BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046210
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D8Y|A Chain A, Solution Structure Of The Lim Domain Of Epithelial
Protein Lost In Neoplasm
Length = 91
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQL 65
++ C C+KTVYP+E+L A+ V+H SCF+CS+C L L Y+S+ G +Y KPHF QL
Sbjct: 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73
Query: 66 FKESGNFNKNFQS 78
FK GN+++ F S
Sbjct: 74 FKSKGNYDEGFGS 86
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 109 HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDSYN 168
K V P E++ Q H SCF+CS+ +S YA+L G YCK HF++LFK K +Y+
Sbjct: 22 QKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYD 81
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 39/186 (20%)
Query: 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHF-- 62
G +KC VC+K VY E++ +G +HKSCF C CK L + + +Y K +
Sbjct: 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGK 64
Query: 63 ---------------------EQL---FKESGNFNKNFQSPAKLIEKLTRQDRLAKLPAC 98
E L ++E + + +++ +K+ D P C
Sbjct: 65 KYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSD---GCPRC 121
Query: 99 YLGPKNMCFLHKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFS 158
+ V +EKV ++ HKSCF+C+ G S+ + A +G YCK ++
Sbjct: 122 ----------GQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYA 171
Query: 159 KLFKEK 164
K F K
Sbjct: 172 KNFGPK 177
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 4 IGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFE 63
+G C C + VY E++ G +HKSCF+C+ C +L+ + + +G +Y K +
Sbjct: 112 VGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYA 171
Query: 64 QLF 66
+ F
Sbjct: 172 KNF 174
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 4 IGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFE 63
G +KC C +VY E++ G +HK+CF+C+ C +L+ + + EG +Y K +
Sbjct: 33 FGGAEKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYA 92
Query: 64 QLFKESG 70
+ F G
Sbjct: 93 KNFGPKG 99
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 115 SEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEK 164
+EKV + HK+CF+C+ G S+ + EG YCK ++K F K
Sbjct: 49 AEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPK 98
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15
Minimized Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 4 IGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFE 63
G +KC C +VY E++ G +HK+CF+C+ C +L+ + + EG +Y K +
Sbjct: 33 FGGAEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYA 92
Query: 64 QLFKESG 70
+ F G
Sbjct: 93 KNFGPKG 99
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 115 SEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEK 164
+EKV + HK+CF+C+ G S+ + EG YCK ++K F K
Sbjct: 49 AEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPK 98
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of
MlpCRP3
Length = 58
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 9 KCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66
KC C K+VY E++ G +HK+CF+C+ C +L+ +N + +G LY K + + F
Sbjct: 1 KCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 115 SEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLF 161
+EKV + HK+CF+C+ G S+ +N +G YCK ++K F
Sbjct: 12 AEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
>pdb|2O10|A Chain A, Solution Structure Of The N-Terminal Lim Domain Of
MlpCRP3
Length = 60
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 9 KCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFK 59
KC CEKTVY E++ +G +HK+CF C C+ L + ++ E +Y K
Sbjct: 3 KCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCK 53
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 4 IGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFE 63
+G C C + VY E++ G +HKSCF+C+ C +L+ + + +G +Y K +
Sbjct: 5 VGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYA 64
Query: 64 QLF 66
+ F
Sbjct: 65 KNF 67
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 115 SEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEK 164
+EKV ++ HKSCF+C+ G S+ + A +G YCK ++K F K
Sbjct: 21 AEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 70
>pdb|2CU8|A Chain A, Solution Structure Of The Lim Domain Of Human
Cysteine-Rich Protein 2
Length = 76
