Query 046202
Match_columns 448
No_of_seqs 324 out of 1553
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 2.3E-20 7.8E-25 177.3 15.8 200 203-435 20-229 (231)
2 3a01_A Homeodomain-containing 99.7 1.5E-17 5.3E-22 138.7 3.4 78 11-88 12-89 (93)
3 2da3_A Alpha-fetoprotein enhan 99.7 2.4E-17 8.1E-22 133.1 3.7 65 11-75 12-76 (80)
4 2cue_A Paired box protein PAX6 99.7 6.2E-17 2.1E-21 131.2 5.1 66 12-77 3-68 (80)
5 1nk2_P Homeobox protein VND; h 99.7 6.5E-17 2.2E-21 130.1 5.1 67 12-78 5-71 (77)
6 2dmq_A LIM/homeobox protein LH 99.6 4.5E-17 1.6E-21 131.7 4.0 66 13-78 4-69 (80)
7 2dmt_A Homeobox protein BARH-l 99.6 6.1E-17 2.1E-21 131.2 4.7 65 11-75 12-76 (80)
8 2dms_A Homeobox protein OTX2; 99.6 4.3E-17 1.5E-21 132.0 3.0 65 12-76 3-67 (80)
9 2dmu_A Homeobox protein goosec 99.6 5.9E-17 2E-21 127.9 3.7 63 13-75 4-66 (70)
10 2vi6_A Homeobox protein nanog; 99.6 3.5E-17 1.2E-21 126.3 2.1 60 15-74 2-61 (62)
11 2cra_A Homeobox protein HOX-B1 99.6 5.2E-17 1.8E-21 128.3 3.1 63 13-75 4-66 (70)
12 2h1k_A IPF-1, pancreatic and d 99.6 6.6E-17 2.3E-21 125.2 3.3 60 15-74 2-61 (63)
13 2e1o_A Homeobox protein PRH; D 99.6 9.3E-17 3.2E-21 126.8 4.1 63 13-75 4-66 (70)
14 1zq3_P PRD-4, homeotic bicoid 99.6 8.9E-17 3.1E-21 126.4 3.8 63 16-78 2-64 (68)
15 2da2_A Alpha-fetoprotein enhan 99.6 5.9E-17 2E-21 127.8 2.5 64 12-75 3-66 (70)
16 1fjl_A Paired protein; DNA-bin 99.6 1.2E-16 4.2E-21 129.6 4.2 64 12-75 14-77 (81)
17 2hdd_A Protein (engrailed home 99.6 7.5E-17 2.6E-21 124.0 2.8 58 16-73 3-60 (61)
18 1puf_A HOX-1.7, homeobox prote 99.6 1.9E-16 6.6E-21 127.3 4.9 66 12-77 9-74 (77)
19 2kt0_A Nanog, homeobox protein 99.6 1E-16 3.4E-21 130.8 3.2 64 12-75 18-81 (84)
20 2djn_A Homeobox protein DLX-5; 99.6 8.8E-17 3E-21 127.0 2.8 63 12-74 3-65 (70)
21 1ig7_A Homeotic protein MSX-1; 99.6 1.3E-16 4.5E-21 121.2 3.4 57 17-73 1-57 (58)
22 2da1_A Alpha-fetoprotein enhan 99.6 1.1E-16 3.7E-21 126.3 3.0 64 12-75 3-66 (70)
23 1wh5_A ZF-HD homeobox family p 99.6 1.4E-16 4.7E-21 129.6 3.7 62 12-73 13-78 (80)
24 1bw5_A ISL-1HD, insulin gene e 99.6 9.2E-17 3.2E-21 125.4 2.0 60 15-74 2-61 (66)
25 1wh7_A ZF-HD homeobox family p 99.6 1.7E-16 5.7E-21 129.3 3.2 62 11-73 12-78 (80)
26 1ahd_P Antennapedia protein mu 99.6 1.5E-16 5.2E-21 125.1 2.8 61 16-76 2-62 (68)
27 1ftt_A TTF-1 HD, thyroid trans 99.6 1.1E-16 3.9E-21 125.7 2.1 61 16-76 2-62 (68)
28 2l7z_A Homeobox protein HOX-A1 99.6 2.5E-16 8.4E-21 125.6 4.0 63 13-75 4-66 (73)
29 1yz8_P Pituitary homeobox 2; D 99.6 9.4E-17 3.2E-21 126.1 1.3 62 15-76 2-63 (68)
30 1jgg_A Segmentation protein EV 99.6 2.1E-16 7.1E-21 121.1 3.0 58 17-74 2-59 (60)
31 2da4_A Hypothetical protein DK 99.6 1.8E-16 6.2E-21 128.3 2.7 63 12-74 4-70 (80)
32 2m0c_A Homeobox protein arista 99.6 2.3E-16 8E-21 125.6 3.0 66 11-76 4-69 (75)
33 1b8i_A Ultrabithorax, protein 99.6 2E-16 6.7E-21 128.7 2.4 63 13-75 17-79 (81)
34 3rkq_A Homeobox protein NKX-2. 99.6 3.1E-16 1.1E-20 118.7 3.3 57 16-72 2-58 (58)
35 2r5y_A Homeotic protein sex co 99.6 2E-16 6.8E-21 130.4 2.1 63 12-74 24-86 (88)
36 2da5_A Zinc fingers and homeob 99.6 2.8E-16 9.7E-21 125.9 2.9 59 18-76 9-67 (75)
37 2k40_A Homeobox expressed in E 99.6 2.6E-16 8.9E-21 123.2 2.2 60 17-76 2-61 (67)
38 1akh_A Protein (mating-type pr 99.6 2.5E-16 8.7E-21 120.8 2.1 59 14-72 3-61 (61)
39 3a02_A Homeobox protein arista 99.6 2.9E-16 9.9E-21 120.3 2.4 57 19-75 2-58 (60)
40 3a03_A T-cell leukemia homeobo 99.6 3.9E-16 1.3E-20 118.2 2.7 54 21-74 2-55 (56)
41 1uhs_A HOP, homeodomain only p 99.6 6.3E-16 2.2E-20 122.7 4.0 59 17-75 2-61 (72)
42 2hi3_A Homeodomain-only protei 99.6 7.7E-16 2.6E-20 122.6 4.1 59 17-75 3-62 (73)
43 1b72_A Protein (homeobox prote 99.6 6.4E-16 2.2E-20 129.7 3.2 64 13-76 31-94 (97)
44 3nar_A ZHX1, zinc fingers and 99.6 6.6E-16 2.3E-20 129.4 3.3 65 13-77 22-86 (96)
45 1x2n_A Homeobox protein pknox1 99.6 1E-15 3.5E-20 121.7 3.5 63 13-75 4-69 (73)
46 2dn0_A Zinc fingers and homeob 99.6 5.6E-16 1.9E-20 124.4 1.7 61 15-75 7-67 (76)
47 2ly9_A Zinc fingers and homeob 99.6 1.1E-15 3.9E-20 121.6 3.5 62 15-76 5-66 (74)
48 2cuf_A FLJ21616 protein; homeo 99.6 1.3E-15 4.4E-20 127.3 3.7 65 12-76 3-82 (95)
49 2ecc_A Homeobox and leucine zi 99.6 9.7E-16 3.3E-20 123.6 2.9 56 20-75 7-62 (76)
50 1puf_B PRE-B-cell leukemia tra 99.6 1.3E-15 4.6E-20 121.0 3.4 62 17-78 2-66 (73)
51 2ecb_A Zinc fingers and homeob 99.5 1.5E-15 5.2E-20 126.0 2.3 56 20-75 15-70 (89)
52 1du6_A PBX1, homeobox protein 99.5 1.6E-15 5.6E-20 117.5 2.2 58 16-73 3-63 (64)
53 1b72_B Protein (PBX1); homeodo 99.5 3.2E-15 1.1E-19 122.6 3.9 61 17-77 2-65 (87)
54 2dmn_A Homeobox protein TGIF2L 99.5 3.2E-15 1.1E-19 122.1 3.7 64 13-76 4-70 (83)
55 1k61_A Mating-type protein alp 99.5 3.1E-15 1.1E-19 114.5 2.8 56 19-74 1-59 (60)
56 2cqx_A LAG1 longevity assuranc 99.5 2.5E-15 8.5E-20 119.8 1.1 58 17-74 9-67 (72)
57 1au7_A Protein PIT-1, GHF-1; c 99.5 3.6E-15 1.2E-19 134.1 2.0 63 12-74 83-145 (146)
58 1mnm_C Protein (MAT alpha-2 tr 99.5 7E-15 2.4E-19 120.8 3.5 60 14-73 25-87 (87)
59 2dmp_A Zinc fingers and homeob 99.5 4.5E-15 1.5E-19 122.9 2.3 59 18-76 15-73 (89)
60 1le8_B Mating-type protein alp 99.5 3.8E-15 1.3E-19 121.6 1.8 59 17-75 3-64 (83)
61 1e3o_C Octamer-binding transcr 99.5 4.5E-15 1.5E-19 135.3 2.1 62 13-74 98-159 (160)
62 3d1n_I POU domain, class 6, tr 99.5 1E-14 3.5E-19 131.6 3.6 62 12-73 89-150 (151)
63 2da6_A Hepatocyte nuclear fact 99.5 2E-14 6.7E-19 122.0 5.1 64 13-76 3-87 (102)
64 2xsd_C POU domain, class 3, tr 99.5 4.9E-15 1.7E-19 135.8 1.2 64 13-76 96-159 (164)
65 2l9r_A Homeobox protein NKX-3. 99.5 3.7E-15 1.3E-19 118.1 0.1 56 21-76 9-64 (69)
66 1wi3_A DNA-binding protein SAT 99.5 1.5E-14 5.1E-19 113.8 3.1 60 13-72 4-64 (71)
67 3nau_A Zinc fingers and homeob 99.5 1.4E-14 4.9E-19 113.5 2.5 52 23-74 11-62 (66)
68 1lfb_A Liver transcription fac 99.5 7.7E-15 2.6E-19 124.0 0.9 65 12-76 5-90 (99)
69 1x2m_A LAG1 longevity assuranc 99.4 1.3E-14 4.3E-19 113.4 1.1 50 24-73 8-58 (64)
70 3l1p_A POU domain, class 5, tr 99.4 2.9E-14 1E-18 129.3 2.7 61 14-74 94-154 (155)
71 2e19_A Transcription factor 8; 99.4 3.5E-14 1.2E-18 110.7 2.1 52 22-73 9-60 (64)
72 2d5v_A Hepatocyte nuclear fact 99.4 3.7E-14 1.3E-18 129.3 1.8 64 12-75 93-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.4 9.7E-14 3.3E-18 109.0 1.8 58 22-79 4-64 (67)
74 3p0l_A Steroidogenic acute reg 99.2 6.4E-11 2.2E-15 111.7 14.0 192 207-433 12-213 (221)
75 1em2_A MLN64 protein; beta bar 99.2 6.1E-11 2.1E-15 112.2 12.6 201 199-435 16-226 (229)
76 1ic8_A Hepatocyte nuclear fact 99.2 1.2E-12 4.2E-17 122.9 -0.7 61 13-73 112-193 (194)
77 2pso_A STAR-related lipid tran 99.1 1.8E-10 6.1E-15 110.7 11.7 170 210-409 33-206 (237)
78 2lk2_A Homeobox protein TGIF1; 99.1 1.5E-11 5.1E-16 101.9 2.8 58 20-77 9-69 (89)
79 2h8r_A Hepatocyte nuclear fact 99.1 2.8E-11 9.5E-16 115.4 2.3 59 13-71 139-218 (221)
80 2da7_A Zinc finger homeobox pr 99.0 5.2E-11 1.8E-15 94.1 1.9 46 25-70 14-59 (71)
81 1jss_A Stard4, cholesterol-reg 99.0 1.6E-09 5.4E-14 102.5 10.5 149 267-433 68-222 (224)
82 1mh3_A Maltose binding-A1 home 98.9 1.1E-10 3.7E-15 118.0 1.1 55 18-72 367-421 (421)
83 1ln1_A PC-TP, phosphatidylchol 98.9 1.3E-08 4.4E-13 94.6 11.6 150 266-435 52-210 (214)
84 3fo5_A Thioesterase, adipose a 98.8 1.3E-08 4.5E-13 99.3 10.5 125 269-407 91-221 (258)
85 3qsz_A STAR-related lipid tran 98.6 2.3E-07 7.8E-12 84.7 12.1 152 267-435 28-180 (189)
86 2e3n_A Lipid-transfer protein 98.4 1.4E-06 4.8E-11 83.5 10.9 150 268-435 75-247 (255)
87 2nzz_A Penetratin conjugated G 98.3 3.6E-08 1.2E-12 68.7 -1.5 22 58-79 1-22 (37)
88 2d4r_A Hypothetical protein TT 95.7 0.024 8.2E-07 47.0 7.2 141 270-436 6-146 (147)
89 2jn6_A Protein CGL2762, transp 88.2 0.092 3.1E-06 42.4 -0.0 76 21-99 4-87 (97)
90 2ys9_A Homeobox and leucine zi 87.7 0.15 5.1E-06 40.1 0.9 44 23-66 13-56 (70)
91 1t17_A Conserved hypothetical 87.2 1.2 4E-05 38.0 6.5 141 269-435 5-145 (148)
92 1ci6_A Transcription factor AT 86.3 1.7 5.7E-05 33.2 6.1 41 76-138 21-61 (63)
93 1t2k_D Cyclic-AMP-dependent tr 85.4 2 6.7E-05 32.3 6.1 39 77-137 21-59 (61)
94 2jee_A YIIU; FTSZ, septum, coi 85.4 1.9 6.7E-05 34.7 6.3 26 124-149 51-76 (81)
95 3tfz_A Cyclase; helix-GRIP, BE 84.3 5.7 0.00019 34.9 9.7 145 269-438 8-163 (172)
96 3tl1_A WHIE ORF VI, polyketide 84.1 7.2 0.00025 34.4 10.3 142 269-438 6-150 (159)
97 2wt7_B Transcription factor MA 84.0 1.9 6.6E-05 35.4 5.8 68 54-143 17-84 (90)
98 1hjb_A Ccaat/enhancer binding 83.2 2.3 7.7E-05 34.7 5.9 22 80-101 38-59 (87)
99 3tvq_A Multifunctional cyclase 81.1 12 0.00042 33.2 10.7 145 269-439 6-151 (169)
100 3p9v_A Uncharacterized protein 80.7 11 0.00037 32.8 10.0 140 270-433 11-150 (161)
101 1jnm_A Proto-oncogene C-JUN; B 80.5 2 7E-05 32.4 4.4 39 77-137 21-59 (62)
102 2wt7_A Proto-oncogene protein 75.8 7 0.00024 29.5 6.3 39 77-137 22-60 (63)
103 1l8d_A DNA double-strand break 75.1 7.5 0.00026 32.1 6.9 11 103-113 47-57 (112)
104 2j5u_A MREC protein; bacterial 74.7 1.6 5.3E-05 42.1 2.9 38 82-138 23-60 (255)
105 1gu4_A CAAT/enhancer binding p 73.8 5.2 0.00018 31.9 5.2 13 126-138 48-60 (78)
106 3m91_A Proteasome-associated A 70.9 12 0.0004 27.5 6.1 40 80-141 11-50 (51)
107 1hjb_A Ccaat/enhancer binding 60.7 34 0.0012 27.7 7.6 25 77-101 21-45 (87)
108 2pcs_A Conserved protein; stru 59.0 79 0.0027 26.5 11.9 118 271-413 8-127 (162)
109 3ra3_B P2F; coiled coil domain 55.5 8.9 0.0003 24.1 2.5 18 124-141 3-20 (28)
110 1gu4_A CAAT/enhancer binding p 54.2 53 0.0018 25.9 7.6 22 80-101 38-59 (78)
111 3s9g_A Protein hexim1; cyclin 53.9 13 0.00043 31.0 4.0 56 76-139 35-90 (104)
112 3m9b_A Proteasome-associated A 53.7 16 0.00054 35.2 5.3 40 80-141 56-95 (251)
113 1hlv_A CENP-B, major centromer 49.9 9.1 0.00031 31.8 2.7 48 19-69 4-51 (131)
114 1gd2_E Transcription factor PA 49.8 27 0.00092 27.1 5.1 17 126-142 48-64 (70)
115 2yy0_A C-MYC-binding protein; 49.3 24 0.00082 25.9 4.5 18 123-140 21-38 (53)
116 2glo_A Brinker CG9653-PA; prot 46.6 5.2 0.00018 29.1 0.5 44 21-65 4-47 (59)
117 3he5_B Synzip2; heterodimeric 44.9 73 0.0025 22.5 6.2 22 123-144 26-47 (52)
118 2wvr_A Geminin; DNA replicatio 43.2 57 0.002 30.4 7.1 50 84-155 114-166 (209)
119 1wlq_A Geminin; coiled-coil; 2 42.9 84 0.0029 25.3 7.1 17 85-101 38-54 (83)
120 3a5t_A Transcription factor MA 42.8 1.2 4E-05 37.8 -3.9 66 54-141 27-92 (107)
121 1go4_E MAD1 (mitotic arrest de 42.0 93 0.0032 25.8 7.5 70 77-146 18-93 (100)
122 1t6f_A Geminin; coiled-coil, c 41.5 34 0.0012 23.3 3.8 16 85-100 7-22 (37)
123 1uii_A Geminin; human, DNA rep 41.4 65 0.0022 25.9 6.2 22 124-145 56-77 (83)
124 1gd2_E Transcription factor PA 40.7 36 0.0012 26.4 4.6 16 124-139 53-68 (70)
125 2elh_A CG11849-PA, LD40883P; s 39.7 14 0.00048 28.9 2.1 43 17-64 17-59 (87)
126 3a2a_A Voltage-gated hydrogen 37.6 76 0.0026 23.6 5.5 23 124-146 28-50 (58)
127 1tc3_C Protein (TC3 transposas 33.2 21 0.00073 23.4 2.0 40 22-66 5-44 (51)
