhcCCCCCHHHHHHHH
Q 046202 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLS 50 (448)
Q Consensus 22 r~T~eQl~~LE~~F~~~~~Ps~~~R~~LA 50 (448)
.+++++++.|.-. --.|...-|.-.+
T Consensus 41 ~ltpee~kalGie---gDTP~DTlrTlva 66 (472)
T TIGR03752 41 ELSPEELKALGIE---GDTPADTLRTLVA 66 (472)
T ss_pred cCCcchhHhcCCC---CCCccchHHHHHH
Confidence 4777776666432 3345555554444
No 102
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=52.59 E-value=1.3e+02 Score=26.42 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=27.6
Q ss_pred eEEechhhHHHHhcChhhhhhhcccccccceEeEEec
Q 046202 273 MVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLE 309 (448)
Q Consensus 273 ~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~ 309 (448)
.+...+.++-+++.|.+.|.+-.|.+ ..+.+++
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~~ 40 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGV----ERVVELE 40 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhce----EEEEEcc
Confidence 45567889999999999999999988 6666776
No 103
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=52.19 E-value=4 Score=48.80 Aligned_cols=98 Identities=19% Similarity=0.180 Sum_probs=72.6
Q ss_pred CCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHhhhHHHHHhhHHHHHhHH
Q 046202 16 GKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERANNSVLRAENERVHCENL 95 (448)
Q Consensus 16 ~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~~~L~~ene~L~~en~ 95 (448)
.+-.+++++.-|...|..+|+...+|.-.+...++.-|++..|.+-.||+++++++.+...+... -.
T Consensus 444 ~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~ar-------------g~ 510 (1406)
T KOG1146|consen 444 PLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLAR-------------GE 510 (1406)
T ss_pred hhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccc-------------cc
Confidence 34456788899999999999999999999999999999999999999999988887764333221 01
Q ss_pred HHHHHhhccCCCCCCCCCCCCccchhhHHHH
Q 046202 96 AIREALKNVICPSCGGPPFGIEERQRSLQKL 126 (448)
Q Consensus 96 ~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L 126 (448)
...--.+..-|-.|...+...+.++...+..
T Consensus 511 ~~~~~~~p~~C~~C~~stttng~LsihlqS~ 541 (1406)
T KOG1146|consen 511 VYRCPGKPYPCRACNYSTTTNGNLSIHLQSD 541 (1406)
T ss_pred cccCCCCcccceeeeeeeecchHHHHHHHHH
Confidence 1222334467999998886666665544433
No 104
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=51.84 E-value=67 Score=25.85 Aligned_cols=46 Identities=33% Similarity=0.377 Sum_probs=29.1
Q ss_pred hhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHH
Q 046202 79 NNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEK 139 (448)
Q Consensus 79 e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r 139 (448)
+++....++..|..|++....++ ++...+..+|+.||..|++|++.
T Consensus 20 k~~~~~~~~k~L~~ERd~~~~~l---------------~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 20 KNSVHEIENKRLRRERDSAERQL---------------GDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777766555544 23344557788888888888765
No 105
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=50.25 E-value=1.2e+02 Score=24.24 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=27.3
Q ss_pred eeeEEechhhHHHHhcChhhhhhhcccccccceEeEEec
Q 046202 271 SGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLE 309 (448)
Q Consensus 271 ~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~ 309 (448)
+..|...+..+-+.|.|.+.|...+|.+ ...+++.
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~----~~~~~~~ 38 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGL----ERVEVLG 38 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCccc----ceEEEcC
Confidence 4456667899999999999999999987 4445544
No 106
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.90 E-value=68 Score=28.01 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=10.0
Q ss_pred HHHHHHHHhHHHHHHHHh
Q 046202 124 QKLQLENSQLKEEHEKVS 141 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~ 141 (448)
..|++||+.|++.+..+.
T Consensus 39 ~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 39 ARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555566666655555543
No 107
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=49.70 E-value=77 Score=25.39 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=31.2
Q ss_pred hHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhhhhhh
Q 046202 80 NSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNLLAKY 147 (448)
Q Consensus 80 ~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~~~~~ 147 (448)
-..|-...+.|+.||..++... ..+..|++.|.+..+-+...+...
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~----------------------~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQE----------------------KTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888887776 567788888887777555444433
No 108
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=49.37 E-value=1.3e+02 Score=25.11 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=44.2
Q ss_pred HHhHHhHHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhh
Q 046202 70 QTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSN 142 (448)
Q Consensus 70 K~Kr~~~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~ 142 (448)
+.++..-+++-..|+.+.++=..-+..|..++..+.++-+..|. .++...+.|..|-|.|..|+.++-.
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~----~lp~~~keLL~EIA~lE~eV~~LE~ 75 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPS----SLPKKAKELLEEIALLEAEVAKLEQ 75 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccc----cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677766666666667888888776655544433 3344556788888888888776543
No 109
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=48.92 E-value=80 Score=31.76 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=27.5
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhhhh
Q 046202 77 RANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNLLA 145 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~~~ 145 (448)
++.|..++...++-+....+++... .++.-|.+.|+.++..|++|+..+..+..
