BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046205
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
Length = 561
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/366 (55%), Positives = 251/366 (68%), Gaps = 22/366 (6%)
Query: 6 VTRKETAPIDGQKPGTSGLRKKVKVF-TQPNYLHNFVQSTFNALSAEKVRGATLVVSGDG 64
VT K A D QKPGTSGLRK+VKVF + NY NF+QS + + + + ATLVV GDG
Sbjct: 4 VTVKTKAYPD-QKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDG 62
Query: 65 RYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTAS 124
R+Y K+AIQ+I ++AAANG+ R+ IGQNG+LSTPAVS +IR+ KA G ILTAS
Sbjct: 63 RFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRK------IKAIGGIILTAS 116
Query: 125 HNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISAVGVTSFG 184
HNPGGPN DFGIK+N+ NGGPAPE ITDKI++ +KTI+EY+I DL VD+ +G F
Sbjct: 117 HNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDL-KVDLGVLGKQQFD 175
Query: 185 GPE--GQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSP-KFTFCYDALHGVAGAYAKRI 241
F VE+ DS Y ++++IFDF +++LLS P + DA+HGV G Y K+I
Sbjct: 176 LENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKI 235
Query: 242 FVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADG 301
EELGA +S +NC P EDFGG HPDPNLTYA +LV M G+ +FGAA DG
Sbjct: 236 LCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEH-------DFGAAFDG 288
Query: 302 DADRNMILGKR-FFVTPSDSVAIIAANAVESIPYF-SAGLKGVARSMPTSAALDVVAKNL 359
D DRNMILGK FFV PSDSVA+IAAN + SIPYF G++G ARSMPTS ALD VA
Sbjct: 289 DGDRNMILGKHGFFVNPSDSVAVIAAN-IFSIPYFQQTGVRGFARSMPTSGALDRVANAT 347
Query: 360 NLKFFE 365
+ +E
Sbjct: 348 KIALYE 353
>pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1JDY|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|3PMG|A Chain A, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
pdb|3PMG|B Chain B, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
Length = 561
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/366 (55%), Positives = 250/366 (68%), Gaps = 22/366 (6%)
Query: 6 VTRKETAPIDGQKPGTSGLRKKVKVF-TQPNYLHNFVQSTFNALSAEKVRGATLVVSGDG 64
VT K A D QKPGTSGLRK+VKVF + NY NF+QS + + + + ATLVV GDG
Sbjct: 4 VTVKTKAYPD-QKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDG 62
Query: 65 RYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTAS 124
R+Y K+AIQ+I ++AAANG+ R+ IGQNG+LSTPAVS +IR+ KA G ILTA
Sbjct: 63 RFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRK------IKAIGGIILTAX 116
Query: 125 HNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISAVGVTSFG 184
HNPGGPN DFGIK+N+ NGGPAPE ITDKI++ +KTI+EY+I DL VD+ +G F
Sbjct: 117 HNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDL-KVDLGVLGKQQFD 175
Query: 185 GPE--GQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSP-KFTFCYDALHGVAGAYAKRI 241
F VE+ DS Y ++++IFDF +++LLS P + DA+HGV G Y K+I
Sbjct: 176 LENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKI 235
Query: 242 FVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADG 301
EELGA +S +NC P EDFGG HPDPNLTYA +LV M G+ +FGAA DG
Sbjct: 236 LCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEH-------DFGAAFDG 288
Query: 302 DADRNMILGKR-FFVTPSDSVAIIAANAVESIPYF-SAGLKGVARSMPTSAALDVVAKNL 359
