Query 046205
Match_columns 365
No_of_seqs 134 out of 1252
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02307 phosphoglucomutase 100.0 1.3E-62 2.9E-67 504.6 37.6 360 1-365 7-367 (579)
2 cd03085 PGM1 Phosphoglucomutas 100.0 3.1E-62 6.6E-67 500.8 36.8 340 9-365 3-343 (548)
3 cd05800 PGM_like2 This PGM-lik 100.0 3.7E-62 8E-67 493.7 34.4 303 17-365 1-304 (461)
4 cd05803 PGM_like4 This PGM-lik 100.0 6.5E-62 1.4E-66 489.7 32.4 302 18-365 1-303 (445)
5 PRK14317 glmM phosphoglucosami 100.0 1.6E-61 3.5E-66 489.0 33.3 311 7-365 7-318 (465)
6 cd03089 PMM_PGM The phosphoman 100.0 2.9E-61 6.4E-66 484.8 31.8 292 18-365 1-294 (443)
7 COG1109 {ManB} Phosphomannomut 100.0 9E-61 2E-65 483.1 33.1 303 13-365 4-308 (464)
8 PRK14321 glmM phosphoglucosami 100.0 5.4E-61 1.2E-65 483.3 31.0 292 16-365 2-294 (449)
9 cd05805 MPG1_transferase GTP-m 100.0 7.8E-61 1.7E-65 481.5 31.5 296 18-365 1-297 (441)
10 PRK14315 glmM phosphoglucosami 100.0 9.9E-61 2.1E-65 481.4 31.9 301 15-365 2-306 (448)
11 PRK14324 glmM phosphoglucosami 100.0 8.6E-61 1.9E-65 481.2 30.7 300 17-365 2-305 (446)
12 cd03087 PGM_like1 This archaea 100.0 1.4E-60 2.9E-65 479.5 30.7 291 18-365 1-293 (439)
13 PRK10887 glmM phosphoglucosami 100.0 2.9E-60 6.4E-65 477.3 32.1 298 16-365 1-300 (443)
14 cd05802 GlmM GlmM is a bacteri 100.0 3.1E-60 6.7E-65 476.2 32.1 298 18-365 1-299 (434)
15 PRK14314 glmM phosphoglucosami 100.0 5.6E-60 1.2E-64 476.2 31.8 302 15-365 2-307 (450)
16 PRK14316 glmM phosphoglucosami 100.0 2.3E-59 5E-64 471.6 31.8 301 17-365 2-303 (448)
17 PRK14318 glmM phosphoglucosami 100.0 3.3E-59 7.1E-64 470.3 32.2 300 16-365 2-305 (448)
18 PRK07564 phosphoglucomutase; V 100.0 7.7E-59 1.7E-63 476.9 35.5 327 3-365 25-366 (543)
19 PTZ00150 phosphoglucomutase-2- 100.0 2.3E-59 4.9E-64 484.2 31.7 322 5-365 33-374 (584)
20 TIGR01455 glmM phosphoglucosam 100.0 3.7E-59 8.1E-64 469.4 32.2 300 19-365 1-302 (443)
21 PLN02371 phosphoglucosamine mu 100.0 4.9E-59 1.1E-63 481.0 31.5 309 16-365 65-395 (583)
22 PRK09542 manB phosphomannomuta 100.0 5.4E-59 1.2E-63 468.3 29.5 292 19-365 1-295 (445)
23 PRK14323 glmM phosphoglucosami 100.0 1.1E-58 2.3E-63 465.7 31.3 294 15-365 2-297 (440)
24 PRK15414 phosphomannomutase Cp 100.0 7.9E-59 1.7E-63 468.2 30.2 295 17-364 5-305 (456)
25 cd05799 PGM2 This CD includes 100.0 2.3E-58 5.1E-63 468.9 30.9 310 16-365 1-332 (487)
26 TIGR01132 pgm phosphoglucomuta 100.0 6.5E-58 1.4E-62 470.0 34.4 315 16-365 38-367 (543)
27 PRK14320 glmM phosphoglucosami 100.0 4.9E-58 1.1E-62 461.2 31.1 295 17-364 3-299 (443)
28 cd05801 PGM_like3 This bacteri 100.0 2.8E-57 6E-62 463.6 34.1 319 12-365 16-351 (522)
29 PRK14322 glmM phosphoglucosami 100.0 2.7E-57 5.9E-62 454.1 29.5 290 16-365 3-293 (429)
30 PRK14319 glmM phosphoglucosami 100.0 2E-56 4.4E-61 447.9 30.3 287 17-364 2-289 (430)
31 cd03088 ManB ManB is a bacteri 100.0 1.8E-53 3.9E-58 429.8 29.0 285 18-364 1-287 (459)
32 KOG1220 Phosphoglucomutase/pho 100.0 2.2E-50 4.7E-55 397.0 26.4 328 6-365 49-391 (607)
33 KOG0625 Phosphoglucomutase [Ca 100.0 4.7E-49 1E-53 372.4 27.6 346 3-365 2-350 (558)
34 COG0033 Pgm Phosphoglucomutase 100.0 1.5E-46 3.3E-51 358.9 25.6 333 8-365 7-345 (524)
35 cd03084 phosphohexomutase The 100.0 6.4E-46 1.4E-50 363.5 24.9 242 18-365 1-244 (355)
36 PF02878 PGM_PMM_I: Phosphoglu 100.0 7.5E-35 1.6E-39 247.9 14.6 132 16-160 1-133 (137)
37 cd03086 PGM3 PGM3 (phosphogluc 100.0 6.6E-30 1.4E-34 259.8 22.4 214 54-364 101-334 (513)
38 PTZ00302 N-acetylglucosamine-p 99.9 3.9E-24 8.5E-29 219.0 23.3 225 55-364 152-398 (585)
39 PLN02895 phosphoacetylglucosam 99.9 4.3E-24 9.2E-29 217.3 21.9 215 55-364 127-366 (562)
40 PF02879 PGM_PMM_II: Phosphogl 99.9 1.4E-21 2.9E-26 158.4 11.8 100 199-311 1-102 (104)
41 KOG2537 Phosphoglucomutase/pho 99.0 1.2E-08 2.6E-13 100.7 15.3 51 55-108 124-174 (539)
42 PLN02895 phosphoacetylglucosam 98.6 1.3E-07 2.9E-12 97.2 8.4 63 72-153 31-93 (562)
43 PTZ00302 N-acetylglucosamine-p 98.5 1.5E-07 3.2E-12 97.5 5.0 43 115-160 75-117 (585)
44 cd03086 PGM3 PGM3 (phosphogluc 98.5 1.4E-06 3E-11 89.5 11.9 41 116-159 36-76 (513)
45 KOG2537 Phosphoglucomutase/pho 96.7 0.00092 2E-08 66.8 2.7 156 198-363 186-354 (539)
46 PF02880 PGM_PMM_III: Phosphog 96.7 0.0014 2.9E-08 53.7 2.8 45 317-365 2-46 (113)
47 PRK05571 ribose-5-phosphate is 85.6 4.8 0.0001 34.6 7.9 33 57-91 2-34 (148)
48 PRK12613 galactose-6-phosphate 83.8 5.5 0.00012 33.9 7.4 43 57-104 2-46 (141)
49 PF02502 LacAB_rpiB: Ribose/Ga 83.3 5.9 0.00013 33.7 7.4 35 57-96 1-35 (140)
50 TIGR01118 lacA galactose-6-pho 82.9 7.6 0.00016 33.1 7.9 46 57-104 2-47 (141)
51 PRK08621 galactose-6-phosphate 82.3 8.2 0.00018 32.9 7.8 48 57-106 2-49 (142)
52 TIGR01120 rpiB ribose 5-phosph 82.2 7.9 0.00017 33.0 7.8 32 57-90 1-32 (143)
53 COG0426 FpaA Uncharacterized f 81.6 8.2 0.00018 38.4 8.7 74 38-123 231-305 (388)
54 PTZ00215 ribose 5-phosphate is 81.2 9 0.00019 33.0 7.8 34 56-91 3-38 (151)
55 TIGR01119 lacB galactose-6-pho 80.6 9.8 0.00021 33.5 8.0 32 57-90 2-33 (171)
56 PRK08622 galactose-6-phosphate 77.7 13 0.00028 32.7 7.8 32 57-90 2-33 (171)
57 TIGR02133 RPI_actino ribose 5- 77.3 14 0.0003 31.8 7.7 32 57-90 2-33 (148)
58 TIGR00689 rpiB_lacA_lacB sugar 76.7 6 0.00013 33.8 5.4 31 58-90 1-31 (144)
59 PRK12615 galactose-6-phosphate 76.4 14 0.00031 32.5 7.7 32 57-90 2-33 (171)
60 COG0698 RpiB Ribose 5-phosphat 75.9 10 0.00023 32.6 6.6 31 57-89 2-32 (151)
61 PRK02261 methylaspartate mutas 70.6 30 0.00064 29.2 8.1 47 55-107 3-53 (137)
62 PRK08621 galactose-6-phosphate 67.9 22 0.00049 30.3 6.8 70 224-310 2-73 (142)
63 TIGR01118 lacA galactose-6-pho 65.7 29 0.00062 29.6 7.0 71 223-310 1-73 (141)
64 cd02072 Glm_B12_BD B12 binding 62.0 22 0.00048 29.7 5.6 42 60-107 7-49 (128)
65 cd02069 methionine_synthase_B1 61.1 45 0.00098 30.3 8.0 50 55-107 88-138 (213)
66 TIGR02133 RPI_actino ribose 5- 60.9 52 0.0011 28.2 7.8 74 223-310 1-76 (148)
67 TIGR02370 pyl_corrinoid methyl 59.1 1.3E+02 0.0027 26.9 10.5 63 56-127 85-147 (197)
68 PRK08622 galactose-6-phosphate 58.1 40 0.00086 29.7 6.7 73 223-310 1-75 (171)
69 PRK12613 galactose-6-phosphate 57.4 46 0.00099 28.3 6.8 69 224-310 2-72 (141)
70 cd03364 TOPRIM_DnaG_primases T 56.4 27 0.00058 26.0 4.8 34 56-89 44-77 (79)
71 TIGR01501 MthylAspMutase methy 56.3 1.1E+02 0.0023 25.8 8.9 51 60-123 9-60 (134)
72 PRK12615 galactose-6-phosphate 54.9 51 0.0011 29.0 6.8 72 224-310 2-75 (171)
73 PRK05571 ribose-5-phosphate is 52.6 54 0.0012 28.1 6.6 73 224-310 2-76 (148)
74 PLN02739 serine acetyltransfer 51.7 16 0.00035 35.9 3.5 34 28-65 320-353 (355)
75 cd02070 corrinoid_protein_B12- 51.4 1.8E+02 0.0038 25.9 10.5 47 55-107 82-132 (201)
76 PTZ00215 ribose 5-phosphate is 51.0 66 0.0014 27.7 6.8 73 223-310 3-79 (151)
77 TIGR01119 lacB galactose-6-pho 48.7 73 0.0016 28.0 6.9 72 224-310 2-75 (171)
78 TIGR01120 rpiB ribose 5-phosph 48.5 66 0.0014 27.5 6.4 71 225-310 2-74 (143)
79 TIGR00640 acid_CoA_mut_C methy 47.5 52 0.0011 27.5 5.6 41 61-107 11-52 (132)
80 PRK08673 3-deoxy-7-phosphohept 46.5 63 0.0014 31.6 6.8 58 221-281 261-325 (335)
81 cd02071 MM_CoA_mut_B12_BD meth 46.5 1.2E+02 0.0026 24.6 7.6 41 62-107 9-49 (122)
82 PRK13398 3-deoxy-7-phosphohept 45.8 59 0.0013 30.7 6.3 59 221-282 195-260 (266)
83 PRK11921 metallo-beta-lactamas 45.3 1.4E+02 0.003 29.7 9.2 48 40-89 234-284 (394)
84 PRK09542 manB phosphomannomuta 43.8 3.2E+02 0.007 27.6 11.8 83 55-155 164-259 (445)
85 PRK13396 3-deoxy-7-phosphohept 43.0 70 0.0015 31.5 6.5 44 221-265 270-318 (352)
86 PRK07200 aspartate/ornithine c 42.1 76 0.0016 31.8 6.7 48 53-102 185-237 (395)
87 PRK14047 putative methyltransf 41.6 1.5E+02 0.0032 28.6 8.1 79 195-303 81-159 (310)
88 TIGR01114 mtrH N5-methyltetrah 41.6 1.4E+02 0.003 28.8 8.0 79 195-303 81-159 (314)
89 PRK09590 celB cellobiose phosp 41.5 58 0.0013 26.1 4.8 32 56-87 2-33 (104)
90 PF01520 Amidase_3: N-acetylmu 41.3 1.8E+02 0.0039 24.7 8.4 82 69-160 27-114 (175)
91 PF02502 LacAB_rpiB: Ribose/Ga 40.8 52 0.0011 27.9 4.6 72 224-310 1-74 (140)
92 PF02007 MtrH: Tetrahydrometha 40.6 1.9E+02 0.0041 27.7 8.7 79 195-303 76-154 (296)
93 COG1004 Ugd Predicted UDP-gluc 40.3 41 0.00089 33.6 4.4 73 27-109 142-214 (414)
94 COG2185 Sbm Methylmalonyl-CoA 40.1 74 0.0016 27.2 5.4 41 55-101 12-55 (143)
95 PRK10834 vancomycin high tempe 37.7 1.5E+02 0.0032 27.6 7.4 99 16-127 48-151 (239)
96 TIGR00689 rpiB_lacA_lacB sugar 36.4 89 0.0019 26.7 5.4 59 237-310 15-73 (144)
97 cd05805 MPG1_transferase GTP-m 35.8 4.7E+02 0.01 26.3 11.6 82 55-154 168-260 (441)
98 PF13662 Toprim_4: Toprim doma 35.4 29 0.00063 26.0 2.1 35 55-89 46-80 (81)
99 PRK05452 anaerobic nitric oxid 35.4 2.8E+02 0.006 28.5 9.8 36 54-89 250-288 (479)
100 cd05564 PTS_IIB_chitobiose_lic 35.2 1.6E+02 0.0036 22.9 6.4 32 57-88 1-32 (96)
101 smart00115 CASc Caspase, inter 34.8 2.5E+02 0.0053 25.8 8.6 67 58-127 12-85 (241)
102 cd02067 B12-binding B12 bindin 34.6 2.3E+02 0.0051 22.5 7.6 26 61-89 8-33 (119)
103 PF00582 Usp: Universal stress 33.6 52 0.0011 25.8 3.5 44 56-102 3-46 (140)
104 PRK03692 putative UDP-N-acetyl 32.9 1.5E+02 0.0032 27.6 6.7 54 64-127 86-139 (243)
105 COG1979 Uncharacterized oxidor 32.6 1.1E+02 0.0025 29.9 5.9 63 222-301 29-94 (384)
106 COG0698 RpiB Ribose 5-phosphat 32.6 1.8E+02 0.0038 25.1 6.5 71 223-310 1-76 (151)
107 TIGR01361 DAHP_synth_Bsub phos 32.0 1.4E+02 0.0031 28.0 6.5 60 221-282 193-258 (260)
108 PF13362 Toprim_3: Toprim doma 31.9 1.4E+02 0.0031 22.9 5.6 36 54-89 40-77 (96)
109 PRK04523 N-acetylornithine car 31.9 1.2E+02 0.0026 29.7 6.1 47 54-100 168-217 (335)
110 PTZ00090 40S ribosomal protein 30.5 2.3E+02 0.0049 26.0 7.1 60 32-99 160-219 (233)
111 TIGR00853 pts-lac PTS system, 30.5 2.6E+02 0.0056 21.8 6.8 34 55-88 3-36 (95)
112 COG1732 OpuBC Periplasmic glyc 30.5 2E+02 0.0042 27.8 7.1 52 54-107 31-82 (300)
113 COG2121 Uncharacterized protei 30.5 1.9E+02 0.0041 26.3 6.6 60 223-305 68-128 (214)
114 PF04028 DUF374: Domain of unk 30.4 2.3E+02 0.0051 21.1 6.7 58 222-301 11-68 (74)
115 PF03698 UPF0180: Uncharacteri 30.3 2.5E+02 0.0054 21.5 6.4 16 74-89 12-27 (80)
116 COG0794 GutQ Predicted sugar p 30.2 1.5E+02 0.0033 26.8 6.0 32 56-89 40-71 (202)
117 cd05800 PGM_like2 This PGM-lik 30.2 3.5E+02 0.0075 27.4 9.5 84 55-156 173-268 (461)
118 PF03808 Glyco_tran_WecB: Glyc 28.6 3E+02 0.0065 23.8 7.6 71 64-160 29-99 (172)
119 PF04069 OpuAC: Substrate bind 27.8 1.5E+02 0.0034 27.2 6.0 48 57-107 2-49 (257)
120 cd00032 CASc Caspase, interleu 27.6 3.7E+02 0.008 24.6 8.5 77 57-141 12-95 (243)
121 PRK09271 flavodoxin; Provision 27.5 1.3E+02 0.0027 25.7 5.0 33 57-89 2-35 (160)
122 cd03084 phosphohexomutase The 27.4 5.7E+02 0.012 24.7 10.8 82 55-154 112-206 (355)
123 cd01989 STK_N The N-terminal d 27.3 76 0.0016 26.0 3.5 33 57-89 1-33 (146)
124 PF07881 Fucose_iso_N1: L-fuco 27.0 1.5E+02 0.0033 26.0 5.2 66 36-107 26-94 (171)
125 PRK14317 glmM phosphoglucosami 26.8 6.8E+02 0.015 25.4 11.4 82 55-154 188-279 (465)
126 cd05212 NAD_bind_m-THF_DH_Cycl 26.3 2.8E+02 0.0061 23.3 6.8 75 34-127 5-82 (140)
127 PRK14321 glmM phosphoglucosami 25.9 7E+02 0.015 25.2 11.2 80 58-153 166-256 (449)
128 PRK13397 3-deoxy-7-phosphohept 25.4 2E+02 0.0044 26.9 6.2 58 221-281 183-247 (250)
129 PRK01713 ornithine carbamoyltr 25.2 1.8E+02 0.0039 28.4 6.1 44 54-100 155-198 (334)
130 PRK10646 ADP-binding protein; 25.1 2.3E+02 0.005 24.4 6.1 43 33-79 10-52 (153)
131 TIGR02883 spore_cwlD N-acetylm 25.0 4.7E+02 0.01 22.9 9.4 27 132-158 99-125 (189)
132 cd05802 GlmM GlmM is a bacteri 24.9 7.1E+02 0.015 24.9 11.7 99 38-154 152-260 (434)
133 PF00258 Flavodoxin_1: Flavodo 24.8 1.4E+02 0.0029 24.5 4.6 24 66-89 8-31 (143)
134 PHA02031 putative DnaG-like pr 24.5 2.1E+02 0.0046 27.0 6.1 47 56-102 207-254 (266)
135 COG0683 LivK ABC-type branched 24.4 5.3E+02 0.012 25.0 9.4 48 40-88 134-181 (366)
136 cd05803 PGM_like4 This PGM-lik 24.2 7.4E+02 0.016 24.9 11.2 81 56-154 174-265 (445)
137 PRK14192 bifunctional 5,10-met 24.0 6.3E+02 0.014 24.0 9.5 65 58-125 37-101 (283)
138 PRK03525 crotonobetainyl-CoA:c 23.7 1.1E+02 0.0023 30.8 4.3 32 220-253 12-43 (405)
139 PRK03515 ornithine carbamoyltr 23.0 2.2E+02 0.0047 27.9 6.2 44 54-100 155-198 (336)
140 cd01029 TOPRIM_primases TOPRIM 22.8 2.1E+02 0.0046 20.7 4.9 34 56-89 44-77 (79)
141 cd03089 PMM_PGM The phosphoman 22.6 7.9E+02 0.017 24.6 11.1 83 55-155 163-258 (443)
142 PRK05568 flavodoxin; Provision 22.4 4.3E+02 0.0092 21.5 7.2 33 57-89 3-36 (142)
143 PRK05569 flavodoxin; Provision 22.4 4.1E+02 0.0088 21.6 7.1 33 57-89 3-36 (141)
144 PRK02102 ornithine carbamoyltr 22.3 2.3E+02 0.0051 27.6 6.3 44 54-100 154-197 (331)
145 PRK14318 glmM phosphoglucosami 22.1 8.2E+02 0.018 24.6 10.8 82 55-154 175-266 (448)
146 PRK04017 hypothetical protein; 22.1 1.6E+02 0.0034 24.8 4.3 34 54-87 64-97 (132)
147 PRK14719 bifunctional RNAse/5- 22.0 83 0.0018 31.1 3.1 33 55-87 67-99 (360)
148 COG5012 Predicted cobalamin bi 21.6 3E+02 0.0066 25.3 6.4 50 56-107 105-154 (227)
149 cd06533 Glyco_transf_WecG_TagA 21.4 2.4E+02 0.0051 24.4 5.6 56 63-127 26-81 (171)
150 TIGR00646 MG010 DNA primase-re 20.8 1.7E+02 0.0036 26.9 4.6 34 56-89 155-188 (218)
151 PRK14314 glmM phosphoglucosami 20.5 8.8E+02 0.019 24.4 12.4 84 55-156 177-270 (450)
152 PRK04284 ornithine carbamoyltr 20.5 2.4E+02 0.0052 27.5 5.9 44 54-100 154-197 (332)
153 KOG2451 Aldehyde dehydrogenase 20.2 97 0.0021 30.9 3.0 57 65-127 170-228 (503)
154 PRK09860 putative alcohol dehy 20.1 3.3E+02 0.0072 26.9 7.0 33 262-301 65-97 (383)
No 1
>PLN02307 phosphoglucomutase
Probab=100.00 E-value=1.3e-62 Score=504.61 Aligned_cols=360 Identities=81% Similarity=1.244 Sum_probs=278.1
Q ss_pred CCCcchhhhhhCCCCCCcCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHH
Q 046205 1 MVMFNVTRKETAPIDGQKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAA 80 (365)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~ 80 (365)
|-||.++-+......+++|||+||||+++.+++++++.++++|++.++..+...+++|+||||+|.+|++|+++++++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~FGT~GiRG~~~~~l~~~~~~~ig~a~~~~~~~~~~~~~~VvVG~D~R~~S~~fa~~~a~~L~ 86 (579)
T PLN02307 7 MASFKVSSVPTKPIEGQKPGTSGLRKKVKVFMQENYLANFVQALFNALPAEKVKGATLVLGGDGRYFNKEAIQIIIKIAA 86 (579)
T ss_pred CCceeeEEecCCCccCCCCcCccccccccccCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcchHHHHHHHHHHHH
Confidence 67899999999998889999999999999999999999999977555543211234699999999999999999999999
Q ss_pred HcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhh
Q 046205 81 ANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKT 160 (365)
Q Consensus 81 s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~ 160 (365)
++|++|++++++|++|||+++|+++++++ ++|++||||||||||+++++|||||+++++|.++.++.+++|++.+..
T Consensus 87 a~Gi~V~~~~~~G~~PTP~vsfav~~~~~---~~a~gGImITASHNP~~~~eyNGiK~~~~~G~~~~~~~~~~I~~~i~~ 163 (579)
T PLN02307 87 ANGVRRVWVGQNGLLSTPAVSAVIRERDG---SKANGGFILTASHNPGGPEEDFGIKYNYESGQPAPESITDKIYGNTLT 163 (579)
T ss_pred HCCCEEEEeCCCCccCchHHHHHHHHhcc---cCCCeEEEEecCCCCCCCCCCCEEEEECCCCCcCCcHHHHHHHHHHHh
Confidence 99999999965579999999999998710 148899999999999555599999999999999999999999766543
Q ss_pred hhhhhccCCCCCcccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHH
Q 046205 161 IKEYSIAEDLPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKR 240 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~ 240 (365)
++.+...+.++..++...+.... +..........|..+.|++++.+.++.+.|++...++++|||+||+||+++.++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~Yi~~l~~~i~~~~i~~~~~~~~lkVvvD~~hGag~~~~~~ 242 (579)
T PLN02307 164 IKEYKMAEDIPDVDLSAVGVTKF-GGPEDFDVEVIDPVEDYVKLMKSIFDFELIKKLLSRPDFTFCFDAMHGVTGAYAKR 242 (579)
T ss_pred hhhhhhcccccccchhhhccccc-ccccccceEEecCHHHHHHHHHHhhCHHHHhhhcccCCCeEEEeCCCCccHHHHHH
Confidence 21110000111111101100000 00001112334788999999999888776764211358999999999999999999
Q ss_pred HHH-HHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEeeCCEEeCCCc
Q 046205 241 IFV-EELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSD 319 (365)
Q Consensus 241 i~l-~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd~G~~l~~~~ 319 (365)
+ | ++|||+++..+|++|||.||++.|||+.+++.++...+...+..+++.++|+|+++||||||++++++|+++.+++
T Consensus 243 l-L~~~lG~~~~~~i~~~pDg~Fp~~~PnP~~~~l~~lv~~~~~~~~~~~~~~aDlgiA~DgDaDR~~vv~~g~~i~~d~ 321 (579)
T PLN02307 243 I-FVEELGAPESSLLNCVPKEDFGGGHPDPNLTYAKELVKRMGLGKTSYGDEPPEFGAASDGDGDRNMILGKRFFVTPSD 321 (579)
T ss_pred H-HHHhcCCCceeeecCccCCCCCCCCCCCCHHHHHHHHHHhhhccccccccCCCEEEEeCCCCCeEEEEecCcEEcCCh
Confidence 9 8 6999987524999999999999999988888888877621111122556999999999999999998899999999
Q ss_pred hHHHHHHHHHhcCcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 320 SVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 320 ~lall~~~ll~~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
.+++++.+++...+.+.++...||.|++||.+++++|+++|++++|
T Consensus 322 ~l~ll~~~~l~~~~~~~~g~~~VV~tv~sS~~l~~ia~~~G~~~~~ 367 (579)
T PLN02307 322 SVAIIAANAQEAIPYFSGGLKGVARSMPTSAALDVVAKKLNLPFFE 367 (579)
T ss_pred HHHHHHHHHHHhhhhhhcCCcEEEEeChhhHHHHHHHHHcCCeEEE
Confidence 9999998887642211122126999999999999999999999875
No 2
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=3.1e-62 Score=500.82 Aligned_cols=340 Identities=71% Similarity=1.094 Sum_probs=273.5
Q ss_pred hhhCCCCCCcCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEE
Q 046205 9 KETAPIDGQKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVW 88 (365)
Q Consensus 9 ~~~~~~~~~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~ 88 (365)
..+-.+...+|||+||||+++.++|++++.++++|++.++..+..++++|+||||+|.+|++|+++++++|+++|++|++
T Consensus 3 ~~~~~~~~~~Fgt~giRG~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~VvVG~D~R~~S~~~a~~~a~~L~~~G~~V~~ 82 (548)
T cd03085 3 VPTKPYEGQKPGTSGLRKKVKVFQQPNYLENFVQSIFNALPPEKLKGATLVVGGDGRYYNKEAIQIIIKIAAANGVGKVV 82 (548)
T ss_pred cCCcCCCCCCCCcccccEeeccccCHHHHHHHHHHHHHHHHhccCCCCeEEEEECCCcChHHHHHHHHHHHHHCCCeEEE
Confidence 34567888999999999999999999999999998866665321122369999999999999999999999999999999
Q ss_pred eCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccC
Q 046205 89 IGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAE 168 (365)
Q Consensus 89 ~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~ 168 (365)
+.++|.+|||+++|+++++ +|++||||||||||+++++||||||++++|.+++++.+++|++.+..++.. ..+
T Consensus 83 ~~~~G~~pTP~l~fav~~~------~a~gGImITASHNP~~~~eyNGiK~~~~~G~~i~~~~~~~I~~~i~~ie~~-~~~ 155 (548)
T cd03085 83 VGQNGLLSTPAVSAVIRKR------KATGGIILTASHNPGGPEGDFGIKYNTSNGGPAPESVTDKIYEITKKITEY-KIA 155 (548)
T ss_pred eCCCCccCchHHHHHHHhc------CCCeEEEEecCCCCCCCCcCCcEEEecCCCCcCCcHHHHHHHHHHHhcccc-ccc
Confidence 9545799999999999999 999999999999994323999999999999999999999998776543311 111
Q ss_pred CCCCcccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHH-HcC
Q 046205 169 DLPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVE-ELG 247 (365)
Q Consensus 169 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~-~lg 247 (365)
++++..+.++|.+.+.. ........+..+.|++++.+.++.+.|++....+++|||+||+||+++.+++++ |+ +||
T Consensus 156 ~~~~~~~~~~g~i~~~~--~~~~~~~~d~~~~Yi~~l~~~v~~~~i~~~~~~~~lkVVvD~~nGag~~~~~~l-L~~~LG 232 (548)
T cd03085 156 DDPDVDLSKIGVTKFGG--KPFTVEVIDSVEDYVELMKEIFDFDAIKKLLSRKGFKVRFDAMHGVTGPYAKKI-FVEELG 232 (548)
T ss_pred cccccChhhcCceeecc--cCCceEEecCHHHHHHHHHhhhCHHHHhhhcccCCCEEEEeCCcchhHHHHHHH-HHHhcC
Confidence 23333333444321110 000112347789999999998887767631112589999999999999999999 76 799
Q ss_pred CceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEeeCCEEeCCCchHHHHHHH
Q 046205 248 AQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAAN 327 (365)
Q Consensus 248 ~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd~G~~l~~~~~lall~~~ 327 (365)
|+++..+|++|||.||++.|+|+.+++.+|.+.|+ +.+||+|+++||||||++++|+|+++.+++.+++++.+
T Consensus 233 ~~~v~~i~~~pDg~Fp~~~P~P~~~~l~~L~~~V~-------~~~ADlGia~DgDaDRl~vvd~G~~i~~d~~lall~~~ 305 (548)
T cd03085 233 APESSVVNCTPLPDFGGGHPDPNLTYAKDLVELMK-------SGEPDFGAASDGDGDRNMILGKGFFVTPSDSVAVIAAN 305 (548)
T ss_pred CCceEEEeCeeCCCCCCCCCCCcHHHHHHHHHHHh-------ccCCCEEEEECCCCCceEEEecCEEecCCHHHHHHHHH
Confidence 98632499999999999999999889999999998 88999999999999999999889999999999999988
Q ss_pred HHhcCcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 328 AVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 328 ll~~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
+++......++...||.|++||.+++++|+++|++|++
T Consensus 306 ll~~~~~~~~~~~~VV~tv~sS~~le~ia~~~G~~v~~ 343 (548)
T cd03085 306 AKLIPYFYKGGLKGVARSMPTSGALDRVAKKLGIPLFE 343 (548)
T ss_pred HHHhhhhhhcCCcEEEEeCccHHHHHHHHHHcCCcEEE
Confidence 77421000122236999999999999999999999874
No 3
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=100.00 E-value=3.7e-62 Score=493.71 Aligned_cols=303 Identities=27% Similarity=0.397 Sum_probs=267.1
Q ss_pred CcCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCccc
Q 046205 17 QKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLS 96 (365)
Q Consensus 17 ~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~p 96 (365)
+.|||+||||++|+++||+++.++|+|||+++.+++..+++|+||||+|.+|++|++++++||+++|++|+++ .|.+|
T Consensus 1 ~~Fgt~GiRG~~~~~lt~~~~~~lg~a~~~~l~~~~~~~~~Vvvg~D~R~ss~~l~~a~~~gL~s~G~~V~~~--~g~~p 78 (461)
T cd05800 1 IKFGTDGWRGIIAEDFTFENVRRVAQAIADYLKEEGGGGRGVVVGYDTRFLSEEFARAVAEVLAANGIDVYLS--DRPVP 78 (461)
T ss_pred CCccCccccccccCCccHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCcCcHHHHHHHHHHHHHCCCEEEEc--CCCCC
Confidence 4799999999999999999999999999999974322346799999999999999999999999999999999 36999
Q ss_pred chHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCcccc
Q 046205 97 TPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDIS 176 (365)
Q Consensus 97 tP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ 176 (365)
||+++|+++++ +|++|||||||||| ++||||||++++|.+++++.+++||+.+++ + .++++...
T Consensus 79 TP~~~~a~~~~------~~~gGI~ITaSHnp---~~~ngiK~~~~~G~~i~~~~~~~ie~~~~~-~------~~~~~~~~ 142 (461)
T cd05800 79 TPAVSWAVKKL------GAAGGVMITASHNP---PEYNGVKVKPAFGGSALPEITAAIEARLAS-G------EPPGLEAR 142 (461)
T ss_pred chHHHHHHHHh------CCCeeEEEccCCCC---cccCeEEEeCCCCCcCChHHHHHHHHHHhh-c------cccccccc
Confidence 99999999999 99999999999999 899999999999999999999999998876 2 23332223
Q ss_pred cccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeecc
Q 046205 177 AVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNC 256 (365)
Q Consensus 177 ~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~ 256 (365)
++|. +...+..+.|++++.+.++.+.|++ +++|||+|++||+++.+++++ |++|||+++ .+|+
T Consensus 143 ~~g~-----------i~~~~~~~~Y~~~l~~~~~~~~i~~----~~~kivvd~~~G~~~~~~~~i-l~~lg~~v~-~~~~ 205 (461)
T cd05800 143 AEGL-----------IETIDPKPDYLEALRSLVDLEAIRE----AGLKVVVDPMYGAGAGYLEEL-LRGAGVDVE-EIRA 205 (461)
T ss_pred cCCc-----------eeecCCHHHHHHHHHHHhChhhhhc----CCceEEEeCCCCCcHHHHHHH-HHHcCCCEE-EeeC
Confidence 3443 2345788999999999988776654 699999999999999999999 799999997 4999
Q ss_pred ccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCccc
Q 046205 257 TPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYF 335 (365)
Q Consensus 257 ~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~~ 335 (365)
.|||+||++.|+|..+++.++.+.|+ +.+||+|+++||||||+.++| +|+++++++.++|++.+++++.
T Consensus 206 ~~dg~F~~~~p~p~~~~l~~l~~~v~-------~~~ad~Gia~D~DgDR~~vvd~~G~~l~~d~~~al~a~~ll~~~--- 275 (461)
T cd05800 206 ERDPLFGGIPPEPIEKNLGELAEAVK-------EGGADLGLATDGDADRIGAVDEKGNFLDPNQILALLLDYLLENK--- 275 (461)
T ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHH-------hcCCCEEEEECCCCCeEEEEeCCCceeCHHHHHHHHHHHHHHcC---
Confidence 99999999999999889999999998 889999999999999999999 5999998888889999998741
Q ss_pred ccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 336 SAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 336 ~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
.....||+|+.||++++++|+++|++|++
T Consensus 276 -~~~~~vv~~v~ss~~~~~~a~~~g~~v~~ 304 (461)
T cd05800 276 -GLRGPVVKTVSTTHLIDRIAEKHGLPVYE 304 (461)
T ss_pred -CCCCcEEEEcchHHHHHHHHHHhCCeeee
Confidence 11236999999999999999999998863
No 4
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=6.5e-62 Score=489.68 Aligned_cols=302 Identities=23% Similarity=0.340 Sum_probs=264.5
Q ss_pred cCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccc
Q 046205 18 KPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLST 97 (365)
Q Consensus 18 ~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~pt 97 (365)
+|||+||||++|+++||+++.++|+|+|+++.++. ++++|+||||+|.+|++|+++++++|+++|++|+++ |.+||
T Consensus 1 ~f~~~GiRG~~~~~lt~~~v~~l~~a~~~~l~~~~-~~~~Vvvg~D~R~~s~~l~~a~~~gL~~~G~~V~~~---g~~pT 76 (445)
T cd05803 1 IISISGIRGIVGEGLTPEVITRYVAAFATWQPERT-KGGKIVVGRDGRPSGPMLEKIVIGALLACGCDVIDL---GIAPT 76 (445)
T ss_pred CCCcCceeeecCCCCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEe---CCCCc
Confidence 59999999999999999999999999999997432 246799999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCccccc
Q 046205 98 PAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISA 177 (365)
Q Consensus 98 P~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~ 177 (365)
|+++|+++++ ++++|||||||||| ++||||||++++|.+++++.+++|++.+.+ + +++++.++.
T Consensus 77 P~~~~a~~~~------~~~~GI~ITaShnp---~~~nGiK~~~~~G~~~~~~~~~~i~~~~~~-~------~~~~~~~~~ 140 (445)
T cd05803 77 PTVQVLVRQS------QASGGIIITASHNP---PQWNGLKFIGPDGEFLTPDEGEEVLSCAEA-G------SAQKAGYDQ 140 (445)
T ss_pred hHHHHHHHHh------CCCeeEEEEecCCC---cccccEEEECCCCCcCCHHHHHHHHHHHhc-c------ccccccccc
Confidence 9999999999 99999999999999 899999999999999999999999988765 2 345444444
Q ss_pred ccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccc
Q 046205 178 VGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCT 257 (365)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~ 257 (365)
+|.+. ...+..+.|++++.+.++.+.++. +++++|||+||+||+++.+++++ |++|||+++ .+|+.
T Consensus 141 ~g~~~----------~~~~~~~~Y~~~l~~~~~~~~~~~--~~~~lkVvvd~~~G~~~~~~~~l-l~~lg~~v~-~~~~~ 206 (445)
T cd05803 141 LGEVT----------FSEDAIAEHIDKVLALVDVDVIKI--RERNFKVAVDSVNGAGGLLIPRL-LEKLGCEVI-VLNCE 206 (445)
T ss_pred Cccee----------ccCchHHHHHHHHHhhcccchhhh--ccCCCEEEEECCCCcHHHHHHHH-HHHcCCEEE-EeCCc
Confidence 55421 124788999999999887655431 12689999999999999999999 799999986 49999
Q ss_pred cCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCcccc
Q 046205 258 PKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYFS 336 (365)
Q Consensus 258 ~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~~~ 336 (365)
|||.|| +.|+|..+++.++.+.++ +.++|+|+++||||||++++| +|+++++++.++|+++++++.. .
