Query 046210
Match_columns 186
No_of_seqs 205 out of 1308
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 17:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 100.0 1.3E-34 4.5E-39 221.6 10.9 175 1-176 1-190 (192)
2 2xjy_A Rhombotin-2; oncoprotei 100.0 5.3E-33 1.8E-37 200.4 7.0 125 7-165 2-131 (131)
3 2xqn_T Testin, TESS; metal-bin 100.0 2.9E-32 9.8E-37 195.3 7.3 120 6-161 2-125 (126)
4 1rut_X Flinc4, fusion protein 100.0 1.4E-31 5E-36 204.1 6.0 126 6-165 4-134 (188)
5 2rgt_A Fusion of LIM/homeobox 100.0 1.6E-30 5.5E-35 195.2 7.0 124 5-165 4-131 (169)
6 2jtn_A LIM domain-binding prot 100.0 1.9E-29 6.7E-34 191.4 9.2 121 4-161 57-181 (182)
7 2cup_A Skeletal muscle LIM-pro 99.9 2E-26 7E-31 158.7 6.4 97 4-136 2-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 7.1E-25 2.4E-29 156.1 5.2 114 5-166 3-119 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.9 5.2E-23 1.8E-27 144.7 5.9 108 5-167 1-112 (114)
10 2cuq_A Four and A half LIM dom 99.8 3.3E-21 1.1E-25 127.0 5.3 78 53-167 1-79 (80)
11 1x63_A Skeletal muscle LIM-pro 99.8 3.8E-21 1.3E-25 127.3 5.2 78 54-167 2-81 (82)
12 1x3h_A Leupaxin; paxillin fami 99.8 4E-21 1.4E-25 126.6 5.2 77 53-166 1-78 (80)
13 2ehe_A Four and A half LIM dom 99.8 1.8E-21 6.3E-26 128.9 3.2 78 53-166 1-80 (82)
14 2dlo_A Thyroid receptor-intera 99.8 3E-20 1E-24 122.8 5.1 76 53-166 2-79 (81)
15 2cu8_A Cysteine-rich protein 2 99.8 7.5E-20 2.6E-24 119.4 6.1 70 1-70 3-73 (76)
16 1a7i_A QCRP2 (LIM1); LIM domai 99.8 3.8E-20 1.3E-24 122.3 4.2 70 1-70 1-70 (81)
17 2d8y_A Eplin protein; LIM doma 99.8 2.6E-19 9E-24 120.8 7.4 76 102-177 14-90 (91)
18 1x6a_A LIMK-2, LIM domain kina 99.8 1.4E-19 4.9E-24 119.4 5.1 76 54-166 2-80 (81)
19 2d8y_A Eplin protein; LIM doma 99.8 2.4E-19 8.1E-24 121.0 5.6 76 5-80 13-88 (91)
20 2egq_A FHL1 protein; LIM domai 99.8 1.3E-19 4.3E-24 118.5 3.6 72 53-160 1-77 (77)
21 2dj7_A Actin-binding LIM prote 99.8 9.2E-19 3.2E-23 115.4 5.6 67 4-71 12-78 (80)
22 2cur_A Skeletal muscle LIM-pro 99.7 2.3E-18 8E-23 110.1 4.7 65 5-70 3-67 (69)
23 1g47_A Pinch protein; LIM doma 99.7 2.5E-18 8.6E-23 112.2 4.6 70 1-70 5-75 (77)
24 2d8z_A Four and A half LIM dom 99.7 2.9E-18 1E-22 109.9 4.8 65 5-70 3-67 (70)