128 1jko_C HIN recombinase, DNA-in 32.6 12 0.00039 25.3 0.5 43 22-69 5-47 (52)
129 1deb_A APC protein, adenomatou 31.7 46 0.0016 24.3 3.5 21 124-144 13-33 (54)
130 3m48_A General control protein 29.9 48 0.0016 22.1 3.1 21 124-144 10-30 (33)
131 3p51_A Uncharacterized protein 29.9 1.4E+02 0.0048 25.9 7.3 112 270-401 6-118 (160)
132 2zxx_A Geminin; coiled-coil, c 29.7 1.5E+02 0.0052 23.5 6.6 38 84-143 33-70 (79)
133 1iuf_A Centromere ABP1 protein 29.1 37 0.0013 29.1 3.2 50 17-66 6-59 (144)
134 1wlq_A Geminin; coiled-coil; 2 28.5 1.3E+02 0.0045 24.1 6.0 21 124-144 48-68 (83)
135 2w6a_A ARF GTPase-activating p 28.1 1.1E+02 0.0038 23.1 5.2 36 78-135 27-62 (63)
136 2oa5_A Hypothetical protein BQ 27.9 65 0.0022 27.2 4.4 30 79-110 9-38 (110)
137 3oja_B Anopheles plasmodium-re 27.9 96 0.0033 32.1 6.8 19 124-142 561-579 (597)
138 3hug_A RNA polymerase sigma fa 27.3 25 0.00085 27.5 1.7 47 22-73 37-83 (92)
139 2oa5_A Hypothetical protein BQ 27.2 18 0.00061 30.6 0.8 25 115-139 9-33 (110)
140 1s7o_A Hypothetical UPF0122 pr 25.7 53 0.0018 27.2 3.5 48 22-74 22-69 (113)
141 1a93_B MAX protein, coiled coi 24.9 81 0.0028 21.2 3.5 24 78-101 7-30 (34)
142 2dgc_A Protein (GCN4); basic d 23.7 82 0.0028 23.7 3.9 19 124-142 40-58 (63)
143 3oja_A Leucine-rich immune mol 23.7 1.8E+02 0.006 29.5 7.7 23 120-142 441-463 (487)
144 2ns9_A Hypothetical protein AP 23.4 3E+02 0.01 22.3 8.5 28 271-298 18-45 (157)
145 3lph_A Protein REV; helix-loop 23.0 31 0.001 27.0 1.3 36 28-77 18-53 (72)
146 1deb_A APC protein, adenomatou 22.0 2.3E+02 0.0078 20.7 5.7 46 81-141 6-51 (54)
147 1xsv_A Hypothetical UPF0122 pr 20.7 67 0.0023 26.4 3.2 48 22-74 25-72 (113)
148 1p4w_A RCSB; solution structur 20.0 47 0.0016 26.9 2.0 42 20-67 32-73 (99)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=177.31 Aligned_cols=200 Identities=15% Similarity=0.148 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHH
Q 046202 203 EQSLMMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLV 282 (448)
Q Consensus 203 ~k~~~~~lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lv 282 (448)
+++.+.++|++||+||+++++. +..|....+. ++.++|.+.. .+....+.|..|+|.+++.+|+
T Consensus 20 ~~~~y~~~a~~~~~~~l~~~~~-~~~W~~~~~~-----------~gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~ 83 (231)
T 2r55_A 20 FQSMAAQMSEAVAEKMLQYRRD-TAGWKICREG-----------NGVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVW 83 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC-CSSCEEEECC-----------SSEEEEEEEC----SSSSSEEEEEEEEESSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcC-CCCCEEEEeC-----------CCEEEEEEcc----CCCCCcEEEEEEEECCCHHHHH
Confidence 4678999999999999999965 4689764321 1223343322 1223478899999999999999
Q ss_pred HHhcC-----hhhhhhhcccccccceEeEEecCCCCCCCCCceeeehh-hhhccCccccCceeEEEEeeeeecCCeEEEE
Q 046202 283 EMLLD-----SDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHE-QMHILSPLVSPREYYFLRHCQQIELGLWVIV 356 (448)
Q Consensus 283 e~lmD-----~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~-e~~v~SPlvp~Re~~flRyc~q~~~g~w~vv 356 (448)
+.||+ ..+|-..|... ++|+.|+.. -.++|. ....++++|++|||.++||+++.++|.|+|+
T Consensus 84 ~~l~~~d~~~r~~Wd~~~~~~----~vle~i~~~--------~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~ 151 (231)
T 2r55_A 84 DCVKPAVGGLRVKWDENVTGF----EIIQSITDT--------LCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSN 151 (231)
T ss_dssp HHHCC--CCSHHHHCTTCSEE----EEEEECSSS--------EEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEE
T ss_pred HHHHhhCcchhhhhcccccee----EEEEEcCCC--------EEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEE
Confidence 99977 88998887644 888888631 123442 2234567999999999999999999999999
Q ss_pred EEecCCCC--CCCCCcccccCCccceeeeCC--CCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHHH
Q 046202 357 DVSYEWPK--DNISSSHCWRLPSGFMIQDMT--NGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTC 432 (448)
Q Consensus 357 DvS~d~~~--~~~~~~~~~r~PSGclIq~~~--ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~c 432 (448)
..|++... +...++|+..++|||+|++++ +|.|+|||+.|++..-+ +| +.+++++++.++-+|++.|+++|
T Consensus 152 ~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP---~~lvn~~~~~~~~~~~~~Lr~~~ 226 (231)
T 2r55_A 152 ATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY--LP---QNVVDSFFPRSMTRFYANLQKAV 226 (231)
T ss_dssp EEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS--CC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC--cc---HHHHHHHHhHhHHHHHHHHHHHH
Confidence 99998532 112379999999999999998 78999999999998866 33 57888999999999999999999
Q ss_pred HHH
Q 046202 433 ERL 435 (448)
Q Consensus 433 er~ 435 (448)
+.+
T Consensus 227 ~~~ 229 (231)
T 2r55_A 227 KQF 229 (231)
T ss_dssp HGG
T ss_pred HHh
Confidence 853
No 2
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.67 E-value=1.5e-17 Score=138.73 Aligned_cols=78 Identities=27% Similarity=0.341 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHhhhHHHHHhhH
Q 046202 11 NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERANNSVLRAENE 88 (448)
Q Consensus 11 ~~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~~~L~~ene 88 (448)
..++++|++|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++....+...+++.+.
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~~ 89 (93)
T 3a01_A 12 RTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANR 89 (93)
T ss_dssp SCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 345667888999999999999999999999999999999999999999999999999999999877666555554443
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-17 Score=133.09 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 11 NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 11 ~~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
..+.++|+.|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|+++
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 12 EEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 45667788899999999999999999999999999999999999999999999999999999853
No 4
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=6.2e-17 Score=131.16 Aligned_cols=66 Identities=27% Similarity=0.453 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHH
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNER 77 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 77 (448)
+..+++++|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.+.
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 345677888899999999999999999999999999999999999999999999999999996543
No 5
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.65 E-value=6.5e-17 Score=130.12 Aligned_cols=67 Identities=28% Similarity=0.344 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHh
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERA 78 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 78 (448)
.+++++++|++||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+.....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 4556778889999999999999999999999999999999999999999999999999999865543
No 6
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.5e-17 Score=131.66 Aligned_cols=66 Identities=27% Similarity=0.515 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHh
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERA 78 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 78 (448)
..++|++|++||.+|+..||..|..++||+..++..||.++||+++||++||||||+|+|++..+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 455778889999999999999999999999999999999999999999999999999999965443
No 7
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.1e-17 Score=131.19 Aligned_cols=65 Identities=29% Similarity=0.409 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 11 NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 11 ~~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
....+++++|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 34566778889999999999999999999999999999999999999999999999999999853
No 8
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=4.3e-17 Score=132.02 Aligned_cols=65 Identities=26% Similarity=0.498 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
++.++|++|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 34567888899999999999999999999999999999999999999999999999999998654
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.9e-17 Score=127.90 Aligned_cols=63 Identities=25% Similarity=0.534 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
..+++++|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 345677888999999999999999999999999999999999999999999999999999853
No 10
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.64 E-value=3.5e-17 Score=126.26 Aligned_cols=60 Identities=28% Similarity=0.335 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 15 KGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 15 k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
+++++|+.||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 457788899999999999999999999999999999999999999999999999999985
No 11
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=5.2e-17 Score=128.32 Aligned_cols=63 Identities=25% Similarity=0.429 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
..++|++|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 456678888999999999999999999999999999999999999999999999999999853
No 12
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.63 E-value=6.6e-17 Score=125.16 Aligned_cols=60 Identities=32% Similarity=0.347 Sum_probs=55.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 15 KGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 15 k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
++|++|+.||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 357788899999999999999999999999999999999999999999999999999985
No 13
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=9.3e-17 Score=126.84 Aligned_cols=63 Identities=30% Similarity=0.414 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
..+++++|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 345677788999999999999999999999999999999999999999999999999999853
No 14
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.63 E-value=8.9e-17 Score=126.35 Aligned_cols=63 Identities=30% Similarity=0.431 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHh
Q 046202 16 GKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERA 78 (448)
Q Consensus 16 ~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 78 (448)
+|+.|+.||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 577888999999999999999999999999999999999999999999999999999976544
No 15
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.63 E-value=5.9e-17 Score=127.77 Aligned_cols=64 Identities=31% Similarity=0.534 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
+..+++++|++||.+|+..||..|..++||+..++..||.++||+++||++||||||+|+|++.