D DRNMILGK FFV PSDSVA+IAAN + SIPYF G++G ARSMPTS ALD VA
Sbjct: 289 DGDRNMILGKHGFFVNPSDSVAVIAAN-IFSIPYFQQTGVRGFARSMPTSGALDRVANAT 347
Query: 360 NLKFFE 365
+ +E
Sbjct: 348 KIALYE 353
>pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
Length = 572
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/362 (53%), Positives = 239/362 (66%), Gaps = 11/362 (3%)
Query: 11 TAPIDGQKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVR-GATLVVSGDGRYYSK 69
T P GQKPGTSGLRKKV TQPNYL NFVQS FN L ++++ L V GDGRY+++
Sbjct: 13 TQPYAGQKPGTSGLRKKVSEATQPNYLENFVQSIFNTLRKDELKPKNVLFVGGDGRYFNR 72
Query: 70 DAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGG 129
AI I ++A AN + V +GQ GL+STPA S IR +V + G ILTASHNPGG
Sbjct: 73 QAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIR-KVNEEVGNCIGGIILTASHNPGG 131
Query: 130 PNE-DFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIA--EDLPDVDISAVGVTSFGG- 185
DFGIK+N+ G PAPE TD+IY +T IKEY E +++ +GV F G
Sbjct: 132 KEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEGT 191
Query: 186 --PEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFV 243
+ F+V+V D+ DY +LM+ +FDF+L++ L S+ F+F +D +HGVAG YAK IF
Sbjct: 192 RLEKSHFEVKVVDTVQDYTQLMQKLFDFDLLKGLFSNKDFSFRFDGMHGVAGPYAKHIFG 251
Query: 244 EELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDA 303
LG + SLLNC P EDFGGGHPDPNLTYA +LV + + K P+FGAA DGDA
Sbjct: 252 TLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACDGDA 311
Query: 304 DRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKF 363
DRNMILG++FFVTPSDS+A+IAANA F GL G ARSMPTS ALD VA +K
Sbjct: 312 DRNMILGRQFFVTPSDSLAVIAANAN---LIFKNGLLGAARSMPTSGALDKVAAKNGIKL 368
Query: 364 FE 365
FE
Sbjct: 369 FE 370
>pdb|3OLP|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
pdb|3OLP|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
Length = 570
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 140/353 (39%), Gaps = 30/353 (8%)
Query: 18 KPGTSGLRKKV--KVFTQPNYLHNFVQSTFNALSAEKVRGAT---LVVSGDGRYYSKDAI 72
K GTSG R F +P+ L + A++ E+ + V D S+ A
Sbjct: 65 KFGTSGHRGSAGRHSFNEPHIL-----AIAQAIAEERAKNGITGPCYVGKDTHALSEPAF 119
Query: 73 QIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNE 132
+ ++ AANGV + NG TPAVS I G A G ++T SHNP E
Sbjct: 120 ISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADG-IVITPSHNP---PE 175
Query: 133 DFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISAVGVTSFGGPEGQFDV 192
D GIKYN NGGPA +T K+ E+ A L + V S V
Sbjct: 176 DGGIKYNPPNGGPADTNVT-KVVEDR--------ANALLAGGLQGVKRISLDAAMASGHV 226
Query: 193 EVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESS 252
+ D +V+ + I D I+K T D L G Y KRI E +
Sbjct: 227 KAVDLVQPFVEGLADIVDMAAIQK----AGLTLGVDPLGGSGIEYWKRI--AEHYKLNLT 280
Query: 253 LLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR 312
L+N + F H D + + + + + + A D D DR+ I+
Sbjct: 281 LVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPA 340
Query: 313 FFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365
+ P+ +A+ + P + + V +++ +SA +D V +L K E
Sbjct: 341 GLMNPNHYLAVAINYLFQHRPLWGKDV-AVGKTLVSSAMIDRVVNDLGRKLVE 392
>pdb|3NA5|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens.