25 2cu8_A Cysteine-rich protein 2 99.7 5.8E-18 2E-22 110.3 5.7 67 101-167 7-75 (76)
26 1nyp_A Pinch protein; LIM doma 99.7 2.2E-18 7.6E-23 109.3 3.5 62 6-68 4-65 (66)
27 2d8x_A Protein pinch; LIM doma 99.7 6E-18 2E-22 108.5 5.3 65 4-69 2-66 (70)
28 1iml_A CRIP, cysteine rich int 99.7 6.2E-18 2.1E-22 110.2 5.4 63 8-70 1-64 (76)
29 2dar_A PDZ and LIM domain prot 99.7 5.6E-18 1.9E-22 114.0 5.2 66 5-71 23-88 (90)
30 1a7i_A QCRP2 (LIM1); LIM domai 99.7 3.1E-18 1.1E-22 113.0 3.8 70 103-172 7-78 (81)
31 1x68_A FHL5 protein; four-and- 99.7 5.1E-18 1.7E-22 110.6 4.7 66 6-71 4-72 (76)
32 1wyh_A SLIM 2, skeletal muscle 99.7 4.4E-18 1.5E-22 109.7 4.3 66 6-71 4-70 (72)
33 1x4k_A Skeletal muscle LIM-pro 99.7 6.9E-18 2.4E-22 108.7 4.8 66 6-71 4-70 (72)
34 1x4l_A Skeletal muscle LIM-pro 99.7 5.2E-18 1.8E-22 109.4 4.0 66 4-69 2-70 (72)
35 2dj7_A Actin-binding LIM prote 99.7 1.6E-17 5.4E-22 109.4 6.2 64 103-167 15-79 (80)
36 1v6g_A Actin binding LIM prote 99.7 7.8E-18 2.7E-22 111.0 4.3 76 54-166 2-79 (81)
37 2co8_A NEDD9 interacting prote 99.7 8.3E-18 2.8E-22 111.3 3.5 66 3-68 11-78 (82)
38 1x62_A C-terminal LIM domain p 99.7 7.2E-18 2.5E-22 110.8 3.0 65 5-70 13-77 (79)
39 1nyp_A Pinch protein; LIM doma 99.7 1.6E-17 5.5E-22 105.3 4.3 61 103-164 5-66 (66)
40 1x63_A Skeletal muscle LIM-pro 99.7 2.1E-17 7.4E-22 109.1 4.9 67 5-71 13-80 (82)
41 2cur_A Skeletal muscle LIM-pro 99.7 3.5E-17 1.2E-21 104.6 5.6 63 103-166 5-68 (69)
42 2d8z_A Four and A half LIM dom 99.7 4.7E-17 1.6E-21 104.2 5.9 63 103-166 5-68 (70)
43 1x64_A Alpha-actinin-2 associa 99.7 2.5E-17 8.4E-22 110.6 4.5 65 5-70 23-87 (89)
44 1wyh_A SLIM 2, skeletal muscle 99.7 4.9E-17 1.7E-21 104.7 5.7 64 103-166 5-70 (72)
45 1x3h_A Leupaxin; paxillin fami 99.7 4.2E-17 1.4E-21 107.2 5.0 64 6-70 14-77 (80)
46 2dlo_A Thyroid receptor-intera 99.7 4.4E-17 1.5E-21 107.4 5.1 67 3-70 11-78 (81)
47 2dar_A PDZ and LIM domain prot 99.7 6.7E-17 2.3E-21 108.7 6.0 64 103-167 25-89 (90)
48 1iml_A CRIP, cysteine rich int 99.7 4.9E-17 1.7E-21 105.9 5.2 66 105-170 2-69 (76)
49 1x4l_A Skeletal muscle LIM-pro 99.7 6.1E-17 2.1E-21 104.3 5.5 63 103-165 5-71 (72)
50 2cor_A Pinch protein; LIM doma 99.7 3.3E-17 1.1E-21 107.6 3.8 65 4-70 12-76 (79)
51 2cuq_A Four and A half LIM dom 99.7 5.1E-17 1.7E-21 106.8 4.6 66 5-71 13-78 (80)