T Consensus 207 ~d~~F~-~~p~p~~~~l~~l~~~v~-------~~~adlgi~~D~DgDR~~ivd~~G~~i~~d~~~al~a~~ll~~~---~ 275 (445)
T cd05803 207 PTGLFP-HTPEPLPENLTQLCAAVK-------ESGADVGFAVDPDADRLALVDEDGRPIGEEYTLALAVDYVLKYG---G 275 (445)
T ss_pred CCCCCC-CCCCCChHHHHHHHHHHH-------hcCCCEEEeeCCCCceEEEECCCCCCcChHHHHHHHHHHHHHhc---C
Confidence 999998 789998889999999998 889999999999999999999 5999998888889999998731 1
Q ss_pred cCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 337 AGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 337 ~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
++ ..||+|+.||.+++++|+++|++|++
T Consensus 276 ~~-~~vv~~v~ss~~i~~ia~~~g~~v~~ 303 (445)
T cd05803 276 RK-GPVVVNLSTSRALEDIARKHGVPVFR 303 (445)
T ss_pred CC-CCEEEeccchHHHHHHHHHcCCEEEE
Confidence 22 35999999999999999999999874
No 5
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.6e-61 Score=489.02 Aligned_cols=311 Identities=20% Similarity=0.191 Sum_probs=266.7
Q ss_pred hhhhhCCCCCCcCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEE
Q 046205 7 TRKETAPIDGQKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRR 86 (365)
Q Consensus 7 ~~~~~~~~~~~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V 86 (365)
..+-+..+++.+|||+||||++|+++||+++.++|+|+|+++.++..++++|+||||+|.+|++|++++++||+++|++|
T Consensus 7 ~~~~~~~~~~~~Fgt~GIRG~~~~~ltpe~a~~lg~a~g~~l~~~~~~~~~VvVG~D~R~ss~~l~~a~~~gL~s~Gv~V 86 (465)
T PRK14317 7 RNLGSGLPASPLFGTDGIRGKVGELLTAPLALQVGFWAGQVLRQTAPGEGPVLIGQDSRNSSDMLAMALAAGLTAAGREV 86 (465)
T ss_pred CCCCCCCCcCCeecCCCeeeEeCcccCHHHHHHHHHHHHHHHHhccCCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCeE
Confidence 34667789999999999999999999999999999999999964211345699999999999999999999999999999
Q ss_pred EEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhc
Q 046205 87 VWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSI 166 (365)
Q Consensus 87 ~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~ 166 (365)
+++ |.+|||+++|+++++ ++++|||||||||| ++||||||++++|.+++++.+++||+.+++ +
T Consensus 87 ~~~---g~~pTP~~~~av~~~------~~~gGI~ITaSHnP---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~-~---- 149 (465)
T PRK14317 87 WHL---GLCPTPAVAYLTRKS------EAIGGLMISASHNP---PEDNGIKFFGADGTKLSPELQAQIEAGLRG-E---- 149 (465)
T ss_pred EEe---cccCcHHHHHHHHhc------CCCEEEEEeCCCCC---cccCCEEEEcCCCCcCCHHHHHHHHHHHhc-c----
Confidence 999 999999999999999 99999999999999 899999999999999999999999988764 1
Q ss_pred cCCCCCcccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHc
Q 046205 167 AEDLPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEEL 246 (365)
Q Consensus 167 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~l 246 (365)
.+++...+.+|.. ....+..+.|++++.+.+|.+ |+. +++|||+||+||+++.+++++ |++|
T Consensus 150 --~~~~~~~~~~g~~----------~~~~~~~~~Y~~~l~~~id~~-i~~----~~~kVvvD~~nG~~~~~~~~l-l~~L 211 (465)
T PRK14317 150 --LSSSDNASNWGRH----------YHRPELLDDYRDALLESLPDR-VNL----QGVKIVLDLAWGAAVACAPEV-FKAL 211 (465)
T ss_pred --cccccchhcCCce----------EecCChHHHHHHHHHHhcCcc-ccc----CCCEEEEECCCchHHHHHHHH-HHHc
Confidence 2223223344432 112478899999999988854 443 689999999999999999999 7999
Q ss_pred CCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHH
Q 046205 247 GAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIA 325 (365)
Q Consensus 247 g~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~ 325 (365)
||+++ .+|+.|||.|+ +|+|..+++.++.+.|+ +.+||+|+++||||||++++| +|+++++++.++|++
T Consensus 212 G~~v~-~l~~~~dg~~~--~~~~~~~~l~~l~~~v~-------~~~adlGia~DgDgDR~~~vd~~G~~i~~d~l~~l~a 281 (465)
T PRK14317 212 GAEVI-CLHDQPDGDRI--NVNCGSTHLEPLQAAVL-------EHGADMGFAFDGDADRVLAVDGQGRVVDGDHILYLWG 281 (465)
T ss_pred CCeEE-EEecccCCCCC--CCCCchHhHHHHHHHHH-------hcCCCEEEEECCCCcEEEEECCCCCEEChhHHHHHHH
Confidence 99987 49999999987 44454578899999998 889999999999999999999 599999888888889
Q ss_pred HHHHhcCcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 326 ANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 326 ~~ll~~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
.++++... + ++ ..||.|+.||.+++++|+++|+++++
T Consensus 282 ~~ll~~~~-~-~~-~~VV~~v~ss~~~~~~~~~~g~~v~~ 318 (465)
T PRK14317 282 SHLQEQNQ-L-PD-NLLVATVMSNLGFERAWQQRGGQLER 318 (465)
T ss_pred HHHHHhcC-C-CC-CeEEEeeecchHHHHHHHHcCCeEEE
Confidence 88887421 1 22 46999999999999999999999863
No 6
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=100.00 E-value=2.9e-61 Score=484.79 Aligned_cols=292 Identities=24% Similarity=0.308 Sum_probs=259.3
Q ss_pred cCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccc
Q 046205 18 KPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLST 97 (365)
Q Consensus 18 ~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~pt 97 (365)
+||++||||++|+++||+++.++|+|+|+++.++ .+++|+||||+|.+|++|+++++++|+++|++|+++ |.+||
T Consensus 1 ~Fg~~giRG~~~~~lt~~~v~~l~~a~~~~l~~~--~~~~VvVg~D~R~~s~~~~~a~~~gL~s~G~~V~~~---g~~pT 75 (443)
T cd03089 1 IFRAYDIRGIAGEELTEEIAYAIGRAFGSWLLEK--GAKKVVVGRDGRLSSPELAAALIEGLLAAGCDVIDI---GLVPT 75 (443)
T ss_pred CCcccccceeeCCccCHHHHHHHHHHHHHHHHhc--CCCeEEEEECCCCCHHHHHHHHHHHHHHcCCcEEEe---CCcch
Confidence 6999999999999999999999999999999742 245799999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCccccc
Q 046205 98 PAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISA 177 (365)
Q Consensus 98 P~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~ 177 (365)
|+++|+++++ ++++|||||||||| ++||||||+++ |.++.++.+++|++.+.+ + ++++ ..+
T Consensus 76 P~~~~~v~~~------~a~gGI~ITASHNP---~~~nGiK~~~~-G~~~~~~~~~~Ie~~~~~-~------~~~~--~~~ 136 (443)
T cd03089 76 PVLYFATFHL------DADGGVMITASHNP---PEYNGFKIVIG-GGPLSGEDIQALRERAEK-G------DFAA--ATG 136 (443)
T ss_pred HHHHHHHhcc------CCCeEEEEecCCCC---cccCceEeccC-CCCCCHHHHHHHHHHHHh-c------cccc--cCC
Confidence 9999999999 99999999999999 89999999999 999999999999998765 1 2222 233
Q ss_pred ccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccc
Q 046205 178 VGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCT 257 (365)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~ 257 (365)
+|. +...+..+.|++++.+.++.+ .+++|||+||+||+++.+++++ |++|||+++ .+|+.
T Consensus 137 ~g~-----------~~~~d~~~~Y~~~l~~~i~~~-------~~~lkVvvd~~~G~~~~~~~~l-l~~lG~~v~-~i~~~ 196 (443)
T cd03089 137 RGS-----------VEKVDILPDYIDRLLSDIKLG-------KRPLKVVVDAGNGAAGPIAPQL-LEALGCEVI-PLFCE 196 (443)
T ss_pred CCc-----------EEECCCHHHHHHHHHHhcccc-------cCCCeEEEECCCCchHHHHHHH-HHHCCCEEE-EecCC
Confidence 443 233478999999999988742 1589999999999999999999 799999987 49999
Q ss_pred cCCCCCCCCCCCC-hhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCccc
Q 046205 258 PKEDFGGGHPDPN-LTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYF 335 (365)
Q Consensus 258 ~d~~f~~~~p~p~-~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~~ 335 (365)
|||.||++.|+|+ .+++.++.+.++ +.++|+|+++||||||++++| +|+++++++.++|++.|+++.
T Consensus 197 ~d~~F~~~~p~p~~~~~l~~l~~~v~-------~~~adlgia~D~DaDR~~ivd~~G~~l~~d~~~~lla~~ll~~---- 265 (443)
T cd03089 197 PDGTFPNHHPDPTDPENLEDLIAAVK-------ENGADLGIAFDGDGDRLGVVDEKGEIIWGDRLLALFARDILKR---- 265 (443)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHH-------HcCCCEEEEecCCcceeEEECCCCcEeCHHHHHHHHHHHHHHH----
Confidence 9999999999997 468899999998 889999999999999999999 599999888888999999874
Q ss_pred ccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 336 SAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 336 ~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
.++ ..||+|++||.+++++|+++|++|++
T Consensus 266 ~~~-~~vv~~v~ss~~~~~ia~~~g~~v~~ 294 (443)
T cd03089 266 NPG-ATIVYDVKCSRNLYDFIEEAGGKPIM 294 (443)
T ss_pred CCC-CeEEEecccchHHHHHHHHcCCeEEE
Confidence 122 46999999999999999999999863
No 7
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9e-61 Score=483.10 Aligned_cols=303 Identities=27% Similarity=0.384 Sum_probs=264.8
Q ss_pred CCCCCcCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCC
Q 046205 13 PIDGQKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQN 92 (365)
Q Consensus 13 ~~~~~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~ 92 (365)
+..+.+|||+||||+++.++||+++.++++|+|+++.. . ...+|+||||+|.+|++|++++++||+++|++|+++
T Consensus 4 ~~~~~~FGT~GiRG~~~~~lt~~~~~~~g~a~~~~l~~-~-~~~~VvVG~D~R~ss~~~~~a~~~gl~~~G~~v~~~--- 78 (464)
T COG1109 4 FMKKLLFGTDGIRGVAGEELTPEFALKLGRALGSVLRK-K-GAPKVVVGRDTRLSSEMLAAALAAGLTSAGIDVYDL--- 78 (464)
T ss_pred ccccceECCCccccccCCCcCHHHHHHHHHHHHHHHhh-c-CCCeEEEEecCCCCHHHHHHHHHHHHHHCCCeEEEe---
Confidence 45668999999999999999999999999999999984 1 226899999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCC
Q 046205 93 GLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPD 172 (365)
Q Consensus 93 g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~ 172 (365)
|.+|||+++|+++++ ++++|||||||||| ++|||||+++++|.+++++.+++|++.+.... .++.
T Consensus 79 g~~pTP~~~f~~~~~------~~~~gvmITASHNP---~~yNGiK~~~~~G~~i~~~~e~~Ie~~~~~~~------~~~~ 143 (464)
T COG1109 79 GLVPTPAVAFATRKL------GADAGVMITASHNP---PEYNGIKFFGSDGGKISDDIEEEIEAILAEEV------DLPR 143 (464)
T ss_pred CCCCCHHHHHHHHhc------CCCeEEEEecCCCC---chhCcEEEEcCCCCcCChHHHHHHHHHHhccc------cccc
Confidence 899999999999999 89999999999999 89999999999999999999999988876510 1233
Q ss_pred cccccccccccCCCCCCccceecc-chHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCcee
Q 046205 173 VDISAVGVTSFGGPEGQFDVEVFD-SASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQES 251 (365)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~~~~~~d-~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~ 251 (365)
..+...|.+ ...+ ..+.|++++.+.++.+ +. .+++|||+||+||+++.+++++ |++|||+++
T Consensus 144 ~~~~~~g~~-----------~~~~~~~~~Y~~~i~~~~~~~-~~----~~~lkVv~d~~nGaa~~~~~~l-l~~lG~~vv 206 (464)
T COG1109 144 PSWGELGRL-----------KRIPDALDRYIEFIKSLVDVD-LK----LRGLKVVVDCANGAAGLVAPRL-LKELGAEVV 206 (464)
T ss_pred cccccCCce-----------eEcchhHHHHHHHHHHhcccc-cc----cCCcEEEEECCCCchhHHHHHH-HHHcCCEEE
Confidence 233344432 2334 7999999999988754 22 3679999999999999999999 799999997
Q ss_pred eeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHh
Q 046205 252 SLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVE 330 (365)
Q Consensus 252 ~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~ 330 (365)
. +++.|||.||++.|+|.++.+.+|.+.++ +.++|+|+++||||||++++| +|++++++..++|++.|+++
T Consensus 207 ~-~~~~pDg~fp~~~p~p~~~~~~~l~~~v~-------~~~aDlgia~DgDaDR~~~vd~~G~~~~Gd~i~~lla~~l~~ 278 (464)
T COG1109 207 S-INCDPDGLFPNINPNPGETELLDLAKAVK-------EHGADLGIAFDGDADRLIVVDERGNFVDGDQILALLAKYLLE 278 (464)
T ss_pred E-ecCCCCCCCCCCCCCCCCccHHHHHHHHH-------hcCCCEEEEecCCCceEEEEcCCCCEeCccHHHHHHHHHHHh
Confidence 4 99999999999999999998889999998 668999999999999999999 59999988888888889887
Q ss_pred cCcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 331 SIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 331 ~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
+. +. ..||.|+.||..++.+++.+|+++++
T Consensus 279 ~~----~~-~~vV~tv~ss~~~~~i~~~~g~~~~~ 308 (464)
T COG1109 279 KG----KL-PTVVTTVMSSLALEKIAKKLGGKVVR 308 (464)
T ss_pred cC----CC-CeEEEecccchhHHHHHHHcCCeEEE
Confidence 42 11 27999999999999999999999863
No 8
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=5.4e-61 Score=483.26 Aligned_cols=292 Identities=24% Similarity=0.278 Sum_probs=260.8
Q ss_pred CCcCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcc
Q 046205 16 GQKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLL 95 (365)
Q Consensus 16 ~~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ 95 (365)
..+|||+||||++|+++||+++.++|+|+|+++. . ++|+||||+|.+|++|++++++||+++|++|+++ |.+
T Consensus 2 ~~~Fgt~GiRG~~~~~lt~e~~~~lg~a~~~~l~----~-~~VvVg~D~R~~s~~l~~a~~~gL~s~G~~V~~~---g~~ 73 (449)
T PRK14321 2 GKYFGTSGIREVVNEKLTPELALKVGLALGTYLG----G-GKVVVGKDTRTSSEMLKNALISGLLSTGVDVIDI---GLA 73 (449)
T ss_pred ccccccCCeeEEcCCCCCHHHHHHHHHHHHhhcc----C-CcEEEEeCCCCChHHHHHHHHHHHHHCCCeEEEe---CCc
Confidence 3789999999999999999999999999999986 2 3699999999999999999999999999999999 999
Q ss_pred cchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCccc
Q 046205 96 STPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDI 175 (365)
Q Consensus 96 ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~ 175 (365)
|||+++|+++.+ ++++|||||||||| ++||||||++++|.+++++.+++|++.+.+ + +++++.+
T Consensus 74 pTP~~~~av~~~------~~~gGI~ITaSHnP---~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~-~------~~~~~~~ 137 (449)
T PRK14321 74 PTPLTGFAIKLY------NADAGVTITASHNP---PEYNGIKVWQRNGMAYTPEMENELERIIES-G------NFKRVPW 137 (449)
T ss_pred CCcHHHHHHHhc------CCCeEEEEEeCCCC---HHHCcEEEECCCCCcCCHHHHHHHHHHHhc-c------ccccccc
Confidence 999999999999 99999999999999 899999999999999999999999988764 2 4555455
Q ss_pred ccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeec
Q 046205 176 SAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLN 255 (365)
Q Consensus 176 ~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~ 255 (365)
+++|.+ ...+..+.|+++|.+.++. .+++|||+||+||+++.+++.+ |++|||+++ .+|
T Consensus 138 ~~~g~~-----------~~~~~~~~Y~~~l~~~~~~--------~~~~kVvvD~~~G~~~~~~~~i-l~~lg~~v~-~i~ 196 (449)
T PRK14321 138 NEIGTL-----------RRADPKEEYIKAALEMIKL--------ENSYTVVVDSGNGAGSILSPYL-QRELGNKVI-SLN 196 (449)
T ss_pred ccCcee-----------eecccHHHHHHHHHHhcCc--------CCCCEEEEECCCchHHHHHHHH-HHHcCCEEE-EeC
Confidence 445542 2457899999999998874 1589999999999999999999 799999987 499
Q ss_pred cccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCcc
Q 046205 256 CTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPY 334 (365)
Q Consensus 256 ~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~ 334 (365)
+.|||.|+ ..|+|..+++.++.+.|+ +.+||+|+++||||||++++| +|+++++++.++|+++++++..
T Consensus 197 ~~~d~~f~-~~p~p~~~~l~~l~~~v~-------~~~adlGia~DgD~DR~~vvd~~G~~~~~d~~~~l~a~~ll~~~-- 266 (449)
T PRK14321 197 SHPSGFFV-RELEPNAKSLSMLAKTVK-------VLKADVGIAHDGDADRIGVVDDQGNFVEYEVMLSLIAGYMLRKF-- 266 (449)
T ss_pred ccCCCCCC-CCCCCchhhHHHHHHHHH-------HCCCCEEEEecCCCceEEEECCCCCEeChHHHHHHHHHHHHHhC--
Confidence 99999998 578888889999999998 889999999999999999999 5999998888888898888741
Q ss_pred cccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 335 FSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 335 ~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
++ ..||+|+.||.+++++|+++|++|++
T Consensus 267 --~~-~~vV~~v~ss~~i~~~a~~~g~~v~~ 294 (449)
T PRK14321 267 --GK-GKIVTTVDAGFALDDYIRPLGGEVIR 294 (449)
T ss_pred --CC-CcEEEeccccHHHHHHHHHcCCEEEE
Confidence 22 45999999999999999999999864
No 9
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=100.00 E-value=7.8e-61 Score=481.46 Aligned_cols=296 Identities=18% Similarity=0.208 Sum_probs=257.7
Q ss_pred cCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccc
Q 046205 18 KPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLST 97 (365)
Q Consensus 18 ~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~pt 97 (365)
+|||+||||++|+++||+++.++|+|+|+++. ++++|+||||+|.+|++|+++++++|+++|++|+++ |.+||
T Consensus 1 ~Fgt~giRG~~~~~lt~~~~~~lg~a~~~~l~----~~~~VvVG~D~R~ss~~~~~a~~~gL~s~G~~V~~~---g~~pT 73 (441)
T cd05805 1 LFGGRGVSGLINVDITPEFATRLGAAYGSTLP----PGSTVTVSRDASRASRMLKRALISGLLSTGVNVRDL---GALPL 73 (441)
T ss_pred CCCCCCceEEeCCCCCHHHHHHHHHHHhhcCC----CCCEEEEEcCCChhHHHHHHHHHHHHHhCCCeEEec---CCcCc
Confidence 59999999999999999999999999999886 345799999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCccccc
Q 046205 98 PAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISA 177 (365)
Q Consensus 98 P~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~ 177 (365)
|+++|+++++ ++++|||||||||| ++||||||++++|.+++++.+++|++.+++ + ++++...++
T Consensus 74 P~~~~av~~~------~~~gGi~ITaSHnp---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~-~------~~~~~~~~~ 137 (441)
T cd05805 74 PVARYAIRFL------GASGGIHVRTSPDD---PDKVEIEFFDSRGLNISRAMERKIENAFFR-E------DFRRAHVDE 137 (441)
T ss_pred hHHHHHHHhc------CCCeeEEEEeCCCC---ccceEEEEECCCCCcCCHHHHHHHHHHHhh-h------hhccccHhh
Confidence 9999999999 99999999999999 899999999999999999999999888764 2 233322233
Q ss_pred ccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccc
Q 046205 178 VGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCT 257 (365)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~ 257 (365)
+|.+. ...+..+.|++++.+.++.+.|+. +++|||+||+||+++.+++++ |++|||+++ .+++.
T Consensus 138 ~g~~~----------~~~~~~~~Y~~~l~~~i~~~~i~~----~~lkIvvd~~~G~~~~~~~~l-l~~lG~~v~-~i~~~ 201 (441)
T cd05805 138 IGDIT----------EPPDFVEYYIRGLLRALDTSGLKK----SGLKVVIDYAYGVAGIVLPGL-LSRLGCDVV-ILNAR 201 (441)
T ss_pred cCccc----------cchhHHHHHHHHHHHHhCHHHHhh----cCCeEEEECCCchHHHHHHHH-HHHcCCEEE-EEecc
Confidence 44321 124678999999999888776664 699999999999999999999 799999987 59999
Q ss_pred cCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCcccc
Q 046205 258 PKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYFS 336 (365)
Q Consensus 258 ~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~~~ 336 (365)
+||.|+ ..|+|..+++.++.+.|+ +.++|+|+++||||||++++| +|+++++++.++|+++++++.
T Consensus 202 ~d~~~~-~~~~~~~~~l~~l~~~v~-------~~~adlgia~DgDaDR~~vvd~~G~~~~gd~l~~l~a~~ll~~----- 268 (441)
T cd05805 202 LDEDAP-RTDTERQRSLDRLGRIVK-------ALGADFGVIIDPNGERLILVDEAGRVISDDLLTALVSLLVLKS----- 268 (441)
T ss_pred cCCccC-CCCccchhHHHHHHHHHH-------hCCCCEEEEEcCCCCEEEEECCCCCEEChhHHHHHHHHHHHHh-----
Confidence 999853 445565678999999998 889999999999999999999 589999887778888888863
Q ss_pred cCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 337 AGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 337 ~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
++...||.|+.||.+++++|+++|+++++
T Consensus 269 ~~~~~vv~~v~ss~~l~~~a~~~g~~~~~ 297 (441)
T cd05805 269 EPGGTVVVPVTAPSVIEQLAERYGGRVIR 297 (441)
T ss_pred CCCCeEEEEccchHHHHHHHHHcCCEEEE
Confidence 11246999999999999999999999864
No 10
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=9.9e-61 Score=481.37 Aligned_cols=301 Identities=22% Similarity=0.265 Sum_probs=258.7
Q ss_pred CCCcCCCCCcccccccc-cchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCC
Q 046205 15 DGQKPGTSGLRKKVKVF-TQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNG 93 (365)
Q Consensus 15 ~~~~Fgt~GiRG~~~~~-~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g 93 (365)
++.+|||+||||++|++ +||+++.++|+|||+++.... ..++|+||||+|.+|++|++++++||+++|++|+++ |
T Consensus 2 ~~~~Fg~~giRG~~~~~~lt~e~~~~lg~a~g~~l~~~~-~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g 77 (448)
T PRK14315 2 TRKYFGTDGIRGRANTFPMTAELALRVGQAAGLYFRRGD-HRHRVVIGKDTRLSGYMIENALVAGFTSVGMDVLLL---G 77 (448)
T ss_pred CCcEECCCCceecCCCCCCCHHHHHHHHHHHHHhHhhcC-CCceEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEe---C
Confidence 57899999999999999 999999999999999997421 223799999999999999999999999999999999 9
Q ss_pred cccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCC--
Q 046205 94 LLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLP-- 171 (365)
Q Consensus 94 ~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~-- 171 (365)
.+|||+++|+++++ ++++|||||||||| ++||||||++++|.+++++++++|++.+.. ++.
T Consensus 78 ~~pTP~~~~a~~~~------~~~gGi~ITaSHnP---~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~--------~~~~~ 140 (448)
T PRK14315 78 PIPTPAVAMLTRSM------RADLGVMISASHNP---FEDNGIKLFGPDGFKLSDEIELEIEALLDG--------DLDKR 140 (448)
T ss_pred CcccHHHHHHHHhc------CCCEEEEEEcCCCC---cccCCEEEECCCCCcCCHHHHHHHHHHHhc--------ccccc
Confidence 99999999999999 99999999999999 899999999999999999999999888742 232
Q ss_pred CcccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCcee
Q 046205 172 DVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQES 251 (365)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~ 251 (365)
++.++++|.+ ....+..+.|++++.+.+|.+ |++ +++|||+|++||+++.+++.+ |++|||+++
T Consensus 141 ~~~~~~~g~~----------~~~~~~~~~Y~~~l~~~id~~-i~~----~~lkVvvD~~~G~~~~~~~~l-l~~lG~~v~ 204 (448)
T PRK14315 141 LAAPADIGRA----------KRIDDAHGRYIEFAKRTLPRD-LRL----DGLRVVVDCANGAAYKVAPEA-LWELGAEVI 204 (448)
T ss_pred ccccccCcce----------EEecchHHHHHHHHHHhcccc-ccc----CCCEEEEECCCchHHHHHHHH-HHHcCCeEE
Confidence 3333444432 112367899999999988843 543 699999999999999999999 799999987
Q ss_pred eeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHh
Q 046205 252 SLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVE 330 (365)
Q Consensus 252 ~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~ 330 (365)
.+|+.||+.||...|.| +++.++.+.|+ +.+||+|+++||||||++++| +|+++++++.++|++.++++
T Consensus 205 -~i~~~~dg~~~~~~~~~--~~l~~l~~~v~-------~~~adlGia~DgDgDR~~ivd~~G~~i~~d~~~~l~a~~ll~ 274 (448)
T PRK14315 205 -TIGVEPNGFNINEECGS--THPEALAKKVR-------EVRADIGIALDGDADRVIIVDEKGHVVDGDQLMALIAESWAE 274 (448)
T ss_pred -EeccCCCCCCCCCCCCC--CCHHHHHHHHH-------HcCCCEEEEEcCCCceEEEEcCCCcEeCHHHHHHHHHHHHHH
Confidence 49999999997444433 57778999998 889999999999999999999 58999988888899989887
Q ss_pred cCcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 331 SIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 331 ~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
..+ + ++ ..||.|+.||.+++++|+++|+++++
T Consensus 275 ~~~-~-~~-~~vV~~v~ss~~i~~~a~~~g~~v~~ 306 (448)
T PRK14315 275 DGR-L-RG-GGIVATVMSNLGLERFLADRGLTLER 306 (448)
T ss_pred hCC-C-CC-CeEEEEecCChHHHHHHHHcCCeEEE
Confidence 411 1 22 46999999999999999999999863
No 11
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=8.6e-61 Score=481.22 Aligned_cols=300 Identities=20% Similarity=0.226 Sum_probs=254.9
Q ss_pred CcCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCccc
Q 046205 17 QKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLS 96 (365)
Q Consensus 17 ~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~p 96 (365)
.+|||+||||++++++||+++.++|+|||+++..+. ..++|+||||+|.+|++|+++++++|+++|++|+++ |.+|
T Consensus 2 ~~Fgt~GiRG~~~~~lt~~~~~~lg~a~g~~l~~~~-~~~~V~Vg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~p 77 (446)
T PRK14324 2 KLFGTDGVRGKAGEKLTAFLAMRLAMAAGIYFKKHS-ITNKILVGKDTRRSGYMIENALVSGLTSVGYNVIQI---GPMP 77 (446)
T ss_pred cccCCCCcceecCCCcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEe---cCcc
Confidence 479999999999999999999999999999997432 124699999999999999999999999999999999 9999
Q ss_pred chHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCC---CCc
Q 046205 97 TPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDL---PDV 173 (365)
Q Consensus 97 tP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~---~~~ 173 (365)
||+++|+++++ ++++|||||||||| ++||||||++++|.+++++.+++|++.+++ + ++ ++.
T Consensus 78 TP~~~~a~~~~------~~~gGI~ITaSHNP---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~-~------~~~~~~~~ 141 (446)
T PRK14324 78 TPAIAFLTEDM------RCDAGIMISASHNP---YYDNGIKFFDSYGNKLDEEEEKEIEEIFFD-E------ELIQSSQK 141 (446)
T ss_pred HHHHHHHHhhc------CCceEEEEEcCCCC---hhHCCEEEECCCCCCCCHHHHHHHHHHHhc-c------cccccccc
Confidence 99999999999 99999999999999 899999999999999999999999988764 2 22 121
Q ss_pred ccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeee
Q 046205 174 DISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSL 253 (365)
Q Consensus 174 ~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~ 253 (365)
....+|.+ ....+..+.|++++.+.++.+ ++ .+++|||+||+||+++.+++.+ |++|||+++ .
T Consensus 142 ~~~~~g~~----------~~~~~~~~~Y~~~l~~~i~~~-~~----~~~lkVvvD~~nGa~~~~~~~l-l~~lG~~v~-~ 204 (446)
T PRK14324 142 TGEEIGSA----------KRIDDVIGRYIVHIKNSFPKD-LT----LKGLRIVLDTANGAAYKVAPTV-FSELGADVI-V 204 (446)
T ss_pred chhhCeee----------EecccHHHHHHHHHHHhcCCc-cC----CCCCEEEEECCCchHHHHHHHH-HHHcCCeEE-E
Confidence 12234432 112368899999999988632 22 2689999999999999999999 799999987 4
Q ss_pred eccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcC
Q 046205 254 LNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESI 332 (365)
Q Consensus 254 ~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~ 332 (365)
+|+.|||.||...|+| +++.+|.+.|+ +.+||+|+++||||||++++| +|+++++++.++|++.++++..
T Consensus 205 i~~~~dg~~~~~~~~~--~~~e~l~~~v~-------~~~adlGia~DgDgDR~~vvd~~G~~l~~d~~~~l~a~~ll~~~ 275 (446)
T PRK14324 205 INDEPNGFNINENCGA--LHPENLAQEVK-------RYRADIGFAFDGDADRLVVVDEKGEIVHGDKLLGVLAVYLKEKG 275 (446)
T ss_pred ECCCCCCCCCCCCCCC--CCHHHHHHHHH-------hCCCCEEEEECCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhC
Confidence 9999999998554444 45567888887 889999999999999999999 5999998888889999988742
Q ss_pred cccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 333 PYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 333 ~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
+ + ++ ..||.|+.||.+++++|+++|++|++
T Consensus 276 ~-~-~~-~~VV~~v~ss~~l~~ia~~~g~~v~~ 305 (446)
T PRK14324 276 A-L-KS-QAIVATVMSNLALEEYLKKHGIELKR 305 (446)
T ss_pred C-C-CC-CeEEEEecCChHHHHHHHHcCCeEEE
Confidence 1 1 22 46999999999999999999999863
No 12
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=1.4e-60 Score=479.53 Aligned_cols=291 Identities=24% Similarity=0.308 Sum_probs=260.5
Q ss_pred cCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccc
Q 046205 18 KPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLST 97 (365)
Q Consensus 18 ~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~pt 97 (365)
+|||+||||++|+++||+++.++|+|+|+++. +++|+||||+|.+|++|+++++++|+++|++|+++ |.+||
T Consensus 1 ~Fgt~giRG~~~~~lt~~~~~~l~~a~~~~l~-----~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~V~~~---g~~~t 72 (439)
T cd03087 1 LFGTSGIRGVVGEELTPELALKVGKALGTYLG-----GGTVVVGRDTRTSGPMLKNAVIAGLLSAGCDVIDI---GIVPT 72 (439)
T ss_pred CcCcCceeeECCCCcCHHHHHHHHHHHHhhcc-----CCeEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEc---CccCh
Confidence 59999999999999999999999999999885 35799999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCccccc
Q 046205 98 PAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISA 177 (365)
Q Consensus 98 P~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~ 177 (365)
|+++|+++++ + ++|||||||||| ++||||||++++|.+++++.+++||+.+.+ + +++++.+++
T Consensus 73 P~~~~~v~~~------~-~gGi~ItaShnp---~~~ngiK~~~~~G~~i~~~~~~~Ie~~~~~-~------~~~~~~~~~ 135 (439)
T cd03087 73 PALQYAVRKL------G-DAGVMITASHNP---PEYNGIKLVNPDGTEFSREQEEEIEEIIFS-E------RFRRVAWDE 135 (439)
T ss_pred HHHHHHHHhc------C-CceEEEEeCCCC---HHHCcEEEECCCCCcCCHHHHHHHHHHHhc-C------Ccccccccc
Confidence 9999999999 8 999999999999 899999999999999999999999998865 2 344444444
Q ss_pred ccccccCCCCCCccceecc-chHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeecc
Q 046205 178 VGVTSFGGPEGQFDVEVFD-SASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNC 256 (365)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~d-~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~ 256 (365)
+|.+ ...+ ..+.|++++.+.++.+. .+++||++|++||+++.+++++ |++|||+++. +|+
T Consensus 136 ~g~~-----------~~~~~~~~~Y~~~l~~~~~~~~------~~~lkIvid~~~G~~~~~~~~~-l~~lg~~v~~-~~~ 196 (439)
T cd03087 136 VGSV-----------RREDSAIDEYIEAILDKVDIDG------GKGLKVVVDCGNGAGSLTTPYL-LRELGCKVIT-LNA 196 (439)
T ss_pred CeeE-----------EecCccHHHHHHHHHHhcCccc------CCCCEEEEECCCCchHHHHHHH-HHHcCCEEEE-ECC
Confidence 4532 2334 89999999999887532 2689999999999999999999 7999999874 899
Q ss_pred ccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCccc
Q 046205 257 TPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYF 335 (365)
Q Consensus 257 ~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~~ 335 (365)
.|||+||++.|+|..+++.++.+.++ +.++|+|+++||||||++++| +|+++++++.++|++.++++.
T Consensus 197 ~~d~~f~~~~p~p~~~~l~~l~~~v~-------~~~adlgia~D~DgDR~~~vd~~G~~l~~d~~~~l~a~~ll~~---- 265 (439)
T cd03087 197 NPDGFFPGRPPEPTPENLSELMELVR-------ATGADLGIAHDGDADRAVFVDEKGRFIDGDKLLALLAKYLLEE---- 265 (439)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHH-------hcCCCEEEEEcCCCceEEEECCCCCEechHHHHHHHHHHHHhc----
Confidence 99999999999999889999999998 889999999999999999999 589999888888999999873
Q ss_pred ccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 336 SAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 336 ~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
+ ...||.|+.||++++++|+++|+++++
T Consensus 266 -~-~~~vv~~v~ss~~l~~~a~~~g~~~~~ 293 (439)
T cd03087 266 -G-GGKVVTPVDASMLVEDVVEEAGGEVIR 293 (439)
T ss_pred -C-CCcEEEeccchHHHHHHHHHcCCEEEE
Confidence 2 246999999999999999999998863
No 13
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.9e-60 Score=477.30 Aligned_cols=298 Identities=24% Similarity=0.324 Sum_probs=257.5
Q ss_pred CCcCCCCCccccccc-ccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCc
Q 046205 16 GQKPGTSGLRKKVKV-FTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGL 94 (365)
Q Consensus 16 ~~~Fgt~GiRG~~~~-~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~ 94 (365)
+.+|||+||||++|+ ++||+++.++|+|+|+++..+ .+++|+||||+|.+|++|++++++||+++|++|+++ |.
T Consensus 1 ~~~Fgt~GiRG~~~~~~ltpe~~~~lg~a~a~~l~~~--~~~~VvVg~D~R~ss~~l~~a~~~gL~s~Gv~V~~~---g~ 75 (443)
T PRK10887 1 RKYFGTDGIRGKVGQAPITPDFVLKLGWAAGKVLARQ--GRPKVLIGKDTRISGYMLESALEAGLAAAGVDVLLT---GP 75 (443)
T ss_pred CCccCCCccceecCCCCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEE---CC
Confidence 578999999999998 699999999999999999742 235699999999999999999999999999999999 99
Q ss_pred ccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCcc
Q 046205 95 LSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVD 174 (365)
Q Consensus 95 ~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~ 174 (365)
+|||+++|+++.+ ++++|||||||||| ++||||||++++|.+++++.+++|++.+++ +++++.
T Consensus 76 ~pTP~~~~a~~~~------~~~gGI~ITaShnp---~~~ngiK~~~~~G~~i~~~~~~~ie~~~~~--------~~~~~~ 138 (443)
T PRK10887 76 MPTPAVAYLTRTL------RAEAGIVISASHNP---YYDNGIKFFSADGTKLPDEVELAIEAELDK--------PLTCVE 138 (443)
T ss_pred cChHHHHHHHHHc------CCCEEEEEecCCCC---cccCeEEEECCCCCCCCHHHHHHHHHHHhC--------cCCccc
Confidence 9999999999999 99999999999999 899999999999999999999999888642 344433
Q ss_pred cccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeee
Q 046205 175 ISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLL 254 (365)
Q Consensus 175 ~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~ 254 (365)
...+|.+ ....+..+.|++++.+.+|. .|+ ++++|||+||+||+++.+++.+ |++|||+++ .+
T Consensus 139 ~~~~g~~----------~~~~~~~~~Y~~~l~~~id~-~i~----~~~~kVvvD~~~G~~~~~~~~l-l~~lG~~v~-~~ 201 (443)
T PRK10887 139 SAELGKA----------SRINDAAGRYIEFCKSTFPN-ELS----LRGLKIVVDCANGATYHIAPNV-FRELGAEVI-AI 201 (443)
T ss_pred cccCceE----------EEcCChHHHHHHHHHHhcCc-ccc----cCCCEEEEECCCchHHHHHHHH-HHHhCCeEE-EE
Confidence 3444532 11236789999999998874 333 3699999999999999999999 799999987 49
Q ss_pred ccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCc
Q 046205 255 NCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIP 333 (365)
Q Consensus 255 ~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~ 333 (365)
|++|||.|+...|. .+++.++.+.|+ +.+||+|+++||||||++++| +|+++++++.++|++.++++..
T Consensus 202 n~~~dg~~~~~~~~--~~~l~~l~~~v~-------~~~adlGia~D~DgDRl~~vd~~G~~i~~d~l~~l~~~~ll~~~- 271 (443)
T PRK10887 202 GCEPNGLNINDECG--ATDPEALQAAVL-------AEKADLGIAFDGDGDRVIMVDHLGNLVDGDQLLYIIARDRLRRG- 271 (443)
T ss_pred eccCCCCCCCCCCC--CCCHHHHHHHHH-------hcCCCeeeEECCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhC-
Confidence 99999999744444 368888999998 889999999999999999999 5999998888889999988742
Q ss_pred ccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 334 YFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 334 ~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
+....||.|+.||.+++++|+++|++|++
T Consensus 272 ---~~~~~vv~~v~ss~~~~~~a~~~g~~v~~ 300 (443)
T PRK10887 272 ---QLRGGVVGTLMSNMGLELALKQLGIPFVR 300 (443)
T ss_pred ---CCCCcEEEEeccchHHHHHHHHcCCcEEE
Confidence 10135999999999999999999999863
No 14
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=3.1e-60 Score=476.22 Aligned_cols=298 Identities=23% Similarity=0.299 Sum_probs=257.8
Q ss_pred cCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccc
Q 046205 18 KPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLST 97 (365)
Q Consensus 18 ~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~pt 97 (365)
+|||+||||++++++||+++.++|+|||+++..+. .+++|+||||+|.+|++|++++++||+++|++|+++ |.+||
T Consensus 1 ~Fg~~giRG~~~~~lt~e~~~~lg~a~~~~l~~~~-~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~pT 76 (434)
T cd05802 1 LFGTDGIRGVANEPLTPELALKLGRAAGKVLGKGG-GRPKVLIGKDTRISGYMLESALAAGLTSAGVDVLLL---GVIPT 76 (434)
T ss_pred CCCCCccceECCCCCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEECCCCCHHHHHHHHHHHHHHCCCcEEEE---cccch
Confidence 69999999999999999999999999999997422 246799999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCccccc
Q 046205 98 PAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISA 177 (365)
Q Consensus 98 P~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~ 177 (365)
|+++|+++++ ++++|||||||||| ++||||||++++|.+++++.+++|++.+++ + .++++.++.