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 QKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLY-FKPHFEQLF 66
KC C+KTVY E++S+ G +HK C KC C TL ++ +G + KP + LF
Sbjct: 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLF 69
>pdb|2CO8|A Chain A, Solution Structures Of The Lim Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 82
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYF 58
G C +C + +Y +E+L +G +H+SCF+C C+ TL Y G +F
Sbjct: 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHF 66
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And
Glycine- Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 1 MSFIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKP 60
M G KC C +TVY E++ DG +H+ CF C C+ L + + + +Y K
Sbjct: 1 MPNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKS 60
Query: 61 HFEQLFKESG 70
+ + + G
Sbjct: 61 CYGKKYGPKG 70
>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
Length = 76
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 9 KCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFK-PHFEQLFK 67
KC C+K VY E++++ G +H+ C KC C TL ++ EG Y P + +F
Sbjct: 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Query: 68 ESG 70
G
Sbjct: 62 PKG 64
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 115 SEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHH-FSKLFKEK 164
+E+V + H+ C KC G +++ +A EG YC H +S +F K
Sbjct: 13 AERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPK 63
>pdb|3IXE|B Chain B, Structural Basis Of Competition Between Pinch1 And
Pinch2 For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 72
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 10 CKVCEKTVYPVEQL-SADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66
C+ C+ P E++ +++G +YH+ CF C+ C + EG Y + F+ LF
Sbjct: 14 CQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 114 PSEKVAMES-QAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLF 161
P+E++ + + +H+ CF C+ + EG YC+H F LF
Sbjct: 23 PAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLF 71
>pdb|1X63|A Chain A, Solution Structure Of The Second Lim Domain Of Skeletal
Muscle Lim Protein 1
Length = 82
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 9 KCKVCEKTVYPVEQ-LSADGIVYHKSCFKCSHCKGTLKLSNY 49
KCK C K + +Q + G V+HK CF CS+CK + ++
Sbjct: 17 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSF 58
>pdb|2KBX|B Chain B, Solution Structure Of Ilk-Pinch Complex
Length = 70
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 10 CKVCEKTVYPVEQL-SADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66
C+ C+ P E++ +++G +YH+ CF C+ C + EG Y + F+ LF
Sbjct: 10 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 67
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 114 PSEKVA-MESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLF 161
P+EK+ + +H+ CF C+ + EG YC+H F LF
Sbjct: 19 PAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 67
>pdb|3F6Q|B Chain B, Crystal Structure Of Integrin-Linked Kinase Ankyrin
Repeat Domain In Complex With Pinch1 Lim1 Domain
Length = 72
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 10 CKVCEKTVYPVEQL-SADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66
C+ C+ P E++ +++G +YH+ CF C+ C + EG Y + F+ LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 114 PSEKVA-MESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLF 161
P+EK+ + +H+ CF C+ + EG YC+H F LF
Sbjct: 23 PAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
>pdb|1G47|A Chain A, 1st Lim Domain Of Pinch Protein
Length = 77
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 10 CKVCEKTVYPVEQL-SADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66
C+ C+ P E++ +++G +YH+ CF C+ C + EG Y + F+ LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 114 PSEKVA-MESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLF 161
P+EK+ + +H+ CF C+ + EG YC+H F LF
Sbjct: 23 PAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 1 MSFIGTQQKCKVCEKTVYPVEQL--SADGIVYHKSCFKCSHCKGTL 44
+ G C C +++ P +L A G VYH CF CS C+ L
Sbjct: 61 IRLFGNSGACSACGQSI-PASELVMRAQGNVYHLKCFTCSTCRNRL 105
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 41/154 (26%)
Query: 8 QKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCK---GTLKLSNYSSMEGVLYFKPHFEQ 64
++C C + L A +H C KCS C+ G + S+Y+ G++ + + +