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 3456778888999999999999999999999999999999999999999999999999999853
No 16
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.63 E-value=1.2e-16 Score=129.63 Aligned_cols=64 Identities=27% Similarity=0.469 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
.++++++.|+.||..|+..||..|..++||+..++..||.++||+++||++||||||+|+|++.
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3556778899999999999999999999999999999999999999999999999999999864
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.63 E-value=7.5e-17 Score=123.99 Aligned_cols=58 Identities=38% Similarity=0.557 Sum_probs=53.0
Q ss_pred CCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 16 GKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 16 ~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
+|+.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5778889999999999999999999999999999999999999999999999999986
No 18
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.62 E-value=1.9e-16 Score=127.34 Aligned_cols=66 Identities=27% Similarity=0.344 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHH
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNER 77 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 77 (448)
..++.+++|+.||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+..+.
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 345567788899999999999999999999999999999999999999999999999999997543
No 19
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=1e-16 Score=130.79 Aligned_cols=64 Identities=30% Similarity=0.348 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
.+.++++.|+.||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|+.+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456778899999999999999999999999999999999999999999999999999999854
No 20
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.8e-17 Score=126.99 Aligned_cols=63 Identities=30% Similarity=0.474 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
+..+++++|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 345677888999999999999999999999999999999999999999999999999999985
No 21
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=1.3e-16 Score=121.22 Aligned_cols=57 Identities=32% Similarity=0.459 Sum_probs=54.7
Q ss_pred CCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 17 KITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
|++|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467789999999999999999999999999999999999999999999999999987
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=126.27 Aligned_cols=64 Identities=30% Similarity=0.492 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
+..+++++|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 3456778889999999999999999999999999999999999999999999999999999853
No 23
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.62 E-value=1.4e-16 Score=129.62 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhc----CCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKD----CPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~----~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
...++|++|+.||.+|+..||..|+. ++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 34567888899999999999999999 999999999999999999999999999999999875
No 24
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.61 E-value=9.2e-17 Score=125.37 Aligned_cols=60 Identities=32% Similarity=0.508 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 15 KGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 15 k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
++|++|+.||.+|+..||..|..++||+..++..||..+||+++||++||||||+|+|++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 467888999999999999999999999999999999999999999999999999999885
No 25
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.61 E-value=1.7e-16 Score=129.25 Aligned_cols=62 Identities=19% Similarity=0.317 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhHhc-----CCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 11 NSQNKGKITCHRHTTHQIQTLEAFFKD-----CPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 11 ~~~~k~Kr~rtr~T~eQl~~LE~~F~~-----~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
....++|+.|+.||.+|+..|| .|.. ++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 4456678889999999999999 7999 999999999999999999999999999999999875
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.61 E-value=1.5e-16 Score=125.14 Aligned_cols=61 Identities=31% Similarity=0.367 Sum_probs=57.6
Q ss_pred CCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 16 GKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 16 ~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
+|+.|+.||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4677889999999999999999999999999999999999999999999999999999653
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.61 E-value=1.1e-16 Score=125.73 Aligned_cols=61 Identities=28% Similarity=0.368 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 16 GKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 16 ~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
+|++|++||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5678889999999999999999999999999999999999999999999999999999654
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.61 E-value=2.5e-16 Score=125.59 Aligned_cols=63 Identities=25% Similarity=0.388 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
..+++++|++||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 345677888999999999999999999999999999999999999999999999999999854
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.60 E-value=9.4e-17 Score=126.14 Aligned_cols=62 Identities=26% Similarity=0.463 Sum_probs=58.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 15 KGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 15 k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
+++++|+.||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 46778889999999999999999999999999999999999999999999999999998654
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.60 E-value=2.1e-16 Score=121.12 Aligned_cols=58 Identities=31% Similarity=0.396 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 17 KITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
|+.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678899999999999999999999999999999999999999999999999999984
No 31
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-16 Score=128.33 Aligned_cols=63 Identities=13% Similarity=0.298 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcC----CCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDC----PHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~----~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
...++|++|+.||.+|+..||..|..+ +||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 445678888999999999999999999 999999999999999999999999999999999984
No 32
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-16 Score=125.61 Aligned_cols=66 Identities=26% Similarity=0.458 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 11 NSQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 11 ~~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
++.+++++.|++||..|+..||..|..++||+..++.+||..+||++.||++||||||+|+|++..
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 345667788899999999999999999999999999999999999999999999999999998543
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.60 E-value=2e-16 Score=128.67 Aligned_cols=63 Identities=27% Similarity=0.341 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
..++|+.|+.||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 345677889999999999999999999999999999999999999999999999999999853
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.59 E-value=3.1e-16 Score=118.68 Aligned_cols=57 Identities=32% Similarity=0.416 Sum_probs=54.2
Q ss_pred CCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHh
Q 046202 16 GKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72 (448)
Q Consensus 16 ~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 72 (448)
+++.|+.||..|+..||..|..++||+..++.+||..+||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 466788999999999999999999999999999999999999999999999999976
No 35
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.59 E-value=2e-16 Score=130.41 Aligned_cols=63 Identities=29% Similarity=0.344 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
...+.|++|+.||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 445677888999999999999999999999999999999999999999999999999999985
No 36
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.8e-16 Score=125.92 Aligned_cols=59 Identities=22% Similarity=0.472 Sum_probs=55.1
Q ss_pred CCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 18 ITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 18 r~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
++|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 45567999999999999999999999999999999999999999999999999998654
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-16 Score=123.15 Aligned_cols=60 Identities=30% Similarity=0.515 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 17 KITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
|++|++||.+|+..||..|..++||+..++..||.++||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 677889999999999999999999999999999999999999999999999999998643
No 38
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.59 E-value=2.5e-16 Score=120.81 Aligned_cols=59 Identities=22% Similarity=0.399 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHh
Q 046202 14 NKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72 (448)
Q Consensus 14 ~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 72 (448)
.+++++|++||.+|+..||..|..++||+..++..||..+||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 35677888999999999999999999999999999999999999999999999999975
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.58 E-value=2.9e-16 Score=120.31 Aligned_cols=57 Identities=32% Similarity=0.547 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 19 TCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 19 ~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 467899999999999999999999999999999999999999999999999999854
No 40
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.58 E-value=3.9e-16 Score=118.19 Aligned_cols=54 Identities=31% Similarity=0.418 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 21 HRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 21 tr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
+.||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 41
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=6.3e-16 Score=122.70 Aligned_cols=59 Identities=24% Similarity=0.373 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 17 KITCHRHTTHQIQTLEAFFKD-CPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
.++|++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 456778999999999999996 99999999999999999999999999999999999854
No 42
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=7.7e-16 Score=122.60 Aligned_cols=59 Identities=25% Similarity=0.392 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 17 KITCHRHTTHQIQTLEAFFKD-CPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
+++|++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567789999999999999995 99999999999999999999999999999999999854
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=6.4e-16 Score=129.65 Aligned_cols=64 Identities=27% Similarity=0.355 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
..+++++|+.||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++..
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 3456788899999999999999999999999999999999999999999999999999998643
No 44
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.57 E-value=6.6e-16 Score=129.41 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHH
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNER 77 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 77 (448)
....+++|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+.+.+
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 34556788899999999999999999999999999999999999999999999999999996533
No 45
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1e-15 Score=121.68 Aligned_cols=63 Identities=22% Similarity=0.428 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKD---CPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
+++++++|++|+.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 4456778889999999999999977 99999999999999999999999999999999999854
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.6e-16 Score=124.35 Aligned_cols=61 Identities=20% Similarity=0.444 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 15 KGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 15 k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
.+++.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 3455678899999999999999999999999999999999999999999999999999854
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-15 Score=121.64 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=57.8
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 15 KGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 15 k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
..++.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+.+.
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 45677889999999999999999999999999999999999999999999999999998643
No 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.3e-15 Score=127.30 Aligned_cols=65 Identities=20% Similarity=0.448 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhC---------------CCcceeeeeccccchHHhHHhH
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELG---------------LDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------Ls~rQVkvWFQNRRaK~Kr~~~ 76 (448)
+..++|+.|+.||..|+..||..|..++||+..+|.+||..|| |++.||++||||||+|+|++..
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3456788889999999999999999999999999999999999 9999999999999999998654
No 49
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=9.7e-16 Score=123.59 Aligned_cols=56 Identities=27% Similarity=0.479 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 20 CHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 20 rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
+.+||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 34699999999999999999999999999999999999999999999999999854
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.55 E-value=1.3e-15 Score=121.01 Aligned_cols=62 Identities=24% Similarity=0.488 Sum_probs=57.5
Q ss_pred CCCCCCCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHh
Q 046202 17 KITCHRHTTHQIQTLEAFF---KDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERA 78 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 78 (448)
|++|++||.+|+..||..| ..++||+..++..||..+||+++||++||||||+|+|++....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 6677899999999999999 8999999999999999999999999999999999999865443
No 51
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=1.5e-15 Score=126.03 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 20 CHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 20 rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
+++||.+|+..||..|..++||+..+|.+||..|||+++||++||||||+|+|++.
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999854
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=1.6e-15 Score=117.47 Aligned_cols=58 Identities=29% Similarity=0.593 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 16 GKITCHRHTTHQIQTLEAFF---KDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 16 ~Kr~rtr~T~eQl~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
++++|++||.+|+..||..| ..++||+..++.+||.++||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46677889999999999999 89999999999999999999999999999999999886
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.53 E-value=3.2e-15 Score=122.56 Aligned_cols=61 Identities=25% Similarity=0.508 Sum_probs=56.3
Q ss_pred CCCCCCCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHH
Q 046202 17 KITCHRHTTHQIQTLEAFF---KDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNER 77 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 77 (448)
|++|++||.+|+..||..| ..++||+..++..||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5677899999999999999 899999999999999999999999999999999999986543
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.52 E-value=3.2e-15 Score=122.14 Aligned_cols=64 Identities=23% Similarity=0.353 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKD---CPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
..++|++|++|+.+|+..|+..|.. ++||+..+|.+||.++||+++||++||||||+|+|+...
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 4456778889999999999999987 599999999999999999999999999999999988543
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.52 E-value=3.1e-15 Score=114.46 Aligned_cols=56 Identities=32% Similarity=0.487 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 19 TCHRHTTHQIQTLEAFFKD---CPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 19 ~rtr~T~eQl~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
++++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 3568999999999999999 9999999999999999999999999999999999873
No 56
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.50 E-value=2.5e-15 Score=119.82 Aligned_cols=58 Identities=29% Similarity=0.488 Sum_probs=53.7
Q ss_pred CCCCCCCCHHHHHHHHHhH-hcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 17 KITCHRHTTHQIQTLEAFF-KDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F-~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
.+++++++.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4455578999999999999 999999999999999999999999999999999999973
No 57
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.50 E-value=3.6e-15 Score=134.13 Aligned_cols=63 Identities=19% Similarity=0.415 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
..+++|++|+.||..|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|++
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 345677789999999999999999999999999999999999999999999999999999984
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.49 E-value=7e-15 Score=120.84 Aligned_cols=60 Identities=30% Similarity=0.458 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 14 NKGKITCHRHTTHQIQTLEAFFKD---CPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 14 ~k~Kr~rtr~T~eQl~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
.+++++|++||.+|+..||..|.. ++||+..++..||..+||+++||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 345667889999999999999999 999999999999999999999999999999999873
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.5e-15 Score=122.86 Aligned_cols=59 Identities=22% Similarity=0.395 Sum_probs=54.2
Q ss_pred CCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 18 ITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 18 r~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
++++++|.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 34456999999999999999999999999999999999999999999999999988543
No 60
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.49 E-value=3.8e-15 Score=121.56 Aligned_cols=59 Identities=29% Similarity=0.437 Sum_probs=54.0
Q ss_pred CCCCCCCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 17 KITCHRHTTHQIQTLEAFFKD---CPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
++++++||.+|+..||..|.. ++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 445667999999999999999 99999999999999999999999999999999999854
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.49 E-value=4.5e-15 Score=135.30 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
.+++||+|+.||..|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 35678889999999999999999999999999999999999999999999999999999984
No 62
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.48 E-value=1e-14 Score=131.63 Aligned_cols=62 Identities=27% Similarity=0.545 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
.+.++||+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34567788899999999999999999999999999999999999999999999999999986
No 63
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2e-14 Score=121.98 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHh---------------------CCCcceeeeeccccchHH
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKEL---------------------GLDLKQIKFWFQNKRTQT 71 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~L---------------------gLs~rQVkvWFQNRRaK~ 71 (448)
.+++|+.|+.|++.|+..||..|..++||+..+|++||.+| ++++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45677888999999999999999999999999999999999 799999999999999999
Q ss_pred hHHhH
Q 046202 72 KAQNE 76 (448)
Q Consensus 72 Kr~~~ 76 (448)
|+++.