T Consensus 77 P~~~~av~~~------~~~gGI~ITaSHnp---~~~nGiK~~~~~G~~i~~~~~~~i~~~~~~-~------~~~~~~~~~ 140 (434)
T cd05802 77 PAVAYLTRKL------RADAGVVISASHNP---FEDNGIKFFSSDGYKLPDEVEEEIEALIDK-E------LELPPTGEK 140 (434)
T ss_pred HHHHHHHHHh------CCCeEEEEEecCCc---hhhCCEEEECCCCCcCCHHHHHHHHHHHhC-c------ccccccccc
Confidence 9999999999 99999999999999 899999999999999999999999988765 2 333334444
Q ss_pred ccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccc
Q 046205 178 VGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCT 257 (365)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~ 257 (365)
+|.+ ....+..+.|+++|.+.++.+. .+++|||+||+||+++.+++++ |++|||+++ .+|++
T Consensus 141 ~g~~----------~~~~~~~~~Y~~~l~~~~~~~~------~~~lkVvvD~~nG~~~~~~~~l-l~~lg~~v~-~in~~ 202 (434)
T cd05802 141 IGRV----------YRIDDARGRYIEFLKSTFPKDL------LSGLKIVLDCANGAAYKVAPEV-FRELGAEVI-VINNA 202 (434)
T ss_pred CeeE----------EEccchHHHHHHHHHHhcCccc------cCCCEEEEECCCchHHHHHHHH-HHHcCCeEE-EecCC
Confidence 5542 1124688999999999888532 2589999999999999999999 799999997 59999
Q ss_pred cCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCcccc
Q 046205 258 PKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYFS 336 (365)
Q Consensus 258 ~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~~~ 336 (365)
||+.||...|. .+++.++.+.|+ +.++|+|+++||||||++++| +|+++++++.++|++.++++..+ +
T Consensus 203 ~dg~~~~~~~~--~~~~~~l~~~v~-------~~~adlGia~DgDgDR~~~vd~~G~~i~~d~~~~l~a~~l~~~~~-~- 271 (434)
T cd05802 203 PDGLNINVNCG--STHPESLQKAVL-------ENGADLGIAFDGDADRVIAVDEKGNIVDGDQILAICARDLKERGR-L- 271 (434)
T ss_pred CCCCCCCCCCC--ccCHHHHHHHHH-------hcCCCEEEEEcCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCC-C-
Confidence 99999754333 457788999998 889999999999999999999 59999988888899999887421 1
Q ss_pred cCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 337 AGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 337 ~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
++ ..||.|+.||.+++++|+++|+++++
T Consensus 272 ~~-~~vv~~v~ss~~~~~~~~~~g~~v~~ 299 (434)
T cd05802 272 KG-NTVVGTVMSNLGLEKALKELGIKLVR 299 (434)
T ss_pred CC-CeEEEecCCcHHHHHHHHHcCCeEEE
Confidence 22 46999999999999999999999863
No 15
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=5.6e-60 Score=476.16 Aligned_cols=302 Identities=22% Similarity=0.292 Sum_probs=258.6
Q ss_pred CCCcCCCCCcccccccc-cchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCC
Q 046205 15 DGQKPGTSGLRKKVKVF-TQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNG 93 (365)
Q Consensus 15 ~~~~Fgt~GiRG~~~~~-~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g 93 (365)
.+.+|||+||||++|++ +||+++.++|+|||+++..+. ..++|+||||+|.+|++|+++++++|+++|++|+++ |
T Consensus 2 ~~~~Fgt~GiRG~~~~~~lt~e~~~~l~~a~~~~l~~~~-~~~~VvVg~D~R~~s~~l~~a~~~gL~s~Gv~V~~~---g 77 (450)
T PRK14314 2 MKKLFGTDGVRGRANVYPMTAEMALQLGRAAAYVFRNGS-GRHRVVIGKDTRLSGYMFENALIAGLCSMGVDVLLV---G 77 (450)
T ss_pred CCceeCCCCcceecCCCCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEeCCCcChHHHHHHHHHHHHHCCCeEEEe---c
Confidence 57899999999999986 999999999999999997432 224799999999999999999999999999999999 9
Q ss_pred cccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCC--
Q 046205 94 LLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLP-- 171 (365)
Q Consensus 94 ~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~-- 171 (365)
.+|||+++|+++++ ++++|||||||||| ++||||||++++|.+++++.+++|++.+.+ + +++
T Consensus 78 ~~ptP~~~~a~~~~------~~~gGI~iTaShnp---~~~ngiK~~~~~G~~~~~~~~~~Ie~~~~~-~------~~~~~ 141 (450)
T PRK14314 78 PLPTPGIAFITRSM------RADAGVVISASHNP---YQDNGIKFFSSDGFKLPDEVELRIEAMVLS-K------DFDWL 141 (450)
T ss_pred ccCCHHHHHHHHhc------CCCEEEEEEeCCCC---cccccEEEECCCCCCCCHHHHHHHHHHHhc-C------Ccccc
Confidence 99999999999999 99999999999999 899999999999999999999999998765 2 333
Q ss_pred CcccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCcee
Q 046205 172 DVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQES 251 (365)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~ 251 (365)
+....++|++ ....+..+.|+++|.+.+| ..++ .+++|||+||+||+++.+++++ |++|||+++
T Consensus 142 ~~~~~~~g~~----------~~~~~~~~~Y~~~l~~~id-~~i~----~~~~kVvvD~~~Ga~~~~~~~i-l~~lg~~v~ 205 (450)
T PRK14314 142 LPDAHAVGKA----------KRIDDAPGRYIVFLKATFP-KGLT----LKGLKIVLDCANGAAYKVAPAV-FEELGAEVI 205 (450)
T ss_pred ccchhcCceE----------EEeCchHHHHHHHHHHhhc-cccC----CCCCEEEEECCCchHHHHHHHH-HHHcCCeEE
Confidence 2223344432 1234678999999999887 3333 2689999999999999999999 799999987
Q ss_pred eeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHh
Q 046205 252 SLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVE 330 (365)
Q Consensus 252 ~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~ 330 (365)
.+|++|||.||...|.| +++.++.+.|+ +.+||+|+++||||||++++| +|+++++++.++|++.++++
T Consensus 206 -~~~~~~dg~~~~~~~~~--~~~~~l~~~v~-------~~~adlGia~DgDgDR~~~vd~~G~~i~~d~~~al~~~~ll~ 275 (450)
T PRK14314 206 -CIGVEPNGLNINAGCGS--LHPEVIAKAVI-------EHGADLGIALDGDADRLIVVDEKGHIVDGDQIMAICATDLKK 275 (450)
T ss_pred -EeccCCCCCCCCCCCCC--CCHHHHHHHHH-------hcCCCeEEEEcCCCceEEEECCCCcCcCHHHHHHHHHHHHHH
Confidence 49999999998555444 45667888888 789999999999999999999 59999988888899999987
Q ss_pred cCcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 331 SIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 331 ~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
... .++ ..||+|+.||.+++++|+++|++|++
T Consensus 276 ~~~--~~~-~~vv~~v~ss~~~~~ia~~~g~~v~~ 307 (450)
T PRK14314 276 RGA--LPK-NTLVATVMSNMGLEVAMKELGGQVLR 307 (450)
T ss_pred hcC--CCC-CEEEEeccCChHHHHHHHHcCCEEEE
Confidence 411 122 36999999999999999999999864
No 16
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.3e-59 Score=471.64 Aligned_cols=301 Identities=19% Similarity=0.248 Sum_probs=255.5
Q ss_pred CcCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCccc
Q 046205 17 QKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLS 96 (365)
Q Consensus 17 ~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~p 96 (365)
.+|||+||||++|+++||+++.++|+|+|+++.++...+++|+||||+|.+|++|++++++||+++|++|+++ |.+|
T Consensus 2 ~~Fg~~giRG~~~~~ltpe~~~~ig~a~~~~l~~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~p 78 (448)
T PRK14316 2 KYFGTDGVRGVANKELTPELAFKLGRAGGYVLTKHETERPKVLVGRDTRISGDMLESALIAGLLSVGAEVMRL---GVIP 78 (448)
T ss_pred ceeccCCcceEcCCCCCHHHHHHHHHHHHHHHHhccCCCCeEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEe---cccc
Confidence 5899999999999999999999999999999874211245699999999999999999999999999999999 9999
Q ss_pred chHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCcccc
Q 046205 97 TPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDIS 176 (365)
Q Consensus 97 tP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ 176 (365)
||+++|+++++ ++++|||||||||| ++||||||++++|.+++++.+++|++.+.+.. +++++....
T Consensus 79 TP~~~~av~~~------~~~gGi~ITaSHnp---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~-----~~~~~~~~~ 144 (448)
T PRK14316 79 TPGVAYLTRAL------GADAGVMISASHNP---VEDNGIKFFGSDGFKLSDEQEDEIEALLDAEE-----DTLPRPSGE 144 (448)
T ss_pred hHHHHHHHHHh------cCcEEEEEEecCCC---hhhCcEEEEcCCCCcCCHHHHHHHHHHHhccc-----cccccCccc
Confidence 99999999999 99999999999999 89999999999999999999999998876411 134443333
Q ss_pred cccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeecc
Q 046205 177 AVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNC 256 (365)
Q Consensus 177 ~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~ 256 (365)
.+|.+ ....+..+.|++++.+.++.+ .+++|||+||+||+++.+++++ |++|||+++ .+|+
T Consensus 145 ~~g~~----------~~~~~~~~~Y~~~l~~~i~~~-------~~~lkvvvD~~nG~~~~~~~~l-l~~lg~~v~-~in~ 205 (448)
T PRK14316 145 GLGTV----------SDYPEGLRKYLQFLKSTIDED-------LSGLKVALDCANGATSSLAPRL-FADLGADVT-VIGT 205 (448)
T ss_pred cceeE----------EEeCcHHHHHHHHHHHhcCcc-------cCCCEEEEECCCchhhHHHHHH-HHHcCCeEE-EEcc
Confidence 34432 123367888999999988742 2589999999999999999999 799999987 4999
Q ss_pred ccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCccc
Q 046205 257 TPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYF 335 (365)
Q Consensus 257 ~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~~ 335 (365)
+||+.||+..|.| +++.++.+.|+ +.+||+|+++||||||++++| +|+++++++.++|++.++++...
T Consensus 206 ~~dg~~~~~~~~~--~~~~~l~~~v~-------~~~adlGia~DgDaDR~~~vd~~G~~i~~d~~~~l~a~~ll~~~~-- 274 (448)
T PRK14316 206 SPDGLNINDGVGS--THPEALQELVV-------EKGADLGLAFDGDADRLIAVDENGNIVDGDKIMFICGKYLKEKGR-- 274 (448)
T ss_pred CCCCCCCCCCCCC--CCHHHHHHHHh-------hcCCCEEEEEcCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCC--
Confidence 9999998554444 45667888888 889999999999999999999 59999988888888888887421
Q ss_pred ccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 336 SAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 336 ~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
.++ ..||.|+.||.+++++|+++|+++++
T Consensus 275 ~~~-~~vv~~v~ss~~~~~~~~~~g~~v~~ 303 (448)
T PRK14316 275 LKK-NTIVTTVMSNLGFYKALEEEGINSVK 303 (448)
T ss_pred CCC-CeEEEeccCchHHHHHHHHcCCeEEE
Confidence 022 36999999999999999999999863
No 17
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.3e-59 Score=470.31 Aligned_cols=300 Identities=22% Similarity=0.252 Sum_probs=255.7
Q ss_pred CCcCCCCCcccccccccchHHHHHHHHHHHHHhhhccc---CCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCC
Q 046205 16 GQKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKV---RGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQN 92 (365)
Q Consensus 16 ~~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~---~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~ 92 (365)
..+|||+||||++|+++||+++.++|+|||+++..++. .++.|+||||+|.+|++|++++++||+++|++|+++
T Consensus 2 ~~~Fg~~giRG~~~~~ltpe~~~~lg~a~~~~l~~~~~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~--- 78 (448)
T PRK14318 2 GRLFGTDGVRGLANRDLTAELALALGAAAARVLGHAGRPGGRRPVAVVGRDPRASGEFLEAAVSAGLASAGVDVLRV--- 78 (448)
T ss_pred CcccCCCCcceecCCccCHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCcCHHHHHHHHHHHHHHCCCEEEEe---
Confidence 37899999999999999999999999999999974321 145699999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCC
Q 046205 93 GLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPD 172 (365)
Q Consensus 93 g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~ 172 (365)
|.+|||+++|+++++ ++++|||||||||| ++||||||++++|.+++++.+++|++.+++ + ++.+
T Consensus 79 g~~pTP~~~~av~~~------~~~gGI~ITaSHnp---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~-~------~~~~ 142 (448)
T PRK14318 79 GVLPTPAVAYLTAAL------DADFGVMISASHNP---MPDNGIKFFAAGGHKLPDDVEDRIEAVLGQ-L------PWLR 142 (448)
T ss_pred cccCchHHHHHHHhc------CCCEEEEEEcCCCC---cccCCEEEEcCCCCcCCHHHHHHHHHHHhc-c------Cccc
Confidence 999999999999999 99999999999999 899999999999999999999999988765 2 3333
Q ss_pred cccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceee
Q 046205 173 VDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESS 252 (365)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~ 252 (365)
...+.+|++ ....+..+.|++++.+.++. + ++++|||+||+||+++.+++++ |++|||+++
T Consensus 143 ~~~~~~g~~----------~~~~~~~~~Y~~~l~~~i~~---~----~~~~kVvvD~~nG~~~~~~~~l-l~~lG~~v~- 203 (448)
T PRK14318 143 PTGAGVGRV----------IDAPDATDRYLRHLLGALPT---R----LDGLKVVVDCAHGAASGVAPEA-YRAAGADVI- 203 (448)
T ss_pred cccccCceE----------EECCcHHHHHHHHHHHHhcc---c----cCCCEEEEECCCchHHHHHHHH-HHHcCCEEE-
Confidence 333344542 11346789999999988762 2 2689999999999999999999 799999987
Q ss_pred eeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhc
Q 046205 253 LLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVES 331 (365)
Q Consensus 253 ~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~ 331 (365)
.+|+.||+.||.. +|..+++.++.+.|+ +.++|+|+++||||||++++| +|+++++++.++|++.++++.
T Consensus 204 ~in~~~dg~~~~~--~~~~~~l~~l~~~v~-------~~~adlGia~DgD~DR~~~vd~~G~~l~~d~~~~l~a~~l~~~ 274 (448)
T PRK14318 204 AINADPDGLNIND--GCGSTHLEQLQAAVV-------AHGADLGLAHDGDADRCLAVDANGNVVDGDQIMAILALAMKEA 274 (448)
T ss_pred EeccCCCCCCCCC--CCCCCCHHHHHHHHH-------hcCCCEEEEecCCCceEEEECCCCcEeCHHHHHHHHHHHHHHh
Confidence 5999999999743 333468888999998 889999999999999999999 599999888888888777753
Q ss_pred CcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 332 IPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 332 ~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
.+ ..+ ..||.|+.||.+++++|+++|++|++
T Consensus 275 ~~--~~~-~~vV~~v~ss~~~~~~~~~~g~~v~~ 305 (448)
T PRK14318 275 GE--LAS-DTLVATVMSNLGLKLAMREAGITVVT 305 (448)
T ss_pred cC--CCC-CcEEEEecCchHHHHHHHHcCCcEEE
Confidence 11 012 36999999999999999999998863
No 18
>PRK07564 phosphoglucomutase; Validated
Probab=100.00 E-value=7.7e-59 Score=476.86 Aligned_cols=327 Identities=30% Similarity=0.408 Sum_probs=264.5
Q ss_pred CcchhhhhhCCCCCCcCCCCCccccccc-ccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHH
Q 046205 3 MFNVTRKETAPIDGQKPGTSGLRKKVKV-FTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAA 81 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~Fgt~GiRG~~~~-~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s 81 (365)
|.+...+-. ..++++|||+||||+++. .+|++++.++++++|.++.+++ ..++|+||||+|.+|++|+++++++|++
T Consensus 25 ~~~~~~~~~-~~~~~~FGT~GiRg~~~~~~lt~~~v~~i~~a~a~~~~~~~-~~~~VvVG~D~R~~S~~~a~a~a~gL~s 102 (543)
T PRK07564 25 YTLKPDPTN-PFQDVKFGTSGHRGSSLQPSFNENHILAIFQAICEYRGKQG-ITGPLFVGGDTHALSEPAIQSALEVLAA 102 (543)
T ss_pred hcccCCCCC-CcCCCCCcccccccccCCCCcCHHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCcCCHHHHHHHHHHHHH
Confidence 333343333 347889999999999975 5999999999999999987432 1235999999999999999999999999
Q ss_pred cCCEEEEeCCCCcccchHHHHHHHHhhcCCCCC-----cceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHH
Q 046205 82 NGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSK-----ATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYE 156 (365)
Q Consensus 82 ~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~-----~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~ 156 (365)
+|++|+++++.|.+|||+++|+++++ + |++|||||||||| ++||||||++++|.+++++.+++||+
T Consensus 103 ~Gi~V~~~~~~g~~pTP~~~~av~~~------~~~~~~~~gGImITASHNP---~e~NGiK~~~~~G~~i~~~~~~~Ie~ 173 (543)
T PRK07564 103 NGVGVVIVGRGGYTPTPAVSHAILKY------NGRGGGLADGIVITPSHNP---PEDGGIKYNPPNGGPADTDVTDAIEA 173 (543)
T ss_pred CCCEEEEeCCCCcCCchHHHHHHHHh------CCCccccceeEEEecCCCC---cccCeEEEECCCCCcCChHHHHHHHH
Confidence 99999987545899999999999998 8 9999999999999 89999999999999999999999999
Q ss_pred HhhhhhhhhccCCCCCcccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHH
Q 046205 157 NTKTIKEYSIAEDLPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGA 236 (365)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~ 236 (365)
.++++..+. .+++++..++.++.. +.+...+..+.|++++.+.++.+.|++ +++|||+||+||+++.
T Consensus 174 ~~~~~~~~~-~e~~~~~~~~~~~~~--------g~~~~~d~~~~Y~~~l~~~i~~~~i~~----~~lkIvvD~~~G~~~~ 240 (543)
T PRK07564 174 RANELLAYG-LKGVKRIPLDRALAS--------MTVEVIDPVADYVEDLENVFDFDAIRK----AGLRLGVDPLGGATGP 240 (543)
T ss_pred HHHhhhhcc-cccccccChhHhccC--------CcEEecccHHHHHHHHHHhhChhhhhc----CCceEEEecCCCCcHH
Confidence 875422110 123444333333210 113345788999999999998776754 6899999999999999
Q ss_pred HHHHHHHHHcCCceeeeeccccCCCCC--------CCCCCCChh-cHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeee
Q 046205 237 YAKRIFVEELGAQESSLLNCTPKEDFG--------GGHPDPNLT-YAKELVARMGLGKSNTQDEPPEFGAAADGDADRNM 307 (365)
Q Consensus 237 ~~~~i~l~~lg~~v~~~~~~~~d~~f~--------~~~p~p~~~-~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~ 307 (365)
+++++ |++|||+++ .+++++||+|+ .+.|+|+.+ ++.++.+ + +.++|+|+++||||||++
T Consensus 241 ~~~~l-l~~lG~~v~-~l~~~~d~~f~~~~~~~~~~~~p~P~~~~~L~~l~~--~-------~~~adlGia~DgDgDRl~ 309 (543)
T PRK07564 241 YWKAI-AERYGLDLT-VVNAPVDPTFNFMPLDDDGKIRMDCSSPYAMAGLLA--L-------KDAFDLAFANDPDGDRHG 309 (543)
T ss_pred HHHHH-HHHcCCcEE-EeCCcCCCCCCCCCCCccCCcCCCCChHHHHHHHHh--h-------ccCCCEEEEECCCCCcee
Confidence 99999 799999987 49999999885 456888743 5455544 2 568999999999999999
Q ss_pred EeeCCEEeCCCchHHHHHHHHHhcCcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 308 ILGKRFFVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 308 ~vd~G~~l~~~~~lall~~~ll~~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
++|+|+++++++.++|+++|++++.+.+ ++...||.|++||.+++++|+++|++|++
T Consensus 310 vvd~G~~i~~d~~~alla~~ll~~~~~~-~~~~~Vv~~v~sS~~l~~ia~~~g~~v~~ 366 (543)
T PRK07564 310 IVTPGGLMNPNHYLAVAIAYLFHHRPGW-RAGAGVGKTLVSSAMIDRVAAKLGRKLYE 366 (543)
T ss_pred EEecCeeechhHHHHHHHHHHHHhCcCC-CCCceEEEEecchHHHHHHHHHhCCeeee
Confidence 9998999999999999999988642211 11136999999999999999999999874
No 19
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=100.00 E-value=2.3e-59 Score=484.22 Aligned_cols=322 Identities=20% Similarity=0.224 Sum_probs=261.3
Q ss_pred chhhhhhCCCCCCcCCCCCcccccccc---cchHHHHHHHHHHHHHhhhccc---CCCeEEEEecCCCChHHHHHHHHHH
Q 046205 5 NVTRKETAPIDGQKPGTSGLRKKVKVF---TQPNYLHNFVQSTFNALSAEKV---RGATLVVSGDGRYYSKDAIQIITKM 78 (365)
Q Consensus 5 ~~~~~~~~~~~~~~Fgt~GiRG~~~~~---~~~~~~~~l~~a~g~~l~~~~~---~~~~Vvvg~D~R~~s~~~~~a~a~g 78 (365)
+++||+++|..++.|||+||||+++.. +++..+.++++++|+++.+... ++++|+||||+|.+|++|+++++++
T Consensus 33 ~~~~l~~~f~~~i~FGT~GiRG~~g~~~~~~n~~~v~~~~~a~a~~l~~~~~~~~~~~~VvVg~D~R~~S~~fa~~~a~~ 112 (584)
T PTZ00150 33 DEEELKRRFLKRMEFGTAGLRGKMGAGFNCMNDLTVQQTAQGLCAYVIETFGQALKSRGVVIGYDGRYHSRRFAEITASV 112 (584)
T ss_pred CHHHHHHHhCCCCcccCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCcHHHHHHHHHH
Confidence 578899999999999999999999975 7788889999999999965321 2356999999999999999999999
Q ss_pred HHHcCCEEEEeCCCC-cccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHH
Q 046205 79 AAANGVRRVWIGQNG-LLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYEN 157 (365)
Q Consensus 79 L~s~G~~V~~~~~~g-~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~ 157 (365)
|+++|++|+++ | .+|||+++|+++++ +|++|||||||||| ++||||||++++|.+++++..+.|++.
T Consensus 113 L~a~Gi~V~~~---g~~~pTP~lsfav~~~------~a~gGImITASHNP---~eyNGiK~~~~~G~~i~~~~~~~i~~~ 180 (584)
T PTZ00150 113 FLSKGFKVYLF---GQTVPTPFVPYAVRKL------KCLAGVMVTASHNP---KEDNGYKVYWSNGAQIIPPHDKNISAK 180 (584)
T ss_pred HHHCCCEEEEe---CCCCCcHHHHHHHHHh------CCCeEEEEeccCCC---CCCCCEEEeCCCCcccCCcccHHHHHH
Confidence 99999999999 6 99999999999999 99999999999999 899999999999999966655555544
Q ss_pred hhhhhhhhccCCCCCcccccccccccCCCCCCccc-eeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHH
Q 046205 158 TKTIKEYSIAEDLPDVDISAVGVTSFGGPEGQFDV-EVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGA 236 (365)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~ 236 (365)
++.... .++ ..+...+. + ... ...+..+.|++++.+.++.+.|++ +++|||+||+||+++.
T Consensus 181 Ie~~~~-----~~~-~~~~~~~~-------~-~~~~~~~d~~~~Yi~~l~~~i~~~~i~~----~~lkIv~d~~~G~g~~ 242 (584)
T PTZ00150 181 ILSNLE-----PWS-SSWEYLTE-------T-LVEDPLAEVSDAYFATLKSEYNPACCDR----SKVKIVYTAMHGVGTR 242 (584)
T ss_pred HHHhcc-----ccc-cchhhhcc-------c-cccchhhhhHHHHHHHHHhhcChhhhcc----CCCeEEEeCCCCccHH
Confidence 433100 011 01111110 0 001 113668999999999888755654 6899999999999999
Q ss_pred HHHHHHHHHcCCc---eeeeeccccCCCCCCC-CCCCCh--hcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee
Q 046205 237 YAKRIFVEELGAQ---ESSLLNCTPKEDFGGG-HPDPNL--TYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 310 (365)
Q Consensus 237 ~~~~i~l~~lg~~---v~~~~~~~~d~~f~~~-~p~p~~--~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd 310 (365)
+++++ |++|||+ ++ .+++.|||+||+. .|+|+. +.+..+.+.++ +.++|+|+++||||||+++++
T Consensus 243 ~~~~i-L~~lG~~~~~~v-~~~~~pDg~Fp~~~~PnPe~~~~~l~~~~~~v~-------~~~adlgia~DpDaDR~~vvd 313 (584)
T PTZ00150 243 FVQKA-LHTVGLPNLLSV-AQQAEPDPEFPTVTFPNPEEGKGALKLSMETAE-------AHGSTVVLANDPDADRLAVAE 313 (584)
T ss_pred HHHHH-HHhcCCCCceEe-ccccccCcCCCCCCCcChhhhHHHHHHHHHHHH-------HhCCCEEEEeCCCCCceEEEE
Confidence 99999 7999997 33 3899999999987 789974 57777888887 889999999999999999998
Q ss_pred C-C---EEeCCCchHHHHHHHHHhcCccccc--CcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 311 K-R---FFVTPSDSVAIIAANAVESIPYFSA--GLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 311 ~-G---~~l~~~~~lall~~~ll~~~~~~~~--~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
+ | +++++++.++|++.|+++..+.... +...||+|++||.+++++|+++|++|++
T Consensus 314 ~~g~~~~~l~gd~l~aLla~~ll~~~~~~g~~~~~~~Vv~tv~sS~~l~~ia~~~g~~v~~ 374 (584)
T PTZ00150 314 KLNNGWKIFTGNELGALLAWWAMKRYRRQGIDKSKCFFICTVVSSRMLKKMAEKEGFQYDE 374 (584)
T ss_pred EcCCceEEcChhHHHHHHHHHHHHhhhhcCCCCCCcEEEEehhhhHHHHHHHHHcCCEEEE
Confidence 3 3 8999888888999999875321100 1135999999999999999999999874
No 20
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=100.00 E-value=3.7e-59 Score=469.43 Aligned_cols=300 Identities=23% Similarity=0.262 Sum_probs=255.1
Q ss_pred CCCCCcccccc-cccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccc
Q 046205 19 PGTSGLRKKVK-VFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLST 97 (365)
Q Consensus 19 Fgt~GiRG~~~-~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~pt 97 (365)
|||+||||++| +++||+++.++|+|||+++.++....++|+||||+|.+|++|++++++||+++|++|+++ |.+||
T Consensus 1 Fgt~giRG~~~~~~ltp~~~~~l~~a~~~~l~~~~~~~~~V~Vg~D~R~~s~~l~~a~~~gL~s~G~~V~~~---g~~pT 77 (443)
T TIGR01455 1 FGTDGVRGRAGQEPLTAELALLLGAAAGRVLRQGRDTAPRVVIGKDTRLSGYMLENALAAGLNSAGVDVLLL---GPLPT 77 (443)
T ss_pred CCCCccceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcChHHHHHHHHHHHHHCCCeEEEe---CCcCc
Confidence 99999999999 689999999999999999974321123699999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCccccc
Q 046205 98 PAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISA 177 (365)
Q Consensus 98 P~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~ 177 (365)
|+++|+++++ ++++|||||||||| ++||||||++++|.+++++.+++|++.+++ ++ .+++...+.
T Consensus 78 P~~~~av~~~------~~~gGI~iTaSHnP---~~~nGiK~~~~~G~~i~~~~~~~I~~~~~~-~~-----~~~~~~~~~ 142 (443)
T TIGR01455 78 PAVAYLTRTL------RADAGVMISASHNP---YEDNGIKFFGPGGFKLDDATEAAIEALLDE-AD-----PLPRPESEG 142 (443)
T ss_pred HHHHHHHHhc------CCCeEEEEecCCCC---cccCcEEEecCCCCcCCHHHHHHHHHHHhc-Cc-----cccCCCccC
Confidence 9999999999 99999999999999 899999999999999999999999888764 10 133333334
Q ss_pred ccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccc
Q 046205 178 VGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCT 257 (365)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~ 257 (365)
+|.+ ....+..+.|+++|.+.++. .|+ ++++|||+|++||+++.+++++ |++|||+++ .+|++
T Consensus 143 ~g~~----------~~~~~~~~~Y~~~l~~~i~~-~~~----~~~lkVvvD~~~G~~~~~~~~l-l~~lg~~v~-~in~~ 205 (443)
T TIGR01455 143 LGRV----------KRYPDAVGRYIEFLKSTLPR-GLT----LSGLKVVLDCANGAAYKVAPHV-FRELGAEVI-AIGVE 205 (443)
T ss_pred ceEE----------EEcccHHHHHHHHHHHHhhc-ccc----cCCCEEEEECCCchHHHHHHHH-HHHcCCEEE-EEccC
Confidence 4432 12346889999999988873 244 3689999999999999999999 799999987 59999
Q ss_pred cCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCcccc
Q 046205 258 PKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYFS 336 (365)
Q Consensus 258 ~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~~~ 336 (365)
|||.||...| ..+++.+|.+.|+ +.+||+|+++||||||++++| +|+++++++.++|++.++++... .
T Consensus 206 ~d~~~~~~~~--~~~~l~~l~~~v~-------~~~adlGia~DgD~DR~~~vd~~G~~l~~d~~~al~a~~ll~~~~--~ 274 (443)
T TIGR01455 206 PDGLNINDGC--GSTHLDALQKAVR-------EHGADLGIAFDGDADRVLAVDANGRIVDGDQILYIIARALKESGE--L 274 (443)
T ss_pred CCCCCCCCCC--CCCCHHHHHHHHh-------hcCCCEEEEEcCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhcC--C
Confidence 9999974443 3467888999988 889999999999999999998 58999988888888989887411 1
Q ss_pred cCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 337 AGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 337 ~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
++ ..||.|+.||.+++++|+++|++|++
T Consensus 275 ~~-~~vv~~v~ss~~l~~~a~~~g~~v~~ 302 (443)
T TIGR01455 275 AG-NTVVATVMSNLGLERALEKLGLTLIR 302 (443)
T ss_pred CC-CcEEEEccCCHHHHHHHHHcCCeEEE
Confidence 22 36999999999999999999999863
No 21
>PLN02371 phosphoglucosamine mutase family protein
Probab=100.00 E-value=4.9e-59 Score=481.00 Aligned_cols=309 Identities=21% Similarity=0.246 Sum_probs=259.0
Q ss_pred CCcCCCCCcccccc-----c--ccchHHHHHHHHHHHHHhhhcc----cCCCeEEEEecCCCChHHHHHHHHHHHHHcCC
Q 046205 16 GQKPGTSGLRKKVK-----V--FTQPNYLHNFVQSTFNALSAEK----VRGATLVVSGDGRYYSKDAIQIITKMAAANGV 84 (365)
Q Consensus 16 ~~~Fgt~GiRG~~~-----~--~~~~~~~~~l~~a~g~~l~~~~----~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~ 84 (365)
+.+|+++||||+++ . ++||+++.++|+|||+++..+. ...++|+||||+|.+|++|++++++||+++|+
T Consensus 65 ~~lf~~~giRGv~~~g~~g~~v~lTpe~v~~ig~A~a~~l~~~~~~~~~~~~~VvVG~D~R~sS~~l~~a~a~gL~s~Gi 144 (583)
T PLN02371 65 RKLQNGSDIRGVAVEGVEGEPVTLTPPAVEAIGAAFAEWLLEKKKADGSGELRVSVGRDPRISGPRLADAVFAGLASAGL 144 (583)
T ss_pred HHhhhhcCcceEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccccCCCCeEEEEeCCCCChHHHHHHHHHHHHHCCC
Confidence 45899999999997 3 8999999999999999997431 11247999999999999999999999999999
Q ss_pred EEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhh
Q 046205 85 RRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEY 164 (365)
Q Consensus 85 ~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~ 164 (365)
+|+++ |.+|||+++|+++.+. .++++|||||||||| ++||||||++++|.+++++++++|++.++...
T Consensus 145 ~V~~~---g~~pTP~~~~av~~~~----~~~~gGImITASHNP---~~~NGiK~~~~~G~~~~~~~~~~ie~~~~~~~-- 212 (583)
T PLN02371 145 DVVDM---GLATTPAMFMSTLTER----EDYDAPIMITASHLP---YNRNGLKFFTKDGGLGKPDIKDILERAARIYK-- 212 (583)
T ss_pred EEEEe---cccCchHHHHHHHhcc----CCCceEEEEeCCCCC---CCCCCEEEeCCCCCCCchHHHHHHHHHHhhcc--
Confidence 99999 9999999999999430 067899999999999 89999999999999999999999988765311
Q ss_pred hccCCCCCccc-----ccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHH----HhhcCCCCceEEEecCCCCcH
Q 046205 165 SIAEDLPDVDI-----SAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELI----RKLLSSPKFTFCYDALHGVAG 235 (365)
Q Consensus 165 ~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i----~~~~~~~~~kvvvd~~~Ga~~ 235 (365)
++++... ..+|. +...++.+.|+++|.+.++.+.| .+ .+.+++|||+||+||+++
T Consensus 213 ----e~~~~~~~~~~~~~~g~-----------i~~~d~~~~Y~~~l~~~i~~~~~~~~~~~-~~~~~lkIvvD~~nGag~ 276 (583)
T PLN02371 213 ----EWSDEGLLKSSSGASSV-----------VCRVDFMSTYAKHLRDAIKEGVGHPTNYE-TPLEGFKIVVDAGNGAGG 276 (583)
T ss_pred ----cccccccchhhhccCCc-----------EEEechHHHHHHHHHHHHHHhhccccccc-cCCCCCEEEEeCCCCchH
Confidence 1222111 12222 23357889999999998875443 11 013689999999999999
Q ss_pred HHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCCh-hcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCE
Q 046205 236 AYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNL-TYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRF 313 (365)
Q Consensus 236 ~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~-~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~ 313 (365)
.+++++ |++|||+++..++++|||.||++.|+|+. +++.++.+.|+ +.+||+||++||||||++++| +|+
T Consensus 277 ~~~~~l-L~~LG~~v~~~~~~~pDg~Fp~~~P~P~~~~~l~~l~~~v~-------~~~aDlGia~DgDaDR~~vvD~~G~ 348 (583)
T PLN02371 277 FFAEKV-LEPLGADTSGSLFLEPDGMFPNHIPNPEDKAAMSATTQAVL-------ANKADLGIIFDTDVDRSAVVDSSGR 348 (583)
T ss_pred HHHHHH-HHHcCCCeEeeccCCCCCCCCCcCCCCCCHHHHHHHHHHHH-------hcCCCEEEEECCCccceeEECCCCE
Confidence 999999 79999998623899999999999999986 47889999998 889999999999999999999 599
Q ss_pred EeCCCchHHHHHHHHHhcCcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 314 FVTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 314 ~l~~~~~lall~~~ll~~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
++++++.++|++.++++. .++ ..||+|+.||++++++|+++|+++++
T Consensus 349 ~i~gd~l~aLla~~ll~~----~~g-~~VV~~v~sS~~l~~ia~~~G~~v~r 395 (583)
T PLN02371 349 EINRNRLIALMSAIVLEE----HPG-TTIVTDSVTSDGLTTFIEKKGGKHHR 395 (583)
T ss_pred EECHHHHHHHHHHHHHHh----CCC-CEEEEecccchhHHHHHHHcCCeEEE
Confidence 999888888999999874 232 46999999999999999999999863
No 22
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=100.00 E-value=5.4e-59 Score=468.26 Aligned_cols=292 Identities=22% Similarity=0.243 Sum_probs=251.5
Q ss_pred CCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccch
Q 046205 19 PGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTP 98 (365)
Q Consensus 19 Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP 98 (365)
|||+||||++|+++||+++.++|+|+|+++..+ .+++|+||||+|.+|++|+++++++|+++|++|+++ |.+|||
T Consensus 1 f~~~giRG~~~~~lt~~~v~~l~~a~~~~l~~~--~~~~VvVg~D~R~~s~~l~~a~~~gL~s~G~~V~~l---g~~pTP 75 (445)
T PRK09542 1 IKAYDVRGVVGEQIDEDLVRDVGAAFARLMRAE--GATTVVIGHDMRDSSPELAAAFAEGVTAQGLDVVRI---GLASTD 75 (445)
T ss_pred CCccccccccCCCcCHHHHHHHHHHHHHHHHHc--CCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCEEEEe---CCCCCH
Confidence 899999999999999999999999999999742 246799999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhh-HHHHHHHhhhhhhhhccCCCCCccccc
Q 046205 99 AVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGI-TDKIYENTKTIKEYSIAEDLPDVDISA 177 (365)
Q Consensus 99 ~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~-~~~Ie~~~~~~~~~~~~~~~~~~~~~~ 177 (365)
+++|+++++ +| +|||||||||| ++|||+|++.+.|.+++++. ++.|++.+.+ .++ .....
T Consensus 76 ~~~~av~~~------~~-~Gi~iTaSHNP---~~~nG~Ki~~~~~~~~~~~~~i~~i~~~~~~--------~~~-~~~~~ 136 (445)
T PRK09542 76 QLYFASGLL------DC-PGAMFTASHNP---AAYNGIKLCRAGAKPVGQDTGLAAIRDDLIA--------GVP-AYDGP 136 (445)
T ss_pred HHHheeccc------CC-CEEEEcCCCCC---CccCcEEEecCCCcccCchhHHHHHHHHHhc--------ccc-cccCC
Confidence 999999998 88 69999999999 89999999998888888763 4555444332 111 10112
Q ss_pred ccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccc
Q 046205 178 VGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCT 257 (365)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~ 257 (365)
+|. +...+..+.|++++.+.+|.+.| +++|||+||+||+++.+++++ |++|||+++ .+|++
T Consensus 137 ~g~-----------~~~~~~~~~Y~~~l~~~i~~~~i------~~lkVvvd~~~Ga~~~~~~~l-l~~lg~~vv-~~~~~ 197 (445)
T PRK09542 137 PGT-----------VTERDVLADYAAFLRSLVDLSGI------RPLKVAVDAGNGMGGHTVPAV-LGGLPITLL-PLYFE 197 (445)
T ss_pred CCc-----------eeccChHHHHHHHHHHhcccccC------CCCEEEEECCCCchhHHHHHH-HHhCCCEEE-EEecC
Confidence 332 23457899999999998876433 489999999999999999999 799999987 49999
Q ss_pred cCCCCCCCCCCCC-hhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCccc
Q 046205 258 PKEDFGGGHPDPN-LTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYF 335 (365)
Q Consensus 258 ~d~~f~~~~p~p~-~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~~ 335 (365)
|||+||++.|+|+ .+++.++.+.++ +.+||+|+++||||||++++| +|+++++++.+++++.+++++.