T Consensus 200 ~rNN~A~~kSR~~~k~~~~e~~~r~---------------~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 200 RRNNEAVRKSRDKRKQKEDEMAHRV---------------AELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HhhhHHHHHhhhhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444443 12233445555555566666666555443
No 110
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=47.68 E-value=55 Score=28.55 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=36.9
Q ss_pred hHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhhhhhhc
Q 046202 80 NSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNLLAKYI 148 (448)
Q Consensus 80 ~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~~~~~~ 148 (448)
-..+.+....+.++...|+..+ ..|..||++|+-|.+.+...+.+..
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~----------------------~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQL----------------------QELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566667777778888887 7899999999999999988776653
No 111
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=46.05 E-value=23 Score=38.99 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=18.0
Q ss_pred hccCCCCcccCCCCCCCCccccChhhhccc
Q 046202 222 MRINEPLWIKPPSSTNIERYVIHPESYEKV 251 (448)
Q Consensus 222 a~~~~plWi~~~~~~~~~~e~ln~~~y~~~ 251 (448)
....++|.+.++|. +-.+|.-||.+.
T Consensus 438 lne~p~L~~~s~dc----r~~~n~te~~~l 463 (655)
T KOG4343|consen 438 LNEEPLLYIPSPDC----RPLINTTESLRL 463 (655)
T ss_pred ccCCCceeccCccc----hhhhhhhhhhhh
Confidence 36678888888743 336777788765
No 112
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=44.80 E-value=43 Score=33.94 Aligned_cols=43 Identities=28% Similarity=0.294 Sum_probs=26.2
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHH
Q 046202 77 RANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHE 138 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~ 138 (448)
-.+...+..+|+.|++++.++.... .+.+.|+.||.+||+.+.
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~-------------------~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLL-------------------EEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhC
Confidence 3445556666777776665554443 234567777777777666
No 113
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=44.31 E-value=91 Score=27.44 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=11.6
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 046202 123 LQKLQLENSQLKEEHEKV 140 (448)
Q Consensus 123 ~~~L~~ENa~Lk~el~r~ 140 (448)
...|++||..|++.++++
T Consensus 38 N~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 38 NTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356666676666666654
No 114
>smart00340 HALZ homeobox associated leucin zipper.
Probab=41.84 E-value=30 Score=25.51 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.4
Q ss_pred HHHHHHHHhHHHHHHHHhhh
Q 046202 124 QKLQLENSQLKEEHEKVSNL 143 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~~~ 143 (448)
..|..||.+|+.|++.+.++
T Consensus 15 e~LteeNrRL~ke~~eLral 34 (44)
T smart00340 15 ESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45888999999999988764
No 115
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=38.58 E-value=67 Score=32.32 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=11.9
Q ss_pred cchhhHHHHHHHHHhHHHHHHHHhhh
Q 046202 118 ERQRSLQKLQLENSQLKEEHEKVSNL 143 (448)
Q Consensus 118 e~~~e~~~L~~ENa~Lk~el~r~~~~ 143 (448)
++......|..||+.|+.+++.+...
T Consensus 219 e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 219 EMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555554444433
No 116
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=38.49 E-value=57 Score=34.08 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=27.3
Q ss_pred hhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHH
Q 046202 78 ANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHE 138 (448)
Q Consensus 78 ~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~ 138 (448)
.....+++||+.|+.||..++.++ .+.+.+..||++|++-+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l-------------------~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERL-------------------KSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhc
Confidence 445677778888888887777665 112446677887765443
No 117
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.30 E-value=1.1e+02 Score=27.04 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=35.5
Q ss_pred hHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhhhhhh
Q 046202 80 NSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNLLAKY 147 (448)
Q Consensus 80 ~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~~~~~ 147 (448)
-..+.++...+..+...|+..+ ..|..||+.|+-|.+.+...+.+.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~----------------------~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQL----------------------AELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566667777777888777 789999999999999988877654
No 118
>PHA03162 hypothetical protein; Provisional
Probab=38.03 E-value=28 Score=31.57 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=21.3
Q ss_pred CCccchhhHHHHHHHHHhHHHHHHH
Q 046202 115 GIEERQRSLQKLQLENSQLKEEHEK 139 (448)
Q Consensus 115 ~~~e~~~e~~~L~~ENa~Lk~el~r 139 (448)
..+|+..+.++|.+||..||.++.+
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888999999999999998864
No 119
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=36.90 E-value=15 Score=31.27 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=16.8
Q ss_pred HHHHHHhCCCcceeeeeccc
Q 046202 47 RQLSKELGLDLKQIKFWFQN 66 (448)
Q Consensus 47 ~~LA~~LgLs~rQVkvWFQN 66 (448)
.++|+.+|++++.++.|-++
T Consensus 4 ~EvA~~~gVs~~tLR~ye~~ 23 (99)
T cd04765 4 GEVAEILGLPPHVLRYWETE 23 (99)
T ss_pred HHHHHHHCcCHHHHHHHHHH
Confidence 47899999999999999654
No 120
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=36.90 E-value=87 Score=34.73 Aligned_cols=14 Identities=7% Similarity=0.040 Sum_probs=10.3
Q ss_pred CCeEEEEEEecCCC
Q 046202 350 LGLWVIVDVSYEWP 363 (448)
Q Consensus 350 ~g~w~vvDvS~d~~ 363 (448)
+.++.||-+-.|.+
T Consensus 551 gDTfYV~Sf~~Dh~ 564 (655)
T KOG4343|consen 551 GDTFYVVSFRRDHL 564 (655)
T ss_pred CCeEEEEEecccce
Confidence 67888888777753
No 121
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=36.77 E-value=74 Score=24.42 Aligned_cols=20 Identities=40% Similarity=0.507 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhHHHHHHHHh
Q 046202 122 SLQKLQLENSQLKEEHEKVS 141 (448)
Q Consensus 122 e~~~L~~ENa~Lk~el~r~~ 141 (448)
+...|..||..|+.||++..