52 1x4k_A Skeletal muscle LIM-pro 99.7 6.5E-17 2.2E-21 104.1 4.9 64 103-166 5-70 (72)
53 2ehe_A Four and A half LIM dom 99.7 4.1E-17 1.4E-21 107.8 4.0 66 5-70 13-79 (82)
54 1x61_A Thyroid receptor intera 99.7 5E-17 1.7E-21 104.7 4.3 64 5-68 3-67 (72)
55 1x68_A FHL5 protein; four-and- 99.7 3.8E-17 1.3E-21 106.5 3.7 67 103-169 5-75 (76)
56 1wig_A KIAA1808 protein; LIM d 99.7 6.9E-17 2.4E-21 104.5 4.2 62 6-68 4-66 (73)
57 1x62_A C-terminal LIM domain p 99.6 6.3E-17 2.2E-21 106.2 4.0 63 103-166 15-78 (79)
58 3f6q_B LIM and senescent cell 99.6 7.3E-17 2.5E-21 103.7 4.0 63 5-67 9-72 (72)
59 1x64_A Alpha-actinin-2 associa 99.6 2.6E-16 8.7E-21 105.6 6.7 64 102-166 24-88 (89)
60 1j2o_A FLIN2, fusion of rhombo 99.6 1.7E-16 5.7E-21 111.3 5.9 67 103-169 3-72 (114)
61 2d8x_A Protein pinch; LIM doma 99.6 2.4E-16 8.1E-21 101.0 6.1 63 103-166 5-68 (70)
62 1g47_A Pinch protein; LIM doma 99.6 1.3E-16 4.5E-21 104.0 4.8 64 103-166 11-76 (77)
63 2l4z_A DNA endonuclease RBBP8, 99.6 1.3E-16 4.6E-21 113.3 4.5 61 7-67 61-123 (123)
64 2co8_A NEDD9 interacting prote 99.6 2.2E-16 7.4E-21 104.4 4.6 64 102-165 14-80 (82)
65 2iyb_E Testin, TESS, TES; LIM 99.6 2.4E-16 8.3E-21 99.6 3.7 59 7-65 2-64 (65)
66 2cor_A Pinch protein; LIM doma 99.6 8.4E-16 2.9E-20 100.8 6.3 62 103-166 15-77 (79)
67 2egq_A FHL1 protein; LIM domai 99.6 4.7E-16 1.6E-20 101.4 4.5 61 5-65 13-77 (77)
68 1x61_A Thyroid receptor intera 99.6 8.5E-16 2.9E-20 98.9 5.3 61 103-163 5-67 (72)
69 2cup_A Skeletal muscle LIM-pro 99.6 9E-16 3.1E-20 105.1 5.3 68 103-170 5-74 (101)
70 2l3k_A Rhombotin-2, linker, LI 99.6 6.1E-16 2.1E-20 109.8 4.1 70 104-173 9-81 (123)
71 1x6a_A LIMK-2, LIM domain kina 99.6 7.3E-16 2.5E-20 101.4 4.1 63 6-69 14-78 (81)
72 2xqn_T Testin, TESS; metal-bin 99.6 1E-15 3.6E-20 108.9 5.2 68 103-170 3-71 (126)
73 1wig_A KIAA1808 protein; LIM d 99.6 1.3E-15 4.3E-20 98.5 4.9 62 103-165 5-68 (73)
74 1b8t_A Protein (CRP1); LIM dom 99.6 1.2E-15 4.1E-20 116.2 5.0 64 5-68 113-176 (192)
75 3f6q_B LIM and senescent cell 99.6 1.6E-15 5.4E-20 97.4 4.5 60 103-162 11-72 (72)
76 1m3v_A FLIN4, fusion of the LI 99.6 1.2E-15 4E-20 108.2 4.3 67 103-169 5-76 (122)
77 2jtn_A LIM domain-binding prot 99.6 1.8E-15 6.2E-20 114.3 5.4 67 103-170 60-127 (182)