T Consensus 198 ~d~~Fp~~~p~P~~~~~l~~l~~~v~-------~~~adlGia~DgD~DR~~ivd~~G~~l~~d~~~~l~~~~~l~~~--- 267 (445)
T PRK09542 198 LDGTFPNHEANPLDPANLVDLQAFVR-------ETGADIGLAFDGDADRCFVVDERGQPVSPSAVTALVAARELARE--- 267 (445)
T ss_pred cCCCCCCCCcCCCCHHHHHHHHHHHH-------HcCCCEEEEECCCCceEEEECCCCCCccHHHHHHHHHHHHHHHC---
Confidence 9999999999997 468889999998 889999999999999999999 5999998989899998888741
Q ss_pred ccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 336 SAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 336 ~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
++ ..||+|+.||++++++|+++|+++++
T Consensus 268 -~~-~~vv~~v~ss~~~~~~a~~~g~~~~~ 295 (445)
T PRK09542 268 -PG-ATIIHNLITSRAVPELVAERGGTPVR 295 (445)
T ss_pred -CC-CeEEEeeccchhHHHHHHHcCCeEEE
Confidence 22 46999999999999999999999864
No 23
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.1e-58 Score=465.70 Aligned_cols=294 Identities=21% Similarity=0.272 Sum_probs=250.1
Q ss_pred CCCcCCCCCccccccc-ccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCC
Q 046205 15 DGQKPGTSGLRKKVKV-FTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNG 93 (365)
Q Consensus 15 ~~~~Fgt~GiRG~~~~-~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g 93 (365)
.+.+|||+||||++|. ++||+++.++|+|+|+++..++ .+++|+||||+|.+|++|++++++||+++|++|+++ |
T Consensus 2 ~~~~Fgt~giRG~~~~~~lt~e~~~~lg~a~g~~l~~~~-~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g 77 (440)
T PRK14323 2 ERRYFGTDGVRGVAGEPPLTPEFVLKLGQAAGEVFKRHG-PRPVVLLGKDTRQSGDMLEAALAAGLTSRGVRVEHL---G 77 (440)
T ss_pred CccEeCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEeCCCccHHHHHHHHHHHHHHCCCEEEEe---c
Confidence 5789999999999996 7999999999999999997432 245699999999999999999999999999999999 9
Q ss_pred cccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCc
Q 046205 94 LLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDV 173 (365)
Q Consensus 94 ~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~ 173 (365)
.+|||+++|+++++ ++++|||||||||| ++||||||++++|.+++++.+++||+.+++.+ +++++
T Consensus 78 ~~pTP~~~~av~~~------~~~gGI~ITaSHnP---~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~~~------~~~~~ 142 (440)
T PRK14323 78 VLPTPGVSYLTRHL------GATAGVVISASHNP---YQDNGIKFFGADGEKLPDAAELEIEALLDEVP------ELAEV 142 (440)
T ss_pred ccChHHHHHHHHHh------CCCEEEEEecCCCC---CccCCEEEeCCCCCcCCHHHHHHHHHHHhccc------ccCcc
Confidence 99999999999999 99999999999999 89999999999999999999999998876422 33333
Q ss_pred ccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeee
Q 046205 174 DISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSL 253 (365)
Q Consensus 174 ~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~ 253 (365)
.+..+|.+ ....+..+.|++++.+.++. .+++|||+||+||+++.+++++ |++|||+++ .
T Consensus 143 ~~~~~g~~----------~~~~~~~~~Y~~~l~~~~~~--------~~~~kVvvD~~~G~~~~~~~~l-l~~lG~~v~-~ 202 (440)
T PRK14323 143 TGAGIGSV----------SDFTEAERLYLDFLLSHAPD--------LSGLKVALDCANGAAYRLAPKV-FQAAGADVF-A 202 (440)
T ss_pred cccCceeE----------EEhhhHHHHHHHHHHHhccc--------ccCCEEEEECCCchHHHHHHHH-HHHcCCcEE-E
Confidence 33334432 11236789999999876641 2589999999999999999999 799999997 4
Q ss_pred eccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcC
Q 046205 254 LNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESI 332 (365)
Q Consensus 254 ~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~ 332 (365)
+|++||+.|+... |..+++.+|.+.|+ +.++|+|+++||||||++++| +|++++++..++|++.+. .
T Consensus 203 l~~~~dg~~~~~~--~~~~~l~~l~~~v~-------~~~adlGia~DgD~DR~~~vD~~G~~i~~d~~~~l~a~~~-~-- 270 (440)
T PRK14323 203 LFNTPDGRNINRG--CGSTHPEALQRFVV-------EGGLDLGVAFDGDADRALFVDRRGRLFHGDHMLYLNALAR-G-- 270 (440)
T ss_pred EeccCCCCcCCCC--CCCCCHHHHHHHHh-------ccCCCEEEEeCCCcceeEEECCCCcEeCHHHHHHHHHHHh-c--
Confidence 9999999987443 33467888999998 889999999999999999999 599999777766666432 1
Q ss_pred cccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 333 PYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 333 ~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
. ..||.|+.||.+++++|+++|++|++
T Consensus 271 ----~--~~vV~~v~ss~~~~~~~~~~g~~v~~ 297 (440)
T PRK14323 271 ----E--KAVVGTVMSNMALEVKLREAGIAFHR 297 (440)
T ss_pred ----C--CcEEEEeCCChHHHHHHHHcCCeEEE
Confidence 2 36999999999999999999999863
No 24
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=100.00 E-value=7.9e-59 Score=468.20 Aligned_cols=295 Identities=21% Similarity=0.236 Sum_probs=251.7
Q ss_pred CcCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCccc
Q 046205 17 QKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLS 96 (365)
Q Consensus 17 ~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~p 96 (365)
.+|||+||||++|+++||+++.++|+|+|+++. . ++|+||||+|.+|++|+++++++|+++|++|+++ |.+|
T Consensus 5 ~~Fg~~GiRG~~~~~lt~~~~~~~~~a~a~~l~----~-~~VvVg~D~R~ss~~l~~a~a~gL~s~Gi~V~~~---g~~p 76 (456)
T PRK15414 5 TCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLK----P-KTIVLGGDVRLTSETLKLALAKGLQDAGVDVLDI---GMSG 76 (456)
T ss_pred ceecccCcceeeCCCcCHHHHHHHHHHHHHHhc----C-CeEEEEECCCCChHHHHHHHHHHHHHCCCeEEEe---CCcC
Confidence 689999999999999999999999999999985 2 3799999999999999999999999999999999 9999
Q ss_pred chHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhh-HHHHHHHhhhhhhhhccCCCCCccc
Q 046205 97 TPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGI-TDKIYENTKTIKEYSIAEDLPDVDI 175 (365)
Q Consensus 97 tP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~-~~~Ie~~~~~~~~~~~~~~~~~~~~ 175 (365)
||+++|+++++ ++++|||||||||| ++|||+|+++++|.+++++. +++|++.+++ + +++++..
T Consensus 77 TP~~~~av~~~------~~~gGI~ITaSHNP---~~~NG~Ki~~~~g~~~~~~~~~~~i~~~~~~-~------~~~~~~~ 140 (456)
T PRK15414 77 TEEIYFATFHL------GVDGGIEVTASHNP---MDYNGMKLVREGARPISGDTGLRDVQRLAEA-N------DFPPVDE 140 (456)
T ss_pred hHHHHHhhhcc------CCCeEEEEecCCCC---CCCCCEEeecCCCcccCcHHHHHHHHHHHhc-C------Ccccccc
Confidence 99999999999 99999999999999 89999999999998998864 4567666543 1 3333222
Q ss_pred ccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHH--HHHcCCceee-
Q 046205 176 SAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIF--VEELGAQESS- 252 (365)
Q Consensus 176 ~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~--l~~lg~~v~~- 252 (365)
...|. +...+..+.|++++.+.+|.+.+ +++|||+||+||+++.+++.++ |++|||++..
T Consensus 141 ~~~g~-----------~~~~~~~~~Yi~~l~~~id~~~~------~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~ 203 (456)
T PRK15414 141 TKRGR-----------YQQINLRDAYVDHLFGYINVKNL------TPLKLVINSGNGAAGPVVDAIEARFKALGAPVELI 203 (456)
T ss_pred cCCCc-----------EEecCcHHHHHHHHHHhcccccC------CCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEE
Confidence 23333 22346889999999998875432 5899999999999999999872 4899995431
Q ss_pred eeccccCCCCCCCCCCCCh-hcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHh
Q 046205 253 LLNCTPKEDFGGGHPDPNL-TYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVE 330 (365)
Q Consensus 253 ~~~~~~d~~f~~~~p~p~~-~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~ 330 (365)
.++++|||.||++.|||+. +++.++.+.++ +.+||+|+++||||||++++| +|+++++++.++|+++|+++
T Consensus 204 ~~~~~pdg~F~~~~p~P~~~~~l~~l~~~v~-------~~~adlGia~DgDaDR~~~vde~G~~l~~d~~~~l~a~~ll~ 276 (456)
T PRK15414 204 KVHNTPDGNFPNGIPNPLLPECRDDTRNAVI-------KHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLE 276 (456)
T ss_pred EeecCCCCCCCCCCCCCCCHHHHHHHHHHHH-------HcCCCEEEEECCCcceEEEECCCCCEecHHHHHHHHHHHHHH
Confidence 3899999999999999985 58889999998 889999999999999999999 59999988888899999987
Q ss_pred cCcccccCcceEEEeccchHHHHHHHHhcCCcee
Q 046205 331 SIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFF 364 (365)
Q Consensus 331 ~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~ 364 (365)
. .++ ..||.++.||..++++|+++|++++
T Consensus 277 ~----~~g-~~vv~~~~~s~~l~~~~~~~g~~~~ 305 (456)
T PRK15414 277 K----NPG-AKIIHDPRLSWNTVDVVTAAGGTPV 305 (456)
T ss_pred h----CCC-CeeccCchhhhHHHHHHHHcCCEEE
Confidence 4 122 3588877777799999999999876
No 25
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=100.00 E-value=2.3e-58 Score=468.87 Aligned_cols=310 Identities=22% Similarity=0.265 Sum_probs=261.1
Q ss_pred CCcCCCCCcccccccc---cchHHHHHHHHHHHHHhhhcc--cCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeC
Q 046205 16 GQKPGTSGLRKKVKVF---TQPNYLHNFVQSTFNALSAEK--VRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIG 90 (365)
Q Consensus 16 ~~~Fgt~GiRG~~~~~---~~~~~~~~l~~a~g~~l~~~~--~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~ 90 (365)
++.|||+||||+++.. +|++.+.++|+|||+++.++. .++++|+||||+|.+|++|+++++++|+++|++|+++
T Consensus 1 ~~~Fgt~giRg~~~~~~~~l~~~~~~~l~~a~~~~l~~~~~~~~~~~V~Vg~D~R~~s~~~~~a~~~gL~s~Gi~V~~~- 79 (487)
T cd05799 1 RLEFGTAGLRGKMGAGTNRMNDYTVRQATQGLANYLKKKGPDAKNRGVVIGYDSRHNSREFAELTAAVLAANGIKVYLF- 79 (487)
T ss_pred CCcccCcccccccCCCCccccHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCCCChHHHHHHHHHHHHHCCCEEEEe-
Confidence 4689999999999985 999999999999999997432 1336799999999999999999999999999999999
Q ss_pred CCC-cccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCC
Q 046205 91 QNG-LLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAED 169 (365)
Q Consensus 91 ~~g-~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~ 169 (365)
| .+|||+++|+++++ ++++|||||||||| ++||||||++++|.+++++.+++|++.+++.+ +
T Consensus 80 --g~~~ptP~~~~~i~~~------~~~gGI~iTaSHnp---~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~------~ 142 (487)
T cd05799 80 --DDLRPTPLLSFAVRHL------GADAGIMITASHNP---KEYNGYKVYWEDGAQIIPPHDAEIAEEIEAVL------E 142 (487)
T ss_pred --CCCCCCcHHHHHHHHh------CCCeeEEEEeeCCC---cccCCEEEecCCCCcCCCHHHHHHHHHHHhcc------c
Confidence 7 99999999999999 99999999999999 89999999999999999999999999987632 2
Q ss_pred CCC---cccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHH-HhhcCCCCceEEEecCCCCcHHHHHHHHHHH
Q 046205 170 LPD---VDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELI-RKLLSSPKFTFCYDALHGVAGAYAKRIFVEE 245 (365)
Q Consensus 170 ~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i-~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~ 245 (365)
+++ .....+|.+. ....+..+.|++.|.+.++...+ + .+++||||||+||+++.+++++ |++
T Consensus 143 ~~~~~~~~~~~~g~~~---------~~~~~~~~~Y~~~l~~~i~~~~~~~----~~~~kVvvD~~~G~~~~~~~~i-l~~ 208 (487)
T cd05799 143 PLDIKFEEALDSGLIK---------YIGEEIDDAYLEAVKKLLVNPELNE----GKDLKIVYTPLHGVGGKFVPRA-LKE 208 (487)
T ss_pred ccccchhhhccCCceE---------EcchHHHHHHHHHHHhhhccccccc----CCCCcEEEeCCCCccHHHHHHH-HHH
Confidence 222 1223344321 01126789999999998885433 3 2689999999999999999999 799
Q ss_pred cCCc-ee-eeeccccCCCCCCC-CCCCCh-hcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-C----CEEeC
Q 046205 246 LGAQ-ES-SLLNCTPKEDFGGG-HPDPNL-TYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-K----RFFVT 316 (365)
Q Consensus 246 lg~~-v~-~~~~~~~d~~f~~~-~p~p~~-~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~----G~~l~ 316 (365)
|||+ ++ ..++++|||.||+. .|+|+. +++.++.+.|+ +.++|+|+++||||||+.++| + |++++
T Consensus 209 LG~~~v~~~~~~~~~d~~F~~~~~p~p~~~~~l~~l~~~v~-------~~~ad~Gia~D~DgDR~~vvd~~~~~~g~~~~ 281 (487)
T cd05799 209 AGFTNVIVVEEQAEPDPDFPTVKFPNPEEPGALDLAIELAK-------KVGADLILATDPDADRLGVAVKDKDGEWRLLT 281 (487)
T ss_pred cCCCCcEEeeeccCCCcCCCCCCCCCCCCHHHHHHHHHHHH-------HhCCCEEEEeCCCCCeEEEEEEcCCCCEEEEC
Confidence 9999 42 13899999999984 899985 58889999998 889999999999999999998 2 69999
Q ss_pred CCchHHHHHHHHHhcCcc---cccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 317 PSDSVAIIAANAVESIPY---FSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 317 ~~~~lall~~~ll~~~~~---~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
+++.++|++.++++..+. +. +...||+|+.||++++++|+++|++|++
T Consensus 282 ~d~l~aL~a~~ll~~~~~~~~~~-~~~~vV~~v~sS~~i~~ia~~~g~~v~~ 332 (487)
T cd05799 282 GNEIGALLADYLLEQRKEKGKLP-KNPVIVKTIVSSELLRKIAKKYGVKVEE 332 (487)
T ss_pred HHHHHHHHHHHHHHhHhhccCCC-CCcEEEEeehhHHHHHHHHHHcCCeEEE
Confidence 888888889888874210 11 2246999999999999999999999864
No 26
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=100.00 E-value=6.5e-58 Score=470.00 Aligned_cols=315 Identities=26% Similarity=0.306 Sum_probs=255.8
Q ss_pred CCcCCCCCccccccc-ccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCc
Q 046205 16 GQKPGTSGLRKKVKV-FTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGL 94 (365)
Q Consensus 16 ~~~Fgt~GiRG~~~~-~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~ 94 (365)
+++|||+||||+++. .+|++++.++++|++.++.+.+ ...+|+||||+|.+|++|+++++++|+++|++|++++..|.
T Consensus 38 ~~~FGT~GiRG~~~~~~lt~~~~~~i~~a~a~~~~~~~-~~~~VvVG~D~R~sS~~~~~a~a~gL~s~Gi~V~~~~~~G~ 116 (543)
T TIGR01132 38 AVKFGTSGHRGSALRGTFNEPHILAIAQAIAEYRAAQG-ITGPLYIGKDTHALSEPAFISVLEVLAANGVEVIVQENNGF 116 (543)
T ss_pred ccCCcCccccCCcccCccCHHHHHHHHHHHHHHHHHhC-CCCcEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEEeCCCCc
Confidence 699999999999985 4999999999999999986432 12359999999999999999999999999999999643389
Q ss_pred ccchHHHHHHHHhhcCCCCC-----cceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCC
Q 046205 95 LSTPAVSAVIRERVGSDGSK-----ATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAED 169 (365)
Q Consensus 95 ~ptP~~~~av~~~~~~~~~~-----~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~ 169 (365)
+|||+++|+++++ + |.+|||||||||| ++||||||++++|.+++++.+++||+.++.+.+.. .++
T Consensus 117 ~pTP~~~~av~~~------~~~~~~~~gGI~ITASHNP---~e~NGiK~~~~~G~~i~~~~~~~Ie~~i~~~~~~~-~e~ 186 (543)
T TIGR01132 117 TPTPAVSHAILTH------NKKGEPLADGIVITPSHNP---PEDGGIKYNPPNGGPADTEATQAIEDRANALLANG-LKG 186 (543)
T ss_pred CCchHHHHHHHHh------cccccccceEEEEeCCCCC---CccCeEEEECCCCCCCChHHHHHHHHHHHHhhhcc-ccc
Confidence 9999999999988 6 7889999999999 89999999999999999999999998765321100 013
Q ss_pred CCCcccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCc
Q 046205 170 LPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQ 249 (365)
Q Consensus 170 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~ 249 (365)
+++..++..+. .+.+...+..+.|++++.+.++.+.|+. +++|||+||+||+++.+++++ |++|||+
T Consensus 187 ~~~~~~~~~~~--------~g~~~~~d~~~~Y~~~l~~~i~~~~i~~----~~lkVvvD~~~Ga~~~~~~~i-l~~lG~~ 253 (543)
T TIGR01132 187 VKRLPLAQALA--------SGTVKAHDLVQPYVDGLADIVDMAAIQK----AGLRLGVDPLGGSGIDYWKRI-AEKYNLN 253 (543)
T ss_pred ccccChhhhhc--------cCceecCCcHHHHHHHHHHhhhhhhhhc----CCceEEEeCCCCCcHHHHHHH-HHHcCCC
Confidence 44433322221 0113335788999999999988776654 689999999999999999999 7999999
Q ss_pred eeeeeccccCCCCCCCCCCCC---------hhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEeeCCEEeCCCch
Q 046205 250 ESSLLNCTPKEDFGGGHPDPN---------LTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKRFFVTPSDS 320 (365)
Q Consensus 250 v~~~~~~~~d~~f~~~~p~p~---------~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd~G~~l~~~~~ 320 (365)
++ .+|+++||.||.++|+|+ .+++.++.+ + +.++|+|+++||||||++++|+.+++++++.
T Consensus 254 v~-~l~~~~d~~f~~~~pd~~~~~~~~~~~~e~l~~l~~--~-------~~~aDlGia~DgDaDR~~vvd~~g~i~gd~~ 323 (543)
T TIGR01132 254 LT-LVNPQVDPTFRFMTLDKDGKIRMDCSSPYAMAGLLA--L-------RDKYDLAFGNDPDYDRHGIVTPAGLMNPNHY 323 (543)
T ss_pred EE-EEcCeeCCCCCCCCCCcccccCCCCCCHHHHHHHhh--c-------ccCCCEEEEeCCCCCCeeEEecCceeCHHHH
Confidence 87 499999999998766422 245555555 3 6789999999999999999995346998888
Q ss_pred HHHHHHHHHhcCcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 321 VAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 321 lall~~~ll~~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
++|++.|+++..+.+. +...|+.|+.||.+++++|+++|++|++
T Consensus 324 ~aLla~~ll~~~~~~~-~~~~Vv~tv~sS~~l~~ia~~~g~~v~~ 367 (543)
T TIGR01132 324 LAVAINYLFQHRPQWG-GDVAVGKTLVSSAMIDRVVADLGRQLVE 367 (543)
T ss_pred HHHHHHHHHHhCcccC-CCceEEEEeccHHHHHHHHHHcCCceee
Confidence 8899999987532111 3236889999999999999999999864
No 27
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=4.9e-58 Score=461.20 Aligned_cols=295 Identities=18% Similarity=0.239 Sum_probs=250.3
Q ss_pred CcCCCCCcccccc-cccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcc
Q 046205 17 QKPGTSGLRKKVK-VFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLL 95 (365)
Q Consensus 17 ~~Fgt~GiRG~~~-~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ 95 (365)
.+|||+||||+++ .++||+++.++|+|||+++..+. ..+.|+||||+|.+|++|++++++||+++|++|+++ |.+
T Consensus 3 ~~Fgt~giRG~~~~~~ltpe~~~~lg~a~g~~l~~~~-~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~d~---g~~ 78 (443)
T PRK14320 3 KYFGTDGIRGEVANSTITVEFTQKLGNAVGSLINQKN-YPKFVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDL---GVV 78 (443)
T ss_pred cccCCCCeeeEcCCCCCCHHHHHHHHHHHHHhHhhCC-CCCeEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEe---ccc
Confidence 6899999999996 67999999999999999996422 225699999999999999999999999999999999 999
Q ss_pred cchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCccc
Q 046205 96 STPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDI 175 (365)
Q Consensus 96 ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~ 175 (365)
|||+++|+++++ ++++|||||||||| ++||||||++++|.+++++.+++|++.+.. ++++..+
T Consensus 79 pTP~~~~av~~~------~~~gGI~ITaSHNp---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~--------~~~~~~~ 141 (443)
T PRK14320 79 PTPVVAFMTVKH------RAAAGFVITASHNK---FTDNGIKLFSSNGFKLDDALEEEVEDMIDG--------DFIYQPQ 141 (443)
T ss_pred CchHHHHHHHHc------CCceEEEEEeCCCc---hHHCeEEEECCCCCcCCHHHHHHHHHHHhc--------ccccccc
Confidence 999999999999 99999999999999 899999999999999999999999887542 3333332
Q ss_pred ccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeec
Q 046205 176 SAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLN 255 (365)
Q Consensus 176 ~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~ 255 (365)
.++|.+ ....+..+.|++++.+.++ .+++ .++|||+||+||+++.+++++ |++|||+++ .+|
T Consensus 142 ~~~g~~----------~~~~~~~~~Y~~~l~~~~~--~~~~----~~~kVvvD~~nG~~~~~~~~l-l~~lg~~v~-~i~ 203 (443)
T PRK14320 142 FKFGSY----------KILANAIDEYIESIHSRFA--KFVN----YKGKVVVDCAHGAASHNFEAL-LDKFGINYV-SIA 203 (443)
T ss_pred ccCcce----------EeccchHHHHHHHHHHHHH--hhcc----CCCEEEEECCCchHHHHHHHH-HHHcCCcEE-EEC
Confidence 334432 1124678999999988765 2232 357999999999999999999 799999987 499
Q ss_pred cccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCcc
Q 046205 256 CTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPY 334 (365)
Q Consensus 256 ~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~ 334 (365)
++|||.|+ +|+|..+++.++.+.++ +.++|+|+++||||||++++| +|+++++++.++|++.|+++.
T Consensus 204 ~~~dg~~~--~~~~~~~~l~~l~~~v~-------~~~adlGia~DgDaDR~~~vd~~G~~l~gd~~~al~a~~l~~~--- 271 (443)
T PRK14320 204 SNPDGLNI--NVGCGATCVSNIKKAVK-------EQKADLGISLDGDADRIIIVDENGQEIDGDGILNILAQYSDIC--- 271 (443)
T ss_pred CcCCCCCC--CCCCchHhHHHHHHHHH-------HcCCCEEEEECCCCceEEEECCCCcccCHHHHHHHHHHHHHHh---
Confidence 99999997 34444467888999998 889999999999999999999 599999887888888887752
Q ss_pred cccCcceEEEeccchHHHHHHHHhcCCcee
Q 046205 335 FSAGLKGVARSMPTSAALDVVAKNLNLKFF 364 (365)
Q Consensus 335 ~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~ 364 (365)
++...||.++.||.+++++|+++|++++
T Consensus 272 --~~~~~vV~~~~~s~~~~~~~~~~g~~~~ 299 (443)
T PRK14320 272 --GGTNGIVGTQMTNMSYENHYRANKIPFI 299 (443)
T ss_pred --CCCCCEEEecCCcHHHHHHHHHCCCCEE
Confidence 1113689999999999999999999986
No 28
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=2.8e-57 Score=463.59 Aligned_cols=319 Identities=24% Similarity=0.293 Sum_probs=255.9
Q ss_pred CCCCCCcCCCCCccccccc-ccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeC
Q 046205 12 APIDGQKPGTSGLRKKVKV-FTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIG 90 (365)
Q Consensus 12 ~~~~~~~Fgt~GiRG~~~~-~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~ 90 (365)
...++++|||+||||+++. .+|++++.++++|+|+++.+++ ..++|+||||+|..|++++++++++|+++|++|+++.
T Consensus 16 ~~~~~~~FGT~GiRG~~g~~~lt~~~v~~i~~a~~~~l~~~~-~~~~VvVg~D~R~~S~~~~~~~~~gL~s~Gi~V~~~~ 94 (522)
T cd05801 16 NPAQRVAFGTSGHRGSSLKGSFNEAHILAISQAICDYRKSQG-ITGPLFLGKDTHALSEPAFISALEVLAANGVEVIIQQ 94 (522)
T ss_pred CCcceeeEEcccccCccCCCchhHHHHHHHHHHHHHHHHhhC-CCCeEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 3445799999999999985 5999999999999999996432 1245999999999999999999999999999999743
Q ss_pred CCCcccchHHHHHHHHhhcCCCCCcc------eeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhh
Q 046205 91 QNGLLSTPAVSAVIRERVGSDGSKAT------GAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEY 164 (365)
Q Consensus 91 ~~g~~ptP~~~~av~~~~~~~~~~~~------gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~ 164 (365)
+.|.+|||+++|+++++ +++ ||||||||||| ++||||||++++|.+++++++++||+.+..+.+.
T Consensus 95 ~~g~~pTP~~~~av~~~------~~~~~~~~~gGI~ITASHNP---~~~NGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~ 165 (522)
T cd05801 95 NDGYTPTPVISHAILTY------NRGRTEGLADGIVITPSHNP---PEDGGFKYNPPHGGPADTDITRWIEKRANALLAN 165 (522)
T ss_pred CCCCCCchHHHHHHHHh------ccccccCCCcEEEEECCCCC---cccCEEEEECCCCCCCCHHHHHHHHHhhhhhhhc
Confidence 23899999999999998 776 49999999999 8999999999999999999999999875432100
Q ss_pred hccCCCCCcccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHH
Q 046205 165 SIAEDLPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVE 244 (365)
Q Consensus 165 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~ 244 (365)
. .++++++.++.+- ..+.+...+..+.|++++.+.++.+.|++ +++|||+||+||+++.+++++ |+
T Consensus 166 ~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~Y~~~l~~~v~~~~~~~----~~lkVvvd~~~G~~~~~~~~l-l~ 231 (522)
T cd05801 166 G-LKGVKRIPLEAAL--------ASGYTHRHDFVTPYVADLGNVIDMDAIRK----SGLRLGVDPLGGASVPYWQPI-AE 231 (522)
T ss_pred c-cccccccchhhhh--------ccCceecCCcHHHHHHHHHHhhChhhhhc----CCceEEEeCCCCccHHHHHHH-HH
Confidence 0 0123333222210 00112234789999999999998776664 689999999999999999999 79
Q ss_pred HcCCceeeeeccccCCCCCCCCCC--------CC-hhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEE
Q 046205 245 ELGAQESSLLNCTPKEDFGGGHPD--------PN-LTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFF 314 (365)
Q Consensus 245 ~lg~~v~~~~~~~~d~~f~~~~p~--------p~-~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~ 314 (365)
+|||+++ ++++.|||.||.++|+ |+ .+++.++.+. ..++|+|+++||||||++++| +|++
T Consensus 232 ~lG~~v~-~l~~~~d~~f~~~~p~~~~~~~~~p~~~~~l~~l~~~---------~~~adlGia~DgDaDRl~vvd~~G~~ 301 (522)
T cd05801 232 KYGLNLT-VVNPKVDPTFRFMTLDHDGKIRMDCSSPYAMAGLLKL---------KDKFDLAFANDPDADRHGIVTPSAGL 301 (522)
T ss_pred HcCCCEE-EEcCeeCCCCCCCCCCcccCCCCCCCCHHHHHHHHHh---------hcCCCEEEEECCCccceeEEecCCeE
Confidence 9999987 5999999999977664 32 3455555554 237999999999999999999 5999
Q ss_pred eCCCchHHHHHHHHHhcCcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 315 VTPSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 315 l~~~~~lall~~~ll~~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
+++++.++|+++|++++.+.+. +...||.+++||.+++++|+++|+++++
T Consensus 302 l~gd~~~aLla~~ll~~~~~~~-~~~~vv~tv~sS~~l~~ia~~~g~~~~~ 351 (522)
T cd05801 302 MNPNHYLSVAIDYLFTHRPLWN-KSAGVGKTLVSSSMIDRVAAALGRKLYE 351 (522)
T ss_pred ECHHHHHHHHHHHHHHhCcccC-CCceEEEEcchHHHHHHHHHHcCCeeee
Confidence 9988888899999987522111 1246999999999999999999999864
No 29
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.7e-57 Score=454.08 Aligned_cols=290 Identities=22% Similarity=0.262 Sum_probs=246.1
Q ss_pred CCcCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcc
Q 046205 16 GQKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLL 95 (365)
Q Consensus 16 ~~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ 95 (365)
-.+|||+||||++|+++||+++.++|+|||+++. .+ +|+||||+|.+|++|++++++||+++|++|+++ |.+
T Consensus 3 ~~~Fg~~gIRG~~~~~ltpe~~~~lg~a~~~~l~----~~-~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~ 74 (429)
T PRK14322 3 VKYFGTDGIRGVFGETLTDELAFKVGKALGEIVG----EG-KVIVGKDTRVSGDSLEAAISAGLTSMGVDVLLC---GIL 74 (429)
T ss_pred cceecCCCcceecCCCcCHHHHHHHHHHHhEEec----CC-cEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEe---cCc
Confidence 4689999999999999999999999999999885 23 499999999999999999999999999999999 999
Q ss_pred cchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCccc
Q 046205 96 STPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDI 175 (365)
Q Consensus 96 ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~ 175 (365)
|||+++|+++++ . ++|||||||||| ++||||||+ ++|.+++++.+++|++.+++ + ++++..
T Consensus 75 pTP~~~~av~~~------~-~gGI~ITaSHnP---~~~nGiK~~-~~G~~i~~~~~~~ie~~~~~-~------~~~~~~- 135 (429)
T PRK14322 75 PTPAVALLTRIT------R-SFGVVISASHNP---PEYNGIKVL-KGGYKIPDEMEVEIEERIES-G------YFPVRS- 135 (429)
T ss_pred CHHHHHHHHhcc------C-CceEEEECCCCC---hHhCCEEEe-cCCCcCCHHHHHHHHHHHhc-C------CCcccc-
Confidence 999999999987 6 899999999999 899999999 89999999999999888765 2 333321
Q ss_pred ccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeec
Q 046205 176 SAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLN 255 (365)
Q Consensus 176 ~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~ 255 (365)
.+|.+ ....+..+.|++++.+.++. ++ .+++|||+||+||+++.+++++ |++|||+++ .+|
T Consensus 136 -~~g~~----------~~~~~~~~~Y~~~l~~~v~~--~~----~~~~kVvvD~~nG~~~~~~~~l-l~~lg~~v~-~ln 196 (429)
T PRK14322 136 -VVGRT----------KSFREGRDMYIGAVLEMFRD--LD----LTGEMVSLDLANGATTTTAKEV-FEFLGAKVE-VFN 196 (429)
T ss_pred -CceeE----------EeccchHHHHHHHHHHhhcc--cc----cCCCEEEEECCCChHHHHHHHH-HHHcCCEEE-EEC
Confidence 23432 11236789999999987762 22 2689999999999999999999 799999987 499
Q ss_pred cccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCcc
Q 046205 256 CTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPY 334 (365)
Q Consensus 256 ~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~ 334 (365)
++||+.|+.. +|..+++.++.+.|+ ++|+|+++||||||++++| +|+++++++.++|++.++++..+
T Consensus 197 ~~~dg~~~~~--~~~~~~l~~l~~~v~---------~~dlGia~DgD~DR~~~vd~~G~~i~~d~~~~l~a~~l~~~~~- 264 (429)
T PRK14322 197 DSQDGLLINQ--GCGATHPRFLAEEMK---------NGKVGFTFDGDGDRVIAVDEERNVVNGDRIIGILAVGLKEEGR- 264 (429)
T ss_pred CcCCCCCCCC--CCCcCCHHHHHHHHH---------hcCEEEEEcCCCceEEEECCCCcEEChHHHHHHHHHHHHHhcC-
Confidence 9999999743 333467778888875 4699999999999999999 59999988888899999887421
Q ss_pred cccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 335 FSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 335 ~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
+ ++ ..||.|+.||.+++++|+++|+++++
T Consensus 265 ~-~~-~~vV~~v~ss~~l~~~a~~~g~~v~~ 293 (429)
T PRK14322 265 L-NS-DTVVGTVMTNGGLEDFLKERGIKLLR 293 (429)
T ss_pred C-CC-CeEEEeecCchHHHHHHHHcCCeEEE
Confidence 1 11 36999999999999999999999863
No 30
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2e-56 Score=447.87 Aligned_cols=287 Identities=20% Similarity=0.256 Sum_probs=240.6
Q ss_pred CcCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCccc
Q 046205 17 QKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLS 96 (365)
Q Consensus 17 ~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~p 96 (365)
.+|||+||||++|+++||+++.++|+|||++++ ++|+||||+|.+|++|++++++||+++|++|+++ |.+|
T Consensus 2 ~~Fgt~gIRG~~~~~ltpe~~~~lg~a~g~~~~------~~V~Vg~D~R~ss~~l~~a~~~gL~s~G~~V~d~---g~~p 72 (430)
T PRK14319 2 RLFGTDGIRGVVNEFLTPEIAFRLGNALGNMVD------KKIFIAKDTRASGDMLEAALVAGITSAGADVYRC---GVLP 72 (430)
T ss_pred cccCCCCcceecCCCcCHHHHHHHHHHHHhccC------CcEEEEeCCCCChHHHHHHHHHHHHHCCCeEEEe---CCcC
Confidence 479999999999999999999999999999874 3599999999999999999999999999999999 9999
Q ss_pred chHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCcccc
Q 046205 97 TPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDIS 176 (365)
Q Consensus 97 tP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ 176 (365)
||+++|+++.. +.+|||||||||| ++||||||+. +|.+++++.+++||+..+ ++++..++
T Consensus 73 TP~~~~~~~~~-------~~gGi~ItaSHnp---~~~ngiK~~~-~G~~i~~~~~~~ie~~~~---------~~~~~~~~ 132 (430)
T PRK14319 73 TPALALITKLE-------DAAGVMISASHNP---PEYNGLKVLM-RGYKLPDEVEERIEKEMN---------EIHYSPYN 132 (430)
T ss_pred cHHHHHHHhcc-------CceEEEEEeCCCC---hHHCCEEEec-CCCCCCHHHHHHHHHHHh---------ccCCcccc
Confidence 99999966554 4599999999999 8999999995 899999999999987633 23333334
Q ss_pred cccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeecc
Q 046205 177 AVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNC 256 (365)
Q Consensus 177 ~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~ 256 (365)
.+|.+ ....+..+.|++++.+.++. ++ .+++|||+||+||+++.+++++ |++|||+++ .+|+
T Consensus 133 ~~g~~----------~~~~~~~~~Y~~~l~~~~~~--~~----~~~~kvvvD~~nGa~~~~~~~l-l~~Lg~~v~-~ln~ 194 (430)
T PRK14319 133 EVGCV----------IDYKLAFEEYFNYIKQQYEG--LD----LSGIKIVVDVANGATYELNPYI-LEYFGAKVE-VVNN 194 (430)
T ss_pred cCeeE----------EeccchHHHHHHHHHHhcCc--cc----cCCCEEEEECCCChHHHHHHHH-HHHcCCEEE-EECC
Confidence 44532 12235689999999998762 22 2589999999999999999999 799999987 4999
Q ss_pred ccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCccc
Q 046205 257 TPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYF 335 (365)
Q Consensus 257 ~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~~ 335 (365)
+|||.|+...|.| +++.++.+.+. ++|+|+++||||||++++| +|+++++++.++|++.++++..+
T Consensus 195 ~~dg~~~~~~~~~--~~~~~l~~~v~---------~~dlGia~DgDaDR~~~vd~~G~~i~~d~~~~l~a~~ll~~~~-- 261 (430)
T PRK14319 195 TPDGFNINVDCGS--THPENAKEKIT---------NHKIAILHDGDGDRCIFLDEKGQEFHGDKIIGLTAKHLKKEGR-- 261 (430)
T ss_pred CCCCCCCCCCCCC--CCHHHHHHHHH---------hcCEEEEEcCCCceEEEECCCCCEeChhHHHHHHHHHHHHhCC--
Confidence 9999987544443 45666777664 3699999999999999999 58999988888888888886411
Q ss_pred ccCcceEEEeccchHHHHHHHHhcCCcee
Q 046205 336 SAGLKGVARSMPTSAALDVVAKNLNLKFF 364 (365)
Q Consensus 336 ~~~~~~vv~~v~ss~~i~~ia~~~g~~v~ 364 (365)
.+...||.|+.||.+++++|+++|++|+
T Consensus 262 -~~~~~vV~~v~ss~~~~~~~~~~g~~v~ 289 (430)
T PRK14319 262 -LKNDVVVGTILSNMGLEVFLKNNGIKVV 289 (430)
T ss_pred -CCCCeEEEeecCchHHHHHHHHCCCcEE
Confidence 1113599999999999999999999986
No 31
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=100.00 E-value=1.8e-53 Score=429.77 Aligned_cols=285 Identities=21% Similarity=0.213 Sum_probs=232.5
Q ss_pred cCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccc
Q 046205 18 KPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLST 97 (365)
Q Consensus 18 ~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~pt 97 (365)
+|||+||||++ .++||+++.++|+|||+++..+. .++.|+||||+|.+|++|+++++++|+++|++|+++ |.+||
T Consensus 1 ~Fgt~GiRG~~-~~ltpe~~~~l~~a~~~~l~~~~-~~~~VvVG~D~R~~s~~l~~a~~~gL~~~Gv~V~~~---g~~pT 75 (459)
T cd03088 1 KFGTSGLRGLV-TDLTDEVCYAYTRAFLQHLESKF-PGDTVAVGRDLRPSSPRIAAACAAALRDAGFRVVDC---GAVPT 75 (459)
T ss_pred CCCCcccceee-ccCCHHHHHHHHHHHHHHHHHhC-CCCeEEEEeCCCcchHHHHHHHHHHHHHCCCEEEEe---CCCCC
Confidence 59999999999 67999999999999999997421 246799999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCccccc
Q 046205 98 PAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISA 177 (365)
Q Consensus 98 P~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~ 177 (365)
|+++|+++++ ++ +|||||||||| ++||||||++++| ++.+..+++|++..+ ++++....+
T Consensus 76 P~~~~a~~~~------~~-ggI~ITaSHnp---~~~nGiK~~~~~G-~~~~~~e~~I~~~~~---------~~~~~~~~~ 135 (459)
T cd03088 76 PALALYAMKR------GA-PAIMVTGSHIP---ADRNGLKFYRPDG-EITKADEAAILAALV---------ELPEALFDP 135 (459)
T ss_pred HHHHHHHHHc------CC-cEEEEeCCCCC---CCCCCEEEECCCC-CCChHHHHHHHHHHH---------hhccccccc
Confidence 9999999998 76 89999999999 8999999999999 677777888877633 222322233
Q ss_pred ccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccc
Q 046205 178 VGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCT 257 (365)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~ 257 (365)
++. ......+..+.|++++.+.++...+ +++|||+||+||+++.+++++ |++|||+++. +++.