pdb|3NA5|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens
Length = 570
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 140/353 (39%), Gaps = 30/353 (8%)
Query: 18 KPGTSGLRKKV--KVFTQPNYLHNFVQSTFNALSAEKVRGAT---LVVSGDGRYYSKDAI 72
K GTSG R F +P+ L + A++ E+ + V D S+ A
Sbjct: 65 KFGTSGHRGSAGRHSFNEPHIL-----AIAQAIAEERAKNGITGPCYVGKDTHALSEPAF 119
Query: 73 QIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNE 132
+ ++ AANGV + NG TPAVS I G A G ++T SHNP E
Sbjct: 120 ISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADG-IVITPSHNP---PE 175
Query: 133 DFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISAVGVTSFGGPEGQFDV 192
D GIKYN NGGPA +T K+ E+ A L + V S V
Sbjct: 176 DGGIKYNPPNGGPADTNVT-KVVEDR--------ANALLAGGLQGVKRISLDAAMASGHV 226
Query: 193 EVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESS 252
+ D +V+ + I D I+K T D L G Y KRI E +
Sbjct: 227 KAVDLVQPFVEGLADIVDMAAIQK----AGLTLGVDPLGGSGIEYWKRI--AEHYKLNLT 280
Query: 253 LLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR 312
L+N + F H D + + + + + + A D D DR+ I+
Sbjct: 281 LVNDQVDQTFRFMHLDKDGAIRMDCSSEXAMAGLLALRDKFDLAFANDPDYDRHGIVTPA 340
Query: 313 FFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365
+ P+ +A+ + P + + V +++ +SA +D V +L K E
Sbjct: 341 GLMNPNHYLAVAINYLFQHRPLWGKDV-AVGKTLVSSAMIDRVVNDLGRKLVE 392
>pdb|2FUV|A Chain A, Phosphoglucomutase From Salmonella Typhimurium.
pdb|2FUV|B Chain B, Phosphoglucomutase From Salmonella Typhimurium
Length = 549
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 138/353 (39%), Gaps = 30/353 (8%)
Query: 18 KPGTSGLRKKV--KVFTQPNYLHNFVQSTFNALSAEKVRGAT---LVVSGDGRYYSKDAI 72
K GTSG R F +P+ L + A++ E+ + V D S+ A
Sbjct: 44 KFGTSGHRGSAGRHSFNEPHIL-----AIAQAIAEERAKNGITGPCYVGKDTHALSEPAF 98
Query: 73 QIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNE 132
+ ++ AANGV + NG TPAVS I G A G ++T SHNP E
Sbjct: 99 ISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADG-IVITPSHNP---PE 154
Query: 133 DFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISAVGVTSFGGPEGQFDV 192
D GIKYN NGGPA +T K+ E+ A L + V S V
Sbjct: 155 DGGIKYNPPNGGPADTNVT-KVVEDR--------ANALLAGGLQGVKRISLDAAXASGHV 205
Query: 193 EVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESS 252
+ D +V+ + I D I+K T D L G Y KRI E +
Sbjct: 206 KAVDLVQPFVEGLADIVDXAAIQK----AGLTLGVDPLGGSGIEYWKRI--AEHYKLNLT 259
Query: 253 LLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR 312
L+N + F H D + + + + + A D D DR+ I+
Sbjct: 260 LVNDQVDQTFRFXHLDKDGAIRXDCSSECAXAGLLALRDKFDLAFANDPDYDRHGIVTPA 319
Query: 313 FFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365
P+ +A+ + P + + V +++ +SA +D V +L K E
Sbjct: 320 GLXNPNHYLAVAINYLFQHRPLWGKDV-AVGKTLVSSAXIDRVVNDLGRKLVE 371
>pdb|2Z0F|A Chain A, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
pdb|2Z0F|B Chain B, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
Length = 524
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 138/376 (36%), Gaps = 48/376 (12%)
Query: 2 VMFNVTRKETAPIDGQKPGTSGLRKKV--KVFTQPNYLHNFVQSTFNALSAEKVRGATLV 59
+ + T P++G + GTSG R FT+ + L + L L
Sbjct: 9 LYYEATPDPQNPLEGVRFGTSGHRGSSLKATFTEAHVL--AIAQAIAELRPSFGATGPLF 66
Query: 60 VSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAF 119
++ D S+ A + AA+G+ TP VS I E +KA G
Sbjct: 67 LAKDTHALSEPAWATALSVFAAHGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADG-V 125
Query: 120 ILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISAVG 179
