BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046207
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 568 bits (1464), Expect = e-162, Method: Compositional matrix adjust.
Identities = 264/403 (65%), Positives = 321/403 (79%), Gaps = 1/403 (0%)
Query: 55 EQVHITQGDHDGRSVIVSWVTPDEKYPNVVTHWEANSKRKHKTHSIIKTYRYFNYSSGYI 114
+QVHITQGD GR++I+SWVT DE + V +W + RK + TYR+FNYSSG+I
Sbjct: 22 QQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFI 81
Query: 115 HHATIKRLKYDTKYFYQLGSGNATRRFHFTTPPKVGPDVPYIFGIIGDLGQTYDSNQTFE 174
HH TI++LKY+TKY+Y++G N TRRF F TPP+ G DVPY FG+IGDLGQ++DSN T
Sbjct: 82 HHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLS 141
Query: 175 HYVSNPK-GQAVLFVGDLSYADDHPQHDNRRWDSWGRFVEKSTAYQAWIWVPGNHELDYA 233
HY +PK GQ VLFVGDLSYAD +P HDN RWD+WGRF E+S AYQ WIW GNHE+++A
Sbjct: 142 HYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFA 201
Query: 234 PEIGENVPFKPYTHRYHVPYRASQSTSPLWYSIKRASAYIIVLSSYSAYGKYTPQYAWLE 293
PEI E PFKP+++RYHVPY ASQSTSP WYSIKRASA+IIVLSSYSAYG+ TPQY WL+
Sbjct: 202 PEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLK 261
Query: 294 KELPKVNRAETPWLIVLLHSPWYNSNSYHYMEGESMRVAFESWFVQHKVDLVVAGHVHSY 353
KEL KV R+ETPWLIVL+HSP YNS ++H+MEGE+MR FE+WFV++KVD+V AGHVH+Y
Sbjct: 262 KELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAY 321
Query: 354 ERTNRFSNVQYNITNGISTPVKDPSAPVYLTIGDGGNIEGLADRYTEPQPSYSAYREASF 413
ER+ R SN+ Y ITNG+ TPVKD SAPVY+TIGD GN + +PQP YSA+REASF
Sbjct: 322 ERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASF 381
Query: 414 GHAMLEIKNRTHAHFTWHRNHDNEAVVADSQWLFNRYWYPEEE 456
GH M +IKNRTHAHF+W+RN D AV ADS W FNR+WYP ++
Sbjct: 382 GHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDD 424
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 568 bits (1464), Expect = e-162, Method: Compositional matrix adjust.
Identities = 264/403 (65%), Positives = 321/403 (79%), Gaps = 1/403 (0%)
Query: 55 EQVHITQGDHDGRSVIVSWVTPDEKYPNVVTHWEANSKRKHKTHSIIKTYRYFNYSSGYI 114
+QVHITQGD GR++I+SWVT DE + V +W + RK + TYR+FNYSSG+I
Sbjct: 20 QQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFI 79
Query: 115 HHATIKRLKYDTKYFYQLGSGNATRRFHFTTPPKVGPDVPYIFGIIGDLGQTYDSNQTFE 174
HH TI++LKY+TKY+Y++G N TRRF F TPP+ G DVPY FG+IGDLGQ++DSN T
Sbjct: 80 HHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLS 139
Query: 175 HYVSNPK-GQAVLFVGDLSYADDHPQHDNRRWDSWGRFVEKSTAYQAWIWVPGNHELDYA 233
HY +PK GQ VLFVGDLSYAD +P HDN RWD+WGRF E+S AYQ WIW GNHE+++A
Sbjct: 140 HYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFA 199