T Consensus 136 ~~~---------~~~~~~~~~~~Y~~~l~~~i~~~~~------~~lkIvvD~~~G~~~~~~~~l-l~~lG~~v~~-l~~~ 198 (459)
T cd03088 136 AGA---------LLPPDTDAADAYIARYTDFFGAGAL------KGLRIGVYQHSSVGRDLLVRI-LEALGAEVVP-LGRS 198 (459)
T ss_pred ccc---------CCcccchHHHHHHHHHHHHhCcccc------CCCEEEEECCCCCHHHHHHHH-HHHcCCeEEE-eCCC
Confidence 320 0122346789999999988874322 589999999999999999999 7999999874 7875
Q ss_pred cCCCCCCCCCCCCh-hcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCccc
Q 046205 258 PKEDFGGGHPDPNL-TYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYF 335 (365)
Q Consensus 258 ~d~~f~~~~p~p~~-~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~~ 335 (365)
+ .|+..+|+|.. +++.++.+.++ +.+||+|+++||||||++++| +|+++++++.++|++.++.
T Consensus 199 ~--~~~~~~~~~~~~~~l~~l~~~v~-------~~~adlGia~D~DgDR~~vvd~~G~~i~~d~l~~l~~~~~~------ 263 (459)
T cd03088 199 D--TFIPVDTEAVRPEDRALAAAWAA-------EHGLDAIVSTDGDGDRPLVADETGEWLRGDILGLLTARFLG------ 263 (459)
T ss_pred C--CCCCCCCCcCCHHHHHHHHHHHH-------hcCCCEEEEeCCCCCCceeECCCCCEECchHHHHHHHHHhC------
Confidence 5 45555666653 68889999998 889999999999999999999 5999995555555555542
Q ss_pred ccCcceEEEeccchHHHHHHHHhcCCcee
Q 046205 336 SAGLKGVARSMPTSAALDVVAKNLNLKFF 364 (365)
Q Consensus 336 ~~~~~~vv~~v~ss~~i~~ia~~~g~~v~ 364 (365)
. ..||.|+.||.++++++. +++++
T Consensus 264 -~--~~Vv~~v~ss~~i~~~~~--~~~~~ 287 (459)
T cd03088 264 -A--DTVVTPVSSNSAIELSGF--FKRVV 287 (459)
T ss_pred -C--CEEEEccCCcHHHHHcCC--ceeEE
Confidence 1 359999999999998875 35554
No 32
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-50 Score=397.02 Aligned_cols=328 Identities=22% Similarity=0.240 Sum_probs=255.0
Q ss_pred hhhhhhCCCCCCcCCCCCccccccc---ccchHHHHHHHHHHHHHhhhccc-CCCeEEEEecCCCChHHHHHHHHHHHHH
Q 046205 6 VTRKETAPIDGQKPGTSGLRKKVKV---FTQPNYLHNFVQSTFNALSAEKV-RGATLVVSGDGRYYSKDAIQIITKMAAA 81 (365)
Q Consensus 6 ~~~~~~~~~~~~~Fgt~GiRG~~~~---~~~~~~~~~l~~a~g~~l~~~~~-~~~~Vvvg~D~R~~s~~~~~a~a~gL~s 81 (365)
..+|..++-.|+.|||.|+||.+.. -+++-.+..+++.++.++.++.- ++.+|+||||.|++|+.|+++++++|..
T Consensus 49 ~~~L~~~~d~Ri~fgt~GlRg~m~agf~~mnel~~iq~~qg~a~yl~~~~~~~~~giviG~D~R~~S~~fA~l~a~vf~~ 128 (607)
T KOG1220|consen 49 WDALQKRLDTRIKFGTAGLRGEMRAGFSRMNELTAIQFGQGLAAYLKNQFPSKNLGIVIGHDGRYNSKRFAELVAAVFLL 128 (607)
T ss_pred HHHHHhhcccceeeeccccccccccCchhhhHHHHHHHHHHHHHHHHHhCCcccceEEEecCCccchHHHHHHHHHHHHh
Confidence 4578889999999999999999974 26666778889999999986542 2358999999999999999999999999
Q ss_pred cCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhh
Q 046205 82 NGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTI 161 (365)
Q Consensus 82 ~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~ 161 (365)
+|++|++++ .++|||++.|++..+ +|++|||||||||| +++||+|+|+++|.++-+...++|.+.+..-
T Consensus 129 ~g~~v~lf~--~~v~TP~vpfav~~l------~~dAgIMiTASHnP---k~dNGyKvYwsNG~qii~PhD~~I~~~~~~n 197 (607)
T KOG1220|consen 129 NGFKVYLFS--ELVPTPFVPFAVLTL------GADAGIMITASHNP---KEDNGYKVYWSNGAQIISPHDEKISDSIEAN 197 (607)
T ss_pred CCceEEEec--cccCCCcchhHHHHh------ccCceEEEeccCCc---cccCCEEEEecCCccccCchhHHHHHHHHhc
Confidence 999999992 399999999999999 99999999999999 8999999999999987666666776665541
Q ss_pred hhhhccCCCCCcc-cc--cccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHH
Q 046205 162 KEYSIAEDLPDVD-IS--AVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYA 238 (365)
Q Consensus 162 ~~~~~~~~~~~~~-~~--~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~ 238 (365)
. .|+.. |+ .+..... ..++ ..-....|.+.+.+.++- .-++.+...++++|++++||+++.++
T Consensus 198 l-------~p~~s~wd~slv~s~~l--~~d~----~~~~~~~~~e~~k~~l~~-~~~e~n~~s~~~fVyta~hGvG~~F~ 263 (607)
T KOG1220|consen 198 L-------EPRLSSWDDSLVKSHPL--LHDI----LAVIIPPYFEVYKELLPC-FHREANPLSGLKFVYTAGHGVGGFFV 263 (607)
T ss_pred c-------CcccchhhhhHHhcchh--hcCc----hhccchHHHHHHHhcCcc-HhhhhccCCCceEEEecCCCccHHHH
Confidence 1 12211 21 1111000 0000 112345677777776652 22444567899999999999999999
Q ss_pred HHHHHHHcCCce--eeeeccccCCCCCCC-CCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEeeC----
Q 046205 239 KRIFVEELGAQE--SSLLNCTPKEDFGGG-HPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILGK---- 311 (365)
Q Consensus 239 ~~i~l~~lg~~v--~~~~~~~~d~~f~~~-~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd~---- 311 (365)
..+ |+++|+.. ....+++|||.||+. .|||+++...++.... +.++++|+++++|||+||++++++
T Consensus 264 ~~a-l~~~~~~~~~~v~eq~~Pdp~FPt~~~PNPEek~aL~ls~~~------a~~n~~dlvlanDpDaDR~avaek~~G~ 336 (607)
T KOG1220|consen 264 KKA-LEKLGLDTMISVPEQLEPDPMFPTVPFPNPEEKGALDLSIKA------ALKNSADLVLANDPDADRFAVAEKVSGE 336 (607)
T ss_pred HHH-HHHhCCCccccchhhcCCCCCCCCCCCCCcchHHHHHHHHHH------HhccCCcEEEecCCCcchhhheeccCCc
Confidence 999 79999986 223899999999994 9999988666665432 237899999999999999999983
Q ss_pred CEEeCCCchHHHHHHHHHhcCcccccC-cceEEEeccchHHHHHHHHhcCCceeC
Q 046205 312 RFFVTPSDSVAIIAANAVESIPYFSAG-LKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 312 G~~l~~~~~lall~~~ll~~~~~~~~~-~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
|+.++.++..+|+.+|.++.++.-.+. ...|..+.+||.++..||+.+|++.+|
T Consensus 337 wr~fnGNElgALl~~~~le~~k~~~~~~~~~ml~s~vSs~l~~~ia~~eGf~~~~ 391 (607)
T KOG1220|consen 337 WRVFNGNELGALLSWWVLEEHKGSTPVQDVSMLNSTVSSGLTRFIAEIEGFHHEE 391 (607)
T ss_pred ceeccchHHHHHHHHHHHHhccCCCccchhhhhhhHHHHHHHHHHHHHhCceeee
Confidence 599998888889999999864311110 012478899999999999999998754
No 33
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-49 Score=372.43 Aligned_cols=346 Identities=68% Similarity=1.082 Sum_probs=312.7
Q ss_pred CcchhhhhhCCCCCCcCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHc
Q 046205 3 MFNVTRKETAPIDGQKPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAAN 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~ 82 (365)
+|-.+.+.+-..+..+-||+|+|-++.+|..|+++.++.+|+-.++.-...++...|||-|.|+.+....+.+++.-+++
T Consensus 2 ~~~i~tvpTkpyegQKpGTSGLRKkvkvF~qpnY~eNfvQa~~~a~~~~~~kgatLVVGGDGRyy~~~a~~~I~~iaAaN 81 (558)
T KOG0625|consen 2 SFKIETVPTKPYEGQKPGTSGLRKKVKVFKQPNYTENFVQAIMNALPGEKSKGATLVVGGDGRYYNKEAIQIIAKIAAAN 81 (558)
T ss_pred ceEEEeccCCccCCCCCCccchhhcceeecCCchHHHHHHHHHhccccccccCceEEEcCCCcchhHHHHHHHHHHHhhc
Confidence 45667788889999999999999999999999999999999999986444567889999999999999999999999999
Q ss_pred CCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhh
Q 046205 83 GVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIK 162 (365)
Q Consensus 83 G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~ 162 (365)
|+.-+.++++|+.+||++|..+|+.- .+.|||++||||||+||.++-||||+-++|+|..+..+++|.++..++.
T Consensus 82 Gv~rlivGqnGiLSTPAvS~iIRk~~-----ka~GGiILTASHnPGGP~~DfGIKfN~~NGgPAPesvTdkIy~itk~i~ 156 (558)
T KOG0625|consen 82 GVGRLIVGQNGILSTPAVSCIIRKYI-----KAGGGIILTASHNPGGPEGDFGIKFNLENGGPAPESVTDKIYEITKTIS 156 (558)
T ss_pred CcceEEeccCCcccchHHHHHHHhhc-----ccCceEEEEeccCCCCCCCccceEEecCCCCCChHHHHHHHHHhhhhhh
Confidence 99999999999999999999999961 5677899999999999999999999999999999999999999999888
Q ss_pred hhhccCCCCCcccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCC-CCceEEEecCCCCcHHHHHHH
Q 046205 163 EYSIAEDLPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSS-PKFTFCYDALHGVAGAYAKRI 241 (365)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~-~~~kvvvd~~~Ga~~~~~~~i 241 (365)
+|...+ ++..+...+|..++- +++.++..|..+.|++.+.+.+|++.|++++.. +++|+.+|+|||+++.+...|
T Consensus 157 eyki~~-~~~iDls~vG~~~~~---gpf~VeviDpv~~Yv~lmk~IFDF~~ik~lls~~~~~k~~~DamhGvtGpY~~~I 232 (558)
T KOG0625|consen 157 EYKIAK-DPKIDLSTVGKTSFD---GPFTVEVIDPVKDYVNLMKEIFDFDLIKSLLSGPKKLKFRFDAMHGVTGPYVKAI 232 (558)
T ss_pred hceeec-Ccccchhhhcccccc---CCeeEEEeccHHHHHHHHHHHhCHHHHHHHhcCCCCceEEEeecccccchhhhHH
Confidence 887663 677788888877652 677788889999999999999999999998654 789999999999999999999
Q ss_pred HHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCch
Q 046205 242 FVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDS 320 (365)
Q Consensus 242 ~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~ 320 (365)
|+++||+....+.||.|-|+|++.+|+|+.+.+++|.++|. ..+.|+|.++||||||-+++- +|-+++|.|.
T Consensus 233 fvdelGa~~~~~~n~~Pl~DFGG~HPDPNLTYAk~LV~rv~-------~~~~~fGAA~DGDGDRNMIlG~~~fFVtPsDS 305 (558)
T KOG0625|consen 233 FVDELGAPASSLQNCVPLEDFGGGHPDPNLTYAKDLVDRVD-------RGEIDFGAAFDGDGDRNMILGKNGFFVTPSDS 305 (558)
T ss_pred HHhhhCCChHHhccCeeccccCCCCCCCchhhHHHHHHHhc-------cCCCcccccccCCCcceeeeccCceeeccchh
Confidence 99999998754589999999999999999999999999998 788999999999999999987 5799999999
Q ss_pred HHHHHHHHHhcCcccc-cCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 321 VAIIAANAVESIPYFS-AGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 321 lall~~~ll~~~~~~~-~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
+|++++++. ..|+|. .|..+++.++.+|.++|++|++.|.+|+|
T Consensus 306 vAiIA~na~-~IPYF~~~Gv~GfARSmPTs~AlDrVak~~gl~~yE 350 (558)
T KOG0625|consen 306 VAIIAANAE-AIPYFRKQGVKGFARSMPTSGALDRVAKKLGLPVYE 350 (558)
T ss_pred HHHHHhcch-hcchhhhcCcchhhhcCCchhHHHHHHHHcCCceEE
Confidence 999998865 566664 34456999999999999999999999987
No 34
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-46 Score=358.87 Aligned_cols=333 Identities=35% Similarity=0.525 Sum_probs=270.7
Q ss_pred hhhhCCCCCCcCCCCCccccccccc-chHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEE
Q 046205 8 RKETAPIDGQKPGTSGLRKKVKVFT-QPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRR 86 (365)
Q Consensus 8 ~~~~~~~~~~~Fgt~GiRG~~~~~~-~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V 86 (365)
-..+..++...|||+|.||+.-++. +|+.+..+++|+..++.+++ .+++++||.|+|..|+..-+.++++|.++|+++
T Consensus 7 ~~~t~p~~~~k~GTSG~R~~~~~~~fne~~i~a~~Qai~d~~~~~~-~~~~L~vG~D~~~~se~a~~~~lev~aANgv~~ 85 (524)
T COG0033 7 PDPTNPYQDVKFGTSGHRGSALVFTFNENHILAFIQAIADYRAEGG-IGGPLVVGGDTHALSEPAIQSALEVLAANGVEV 85 (524)
T ss_pred CCCCChhhhcCCCCccccCccccCccCHHHHHHHHHHHHHHHhccC-CCCceEECCCcccccHHHHHHHHHHHHhcCceE
Confidence 3456677889999999999999876 88889999999999997554 567899999999999999999999999999999
Q ss_pred EEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhc
Q 046205 87 VWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSI 166 (365)
Q Consensus 87 ~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~ 166 (365)
+..+++|++|||.+|++++.+|. +.....+||+||+|||| |++.|||++.++|+|..++.++.|+++.+.......
T Consensus 86 iv~~~~g~~~TPAaSh~I~t~n~-k~k~~~~GIvlT~SHNP---P~D~GIKYN~~nGGPA~~~~T~aI~~ra~~~~k~~~ 161 (524)
T COG0033 86 IVQGQGGFTPTPAASHAILTHNG-KYKALADGIVLTPSHNP---PEDGGIKYNPPNGGPAPEKVTDAIEARANDLYKIGL 161 (524)
T ss_pred EEecCCCccCchHHHHHHHhhcc-cccccCCeEEEcCCCCC---cccCCcccCCCCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999995541 11123456999999999 799999999999999999999999999665221111
Q ss_pred cCCCCCcccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHc
Q 046205 167 AEDLPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEEL 246 (365)
Q Consensus 167 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~l 246 (365)
. ++.+...++ .+ ++..+...|....|++.|.+.+|+++||+ ...++++|+|+|++..++.+|| ++.
T Consensus 162 ~-~v~r~~~~~----~~----~~~~v~~~D~v~~Yv~~l~~i~D~daIr~----~~~~l~~D~l~g~t~~Y~~~I~-e~~ 227 (524)
T COG0033 162 L-DVKRIGLDQ----AY----GSLTVKIIDPVKDYVELLEEIFDFDAIRK----AGLRLGFDPLGGVTGPYWKAIA-EKY 227 (524)
T ss_pred c-Cccccchhh----hc----CcceeeeecchHHHHHHHHHhhcHHHHHH----HHhhcccccccCccchhHHHHH-HHh
Confidence 1 233222111 11 22335667999999999999999999998 4788999999999999999995 554
Q ss_pred CCcee-eeeccccCCCCCCCCCCCChhcHHH---HHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEeeCC-EEeCCCchH
Q 046205 247 GAQES-SLLNCTPKEDFGGGHPDPNLTYAKE---LVARMGLGKSNTQDEPPEFGAAADGDADRNMILGKR-FFVTPSDSV 321 (365)
Q Consensus 247 g~~v~-~~~~~~~d~~f~~~~p~p~~~~l~~---l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd~G-~~l~~~~~l 321 (365)
..... ...|++|.+.|.+..|+|......+ +...|- +.+.+.|+|.+.|+||||.+|+..| .+++|++.+
T Consensus 228 ~~~~t~v~~~~~p~~~F~~l~~D~ni~~~~ss~~~ma~l~-----~~~d~~d~~aanD~DgDR~~Iv~~~~~~~nPn~~l 302 (524)
T COG0033 228 LLNLTGVNQNVDPTPDFMGLDPDGNIRMDCSSPCAMAGLL-----RLRDKYDFAAANDGDGDRHGIVTPGAGLMNPNHSL 302 (524)
T ss_pred cCCchhhccCcccCccccCCCCCCCEeEecCcHHHHHHhh-----ccccccccccccCCCcccceeecCCCcccCchHHH
Confidence 44332 1378899999999999997542222 322222 1136799999999999999999986 999999999
Q ss_pred HHHHHHHHhcCcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 322 AIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 322 all~~~ll~~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
+++++|+..++++|. +..+|.+|++||.++|++++++|.+++|
T Consensus 303 Av~~~y~~~~~~~~~-g~~~v~ktl~sS~~iDRV~~~lGr~lyE 345 (524)
T COG0033 303 AVAIEYLFLHRPYWG-GIVAVGKTLVSSAAIDRVVAKLGRGLYE 345 (524)
T ss_pred HHHHHHHHhCCCccc-cceeeeeccccHHHHHHHHHHhCCceEE
Confidence 999999999888885 4578999999999999999999999987
No 35
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=6.4e-46 Score=363.55 Aligned_cols=242 Identities=33% Similarity=0.508 Sum_probs=209.4
Q ss_pred cCCCCCcccccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccc
Q 046205 18 KPGTSGLRKKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLST 97 (365)
Q Consensus 18 ~Fgt~GiRG~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~pt 97 (365)
+||++||||++|+++||+++.++|.|||+.
T Consensus 1 ~fg~~gi~G~~n~~itpe~~~~lg~a~g~~-------------------------------------------------- 30 (355)
T cd03084 1 IFGTSGVRGVVGDDITPETAVALGQAIGST-------------------------------------------------- 30 (355)
T ss_pred CCcccCcccccCCcCCHHHHHHHHHHHhcc--------------------------------------------------
Confidence 599999999999999999999999998853
Q ss_pred hHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCccccc
Q 046205 98 PAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISA 177 (365)
Q Consensus 98 P~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~ 177 (365)
+|||||||||| ++||||||++++|.+++++.+++||+.+++ + ++++....+
T Consensus 31 -------------------gGI~ITaSHnp---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~-~------~~~~~~~~~ 81 (355)
T cd03084 31 -------------------GGIMITASHNP---PEDNGIKFVDPDGEPIASEEEKAIEDLAEK-E------DEPSAVAYE 81 (355)
T ss_pred -------------------eeEEEEeCCCC---hhHCcEEEecCCCCcCCHHHHHHHHHHHhc-c------ccccccccc
Confidence 58999999999 899999999999999999999999998875 2 344332222
Q ss_pred ccccccCCCCCCccceeccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccc
Q 046205 178 VGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCT 257 (365)
Q Consensus 178 ~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~ 257 (365)
++.. ....+..+.|++++.+.+|.+.|++ +++||++||+||+++.+++++ |++|||+++ .+|+.
T Consensus 82 ~~~~----------~~~~~~~~~Y~~~l~~~i~~~~i~~----~~~kvvvD~~~G~~~~~~~~l-l~~lg~~v~-~~n~~ 145 (355)
T cd03084 82 LGGS----------VKAVDILQRYFEALKKLFDVAALSN----KKFKVVVDSVNGVGGPIAPQL-LEKLGAEVI-PLNCE 145 (355)
T ss_pred CCCe----------EEEcCCHHHHHHHHHHhcChhhhcc----CCCEEEEECCCchHHHHHHHH-HHHcCCcEE-EEcCc
Confidence 3321 2345789999999999999877764 699999999999999999999 799999987 49999
Q ss_pred cCCCCCCCCCCCC-hhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee-CCEEeCCCchHHHHHHHHHhcCccc
Q 046205 258 PKEDFGGGHPDPN-LTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG-KRFFVTPSDSVAIIAANAVESIPYF 335 (365)
Q Consensus 258 ~d~~f~~~~p~p~-~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd-~G~~l~~~~~lall~~~ll~~~~~~ 335 (365)
|||.||.+.|+|. .+++.++.+.|+ +.++|+|+++||||||+.++| +|+++++++.++|++.++++..
T Consensus 146 ~d~~F~~~~p~p~~~~~l~~l~~~v~-------~~~adlG~a~DgDgDRl~~vd~~G~~l~~d~~~al~~~~l~~~~--- 215 (355)
T cd03084 146 PDGNFGNINPDPGSETNLKQLLAVVK-------AEKADFGVAFDGDADRLIVVDENGGFLDGDELLALLAVELFLTF--- 215 (355)
T ss_pred CCCCCCCCCCCCCchhhHHHHHHHHH-------hcCCCEEEEEcCCCceeEEECCCCceeCHhHHHHHHHHHHHHhc---
Confidence 9999999999998 578999999998 889999999999999999999 5999998888889998888531
Q ss_pred ccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 336 SAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 336 ~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
.+ ...||+|+.||.+++++|+++|++|++
T Consensus 216 ~~-~~~vv~~v~ss~~i~~ia~~~g~~v~~ 244 (355)
T cd03084 216 NP-RGGVVKTVVSSGALDKVAKKLGIKVIR 244 (355)
T ss_pred CC-CCCEEEEccchHHHHHHHHHcCCcEEE
Confidence 12 246999999999999999999999863
No 36
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=100.00 E-value=7.5e-35 Score=247.94 Aligned_cols=132 Identities=34% Similarity=0.417 Sum_probs=117.9
Q ss_pred CCcCCCCCccccccc-ccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCc
Q 046205 16 GQKPGTSGLRKKVKV-FTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGL 94 (365)
Q Consensus 16 ~~~Fgt~GiRG~~~~-~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~ 94 (365)
+.+||++||||+++. ++||+++.++++++++++.++ ..+++|+||||+|++|++++++++++|+++|++|+++ |.
T Consensus 1 ~~~F~~~girG~~~~~~lt~~~~~~~~~a~~~~~~~~-~~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~---g~ 76 (137)
T PF02878_consen 1 RVLFGTSGIRGIINVGELTPEFAARLAQAFASYLKEK-GNGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDI---GL 76 (137)
T ss_dssp -CCBBTTSEEEECTHTTBSHHHHHHHHHHHHHHHHHT-TTSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEE---EE
T ss_pred CCccCCCCeeEEeCCCCCCHHHHHHHHHHHHHhhccc-CCCCeEEEEEcccCCHHHHHHHHHHHHhhcccccccc---cc
Confidence 468999999999995 599999999999999999864 2467899999999999999999999999999999999 89
Q ss_pred ccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhh
Q 046205 95 LSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKT 160 (365)
Q Consensus 95 ~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~ 160 (365)
+|||+++|+++++ ++++|||||||||| ++||||||++++|.+++++++++|++.+++
T Consensus 77 ~~tP~~~~~~~~~------~~~ggi~iTaShnp---~~~ngik~~~~~G~~~~~~~~~~I~~~~~~ 133 (137)
T PF02878_consen 77 VPTPALSFAIRQL------NADGGIMITASHNP---PGYNGIKFFDANGGPISPEEERKIEQIIER 133 (137)
T ss_dssp B-HHHHHHHHHHH------TESEEEEE--TTS----TTEEEEEEEETTSSB--HHHHHHHHHHHHH
T ss_pred cCcHHhhhhcccc------ccceeeEEEecCCC---CCcceEEEEeCCCCcCCHHHHHHHHHHHHh
Confidence 9999999999999 99999999999999 899999999999999999999999999887
No 37
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.97 E-value=6.6e-30 Score=259.84 Aligned_cols=214 Identities=16% Similarity=0.138 Sum_probs=167.1
Q ss_pred CCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCC
Q 046205 54 RGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNED 133 (365)
Q Consensus 54 ~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~ 133 (365)
++.+|+||||+|++|++|+++++++|.+.|++|+++ |.+|||+++|+++.+ ++.+ . ...
T Consensus 101 ~~~~V~vg~D~R~ss~~l~~a~~~gl~~~G~~V~d~---g~~~TP~~~~~v~~~------~~~g---------~---~~~ 159 (513)
T cd03086 101 VPANVFVGRDTRPSGPALLQALLDGLKALGGNVIDY---GLVTTPQLHYLVRAA------NTEG---------A---YGE 159 (513)
T ss_pred CCCEEEEEeCCChhHHHHHHHHHHHHHHCCCeEEEc---cCcCcHHHHHHHHhc------CCCC---------c---cCC
Confidence 456899999999999999999999999999999999 999999999999998 6654 2 100
Q ss_pred CeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCcccccccccccCCCCCCccceeccchHHHHHHHHhh----c
Q 046205 134 FGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSI----F 209 (365)
Q Consensus 134 nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~----~ 209 (365)
.. .+.|++++... +
T Consensus 160 ------------~~--------------------------------------------------~~~Y~~~l~~~f~~lv 177 (513)
T cd03086 160 ------------PT--------------------------------------------------EEGYYEKLSKAFNELY 177 (513)
T ss_pred ------------cc--------------------------------------------------HHHHHHHHHHHHHHHH
Confidence 00 11133333332 2
Q ss_pred C-HHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcC--CceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCC
Q 046205 210 D-FELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELG--AQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKS 286 (365)
Q Consensus 210 ~-~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg--~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~ 286 (365)
+ .+.|+ .+++||||||+||+++.+++++ |++|| |++. .+|++||+.| ..+++|..+++.++.+.++
T Consensus 178 ~~~~~~~----~~~~kVvvD~aNGag~~~~~~l-l~~Lg~~~~v~-~in~~~dg~~-~~n~~~ga~~l~~l~~~v~---- 246 (513)
T cd03086 178 NLLQDGG----DEPEKLVVDCANGVGALKLKEL-LKRLKKGLSVK-IINDGEEGPE-LLNDGCGADYVKTKQKPPR---- 246 (513)
T ss_pred hhccccc----cCCCEEEEECCCcHHHHHHHHH-HHHcCCCcEEE-EEccCCCCcc-cCCCCcccccHHHHHHHHH----
Confidence 2 22233 3689999999999999999999 79999 9987 5999999986 3566666778888877776
Q ss_pred CCCCCC----CeEEEeeCCCCCeeeEee-CC----EEeCCCchHHHHHHHHHhcCccccc-C--cceEEEeccchHHHHH
Q 046205 287 NTQDEP----PEFGAAADGDADRNMILG-KR----FFVTPSDSVAIIAANAVESIPYFSA-G--LKGVARSMPTSAALDV 354 (365)
Q Consensus 287 ~a~~~~----adlgi~~D~DgDR~~~vd-~G----~~l~~~~~lall~~~ll~~~~~~~~-~--~~~vv~~v~ss~~i~~ 354 (365)
..+ +|+|+++||||||++++| +| ++++++++++|++.|+++..+...+ + +..||.|+.|+..+.+
T Consensus 247 ---~~~~~~~adlgiA~DGDADRl~~vd~~g~~~~~~l~GD~i~aL~a~~ll~~~~~~~~~~~~~~~VV~tv~sn~~~~~ 323 (513)
T cd03086 247 ---GFELKPPGVRCCSFDGDADRLVYFYPDSSNKFHLLDGDKIATLFAKFIKELLKKAGEELKLTIGVVQTAYANGASTK 323 (513)
T ss_pred ---hcCCCCCccEEEEECCCCCcEEEEEecCCCceEEECHHHHHHHHHHHHHHhccccCCCCCCCcEEEEEeccchHHHH
Confidence 333 999999999999999998 57 9999888888888888864211001 1 1269999999999998
Q ss_pred HHHh-cCCcee
Q 046205 355 VAKN-LNLKFF 364 (365)
Q Consensus 355 ia~~-~g~~v~ 364 (365)
+.++ +|++++
T Consensus 324 ~l~~~~G~~~~ 334 (513)
T cd03086 324 YLEDVLKVPVV 334 (513)
T ss_pred HHHHHcCceEE
Confidence 8888 898875
No 38
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=99.93 E-value=3.9e-24 Score=219.04 Aligned_cols=225 Identities=18% Similarity=0.128 Sum_probs=159.0
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHH-HcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCC
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAA-ANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNED 133 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~-s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~ 133 (365)
...|+||||+|++|++|++++++||. +.|++|+++ |++|||+++|+++.. +. .|. +
T Consensus 152 ~~~V~vGrDtR~Ss~~L~~al~~gl~~~~G~~v~d~---G~~tTP~l~y~v~~~------n~-~~~------------~- 208 (585)
T PTZ00302 152 KAKVHVGRDTRPSSPELVSALLRGLKLLIGSNVRNF---GIVTTPQLHFLVAFA------NG-LGV------------D- 208 (585)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHhcCCcEEEe---CCCCcHHHHHHHHHh------CC-Ccc------------c-
Confidence 35699999999999999999999999 999999999 999999999999887 32 110 1
Q ss_pred CeEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCcccccccccccCCCCCCccceeccchHHHHHHHHhhcCHHH
Q 046205 134 FGIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEL 213 (365)
Q Consensus 134 nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~ 213 (365)
-|.+-.+.--+++...|.++-+. . ...+. . .. .
T Consensus 209 --------~~~~~e~~Y~~~~~~~f~~l~~~------~----~~~~~-----------~---~~-----------~---- 241 (585)
T PTZ00302 209 --------VVESSDELYYAYLLAAFKELYRT------L----QEGGP-----------V---DL-----------T---- 241 (585)
T ss_pred --------cCCCcHHHHHHHHHHHHHHHHhh------C----Ccccc-----------c---cc-----------c----
Confidence 12221111122333333221100 0 00000 0 00 0
Q ss_pred HHhhcCCCCceEEEecCCCCcHHHHHHHHHHHc---CCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCC
Q 046205 214 IRKLLSSPKFTFCYDALHGVAGAYAKRIFVEEL---GAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQD 290 (365)
Q Consensus 214 i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~l---g~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~ 290 (365)
+ ...-+|+|||+||+++..++++ ++.| ||+++ ++|+++|+.|. .+.+|..+++..+.+.++ .
T Consensus 242 -~----~~~~kVvVD~ANGvg~~~~~~l-l~~L~~~g~~v~-~in~~~dg~~~-lN~~cGad~vk~lq~~p~-------~ 306 (585)
T PTZ00302 242 -Q----NNSKILVVDCANGVGGYKIKRF-FEALKQLGIEII-PININCDEEEL-LNDKCGADYVQKTRKPPR-------A 306 (585)
T ss_pred -c----cCCCeEEEECCCcHHHHHHHHH-HHHhhhCCCEEE-EEecCCCCCCC-CCCCCccccHHHHHHHHH-------h
Confidence 0 1236899999999999999999 7999 88887 59999998762 334444678899999887 6
Q ss_pred CCCeEE------EeeCCCCCeeeEeeC---C----EEeCCCchHHHHHHHHHhcCcccccC---cceEEEeccchHHHHH
Q 046205 291 EPPEFG------AAADGDADRNMILGK---R----FFVTPSDSVAIIAANAVESIPYFSAG---LKGVARSMPTSAALDV 354 (365)
Q Consensus 291 ~~adlg------i~~D~DgDR~~~vd~---G----~~l~~~~~lall~~~ll~~~~~~~~~---~~~vv~~v~ss~~i~~ 354 (365)
.++|+| ++|||||||++++++ | ++++++.+++|++.++.+.......+ .-+||.|+.|+.++++
T Consensus 307 ~~ad~G~~~~~~~sfDGDADRlv~~d~~~~g~~~~~lldGDkI~~L~A~~l~~~l~~~~~~~~l~igVVqTayaNgast~ 386 (585)
T PTZ00302 307 MKEWPGDEETRVASFDGDADRLVYFFPDKDGDDKWVLLDGDRIAILYAMLIKKLLGKIQLKKKLDIGVVQTAYANGASTN 386 (585)
T ss_pred cCCCcCccCCeeEEECCCCCeEEEEEecCCCCccceecCHHHHHHHHHHHHHHHhhhcCCCCCccceEEEeccCCHHHHH
Confidence 778998 999999999999974 7 89996666667777776521111111 0169999999999999
Q ss_pred HHHh-cC-Ccee
Q 046205 355 VAKN-LN-LKFF 364 (365)
Q Consensus 355 ia~~-~g-~~v~ 364 (365)
++++ .| ++|+
T Consensus 387 yl~~~lg~~~v~ 398 (585)
T PTZ00302 387 YLNELLGRLRVY 398 (585)
T ss_pred HHHHhcCCeeEE
Confidence 9999 88 7764
No 39
>PLN02895 phosphoacetylglucosamine mutase
Probab=99.92 E-value=4.3e-24 Score=217.34 Aligned_cols=215 Identities=17% Similarity=0.187 Sum_probs=155.3
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCC
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDF 134 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~n 134 (365)
...|+||||+|++|+.|+++++.||.+.|++|+++ |++|||+++|+++.. +. + +.| .+
T Consensus 127 ~~~V~vG~DtR~Ss~~l~~a~~~gl~~~G~~v~d~---G~~tTP~l~~~v~~~------n~-~-------~~~---~e-- 184 (562)
T PLN02895 127 PAEVLLGRDTRPSGPALLAAALKGVRAIGARAVDM---GILTTPQLHWMVRAA------NK-G-------MKA---TE-- 184 (562)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHHCCCCEEEe---CcCCcHHHHHHHHhc------CC-C-------CCC---cH--
Confidence 45799999999999999999999999999999999 999999999999887 22 1 011 00
Q ss_pred eEEEEcCCCCCCChhhHHHHHHHhhhhhhhhccCCCCCcccccccccccCCCCCCccceeccchHHHHHHHHhhcCH-HH
Q 046205 135 GIKYNMDNGGPAPEGITDKIYENTKTIKEYSIAEDLPDVDISAVGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDF-EL 213 (365)
Q Consensus 135 GiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~-~~ 213 (365)
..--+++.+.|.++ .+.... ..
T Consensus 185 -------------~~Y~~~l~~~f~~l--------------------------------------------~~~~~~~~~ 207 (562)
T PLN02895 185 -------------SDYFEQLSSSFRAL--------------------------------------------LDLIPNGSG 207 (562)
T ss_pred -------------HHHHHHHHHHHHHH--------------------------------------------HhcCCCccc
Confidence 00112222222221 100000 00
Q ss_pred HHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCC-hhcHHHHHHHhcCCCCCCCCCC
Q 046205 214 IRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPN-LTYAKELVARMGLGKSNTQDEP 292 (365)
Q Consensus 214 i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~-~~~l~~l~~~v~~~~~~a~~~~ 292 (365)
+. +...||+|||.||+++..++++ ++.||+.++.++|+.||+.| ..|+|- .+++..+. .+. + +
T Consensus 208 ~~----~~~~kvvVDcANGvg~~~~~~l-~~~Lg~~~i~~iN~~~dG~~--~lN~~cGad~v~~lq-~vp-------~-~ 271 (562)
T PLN02895 208 DD----RADDKLVVDGANGVGAEKLETL-KKALGGLDLEVRNSGKEGEG--VLNEGVGADFVQKEK-VPP-------T-G 271 (562)
T ss_pred cc----cCCCEEEEECCCcHHHHHHHHH-HHHCCCcEEEEeecCCCCCC--CCCCCCccCcHHHHH-hhh-------c-c
Confidence 00 1357999999999999999999 79999988745999999887 445554 45777777 665 4 5
Q ss_pred C---eEE---EeeCCCCCeeeEee-CC-----EEeCCCchHHHHHHHHHhcCcccc------c---C-cceEEEeccchH
Q 046205 293 P---EFG---AAADGDADRNMILG-KR-----FFVTPSDSVAIIAANAVESIPYFS------A---G-LKGVARSMPTSA 350 (365)
Q Consensus 293 a---dlg---i~~D~DgDR~~~vd-~G-----~~l~~~~~lall~~~ll~~~~~~~------~---~-~~~vv~~v~ss~ 350 (365)
+ |+| ++|||||||+++++ +| ++++++.+++|++.++.+..+... + . ...||.|+.|+.