+LT SHNP ED G KYN GGPA IT I E + + + G
Sbjct: 126 LLTPSHNP---PEDGGFKYNPPTGGPANARITRAIEERANALLQEGLK-----------G 171
Query: 180 VTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAK 239
V E + FD A YV+ + D E IR + D L G + +
Sbjct: 172 VKRLPLREALARAKPFDYAGLYVEKVAEAVDLEAIR----ASGLRIGVDPLGGASLRVWE 227
Query: 240 RIF------VEELGAQESSLLNCTPKEDFGGGHPDPNLTYAK----ELVARMGLGKSNTQ 289
R+ +E + PK+ G D + YA L R L N
Sbjct: 228 RLAESHGLPLEVVNPTLDPTFRFMPKDHDGKIRMDCSSPYAMAGLLALKDRFDLAIGN-- 285
Query: 290 DEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTS 349
D DADR+ I+ R + P+ +A + + + A V ++ TS
Sbjct: 286 ----------DPDADRHGIVTPRGLMNPNHYLAAALHHLYTTRSWPGA---KVGKTAVTS 332
Query: 350 AALDVVAKNLNLKFFE 365
A LD VA+ L + +E
Sbjct: 333 ALLDRVAQALGREVYE 348
>pdb|1TUO|A Chain A, Crystal Structure Of Putative Phosphomannomutase From
Thermus Thermophilus Hb8
Length = 464
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 135/327 (41%), Gaps = 56/327 (17%)
Query: 3 MFNVTRKETAPIDGQKPGTSGLRKKV-KVFTQPNYLHNFVQSTFNALSAEKVRGATLVVS 61
M + + +API + GT G R + + FT LH ++ L RG LVV
Sbjct: 1 MCYASMEMSAPI---RFGTEGFRGVIAREFTFAT-LHRLAEAYGRHLLE---RGGGLVVV 53
Query: 62 G-DGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFI 120
G D R+ + + ++ A G++ V + G + TP +S +R KA G +
Sbjct: 54 GHDTRFLADAFARALSGHLAGMGLKVVLL--KGPVPTPLLSFAVRH------LKAAGGAM 105
Query: 121 LTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISAVGV 180
LTASHNP + G+K+ GGP + E K I E L + A+
Sbjct: 106 LTASHNP---PQYLGVKFKDATGGPIAQ-------EEAKAI------EALVPEEARAL-- 147
Query: 181 TSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKR 240
EG + E D Y + +K+ D K LS +D++ G AGA +
Sbjct: 148 ------EGAY--ETLDLREAYFEALKAHLDL----KALSGFSGVLYHDSMGG-AGAGFLK 194
Query: 241 IFVEELGAQ-ESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAA 299
F+ +G + + P F G +P+P +A +G + PP F A
Sbjct: 195 GFLRHVGLEIPVRPIREEPHPLFHGVNPEPIPKNLGVTLAVLG------PETPPSFAVAT 248
Query: 300 DGDADR-NMILGKRFFVTPSDSVAIIA 325
DGDADR ++L F P + +A
Sbjct: 249 DGDADRVGVVLPGGVFFNPHQVLTTLA 275
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 106/266 (39%), Gaps = 44/266 (16%)
Query: 93 GLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITD 152
G+ TPAV + A G ++TASHNP N GIK NG +
Sbjct: 76 GIAPTPAVQWATKH------FNADGGAVITASHNPPEYN---GIKLLEPNGMGLKK---- 122
Query: 153 KIYENTKTIKEYSIAEDLPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFE 212
E ++E ED +G +V D Y++ +KS D E
Sbjct: 123 ---EREAIVEELFFKEDFDRAKWYEIG-----------EVRREDIIKPYIEAIKSKVDVE 168
Query: 213 LIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLT 272
I+K K D +G AG+ + ELG + ++ N P F +P+PN
Sbjct: 169 AIKK----RKPFVVVDTSNG-AGSLTLPYLLRELGCKVITV-NAQPDGYFPARNPEPNEE 222
Query: 273 YAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVESI 332
KE M + K+ D FG A DGDADR + + + D + A+AV +
Sbjct: 223 NLKEF---MEIVKALGAD----FGVAQDGDADRAVFIDENGRFIQGDKTFALVADAV--L 273
Query: 333 PYFSAGLKGVARSMPTSAALDVVAKN 358
GL + ++ TS LD +AK
Sbjct: 274 KEKGGGL--LVTTVATSNLLDDIAKK 297
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 193 EVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESS 252
E +D A YV+ + + D +L R L DA +GVAG A R+F + LG +
Sbjct: 173 EQYDVADQYVE--RIVGDIKLTRPL------KLVVDAGNGVAGPLATRLF-KALGCELVE 223
Query: 253 LLNCTPKEDFGGGHPDP-NLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGK 311
L +F HPDP + ++++A++ + E G A DGD DR ++ K
Sbjct: 224 LFTDI-DGNFPNHHPDPAHPENLQDVIAKL-------KATDAEIGFAFDGDGDRLGVVTK 275