Sbjct: 4 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIR 62
Query: 65 LFKESGNFNKNFQSPAKLIEKLTRQDRLAKLPACYLGPKNMCFLHKIVCPSEKVAMESQA 124
LF SG + QS P+ ++ M +Q
Sbjct: 63 LFGNSGACSACGQSI----------------------------------PASELVMRAQG 88
Query: 125 --HHKSCFKCSHGGYSISPSN-YAALEGIWYCKH 155
+H CF CS + P + + + G +C+H
Sbjct: 89 NVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEH 122
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 1 MSFIGTQQKCKVCEKTVYPVEQL--SADGIVYHKSCFKCSHCKGTL 44
+ G C C +++ P +L A G VYH CF CS C+ L
Sbjct: 63 IRLFGNSGACSACGQSI-PASELVMRAQGNVYHLKCFTCSTCRNRL 107
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 41/154 (26%)
Query: 8 QKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCK---GTLKLSNYSSMEGVLYFKPHFEQ 64
++C C + L A +H C KCS C+ G + S+Y+ G++ + + +
Sbjct: 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIR 64
Query: 65 LFKESGNFNKNFQSPAKLIEKLTRQDRLAKLPACYLGPKNMCFLHKIVCPSEKVAMESQA 124
LF SG + QS P+ ++ M +Q
Sbjct: 65 LFGNSGACSACGQSI----------------------------------PASELVMRAQG 90
Query: 125 --HHKSCFKCSHGGYSISPSN-YAALEGIWYCKH 155
+H CF CS + P + + + G +C+H
Sbjct: 91 NVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEH 124
>pdb|3CTM|A Chain A, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|B Chain B, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|C Chain C, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|D Chain D, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|E Chain E, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|F Chain F, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|G Chain G, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|H Chain H, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
Length = 279
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 147 LEGIWYCKHHFSKLFKEKDSYNHLIKFASMKRVVASVPE 185
L G++YC H+ K+FK K+ LI +S+ + ++P+
Sbjct: 145 LNGVYYCSHNIGKIFK-KNGKGSLIITSSISGKIVNIPQ 182
>pdb|2DAR|A Chain A, Solution Structure Of First Lim Domain Of Enigma-Like
Pdz And Lim Domains Protein
Length = 90
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 23 LSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66
L A G +H F C+HCK T+ + +G LY + +E+ F
Sbjct: 40 LVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 9 KCKVCEKTVYPVEQLS-ADGIVYHKSCFKCSHCKGTLKLSN--YSSMEGVLYFKPHFE 63
KC C++ + P + + A VYH CF C C L + Y +G L K +E
Sbjct: 67 KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 124
>pdb|1WYH|A Chain A, Solution Structure Of The Lim Domain From Human Skeletal
Muscle Lim-Protein 2
Length = 72
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 15 KTVYP-VEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66
+TV P +L G +H+ CF CS C+ L ++ +G Y P +E F
Sbjct: 13 ETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 9 KCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHF 62
KC C + V LSA V+H CF C C + ++ ++G + + H+
Sbjct: 17 KCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHY 69
>pdb|1X4K|A Chain A, Solution Structure Of Lim Domain In Lim-Protein 3
Length = 72
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 10 CKVCEKTVYP-VEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQ 64
C+ C+KT+ P ++ G +H++CF C C+ + ++ + + P +E+
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63
>pdb|2LXD|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
Lmo2(Lim2)- Ldb1(Lid)
Length = 125
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 1 MSFIGTQQKCKVCEKTVYPVEQ-LSADGIVYHKSCFKCSHCK 41
+ G C C+K + E + VYH CFKC+ C+
Sbjct: 4 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 45
>pdb|1ZFO|A Chain A, Amino-Terminal Lim-Domain Peptide Of Lasp-1, Nmr
Length = 31
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 10 CKVCEKTVYPVEQLSADGIVYHKSCF 35
C C K VYP E+++ +HK+CF
Sbjct: 6 CARCGKIVYPTEKVNCLDKFWHKACF 31
>pdb|1HNO|A Chain A, Crystal Structure Of Peroxisomal Delta3-delta2-enoyl-coa
Isomerase From Saccharomyces Cerevisiae
pdb|1HNU|A Chain A, Crystal Structure Of Peroxisomal Delta3-Delta2-Enoyl-Coa
Isomerase From Saccharomyces Cerevisiae
pdb|1K39|A Chain A, The Structure Of Yeast Delta3-delta2-enoyl-coa Isomerase
Complexed With Octanoyl-coa
pdb|1K39|B Chain B, The Structure Of Yeast Delta3-delta2-enoyl-coa Isomerase