T Consensus 272 ~~~~d~G~~~~sfDGDADRlv~~d~~g~~~~~~llDGDkI~~L~A~~l~~~l~~~~~~~~~~~~~~~l~~gVVqTayaNg 351 (562)
T PLN02895 272 FASKDVGLRCASLDGDADRLVYFYVSSAGSKIDLLDGDKIASLFALFIKEQLRILNGNGNEKPEELLVRLGVVQTAYANG 351 (562)
T ss_pred CCccCCCCcceEEcCCCCEEEEEEcCCCcccCeEeCHHHHHHHHHHHHHHHhhhcccccccccccccCCCeEEEeccccH
Confidence 6 889 99999999999998 46 899955555566677765421110 0 0 136999999999
Q ss_pred HHHHHHHh-cCCcee
Q 046205 351 ALDVVAKN-LNLKFF 364 (365)
Q Consensus 351 ~i~~ia~~-~g~~v~ 364 (365)
.+++++++ +|++|+
T Consensus 352 ast~yl~~~lg~~v~ 366 (562)
T PLN02895 352 ASTAYLKQVLGLEVV 366 (562)
T ss_pred HHHHHHHHhcCCeEE
Confidence 99999999 999875
No 40
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=99.87 E-value=1.4e-21 Score=158.43 Aligned_cols=100 Identities=29% Similarity=0.550 Sum_probs=89.8
Q ss_pred HHHHHHHHhhcC-HHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccccCCCCCC-CCCCCChhcHHH
Q 046205 199 SDYVKLMKSIFD-FELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGG-GHPDPNLTYAKE 276 (365)
Q Consensus 199 ~~Y~~~l~~~~~-~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~-~~p~p~~~~l~~ 276 (365)
+.|+++|.+.++ .+.+++ +++||+|||+||+++.+++.+ +++|||+++. +|+.+|+.|+. ..|+|..+.+..
T Consensus 1 e~Y~~~l~~~~~~~~~~~~----~~~kivvD~~~G~~~~~~~~l-l~~lg~~~~~-~n~~~d~~f~~~~~p~p~~~~l~~ 74 (104)
T PF02879_consen 1 EAYIESLLSFIDILEAIKK----SGLKIVVDCMNGAGSDILPRL-LERLGCDVIE-LNCDPDPDFPNQHAPNPEEESLQR 74 (104)
T ss_dssp HHHHHHHHHTSCHHHHHHH----TTCEEEEE-TTSTTHHHHHHH-HHHTTCEEEE-ESSS-STTGTTTSTSSTSTTTTHH
T ss_pred ChHHHHHhhhccchhhccc----CCCEEEEECCCCHHHHHHHHH-HHHcCCcEEE-EecccccccccccccccccchhHH
Confidence 579999999999 777776 789999999999999999999 7999999874 99999999999 899998888999
Q ss_pred HHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEeeC
Q 046205 277 LVARMGLGKSNTQDEPPEFGAAADGDADRNMILGK 311 (365)
Q Consensus 277 l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd~ 311 (365)
+.+.++ +.++|+|+++||||||++++|+
T Consensus 75 ~~~~v~-------~~~ad~g~~~DgDaDRl~~vd~ 102 (104)
T PF02879_consen 75 LIKIVR-------ESGADLGIAFDGDADRLGVVDE 102 (104)
T ss_dssp HHHHHH-------HSTTSEEEEE-TTSSBEEEEET
T ss_pred HHHHhh-------ccCceEEEEECCcCceeEEECC
Confidence 999998 8899999999999999999984
No 41
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=1.2e-08 Score=100.74 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=47.5
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhh
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERV 108 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~ 108 (365)
..+|++|+|+|++|+.+.+++..++......+.++ |+++||.+.|.++..|
T Consensus 124 ~~~v~~G~DtR~s~~~L~~~~~~~~~~l~a~~~d~---GvvtTPqLHy~v~~~n 174 (539)
T KOG2537|consen 124 SAHVVVGRDTRPSSPRLLNAVRDGVGALFAQVDDY---GVVTTPQLHYMVRASN 174 (539)
T ss_pred cceEEEecCCCCccHHHHHHHHHHHHhhheEecce---EEEcchhhhhhhhhcc
Confidence 45799999999999999999999998888999999 9999999999999873
No 42
>PLN02895 phosphoacetylglucosamine mutase
Probab=98.58 E-value=1.3e-07 Score=97.18 Aligned_cols=63 Identities=25% Similarity=0.300 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhH
Q 046205 72 IQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGIT 151 (365)
Q Consensus 72 ~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~ 151 (365)
-++.+..|.+.|++|..+ ....|| ++ ++.+|||||||||| ++|||+|+++++|.++.++++
T Consensus 31 FR~~a~~l~~~~~r~~~~--~~~r~~--------~~------~~~~gVmITaSHnp---~~~nG~K~~~~~G~~~~~~~e 91 (562)
T PLN02895 31 FRTDASLLESTVFRVGIL--AALRSL--------KT------GAATGLMITASHNP---VSDNGVKIVDPSGGMLPQAWE 91 (562)
T ss_pred hHHHHHHHHhcCeEEEEe--CCCCcc--------cc------CCCcEEEEeCCCCC---cccCcEEEECCCCCcCCHHHH
Confidence 456788999999999999 255555 55 68899999999999 899999999999999998764
Q ss_pred HH
Q 046205 152 DK 153 (365)
Q Consensus 152 ~~ 153 (365)
+.
T Consensus 92 ~~ 93 (562)
T PLN02895 92 PF 93 (562)
T ss_pred HH
Confidence 33
No 43
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=98.46 E-value=1.5e-07 Score=97.46 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=39.9
Q ss_pred cceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhhh
Q 046205 115 ATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKT 160 (365)
Q Consensus 115 ~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~ 160 (365)
+.+|||||||||| ++|||+|+++++|+++.+++++.|++.++.
T Consensus 75 ~~~GImiTASHNp---~~~NG~K~~~~~G~~l~~~~~~~i~~~~n~ 117 (585)
T PTZ00302 75 KSVGVMITASHNP---IQDNGVKIIDPDGGMLEESWEKICTDFANA 117 (585)
T ss_pred cceeEEEeCCCCC---cccCCEEEECCCCCcCCCcHHHHHHHHHhc
Confidence 6789999999999 899999999999999999999999888654
No 44
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=98.46 E-value=1.4e-06 Score=89.46 Aligned_cols=41 Identities=32% Similarity=0.313 Sum_probs=36.3
Q ss_pred ceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHHHhh
Q 046205 116 TGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTK 159 (365)
Q Consensus 116 ~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~ 159 (365)
.+|||||||||| ++|||||+..++|.+++++.++.++...+
T Consensus 36 ~~gimITaSHNP---~~~NGiK~~~~~g~~~~~~~~~~~~~~~~ 76 (513)
T cd03086 36 TIGVMITASHNP---VEDNGVKIVDPDGEMLEESWEPYATQLAN 76 (513)
T ss_pred ceEEEECCCcCC---cccCeEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 589999999999 89999999999999999887777766543
No 45
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.00092 Score=66.79 Aligned_cols=156 Identities=16% Similarity=0.147 Sum_probs=80.3
Q ss_pred hHHHHHHHHhhcCHH-HHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcC--CceeeeeccccCCCCCCCCCCCChhcH
Q 046205 198 ASDYVKLMKSIFDFE-LIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELG--AQESSLLNCTPKEDFGGGHPDPNLTYA 274 (365)
Q Consensus 198 ~~~Y~~~l~~~~~~~-~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg--~~v~~~~~~~~d~~f~~~~p~p~~~~l 274 (365)
.+.|++.+.+.+... .++........|+.|||.||+|..-++.+ ..-.. .++. ++|...||.-- +-.|-.
T Consensus 186 ~~~Y~~~ls~af~~l~~~~~~~~~~~~k~~VD~ANGvG~~klk~l-~~i~~~~l~vE-ivNd~~dpelL--N~~CGA--- 258 (539)
T KOG2537|consen 186 EEGYYSKLSKAFNELRNITQESGDEVSKLIVDCANGVGAPKLKEL-LGIDSGLLNVE-VVNDGIDPGLL--NNGCGA--- 258 (539)
T ss_pred cccHHHHHHHHHHHhhhhccccCCccceEEEECccccchHHHHHH-hccCCCcCceE-EEcCCCChhhh--cccccc---
Confidence 466888887766532 22221122345999999999999888777 43211 2333 46665552110 111211
Q ss_pred HHHHHHhcCCCCCC--CCCCCeEEEeeCCCCCeeeEee---CC--EEeCCCchHHH-HHHHHHhcCcccccC-cceEEEe
Q 046205 275 KELVARMGLGKSNT--QDEPPEFGAAADGDADRNMILG---KR--FFVTPSDSVAI-IAANAVESIPYFSAG-LKGVARS 345 (365)
Q Consensus 275 ~~l~~~v~~~~~~a--~~~~adlgi~~D~DgDR~~~vd---~G--~~l~~~~~lal-l~~~ll~~~~~~~~~-~~~vv~~ 345 (365)
+..+.-+ .-|.+ ....-.....||||+||++.+. ++ ++++ +|.++. ++.|+-+.......+ ..+||.|
T Consensus 259 -DFVkt~Q-kpP~~~~~~~~~~~caSfDGDADRlvyf~~~~~~~f~llD-GDkistlla~~l~~ll~~~~~~l~~GvVqt 335 (539)
T KOG2537|consen 259 -DFVKTKQ-KPPKGLSPIKANTRCASFDGDADRLVYFYIDDDSEFHLLD-GDKIATLIAGYLRELLKQIELSLRLGVVQT 335 (539)
T ss_pred -chhhccc-cCCCCCCCCCCCCceeeeecccceeEEEEecCCceeEeec-chHHHHHHHHHHHHHHHHhhccceeeeEEE
Confidence 1111111 00000 0111236889999999997774 34 7888 666664 444543321111111 2358888
Q ss_pred ccchH-HHHHHHHhcCCce
Q 046205 346 MPTSA-ALDVVAKNLNLKF 363 (365)
Q Consensus 346 v~ss~-~i~~ia~~~g~~v 363 (365)
..|.. .++.+-...+++|
T Consensus 336 aYaNgast~yl~~~l~~~v 354 (539)
T KOG2537|consen 336 AYANGASTDYLKETLKFPV 354 (539)
T ss_pred EeecCccHhhhhhhcCCce
Confidence 65443 3344444466665
No 46
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=96.66 E-value=0.0014 Score=53.68 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=34.2
Q ss_pred CCchHHHHHHHHHhcCcccccCcceEEEeccchHHHHHHHHhcCCceeC
Q 046205 317 PSDSVAIIAANAVESIPYFSAGLKGVARSMPTSAALDVVAKNLNLKFFE 365 (365)
Q Consensus 317 ~~~~lall~~~ll~~~~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~e 365 (365)
+++.++|++.++++.+ .++ ..||.|++||++++++|+++|+++++
T Consensus 2 gd~~~al~a~~~l~~~---~~~-~~vv~~v~sS~~~~~~~~~~g~~~~~ 46 (113)
T PF02880_consen 2 GDELLALLADYLLEEH---KPG-GTVVVTVVSSRALDKIAEKHGGKVIR 46 (113)
T ss_dssp HHHHHHHHHHHHHHCH---TTT-EEEEEETTS-THHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhC---CCC-CEEEEeCHHHHHHHHHHHHCCCEEEE
Confidence 3556678888888741 222 36999999999999999999999864
No 47
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=85.60 E-value=4.8 Score=34.56 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=29.8
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCC
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQ 91 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~ 91 (365)
+|+||.|. .+..+|+.+..-|.+.|++|.|++.
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~ 34 (148)
T PRK05571 2 KIAIGSDH--AGFELKEEIIEHLEELGHEVIDLGP 34 (148)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEcCC
Confidence 58999996 6899999999999999999999943
No 48
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=83.77 E-value=5.5 Score=33.92 Aligned_cols=43 Identities=7% Similarity=0.172 Sum_probs=34.0
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccc--hHHHHHH
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLST--PAVSAVI 104 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~pt--P~~~~av 104 (365)
+|+||.|. .+-.+|+.+..-|.+.|++|.|+ |..++ |-+...+
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~---G~~~~dypd~a~~v 46 (141)
T PRK12613 2 AIILGADA--HGNALKELIKSFLQEEGYDIIDV---TDINSDFIDNTLAV 46 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEc---CCCCCChHHHHHHH
Confidence 58999996 68999999999999999999999 54344 4444433
No 49
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=83.28 E-value=5.9 Score=33.69 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=29.9
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCccc
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLS 96 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~p 96 (365)
+|+||.|. ++..+++.+.+-|.+.|++|.|+ |...
T Consensus 1 KI~igsDh--~g~~lK~~i~~~L~~~g~eV~D~---G~~~ 35 (140)
T PF02502_consen 1 KIAIGSDH--AGFELKEAIKEYLEEKGYEVIDF---GTYS 35 (140)
T ss_dssp EEEEEE-G--GGHHHHHHHHHHHHHTTEEEEEE---SESS
T ss_pred CEEEEeCH--HHHHHHHHHHHHHHHCCCEEEEe---CCCC
Confidence 58999996 68899999999999999999999 5544
No 50
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=82.89 E-value=7.6 Score=33.07 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=34.5
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHH
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVI 104 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av 104 (365)
+|+||.|. .+..+|+.+.+-|.+.|++|.|++....+--|-+.+.+
T Consensus 2 kI~IgsDh--~G~~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~v 47 (141)
T TIGR01118 2 AIIIGSDL--AGKRLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAV 47 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHH
Confidence 58999996 68999999999999999999999421123335544444
No 51
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=82.28 E-value=8.2 Score=32.91 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=36.0
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHH
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRE 106 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~ 106 (365)
+|+||.|. .+..+|+.+.+-|.+.|++|.|++.+..+.-|-+.+.+-+
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~ 49 (142)
T PRK08621 2 AIIIGADK--AGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAK 49 (142)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHH
Confidence 58999996 6889999999999999999999943222344555554433
No 52
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=82.17 E-value=7.9 Score=33.04 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=29.0
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeC
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIG 90 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~ 90 (365)
+|+||.|. .+..+|+.+.+-|.+.|++|.|++
T Consensus 1 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G 32 (143)
T TIGR01120 1 KIAIGSDH--AGFILKEEIKAFLVERGVKVIDKG 32 (143)
T ss_pred CEEEEeCc--chHHHHHHHHHHHHHCCCEEEEeC
Confidence 48899996 689999999999999999999994
No 53
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=81.65 E-value=8.2 Score=38.37 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhhcccCCCeEEEEec-CCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcc
Q 046205 38 HNFVQSTFNALSAEKVRGATLVVSGD-GRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKAT 116 (365)
Q Consensus 38 ~~l~~a~g~~l~~~~~~~~~Vvvg~D-~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~ 116 (365)
.++..+|-.|...+ +.++|+|-+| ...+.+.++++++++|++.|++|... ..... -.+.-++.. ..+
T Consensus 231 ~~i~~~Y~~W~~~~--~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~---~~~~~-~~~eI~~~i------~~a 298 (388)
T COG0426 231 KEIVEAYRDWAEGQ--PKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVI---NLEDA-DPSEIVEEI------LDA 298 (388)
T ss_pred HHHHHHHHHHHccC--CcceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEE---EcccC-CHHHHHHHH------hhc
Confidence 45667777776532 3337888888 66788999999999999999998776 22222 556656665 455
Q ss_pred eeEEEeC
Q 046205 117 GAFILTA 123 (365)
Q Consensus 117 gGI~ITa 123 (365)
.|++|-+
T Consensus 299 ~~~vvGs 305 (388)
T COG0426 299 KGLVVGS 305 (388)
T ss_pred ceEEEec
Confidence 6788754
No 54
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=81.20 E-value=9 Score=33.03 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=30.3
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHH--cCCEEEEeCC
Q 046205 56 ATLVVSGDGRYYSKDAIQIITKMAAA--NGVRRVWIGQ 91 (365)
Q Consensus 56 ~~Vvvg~D~R~~s~~~~~a~a~gL~s--~G~~V~~~~~ 91 (365)
.+|+||.|. .+..+|+.+..-|.+ .|++|.|++.
T Consensus 3 mkI~igsDh--aG~~lK~~l~~~L~~~~~g~eV~D~G~ 38 (151)
T PTZ00215 3 KKVAIGSDH--AGFDLKNEIIDYIKNKGKEYKIEDMGT 38 (151)
T ss_pred cEEEEEeCC--chHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 369999997 688999999999999 9999999943
No 55
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=80.64 E-value=9.8 Score=33.48 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=29.3
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeC
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIG 90 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~ 90 (365)
+|+||.|. .+..+|+.+.+-|.+.|++|.|++
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G 33 (171)
T TIGR01119 2 KIAIGCDH--IVTDVKMEVSEFLKSKGYEVLDVG 33 (171)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEeC
Confidence 58999996 689999999999999999999994
No 56
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=77.68 E-value=13 Score=32.67 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=29.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeC
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIG 90 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~ 90 (365)
+|+||.|. .+-.+|+.+.+-|.+.|++|.|++
T Consensus 2 kI~IgsDh--aG~~lK~~l~~~L~~~G~eV~D~G 33 (171)
T PRK08622 2 KIAIGCDH--IVTDEKMAVSDYLKSKGHEVIDVG 33 (171)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcC
Confidence 58999996 578999999999999999999994
No 57
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=77.27 E-value=14 Score=31.78 Aligned_cols=32 Identities=16% Similarity=0.030 Sum_probs=29.1
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeC
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIG 90 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~ 90 (365)
+|+||+|. .+-.+|+.+..-|.+.|++|.|++
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G 33 (148)
T TIGR02133 2 RVVLGHDH--AGFEYKEALWLDLAAHEPEVCDVG 33 (148)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEECC
Confidence 58899996 688999999999999999999994
No 58
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=76.73 E-value=6 Score=33.81 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=27.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHHHcCCEEEEeC
Q 046205 58 LVVSGDGRYYSKDAIQIITKMAAANGVRRVWIG 90 (365)
Q Consensus 58 Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~ 90 (365)
|+||.|. .+..+|+.+..-|.+.|++|.|++
T Consensus 1 I~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G 31 (144)
T TIGR00689 1 IAIGSDH--AGLELKSEIIEHLKQKGHEVIDCG 31 (144)
T ss_pred CEEeeCc--chHHHHHHHHHHHHHCCCEEEEcC
Confidence 5688886 588999999999999999999993
No 59
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=76.41 E-value=14 Score=32.49 Aligned_cols=32 Identities=9% Similarity=0.191 Sum_probs=29.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeC
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIG 90 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~ 90 (365)
+|+||.|. .+..+|+.+.+-|.+.|++|.|++
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G 33 (171)
T PRK12615 2 KIAIGCDH--IVTNEKMAVSDFLKSKGYDVIDCG 33 (171)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEcC
Confidence 58999996 688999999999999999999994
No 60
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=75.92 E-value=10 Score=32.58 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=28.8
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEe
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
+|+||+|. ++..+++.+..-|.+.|++|+|+
T Consensus 2 kIaig~Dh--ag~~lK~~I~~~Lk~~g~~v~D~ 32 (151)
T COG0698 2 KIAIGSDH--AGYELKEIIIDHLKSKGYEVIDF 32 (151)
T ss_pred cEEEEcCc--ccHHHHHHHHHHHHHCCCEEEec
Confidence 58999997 68899999999999999999998
No 61
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=70.58 E-value=30 Score=29.18 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=32.9
Q ss_pred CCeEEEEe---cCCCChHHHHHHHHHHHHHcCCEEEEeCCCC-cccchHHHHHHHHh
Q 046205 55 GATLVVSG---DGRYYSKDAIQIITKMAAANGVRRVWIGQNG-LLSTPAVSAVIRER 107 (365)
Q Consensus 55 ~~~Vvvg~---D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g-~~ptP~~~~av~~~ 107 (365)
+.+|+++. |.+..+. ..++..|.+.|++|+++ | -+|...+.-++.+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~---~iv~~~lr~~G~eVi~L---G~~vp~e~i~~~a~~~ 53 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGN---KILDRALTEAGFEVINL---GVMTSQEEFIDAAIET 53 (137)
T ss_pred CCEEEEEeCCCChhHHHH---HHHHHHHHHCCCEEEEC---CCCCCHHHHHHHHHHc
Confidence 34566654 5555554 55677889999999999 6 46667777777665
No 62
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=67.92 E-value=22 Score=30.26 Aligned_cols=70 Identities=7% Similarity=0.068 Sum_probs=46.5
Q ss_pred eEEEecCCCC--cHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCC
Q 046205 224 TFCYDALHGV--AGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADG 301 (365)
Q Consensus 224 kvvvd~~~Ga--~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~ 301 (365)
||++-+-|+- -...+.+. |+..|.+|.- +-+ +. +.........+.+.|. +.++|.||.+.|
T Consensus 2 kI~igsDhaG~~lK~~l~~~-L~~~G~eV~D-~G~--~~------~~dYpd~a~~va~~V~-------~~~~~~GIliCG 64 (142)
T PRK08621 2 AIIIGADKAGFELKEVVKDY-LEDNKYEVVD-VTE--EG------AEDFVDSTLAVAKEVN-------KSEDNLGIVIDA 64 (142)
T ss_pred EEEEEeCcchHHHHHHHHHH-HHHCCCEEEE-CCC--CC------CCCcHHHHHHHHHHHH-------cCCCceEEEEcC
Confidence 5677766653 33445666 6888998753 322 10 1112335567888887 778999999999
Q ss_pred CCCeeeEee
Q 046205 302 DADRNMILG 310 (365)
Q Consensus 302 DgDR~~~vd 310 (365)
.|==+.+.-
T Consensus 65 TGiG~siaA 73 (142)
T PRK08621 65 YGAGSFMVA 73 (142)
T ss_pred CChhhhhhh
Confidence 998887775
No 63
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=65.67 E-value=29 Score=29.58 Aligned_cols=71 Identities=6% Similarity=0.078 Sum_probs=46.2
Q ss_pred ceEEEecCCCCc--HHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeC
Q 046205 223 FTFCYDALHGVA--GAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAAD 300 (365)
Q Consensus 223 ~kvvvd~~~Ga~--~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D 300 (365)
+||++-+-|+.. ...+.+. |+..|++|+- +-+ +. +.........+++.|. +.++|.||.++
T Consensus 1 MkI~IgsDh~G~~lK~~i~~~-L~~~G~eV~D-~G~--~~------~~dYpd~a~~va~~V~-------~~e~~~GIliC 63 (141)
T TIGR01118 1 MAIIIGSDLAGKRLKDVIKNF-LVDNGFEVID-VTE--GD------GQDFVDVTLAVASEVQ-------KDEQNLGIVID 63 (141)
T ss_pred CEEEEEeCcchHHHHHHHHHH-HHHCCCEEEE-cCC--CC------CCCcHHHHHHHHHHHH-------cCCCceEEEEc
Confidence 367777777642 2335556 6888998753 222 10 1111235567888887 78899999999
Q ss_pred CCCCeeeEee
Q 046205 301 GDADRNMILG 310 (365)
Q Consensus 301 ~DgDR~~~vd 310 (365)
+.|==+.+.-
T Consensus 64 GtGiG~siaA 73 (141)
T TIGR01118 64 AYGAGSFMVA 73 (141)
T ss_pred CCCHhHhhhh
Confidence 9998777765
No 64
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=62.05 E-value=22 Score=29.73 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=28.5
Q ss_pred EEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccch-HHHHHHHHh
Q 046205 60 VSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTP-AVSAVIRER 107 (365)
Q Consensus 60 vg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP-~~~~av~~~ 107 (365)
++-|.+.-+. +.++..|.++|++|+++ |..-+| .+--++++.
T Consensus 7 v~gD~HdiGk---niv~~~L~~~GfeVidL---G~~v~~e~~v~aa~~~ 49 (128)
T cd02072 7 IGSDCHAVGN---KILDHAFTEAGFNVVNL---GVLSPQEEFIDAAIET 49 (128)
T ss_pred eCCchhHHHH---HHHHHHHHHCCCEEEEC---CCCCCHHHHHHHHHHc
Confidence 3456655554 66788999999999999 764444 444455554
No 65
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=61.07 E-value=45 Score=30.29 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=36.5
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCC-cccchHHHHHHHHh
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNG-LLSTPAVSAVIRER 107 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g-~~ptP~~~~av~~~ 107 (365)
..+|+++.=.-..=..=++.++..|.+.|++|+++ | -+|..-+--++.+.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~L---G~~vp~e~~v~~~~~~ 138 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDL---GVMVPIEKILEAAKEH 138 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEEC---CCCCCHHHHHHHHHHc
Confidence 35788876444333444566788899999999999 6 57777777777776
No 66
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=60.93 E-value=52 Score=28.21 Aligned_cols=74 Identities=7% Similarity=0.062 Sum_probs=47.5
Q ss_pred ceEEEecCCCC--cHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeC
Q 046205 223 FTFCYDALHGV--AGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAAD 300 (365)
Q Consensus 223 ~kvvvd~~~Ga--~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D 300 (365)
+||++.+-|.. -...+.+. |++.|.++.- +.+. ....+.+.......+.+.|. +..+|.||.++
T Consensus 1 MkI~igsDhaG~~lK~~l~~~-L~~~g~eV~D-~G~~-----~~~~~~dYpd~a~~va~~V~-------~~~~~~GIliC 66 (148)
T TIGR02133 1 MRVVLGHDHAGFEYKEALWLD-LAAHEPEVCD-VGVY-----DADDDDDYPCFCIAAAEAVA-------RDAADLGIVIG 66 (148)
T ss_pred CEEEEEeCchhHHHHHHHHHH-HHHCCCEEEE-CCCC-----CCCCCCCchHHHHHHHHHHh-------cCCCceEEEEc
Confidence 36777777764 22335555 6888988752 2211 00111222345567888887 77899999999
Q ss_pred CCCCeeeEee
Q 046205 301 GDADRNMILG 310 (365)
Q Consensus 301 ~DgDR~~~vd 310 (365)
|.|--+.+.-
T Consensus 67 GtGiG~siaA 76 (148)
T TIGR02133 67 GSGNGEAIAA 76 (148)
T ss_pred CCChhheeee
Confidence 9999887776
No 67
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=59.06 E-value=1.3e+02 Score=26.88 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=43.2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCC
Q 046205 56 ATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNP 127 (365)
Q Consensus 56 ~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp 127 (365)
.+|+++.=.-..=..=++.++..|.+.|++|++++ --+|..-+--++.+. +++ -|.++++-.+
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG--~~vp~e~~v~~~~~~------~pd-~v~lS~~~~~ 147 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLG--RDVPIDTVVEKVKKE------KPL-MLTGSALMTT 147 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECC--CCCCHHHHHHHHHHc------CCC-EEEEcccccc
Confidence 46777664433333445677888999999999994 467777777788777 554 4777765443
No 68
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=58.12 E-value=40 Score=29.70 Aligned_cols=73 Identities=8% Similarity=0.016 Sum_probs=45.5
Q ss_pred ceEEEecCCCC--cHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeC
Q 046205 223 FTFCYDALHGV--AGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAAD 300 (365)
Q Consensus 223 ~kvvvd~~~Ga--~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D 300 (365)
+||++-+-|.. -...+.+. |++.|.+|+- +-+..+ .|.........+++.|. +..+|.||.+.
T Consensus 1 MkI~IgsDhaG~~lK~~l~~~-L~~~G~eV~D-~G~~~~------e~~dYpd~a~~va~~V~-------~g~~d~GIliC 65 (171)
T PRK08622 1 MKIAIGCDHIVTDEKMAVSDY-LKSKGHEVID-VGTYDF------TRTHYPIFGKKVGEAVA-------SGEADLGVCIC 65 (171)
T ss_pred CEEEEEeCcchHHHHHHHHHH-HHHCCCEEEE-cCCCCC------CCCChHHHHHHHHHHHH-------cCCCcEEEEEc
Confidence 36777777754 23345566 6888998752 222110 11112235567888887 77899999999
Q ss_pred CCCCeeeEee
Q 046205 301 GDADRNMILG 310 (365)
Q Consensus 301 ~DgDR~~~vd 310 (365)
+.|-=+.+.-
T Consensus 66 GTGiG~siaA 75 (171)
T PRK08622 66 GTGVGISNAV 75 (171)
T ss_pred CCcHHHHHHH
Confidence 9997666554
No 69
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=57.39 E-value=46 Score=28.35 Aligned_cols=69 Identities=9% Similarity=0.055 Sum_probs=45.3
Q ss_pred eEEEecCCCC--cHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCC
Q 046205 224 TFCYDALHGV--AGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADG 301 (365)
Q Consensus 224 kvvvd~~~Ga--~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~ 301 (365)
||++-+-|+. -...+.+. |++.|.+|+- +-+ + +.........+.+.|. +.+++.||.++|
T Consensus 2 kI~igsDhaG~~lK~~l~~~-L~~~g~eV~D-~G~--~-------~~dypd~a~~va~~V~-------~~e~~~GIliCG 63 (141)
T PRK12613 2 AIILGADAHGNALKELIKSF-LQEEGYDIID-VTD--I-------NSDFIDNTLAVAKAVN-------EAEGRLGIMVDA 63 (141)
T ss_pred EEEEEeCcchHHHHHHHHHH-HHHCCCEEEE-cCC--C-------CCChHHHHHHHHHHHH-------cCCCceEEEEcC
Confidence 5667666654 22335566 6888998753 222 1 1111235567888887 778999999999
Q ss_pred CCCeeeEee
Q 046205 302 DADRNMILG 310 (365)
Q Consensus 302 DgDR~~~vd 310 (365)
.|==+.+.-
T Consensus 64 tGiG~siaA 72 (141)
T PRK12613 64 YGAGPFMVA 72 (141)
T ss_pred CCHhHhhhh
Confidence 998776665
No 70
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=56.45 E-value=27 Score=26.04 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=31.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEe
Q 046205 56 ATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 56 ~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
++|++..|+-..++..++.+++-|...|++|..+
T Consensus 44 ~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 44 KEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 6799999999999999999999999999998865
No 71
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=56.33 E-value=1.1e+02 Score=25.78 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=34.5
Q ss_pred EEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccc-hHHHHHHHHhhcCCCCCcceeEEEeC
Q 046205 60 VSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLST-PAVSAVIRERVGSDGSKATGAFILTA 123 (365)
Q Consensus 60 vg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~pt-P~~~~av~~~~~~~~~~~~gGI~ITa 123 (365)
|+-|.+.-+. +.++..|.++|++|+++ |...+ ..+--++++. +++ -|.+++
T Consensus 9 v~~D~HdiGk---~iv~~~l~~~GfeVi~L---G~~v~~e~~v~aa~~~------~ad-iVglS~ 60 (134)
T TIGR01501 9 IGSDCHAVGN---KILDHAFTNAGFNVVNL---GVLSPQEEFIKAAIET------KAD-AILVSS 60 (134)
T ss_pred ecCChhhHhH---HHHHHHHHHCCCEEEEC---CCCCCHHHHHHHHHHc------CCC-EEEEec
Confidence 3567776665 66788899999999999 76444 4444556665 554 355555
No 72
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=54.90 E-value=51 Score=29.04 Aligned_cols=72 Identities=8% Similarity=0.011 Sum_probs=44.6
Q ss_pred eEEEecCCCC--cHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCC
Q 046205 224 TFCYDALHGV--AGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADG 301 (365)
Q Consensus 224 kvvvd~~~Ga--~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~ 301 (365)
||++-+-|+. -...+.+. |+..|++|.- +-+ +.. .|.........+++.|. +..+|.||.+.+
T Consensus 2 kI~igsDhaG~~lK~~l~~~-L~~~G~eV~D-~G~--~~~----~~~dYpd~a~~va~~V~-------~g~~d~GIliCG 66 (171)
T PRK12615 2 KIAIGCDHIVTNEKMAVSDF-LKSKGYDVID-CGT--YDH----TRTHYPIFGKKVGEAVV-------NGQADLGVCICG 66 (171)
T ss_pred EEEEEeCchhHHHHHHHHHH-HHHCCCEEEE-cCC--CCC----CCCChHHHHHHHHHHHH-------cCCCCEEEEEcC
Confidence 5777777654 22335566 6888988752 221 110 01112235567788887 778999999999
Q ss_pred CCCeeeEee
Q 046205 302 DADRNMILG 310 (365)
Q Consensus 302 DgDR~~~vd 310 (365)
.|-=+.+.-
T Consensus 67 TGiG~siaA 75 (171)
T PRK12615 67 TGVGINNAV 75 (171)
T ss_pred CcHHHHHHH
Confidence 997666554
No 73
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=52.57 E-value=54 Score=28.12 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=45.1
Q ss_pred eEEEecCCCC--cHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCC
Q 046205 224 TFCYDALHGV--AGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADG 301 (365)
Q Consensus 224 kvvvd~~~Ga--~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~ 301 (365)
||++-+-|.- -...+.+. |++.|.+|+- +-+... ..|.........+++.|. +..+|.||.+++
T Consensus 2 kI~igsDhaG~~lK~~l~~~-L~~~g~eV~D-~G~~~~-----~~~~dYpd~a~~va~~V~-------~g~~~~GIliCG 67 (148)
T PRK05571 2 KIAIGSDHAGFELKEEIIEH-LEELGHEVID-LGPDSY-----DASVDYPDYAKKVAEAVV-------AGEADRGILICG 67 (148)
T ss_pred EEEEEeCCchHHHHHHHHHH-HHHCCCEEEE-cCCCCC-----CCCCCHHHHHHHHHHHHH-------cCCCCEEEEEcC
Confidence 5666666653 23345566 6888998752 221100 001122345567888887 778999999999
Q ss_pred CCCeeeEee
Q 046205 302 DADRNMILG 310 (365)
Q Consensus 302 DgDR~~~vd 310 (365)
.|-=+.+.-
T Consensus 68 tGiG~siaA 76 (148)
T PRK05571 68 TGIGMSIAA 76 (148)
T ss_pred CcHHHHHHH
Confidence 998666554
No 74
>PLN02739 serine acetyltransferase
Probab=51.74 E-value=16 Score=35.86 Aligned_cols=34 Identities=9% Similarity=0.179 Sum_probs=29.6
Q ss_pred cccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCC
Q 046205 28 VKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGR 65 (365)
Q Consensus 28 ~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R 65 (365)
++.+.|+++..+++.+|+..++ ++++|.+|+|..
T Consensus 320 m~~DaT~e~~~~Ia~ay~~lf~----~g~sI~~g~~~~ 353 (355)
T PLN02739 320 MEYDATREFFQNVAVAYRETIP----NGSSVSGSCREK 353 (355)
T ss_pred hhhhhhHHHHHHHHHHHHhhcc----CCCeEEeecccc
Confidence 4457999999999999999987 678999999875
No 75
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=51.43 E-value=1.8e+02 Score=25.91 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=33.2
Q ss_pred CCeEEEEe---cCCCChHHHHHHHHHHHHHcCCEEEEeCCCC-cccchHHHHHHHHh
Q 046205 55 GATLVVSG---DGRYYSKDAIQIITKMAAANGVRRVWIGQNG-LLSTPAVSAVIRER 107 (365)
Q Consensus 55 ~~~Vvvg~---D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g-~~ptP~~~~av~~~ 107 (365)
..+|+++. |.+.-+ ++.++..|...|++|+++ | -+|...+.-++.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG---~~~v~~~l~~~G~~vi~l---G~~~p~~~l~~~~~~~ 132 (201)
T cd02070 82 KGKVVIGTVEGDIHDIG---KNLVATMLEANGFEVIDL---GRDVPPEEFVEAVKEH 132 (201)
T ss_pred CCeEEEEecCCccchHH---HHHHHHHHHHCCCEEEEC---CCCCCHHHHHHHHHHc
Confidence 35677765 555444 455688899999999999 6 45666777677665
No 76
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=51.02 E-value=66 Score=27.72 Aligned_cols=73 Identities=7% Similarity=-0.027 Sum_probs=45.8
Q ss_pred ceEEEecCCCCc--HHHHHHHHHHH--cCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEe
Q 046205 223 FTFCYDALHGVA--GAYAKRIFVEE--LGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAA 298 (365)
Q Consensus 223 ~kvvvd~~~Ga~--~~~~~~i~l~~--lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~ 298 (365)
+||++-+-|+.- ...+.+. |++ .|.+|+- +- ++.. .|-........+++.|. +..++.||.
T Consensus 3 mkI~igsDhaG~~lK~~l~~~-L~~~~~g~eV~D-~G--~~~~----~~~dYp~~a~~va~~V~-------~~~~~~GIl 67 (151)
T PTZ00215 3 KKVAIGSDHAGFDLKNEIIDY-IKNKGKEYKIED-MG--TYTA----ESVDYPDFAEKVCEEVL-------KGEADTGIL 67 (151)
T ss_pred cEEEEEeCCchHHHHHHHHHH-HHhccCCCEEEE-cC--CCCC----CCCCHHHHHHHHHHHHh-------cCCCcEEEE
Confidence 578888877642 2335566 688 8988752 21 1110 11112234567888887 778999999
Q ss_pred eCCCCCeeeEee
Q 046205 299 ADGDADRNMILG 310 (365)
Q Consensus 299 ~D~DgDR~~~vd 310 (365)
++|.|=-+.+.-
T Consensus 68 iCGtGiG~siaA 79 (151)
T PTZ00215 68 VCGSGIGISIAA 79 (151)
T ss_pred EcCCcHHHHHHH
Confidence 999997555554
No 77
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=48.69 E-value=73 Score=28.04 Aligned_cols=72 Identities=8% Similarity=-0.002 Sum_probs=43.8
Q ss_pred eEEEecCCCC--cHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCC
Q 046205 224 TFCYDALHGV--AGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADG 301 (365)
Q Consensus 224 kvvvd~~~Ga--~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~ 301 (365)
||++-+-|.. -...+.+. |++.|.+|.- +-+ ... .|-........+++.|. +..+|.||.+++
T Consensus 2 kI~igsDhaG~~lK~~l~~~-L~~~G~eV~D-~G~--~~~----~~~dYpd~a~~va~~V~-------~g~~~~GIliCG 66 (171)
T TIGR01119 2 KIAIGCDHIVTDVKMEVSEF-LKSKGYEVLD-VGT--YDF----TRTHYPIFGKKVGEAVV-------SGEADLGVCICG 66 (171)
T ss_pred EEEEEeCCchHHHHHHHHHH-HHHCCCEEEE-eCC--CCC----CCCChHHHHHHHHHHHH-------cCCCCEEEEEcC
Confidence 5777766653 22335555 6888998752 221 110 01112235567888887 778999999999
Q ss_pred CCCeeeEee
Q 046205 302 DADRNMILG 310 (365)
Q Consensus 302 DgDR~~~vd 310 (365)
.|-=+.+.-
T Consensus 67 TGiG~siaA 75 (171)
T TIGR01119 67 TGVGINNAV 75 (171)
T ss_pred CcHHHHHHH
Confidence 997555443
No 78
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=48.45 E-value=66 Score=27.45 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=42.5
Q ss_pred EEEecCCCC--cHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCC
Q 046205 225 FCYDALHGV--AGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGD 302 (365)
Q Consensus 225 vvvd~~~Ga--~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~D 302 (365)
|++-+-|.. -...+.+. |++.|.+|.- +-+... .|-........+.+.|. +..+|.||.+++.