Query: 312 RFFVTPSDSVAIIAANAVES 331
+ D ++ A V S
Sbjct: 276 DGQIIYPDRQLMLFAEEVLS 295
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
ITS SUBSTRATE
pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
Length = 463
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 211 FELIRKLLSSPK-FTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDP 269
F+ IR ++ K D +GVAG A ++ +E LG L C +F HPDP
Sbjct: 160 FKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQL-IEALGCSVIPLY-CEVDGNFPNHHPDP 217
Query: 270 ----NLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADR-NMILGKRFFVTPSDSVAII 324
NL K+L+A++ + E + G A DGD DR ++ + P + +
Sbjct: 218 GKPENL---KDLIAKV-------KAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLF 267
Query: 325 AANAVESIP 333
A + V P
Sbjct: 268 AKDVVSRNP 276
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 211 FELIRKLLSSPK-FTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDP 269
F+ IR ++ K D +GVAG A ++ +E LG L C +F HPDP
Sbjct: 159 FKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQL-IEALGCSVIPLY-CEVDGNFPNHHPDP 216
Query: 270 ----NLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADR-NMILGKRFFVTPSDSVAII 324
NL K+L+A++ + E + G A DGD DR ++ + P + +
Sbjct: 217 GKPENL---KDLIAKV-------KAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLF 266
Query: 325 AANAVESIP 333
A + V P
Sbjct: 267 AKDVVSRNP 275
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 211 FELIRKLLSSPK-FTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDP 269
F+ IR ++ K D +GVAG A ++ +E LG L C +F HPDP
Sbjct: 160 FKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQL-IEALGCSVIPLY-CEVDGNFPNHHPDP 217
Query: 270 ----NLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADR-NMILGKRFFVTPSDSVAII 324
NL K+L+A++ + E + G A DGD DR ++ + P + +
Sbjct: 218 GKPENL---KDLIAKV-------KAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLF 267
Query: 325 AANAVESIP 333
A + V P
Sbjct: 268 AKDVVSRNP 276
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 211 FELIRKLLSSPK-FTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDP 269
F+ IR ++ K D +GVAG A ++ +E LG L C +F HPDP
Sbjct: 159 FKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQL-IEALGCSVIPLY-CEVDGNFPNHHPDP 216
Query: 270 ----NLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADR-NMILGKRFFVTPSDSVAII 324
NL K+L+A++ + E + G A DGD DR ++ + P + +
Sbjct: 217 GKPENL---KDLIAKV-------KAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLF 266
Query: 325 AANAVESIP 333
A + V P
Sbjct: 267 AKDVVSRNP 275
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 211 FELIRKLLSSPK-FTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDP 269
F+ IR ++ K D +GVAG A ++ +E LG L C +F HPDP
Sbjct: 160 FKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQL-IEALGCSVIPLY-CEVDGNFPNHHPDP 217
Query: 270 ----NLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADR-NMILGKRFFVTPSDSVAII 324
NL K+L+A++ + E + G A DGD DR ++ + P + +
Sbjct: 218 GKPENL---KDLIAKV-------KAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLF 267
Query: 325 AANAVESIP 333
A + V P
Sbjct: 268 AKDVVSRNP 276
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 211 FELIRKLLSSPK-FTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDP 269
F+ IR ++ K D +GVAG A ++ +E LG L C +F HPDP
Sbjct: 160 FKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQL-IEALGCSVIPLY-CEVDGNFPNHHPDP 217