T Consensus 30 rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 30 RLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34778999999999998754
No 122
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=36.69 E-value=43 Score=25.59 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhHhcCC--CCCHHHHHHHHHHhCCCcce
Q 046202 23 HTTHQIQTLEAFFKDCP--HPDENQRRQLSKELGLDLKQ 59 (448)
Q Consensus 23 ~T~eQl~~LE~~F~~~~--~Ps~~~R~~LA~~LgLs~rQ 59 (448)
+|+.|...|...|...- +|-...-.+||+++|+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHH
Confidence 58899999999988754 36667778999999999864
No 123
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=36.15 E-value=16 Score=27.04 Aligned_cols=8 Identities=50% Similarity=1.178 Sum_probs=6.4
Q ss_pred cchhhHHH
Q 046202 419 YGAERWVV 426 (448)
Q Consensus 419 fGA~RW~~ 426 (448)
-||+|||+
T Consensus 38 ~garrwl~ 45 (49)
T PF07151_consen 38 SGARRWLA 45 (49)
T ss_pred hhhhHHHh
Confidence 38999986
No 124
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=35.60 E-value=52 Score=25.87 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=9.2
Q ss_pred HHHhhHHHHHhHHHHHHHh
Q 046202 83 LRAENERVHCENLAIREAL 101 (448)
Q Consensus 83 L~~ene~L~~en~~l~~a~ 101 (448)
.+.|-+.|+.....+.+..
T Consensus 12 VrEEVevLK~~I~eL~~~n 30 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERN 30 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444
No 125
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.48 E-value=1.5e+02 Score=27.84 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=9.4
Q ss_pred HHHHHHHHhHHHHHHHHhh
Q 046202 124 QKLQLENSQLKEEHEKVSN 142 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~~ 142 (448)
..|..++..+++++.-+-.
T Consensus 128 ~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 128 EKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554433
No 126
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=34.18 E-value=2.6e+02 Score=25.44 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=14.6
Q ss_pred HHHHHHHHhHHHHHHHHhhhh
Q 046202 124 QKLQLENSQLKEEHEKVSNLL 144 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~~~~ 144 (448)
.+++.|-.-+|..++++..++
T Consensus 98 s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 98 SRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 445666677888888877654
No 127
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=32.67 E-value=14 Score=25.81 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccc
Q 046202 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKR 68 (448)
Q Consensus 22 r~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 68 (448)
.+++.+...+...|... ..-.++|..+|++...|+.|...-+
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46778888888777432 2356789999999999988775433
No 128
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.32 E-value=4.4e+02 Score=28.95 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=35.9
Q ss_pred eeeccccchHHhHHhHHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHH
Q 046202 61 KFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEK 139 (448)
Q Consensus 61 kvWFQNRRaK~Kr~~~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r 139 (448)
..=|-.+..+.+-...+.....|.++.++|+.|...+.... .+..-..+.|..||++|+++++.
T Consensus 59 ~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~---------------~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 59 DTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQR---------------GDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444554555555566667777777776655333332 11112224678889999888853
No 129
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.23 E-value=1e+02 Score=33.71 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=13.9
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHH
Q 046202 77 RANNSVLRAENERVHCENLAIREA 100 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a 100 (448)
+.+.+.+..+|+.|++||++|++.
T Consensus 72 r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 72 RKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566666666666666553
No 130
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=32.14 E-value=46 Score=31.48 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=18.1
Q ss_pred ccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHH
Q 046202 103 NVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEH 137 (448)
Q Consensus 103 ~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el 137 (448)
+-.||.||++. ..-|-+-..+.|...-..|++++
T Consensus 136 ~F~Cp~Cg~~L-~~~dn~~~~~~l~~~I~~l~~~~ 169 (178)
T PRK06266 136 GFRCPQCGEML-EEYDNSELIKELKEQIKELEEEL 169 (178)
T ss_pred CCcCCCCCCCC-eecccHHHHHHHHHHHHHHHHHh
Confidence 46799999988 43333333333444444444443
No 131
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=31.95 E-value=1.7e+02 Score=28.75 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=35.2
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhhhhh
Q 046202 77 RANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNLLAK 146 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~~~~ 146 (448)
..-..+++....+++++...+.+.. ...|+.||..||-|++++...+..
T Consensus 93 ~~v~~QQ~~~f~kiRsel~S~e~sE---------------------F~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 93 EKVSYQQKVDFAKIRSELVSIERSE---------------------FANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677778888776665543 356999999999999998766543
No 132
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=31.89 E-value=24 Score=25.69 Aligned_cols=38 Identities=5% Similarity=0.175 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeec
Q 046202 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWF 64 (448)
Q Consensus 22 r~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWF 64 (448)
.+++.+...+...|... ..-.++|..+|++...|+.+.