T Consensus 83 kr~~~ 87 (102)
T 2da6_A 83 AFRQK 87 (102)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 88643
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.48 E-value=4.9e-15 Score=135.76 Aligned_cols=64 Identities=23% Similarity=0.460 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
..++|++|++||..|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4567788999999999999999999999999999999999999999999999999999999654
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.47 E-value=3.7e-15 Score=118.07 Aligned_cols=56 Identities=32% Similarity=0.457 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhH
Q 046202 21 HRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNE 76 (448)
Q Consensus 21 tr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 76 (448)
..+|..|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+++.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999998654
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=1.5e-14 Score=113.75 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHHhCCCcceeeeeccccchHHh
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKD-CPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 72 (448)
.+++||.|+.|+.+|+..|+..|+. ++||+...|..||.++||++++|++||||||--.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 4567888999999999999999999 99999999999999999999999999999997644
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.46 E-value=1.4e-14 Score=113.51 Aligned_cols=52 Identities=31% Similarity=0.489 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 23 HTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 23 ~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
-|.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4789999999999999999999999999999999999999999999999974
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.46 E-value=7.7e-15 Score=124.04 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHH------------------hC---CCcceeeeeccccchH
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKE------------------LG---LDLKQIKFWFQNKRTQ 70 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~------------------Lg---Ls~rQVkvWFQNRRaK 70 (448)
.++++|+.|+.||..|+..||..|..++||+..+|.+||.. || |++.||++||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34567788899999999999999999999999999999999 88 9999999999999999
Q ss_pred HhHHhH
Q 046202 71 TKAQNE 76 (448)
Q Consensus 71 ~Kr~~~ 76 (448)
+|+++.
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 887653
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.44 E-value=1.3e-14 Score=113.41 Aligned_cols=50 Identities=38% Similarity=0.630 Sum_probs=46.9
Q ss_pred CHHHHHHHHHhH-hcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 24 TTHQIQTLEAFF-KDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 24 T~eQl~~LE~~F-~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
.+.|+..||..| ..++||+..+|.+||++|||+++||++||||||+|+|+
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 356899999999 67999999999999999999999999999999999986
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.43 E-value=2.9e-14 Score=129.32 Aligned_cols=61 Identities=25% Similarity=0.462 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 14 NKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 14 ~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
+++||+|++||..|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4667788999999999999999999999999999999999999999999999999999973
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.5e-14 Score=110.75 Aligned_cols=52 Identities=15% Similarity=0.383 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 22 r~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
..+.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4678999999999999999999999999999999999999999999999776
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.41 E-value=3.7e-14 Score=129.32 Aligned_cols=64 Identities=28% Similarity=0.382 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHh
Q 046202 12 SQNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQN 75 (448)
Q Consensus 12 ~~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 75 (448)
..+++||+|+.||..|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 4456788899999999999999999999999999999999999999999999999999998853
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=9.7e-14 Score=108.99 Aligned_cols=58 Identities=24% Similarity=0.430 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHhHh---cCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHHhh
Q 046202 22 RHTTHQIQTLEAFFK---DCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNERAN 79 (448)
Q Consensus 22 r~T~eQl~~LE~~F~---~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e 79 (448)
+||.+|+..|+..|. .++||+..++.+||.++||+++||++||||||+|+|+....+.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 9999999999999999999999999999999999998655444
No 74
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.25 E-value=6.4e-11 Score=111.66 Aligned_cols=192 Identities=16% Similarity=0.268 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcccCC-CCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHHHHh
Q 046202 207 MMETATNAMDELIRLMRINEPLWIKPP-SSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLVEML 285 (448)
Q Consensus 207 ~~~lA~~am~El~~la~~~~plWi~~~-~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lve~l 285 (448)
...+|++||++++.+.+ ++.-|-... +. .|-.+ |.+.++. .| -.-|..++|...+..+.+.|
T Consensus 12 y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~--~gv~v-----y~~~~~~------~g---~~~k~~~~v~~~~~~v~~~l 74 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS-NQEGWKKESQQD--NGDKV-----MSKVVPD------VG---KVFRLEVVVDQPMERLYEEL 74 (221)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTCEEEEECT--TSCEE-----EEEECSS------SC---EEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCeEeeecC--CCcEE-----EEEEcCC------Cc---eEEEEEEEEcCCHHHHHHHH
Confidence 46899999999999976 345696652 21 02122 3333321 12 33488899999999999998
Q ss_pred -cC---hhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhh-hccCccccCceeEEEEeeeeecCCeEEEEEEec
Q 046202 286 -LD---SDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQM-HILSPLVSPREYYFLRHCQQIELGLWVIVDVSY 360 (448)
Q Consensus 286 -mD---~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~-~v~SPlvp~Re~~flRyc~q~~~g~w~vvDvS~ 360 (448)
+| ..+|-..|-.. +.|+.++.+ + .+.|... ..+.+++++|||.++||.++. +|.++|+-.|+
T Consensus 75 ~~d~~~r~~Wd~~~~~~----~vle~~~~~-------t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv 141 (221)
T 3p0l_A 75 VERMEAMGEWNPNVKEI----KVLQKIGKD-------T-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMAT 141 (221)
T ss_dssp TTTGGGTTTSCTTCSEE----EEEEECSSS-------E-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEEC
T ss_pred HhccchhhhcCcchheE----EEEEecCCC-------e-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEec
Confidence 46 45677666444 777776642 2 4555332 223568999999999999986 68899999998
Q ss_pred CCCC--CCCCCcccccCCccceeeeCCCC--cceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHHHHHH
Q 046202 361 EWPK--DNISSSHCWRLPSGFMIQDMTNG--CSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQRTCE 433 (448)
Q Consensus 361 d~~~--~~~~~~~~~r~PSGclIq~~~ng--~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~R~ce 433 (448)
+... +...++|...+++|++|++.++| .|+|||+-|++..-+ ++ ..+++..+.-+.-.++..|+++|+
T Consensus 142 ~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 142 DFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW--LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS--CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC--CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7432 11237999999999999999988 999999999988755 33 356666666666678999999988
No 75
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.23 E-value=6.1e-11 Score=112.24 Aligned_cols=201 Identities=12% Similarity=0.198 Sum_probs=139.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEech
Q 046202 199 INDLEQSLMMETATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNG 278 (448)
Q Consensus 199 ~~~~~k~~~~~lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~ 278 (448)
+++.| ...++.+..|++++.++... .--|-...+. +.|-- -|.+..+. .|. .-|..++|...+
T Consensus 16 l~~~~-~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~-~~g~~-----vy~~~~~~------~g~---~~k~~~~v~~~~ 78 (229)
T 1em2_A 16 FSAQE-REYIRQGKEATAVVDQILAQ-EENWKFEKNN-EYGDT-----VYTIEVPF------HGK---TFILKTFLPCPA 78 (229)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHTT-GGGCEEEEEC-TTCCE-----EEEEEETT------TEE---EEEEEEEESSCH
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHhhC-CCCCEEEEec-CCCCE-----EEEEecCC------CCc---eEEEEEEecCCH
Confidence 45556 55678899999999999863 3368554211 00111 14443321 121 338889999999
Q ss_pred hhHH-HHhcChh---hhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhcc--CccccCceeEEEEeeeeecCCe
Q 046202 279 MQLV-EMLLDSD---KWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHIL--SPLVSPREYYFLRHCQQIELGL 352 (448)
Q Consensus 279 ~~lv-e~lmD~~---~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~--SPlvp~Re~~flRyc~q~~~g~ 352 (448)
..+. ++|+|.+ +|-..| ..+++|+.|+.+ + .+ +-++..+ .+++++|||.++|+++.. ++.
T Consensus 79 ~~v~~~~~~d~~~r~~Wd~~~----~~~~vle~~~~~-------t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~ 144 (229)
T 1em2_A 79 ELVYQEVILQPERMVLWNKTV----TACQILQRVEDN-------T-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDR 144 (229)
T ss_dssp HHHHHHTTTCHHHHTTTCTTE----EEEEEEEEETTT-------E-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSE
T ss_pred HHHHHHHHhCccchhhccccc----ceEEEEEecCCC-------e-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCE
Confidence 9998 7777764 555544 444888887643 2 23 3335544 578999999999999987 667
Q ss_pred EEEEEEecCCCC--CCCCCcccccCCccceeeeCC--CCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHH
Q 046202 353 WVIVDVSYEWPK--DNISSSHCWRLPSGFMIQDMT--NGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTL 428 (448)
Q Consensus 353 w~vvDvS~d~~~--~~~~~~~~~r~PSGclIq~~~--ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l 428 (448)
++|+-.|++... +...++|+...+||++|++++ +|.|+|||+-|++..-+ ++ +.+++..+.-+.-..+..|
T Consensus 145 ~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP---~~l~n~~~~~~~~~~~~~L 219 (229)
T 1em2_A 145 YLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR--LP---RYLIHQSLAATMFEFAFHL 219 (229)
T ss_dssp EEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS--SC---HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC--CC---HHHHHHHHHHHHHHHHHHH
Confidence 999999998532 112379999999999999987 67899999999987755 33 5667777766677788888
Q ss_pred HHHHHHH
Q 046202 429 QRTCERL 435 (448)
Q Consensus 429 ~R~cer~ 435 (448)
+.+|+.+
T Consensus 220 r~~~~~~ 226 (229)
T 1em2_A 220 RQRISEL 226 (229)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8888754
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.20 E-value=1.2e-12 Score=122.94 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhC---------------------CCcceeeeeccccchHH
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELG---------------------LDLKQIKFWFQNKRTQT 71 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------------Ls~rQVkvWFQNRRaK~ 71 (448)
.+++||.|+.|+..|+..||..|..++||+..+|.+||..++ |++.+|++||||||++.
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 356678888999999999999999999999999999999999 99999999999999998
Q ss_pred hH
Q 046202 72 KA 73 (448)
Q Consensus 72 Kr 73 (448)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 77
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.15 E-value=1.8e-10 Score=110.67 Aligned_cols=170 Identities=15% Similarity=0.226 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhhccCCCCcccCCCCCCCCccccChhhhcccCCCCCCCCCCCCeeeeecceeeEEechhhHH-HHhcCh
Q 046202 210 TATNAMDELIRLMRINEPLWIKPPSSTNIERYVIHPESYEKVFPRANHFKTSSARVESSKYSGMVTMNGMQLV-EMLLDS 288 (448)
Q Consensus 210 lA~~am~El~~la~~~~plWi~~~~~~~~~~e~ln~~~y~~~f~~~~~~~~~~~~~easR~~~~V~~~~~~lv-e~lmD~ 288 (448)
++..++.|+++.+.....-|-...+. .|-.+ |.+..+ .|...-.-|..++|...+..++ ++|.|+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~--~gi~V-----~~k~~~-------~~~~~~~~K~~~~v~~~~~~v~~~ll~dr 98 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSST--DNTDL-----AFKKVG-------DGNPLKLWKASVEVEAPPSVVLNRVLRER 98 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCS--SSCEE-----EEECCC-------SSCCCCEEEEEEEESSCHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecC--CCeEE-----EEEEcC-------CCCCcEEEEEEEEEcCChHHHHHHHHhhh
Confidence 34567777887765545569664322 02122 222111 2333345577888877777765 789999
Q ss_pred hhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeee-ecCCeEEEEEEecCCCC--C
Q 046202 289 DKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQ-IELGLWVIVDVSYEWPK--D 365 (448)
Q Consensus 289 ~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q-~~~g~w~vvDvS~d~~~--~ 365 (448)
.+|-..|-.+ ++|+.|+.. -.++|..+..+.| +++|||.++|+.++ +++|.++|+-.|++... +
T Consensus 99 ~~Wd~~~~~~----~vle~id~~--------~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~ 165 (237)
T 2pso_A 99 HLWDEDFVQW----KVVETLDRQ--------TEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL 165 (237)
T ss_dssp GGTCTTBCCC----EEEEEEETT--------EEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCC
T ss_pred hhHHhhhceE----EEEEEcCCC--------cEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCC
Confidence 9999888666 888888642 2566766666665 79999999999985 68999999999998532 2
Q ss_pred CCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhh
Q 046202 366 NISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLY 409 (448)
Q Consensus 366 ~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~ 409 (448)
. .++|+..+++|++|++.++|.|+|||+-|++..- .++.-+
T Consensus 166 ~-g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~G--~iP~~l 206 (237)
T 2pso_A 166 L-GGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKG--HSPEWY 206 (237)
T ss_dssp C-SSEECCEEEEEEEEEECSTTCEEEEEEEEECCSS--SCTTTT
T ss_pred C-CcEEEEEeccEEEEEECCCCCEEEEEEEEeCCCC--CchHHH
Confidence 2 3799999999999999999999999999998873 466444
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.13 E-value=1.5e-11 Score=101.87 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHH
Q 046202 20 CHRHTTHQIQTLEAFFKD---CPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNER 77 (448)
Q Consensus 20 rtr~T~eQl~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 77 (448)
.+-|+.++...|+..|.. ++||+..+|.+||.++||+++||++||||+|.|.|+...+
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 346899999999999987 9999999999999999999999999999999999885443
No 79
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.07 E-value=2.8e-11 Score=115.43 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhC---------------------CCcceeeeeccccchHH
Q 046202 13 QNKGKITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELG---------------------LDLKQIKFWFQNKRTQT 71 (448)
Q Consensus 13 ~~k~Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------------Ls~rQVkvWFQNRRaK~ 71 (448)
++++||.|+.|++.|+..||..|..++||+..+|++||..+| |++.||++||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 455677888899999999999999999999999999999998 89999999999999874
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=5.2e-11 Score=94.13 Aligned_cols=46 Identities=20% Similarity=0.488 Sum_probs=44.0
Q ss_pred HHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchH
Q 046202 25 THQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQ 70 (448)
Q Consensus 25 ~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK 70 (448)
.+|+..|+..|..+++|+..++..||..+||+.+.|++||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 81
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.98 E-value=1.6e-09 Score=102.50 Aligned_cols=149 Identities=15% Similarity=0.219 Sum_probs=113.7
Q ss_pred eecceeeEEechhhHHHHhcChh---hhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhc-cCccccCceeEEE
Q 046202 267 SSKYSGMVTMNGMQLVEMLLDSD---KWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHI-LSPLVSPREYYFL 342 (448)
Q Consensus 267 asR~~~~V~~~~~~lve~lmD~~---~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v-~SPlvp~Re~~fl 342 (448)
.-|..++|...+..|.+.|+|.. +|-..|-.. +.|+.|+.. -.+.|.-+.- +-|+|.+|||.++
T Consensus 68 ~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~~~----~vle~id~~--------~~I~y~~~~~~~~~~v~~RDfv~~ 135 (224)
T 1jss_A 68 LYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSL----DVLEHFEEN--------CCVMRYTTAGQLLNIISPREFVDF 135 (224)
T ss_dssp EEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEE----EEEEECSTT--------EEEEEEEECCBTTTTBCCEEEEEE
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccccccccceeeE----EEEEEcCCC--------eEEEEEEcccccCCCCCCCeEEEE
Confidence 44888999999999999999965 787776444 777766532 2455555443 3457999999999
Q ss_pred EeeeeecCCeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCC--cceEEEEEeeeecCcCccchhhccccccccccc
Q 046202 343 RHCQQIELGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNG--CSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYG 420 (448)
Q Consensus 343 Ryc~q~~~g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng--~skVtwveH~e~d~~~~v~~l~r~l~~sg~afG 420 (448)
|+.++.++| ++|+-+|++.....+.++|....++|++|++.++| .|+|||+-|++..-+ ++ ..+++..+.-+
T Consensus 136 r~~~~~~~~-~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP---~~lvn~~~~~~ 209 (224)
T 1jss_A 136 SYTVGYEEG-LLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM--IP---QSAVDTAMAST 209 (224)
T ss_dssp EEEEEETTE-EEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC--CC---HHHHHHHHHHH
T ss_pred EEEEEcCCe-EEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC--cc---HHHHHHHHHHh
Confidence 999998777 88899999854322348999999999999999875 899999999988755 33 35666666666
Q ss_pred hhhHHHHHHHHHH
Q 046202 421 AERWVVTLQRTCE 433 (448)
Q Consensus 421 A~RW~~~l~R~ce 433 (448)
.-.++..|+.+|+
T Consensus 210 ~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 210 LANFYSDLRKGLR 222 (224)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 6778888888765
No 82
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.95 E-value=1.1e-10 Score=118.03 Aligned_cols=55 Identities=22% Similarity=0.435 Sum_probs=51.7
Q ss_pred CCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHh
Q 046202 18 ITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTK 72 (448)
Q Consensus 18 r~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~K 72 (448)
+.++.++.+|+..||+.|+.++||+..+|.+||+++||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3456799999999999999999999999999999999999999999999999976
No 83
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.86 E-value=1.3e-08 Score=94.57 Aligned_cols=150 Identities=19% Similarity=0.275 Sum_probs=114.5
Q ss_pred eeecceeeEE-echhhHHHHhcC---hhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEE
Q 046202 266 ESSKYSGMVT-MNGMQLVEMLLD---SDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYF 341 (448)
Q Consensus 266 easR~~~~V~-~~~~~lve~lmD---~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~f 341 (448)
-.-|..++|. ..+..+.+.|+| ..+|...+-.. + ||.. +|. .++|.++..|.|+ ..|||.+
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~----~---vle~------~~~-~i~~~~~~~p~p~-~~RD~v~ 116 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKEL----Y---EQEC------NGE-TVVYWEVKYPFPM-SNRDYVY 116 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEE----E---EEEE------TTE-EEEEEEECCCTTS-CCEEEEE
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhE----E---Eecc------CCC-EEEEEEEEcCCCC-CCceEEE
Confidence 3568999995 999999999999 56777665332 4 4443 232 4788888888886 9999999
Q ss_pred EEeeeeec-CC--eEEEEEEecCCCC--CCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccc
Q 046202 342 LRHCQQIE-LG--LWVIVDVSYEWPK--DNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNN 416 (448)
Q Consensus 342 lRyc~q~~-~g--~w~vvDvS~d~~~--~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg 416 (448)
+|+++.+. +| .|+|+-.|++... +...++|...+++|++|++.++|.|+||++-|++..- .++. -+++..