Query: 270 ----NLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADR-NMILGKRFFVTPSDSVAII 324
NL K+L+A++ + E + G A DGD DR ++ + P + +
Sbjct: 218 GKPENL---KDLIAKV-------KAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLF 267
Query: 325 AANAVESIP 333
A + V P
Sbjct: 268 AKDVVSRNP 276
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 211 FELIRKLLSSPK-FTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDP 269
F+ IR ++ K D +GVAG A ++ +E LG L C +F HPDP
Sbjct: 160 FKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQL-IEALGCSVIPLY-CEVDGNFPNHHPDP 217
Query: 270 ----NLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADR-NMILGKRFFVTPSDSVAII 324
NL K+L+A++ + E + G A DGD DR ++ + P + +
Sbjct: 218 GKPENL---KDLIAKV-------KAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLF 267
Query: 325 AANAVESIP 333
A + V P
Sbjct: 268 AKDVVSRNP 276
>pdb|1YW0|A Chain A, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13.
pdb|1YW0|B Chain B, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13.
pdb|1YW0|C Chain C, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13.
pdb|1YW0|D Chain D, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13
Length = 276
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 150 ITDKIYENT-KTIKEYSIAEDLPDVD 174
+ ++IYENT + +EYS+ EDL DV+
Sbjct: 183 VFERIYENTDRYWREYSLCEDLVDVE 208
>pdb|2NW7|A Chain A, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW7|B Chain B, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW7|C Chain C, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW7|D Chain D, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW9|A Chain A, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
6-Fluoro-Tryptophan. Northeast Structural Genomics
Target Xcr13
pdb|2NW9|B Chain B, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
6-Fluoro-Tryptophan. Northeast Structural Genomics
Target Xcr13
pdb|2NW8|A Chain A, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
Tryptophan. Northeast Structural Genomics Target Xcr13.
pdb|2NW8|B Chain B, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
Tryptophan. Northeast Structural Genomics Target Xcr13
Length = 306
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 150 ITDKIYENT-KTIKEYSIAEDLPDVD 174
+ ++IYENT + +EYS+ EDL DV+
Sbjct: 205 VFERIYENTDRYWREYSLCEDLVDVE 230
>pdb|3BK9|A Chain A, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|B Chain B, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|C Chain C, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|D Chain D, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|E Chain E, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|F Chain F, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|G Chain G, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|H Chain H, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
Length = 306
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 150 ITDKIYENT-KTIKEYSIAEDLPDVD 174
+ ++IYENT + +EYS+ EDL DV+
Sbjct: 205 VFERIYENTDRYWREYSLCEDLVDVE 230
>pdb|3E08|A Chain A, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|B Chain B, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|C Chain C, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|D Chain D, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|E Chain E, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|F Chain F, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|G Chain G, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|H Chain H, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