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~lg~s~~~V~~~~ 41 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERLGISRSTVRRIL 41 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHHCCcHHHHHHHH
Confidence 57889999999998332 346789999999998876543
No 133
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=31.69 E-value=38 Score=30.21 Aligned_cols=23 Identities=48% Similarity=0.590 Sum_probs=19.8
Q ss_pred ccchhhHHHHHHHHHhHHHHHHH
Q 046202 117 EERQRSLQKLQLENSQLKEEHEK 139 (448)
Q Consensus 117 ~e~~~e~~~L~~ENa~Lk~el~r 139 (448)
+|+..+.++|.+||..||.++.+
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 46667789999999999999986
No 134
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.56 E-value=1.6e+02 Score=22.67 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=11.0
Q ss_pred HHHHHHHHhHHHHHHHHh
Q 046202 124 QKLQLENSQLKEEHEKVS 141 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~ 141 (448)
..|..++..|++++..+.
T Consensus 43 ~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 43 EELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666666554
No 135
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=31.28 E-value=1.2e+02 Score=30.34 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=17.3
Q ss_pred HHhhhHHHHHhhHHHHHhHHHHHHHh
Q 046202 76 ERANNSVLRAENERVHCENLAIREAL 101 (448)
Q Consensus 76 ~r~e~~~L~~ene~L~~en~~l~~a~ 101 (448)
...+|..|+.+|+.|++.|..|-...
T Consensus 102 L~een~~L~~en~~Lr~~n~~L~~~n 127 (292)
T KOG4005|consen 102 LTEENEILQNENDSLRAINESLLAKN 127 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35667777777777777776665443
No 136
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.92 E-value=1.8e+02 Score=28.26 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=7.5
Q ss_pred hhHHHHHhHHHHHHHh
Q 046202 86 ENERVHCENLAIREAL 101 (448)
Q Consensus 86 ene~L~~en~~l~~a~ 101 (448)
+...|+.+|.++++++
T Consensus 133 ~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 133 VINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334555555554444
No 137
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=30.29 E-value=1.3e+02 Score=25.37 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=25.2
Q ss_pred EechhhHHHHhcChhhhhhhcccccccceEeEEecCC
Q 046202 275 TMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPG 311 (448)
Q Consensus 275 ~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g 311 (448)
...+..+-+++.|.+.|.+.+|.+ .-++|++..
T Consensus 2 ~ap~~~V~~~i~D~e~~~~~~p~~----~~v~vl~~~ 34 (130)
T PF03364_consen 2 NAPPEEVWSVITDYENYPRFFPPV----KEVRVLERD 34 (130)
T ss_dssp SS-HHHHHHHHTTGGGHHHHCTTE----EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCC----ceEEEEEeC
Confidence 345778889999999999999999 335566643
No 138
>PHA03155 hypothetical protein; Provisional
Probab=30.17 E-value=48 Score=29.38 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=20.9
Q ss_pred CCccchhhHHHHHHHHHhHHHHHHH
Q 046202 115 GIEERQRSLQKLQLENSQLKEEHEK 139 (448)
Q Consensus 115 ~~~e~~~e~~~L~~ENa~Lk~el~r 139 (448)
..+|+..+.++|.+||..||..+.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5567888889999999999998864
No 139
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=29.61 E-value=49 Score=34.50 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=11.9
Q ss_pred HhhHHHHHhHHHHHHHh
Q 046202 85 AENERVHCENLAIREAL 101 (448)
Q Consensus 85 ~ene~L~~en~~l~~a~ 101 (448)
.|+-.|+.||.+|++..
T Consensus 32 ~e~~aLr~EN~~LKkEN 48 (420)
T PF07407_consen 32 DENFALRMENHSLKKEN 48 (420)
T ss_pred hhhhhHHHHhHHHHHHH
Confidence 45667777777777765
No 140
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.41 E-value=1.7e+02 Score=28.32 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=27.0
Q ss_pred hhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHH
Q 046202 78 ANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEK 139 (448)
Q Consensus 78 ~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r 139 (448)
.....|+.+|+.|+.++..++... ..|..+|..+++....
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~----------------------~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKV----------------------DAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHH
Confidence 334447777777777777777665 4567777777776654
No 141
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.12 E-value=1e+02 Score=32.26 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=16.8
Q ss_pred cchhhHHHHHHHHHhHHHHHHHHhhhhhhh
Q 046202 118 ERQRSLQKLQLENSQLKEEHEKVSNLLAKY 147 (448)
Q Consensus 118 e~~~e~~~L~~ENa~Lk~el~r~~~~~~~~ 147 (448)
+...|.++|+..|..|+.+|-++..+..+.
T Consensus 96 e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~ 125 (401)
T PF06785_consen 96 ERQQESEQLQSQNQKLKNQLFHVREVFMKT 125 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 444555666666666666665555444443
No 142
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=28.99 E-value=65 Score=26.62 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHHHHHhhh
Q 046202 125 KLQLENSQLKEEHEKVSNL 143 (448)
Q Consensus 125 ~L~~ENa~Lk~el~r~~~~ 143 (448)
.|..||++||+|++++.+.