T Consensus 117 ~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~G--~iP~---~l~n~~ 191 (214)
T 1ln1_A 117 LRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGG--QIPS---WLINWA 191 (214)
T ss_dssp EEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSS--CCCH---HHHHHH
T ss_pred EEEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCCC--cccH---HHHHHH
Confidence 99999875 66 5999999987432 1123789999999999999999999999999998873 4553 344555
Q ss_pred cccchhhHHHHHHHHHHHH
Q 046202 417 CAYGAERWVVTLQRTCERL 435 (448)
Q Consensus 417 ~afGA~RW~~~l~R~cer~ 435 (448)
+.-++..++..|+++|+.+
T Consensus 192 ~~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 192 AKNGVPNFLKDMARACQNY 210 (214)
T ss_dssp HHTHHHHHHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHHHHhc
Confidence 5667788899999988743
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.82 E-value=1.3e-08 Score=99.32 Aligned_cols=125 Identities=14% Similarity=0.159 Sum_probs=95.1
Q ss_pred cceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCc--cccCceeEEEEeee
Q 046202 269 KYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSP--LVSPREYYFLRHCQ 346 (448)
Q Consensus 269 R~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SP--lvp~Re~~flRyc~ 346 (448)
|..++|...+..|.+.|+|.+...+=-+.+ ..++.|+-|+. + .++| ++..++| ++++|||..|||.+
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~-~~~~vle~id~------~---~ivY-~~~~p~~~~~v~~RDFV~lr~~r 159 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY-RSVELVQQVDE------D---DAIY-HVTSPALGGHTKPQDFVILASRR 159 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC-CEEEEEEEEET------T---EEEE-EEEECCCTTCSSCEEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc-cEEEEEEEcCC------C---eEEE-EEecCCccCCCCCCEEEEEEEEE
Confidence 788899999999999999986544444443 33476766653 2 3567 6667775 79999999999998
Q ss_pred ee-cCCe-EEEEEEecCCC--CCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccch
Q 046202 347 QI-ELGL-WVIVDVSYEWP--KDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHR 407 (448)
Q Consensus 347 q~-~~g~-w~vvDvS~d~~--~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~ 407 (448)
.. .+|. .+|+-.|++.. .+...++|...+|||++|++.++|-|+||++-|++- . .++.
T Consensus 160 ~~~~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G-~lP~ 221 (258)
T 3fo5_A 160 KPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--G-VLNY 221 (258)
T ss_dssp CCSSTTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--G-GHHH
T ss_pred eccCCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--C-CCCc
Confidence 74 4774 99999998742 222237999999999999999999999999988873 5 4543
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.63 E-value=2.3e-07 Score=84.72 Aligned_cols=152 Identities=11% Similarity=0.027 Sum_probs=108.6
Q ss_pred eecceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeee
Q 046202 267 SSKYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQ 346 (448)
Q Consensus 267 asR~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~ 346 (448)
.=|..++|...+..+.+.|+|.+...+--|.+ .-.+||.. . ++ -.++|.++..+-| +..|||.++|+..
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~----~~~~vle~-~----~~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPDV----AASELLKA-T----DT-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTTE----EEEEEEEE-C----SS-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHhc----CEEEEEee-c----CC-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 46788999999999999999987766666665 33445554 2 12 2456777776655 7999999999999
Q ss_pred eecCCeEEEEEEecCC-CCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHH
Q 046202 347 QIELGLWVIVDVSYEW-PKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWV 425 (448)
Q Consensus 347 q~~~g~w~vvDvS~d~-~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~ 425 (448)
...+|...|+=.|... ..+...++|...+++|++|++ ++|.|+||++-|++..-+ ++ .-+++..+.-++-..+
T Consensus 97 ~~~~g~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G~--iP---~~lvn~~~~~~~~~~l 170 (189)
T 3qsz_A 97 KAGDGAITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGS--IP---SWLANQTVVETPFGTL 170 (189)
T ss_dssp ECTTSCEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCSS--SC---HHHHHHTTTHHHHHHH
T ss_pred ECCCCeEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCCC--CC---HHHHHHHHHHHHHHHH
Confidence 8878876554333211 111123688999999999999 999999999999987644 43 2445555555666788
Q ss_pred HHHHHHHHHH
Q 046202 426 VTLQRTCERL 435 (448)
Q Consensus 426 ~~l~R~cer~ 435 (448)
..|+++|+..
T Consensus 171 ~~L~k~~~~~ 180 (189)
T 3qsz_A 171 KALRSHLRQA 180 (189)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHhhhc
Confidence 8898888753
No 86
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.39 E-value=1.4e-06 Score=83.53 Aligned_cols=150 Identities=11% Similarity=0.193 Sum_probs=106.1
Q ss_pred ecceeeEE-echhhHHHHhcCh---hhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEE
Q 046202 268 SKYSGMVT-MNGMQLVEMLLDS---DKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLR 343 (448)
Q Consensus 268 sR~~~~V~-~~~~~lve~lmD~---~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flR 343 (448)
=|..++|. ..+..+.+.|+|. .+|-..+ ..+++|+.|..+ + .+.|..+..|.|+ ..|||.++|
T Consensus 75 ~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~~----~~~~vle~i~~~-------~-~i~y~~~~~p~p~-s~RDfV~~r 141 (255)
T 2e3n_A 75 LKATHAVKGVTGHEVCNYFWNVDVRNDWETTI----ENFHVVETLADN-------A-IIIYQTHKRVWPA-SQRDVLYLS 141 (255)
T ss_dssp EEEEEEEETCCHHHHHHHHHCGGGHHHHCCSE----EEEEEEEEEETT-------E-EEEEEEECCCTTS-CCEEEEEEE
T ss_pred EEEEEEEcCCCHHHHHHHHhCcchHhhhhhhc----ceeEEEEEcCCC-------C-EEEEEEeecCCCc-CCceeEEEE
Confidence 35556665 7899999999995 5666554 344777776532 2 6788888888885 899999999
Q ss_pred eeeeec----C--CeEEEEEEecCCCC--CCCCCccccc---CCccceeeeCC--------CCcceEEEEEeeeecCcCc
Q 046202 344 HCQQIE----L--GLWVIVDVSYEWPK--DNISSSHCWR---LPSGFMIQDMT--------NGCSNVTWLEHVEVDDKTQ 404 (448)
Q Consensus 344 yc~q~~----~--g~w~vvDvS~d~~~--~~~~~~~~~r---~PSGclIq~~~--------ng~skVtwveH~e~d~~~~ 404 (448)
++++.. + +.|+|+..|++.-. +...++|... +.+|++|++.. ++.|+||++-|++..-+
T Consensus 142 ~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G~-- 219 (255)
T 2e3n_A 142 VIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGW-- 219 (255)
T ss_dssp EEEEECCSSTTSCCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSSC--
T ss_pred EEEeccccccCCCCEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCCc--
Confidence 999883 3 59999999998532 1112577774 56899998863 35799999999987644
Q ss_pred cchhhccccccccccchhhHHHHHHHHHHHH
Q 046202 405 THRLYRDLICNNCAYGAERWVVTLQRTCERL 435 (448)
Q Consensus 405 v~~l~r~l~~sg~afGA~RW~~~l~R~cer~ 435 (448)
++. -+++.....+.-..+..|+.+++..
T Consensus 220 iP~---~lvn~~~~~~~~~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 220 APA---SVLRAVAKREYPKFLKRFTSYVQEK 247 (255)
T ss_dssp CCH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCH---HHHHHHHhccccHHHHHHHHHHHHh
Confidence 443 3444555566777888888888743
No 87
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.31 E-value=3.6e-08 Score=68.72 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=18.6
Q ss_pred ceeeeeccccchHHhHHhHHhh
Q 046202 58 KQIKFWFQNKRTQTKAQNERAN 79 (448)
Q Consensus 58 rQVkvWFQNRRaK~Kr~~~r~e 79 (448)
+||+|||||||+|+|+++....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 5999999999999999765533
No 88
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=95.72 E-value=0.024 Score=46.99 Aligned_cols=141 Identities=10% Similarity=-0.027 Sum_probs=79.0
Q ss_pred ceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeec
Q 046202 270 YSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIE 349 (448)
Q Consensus 270 ~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~ 349 (448)
.+..|...+..+-+.|.|.+.|.+.+|.+ ..++++..+. +|.. ..+.+-.| +.+.-+..++....+
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~~~----~g~~----~~~~~~~~--g~~~~~~~~~~~~~~ 71 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAREG----ARTR----SRWVAVAM--GKKVRWLEEEEWDDE 71 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEEET----TEEE----EEEEEEET--TEEEEEEEEEEEETT
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEeCC----CccE----EEEEEEeC--CceEEEEEEEEEcCC
Confidence 34566778899999999999999999987 3345554332 1221 11111111 222334445543322
Q ss_pred CCeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHH
Q 046202 350 LGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQ 429 (448)
Q Consensus 350 ~g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~ 429 (448)
+...+. . .+++... .+.. -.-+.+.++| ++|+|..+.+.... .+..++.+++..-+.-+.++.+..|.