Length = 298
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 150 ITDKIYENT-KTIKEYSIAEDLPDVD 174
+ ++IYENT + +EYS+ EDL DV+
Sbjct: 205 VFERIYENTDRYWREYSLCEDLVDVE 230
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 101/259 (38%), Gaps = 52/259 (20%)
Query: 64 GRYYSKDAIQIITKMAAANGVRRVWIGQNGLLS------------TPAVSAVIRERVGSD 111
G ++ K++ ++ + A G V I + GLLS TPA+ ++ +G D
Sbjct: 31 GTFFGKNSKILVGRDVRAGGDMLVKIVEGGLLSVGVEVYDGGMAPTPALQYAVK-TLGYD 89
Query: 112 GSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLP 171
G ++TASHNP N GIK +D G + E I++ E
Sbjct: 90 G-----GVVITASHNPAPYN---GIKV-VDKDG------IEIRREKENEIEDLFFTERFN 134
Query: 172 DVDISAVGVTSFGGPEGQFDVEVFDSA-SDYVKLMKSIFDFELIRKLLSSPKFTFCYDAL 230
++ S++ +V+ D S YV + S D E I+K + D
Sbjct: 135 TIEWSSLTT----------EVKREDRVISTYVNGILSHVDIEKIKK----KNYKVLIDPA 180
Query: 231 HGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQD 290
+ V GA + + LG + + +N F P+P KE + K +
Sbjct: 181 NSV-GALSTPLVARALGCKIYT-INGNLDPLFSARQPEPTFDSLKETAEVVKTLKVD--- 235
Query: 291 EPPEFGAAADGDADRNMIL 309
G A DGDADR + +
Sbjct: 236 ----LGVAHDGDADRAIFI 250
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 90/237 (37%), Gaps = 48/237 (20%)
Query: 93 GLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITD 152
G++STP V+ + + A +++ASHNP +D GIK+ +G +TD
Sbjct: 96 GVISTPGVAYLTK------ALDAQAGVMISASHNP---VQDNGIKFFGSDGFK----LTD 142
Query: 153 KIYENTKTIKEYSIAEDLPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFE 212
+ + + + + E LP + +G S + F+ Y++ +K + +
Sbjct: 143 EQEAEIEALLDKEVDE-LPRPTGTNLGQVS----------DYFEGGQKYLQYIKQTVEED 191
Query: 213 LIRKLLSSPKFTFCYDALHGVAGAYAKRIFVE---ELGAQESSLLNCTPKEDFGGGHPDP 269
D HG + A +F + ++ +S + G HP+
Sbjct: 192 F-------SGLHIALDCAHGATSSLAPYLFADLEADISTMGTSPNGMNINDGVGSTHPEV 244
Query: 270 NLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAA 326
KE A +GL A DGD DR + + ++ + D + I A
Sbjct: 245 LAELVKEKGADIGL--------------AFDGDGDRLIAVDEKGNIVDGDQIMFICA 287
>pdb|1HYS|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 214
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 43 STFNALSAEKVRGATLVVSGDGRYYSKD--AIQIITKMAAANGVRRVWIGQNGLLSTPAV 100
S F S + G VV +Y KD I AAANGV W Q+ ST ++
Sbjct: 116 SIFPPSSEQLTSGGASVVCFLNNFYPKDINVAWAIDGSAAANGVLNSWTDQDSKDSTYSM 175
Query: 101 SAVIRERVGSDGSKATGAFILTASH 125
S+ + + +D +A ++ A+H
Sbjct: 176 SSTL--TLTADAYEAANSYTCAATH 198
>pdb|2HMI|C Chain C, Hiv-1 Reverse TranscriptaseFRAGMENT OF FAB 28DNA COMPLEX
pdb|1J5O|L Chain L, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 214
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 43 STFNALSAEKVRGATLVVSGDGRYYSKD--AIQIITKMAAANGVRRVWIGQNGLLSTPAV 100
S F S + G VV +Y KD I AAANGV W Q+ ST ++
Sbjct: 116 SIFPPSSEQLTSGGASVVCFLNNFYPKDINVAWAIDGSAAANGVLNSWTDQDSKDSTYSM 175
Query: 101 SAVIRERVGSDGSKATGAFILTASH 125
S+ + + +D +A ++ A+H
Sbjct: 176 SSTL--TLTADEYEAANSYTCAATH 198
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 191 DVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYD 228
DV +FD S Y+ + + + ++IR LL+ K+ C +
Sbjct: 241 DVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,313,876
Number of Sequences: 62578
Number of extensions: 497058
Number of successful extensions: 1425
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1394
Number of HSP's gapped (non-prelim): 28
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)