T Consensus 4 ei~eEn~~Lk~eiqkle~E 22 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAE 22 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677888888887765543
No 143
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=28.89 E-value=57 Score=20.01 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeee
Q 046202 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFW 63 (448)
Q Consensus 22 r~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvW 63 (448)
.++.++...+...|... + ...++++.+|++...|..|
T Consensus 5 ~~~~~~~~~i~~~~~~~-~----s~~~ia~~~~is~~tv~~~ 41 (42)
T cd00569 5 KLTPEQIEEARRLLAAG-E----SVAEIARRLGVSRSTLYRY 41 (42)
T ss_pred cCCHHHHHHHHHHHHcC-C----CHHHHHHHHCCCHHHHHHh
Confidence 36667666666666532 2 4557889999988777665
No 144
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=28.81 E-value=4.7e+02 Score=28.10 Aligned_cols=18 Identities=11% Similarity=0.375 Sum_probs=11.5
Q ss_pred HHHHHHHHHhCCCcceee
Q 046202 44 NQRRQLSKELGLDLKQIK 61 (448)
Q Consensus 44 ~~R~~LA~~LgLs~rQVk 61 (448)
..-++||+.++..-.+|.
T Consensus 281 tKveelar~Lr~~I~~Va 298 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVA 298 (442)
T ss_pred HHHHHHHHHHhhhHHHHH
Confidence 345678888876655543
No 145
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=28.35 E-value=1.1e+02 Score=30.36 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=30.6
Q ss_pred hhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHH---hHHHHHHHHhhhh
Q 046202 79 NNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENS---QLKEEHEKVSNLL 144 (448)
Q Consensus 79 e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa---~Lk~el~r~~~~~ 144 (448)
+....-.....+++||++|+++. .+|+.+++ .|++|.+++..++
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~----------------------~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKEL----------------------LELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444466778888998888887 45555555 6678888877654
No 146
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=28.29 E-value=2e+02 Score=31.00 Aligned_cols=118 Identities=13% Similarity=0.143 Sum_probs=65.0
Q ss_pred CCCCCeeeeeccee---eEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCcccc
Q 046202 259 KTSSARVESSKYSG---MVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVS 335 (448)
Q Consensus 259 ~~~~~~~easR~~~---~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp 335 (448)
.++|-...|+=... +=.+|...|-.+|.-.. .=|+.|.-..-=+.-+.|+++-++-+= +| .--.-
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt-------dkVt~ak~~~~~~~vVsgs~DRtiK~W--Dl---~k~~C 295 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT-------DKVTAAKFKLSHSRVVSGSADRTIKLW--DL---QKAYC 295 (459)
T ss_pred cCCCceEEeecCCCceeeeeccchhhhhhhcccc-------cceeeehhhccccceeeccccchhhhh--hh---hhhhe
Confidence 34565666654333 66778888888775421 012222211100002235555555431 11 12455
Q ss_pred CceeEEEEeeeeecCCeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEE
Q 046202 336 PREYYFLRHCQQIELGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLE 395 (448)
Q Consensus 336 ~Re~~flRyc~q~~~g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwve 395 (448)
+|++.+.=||--+.-+ ++.+-+.|.+. .+|+|-.-|+=..+.+|-|. +||-|+
T Consensus 296 ~kt~l~~S~cnDI~~~-----~~~~~SgH~Dk-kvRfwD~Rs~~~~~sv~~gg-~vtSl~ 348 (459)
T KOG0288|consen 296 SKTVLPGSQCNDIVCS-----ISDVISGHFDK-KVRFWDIRSADKTRSVPLGG-RVTSLD 348 (459)
T ss_pred eccccccccccceEec-----ceeeeeccccc-ceEEEeccCCceeeEeecCc-ceeeEe
Confidence 6677777777765543 33333444443 48899877888888898886 998884
No 147
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.64 E-value=50 Score=24.79 Aligned_cols=9 Identities=56% Similarity=1.416 Sum_probs=5.5
Q ss_pred CCCCCCCCC
Q 046202 105 ICPSCGGPP 113 (448)
Q Consensus 105 ~C~~Cgg~~ 113 (448)
.||-|+.+.
T Consensus 22 ~CPlC~r~l 30 (54)
T PF04423_consen 22 CCPLCGRPL 30 (54)
T ss_dssp E-TTT--EE
T ss_pred cCCCCCCCC
Confidence 899999987
No 148
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=27.59 E-value=1.6e+02 Score=31.29 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=31.9
Q ss_pred HHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhh
Q 046202 76 ERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSN 142 (448)
Q Consensus 76 ~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~ 142 (448)
.......++.+++.|..++..+.... .+++.|..+|++|++++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 20 LYEKLKELEKELEFLDIQEEYIKEEQ----------------------KNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHhC
Confidence 33444556667777777777777665 5677888889999888754
No 149
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=27.55 E-value=4e+02 Score=23.63 Aligned_cols=38 Identities=26% Similarity=0.173 Sum_probs=29.2
Q ss_pred HHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHH
Q 046202 76 ERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKE 135 (448)
Q Consensus 76 ~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~ 135 (448)
+.+-.-..+.|-+.|+.+..++.+.. .+|+.||..||.