Complexed With Octanoyl-coa
pdb|1K39|C Chain C, The Structure Of Yeast Delta3-delta2-enoyl-coa Isomerase
Complexed With Octanoyl-coa
pdb|1PJH|A Chain A, Structural Studies On Delta3-Delta2-Enoyl-Coa Isomerase:
The Variable Mode Of Assembly Of The Trimeric Disks Of
The Crotonase Superfamily
pdb|1PJH|B Chain B, Structural Studies On Delta3-Delta2-Enoyl-Coa Isomerase:
The Variable Mode Of Assembly Of The Trimeric Disks Of
The Crotonase Superfamily
pdb|1PJH|C Chain C, Structural Studies On Delta3-Delta2-Enoyl-Coa Isomerase:
The Variable Mode Of Assembly Of The Trimeric Disks Of
The Crotonase Superfamily
Length = 280
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 44 LKLSNYSSMEGVLYFKPHFEQLFKESGNFNKNFQSP--------AKLIEKLTRQDRLAKL 95
LK ++ E +++ KP + E+G +KNF P AK++E+L + + L
Sbjct: 167 LKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYL 226
Query: 96 PACYLGPKNM 105
P+C LG K +
Sbjct: 227 PSC-LGMKKL 235
>pdb|2L6Y|B Chain B, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|C Chain C, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 96
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 1 MSFIGTQQKCKVCEKTVYPVEQ-LSADGIVYHKSCFKCSHCK 41
+ G C C+K + E + VYH CFKC+ C+
Sbjct: 2 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 43
>pdb|1X64|A Chain A, Solution Structure Of The Lim Domain Of Alpha-Actinin-2
Associated Lim Protein
Length = 89
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 5 GTQQKCKVCEKTVYPV--EQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPH 61
G+ Q+ +C+K + + A H CF C+ C LK Y +EG LY + H
Sbjct: 20 GSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETH 78
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 9 KCKVCEKTVYPVEQLS-ADGIVYHKSCFKCSHCKGTLKLSN 48
KC C+ + P + + A VYH CF C CK L +
Sbjct: 67 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGD 107
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding
Lim Protein 3
Length = 80
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 10 CKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66
C C++ + + L A +H SCFKC C + Y S +GV Y + + F
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCS-VILTGEYISKDGVPYCESDYHAQF 73
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 9 KCKVCEKTVYPVEQLS-ADGIVYHKSCFKCSHCKGTLKLSN 48
KC C+ + P + + A VYH CF C CK L +
Sbjct: 121 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGD 161
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 130 FKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKD 165
+CS G I PSNY L KH+ SK+ K +D
Sbjct: 57 IECSDNGDGIDPSNYEFLA----LKHYTSKIAKFQD 88
>pdb|2DLO|A Chain A, Solution Structure Of The Second Lim Domain Of Human
Thyroid Receptor-Interacting Protein 6
Length = 81
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 3 FIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHC 40
++ T +KC C + + L A G YH CF C C
Sbjct: 11 YVATLEKCATCSQPILD-RILRAMGKAYHPGCFTCVVC 47
>pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
Length = 131
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 1 MSFIGTQQKCKVCEKTVYPVEQ-LSADGIVYHKSCFKCSHCK 41
+ G C C+K + E + VYH CFKC+ C+
Sbjct: 60 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 101
>pdb|2CUQ|A Chain A, Solution Structure Of Second Lim Domain From Human
Skeletal Muscle Lim-Protein 2
Length = 80
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 9 KCKVCEKTVYPVEQLSADGIVY-----HKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFE 63
+C C KT L+ G+ Y H+ C C+ C+ L ++S + Y F
Sbjct: 17 RCARCSKT------LTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFG 70
Query: 64 QLF 66
+LF
Sbjct: 71 ELF 73
>pdb|1NYP|A Chain A, 4th Lim Domain Of Pinch Protein
pdb|1U5S|B Chain B, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain
And Pinch-1 Lim4 Domain
Length = 66
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 12 VCEKTVYPVEQ--LSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKE 68
+C P+E ++A G +H F C+ C+ + +G+ Y + H+ QLF +
Sbjct: 7 ICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,812,292
Number of Sequences: 62578
Number of extensions: 222318
Number of successful extensions: 455
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 81
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)