T Consensus 2 I~igsDhaG~~lK~~l~~~-L~~~g~eV~D-~G~~~~------~~~dYpd~a~~va~~V~-------~~~~~~GIliCGt 66 (143)
T TIGR01120 2 IAIGSDHAGFILKEEIKAF-LVERGVKVID-KGTWSS------ERTDYPHYAKQVALAVA-------GGEVDGGILICGT 66 (143)
T ss_pred EEEEeCcchHHHHHHHHHH-HHHCCCEEEE-eCCCCC------CCCCHHHHHHHHHHHHH-------CCCCceEEEEcCC
Confidence 455555543 22345566 6889998752 222110 01111234557788887 7789999999999
Q ss_pred CCeeeEee
Q 046205 303 ADRNMILG 310 (365)
Q Consensus 303 gDR~~~vd 310 (365)
|-=+.+.-
T Consensus 67 GiG~siaA 74 (143)
T TIGR01120 67 GIGMSIAA 74 (143)
T ss_pred cHHHHHHH
Confidence 97665554
No 79
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=47.52 E-value=52 Score=27.49 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=26.9
Q ss_pred EecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccch-HHHHHHHHh
Q 046205 61 SGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTP-AVSAVIRER 107 (365)
Q Consensus 61 g~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP-~~~~av~~~ 107 (365)
+-|.+.-+. +.++..|.+.|++|+++ |.-.+| .+--++.+.
T Consensus 11 g~D~Hd~g~---~iv~~~l~~~GfeVi~l---g~~~s~e~~v~aa~e~ 52 (132)
T TIGR00640 11 GQDGHDRGA---KVIATAYADLGFDVDVG---PLFQTPEEIARQAVEA 52 (132)
T ss_pred CCCccHHHH---HHHHHHHHhCCcEEEEC---CCCCCHHHHHHHHHHc
Confidence 456655554 55688899999999999 654444 444445554
No 80
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=46.54 E-value=63 Score=31.64 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=36.3
Q ss_pred CCceEEEecCCCCcH----HHHHHHHHHHcCCc--eeeeeccccCCCCCCCCCCC-ChhcHHHHHHHh
Q 046205 221 PKFTFCYDALHGVAG----AYAKRIFVEELGAQ--ESSLLNCTPKEDFGGGHPDP-NLTYAKELVARM 281 (365)
Q Consensus 221 ~~~kvvvd~~~Ga~~----~~~~~i~l~~lg~~--v~~~~~~~~d~~f~~~~p~p-~~~~l~~l~~~v 281 (365)
..+.|++|+.|+.+. ..+... .-.+|++ ++ ..|.+||...+.+ +.- ....+.+|.+.+
T Consensus 261 ~~lPVi~d~sH~~G~~~~v~~~a~A-AvA~GAdGliI-E~H~~pd~alsD~-~~sl~p~e~~~lv~~i 325 (335)
T PRK08673 261 THLPVIVDPSHATGKRDLVEPLALA-AVAAGADGLIV-EVHPDPEKALSDG-PQSLTPEEFEELMKKL 325 (335)
T ss_pred cCCCEEEeCCCCCccccchHHHHHH-HHHhCCCEEEE-EecCCcccCCCcc-hhcCCHHHHHHHHHHH
Confidence 478999999999986 233444 4678998 54 3788888776443 222 123444554444
No 81
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=46.48 E-value=1.2e+02 Score=24.61 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=27.7
Q ss_pred ecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHh
Q 046205 62 GDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRER 107 (365)
Q Consensus 62 ~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~ 107 (365)
-|.+..+. +.++..|...|++|++++ ..+|+..+.-++.+.
T Consensus 9 gd~H~lG~---~~~~~~l~~~G~~vi~lG--~~vp~e~~~~~a~~~ 49 (122)
T cd02071 9 LDGHDRGA---KVIARALRDAGFEVIYTG--LRQTPEEIVEAAIQE 49 (122)
T ss_pred CChhHHHH---HHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHc
Confidence 34444444 445667999999999993 356766666666665
No 82
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.83 E-value=59 Score=30.70 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=35.1
Q ss_pred CCceEEEecCCCCcH----HHHHHHHHHHcCCc--eeeeeccccCCCCCCCCCCC-ChhcHHHHHHHhc
Q 046205 221 PKFTFCYDALHGVAG----AYAKRIFVEELGAQ--ESSLLNCTPKEDFGGGHPDP-NLTYAKELVARMG 282 (365)
Q Consensus 221 ~~~kvvvd~~~Ga~~----~~~~~i~l~~lg~~--v~~~~~~~~d~~f~~~~p~p-~~~~l~~l~~~v~ 282 (365)
.++.|++|+.|+.+. ..+... .-.+|++ ++ ..|.+||...+.+ +.- ....+.+|.+.++
T Consensus 195 ~~~pV~~D~sHs~G~~~~v~~~~~a-Ava~Ga~Gl~i-E~H~~pd~a~~D~-~~sl~p~~l~~l~~~i~ 260 (266)
T PRK13398 195 SHLPIIVDPSHATGRRELVIPMAKA-AIAAGADGLMI-EVHPEPEKALSDA-RQTLNFEEMKELVDELK 260 (266)
T ss_pred cCCCEEEeCCCcccchhhHHHHHHH-HHHcCCCEEEE-eccCCccccCCch-hhcCCHHHHHHHHHHHH
Confidence 478899999999982 222333 3578998 44 3677777665433 121 1235555555443
No 83
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=45.28 E-value=1.4e+02 Score=29.70 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhcccCCCeEEEEecCCC-ChHHHHHHHHHHHH--HcCCEEEEe
Q 046205 40 FVQSTFNALSAEKVRGATLVVSGDGRY-YSKDAIQIITKMAA--ANGVRRVWI 89 (365)
Q Consensus 40 l~~a~g~~l~~~~~~~~~Vvvg~D~R~-~s~~~~~a~a~gL~--s~G~~V~~~ 89 (365)
+...|-.+... ...++|+|-+++.. +.+++|+++++++. +.|++|...
T Consensus 234 ~~~~Y~~~~~~--~~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~ 284 (394)
T PRK11921 234 IVEKYLEWAAN--YQENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLY 284 (394)
T ss_pred HHHHHHHHhhc--CCcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEE
Confidence 33444444432 24567888888874 77899999999998 789888655
No 84
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=43.84 E-value=3.2e+02 Score=27.58 Aligned_cols=83 Identities=11% Similarity=0.074 Sum_probs=52.9
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCC--CC----cccchH-------HHHHHHHhhcCCCCCcceeEEE
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQ--NG----LLSTPA-------VSAVIRERVGSDGSKATGAFIL 121 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~--~g----~~ptP~-------~~~av~~~~~~~~~~~~gGI~I 121 (365)
+-+|+|-+-+-..+..+.. .|...|++|+.+.. +| ..|.|. +.-.++.. +++-||.
T Consensus 164 ~lkVvvd~~~Ga~~~~~~~----ll~~lg~~vv~~~~~~d~~Fp~~~p~P~~~~~l~~l~~~v~~~------~adlGia- 232 (445)
T PRK09542 164 PLKVAVDAGNGMGGHTVPA----VLGGLPITLLPLYFELDGTFPNHEANPLDPANLVDLQAFVRET------GADIGLA- 232 (445)
T ss_pred CCEEEEECCCCchhHHHHH----HHHhCCCEEEEEecCcCCCCCCCCcCCCCHHHHHHHHHHHHHc------CCCEEEE-
Confidence 3467776655555544443 34466999986621 11 334442 34446776 8999996
Q ss_pred eCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHH
Q 046205 122 TASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIY 155 (365)
Q Consensus 122 TaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie 155 (365)
++| +---+-+++++|..++++..-.|-
T Consensus 233 ---~Dg----D~DR~~ivd~~G~~l~~d~~~~l~ 259 (445)
T PRK09542 233 ---FDG----DADRCFVVDERGQPVSPSAVTALV 259 (445)
T ss_pred ---ECC----CCceEEEECCCCCCccHHHHHHHH
Confidence 677 556667899999999987654443
No 85
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.98 E-value=70 Score=31.53 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=29.6
Q ss_pred CCceEEEecCCCCc-HHHHHHHH--HHHcCCc--eeeeeccccCCCCCCC
Q 046205 221 PKFTFCYDALHGVA-GAYAKRIF--VEELGAQ--ESSLLNCTPKEDFGGG 265 (365)
Q Consensus 221 ~~~kvvvd~~~Ga~-~~~~~~i~--l~~lg~~--v~~~~~~~~d~~f~~~ 265 (365)
..+.|++|+.|+++ +...+.+= .-.+|++ ++ ..|.+||......
T Consensus 270 ~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliI-E~H~~pd~AlsD~ 318 (352)
T PRK13396 270 THLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMI-EVHPNPAKALSDG 318 (352)
T ss_pred hCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEE-EecCCcccCCChh
Confidence 47899999999887 33333220 3467999 55 3788888776633
No 86
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=42.07 E-value=76 Score=31.81 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=34.9
Q ss_pred cCCCeEEEEec-----CCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHH
Q 046205 53 VRGATLVVSGD-----GRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSA 102 (365)
Q Consensus 53 ~~~~~Vvvg~D-----~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~ 102 (365)
..+.+|++..| .|. -..+++++..+...|++|+..+..+.-|.|.+.-
T Consensus 185 l~g~kVaivg~~~~~~g~~--~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~ 237 (395)
T PRK07200 185 LKGKKIAMTWAYSPSYGKP--LSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVE 237 (395)
T ss_pred cCCCEEEEEeccccccCCc--chHHHHHHHHHHHcCCEEEEECCCccCCCHHHHH
Confidence 34567888766 333 3667888888888999999997777777777543
No 87
>PRK14047 putative methyltransferase; Provisional
Probab=41.62 E-value=1.5e+02 Score=28.57 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=49.3
Q ss_pred ccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcH
Q 046205 195 FDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYA 274 (365)
Q Consensus 195 ~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l 274 (365)
.+....|++++.+.. ...+.+|+..+....-..+. ..++|+.=. .+.+. .++.-.++++
T Consensus 81 ~EA~~kYidfv~ei~------------d~PfliDS~~~~~R~aa~~y-v~E~GladR-~IYNS-------In~s~~~~Ei 139 (310)
T PRK14047 81 PEAITNYIDFFSEVT------------DSPFLIDSPEGEVRAAAAEY-VTEIGLADR-AIYNS-------INMSIHESEI 139 (310)
T ss_pred HHHHHHHHHHHhhcc------------CCCeEecCCCHHHHHHHHhh-hhhhchhHH-HHHhh-------cCccCCHHHH
Confidence 478899999988754 35689998887766555555 577786421 12221 2233334455
Q ss_pred HHHHHHhcCCCCCCCCCCCeEEEeeCCCC
Q 046205 275 KELVARMGLGKSNTQDEPPEFGAAADGDA 303 (365)
Q Consensus 275 ~~l~~~v~~~~~~a~~~~adlgi~~D~Dg 303 (365)
..|.+. .-++-+.++||+--
T Consensus 140 eaL~~s---------di~aaIiLaFn~~d 159 (310)
T PRK14047 140 EALKQS---------DIDSSIVLGFNAMD 159 (310)
T ss_pred HHHHhc---------CCCeEEEEecCCCC
Confidence 555443 45677888888753
No 88
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=41.55 E-value=1.4e+02 Score=28.83 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=49.8
Q ss_pred ccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcH
Q 046205 195 FDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYA 274 (365)
Q Consensus 195 ~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l 274 (365)
.+....|++++.+..| ..+.+|+..+...--..+. ..++|+.=. .+.+. .++.-.++++
T Consensus 81 ~EA~~kYidfv~~i~d------------~PfliDS~~~~~r~aa~ky-~~E~GladR-~IYNS-------In~s~~~eEi 139 (314)
T TIGR01114 81 PEAIVRYIDWVADITD------------APFLIDSTSGEARAAAAKY-ATEVGLADR-AIYNS-------INASIEEEEI 139 (314)
T ss_pred HHHHHHHHHHHhcccC------------CCeEecCCcHHHHHHHhhh-hhhhchHHH-HHHhh-------cCccCCHHHH
Confidence 5788999999887543 5689998887766555555 577786421 12221 2333344555
Q ss_pred HHHHHHhcCCCCCCCCCCCeEEEeeCCCC
Q 046205 275 KELVARMGLGKSNTQDEPPEFGAAADGDA 303 (365)
Q Consensus 275 ~~l~~~v~~~~~~a~~~~adlgi~~D~Dg 303 (365)
..|.+. .-++-+.++||+--
T Consensus 140 eaL~es---------di~aaIiLaFnp~d 159 (314)
T TIGR01114 140 QVLKES---------DLSAAIVLAFNPMD 159 (314)
T ss_pred HHHHhc---------CCCeEEEEecCCCC
Confidence 555543 45678889998753
No 89
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=41.52 E-value=58 Score=26.10 Aligned_cols=32 Identities=9% Similarity=-0.037 Sum_probs=26.9
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHcCCEEE
Q 046205 56 ATLVVSGDGRYYSKDAIQIITKMAAANGVRRV 87 (365)
Q Consensus 56 ~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~ 87 (365)
++|++.|-+..+|.++++-+-+.+...|+++.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~ 33 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIE 33 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceE
Confidence 35888888888888999999999999998764
No 90
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=41.32 E-value=1.8e+02 Score=24.75 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCcccchHHH-HHHHHhhcCCCCCcceeE--EEeCCCCCCCCCCCCeEEEEc---CC
Q 046205 69 KDAIQIITKMAAANGVRRVWIGQNGLLSTPAVS-AVIRERVGSDGSKATGAF--ILTASHNPGGPNEDFGIKYNM---DN 142 (365)
Q Consensus 69 ~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~-~av~~~~~~~~~~~~gGI--~ITaShnp~~~~~~nGiK~~~---~~ 142 (365)
..+++.+...|.+.|++|+.......-++..-+ ..+... +++.-| |.-++.++ ..+|+.++. ..
T Consensus 27 l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~------~ad~~isiH~na~~~~----~~~G~ev~~~~~~~ 96 (175)
T PF01520_consen 27 LDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSW------GADLFISIHFNASNGG----AARGTEVYYSYNSS 96 (175)
T ss_dssp HHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHT------TSSEEEEEEEE-SSST----T--SEEEEEHHHCC
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhc------ccCEEEEEeecCccCC----cCCceEEEEecccc
Confidence 345677777888888888886332111111111 122333 555444 44445555 569999988 66
Q ss_pred CCCCChhhHHHHHHHhhh
Q 046205 143 GGPAPEGITDKIYENTKT 160 (365)
Q Consensus 143 G~~i~~~~~~~Ie~~~~~ 160 (365)
+..-+....+.|.+.+.+
T Consensus 97 ~~~~s~~lA~~i~~~l~~ 114 (175)
T PF01520_consen 97 NSAKSKKLAKSIQKELSK 114 (175)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhh
Confidence 666666666677666554
No 91
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=40.82 E-value=52 Score=27.95 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=43.9
Q ss_pred eEEEecCCCC--cHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCC
Q 046205 224 TFCYDALHGV--AGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADG 301 (365)
Q Consensus 224 kvvvd~~~Ga--~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~ 301 (365)
||++-+-|+. -...+.+. |++.|.++.- +-+... .+.........+.+.|. +..+|.||.+++
T Consensus 1 KI~igsDh~g~~lK~~i~~~-L~~~g~eV~D-~G~~~~------~~~dy~~~a~~va~~V~-------~~~~d~GIliCg 65 (140)
T PF02502_consen 1 KIAIGSDHAGFELKEAIKEY-LEEKGYEVID-FGTYSE------DSVDYPDFAEKVAEAVA-------SGEADRGILICG 65 (140)
T ss_dssp EEEEEE-GGGHHHHHHHHHH-HHHTTEEEEE-ESESST------ST--HHHHHHHHHHHHH-------TTSSSEEEEEES
T ss_pred CEEEEeCHHHHHHHHHHHHH-HHHCCCEEEE-eCCCCC------CCCCHHHHHHHHHHHHH-------cccCCeEEEEcC
Confidence 4555555533 23345566 6888988753 222110 01112345567888888 788999999999
Q ss_pred CCCeeeEee
Q 046205 302 DADRNMILG 310 (365)
Q Consensus 302 DgDR~~~vd 310 (365)
.|-=+.+.-
T Consensus 66 tGiG~~iaA 74 (140)
T PF02502_consen 66 TGIGMSIAA 74 (140)
T ss_dssp SSHHHHHHH
T ss_pred CChhhhhHh
Confidence 998777665
No 92
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=40.55 E-value=1.9e+02 Score=27.74 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=50.6
Q ss_pred ccchHHHHHHHHhhcCHHHHHhhcCCCCceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcH
Q 046205 195 FDSASDYVKLMKSIFDFELIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYA 274 (365)
Q Consensus 195 ~d~~~~Y~~~l~~~~~~~~i~~~~~~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l 274 (365)
.+....|++++.+.. +..+.+|+..+..+--..+. ..++|+.=. ++.+. .++.-.++++
T Consensus 76 ~EA~~kYidFv~~i~------------d~PfliDS~~~~~R~~a~~y-v~E~Gl~dR-~IYNS-------In~~~~~~Ei 134 (296)
T PF02007_consen 76 PEAMEKYIDFVAEIT------------DSPFLIDSSSPEVRIAAAKY-VTEIGLADR-AIYNS-------INMSIEDEEI 134 (296)
T ss_pred HHHHHHHHHHHhhcC------------CCCeEecCCCHHHHHHHHHH-Hhhhchhhh-hhhhc-------CCCCCCHHHH
Confidence 478899999988754 35689999888877666666 688887421 22221 2333334454
Q ss_pred HHHHHHhcCCCCCCCCCCCeEEEeeCCCC
Q 046205 275 KELVARMGLGKSNTQDEPPEFGAAADGDA 303 (365)
Q Consensus 275 ~~l~~~v~~~~~~a~~~~adlgi~~D~Dg 303 (365)
..|.+. .-++-+.++||+.-
T Consensus 135 eaLkes---------~i~aaIvLaFn~~d 154 (296)
T PF02007_consen 135 EALKES---------DIDAAIVLAFNPMD 154 (296)
T ss_pred HHHHhc---------CCCEEEEEecCCCC
Confidence 444443 44677888888754
No 93
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=40.34 E-value=41 Score=33.65 Aligned_cols=73 Identities=10% Similarity=0.159 Sum_probs=54.9
Q ss_pred ccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHH
Q 046205 27 KVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRE 106 (365)
Q Consensus 27 ~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~ 106 (365)
.+++-.+|||++. |.|+-..+. ..+||||.+...+...+....+..+. +.+.++.- +....-++-|+...
T Consensus 142 ~f~v~~NPEFLRE-G~Av~D~~~-----PdRIViG~~~~~a~~~~~ely~~~~~-~~~p~l~t---~~~~AE~IKyaaNa 211 (414)
T COG1004 142 DFEVASNPEFLRE-GSAVYDFLY-----PDRIVIGVRSERAAAVLRELYAPFLR-QDVPILFT---DLREAELIKYAANA 211 (414)
T ss_pred CceEecChHHhcC-cchhhhccC-----CCeEEEccCChhHHHHHHHHHhhhhh-cCCCEEEe---cchHHHHHHHHHHH
Confidence 3445567998744 666666553 46799999998888888888888777 88998887 88888888888655
Q ss_pred hhc
Q 046205 107 RVG 109 (365)
Q Consensus 107 ~~~ 109 (365)
+..
T Consensus 212 fLA 214 (414)
T COG1004 212 FLA 214 (414)
T ss_pred HHH
Confidence 543
No 94
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=40.10 E-value=74 Score=27.16 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=29.6
Q ss_pred CCeEEE---EecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHH
Q 046205 55 GATLVV---SGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVS 101 (365)
Q Consensus 55 ~~~Vvv---g~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~ 101 (365)
..+|+| |-|.+.-+. +.++..|.+.|++|++. |...||.=.
T Consensus 12 rprvlvak~GlDgHd~ga---kvia~~l~d~GfeVi~~---g~~~tp~e~ 55 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGA---KVIARALADAGFEVINL---GLFQTPEEA 55 (143)
T ss_pred CceEEEeccCccccccch---HHHHHHHHhCCceEEec---CCcCCHHHH
Confidence 345665 566665554 45588899999999999 888888533
No 95
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=37.69 E-value=1.5e+02 Score=27.64 Aligned_cols=99 Identities=19% Similarity=0.176 Sum_probs=62.3
Q ss_pred CCcCCCCCc-c-cccccccchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCE--EEEeCC
Q 046205 16 GQKPGTSGL-R-KKVKVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVR--RVWIGQ 91 (365)
Q Consensus 16 ~~~Fgt~Gi-R-G~~~~~~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~--V~~~~~ 91 (365)
-+++|++.+ . |..+ +-+..|+-.|+--|-. + +.+.|+++-|++..+..=+.++..-|.+.|+. .+....
T Consensus 48 ivVLGa~~~~~~g~ps----~~l~~Rl~~A~~LYk~--g-k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~ 120 (239)
T PRK10834 48 GVVLGTAKYYRTGVIN----QYYRYRIQGAINAYNS--G-KVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDY 120 (239)
T ss_pred EEEcCCcccCCCCCcC----HHHHHHHHHHHHHHHh--C-CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecC
Confidence 466787643 1 3333 5555777776553322 2 44679999998765555567788889999987 333333
Q ss_pred CCcccchHHHHHHHHhhcCCCCCcceeEEEeC-CCCC
Q 046205 92 NGLLSTPAVSAVIRERVGSDGSKATGAFILTA-SHNP 127 (365)
Q Consensus 92 ~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITa-Shnp 127 (365)
.|.-+---+.++-+-+ +...-+.||. .|.|
T Consensus 121 ~s~nT~en~~~a~~i~------~~~~~iIVTq~fHm~ 151 (239)
T PRK10834 121 AGFRTLDSIVRTRKVF------DTNDFIIITQRFHCE 151 (239)
T ss_pred CCCCHHHHHHHHHHHh------CCCCEEEECCHHHHH
Confidence 4566666666776666 5555677766 5777
No 96
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=36.36 E-value=89 Score=26.67 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCCCCCeeeEee
Q 046205 237 YAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 310 (365)
Q Consensus 237 ~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~DgDR~~~vd 310 (365)
.+.+. |++.|.+|.- +-+..+ .|.........+.+.|. +..+|.||.+++.|-=+.+.-
T Consensus 15 ~l~~~-L~~~g~eV~D-~G~~~~------~~~dYpd~a~~va~~V~-------~g~~~~GIliCGtGiG~siaA 73 (144)
T TIGR00689 15 EIIEH-LKQKGHEVID-CGTLYD------ERVDYPDYAKLVADKVV-------AGEVSLGILICGTGIGMSIAA 73 (144)
T ss_pred HHHHH-HHHCCCEEEE-cCCCCC------CCCChHHHHHHHHHHHH-------cCCCceEEEEcCCcHHHHHHH
Confidence 45556 7888998752 222110 11112235567888887 778999999999997665554
No 97
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=35.83 E-value=4.7e+02 Score=26.28 Aligned_cols=82 Identities=11% Similarity=0.127 Sum_probs=50.3
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCC-----Ccccch------HHHHHHHHhhcCCCCCcceeEEEeC
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQN-----GLLSTP------AVSAVIRERVGSDGSKATGAFILTA 123 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~-----g~~ptP------~~~~av~~~~~~~~~~~~gGI~ITa 123 (365)
+-+|+|-+-+...+. .+...|.+.|++|+.+... ...|.| .+.-.+++. +++-||.
T Consensus 168 ~lkIvvd~~~G~~~~----~~~~ll~~lG~~v~~i~~~~d~~~~~~~~~~~~~l~~l~~~v~~~------~adlgia--- 234 (441)
T cd05805 168 GLKVVIDYAYGVAGI----VLPGLLSRLGCDVVILNARLDEDAPRTDTERQRSLDRLGRIVKAL------GADFGVI--- 234 (441)
T ss_pred CCeEEEECCCchHHH----HHHHHHHHcCCEEEEEecccCCccCCCCccchhHHHHHHHHHHhC------CCCEEEE---
Confidence 345766555554443 3345567789999876211 111221 244456666 8888986
Q ss_pred CCCCCCCCCCCeEEEEcCCCCCCChhhHHHH
Q 046205 124 SHNPGGPNEDFGIKYNMDNGGPAPEGITDKI 154 (365)
Q Consensus 124 Shnp~~~~~~nGiK~~~~~G~~i~~~~~~~I 154 (365)
++| +---+-+++++|..++.+..-.+
T Consensus 235 -~Dg----DaDR~~vvd~~G~~~~gd~l~~l 260 (441)
T cd05805 235 -IDP----NGERLILVDEAGRVISDDLLTAL 260 (441)
T ss_pred -EcC----CCCEEEEECCCCCEEChhHHHHH
Confidence 566 55666678999999987765443
No 98
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=35.45 E-value=29 Score=25.98 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEe
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
.+.|++..|+-..++..++.++.-|...|++|..+
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~v 80 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTRV 80 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG---------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhccccccC
Confidence 36899999999999999999999999999998743
No 99
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=35.43 E-value=2.8e+02 Score=28.50 Aligned_cols=36 Identities=11% Similarity=-0.025 Sum_probs=29.1
Q ss_pred CCCeEEEEecCCCC-hHHHHHHHHHHHHHc--CCEEEEe
Q 046205 54 RGATLVVSGDGRYY-SKDAIQIITKMAAAN--GVRRVWI 89 (365)
Q Consensus 54 ~~~~Vvvg~D~R~~-s~~~~~a~a~gL~s~--G~~V~~~ 89 (365)
..++|+|-+++... .+.+|++++++|.+. |++|...
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~ 288 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIF 288 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 34679999998865 899999999999976 6776555
No 100
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=35.15 E-value=1.6e+02 Score=22.86 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=27.5
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEE
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVW 88 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~ 88 (365)
+|++.|.+..+|.++++.+-+.+...|+++..
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v 32 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEI 32 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEE
Confidence 38888999988889999999999999998543
No 101
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=34.79 E-value=2.5e+02 Score=25.84 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=50.8
Q ss_pred EEEEec------CCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhc-CCCCCcceeEEEeCCCCC
Q 046205 58 LVVSGD------GRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVG-SDGSKATGAFILTASHNP 127 (365)
Q Consensus 58 Vvvg~D------~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~-~~~~~~~gGI~ITaShnp 127 (365)
++|+.. .|..+..=+++++..|.+.|++|... --.+...+.-+++++-. ..+++.+..+.+-+||--
T Consensus 12 lII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~---~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~ 85 (241)
T smart00115 12 LIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVK---NNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGE 85 (241)
T ss_pred EEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEe---cCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCC
Confidence 667765 56778888999999999999999988 56677777777776622 124566778888889953
No 102
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.57 E-value=2.3e+02 Score=22.45 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=18.8
Q ss_pred EecCCCChHHHHHHHHHHHHHcCCEEEEe
Q 046205 61 SGDGRYYSKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 61 g~D~R~~s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
+.|.+..+. ..++..|...|++|+++
T Consensus 8 ~~e~H~lG~---~~~~~~l~~~G~~V~~l 33 (119)
T cd02067 8 GGDGHDIGK---NIVARALRDAGFEVIDL 33 (119)
T ss_pred CCchhhHHH---HHHHHHHHHCCCEEEEC
Confidence 345554444 46678899999999999
No 103
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=33.56 E-value=52 Score=25.83 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=34.9
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHH
Q 046205 56 ATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSA 102 (365)
Q Consensus 56 ~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~ 102 (365)
++|+|+-|....++...+.+..-....|.+++.+ .+.+.+....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l---~v~~~~~~~~ 46 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLL---HVIPPPPQYS 46 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEE---EEEESCHCHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEE---Eeeccccccc
Confidence 5799999999999988888888777789998888 5665554443
No 104
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=32.92 E-value=1.5e+02 Score=27.58 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCC
Q 046205 64 GRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNP 127 (365)
Q Consensus 64 ~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp 127 (365)
.|.++..|...+.+.....|.+|+++ |..|. ++.-++..+ +...|+.|...|+|
T Consensus 86 ~Rv~G~dl~~~ll~~~~~~~~~v~ll---G~~~~-v~~~a~~~l------~~~y~l~i~g~~~G 139 (243)
T PRK03692 86 SRVAGADLWEALMARAGKEGTPVFLV---GGKPE-VLAQTEAKL------RTQWNVNIVGSQDG 139 (243)
T ss_pred CeeChHHHHHHHHHHHHhcCCeEEEE---CCCHH-HHHHHHHHH------HHHhCCEEEEEeCC
Confidence 37778888888888888899999999 76665 445555555 33337777777777
No 105
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=32.57 E-value=1.1e+02 Score=29.90 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=47.1
Q ss_pred CceEEEecCCCCcH--HHHHHHHHHHcC-CceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEe
Q 046205 222 KFTFCYDALHGVAG--AYAKRIFVEELG-AQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAA 298 (365)
Q Consensus 222 ~~kvvvd~~~Ga~~--~~~~~i~l~~lg-~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~ 298 (365)
.-||.+-+..|+-- .++.++ .+.|. .++. .|.++.|||..+.+..-.+.++ +++.|+.++
T Consensus 29 ~~kVLi~YGGGSIKrnGvydqV-~~~Lkg~~~~---------E~~GVEPNP~~~Tv~kaV~i~k-------ee~idflLA 91 (384)
T COG1979 29 DAKVLIVYGGGSIKKNGVYDQV-VEALKGIEVI---------EFGGVEPNPRLETLMKAVEICK-------EENIDFLLA 91 (384)
T ss_pred cCeEEEEecCccccccchHHHH-HHHhcCceEE---------EecCCCCCchHHHHHHHHHHHH-------HcCceEEEE
Confidence 47888888888732 356677 56665 3332 4778899999888888888888 899999998
Q ss_pred eCC
Q 046205 299 ADG 301 (365)
Q Consensus 299 ~D~ 301 (365)
.-|
T Consensus 92 VGG 94 (384)
T COG1979 92 VGG 94 (384)
T ss_pred ecC
Confidence 765
No 106
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=32.56 E-value=1.8e+02 Score=25.13 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=42.9
Q ss_pred ceEEEecCCCCcH--HHHHHHHHHHcCCceeeeeccccCCCCCCCCCC-CC--hhcHHHHHHHhcCCCCCCCCCCCeEEE
Q 046205 223 FTFCYDALHGVAG--AYAKRIFVEELGAQESSLLNCTPKEDFGGGHPD-PN--LTYAKELVARMGLGKSNTQDEPPEFGA 297 (365)
Q Consensus 223 ~kvvvd~~~Ga~~--~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~-p~--~~~l~~l~~~v~~~~~~a~~~~adlgi 297 (365)
+||++-+-|.... ..+... |++.|.+++- + +...++ +. ......+++.|. ..++|+||
T Consensus 1 MkIaig~Dhag~~lK~~I~~~-Lk~~g~~v~D---~------G~~~~~~~~dyp~~a~~va~~v~-------~~~~d~GI 63 (151)
T COG0698 1 MKIAIGSDHAGYELKEIIIDH-LKSKGYEVID---F------GTYTDEGSVDYPDYAKKVAEAVL-------NGEADLGI 63 (151)
T ss_pred CcEEEEcCcccHHHHHHHHHH-HHHCCCEEEe---c------cccCCCCCcchHHHHHHHHHHHH-------cCCCCeeE
Confidence 3566766665532 234455 6788888742 2 111122 11 124456777776 66899999
Q ss_pred eeCCCCCeeeEee
Q 046205 298 AADGDADRNMILG 310 (365)
Q Consensus 298 ~~D~DgDR~~~vd 310 (365)
..+|.|--+.+.-
T Consensus 64 liCGTGiG~~iaA 76 (151)
T COG0698 64 LICGTGIGMSIAA 76 (151)
T ss_pred EEecCChhHHHHh
Confidence 9999987665554
No 107
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=32.01 E-value=1.4e+02 Score=27.98 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=36.1
Q ss_pred CCceEEEecCCCCcH----HHHHHHHHHHcCCc--eeeeeccccCCCCCCCCCCCChhcHHHHHHHhc
Q 046205 221 PKFTFCYDALHGVAG----AYAKRIFVEELGAQ--ESSLLNCTPKEDFGGGHPDPNLTYAKELVARMG 282 (365)
Q Consensus 221 ~~~kvvvd~~~Ga~~----~~~~~i~l~~lg~~--v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~ 282 (365)
.++.|++|+.|..+. ..+... .-.+|++ ++ ..|.+||...+.+.-.=....+.+|.+.++
T Consensus 193 ~~~pV~~ds~Hs~G~r~~~~~~~~a-Ava~Ga~gl~i-E~H~t~d~a~~D~~~sl~p~~l~~lv~~i~ 258 (260)
T TIGR01361 193 THLPIIVDPSHAAGRRDLVIPLAKA-AIAAGADGLMI-EVHPDPEKALSDSKQQLTPEEFKRLVKELR 258 (260)
T ss_pred hCCCEEEcCCCCCCccchHHHHHHH-HHHcCCCEEEE-EeCCCccccCCcchhcCCHHHHHHHHHHHh
Confidence 378999999998771 233333 4578999 44 378888877643311112235555555543
No 108
>PF13362 Toprim_3: Toprim domain
Probab=31.94 E-value=1.4e+02 Score=22.86 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=32.5
Q ss_pred CCCeEEEEecCCCC--hHHHHHHHHHHHHHcCCEEEEe
Q 046205 54 RGATLVVSGDGRYY--SKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 54 ~~~~Vvvg~D~R~~--s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
..++|+|.-|+-.. ++..+..+++.|.+.|+.+..+
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~ 77 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIV 77 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEE
Confidence 34679999999999 9999999999999999999877
No 109
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=31.86 E-value=1.2e+02 Score=29.70 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=29.7
Q ss_pred CCCeEEEEe--cCCCChHHHHHHHHHHHHHcCCEEEEeCC-CCcccchHH
Q 046205 54 RGATLVVSG--DGRYYSKDAIQIITKMAAANGVRRVWIGQ-NGLLSTPAV 100 (365)
Q Consensus 54 ~~~~Vvvg~--D~R~~s~~~~~a~a~gL~s~G~~V~~~~~-~g~~ptP~~ 100 (365)
++.+|+|.+ |+...-...+++++..+...|++|+..+. .+..|.+.+
T Consensus 168 ~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~ 217 (335)
T PRK04523 168 RGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERY 217 (335)
T ss_pred CCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHH
Confidence 456777655 55443334567777777788999888855 455555443
No 110
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=30.55 E-value=2.3e+02 Score=26.01 Aligned_cols=60 Identities=8% Similarity=0.003 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchH
Q 046205 32 TQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPA 99 (365)
Q Consensus 32 ~~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~ 99 (365)
-||-.+...++..+......+.+.-.|.|-.= +. .+++..+|.+.|++|..+ ...+|.|-
T Consensus 160 sTpfAAQ~aae~aakka~~~GIk~V~V~vKGp----Gg--REtALRaL~~~GLkIt~I--~DvTpiPH 219 (233)
T PTZ00090 160 QSERCAYRIGENIAKKCRRLGIFAVDIKFRRI----MR--VETVLQAFYANGLQVTQI--IHEPRLPK 219 (233)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeCC----Ch--HHHHHHHHHHCCCEEEEE--EECCCCCc
Confidence 44544444445555554433322223444222 22 788899999999999988 36777773
No 111
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=30.54 E-value=2.6e+02 Score=21.80 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEE
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVW 88 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~ 88 (365)
.++|++.|.+-.+|.++++.+-+.+...|+++-.
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v 36 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKI 36 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEE
Confidence 3579999999999999999999999999998643
No 112
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=30.51 E-value=2e+02 Score=27.77 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=46.4
Q ss_pred CCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHh
Q 046205 54 RGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRER 107 (365)
Q Consensus 54 ~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~ 107 (365)
..+.|+||.=.-.-+..+.+.+...|..+|++|-+- .|+..|++++=|++..
T Consensus 31 ~~~~I~VgsK~~tE~~IL~~m~~~lle~~~~kv~~~--~~lG~t~v~~~Al~~G 82 (300)
T COG1732 31 AAKTIVVGSKIFTEQYILGNILKQLLEKNGIKVEDK--TGLGGTAVVRNALKSG 82 (300)
T ss_pred cCCCEEEecCCCcHHHHHHHHHHHHHHhcCCceeec--cCCCchHHHHHHHHcC
Confidence 356799999999999999999999999999999986 4899999999998865
No 113
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.50 E-value=1.9e+02 Score=26.32 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=39.1
Q ss_pred ceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCC-hhcHHHHHHHhcCCCCCCCCCCCeEEEeeCC
Q 046205 223 FTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPN-LTYAKELVARMGLGKSNTQDEPPEFGAAADG 301 (365)
Q Consensus 223 ~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~-~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~ 301 (365)
.++++-...-.-++++..+ ++++||++++ -.. |-. ...+.++.+.++ ++.++++. +
T Consensus 68 ~~~~amvS~s~DGEliA~~-l~kfG~~~IR--GSs----------~Kgg~~Alr~l~k~Lk--------~G~~i~it--p 124 (214)
T COG2121 68 KKIYAMVSPSRDGELIARL-LEKFGLRVIR--GSS----------NKGGISALRALLKALK--------QGKSIAIT--P 124 (214)
T ss_pred CcEEEEEcCCcCHHHHHHH-HHHcCceEEe--ccC----------CcchHHHHHHHHHHHh--------CCCcEEEc--C
Confidence 3455555555667899999 7999999763 111 111 346678888884 67888887 5
Q ss_pred CCCe
Q 046205 302 DADR 305 (365)
Q Consensus 302 DgDR 305 (365)
||=|
T Consensus 125 DgPk 128 (214)
T COG2121 125 DGPK 128 (214)
T ss_pred CCCC
Confidence 5544
No 114
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=30.38 E-value=2.3e+02 Score=21.15 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=36.6
Q ss_pred CceEEEecCCCCcHHHHHHHHHHHcCCceeeeeccccCCCCCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCC
Q 046205 222 KFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADG 301 (365)
Q Consensus 222 ~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~~~~~~d~~f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~ 301 (365)
++.++++..- - ++++.++ ++.+|++++. -... . --...+.++.+.++ ++.++++.-|+
T Consensus 11 ~~~~lvS~s~-D-Ge~ia~~-~~~~G~~~iR-GSs~----r------gg~~Alr~~~~~lk--------~G~~~~itpDG 68 (74)
T PF04028_consen 11 KIAALVSRSR-D-GELIARV-LERFGFRTIR-GSSS----R------GGARALREMLRALK--------EGYSIAITPDG 68 (74)
T ss_pred CEEEEEccCc-C-HHHHHHH-HHHcCCCeEE-eCCC----C------cHHHHHHHHHHHHH--------CCCeEEEeCCC
Confidence 4555555333 3 5799999 7999999764 1110 0 11356778888884 56788888554
No 115
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=30.30 E-value=2.5e+02 Score=21.46 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCEEEEe
Q 046205 74 IITKMAAANGVRRVWI 89 (365)
Q Consensus 74 a~a~gL~s~G~~V~~~ 89 (365)
-+...|.+.|++|..+
T Consensus 12 ~v~~~L~~~GyeVv~l 27 (80)
T PF03698_consen 12 NVKEALREKGYEVVDL 27 (80)
T ss_pred HHHHHHHHCCCEEEec
Confidence 4678899999999999
No 116
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=30.24 E-value=1.5e+02 Score=26.84 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=26.1
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEe
Q 046205 56 ATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 56 ~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
++|+|.-=+| |-.+++.+|..|++.|.+++++
T Consensus 40 gkv~V~G~Gk--SG~Igkk~Aa~L~s~G~~a~fv 71 (202)
T COG0794 40 GKVFVTGVGK--SGLIGKKFAARLASTGTPAFFV 71 (202)
T ss_pred CcEEEEcCCh--hHHHHHHHHHHHHccCCceEEe
Confidence 4566644443 7899999999999999999999
No 117
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=30.20 E-value=3.5e+02 Score=27.38 Aligned_cols=84 Identities=13% Similarity=0.032 Sum_probs=54.1
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCC--CC----cccchH------HHHHHHHhhcCCCCCcceeEEEe
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQ--NG----LLSTPA------VSAVIRERVGSDGSKATGAFILT 122 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~--~g----~~ptP~------~~~av~~~~~~~~~~~~gGI~IT 122 (365)
+-+|+|-+-+..++..+. ..|..-|++|+.+.. +| ..|-|. +.-.++.. +++-||.