T Consensus 72 ~~~i~~-~-~~~g~~~--~~~~------~~~~~~~~~g-T~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~lk 139 (147)
T 2d4r_A 72 NLRNRF-F-SPEGDFD--RYEG------TWVFLPEGEG-TRVVLTLTYELTIP-IFGGLLRKLVQKLMQENVESLLKGLE 139 (147)
T ss_dssp TTEEEE-E-EEEESCS--EEEE------EEEEEECSSS-EEEEEEEEEECCCT-TTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEE-E-eccCChh--heEE------EEEEEECCCC-cEEEEEEEEecCCc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 1 1121100 0011 1235677888 99999988887643 34445555554444566888999999
Q ss_pred HHHHHHH
Q 046202 430 RTCERLL 436 (448)
Q Consensus 430 R~cer~a 436 (448)
+.+|..+
T Consensus 140 ~~~e~~~ 146 (147)
T 2d4r_A 140 ERVLAAS 146 (147)
T ss_dssp HHHHHTT
T ss_pred HHHHhhc
Confidence 9998753
No 89
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=88.21 E-value=0.092 Score=42.40 Aligned_cols=76 Identities=16% Similarity=0.238 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchH--------HhHHhHHhhhHHHHHhhHHHHH
Q 046202 21 HRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQ--------TKAQNERANNSVLRAENERVHC 92 (448)
Q Consensus 21 tr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK--------~Kr~~~r~e~~~L~~ene~L~~ 92 (448)
..||.++....-..+.... .....++|+.+|+++..|..|.+.-+.. ........+...|+.+|..|+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~~~~~~~~~~~~~~~ei~~L~~e~~~L~~ 80 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRA 80 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHHHCCCSTTCSCCCCHHHHTHHHHHHHHHCGGGGGG
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHHHhhcCcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 3688888766555553220 1235689999999999999997533321 0111223445555556666655
Q ss_pred hHHHHHH
Q 046202 93 ENLAIRE 99 (448)
Q Consensus 93 en~~l~~ 99 (448)
||+-++.
T Consensus 81 e~~~Lkk 87 (97)
T 2jn6_A 81 RTRHPAE 87 (97)
T ss_dssp TTSCCCG
T ss_pred HHHHHHH
Confidence 5544443
No 90
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.70 E-value=0.15 Score=40.09 Aligned_cols=44 Identities=27% Similarity=0.408 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccc
Q 046202 23 HTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQN 66 (448)
Q Consensus 23 ~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 66 (448)
.++.-.+.|++.|+..+.+.......|+.+.+|+..||+-||--
T Consensus 13 ~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 44555789999999999999999999999999999999999953
No 91
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=87.21 E-value=1.2 Score=37.97 Aligned_cols=141 Identities=14% Similarity=0.211 Sum_probs=79.8
Q ss_pred cceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeee
Q 046202 269 KYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQI 348 (448)
Q Consensus 269 R~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~ 348 (448)
+.+..|...+..+-+.+.|.++|-+.+|.+. -+++++.+..|. |. -+.+++.+- .-+.++-+..|+..+-
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~----~~~v~~~~~~~g--~~--~~~~~~~~~--~~~~~~~~~~~v~~~~ 74 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWIT----GMRTWNGRVDGA--VS--TVDAEAQVG--FSFLREKFATRVRRDK 74 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCC----CCCEEEEEEETT--EE--EEEEEEECS--TTSSCCEEEEEEEEET
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcC----eeEEEEecCCCC--Cc--eEEEEEEEE--ecceeEEEEEEEEEcC
Confidence 3456777789999999999999999999993 344555332211 11 133444442 2244666677777543
Q ss_pred cCCeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHH
Q 046202 349 ELGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTL 428 (448)
Q Consensus 349 ~~g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l 428 (448)
.+ ..|.-.++++... .....|+ +++.++| |+|++.-+.++... ++..++..-+.--+++.+.++
T Consensus 75 ~~--~~i~~~~~~G~f~--~~~g~w~------f~~~~~g-t~v~~~~~~~~~~~-----l~~~l~~~~~~~~~~~~~~~f 138 (148)
T 1t17_A 75 DA--RSIDVSLLYGPFK--RLNNGWR------FMPEGDA-TRVEFVIEFAFKSA-----LLDAMLAANVDRAAGKLIACF 138 (148)
T ss_dssp TT--CEEEEEESSTTSS--CEEEEEE------EEEETTE-EEEEEEEEECCSCH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEECCCChh--ccEEEEE------EEECCCC-eEEEEEEEEEECcH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 33 2233334443110 0122233 4567788 99999988887633 333333222223356667777
Q ss_pred HHHHHHH
Q 046202 429 QRTCERL 435 (448)
Q Consensus 429 ~R~cer~ 435 (448)
.+.|+.+
T Consensus 139 ~~r~~~~ 145 (148)
T 1t17_A 139 EARAQQL 145 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666643
No 92
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.28 E-value=1.7 Score=33.18 Aligned_cols=41 Identities=29% Similarity=0.324 Sum_probs=34.2
Q ss_pred HHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHH
Q 046202 76 ERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHE 138 (448)
Q Consensus 76 ~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~ 138 (448)
++.....+..+.+.|..+|..|+..+ ..|..|+..||+-+.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i----------------------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERA----------------------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHh
Confidence 35667788899999999999999887 789999999987654
No 93
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=85.42 E-value=2 Score=32.34 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=32.0
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHH
Q 046202 77 RANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEH 137 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el 137 (448)
......|..+.+.|..+|..|+..+ ..|+.|++.|++.+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i----------------------~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEV----------------------TLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHh
Confidence 5567778888889999999988887 77888888888765
No 94
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.38 E-value=1.9 Score=34.67 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=17.8
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhhcC
Q 046202 124 QKLQLENSQLKEEHEKVSNLLAKYIG 149 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~~~~~~~~~ 149 (448)
..|..||.+|++|..-....+...+|
T Consensus 51 ~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 51 EELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55999999999998744443333333
No 95
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=84.28 E-value=5.7 Score=34.90 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=79.2
Q ss_pred cceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeee
Q 046202 269 KYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQI 348 (448)
Q Consensus 269 R~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~ 348 (448)
..+.+|.-.+..+-+.+-|.+.|-+.+|.+ .-++++..+. ++ +.+++.+.-. ..++-+.-|+..+-
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~----~~~~v~~~~~----~~----~~~~~~~~~~--G~~~~~~s~~~~~~ 73 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPT----EKVEILEEGQ----GY----QVVRLHVDVA--GEINTWTSRRDLDP 73 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSE----EEEEEEEEET----TE----EEEEEEEEET--TEEEEEEEEEEEET
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCccc----ceEEEEecCC----CE----EEEEEEEecC--CEEEEEEEEEEEeC
Confidence 455677788999999999999999999998 5566665432 11 2233332211 22333333433332
Q ss_pred cCCe--EEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhcccccc---------cc
Q 046202 349 ELGL--WVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICN---------NC 417 (448)
Q Consensus 349 ~~g~--w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~s---------g~ 417 (448)
++.. |-.++ .++... .....|+ +.+.++|.|+|+|.-+.++... .+..++.++..- -+
T Consensus 74 ~~~~i~~~~~~--~~gpf~--~~~g~w~------f~~~~~~~t~V~~~~~~~~~~~-~l~~~lg~~~~~~~~~~~~~~~l 142 (172)
T 3tfz_A 74 ARRVIAYRQLE--TAPIVG--HMSGEWR------AFTLDAERTQLVLTHDFVTRAA-GDDGLVAGKLTPDEAREMLEAVV 142 (172)
T ss_dssp TTTEEEEEEEE--CCTTEE--EEEEEEE------EEEEETTEEEEEEEEEEEECCC-CTTSSBTTTBCHHHHHHHHHHHH
T ss_pred CCCEEEEEEee--CCCChh--hcEEEEE------EEECCCCcEEEEEEEEEEEcCh-hHHHhhccccCchhhHHHHHHHH
Confidence 2222 22221 011100 0111121 5566678899999999998876 555555544311 11
Q ss_pred ccchhhHHHHHHHHHHHHHHh
Q 046202 418 AYGAERWVVTLQRTCERLLAE 438 (448)
Q Consensus 418 afGA~RW~~~l~R~cer~a~~ 438 (448)
.=+.+.=|+.|.+.+|+.+..
T Consensus 143 ~~~~~~~L~~lk~~aE~~~~~ 163 (172)
T 3tfz_A 143 ERNSVADLNAVLGEAERRVRA 163 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHhh
Confidence 112334566777778876554
No 96
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=84.11 E-value=7.2 Score=34.35 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=79.2
Q ss_pred cceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhh--ccCccccCceeEEEEeee
Q 046202 269 KYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMH--ILSPLVSPREYYFLRHCQ 346 (448)
Q Consensus 269 R~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~--v~SPlvp~Re~~flRyc~ 346 (448)
..+.+|.-.+..+-+++-|.++|-+.||.+ ...+|++.+. + . +.+.|. +-. -- .++-+..|+..
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~----~~~~vl~~~~----~-~---~~~rl~~~~~~-~G-~~~~~ts~~~~ 71 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEY----ASVEVLGRDD----D-K---VTFRLTMHPDA-DG-KVWSWVSERVA 71 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSE----EEEEEEEECS----S-E---EEEEEEECCCT-TS-CCCEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCc----eEEEEEecCC----C-E---EEEEEEEEecc-Cc-eEEEEEEEEEE
Confidence 456677888999999999999999999999 5566776531 1 1 222322 211 11 23444455543
Q ss_pred eecCCeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccch-hhccccccccccchhhHH
Q 046202 347 QIELGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHR-LYRDLICNNCAYGAERWV 425 (448)
Q Consensus 347 q~~~g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~-l~r~l~~sg~afGA~RW~ 425 (448)
. .++.-+ ++.+ +.+++ | +.+=...-+.+.++| |+|+|.-+.+++....+.- .-...+.. ..+.-|
T Consensus 72 d-~~~~~I--~~~~--~~~gP-f---~~l~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~~~~~----~~~~~L 137 (159)
T 3tl1_A 72 D-PVTRTV--RAQR--VETGP-F---QYMNIVWEYAETAEG-TVMRWTQDFAMKPDAPVDDAWMTDNINR----NSRTQM 137 (159)
T ss_dssp E-TTTTEE--EEEE--SSCTT-E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHH----HHHHHH
T ss_pred c-CCCCEE--EEEE--ccCCC-h---hhccCEEEEEECCCC-EEEEEEEEEEecCCCCCCHHHHHHHHHh----hHHHHH
Confidence 2 233222 3321 11222 1 222223345677775 9999999999875512210 01111211 234458
Q ss_pred HHHHHHHHHHHHh
Q 046202 426 VTLQRTCERLLAE 438 (448)
Q Consensus 426 ~~l~R~cer~a~~ 438 (448)
+.|.+.+|+.+..
T Consensus 138 ~~lK~~~E~~~~~ 150 (159)
T 3tl1_A 138 ALIRDRIEQAAGE 150 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhh
Confidence 8888888887654
No 97
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=84.01 E-value=1.9 Score=35.38 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=50.1
Q ss_pred CCCcceeeeeccccchHHhHHhHHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhH
Q 046202 54 GLDLKQIKFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQL 133 (448)
Q Consensus 54 gLs~rQVkvWFQNRRaK~Kr~~~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~L 133 (448)
||+..+|.-+=|-||+-.-+...+.....-..+...|..++..+...+ ++|+.||+++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~----------------------~~L~~e~~~~ 74 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQV----------------------EQLKQEVSRL 74 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHH
Confidence 777777777766666665555555555555677778888888887776 7899999999
Q ss_pred HHHHHHHhhh
Q 046202 134 KEEHEKVSNL 143 (448)
Q Consensus 134 k~el~r~~~~ 143 (448)
+.|++.+...
T Consensus 75 ~~e~d~~k~k 84 (90)
T 2wt7_B 75 ARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876544
No 98
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=83.19 E-value=2.3 Score=34.71 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=11.1
Q ss_pred hHHHHHhhHHHHHhHHHHHHHh
Q 046202 80 NSVLRAENERVHCENLAIREAL 101 (448)
Q Consensus 80 ~~~L~~ene~L~~en~~l~~a~ 101 (448)
...+....+.|..||..|+..+
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v 59 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKV 59 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444
No 99
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=81.15 E-value=12 Score=33.23 Aligned_cols=145 Identities=10% Similarity=0.061 Sum_probs=78.9
Q ss_pred cceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeee
Q 046202 269 KYSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQI 348 (448)
Q Consensus 269 R~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~ 348 (448)
..+.+|.-.+..+-+.+-|.++|-+.+|.+ ...++++.+. +.+ .+...|++..--. .++|..-|.+.
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~----~~~~~~~~~~-----~~~-~~~l~~~~~~~G~-~~~~ts~~~~d-- 72 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEY----AEAEILRQDG-----DGF-DFRLKTRPDANGR-VWEWVSHRVPD-- 72 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTE----EEEEEEEEET-----TEE-EEEEEECCCTTSC-CCEEEEEEEEE--
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhhe----eEEEEEecCC-----CEE-EEEEEEEecCCCe-EEEEEEEEEEc--
Confidence 346677778889999999999999999999 4455665432 111 1111122222111 22333323221
Q ss_pred cCCeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccc-hhhccccccccccchhhHHHH
Q 046202 349 ELGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTH-RLYRDLICNNCAYGAERWVVT 427 (448)
Q Consensus 349 ~~g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~-~l~r~l~~sg~afGA~RW~~~ 427 (448)
.++..+.... +. +++ + ..+=+..-+.+.++| |+|+|.-+.++++...+. ..-+..+.. ..+..|+.