Query: 234 PEIGENVPFKPYTHRYHVPYRASQSTSPLWYSIKRASAYIIVLSSYSAYGKYTPQYAWLE 293
PEI E PFKP+++RYHVPY ASQSTSP WYSIKRASA+IIVLSSYSAYG+ TPQY WL+
Sbjct: 200 PEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLK 259
Query: 294 KELPKVNRAETPWLIVLLHSPWYNSNSYHYMEGESMRVAFESWFVQHKVDLVVAGHVHSY 353
KEL KV R+ETPWLIVL+HSP YNS ++H+MEGE+MR FE+WFV++KVD+V AGHVH+Y
Sbjct: 260 KELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAY 319
Query: 354 ERTNRFSNVQYNITNGISTPVKDPSAPVYLTIGDGGNIEGLADRYTEPQPSYSAYREASF 413
ER+ R SN+ Y ITNG+ TPVKD SAPVY+TIGD GN + +PQP YSA+REASF
Sbjct: 320 ERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASF 379
Query: 414 GHAMLEIKNRTHAHFTWHRNHDNEAVVADSQWLFNRYWYPEEE 456
GH M +IKNRTHAHF+W+RN D AV ADS W FNR+WYP ++
Sbjct: 380 GHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDD 422
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 263/403 (65%), Positives = 321/403 (79%), Gaps = 1/403 (0%)
Query: 55 EQVHITQGDHDGRSVIVSWVTPDEKYPNVVTHWEANSKRKHKTHSIIKTYRYFNYSSGYI 114
+QVHITQGD GR++I+SWVT DE + V +W + RK + TYR+FNYSSG+I
Sbjct: 28 QQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFI 87
Query: 115 HHATIKRLKYDTKYFYQLGSGNATRRFHFTTPPKVGPDVPYIFGIIGDLGQTYDSNQTFE 174
HH TI++LKY+TKY+Y++G N TRRF F TPP+ G DVPY FG+IGDLGQ++DSN T
Sbjct: 88 HHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLS 147
Query: 175 HYVSNPK-GQAVLFVGDLSYADDHPQHDNRRWDSWGRFVEKSTAYQAWIWVPGNHELDYA 233
HY +PK GQ VLFVGDLSYAD +P HDN RWD+WGRF E+S AYQ WIW GNHE+++A
Sbjct: 148 HYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFA 207
Query: 234 PEIGENVPFKPYTHRYHVPYRASQSTSPLWYSIKRASAYIIVLSSYSAYGKYTPQYAWLE 293
PEI E PFKP+++RYHVPY ASQSTSP WYSIKRASA+IIVLSSYSAYG+ TPQY WL+
Sbjct: 208 PEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLK 267
Query: 294 KELPKVNRAETPWLIVLLHSPWYNSNSYHYMEGESMRVAFESWFVQHKVDLVVAGHVHSY 353
KEL KV R+ETPWLIVL+HSP YNS ++H+MEGE+MR FE+WFV++KVD+V AGHVH+Y
Sbjct: 268 KELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAY 327
Query: 354 ERTNRFSNVQYNITNGISTPVKDPSAPVYLTIGDGGNIEGLADRYTEPQPSYSAYREASF 413
ER+ R SN+ Y IT+G+ TPVKD SAPVY+TIGD GN + +PQP YSA+REASF
Sbjct: 328 ERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASF 387
Query: 414 GHAMLEIKNRTHAHFTWHRNHDNEAVVADSQWLFNRYWYPEEE 456
GH M +IKNRTHAHF+W+RN D AV ADS W FNR+WYP ++
Sbjct: 388 GHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDD 430
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 549 bits (1414), Expect = e-156, Method: Compositional matrix adjust.