T Consensus 173 ~~kivvd~~~G~~~~~~~----~il~~lg~~v~~~~~~~dg~F~~~~p~p~~~~l~~l~~~v~~~------~ad~Gia-- 240 (461)
T cd05800 173 GLKVVVDPMYGAGAGYLE----ELLRGAGVDVEEIRAERDPLFGGIPPEPIEKNLGELAEAVKEG------GADLGLA-- 240 (461)
T ss_pred CceEEEeCCCCCcHHHHH----HHHHHcCCCEEEeeCCcCCCCCCCCCCCCHHHHHHHHHHHHhc------CCCEEEE--
Confidence 346888777777766554 445677999987621 11 123332 44456665 7888886
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHHH
Q 046205 123 ASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYE 156 (365)
Q Consensus 123 aShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~ 156 (365)
++| +---+-+++++|..++++..-.|..
T Consensus 241 --~D~----DgDR~~vvd~~G~~l~~d~~~al~a 268 (461)
T cd05800 241 --TDG----DADRIGAVDEKGNFLDPNQILALLL 268 (461)
T ss_pred --ECC----CCCeEEEEeCCCceeCHHHHHHHHH
Confidence 576 5556667899999999886655544
No 118
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=28.61 E-value=3e+02 Score=23.81 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=47.8
Q ss_pred CCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCC
Q 046205 64 GRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNG 143 (365)
Q Consensus 64 ~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G 143 (365)
.|.++..|...+.+-+...|.+|+++ |-.| .++.-+...+. ..-.|+.|...|+| +-
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~~ifll---G~~~-~~~~~~~~~l~-----~~yP~l~ivg~~~g---~f----------- 85 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGKRIFLL---GGSE-EVLEKAAANLR-----RRYPGLRIVGYHHG---YF----------- 85 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCCeEEEE---eCCH-HHHHHHHHHHH-----HHCCCeEEEEecCC---CC-----------
Confidence 57788999999999999999999999 6554 33333333441 23357888877777 21
Q ss_pred CCCChhhHHHHHHHhhh
Q 046205 144 GPAPEGITDKIYENTKT 160 (365)
Q Consensus 144 ~~i~~~~~~~Ie~~~~~ 160 (365)
++++.++|.+.++.
T Consensus 86 ---~~~~~~~i~~~I~~ 99 (172)
T PF03808_consen 86 ---DEEEEEAIINRINA 99 (172)
T ss_pred ---ChhhHHHHHHHHHH
Confidence 45566666666554
No 119
>PF04069 OpuAC: Substrate binding domain of ABC-type glycine betaine transport system; InterPro: IPR007210 This domain is a part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. It is often found in integral membrane proteins or proteins predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis []. OpuBC is closely related and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine []. L-carnitine is important for osmoregulation in Listeria monocytogenes. This domain is found also in proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).; GO: 0005215 transporter activity, 0005488 binding, 0006810 transport; PDB: 3R6U_A 3TMG_C 3MAM_A 1SW5_C 1SW4_B 1SW1_A 1SW2_A 3O66_A 1R9Q_A 1R9L_A ....
Probab=27.76 E-value=1.5e+02 Score=27.17 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=40.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHh
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRER 107 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~ 107 (365)
+|+||.-+-..+..+++.++..|...|+.|... +.-.++.+.-++..-
T Consensus 2 ~I~ig~~~w~~~~~~a~i~~~~Le~~G~~v~~~---~~~~~~~~~~al~~G 49 (257)
T PF04069_consen 2 PIVIGSKNWTESQILAEIYAQLLEAAGYVVEVV---NLGSTPVIFAALASG 49 (257)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTEEEEEE---EESSHHHHHHHHHTT
T ss_pred eEEEecCCCcHHHHHHHHHHHHHHHCCCeEEEe---cCCchHHHHHHHHCC
Confidence 689999999999999999999999999988877 666667777776553
No 120
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=27.64 E-value=3.7e+02 Score=24.62 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=53.4
Q ss_pred eEEEEec-------CCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCCCC
Q 046205 57 TLVVSGD-------GRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGG 129 (365)
Q Consensus 57 ~Vvvg~D-------~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp~~ 129 (365)
-++|+.. .|..+..=++.++..|.+.|++|... .-...-.+.-+++.+-..++.+.+..+++-+||--
T Consensus 12 aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~---~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG~-- 86 (243)
T cd00032 12 ALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVK---NNLTAEEILEELKEFASPDHSDSDSFVCVILSHGE-- 86 (243)
T ss_pred EEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEe---CCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCCC--
Confidence 3666764 46667777999999999999999988 55666666767766521134566777888889954
Q ss_pred CCCCCeEEEEcC
Q 046205 130 PNEDFGIKYNMD 141 (365)
Q Consensus 130 ~~~~nGiK~~~~ 141 (365)
+ +.+.-.|.
T Consensus 87 --~-~~l~~~D~ 95 (243)
T cd00032 87 --E-GGIYGTDG 95 (243)
T ss_pred --C-CEEEEecC
Confidence 2 55554443
No 121
>PRK09271 flavodoxin; Provisional
Probab=27.51 E-value=1.3e+02 Score=25.73 Aligned_cols=33 Identities=9% Similarity=0.243 Sum_probs=26.3
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHHcCCEEEEe
Q 046205 57 TLVVSGDGRY-YSKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 57 ~Vvvg~D~R~-~s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
+|+|-+.+.. +.+.+++.++.+|.+.|++|...
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~ 35 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGHEVDWV 35 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEE
Confidence 4666666664 77999999999999999987544
No 122
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=27.40 E-value=5.7e+02 Score=24.70 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=51.2
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCC------CcccchH-------HHHHHHHhhcCCCCCcceeEEE
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQN------GLLSTPA-------VSAVIRERVGSDGSKATGAFIL 121 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~------g~~ptP~-------~~~av~~~~~~~~~~~~gGI~I 121 (365)
+-+|+|-+-+...+..+. ..|.+.|++|+.+... +..|-|. +.-.++.. +++-|+.
T Consensus 112 ~~kvvvD~~~G~~~~~~~----~ll~~lg~~v~~~n~~~d~~F~~~~p~p~~~~~l~~l~~~v~~~------~adlG~a- 180 (355)
T cd03084 112 KFKVVVDSVNGVGGPIAP----QLLEKLGAEVIPLNCEPDGNFGNINPDPGSETNLKQLLAVVKAE------KADFGVA- 180 (355)
T ss_pred CCEEEEECCCchHHHHHH----HHHHHcCCcEEEEcCcCCCCCCCCCCCCCchhhHHHHHHHHHhc------CCCEEEE-
Confidence 346777666655554444 4445568999877321 1222233 44556666 7888886
Q ss_pred eCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHH
Q 046205 122 TASHNPGGPNEDFGIKYNMDNGGPAPEGITDKI 154 (365)
Q Consensus 122 TaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~I 154 (365)
++| +---+-+++++|..++++..-.+
T Consensus 181 ---~Dg----DgDRl~~vd~~G~~l~~d~~~al 206 (355)
T cd03084 181 ---FDG----DADRLIVVDENGGFLDGDELLAL 206 (355)
T ss_pred ---EcC----CCceeEEECCCCceeCHhHHHHH
Confidence 676 55567789999999998755433
No 123
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=27.30 E-value=76 Score=25.99 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=25.3
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHHcCCEEEEe
Q 046205 57 TLVVSGDGRYYSKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 57 ~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
+|+|+.|....|+...+-++......|.+++.+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll 33 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLV 33 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEE
Confidence 488899988888877777776666667777776
No 124
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=27.04 E-value=1.5e+02 Score=25.97 Aligned_cols=66 Identities=14% Similarity=0.048 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhhc--ccCCCeE-EEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHh
Q 046205 36 YLHNFVQSTFNALSAE--KVRGATL-VVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRER 107 (365)
Q Consensus 36 ~~~~l~~a~g~~l~~~--~~~~~~V-vvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~ 107 (365)
+...++.+++..|.++ +..+..| +|=-|+-..+..-+.+.+.-|...|+.+... .||+-.|.....
T Consensus 26 ~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~~ae~f~~~~V~~tit------vtpcWcy~~etm 94 (171)
T PF07881_consen 26 QTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAACAEKFKREGVGVTIT------VTPCWCYGSETM 94 (171)
T ss_dssp HHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHHHHHHHHCCTEEEEEE------EESS---HHHHS
T ss_pred HHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHHHHHHHHHcCCCEEEE------EEeeeecchhhh
Confidence 3555666666666543 2234554 5556777888888999999999999998755 788888876554
No 125
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=26.76 E-value=6.8e+02 Score=25.36 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=50.1
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCC--Ccccc-----h---HHHHHHHHhhcCCCCCcceeEEEeCC
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQN--GLLST-----P---AVSAVIRERVGSDGSKATGAFILTAS 124 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~--g~~pt-----P---~~~~av~~~~~~~~~~~~gGI~ITaS 124 (365)
+-+|+|-+-+-..+..+. ..|...|++|+.+... |.-|. + .+.-.++.. +++-||.
T Consensus 188 ~~kVvvD~~nG~~~~~~~----~ll~~LG~~v~~l~~~~dg~~~~~~~~~~~l~~l~~~v~~~------~adlGia---- 253 (465)
T PRK14317 188 GVKIVLDLAWGAAVACAP----EVFKALGAEVICLHDQPDGDRINVNCGSTHLEPLQAAVLEH------GADMGFA---- 253 (465)
T ss_pred CCEEEEECCCchHHHHHH----HHHHHcCCeEEEEecccCCCCCCCCCchHhHHHHHHHHHhc------CCCEEEE----
Confidence 346777666655555544 4456779999877211 11111 1 334456665 7888886
Q ss_pred CCCCCCCCCCeEEEEcCCCCCCChhhHHHH
Q 046205 125 HNPGGPNEDFGIKYNMDNGGPAPEGITDKI 154 (365)
Q Consensus 125 hnp~~~~~~nGiK~~~~~G~~i~~~~~~~I 154 (365)
++| +---+-+++++|..++++..-.+
T Consensus 254 ~Dg----DgDR~~~vd~~G~~i~~d~l~~l 279 (465)
T PRK14317 254 FDG----DADRVLAVDGQGRVVDGDHILYL 279 (465)
T ss_pred ECC----CCcEEEEECCCCCEEChhHHHHH
Confidence 566 44455668999999998765444
No 126
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=26.35 E-value=2.8e+02 Score=23.35 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHhhhcc--cCCCeEE-EEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhcC
Q 046205 34 PNYLHNFVQSTFNALSAEK--VRGATLV-VSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGS 110 (365)
Q Consensus 34 ~~~~~~l~~a~g~~l~~~~--~~~~~Vv-vg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~~ 110 (365)
|.++.....++-..+...+ .+++.|+ +|| |....+.++.-|...|..|.... .-|+-+.-++++
T Consensus 5 ~~~~p~t~~a~~~ll~~~~~~~~gk~v~VvGr-----s~~vG~pla~lL~~~gatV~~~~----~~t~~l~~~v~~---- 71 (140)
T cd05212 5 PLFVSPVAKAVKELLNKEGVRLDGKKVLVVGR-----SGIVGAPLQCLLQRDGATVYSCD----WKTIQLQSKVHD---- 71 (140)
T ss_pred CcccccHHHHHHHHHHHcCCCCCCCEEEEECC-----CchHHHHHHHHHHHCCCEEEEeC----CCCcCHHHHHhh----
Confidence 4444444555555554332 3566654 465 45566666777778999999883 234445555543
Q ss_pred CCCCcceeEEEeCCCCC
Q 046205 111 DGSKATGAFILTASHNP 127 (365)
Q Consensus 111 ~~~~~~gGI~ITaShnp 127 (365)
+| |.|+|.--|
T Consensus 72 ----AD--IVvsAtg~~ 82 (140)
T cd05212 72 ----AD--VVVVGSPKP 82 (140)
T ss_pred ----CC--EEEEecCCC
Confidence 44 777774433
No 127
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=25.90 E-value=7e+02 Score=25.17 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=47.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCC-----Ccccch------HHHHHHHHhhcCCCCCcceeEEEeCCCC
Q 046205 58 LVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQN-----GLLSTP------AVSAVIRERVGSDGSKATGAFILTASHN 126 (365)
Q Consensus 58 Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~-----g~~ptP------~~~~av~~~~~~~~~~~~gGI~ITaShn 126 (365)
.-|..|.-..+ -...+...|...|++|+.+... +..|.| .+.-.++.. +++-||. ++
T Consensus 166 ~kVvvD~~~G~--~~~~~~~il~~lg~~v~~i~~~~d~~f~~~p~p~~~~l~~l~~~v~~~------~adlGia----~D 233 (449)
T PRK14321 166 YTVVVDSGNGA--GSILSPYLQRELGNKVISLNSHPSGFFVRELEPNAKSLSMLAKTVKVL------KADVGIA----HD 233 (449)
T ss_pred CEEEEECCCch--HHHHHHHHHHHcCCEEEEeCccCCCCCCCCCCCchhhHHHHHHHHHHC------CCCEEEE----ec
Confidence 33444444333 2334455566779999877211 111333 234456666 7888886 67
Q ss_pred CCCCCCCCeEEEEcCCCCCCChhhHHH
Q 046205 127 PGGPNEDFGIKYNMDNGGPAPEGITDK 153 (365)
Q Consensus 127 p~~~~~~nGiK~~~~~G~~i~~~~~~~ 153 (365)
| +---+-+++++|..+.++..-.
T Consensus 234 g----D~DR~~vvd~~G~~~~~d~~~~ 256 (449)
T PRK14321 234 G----DADRIGVVDDQGNFVEYEVMLS 256 (449)
T ss_pred C----CCceEEEECCCCCEeChHHHHH
Confidence 7 5566778899999998865433
No 128
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.42 E-value=2e+02 Score=26.91 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=34.1
Q ss_pred CCceEEEecCCCCcH-H---HHHHHHHHHcCCc--eeeeeccccCCCCCCCCCCCC-hhcHHHHHHHh
Q 046205 221 PKFTFCYDALHGVAG-A---YAKRIFVEELGAQ--ESSLLNCTPKEDFGGGHPDPN-LTYAKELVARM 281 (365)
Q Consensus 221 ~~~kvvvd~~~Ga~~-~---~~~~i~l~~lg~~--v~~~~~~~~d~~f~~~~p~p~-~~~l~~l~~~v 281 (365)
.++.|++|+.|..+. . .+... .-.+|++ ++ ..|.+|+.... -.|+-. .+.+.+|.+.+
T Consensus 183 ~~lPVivd~SHs~G~r~~v~~~a~A-AvA~GAdGl~I-E~H~~P~~A~s-D~~q~l~~~~l~~l~~~~ 247 (250)
T PRK13397 183 TDLPIIVDVSHSTGRRDLLLPAAKI-AKAVGANGIMM-EVHPDPDHALS-DAAQQIDYKQLEQLGQEL 247 (250)
T ss_pred hCCCeEECCCCCCcccchHHHHHHH-HHHhCCCEEEE-EecCCcccccC-chhhhCCHHHHHHHHHHh
Confidence 468999999998874 1 33333 3578999 54 36777765432 123322 23455555544
No 129
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=25.23 E-value=1.8e+02 Score=28.38 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=27.4
Q ss_pred CCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHH
Q 046205 54 RGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAV 100 (365)
Q Consensus 54 ~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~ 100 (365)
++.+|++--|.+. + .+++++..+...|++|+..+..++.|.+.+
T Consensus 155 ~gl~ia~vGD~~~-~--v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~ 198 (334)
T PRK01713 155 SEISYVYIGDARN-N--MGNSLLLIGAKLGMDVRICAPKALLPEASL 198 (334)
T ss_pred CCcEEEEECCCcc-C--HHHHHHHHHHHcCCEEEEECCchhcCCHHH
Confidence 4456666667643 2 566666677777777777765566665543
No 130
>PRK10646 ADP-binding protein; Provisional
Probab=25.12 E-value=2.3e+02 Score=24.40 Aligned_cols=43 Identities=7% Similarity=-0.076 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHH
Q 046205 33 QPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMA 79 (365)
Q Consensus 33 ~~~~~~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL 79 (365)
+++-..++|+.+|..+. ++..|++.-|--..=.-|.++++++|
T Consensus 10 s~~~t~~l~~~la~~l~----~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 10 DEQATLDLGARVAKACD----GATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CHHHHHHHHHHHHHhCC----CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44556677888877765 44456667776666666777777766
No 131
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=24.96 E-value=4.7e+02 Score=22.88 Aligned_cols=27 Identities=7% Similarity=0.004 Sum_probs=15.2
Q ss_pred CCCeEEEEcCCCCCCChhhHHHHHHHh
Q 046205 132 EDFGIKYNMDNGGPAPEGITDKIYENT 158 (365)
Q Consensus 132 ~~nGiK~~~~~G~~i~~~~~~~Ie~~~ 158 (365)
..+|+.++...+..-+....+.|...+
T Consensus 99 ~~~G~ev~~~~~~~~s~~lA~~i~~~l 125 (189)
T TIGR02883 99 KYSGAQTFYYGNSEENKRLAKFIQDEL 125 (189)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHH
Confidence 578998888654433333344444443
No 132
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=24.88 E-value=7.1e+02 Score=24.90 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCC--CCcccc--------hHHHHHHHHh
Q 046205 38 HNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQ--NGLLST--------PAVSAVIRER 107 (365)
Q Consensus 38 ~~l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~--~g~~pt--------P~~~~av~~~ 107 (365)
..+...+-+.+......+-+|+|-+-+...+..+. ..|...|++|+.+.. +|.-|. -.+.-.++..
T Consensus 152 ~~Y~~~l~~~~~~~~~~~lkVvvD~~nG~~~~~~~----~ll~~lg~~v~~in~~~dg~~~~~~~~~~~~~~l~~~v~~~ 227 (434)
T cd05802 152 GRYIEFLKSTFPKDLLSGLKIVLDCANGAAYKVAP----EVFRELGAEVIVINNAPDGLNINVNCGSTHPESLQKAVLEN 227 (434)
T ss_pred HHHHHHHHHhcCccccCCCEEEEECCCchHHHHHH----HHHHHcCCeEEEecCCCCCCCCCCCCCccCHHHHHHHHHhc
Confidence 33444444444321012346777666655555544 444556999987732 111110 1245566776
Q ss_pred hcCCCCCcceeEEEeCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHH
Q 046205 108 VGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKI 154 (365)
Q Consensus 108 ~~~~~~~~~gGI~ITaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~I 154 (365)
+++-||. ++| +---+-+++++|..++++..-.+
T Consensus 228 ------~adlGia----~Dg----DgDR~~~vd~~G~~i~~d~~~~l 260 (434)
T cd05802 228 ------GADLGIA----FDG----DADRVIAVDEKGNIVDGDQILAI 260 (434)
T ss_pred ------CCCEEEE----EcC----CCceEEEECCCCCEeCHHHHHHH
Confidence 8888886 565 33445678999999998865444
No 133
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=24.79 E-value=1.4e+02 Score=24.54 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHHHcCCEEEEe
Q 046205 66 YYSKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 66 ~~s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
-+++.+|+.++++|.+.|++|..+
T Consensus 8 G~te~~A~~ia~~l~~~g~~~~~~ 31 (143)
T PF00258_consen 8 GNTEKMAEAIAEGLRERGVEVRVV 31 (143)
T ss_dssp SHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCceeee
Confidence 468999999999999999876655
No 134
>PHA02031 putative DnaG-like primase
Probab=24.47 E-value=2.1e+02 Score=27.00 Aligned_cols=47 Identities=11% Similarity=-0.037 Sum_probs=35.0
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeC-CCCcccchHHHH
Q 046205 56 ATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIG-QNGLLSTPAVSA 102 (365)
Q Consensus 56 ~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~-~~g~~ptP~~~~ 102 (365)
+.|++.+|+-..++.-+...+..|.+.|++|..+. ..|.=|=-.+.-
T Consensus 207 ~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~lP~g~DPDd~ir~ 254 (266)
T PHA02031 207 PRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIITPDGFDPKDLERE 254 (266)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEECCCCCChHHHHHH
Confidence 57999999999999999999999999998776541 124444444443
No 135
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=24.36 E-value=5.3e+02 Score=24.98 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhcccCCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEE
Q 046205 40 FVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVW 88 (365)
Q Consensus 40 l~~a~g~~l~~~~~~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~ 88 (365)
.+.+++.++.++.. .++|+|=++....++.+.+++.+.|.+.|.++..
T Consensus 134 q~~~~~~~l~~~~~-~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~ 181 (366)
T COG0683 134 QAAAAADYLVKKGG-KKRVAIIGDDYAYGEGLADAFKAALKALGGEVVV 181 (366)
T ss_pred HHHHHHHHHHHhcC-CcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEE
Confidence 45667777765432 2589999999999999999999999999997443
No 136
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=24.18 E-value=7.4e+02 Score=24.88 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=49.4
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCC-----CCcccchH------HHHHHHHhhcCCCCCcceeEEEeCC
Q 046205 56 ATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQ-----NGLLSTPA------VSAVIRERVGSDGSKATGAFILTAS 124 (365)
Q Consensus 56 ~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~-----~g~~ptP~------~~~av~~~~~~~~~~~~gGI~ITaS 124 (365)
-+|+|-+-+...+.. +...|.+.|++|..+.. ++..|.|. +.-.++.. +++-||.
T Consensus 174 lkVvvd~~~G~~~~~----~~~ll~~lg~~v~~~~~~~d~~F~~~p~p~~~~l~~l~~~v~~~------~adlgi~---- 239 (445)
T cd05803 174 FKVAVDSVNGAGGLL----IPRLLEKLGCEVIVLNCEPTGLFPHTPEPLPENLTQLCAAVKES------GADVGFA---- 239 (445)
T ss_pred CEEEEECCCCcHHHH----HHHHHHHcCCEEEEeCCcCCCCCCCCCCCChHHHHHHHHHHHhc------CCCEEEe----
Confidence 356665555544433 45567778999876621 11233332 33345565 8888997
Q ss_pred CCCCCCCCCCeEEEEcCCCCCCChhhHHHH
Q 046205 125 HNPGGPNEDFGIKYNMDNGGPAPEGITDKI 154 (365)
Q Consensus 125 hnp~~~~~~nGiK~~~~~G~~i~~~~~~~I 154 (365)
++| +---+-+++++|..++++..-.+
T Consensus 240 ~D~----DgDR~~ivd~~G~~i~~d~~~al 265 (445)
T cd05803 240 VDP----DADRLALVDEDGRPIGEEYTLAL 265 (445)
T ss_pred eCC----CCceEEEECCCCCCcChHHHHHH
Confidence 566 44556679999999988754443
No 137
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.03 E-value=6.3e+02 Score=23.98 Aligned_cols=65 Identities=11% Similarity=0.027 Sum_probs=42.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCC
Q 046205 58 LVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASH 125 (365)
Q Consensus 58 Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaSh 125 (365)
.+|--..++.|..+.+.-...+.+.|++..+..-...++.-.+.-.+..+|.. ..-.||+||..|
T Consensus 37 ~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d---~~v~Gi~VqlPl 101 (283)
T PRK14192 37 ATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNAN---PDVHGILLQHPV 101 (283)
T ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC---CCCCEEEEeCCC
Confidence 45555566799999999999999999998776111123444455667777410 113478888655
No 138
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=23.72 E-value=1.1e+02 Score=30.79 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=28.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHHHHcCCceeee
Q 046205 220 SPKFTFCYDALHGVAGAYAKRIFVEELGAQESSL 253 (365)
Q Consensus 220 ~~~~kvvvd~~~Ga~~~~~~~i~l~~lg~~v~~~ 253 (365)
+.++||+ |.....++.+...+ |..||++|+.+
T Consensus 12 L~GirVl-dls~~~aGP~a~~l-LAdlGAeVIKV 43 (405)
T PRK03525 12 LAGLRVV-FSGIEIAGPFAGQM-FAEWGAEVIWI 43 (405)
T ss_pred CCCCEEE-EecchhHHHHHHHH-HHHcCCcEEEE
Confidence 3688887 99999999999999 89999999874
No 139
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=23.02 E-value=2.2e+02 Score=27.89 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=26.6
Q ss_pred CCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHH
Q 046205 54 RGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAV 100 (365)
Q Consensus 54 ~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~ 100 (365)
++.+|++--|.+. . .+++++..+...|++++..+..++.|.+.+
T Consensus 155 ~g~~ia~vGD~~~--~-v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~ 198 (336)
T PRK03515 155 NEMTLAYAGDARN--N-MGNSLLEAAALTGLDLRLVAPKACWPEAAL 198 (336)
T ss_pred CCCEEEEeCCCcC--c-HHHHHHHHHHHcCCEEEEECCchhcCcHHH
Confidence 3455665556533 1 556666666667777777766666666544
No 140
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=22.79 E-value=2.1e+02 Score=20.75 Aligned_cols=34 Identities=21% Similarity=0.053 Sum_probs=30.5
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEe
Q 046205 56 ATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 56 ~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
+.|+|..|+-..++..++.+.+.+.+.|+.+...
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~i~ 77 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALGGRVRVP 77 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 6899999999999999999999999998887754
No 141
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=22.58 E-value=7.9e+02 Score=24.63 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=53.3
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCC--CC----cccchH-------HHHHHHHhhcCCCCCcceeEEE
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQ--NG----LLSTPA-------VSAVIRERVGSDGSKATGAFIL 121 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~--~g----~~ptP~-------~~~av~~~~~~~~~~~~gGI~I 121 (365)
+-+|++-+-+...+..+. ..|...|++|+.+.. +| ..|.|. +.-.++.. +++-||.
T Consensus 163 ~lkVvvd~~~G~~~~~~~----~ll~~lG~~v~~i~~~~d~~F~~~~p~p~~~~~l~~l~~~v~~~------~adlgia- 231 (443)
T cd03089 163 PLKVVVDAGNGAAGPIAP----QLLEALGCEVIPLFCEPDGTFPNHHPDPTDPENLEDLIAAVKEN------GADLGIA- 231 (443)
T ss_pred CCeEEEECCCCchHHHHH----HHHHHCCCEEEEecCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc------CCCEEEE-
Confidence 446777666665555544 445567999887731 11 245553 33446666 8888986
Q ss_pred eCCCCCCCCCCCCeEEEEcCCCCCCChhhHHHHH
Q 046205 122 TASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIY 155 (365)
Q Consensus 122 TaShnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie 155 (365)
++| +---+-+++++|..++++..-.|-
T Consensus 232 ---~D~----DaDR~~ivd~~G~~l~~d~~~~ll 258 (443)
T cd03089 232 ---FDG----DGDRLGVVDEKGEIIWGDRLLALF 258 (443)
T ss_pred ---ecC----CcceeEEECCCCcEeCHHHHHHHH
Confidence 577 556667789999999988655543
No 142
>PRK05568 flavodoxin; Provisional
Probab=22.43 E-value=4.3e+02 Score=21.51 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=26.0
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHHcCCEEEEe
Q 046205 57 TLVVSGDGR-YYSKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 57 ~Vvvg~D~R-~~s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
+|+|-|.+. .+.+.+++++++++.+.|++|..+
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~ 36 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLL 36 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEE
Confidence 456656555 578999999999999999886665
No 143
>PRK05569 flavodoxin; Provisional
Probab=22.40 E-value=4.1e+02 Score=21.64 Aligned_cols=33 Identities=9% Similarity=-0.141 Sum_probs=25.6
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHHcCCEEEEe
Q 046205 57 TLVVSGDGR-YYSKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 57 ~Vvvg~D~R-~~s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
+|+|-+.+. -+++.+++++++++.+.|++|...
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~ 36 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIK 36 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 456655554 577999999999999999877655
No 144
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=22.32 E-value=2.3e+02 Score=27.62 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=29.6
Q ss_pred CCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHH
Q 046205 54 RGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAV 100 (365)
Q Consensus 54 ~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~ 100 (365)
++.+|++--|.+. . .+++++.++...|++|+..+..+..|.+.+
T Consensus 154 ~g~~va~vGd~~~--~-v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~ 197 (331)
T PRK02102 154 KGLKLAYVGDGRN--N-MANSLMVGGAKLGMDVRICAPKELWPEEEL 197 (331)
T ss_pred CCCEEEEECCCcc--c-HHHHHHHHHHHcCCEEEEECCcccccCHHH
Confidence 4566766667753 2 677777777788888888866666665433
No 145
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=22.10 E-value=8.2e+02 Score=24.62 Aligned_cols=82 Identities=20% Similarity=0.086 Sum_probs=51.6
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCC--Ccc--cch------HHHHHHHHhhcCCCCCcceeEEEeCC
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQN--GLL--STP------AVSAVIRERVGSDGSKATGAFILTAS 124 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~--g~~--ptP------~~~~av~~~~~~~~~~~~gGI~ITaS 124 (365)
+-+|+|-+-+-..+..+. ..|...|++|+.+... |.- +.| .+.-.++.. +++-||.
T Consensus 175 ~~kVvvD~~nG~~~~~~~----~ll~~lG~~v~~in~~~dg~~~~~~~~~~~l~~l~~~v~~~------~adlGia---- 240 (448)
T PRK14318 175 GLKVVVDCAHGAASGVAP----EAYRAAGADVIAINADPDGLNINDGCGSTHLEQLQAAVVAH------GADLGLA---- 240 (448)
T ss_pred CCEEEEECCCchHHHHHH----HHHHHcCCEEEEeccCCCCCCCCCCCCCCCHHHHHHHHHhc------CCCEEEE----
Confidence 456777766655555444 3445669999877321 110 111 245567776 8888885
Q ss_pred CCCCCCCCCCeEEEEcCCCCCCChhhHHHH
Q 046205 125 HNPGGPNEDFGIKYNMDNGGPAPEGITDKI 154 (365)
Q Consensus 125 hnp~~~~~~nGiK~~~~~G~~i~~~~~~~I 154 (365)
++| +---+-+++++|..++++..-.+
T Consensus 241 ~Dg----D~DR~~~vd~~G~~l~~d~~~~l 266 (448)
T PRK14318 241 HDG----DADRCLAVDANGNVVDGDQIMAI 266 (448)
T ss_pred ecC----CCceEEEECCCCcEeCHHHHHHH
Confidence 677 55556788999999998765443
No 146
>PRK04017 hypothetical protein; Provisional
Probab=22.07 E-value=1.6e+02 Score=24.82 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=31.3
Q ss_pred CCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEE
Q 046205 54 RGATLVVSGDGRYYSKDAIQIITKMAAANGVRRV 87 (365)
Q Consensus 54 ~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~ 87 (365)
..+.|+|-.|.-..++.+++-+..-|.+.|++|-
T Consensus 64 ~~r~VIILTD~D~~GekIr~~l~~~l~~~G~~vd 97 (132)
T PRK04017 64 RGKEVIILTDFDRKGEELAKKLSEYLQGYGIKVD 97 (132)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhCCCCcc
Confidence 3568999999999999999999999999999975
No 147
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=21.98 E-value=83 Score=31.12 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=30.0
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEE
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRV 87 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~ 87 (365)
-++|+|+.|.-+.++.+++-+.+-|.++|++|.
T Consensus 67 i~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 67 ISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVN 99 (360)
T ss_pred CCEEEEEECCCCCCCccchHHHHHHHHCCCEEE
Confidence 368999999999999999999999999999994
No 148
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=21.60 E-value=3e+02 Score=25.33 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=32.2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHh
Q 046205 56 ATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRER 107 (365)
Q Consensus 56 ~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~ 107 (365)
.+|++|.=.-..=.-=++.++.-|.++|++|+|+++ -+|.--+.=.++++
T Consensus 105 g~vVigtveGDvHdIGk~iV~~ml~~aGfevidLG~--dvP~e~fve~a~e~ 154 (227)
T COG5012 105 GKVVIGTVEGDVHDIGKNIVATMLEAAGFEVIDLGR--DVPVEEFVEKAKEL 154 (227)
T ss_pred ceEEEEeecccHHHHHHHHHHHHHHhCCcEEEecCC--CCCHHHHHHHHHHc
Confidence 567777644433334467788889999999999942 34444444445554
No 149
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=21.45 E-value=2.4e+02 Score=24.44 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=40.1
Q ss_pred cCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeEEEeCCCCC
Q 046205 63 DGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNP 127 (365)
Q Consensus 63 D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI~ITaShnp 127 (365)
-.|..+..|...+.+-....|.+|+++ |..|.-.-..+-+-. ..-.|+.|...|+|
T Consensus 26 ~~r~~g~dl~~~ll~~~~~~~~~v~ll---G~~~~~~~~~~~~l~------~~yp~l~i~g~~~g 81 (171)
T cd06533 26 PERVTGSDLMPALLELAAQKGLRVFLL---GAKPEVLEKAAERLR------ARYPGLKIVGYHHG 81 (171)
T ss_pred CcccCcHHHHHHHHHHHHHcCCeEEEE---CCCHHHHHHHHHHHH------HHCCCcEEEEecCC
Confidence 356788888999999999999999999 766554444432222 33467888887777
No 150
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=20.82 E-value=1.7e+02 Score=26.86 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=30.9
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEe
Q 046205 56 ATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWI 89 (365)
Q Consensus 56 ~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~ 89 (365)
+.|++++|+-..++..+.-++..|...|++|..+
T Consensus 155 ~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv 188 (218)
T TIGR00646 155 EKIFICFDNDFAGKNAAANLEEILKKAGFITKVI 188 (218)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 5799999999999999999999999999997655
No 151
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=20.51 E-value=8.8e+02 Score=24.40 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=51.9
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCC--CCccc-------ch-HHHHHHHHhhcCCCCCcceeEEEeCC
Q 046205 55 GATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQ--NGLLS-------TP-AVSAVIRERVGSDGSKATGAFILTAS 124 (365)
Q Consensus 55 ~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~--~g~~p-------tP-~~~~av~~~~~~~~~~~~gGI~ITaS 124 (365)
+-+|+|-+-+-..+..+ ...|...|++|+.+.. +|.-| .| .+.-.++.. +++-||.
T Consensus 177 ~~kVvvD~~~Ga~~~~~----~~il~~lg~~v~~~~~~~dg~~~~~~~~~~~~~~l~~~v~~~------~adlGia---- 242 (450)
T PRK14314 177 GLKIVLDCANGAAYKVA----PAVFEELGAEVICIGVEPNGLNINAGCGSLHPEVIAKAVIEH------GADLGIA---- 242 (450)
T ss_pred CCEEEEECCCchHHHHH----HHHHHHcCCeEEEeccCCCCCCCCCCCCCCCHHHHHHHHHhc------CCCeEEE----
Confidence 34687766554444433 3455677999987621 11111 11 355667776 8999987
Q ss_pred CCCCCCCCCCeEEEEcCCCCCCChhhHHHHHH
Q 046205 125 HNPGGPNEDFGIKYNMDNGGPAPEGITDKIYE 156 (365)
Q Consensus 125 hnp~~~~~~nGiK~~~~~G~~i~~~~~~~Ie~ 156 (365)
++| +---+-+++++|..++++..-.+-.
T Consensus 243 ~Dg----DgDR~~~vd~~G~~i~~d~~~al~~ 270 (450)
T PRK14314 243 LDG----DADRLIVVDEKGHIVDGDQIMAICA 270 (450)
T ss_pred EcC----CCceEEEECCCCcCcCHHHHHHHHH
Confidence 566 4455558899999999886544433
No 152
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=20.46 E-value=2.4e+02 Score=27.54 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHH
Q 046205 54 RGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAV 100 (365)
Q Consensus 54 ~~~~Vvvg~D~R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~ 100 (365)
++.+|++--|.+. ..+++++..+...|++|+..+..+..|.+.+
T Consensus 154 ~g~kia~vGD~~~---~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~ 197 (332)
T PRK04284 154 KDIKFTYVGDGRN---NVANALMQGAAIMGMDFHLVCPKELNPDDEL 197 (332)
T ss_pred CCcEEEEecCCCc---chHHHHHHHHHHcCCEEEEECCccccCCHHH
Confidence 4567777668642 2567777777788888888866666665544
No 153
>KOG2451 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=20.16 E-value=97 Score=30.93 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=37.1
Q ss_pred CCChHHHHHHHHHHHHHcCCEEEEeCCCCcccchHHHHHHHHhhcCCCCCcceeE--EEeCCCCC
Q 046205 65 RYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAF--ILTASHNP 127 (365)
Q Consensus 65 R~~s~~~~~a~a~gL~s~G~~V~~~~~~g~~ptP~~~~av~~~~~~~~~~~~gGI--~ITaShnp 127 (365)
.+-+.|+.+=+.+.| +.||.|+.- -.--||....|+.++- .+.+...|+ +||++||-
T Consensus 170 NFP~AMItRK~gAAL-AaGCTvVvk---Ps~~TPlsaLala~lA--~~AGiP~Gv~NVit~~~~~ 228 (503)
T KOG2451|consen 170 NFPAAMITRKAGAAL-AAGCTVVVK---PSEDTPLSALALAKLA--EEAGIPAGVLNVITADASN 228 (503)
T ss_pred CChHHHHHhHHHHHH-hcCceEEEc---cCCCCchHHHHHHHHH--HHcCCCCcceEEEecCCCC
Confidence 367889998888877 789999987 5666777777766650 001222233 57876644
No 154
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=20.12 E-value=3.3e+02 Score=26.92 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=26.2
Q ss_pred CCCCCCCCChhcHHHHHHHhcCCCCCCCCCCCeEEEeeCC
Q 046205 262 FGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADG 301 (365)
Q Consensus 262 f~~~~p~p~~~~l~~l~~~v~~~~~~a~~~~adlgi~~D~ 301 (365)
|.+..|||..+.+.+..+..+ +.++|+.+++=|
T Consensus 65 f~~v~~np~~~~v~~~~~~~~-------~~~~D~IiaiGG 97 (383)
T PRK09860 65 YDGTQPNPTTENVAAGLKLLK-------ENNCDSVISLGG 97 (383)
T ss_pred eCCCCCCcCHHHHHHHHHHHH-------HcCCCEEEEeCC
Confidence 344678999898888888887 788999887654
Done!