T Consensus 73 ~~~~~I~~~~-l~---~gP-f---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~av~~----~~~~~L~~ 139 (169)
T 3tvq_A 73 KGSRTVRAHR-VE---TGP-F---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPFDNAHMTAHLNT----TTRANMER 139 (169)
T ss_dssp GGGTEEEEEE-SS---CTT-E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHH----HHHHHHHH
T ss_pred CCCcEEEEEE-cC---CCC-h---hheeeEEEEEECCCC-EEEEEEEEEEecCCCcccHHHHHHHHHh----hHHHHHHH
Confidence 2222221111 11 111 1 122223446788888 999999999987541221 122222322 23557899
Q ss_pred HHHHHHHHHHhh
Q 046202 428 LQRTCERLLAEN 439 (448)
Q Consensus 428 l~R~cer~a~~~ 439 (448)
|.+.+|+.+..-
T Consensus 140 LK~~aE~~~~~~ 151 (169)
T 3tvq_A 140 IKKIIEDRHREG 151 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhhhhhhc
Confidence 999999887654
No 100
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=80.69 E-value=11 Score=32.81 Aligned_cols=140 Identities=13% Similarity=0.094 Sum_probs=78.8
Q ss_pred ceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeec
Q 046202 270 YSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIE 349 (448)
Q Consensus 270 ~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~ 349 (448)
.+.+|.-.+..+-+.+.|.++|...||..+.- . ..+ +|..+.+.+++.+-. ...|+-+..|+...-+
T Consensus 11 ~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~----~--~~~-----~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~~ 77 (161)
T 3p9v_A 11 RDLEIPASYDEVFDLLADVPKSASHFPKVDKL----V--DLG-----NNAYRWEMEKVGVDK--HAIQSVYACTYHADKE 77 (161)
T ss_dssp EEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE----E--EEE-----TTEEEEEECCBSSGG--GCBCCEEEEEEEEETT
T ss_pred EEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE----E--EcC-----CCceEEEEEEEeeee--EEEEEEEEEEEEEcCC
Confidence 45678888999999999999999999988442 1 211 223333445555433 2347888889876543
Q ss_pred CCeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhccccccccccchhhHHHHHH
Q 046202 350 LGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLICNNCAYGAERWVVTLQ 429 (448)
Q Consensus 350 ~g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~~sg~afGA~RW~~~l~ 429 (448)
+. -+... ++++.... ..... .-+.+.++|-|+|+|.-..|.. +.+..++..++..-+.-.|++-+.+..
T Consensus 78 ~~-~I~~~-~~~g~~~~-~l~g~------w~f~p~~~g~t~V~~~~~~e~~--~pl~~ll~~~~~~~~~~~~~~~v~af~ 146 (161)
T 3p9v_A 78 AG-KITWS-PIKGEGNG-VVSGS------WTLSAKGDNATAVKFQTSAELT--VPLPSLLKLAISPVIKHEFNSLVDTYM 146 (161)
T ss_dssp TT-EEEEE-ECTTSTTE-EEEEE------EEEEESSSSCEEEEEEEEEEEE--ECSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-EEEEE-EecCccce-eEEEE------EEEEECCCCeEEEEEEEEEEEc--CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 22221 12221000 01122 3356778888999999888876 133334444332222223455555544
Q ss_pred HHHH
Q 046202 430 RTCE 433 (448)
Q Consensus 430 R~ce 433 (448)
+-++
T Consensus 147 ~ra~ 150 (161)
T 3p9v_A 147 ANLK 150 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 101
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.46 E-value=2 Score=32.40 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=27.0
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHH
Q 046202 77 RANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEH 137 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el 137 (448)
......|..+.+.|..+|..|...+ ..|+.|++.|++.+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v----------------------~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTA----------------------NMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHH
Confidence 4556677777888888888887776 66777777777655
No 102
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=75.84 E-value=7 Score=29.53 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=28.5
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHH
Q 046202 77 RANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEH 137 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el 137 (448)
......|..+.+.|..+|..|+..+ ..|..|...|+.-+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei----------------------~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEI----------------------ANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHH
Confidence 5566777888888888888888776 56777777776654
No 103
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=75.09 E-value=7.5 Score=32.07 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=9.2
Q ss_pred ccCCCCCCCCC
Q 046202 103 NVICPSCGGPP 113 (448)
Q Consensus 103 ~~~C~~Cgg~~ 113 (448)
...||.||.+.
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 45799999987
No 104
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=74.69 E-value=1.6 Score=42.07 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=22.2
Q ss_pred HHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHH
Q 046202 82 VLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHE 138 (448)
Q Consensus 82 ~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~ 138 (448)
.+++||+.|+.||..++... .+.++|+.||++|++.|+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~-------------------~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLE-------------------SEVADLKKENKDLKESLD 60 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhc
Confidence 34556666666666655544 233567778888877765
No 105
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=73.83 E-value=5.2 Score=31.86 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=5.2
Q ss_pred HHHHHHhHHHHHH
Q 046202 126 LQLENSQLKEEHE 138 (448)
Q Consensus 126 L~~ENa~Lk~el~ 138 (448)
|..||..|+.++.
T Consensus 48 L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 48 LTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 106
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=70.86 E-value=12 Score=27.50 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=32.6
Q ss_pred hHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHh
Q 046202 80 NSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVS 141 (448)
Q Consensus 80 ~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~ 141 (448)
...++.++..|.+.|..|.+.+ +.-+.|...|++|++++.
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L----------------------~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETL----------------------KEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHhh
Confidence 3457788888888888888887 677888899999999864
No 107
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=60.73 E-value=34 Score=27.69 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=13.5
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHh
Q 046202 77 RANNSVLRAENERVHCENLAIREAL 101 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~ 101 (448)
+..|.+.+...++-+.....+....
T Consensus 21 ~rNN~AarrSR~krk~r~~e~~~r~ 45 (87)
T 1hjb_A 21 ERNNIAVRKSRDKAKMRNLETQHKV 45 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554
No 108
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=59.02 E-value=79 Score=26.47 Aligned_cols=118 Identities=8% Similarity=0.082 Sum_probs=60.9
Q ss_pred eeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEE--EEeeeee
Q 046202 271 SGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYF--LRHCQQI 348 (448)
Q Consensus 271 ~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~f--lRyc~q~ 348 (448)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..|. +.. .+.+ +.-|.+.-+. ++|...-
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~~~---~~~-------~~~~--~~g~~~~~~~~~~~~~~~~ 71 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGEDK---YKA-------DLQI--GIAAVKGKYDAIIEVTDIK 71 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEETTE---EEE-------EEEE--CCGGGCEEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCCCe---EEE-------EEEE--EeeeEEEEEEEEEEEEecC
Confidence 4456778899999999999999999987 4455553211 111 1111 1112222221 2333333
Q ss_pred cCCeEEEEEEecCCCCCCCCCcccccCCccceeeeCCCCcceEEEEEeeeecCcCccchhhcccc
Q 046202 349 ELGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMTNGCSNVTWLEHVEVDDKTQTHRLYRDLI 413 (448)
Q Consensus 349 ~~g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~ng~skVtwveH~e~d~~~~v~~l~r~l~ 413 (448)
....|++.-..-+. + .+.. .-.-+-+.+..+|.++|+|.-.+++... +..+..+++
T Consensus 72 ~~~~~~~~~~~~~~--~--~~~~---~~~~~~l~~~~~~gT~v~~~~~~~~~g~--l~~~~~~l~ 127 (162)
T 2pcs_A 72 PPYHYKLLVNGEGG--P--GFVN---AEGVIDLTPINDECTQLTYTYSAEVGGK--VAAIGQRML 127 (162)
T ss_dssp TTTEEEEEEEEEET--T--EEEE---EEEEEEEEESSSSEEEEEEEEEEEEESG--GGGGCHHHH
T ss_pred CCcEEEEEEEecCC--C--ccEE---EEEEEEEEecCCCcEEEEEEEEEEECCC--HHHhhHHHH
Confidence 44555443332221 0 0100 0011234566677899999877777644 334444444
No 109
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=55.52 E-value=8.9 Score=24.07 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=14.7
Q ss_pred HHHHHHHHhHHHHHHHHh
Q 046202 124 QKLQLENSQLKEEHEKVS 141 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~ 141 (448)
.+|...|++||+|+.-+.
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 368899999999987653
No 110
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=54.24 E-value=53 Score=25.95 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=11.2
Q ss_pred hHHHHHhhHHHHHhHHHHHHHh
Q 046202 80 NSVLRAENERVHCENLAIREAL 101 (448)
Q Consensus 80 ~~~L~~ene~L~~en~~l~~a~ 101 (448)
...+....+.|..||..|+..+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v 59 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKV 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444
No 111
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=53.91 E-value=13 Score=30.96 Aligned_cols=56 Identities=27% Similarity=0.211 Sum_probs=36.7
Q ss_pred HHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHH
Q 046202 76 ERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEK 139 (448)
Q Consensus 76 ~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r 139 (448)
.-+++-.|....+.+..+|.+++...... | . ...++..+..+|+.||.+|++|...
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~----~---~-~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRL----D---A-RVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc----h---h-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566667777777777777776653222 1 1 2345566778888999988888763
No 112
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=53.71 E-value=16 Score=35.23 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=33.1
Q ss_pred hHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHh
Q 046202 80 NSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVS 141 (448)
Q Consensus 80 ~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~ 141 (448)
...++.+++.|...|..|.+++ ++++.|..+||+|++++.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~L----------------------k~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETL----------------------KEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHH----------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHhc
Confidence 3456777888888888888887 789999999999999876
No 113
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=49.93 E-value=9.1 Score=31.76 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccch
Q 046202 19 TCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRT 69 (448)
Q Consensus 19 ~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRa 69 (448)
+|++||.++...+-..+..++.+.. .++|+.+|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 4557999998888777755655542 36899999999999999766544
No 114
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=49.78 E-value=27 Score=27.14 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=8.8
Q ss_pred HHHHHHhHHHHHHHHhh
Q 046202 126 LQLENSQLKEEHEKVSN 142 (448)
Q Consensus 126 L~~ENa~Lk~el~r~~~ 142 (448)
|..||..|++++..+..
T Consensus 48 l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555443
No 115
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.31 E-value=24 Score=25.91 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=9.2
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 046202 123 LQKLQLENSQLKEEHEKV 140 (448)
Q Consensus 123 ~~~L~~ENa~Lk~el~r~ 140 (448)
...|+.||+.||.++..+
T Consensus 21 ~eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAI 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555543
No 116
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=46.57 E-value=5.2 Score=29.11 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeecc
Q 046202 21 HRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQ 65 (448)
Q Consensus 21 tr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQ 65 (448)
..||.+........+... .+......++|+++|+++.+|..|..
T Consensus 4 ~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 468898877665544433 22112256899999999999999964
No 117
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=44.86 E-value=73 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHhhhh
Q 046202 123 LQKLQLENSQLKEEHEKVSNLL 144 (448)
Q Consensus 123 ~~~L~~ENa~Lk~el~r~~~~~ 144 (448)
+|.|..--+.|++|+.|+.+..
T Consensus 26 eqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 26 EQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 4667767778888888877643
No 118
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=43.19 E-value=57 Score=30.37 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=26.5
Q ss_pred HHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHH---HHHHhhhhhhhcCCCcccC
Q 046202 84 RAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEE---HEKVSNLLAKYIGKPICQM 155 (448)
Q Consensus 84 ~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~e---l~r~~~~~~~~~~~~~~~~ 155 (448)
-.||++|..+...+.+.+ ..|+.||..|+.= .+-+...+.+++|.+..++
T Consensus 114 LeEN~~Lh~~ie~l~eEi----------------------~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~ 166 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEI----------------------ARLKKENKELAEVAEHVQYMAELIERLNGEPLDNF 166 (209)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 355666666665555555 5566667666643 3344556677888775443
No 119
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=42.93 E-value=84 Score=25.25 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=8.1
Q ss_pred HhhHHHHHhHHHHHHHh
Q 046202 85 AENERVHCENLAIREAL 101 (448)
Q Consensus 85 ~ene~L~~en~~l~~a~ 101 (448)
.||++|..+...+.+.+
T Consensus 38 ~EN~~Lh~~ie~~~eEi 54 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEI 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555444444443
No 120
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=42.75 E-value=1.2 Score=37.75 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=36.2
Q ss_pred CCCcceeeeeccccchHHhHHhHHhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhH
Q 046202 54 GLDLKQIKFWFQNKRTQTKAQNERANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQL 133 (448)
Q Consensus 54 gLs~rQVkvWFQNRRaK~Kr~~~r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~L 133 (448)
||++.+|.-.=|-||+-.-+...+.....-..+.+.|..++..++.. ..+|..||+.|
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e----------------------~e~L~~En~~l 84 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQE----------------------VEKLASENASM 84 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSST----------------------TTTTTSTTSHH
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHH
Confidence 56666655444444444333333333333344555555554444333 36788888888
Q ss_pred HHHHHHHh
Q 046202 134 KEEHEKVS 141 (448)
Q Consensus 134 k~el~r~~ 141 (448)
+.|++.+.
T Consensus 85 ~~E~~~lk 92 (107)
T 3a5t_A 85 KLELDALR 92 (107)
T ss_dssp HHTTTSSS
T ss_pred HHHHHHHH
Confidence 88887654
No 121
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.01 E-value=93 Score=25.79 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=40.4
Q ss_pred HhhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCC------CCCccchhhHHHHHHHHHhHHHHHHHHhhhhhh
Q 046202 77 RANNSVLRAENERVHCENLAIREALKNVICPSCGGPP------FGIEERQRSLQKLQLENSQLKEEHEKVSNLLAK 146 (448)
Q Consensus 77 r~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~------~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~~~~ 146 (448)
+.+...|..|++.|+.+++.+...+.+..-...-.+. +.....+...++...+-..|++|++++...+.+
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777666666553222222221 111222334556677888888888888766543
No 122
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.50 E-value=34 Score=23.30 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=7.3
Q ss_pred HhhHHHHHhHHHHHHH
Q 046202 85 AENERVHCENLAIREA 100 (448)
Q Consensus 85 ~ene~L~~en~~l~~a 100 (448)
.||++|..+...-.+.