Identities = 260/399 (65%), Positives = 312/399 (78%), Gaps = 2/399 (0%)
Query: 55 EQVHITQGDHDGRSVIVSWVTP-DEKYPNVVTHWEANSKRKHKTHSIIKTYRYFNYSSGY 113
+QVHITQGD++GR VI+SW TP D+ N V +W NSK + + + TY+Y+NY+S +
Sbjct: 26 QQVHITQGDYEGRGVIISWTTPYDKAGANKVFYWSENSKSQKRAMGTVVTYKYYNYTSAF 85
Query: 114 IHHATIKRLKYDTKYFYQLGSGNATRRFHFTTPPKVGPDVPYIFGIIGDLGQTYDSNQTF 173
IHH TIK L+YDTKY+Y+LG G+A R+F F TPPK GPDVPY+FG+IGD+GQT+DSN T
Sbjct: 86 IHHCTIKDLEYDTKYYYRLGFGDAKRQFWFVTPPKPGPDVPYVFGLIGDIGQTHDSNTTL 145
Query: 174 EHYVSN-PKGQAVLFVGDLSYADDHPQHDNRRWDSWGRFVEKSTAYQAWIWVPGNHELDY 232
HY N KGQAVLF+GDLSY++ P HDN RWD+WGRF E+S AYQ WIW GNHE+DY
Sbjct: 146 THYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVAYQPWIWTAGNHEIDY 205
Query: 233 APEIGENVPFKPYTHRYHVPYRASQSTSPLWYSIKRASAYIIVLSSYSAYGKYTPQYAWL 292
AP+IGE PF P+T+RY P+ AS S PLWY+IKRASA+IIVLSSYS + KY+PQY W
Sbjct: 206 APDIGEYQPFVPFTNRYPTPHEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQYKWF 265
Query: 293 EKELPKVNRAETPWLIVLLHSPWYNSNSYHYMEGESMRVAFESWFVQHKVDLVVAGHVHS 352
EL KVNR+ETPWLIVL+H+P YNS HYMEGE+MR FE +FV +KVD+V +GHVHS
Sbjct: 266 TSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVHS 325
Query: 353 YERTNRFSNVQYNITNGISTPVKDPSAPVYLTIGDGGNIEGLADRYTEPQPSYSAYREAS 412
YER+ R SNV YNI N TPV D SAPVY+TIGDGGN EGLA T+PQPSYSA+REAS
Sbjct: 326 YERSERVSNVAYNIVNAKCTPVSDESAPVYITIGDGGNSEGLASEMTQPQPSYSAFREAS 385
Query: 413 FGHAMLEIKNRTHAHFTWHRNHDNEAVVADSQWLFNRYW 451
FGH + +IKNRTHAHF+WHRN D +V ADS WL NRYW
Sbjct: 386 FGHGIFDIKNRTHAHFSWHRNQDGASVEADSLWLLNRYW 424
>pdb|3JWN|H Chain H, Complex Of Fimc, Fimf, Fimg And Fimh
pdb|3JWN|N Chain N, Complex Of Fimc, Fimf, Fimg And Fimh
Length = 279
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 263 WYSIKRASAYIIVLSSYSAYGKYT-PQYAW-LEKELPKV---NRAETPWLIVLLHSPWYN 317
+ +++R SAY VLSS+S KY Y + E P+V +R + PW + L +P +
Sbjct: 55 YVTLQRGSAYGGVLSSFSGTVKYNGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSS 114
Query: 318 SNSYHYMEGESMRV 331
+ G + V
Sbjct: 115 AGGVAIKAGSLIAV 128
>pdb|4ACO|A Chain A, Structure Of The Budding Yeast Ndc10 N-Terminal Domain
Length = 956
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 16/65 (24%)
Query: 69 VIVSWVTPDEKYPNVVTH---------WEANSKRKHKTH-SIIKTYRYFNYSSGYIHHAT 118
+I+ W TP+ KY N H W AN + +K SI++ Y Y ++H +
Sbjct: 855 IILEWFTPNAKYANQCVHSMNKSGNKSWRANCEALYKERKSIVEFYIYL------VNHES 908
Query: 119 IKRLK 123
+ R K
Sbjct: 909 LDRYK 913
>pdb|1TR7|B Chain B, Fimh Adhesin Receptor Binding Domain From Uropathogenic E.
Coli
pdb|1TR7|A Chain A, Fimh Adhesin Receptor Binding Domain From Uropathogenic E.
Coli
Length = 164
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 263 WYSIKRASAYIIVLSSYSAYGKYT-PQYAW-LEKELPKV---NRAETPWLIVLLHSPWYN 317
+ +++R SAY VLS++S KY+ Y + E P+V +R + PW + L +P +
Sbjct: 55 YVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSS 114
Query: 318 SNSYHYMEGESMRV 331
+ G + V
Sbjct: 115 AGGVAIKAGSLIAV 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,578,706
Number of Sequences: 62578
Number of extensions: 703366
Number of successful extensions: 1404
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1392
Number of HSP's gapped (non-prelim): 11
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)