T Consensus 58 KtHLmfAVREEVe~Lk~qI~eL~er~----------------------~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 58 KTHLMFAVREEVEVLKEQIRELEERN----------------------SALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHh
Confidence 44556677788888888888887776 678899998884
No 150
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.49 E-value=1.8e+02 Score=31.84 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=18.1
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHhhcc
Q 046202 411 DLICNNCAYGAERWVVTLQRTCERLLAENSQ 441 (448)
Q Consensus 411 ~l~~sg~afGA~RW~~~l~R~cer~a~~~~~ 441 (448)
+++.+|++=|+..=..+|..+.-.+|-.+..
T Consensus 359 di~~~g~g~G~s~aa~~LadyYik~Aeq~~P 389 (475)
T PRK13729 359 DVLKMGIGGGASKAAQTLSDYYIKRAEQYHP 389 (475)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHhCC
Confidence 3444555556666666666666666655544
No 151
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=27.46 E-value=1.3e+02 Score=30.56 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=30.4
Q ss_pred HHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhH-HHHHHHHHhHHHHHHHHhhhh
Q 046202 82 VLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSL-QKLQLENSQLKEEHEKVSNLL 144 (448)
Q Consensus 82 ~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~-~~L~~ENa~Lk~el~r~~~~~ 144 (448)
.--.....+++||++|++++ .+. +++...+..|++|.+|+..++
T Consensus 63 ~~~~~~~~l~~EN~~Lr~e~-------------------~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 63 ENLKDVNNLEYENYKLRQEL-------------------LKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33446667899999999887 111 445555556889999888765
No 152
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=27.41 E-value=2.9e+02 Score=22.55 Aligned_cols=60 Identities=27% Similarity=0.316 Sum_probs=38.2
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhh
Q 046202 77 RANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNL 143 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~ 143 (448)
......|+.||=.|+-...-+.+.+.+ .+|. ...++.-+.-.|..+++.|+.|+++....
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~------~~~~-~~~~~~keNieLKve~~~L~~el~~~~~~ 65 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQK------LGPE-SIEELLKENIELKVEVESLKRELQEKKKL 65 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh------cccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777787777777777777741 1222 33444555556778888888887765543
No 153
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=26.41 E-value=1e+02 Score=28.27 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=27.3
Q ss_pred EeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeecCCeEEEEEEecCCC
Q 046202 304 TIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIELGLWVIVDVSYEWP 363 (448)
Q Consensus 304 t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~~g~w~vvDvS~d~~ 363 (448)
.+.+++....+..+|.--.+.+++...+. +..-+-|--...+|.|-|+||.++++
T Consensus 86 ~v~~~~~~~~~~~~~~~~~V~t~i~~~~g-----~~i~v~y~l~~~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 86 SVEVLSEPPNGRKGGNRAIVRTEIISKDG-----QPIPVDYRLRKKDGKWKIYDVIIEGV 140 (170)
T ss_dssp EEEE------S-TT-SEEEEEEEEEET-T-----EEEEEEEEEEEETTEEEEEEEEETTE
T ss_pred eEEEEeccCCCCCCCCEEEEEEEEEcCCC-----CcEEEEEEEEEcCCCeEEEEEEEcce
Confidence 35555444433323333445555554443 33334444444889999999999975
No 154
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=26.12 E-value=1.6e+02 Score=27.75 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=6.6
Q ss_pred HHHHHHHHhHHHHHH
Q 046202 124 QKLQLENSQLKEEHE 138 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~ 138 (448)
..|..||..|++++.
T Consensus 121 e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 121 EELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 155
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.18 E-value=1.6e+02 Score=22.94 Aligned_cols=16 Identities=50% Similarity=0.713 Sum_probs=7.0
Q ss_pred HHHHHHHhHHHHHHHH
Q 046202 125 KLQLENSQLKEEHEKV 140 (448)
Q Consensus 125 ~L~~ENa~Lk~el~r~ 140 (448)
++..||..|++|++++
T Consensus 35 ~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 35 ELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 156
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.02 E-value=1.5e+02 Score=27.23 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=42.0
Q ss_pred eeeeccccchHH-----hHHhHHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHH
Q 046202 60 IKFWFQNKRTQT-----KAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLK 134 (448)
Q Consensus 60 VkvWFQNRRaK~-----Kr~~~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk 134 (448)
.++||.|...-. .-..-..+...|+.+...|+.++..++..+.+..+. + +. ..|..+.+.|+
T Consensus 56 qkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~-----~-t~-------~el~~~i~~l~ 122 (169)
T PF07106_consen 56 QKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSE-----P-TN-------EELREEIEELE 122 (169)
T ss_pred eEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C-CH-------HHHHHHHHHHH
Confidence 478888866533 122223456667777777777777776666443221 1 22 34666666667
Q ss_pred HHHHHHhhhhh
Q 046202 135 EEHEKVSNLLA 145 (448)
Q Consensus 135 ~el~r~~~~~~ 145 (448)
+|+..+...+.
T Consensus 123 ~e~~~l~~kL~ 133 (169)
T PF07106_consen 123 EEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 157
>PRK03918 chromosome segregation protein; Provisional
Probab=24.78 E-value=3.3e+02 Score=31.34 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=9.5
Q ss_pred ccCCCCCCCCC
Q 046202 103 NVICPSCGGPP 113 (448)
Q Consensus 103 ~~~C~~Cgg~~ 113 (448)
.+.||.|+.+.