T Consensus 7 ~ENekLhk~ie~Kdee 22 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNE 22 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555544333333
No 123
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=41.42 E-value=65 Score=25.91 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=16.3
Q ss_pred HHHHHHHHhHHHHHHHHhhhhh
Q 046202 124 QKLQLENSQLKEEHEKVSNLLA 145 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~~~~~ 145 (448)
..|..|++.||++++.+..++.
T Consensus 56 e~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 56 EQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888887776653
No 124
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.67 E-value=36 Score=26.41 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=10.1
Q ss_pred HHHHHHHHhHHHHHHH
Q 046202 124 QKLQLENSQLKEEHEK 139 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r 139 (448)
+.|+.++..|..|+..
T Consensus 53 ~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 53 DQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666666653
No 125
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=39.68 E-value=14 Score=28.95 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCCCCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeec
Q 046202 17 KITCHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWF 64 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWF 64 (448)
++.+..|+.++....-..+... . ...++|+++|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 3445579998866555555432 1 25588999999999998886
No 126
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=37.61 E-value=76 Score=23.62 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=19.6
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhh
Q 046202 124 QKLQLENSQLKEEHEKVSNLLAK 146 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~~~~~~ 146 (448)
++|...+....+|+.|+.+++..
T Consensus 28 ~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 28 QHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999887654
No 127
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.15 E-value=21 Score=23.36 Aligned_cols=40 Identities=8% Similarity=0.138 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccc
Q 046202 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQN 66 (448)
Q Consensus 22 r~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 66 (448)
.++.++...+...+... . ...++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 47777775555555432 2 2568999999999999988754
No 128
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=32.59 E-value=12 Score=25.28 Aligned_cols=43 Identities=14% Similarity=0.330 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccch
Q 046202 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRT 69 (448)
Q Consensus 22 r~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRa 69 (448)
.++.++...+...+... ....++|+.+|++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 35666666555555433 23568999999999999999865443
No 129
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=31.65 E-value=46 Score=24.33 Aligned_cols=21 Identities=48% Similarity=0.635 Sum_probs=11.9
Q ss_pred HHHHHHHHhHHHHHHHHhhhh
Q 046202 124 QKLQLENSQLKEEHEKVSNLL 144 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~~~~ 144 (448)
..|+.||..||+||+.-+..+
T Consensus 13 e~Lk~ENshLrrEL~dNS~~l 33 (54)
T 1deb_A 13 EALKMENSNLRQELEDNSNHL 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHhhHHHH
Confidence 456666666666665544433
No 130
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=29.90 E-value=48 Score=22.14 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHHHHhhhh
Q 046202 124 QKLQLENSQLKEEHEKVSNLL 144 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~~~~ 144 (448)
..|..+|..|.+|..|+.+++
T Consensus 10 EeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 10 EELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHh
Confidence 458899999999999988765
No 131
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=29.87 E-value=1.4e+02 Score=25.90 Aligned_cols=112 Identities=11% Similarity=0.133 Sum_probs=60.1
Q ss_pred ceeeEEechhhHHHHhcChhhhhhhcccccccceEeEEecCCCCCCCCCceeeehhhhhccCccccCceeEEEEeeeeec
Q 046202 270 YSGMVTMNGMQLVEMLLDSDKWVDLFPTIVSKARTIQVLEPGINGNRNGCLQLMHEQMHILSPLVSPREYYFLRHCQQIE 349 (448)
Q Consensus 270 ~~~~V~~~~~~lve~lmD~~~W~~~Fp~iVs~a~t~~vi~~g~~g~~~g~lqlm~~e~~v~SPlvp~Re~~flRyc~q~~ 349 (448)
.+..|...+.++-++|.|-+.| .-+|.++...+ ++ .|.+|+.-|++..+ . . ..+| .++.|-...-
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e---~~-eg~~~~~vGsvR~~--g----g---~v~E-rl~~~D~~~~ 70 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCK---KV-GGGGGYSVGARRLL--N----G---EFLD-TLIAYSEIER 70 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEE---EE-SSCCTTCTTCEEEE--T----T---TEEE-EEEEEETTTT
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceEEEE---EE-ecCCCCCCCCEEEE--C----C---EEEE-EEEEEcCCCc
Confidence 3456677889999999999999 99998854323 33 45544456787765 1 1 2233 3333321100
Q ss_pred CCeEEEEEEecCCCCCCCCCcccccCCccceeeeCC-CCcceEEEEEeeeecC
Q 046202 350 LGLWVIVDVSYEWPKDNISSSHCWRLPSGFMIQDMT-NGCSNVTWLEHVEVDD 401 (448)
Q Consensus 350 ~g~w~vvDvS~d~~~~~~~~~~~~r~PSGclIq~~~-ng~skVtwveH~e~d~ 401 (448)
-=+|-|++-.+ +... ...+..=+=.-+.+.+ +|.|.|+|.-.++..+
T Consensus 71 ~~sY~ii~g~l----~~~~-~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~ 118 (160)
T 3p51_A 71 RIMYSMDEGPS----PVSS-GEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS 118 (160)
T ss_dssp EEEEEEEECST----TSST-TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESC
T ss_pred EEEEEEecCCC----cccc-cceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH
Confidence 11455655211 1000 0011111112244554 7889999987777654
No 132
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.66 E-value=1.5e+02 Score=23.49 Aligned_cols=38 Identities=32% Similarity=0.374 Sum_probs=25.2
Q ss_pred HHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHhhh
Q 046202 84 RAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVSNL 143 (448)
Q Consensus 84 ~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~~~ 143 (448)
-.+|.+|..+...+++.+ ..|+.||..|++-++.+...
T Consensus 33 L~EN~~Lh~~ie~~~eEi----------------------~~LkeEN~~L~el~~~~~~l 70 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEI----------------------ARLRKENKDLAEVAEHVQYM 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------------HHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
Confidence 456677776666666665 56788888887766655443
No 133
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=29.10 E-value=37 Score=29.12 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=34.9
Q ss_pred CCCCCCCCHHHHHHHHHhH-hcCCCCCHHHHHHHH-HHh--CCCcceeeeeccc
Q 046202 17 KITCHRHTTHQIQTLEAFF-KDCPHPDENQRRQLS-KEL--GLDLKQIKFWFQN 66 (448)
Q Consensus 17 Kr~rtr~T~eQl~~LE~~F-~~~~~Ps~~~R~~LA-~~L--gLs~rQVkvWFQN 66 (448)
+++|.++|.+|...+-..+ ..++..+..+....| .++ +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 4566789999999999998 677776654333322 177 6777777777644
No 134
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.49 E-value=1.3e+02 Score=24.12 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=13.4
Q ss_pred HHHHHHHHhHHHHHHHHhhhh
Q 046202 124 QKLQLENSQLKEEHEKVSNLL 144 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~~~~ 144 (448)
.++..|.+.||+|+.++..+|
T Consensus 48 e~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 48 EQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777766665554
No 135
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=28.06 E-value=1.1e+02 Score=23.06 Aligned_cols=36 Identities=31% Similarity=0.314 Sum_probs=26.1
Q ss_pred hhhHHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHH
Q 046202 78 ANNSVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKE 135 (448)
Q Consensus 78 ~e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~ 135 (448)
...++|-+-|..|..|...++..+ +.|..||..|+.
T Consensus 27 AkiQQLmkVN~~ls~Elr~mQ~~l----------------------q~LQsen~~Lr~ 62 (63)
T 2w6a_A 27 AKVQQLMKVNSSLSDELRKLQREI----------------------HKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHC
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHH----------------------HHHHhhhhhhcc
Confidence 345566677777777777777776 778888887763
No 136
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=27.94 E-value=65 Score=27.19 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=20.0
Q ss_pred hhHHHHHhhHHHHHhHHHHHHHhhccCCCCCC
Q 046202 79 NNSVLRAENERVHCENLAIREALKNVICPSCG 110 (448)
Q Consensus 79 e~~~L~~ene~L~~en~~l~~a~~~~~C~~Cg 110 (448)
....|.++..+|+.||..|++.+.+. +.|+
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~~--g~~~ 38 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKSS--GAVS 38 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcC--CCCC
Confidence 45678889999999999999999663 5554
No 137
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.93 E-value=96 Score=32.11 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=12.8
Q ss_pred HHHHHHHHhHHHHHHHHhh
Q 046202 124 QKLQLENSQLKEEHEKVSN 142 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~~ 142 (448)
+.+..|++.+++|+..+-.
T Consensus 561 ~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 561 AELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566777777777776544
No 138
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=27.32 E-value=25 Score=27.48 Aligned_cols=47 Identities=9% Similarity=0.130 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhH
Q 046202 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKA 73 (448)
Q Consensus 22 r~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr 73 (448)
.++..+..+|...|-.. ..-.++|..+|++...|+.+...-|.+.|+
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46777777777655332 235689999999999998877655555444
No 139
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=27.20 E-value=18 Score=30.61 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=20.0
Q ss_pred CCccchhhHHHHHHHHHhHHHHHHH
Q 046202 115 GIEERQRSLQKLQLENSQLKEEHEK 139 (448)
Q Consensus 115 ~~~e~~~e~~~L~~ENa~Lk~el~r 139 (448)
..+|+..+.++|.+||..||.++.+
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888889999999999998864
No 140
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=25.74 E-value=53 Score=27.18 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 22 r~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
.+++.|...+...|... ..-.++|..+|+++..|+.+...-|.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 57888888888875433 2346899999999999999987766666553
No 141
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.90 E-value=81 Score=21.23 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=14.4
Q ss_pred hhhHHHHHhhHHHHHhHHHHHHHh
Q 046202 78 ANNSVLRAENERVHCENLAIREAL 101 (448)
Q Consensus 78 ~e~~~L~~ene~L~~en~~l~~a~ 101 (448)
.++...+++.+.|+.+|..|.+++
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHH
Confidence 345556666666666666665554
No 142
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.69 E-value=82 Score=23.69 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=11.1
Q ss_pred HHHHHHHHhHHHHHHHHhh
Q 046202 124 QKLQLENSQLKEEHEKVSN 142 (448)
Q Consensus 124 ~~L~~ENa~Lk~el~r~~~ 142 (448)
.+|..+|..|+.|+..+..
T Consensus 40 ~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 40 EELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666665543
No 143
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.67 E-value=1.8e+02 Score=29.46 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHhh
Q 046202 120 QRSLQKLQLENSQLKEEHEKVSN 142 (448)
Q Consensus 120 ~~e~~~L~~ENa~Lk~el~r~~~ 142 (448)
.-+.++|+.||++|+.+++.+-.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhh
Confidence 33558899999999999886543
No 144
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=23.43 E-value=3e+02 Score=22.35 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=23.5
Q ss_pred eeeEEechhhHHHHhcChhhhhhhcccc
Q 046202 271 SGMVTMNGMQLVEMLLDSDKWVDLFPTI 298 (448)
Q Consensus 271 ~~~V~~~~~~lve~lmD~~~W~~~Fp~i 298 (448)
+..|...+..+-+.|.|.+.|.+-+|.+
T Consensus 18 ~~~i~ap~e~Vw~~l~D~~~~~~w~p~~ 45 (157)
T 2ns9_A 18 SFEVSKTPEEVFEFLTDPKRFSRAFPGF 45 (157)
T ss_dssp EEEESSCHHHHHHHHTCHHHHGGGSTTE
T ss_pred EEEEcCCHHHHHHHHcCHHHHHhhCCCc
Confidence 3456667889999999999999999986
No 145
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=22.96 E-value=31 Score=27.03 Aligned_cols=36 Identities=17% Similarity=0.522 Sum_probs=23.4
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHHhHH
Q 046202 28 IQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQNER 77 (448)
Q Consensus 28 l~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 77 (448)
+....-.|+.||||++.-..+ |. .|||.+|+..+.+
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-aR-------------RNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-AR-------------RNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-HH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-HH-------------HHHHHHHHHHHHH
Confidence 345556689999998653222 21 4889999886544
No 146
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=22.05 E-value=2.3e+02 Score=20.68 Aligned_cols=46 Identities=30% Similarity=0.420 Sum_probs=26.3
Q ss_pred HHHHHhhHHHHHhHHHHHHHhhccCCCCCCCCCCCCccchhhHHHHHHHHHhHHHHHHHHh
Q 046202 81 SVLRAENERVHCENLAIREALKNVICPSCGGPPFGIEERQRSLQKLQLENSQLKEEHEKVS 141 (448)
Q Consensus 81 ~~L~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~e~~~e~~~L~~ENa~Lk~el~r~~ 141 (448)
.+|-.+-+.|+.||..++..+ .|-+-...+|..|-.-+|+-+.++.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL---------------~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQEL---------------EDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHH---------------HhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 345556666666666666665 2233334556666666666666554
No 147
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.71 E-value=67 Score=26.39 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeeccccchHHhHH
Q 046202 22 RHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNKRTQTKAQ 74 (448)
Q Consensus 22 r~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 74 (448)
.+++.+...+...|-.. ..-.++|..+|+++..|+.+...-|.+.|+.
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47888888888765433 2346899999999999998887666666554
No 148
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.01 E-value=47 Score=26.85 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHhHhcCCCCCHHHHHHHHHHhCCCcceeeeecccc
Q 046202 20 CHRHTTHQIQTLEAFFKDCPHPDENQRRQLSKELGLDLKQIKFWFQNK 67 (448)
Q Consensus 20 rtr~T~eQl~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNR 67 (448)
...+|+.+..+|...+.-. .-.++|..+|+++..|+.+..+-
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri 73 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSA 73 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHH
Confidence 4469999999998865433 23789999999999988766543
Done!