T Consensus 435 ~~~Cp~c~~~L 445 (880)
T PRK03918 435 KGKCPVCGREL 445 (880)
T ss_pred CCCCCCCCCcC
Confidence 47899999988
No 158
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=24.57 E-value=52 Score=29.22 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=25.3
Q ss_pred hhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCC
Q 046202 79 NNSVLRAENERVHCENLAIREALKNVICPSCGG 111 (448)
Q Consensus 79 e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg 111 (448)
.|.+++.++..|+.....+...+....|-.|-.
T Consensus 43 knqqLreQqk~L~e~i~~LE~RLRaGlCDRC~V 75 (120)
T PF10482_consen 43 KNQQLREQQKTLHENIKVLENRLRAGLCDRCTV 75 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 466777777777777777888888888988843
No 159
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.39 E-value=2.9e+02 Score=22.38 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=6.2
Q ss_pred HHHHHhhHHHHHhHHHH
Q 046202 81 SVLRAENERVHCENLAI 97 (448)
Q Consensus 81 ~~L~~ene~L~~en~~l 97 (448)
..|+.+|..|..+|..+
T Consensus 28 eeLke~n~~L~~e~~~L 44 (72)
T PF06005_consen 28 EELKEKNNELKEENEEL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 33333333333333333
No 160
>PRK02224 chromosome segregation protein; Provisional
Probab=22.96 E-value=3.9e+02 Score=30.95 Aligned_cols=12 Identities=42% Similarity=1.046 Sum_probs=10.1
Q ss_pred hccCCCCCCCCC
Q 046202 102 KNVICPSCGGPP 113 (448)
Q Consensus 102 ~~~~C~~Cgg~~ 113 (448)
....||.||.+.
T Consensus 450 ~~~~Cp~C~r~~ 461 (880)
T PRK02224 450 EAGKCPECGQPV 461 (880)
T ss_pred hcccCCCCCCcC
Confidence 467899999977
No 161
>smart00340 HALZ homeobox associated leucin zipper.
Probab=22.88 E-value=1.6e+02 Score=21.85 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=16.3
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHh
Q 046202 77 RANNSVLRAENERVHCENLAIREAL 101 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~ 101 (448)
+-+...|+.--+.|..||.+++..+
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~ 28 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEV 28 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666677777777666665
No 162
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.84 E-value=3.5e+02 Score=24.78 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=10.7
Q ss_pred HHHHHHHHhHHHHHHHHh
Q 046202 124 QKLQLENSQLKEEHEKVS 141 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~ 141 (448)
.+|..|+..|.+.|..+.
T Consensus 119 ~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 119 EELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666666554
No 163
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=22.81 E-value=73 Score=29.18 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 21 HRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 21 tr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
..+|+.|...|...++ . ....++|..+|++...|+.|.++.+.+.|+
T Consensus 5 ~~Lt~rqreVL~lr~~-G-----lTq~EIAe~LGiS~~tVs~ie~ra~kkLr~ 51 (141)
T PRK03975 5 SFLTERQIEVLRLRER-G-----LTQQEIADILGTSRANVSSIEKRARENIEK 51 (141)
T ss_pred cCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999988432 2 345689999999999999887755544444
No 164
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=22.68 E-value=2.5e+02 Score=28.84 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=10.5
Q ss_pred HHHHHHHHhHHHHHHHHh
Q 046202 124 QKLQLENSQLKEEHEKVS 141 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~ 141 (448)
+-|..+|.+||++++++.
T Consensus 258 ~~Le~rN~~LK~qa~~le 275 (294)
T KOG4571|consen 258 EGLEKRNEELKDQASELE 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666666655543
No 165
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.54 E-value=90 Score=27.00 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=23.9
Q ss_pred eeeeeccccchHHhHHhHHhhhHHHHHhhHHHHHhHHHHHHHh
Q 046202 59 QIKFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREAL 101 (448)
Q Consensus 59 QVkvWFQNRRaK~Kr~~~r~e~~~L~~ene~L~~en~~l~~a~ 101 (448)
+...||++.-- .+-...+++...+++++++++.+|..|+..+
T Consensus 16 ~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 16 QYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568865421 1112234455666777777777777666665
No 166
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.37 E-value=2.3e+02 Score=24.42 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=6.9
Q ss_pred HHHHHHHhHHHHHHHH
Q 046202 125 KLQLENSQLKEEHEKV 140 (448)
Q Consensus 125 ~L~~ENa~Lk~el~r~ 140 (448)
+|..+|+.|++|++++
T Consensus 45 ~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 45 KLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 167
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=22.08 E-value=26 Score=27.58 Aligned_cols=19 Identities=21% Similarity=0.649 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCcceeeee
Q 046202 45 QRRQLSKELGLDLKQIKFW 63 (448)
Q Consensus 45 ~R~~LA~~LgLs~rQVkvW 63 (448)
.-.+||.+||+++.+|+.|
T Consensus 24 ~lkdIA~~Lgvs~~tIr~W 42 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIRKW 42 (60)
T ss_pred cHHHHHHHHCCCHHHHHHH
Confidence 4568999999999999988
No 168
>PRK00118 putative DNA-binding protein; Validated
Probab=21.94 E-value=1.6e+02 Score=25.52 Aligned_cols=47 Identities=11% Similarity=0.122 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 22 r~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
.+++.|...+...|... ..-.++|..+|+++..|..|...-|.+.|.
T Consensus 17 ~L~ekqRevl~L~y~eg-----~S~~EIAe~lGIS~~TV~r~L~RArkkLr~ 63 (104)
T PRK00118 17 LLTEKQRNYMELYYLDD-----YSLGEIAEEFNVSRQAVYDNIKRTEKLLED 63 (104)
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46777777776665543 245679999999999999888765555554
No 169
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.84 E-value=1.7e+02 Score=32.76 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=41.5
Q ss_pred ccccchHHhHHhHHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHH
Q 046202 64 FQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHE 138 (448)
Q Consensus 64 FQNRRaK~Kr~~~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~ 138 (448)
-|.+|-|.--+.-+-....+-+++..|..||..+++.+.+.. ..++ +-.-|+.|+.||.+|..
T Consensus 149 ~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR----------~sQV--EyEglkheikRleEe~e 211 (772)
T KOG0999|consen 149 DQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLR----------QSQV--EYEGLKHEIKRLEEETE 211 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHh----------hhhh--hhhHHHHHHHHHHHHHH
Confidence 355555555555555567788899999999999999985432 1222 33347777777777654
No 170
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=21.54 E-value=90 Score=29.72 Aligned_cols=43 Identities=28% Similarity=0.526 Sum_probs=25.3
Q ss_pred HHHHHhhc-cCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHH
Q 046202 96 AIREALKN-VICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEK 139 (448)
Q Consensus 96 ~l~~a~~~-~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r 139 (448)
.+.+|+.. -.||.||+.. ...|.+-.-..|..+-.+|++++.+
T Consensus 124 sfdeA~~~~F~Cp~Cg~~L-~~~d~s~~i~~l~~~i~~l~~~l~~ 167 (176)
T COG1675 124 SFDEAMELGFTCPKCGEDL-EEYDSSEEIEELESELDELEEELER 167 (176)
T ss_pred cHHHHHHhCCCCCCCCchh-hhccchHHHHHHHHHHHHHHHHHhc
Confidence 34444433 5799999987 5445444445555555555555554
No 171
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.30 E-value=1.9e+02 Score=25.28 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=28.3
Q ss_pred CCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccc
Q 046202 17 KITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKR 68 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 68 (448)
...+..|+.+++..|. .....+.+|++-.+|+-.+....
T Consensus 33 ~~gyR~Y~~~~l~~l~-------------~I~~lr~~G~sL~eI~~~l~~~~ 71 (126)
T cd04783 33 EGGYRRYPEETVTRLR-------------FIKRAQELGFTLDEIAELLELDD 71 (126)
T ss_pred CCCCeecCHHHHHHHH-------------HHHHHHHcCCCHHHHHHHHhccc
Confidence 3456679999999884 34456788888888888776543
No 172
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=21.29 E-value=45 Score=16.87 Aligned_cols=9 Identities=22% Similarity=0.360 Sum_probs=6.5
Q ss_pred ceeeeCCCC
Q 046202 379 FMIQDMTNG 387 (448)
Q Consensus 379 clIq~~~ng 387 (448)
|+||.+|-|
T Consensus 1 C~i~nCP~G 9 (9)
T PF00220_consen 1 CYIRNCPIG 9 (9)
T ss_pred CccccCCCC
Confidence 678877755
No 173
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=21.03 E-value=29 Score=25.02 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeee
Q 046202 20 CHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFW 63 (448)
Q Consensus 20 rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvW 63 (448)
++.+|.+|...++..++.. ....++|+.+|.++..|..+
T Consensus 2 ~~~Lt~~eR~~I~~l~~~G-----~s~~~IA~~lg~s~sTV~re 40 (44)
T PF13936_consen 2 YKHLTPEERNQIEALLEQG-----MSIREIAKRLGRSRSTVSRE 40 (44)
T ss_dssp ----------HHHHHHCS--------HHHHHHHTT--HHHHHHH
T ss_pred ccchhhhHHHHHHHHHHcC-----CCHHHHHHHHCcCcHHHHHH
Confidence 4578999999999887643 44567999999988776544
No 174
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.90 E-value=2.4e+02 Score=22.63 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhh
Q 046202 83 LRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSN 142 (448)
Q Consensus 83 L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~ 142 (448)
.+.....+..+...++.+. .++..||..|+.|+.++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~----------------------~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEI----------------------DKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHcC
No 175
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.21 E-value=3.8e+02 Score=19.99 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=9.9
Q ss_pred HHHHHHHHhHHHHHHHH
Q 046202 124 QKLQLENSQLKEEHEKV 140 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~ 140 (448)
+.|..+|..|++++..+
T Consensus 35 ~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 35 QELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666665544
No 176
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.12 E-value=2.1e+02 Score=24.91 Aligned_cols=13 Identities=46% Similarity=0.506 Sum_probs=6.2
Q ss_pred HHHHHHHHhHHHH
Q 046202 124 QKLQLENSQLKEE 136 (448)
Q Consensus 124 ~~L~~ENa~Lk~e 136 (448)
.+|++||+-||+-
T Consensus 88 ~~L~~E~diLKKa 100 (121)
T PRK09413 88 GKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555443
Done!