78 2l4z_A DNA endonuclease RBBP8, 99.6 1.8E-15 6.2E-20 107.4 4.6 60 103-162 61-123 (123)
79 2l3k_A Rhombotin-2, linker, LI 99.5 3E-15 1E-19 106.2 4.1 69 6-74 7-77 (123)
80 2iyb_E Testin, TESS, TES; LIM 99.5 5.6E-15 1.9E-19 93.2 3.8 57 104-160 3-64 (65)
81 2xjy_A Rhombotin-2; oncoprotei 99.5 1.8E-14 6.3E-19 103.0 5.1 67 104-170 3-74 (131)
82 1v6g_A Actin binding LIM prote 99.5 1.1E-14 3.8E-19 95.8 2.6 62 6-68 14-76 (81)
83 2rgt_A Fusion of LIM/homeobox 99.5 3.3E-14 1.1E-18 106.1 5.5 67 103-170 6-73 (169)
84 1rut_X Flinc4, fusion protein 99.4 6.8E-14 2.3E-18 106.1 3.6 68 103-170 5-77 (188)
85 1zfo_A LAsp-1; LIM domain, zin 98.6 1.2E-08 4.2E-13 54.4 1.2 29 7-35 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.0 1.9E-06 6.5E-11 45.7 2.0 27 104-130 4-31 (31)
87 1jjd_A Metallothionein, SMTA; 90.0 0.21 7.1E-06 29.5 2.5 29 131-159 9-38 (55)
88 2ysm_A Myeloid/lymphoid or mix 89.2 0.98 3.3E-05 30.3 5.8 50 4-62 4-55 (111)
89 2ct0_A Non-SMC element 1 homol 84.4 0.4 1.4E-05 30.1 1.5 33 3-35 11-43 (74)
90 2eqg_A Tumor necrosis factor, 83.4 0.52 1.8E-05 26.2 1.5 18 144-161 22-39 (49)
91 2gvi_A Conserved hypothetical 78.3 0.78 2.7E-05 34.5 1.4 30 130-159 173-202 (204)
92 4gne_A Histone-lysine N-methyl 74.3 5.9 0.0002 26.5 4.8 42 6-61 14-59 (107)
93 4ap4_A E3 ubiquitin ligase RNF 71.0 2.7 9.3E-05 28.3 2.7 91 35-162 8-111 (133)
94 1x4j_A Ring finger protein 38; 70.0 2.7 9.2E-05 25.6 2.2 40 6-45 22-71 (75)
95 2xeu_A Ring finger protein 4; 69.8 1.6 5.6E-05 25.4 1.1 42 6-47 2-57 (64)
96 2e5r_A Dystrobrevin alpha; ZZ 69.6 4.1 0.00014 24.5 2.9 39 120-160 4-45 (63)
97 4hc9_A Trans-acting T-cell-spe 67.1 11 0.00037 25.5 4.9 30 130-159 60-89 (115)
98 2gvi_A Conserved hypothetical 65.9 1.4 4.8E-05 33.1 0.3 31 34-64 172-202 (204)
99 2dmj_A Poly (ADP-ribose) polym 64.3 3.7 0.00013 27.4 2.1 18 5-22 23-40 (106)
100 2ecm_A Ring finger and CHY zin 63.7 5.2 0.00018 22.4 2.5 39 6-44 4-53 (55)
101 2djb_A Polycomb group ring fin 63.1 6 0.0002 23.7 2.8 35 33-67 14-48 (72)
102 2ect_A Ring finger protein 126 62.8 9.1 0.00031 23.2 3.7 41 6-46 14-64 (78)
103 1v9x_A Poly (ADP-ribose) polym 61.5 3.6 0.00012 27.9 1.7 18 5-22 18-35 (114)
104 2ecl_A Ring-box protein 2; RNF 60.3 3.8 0.00013 25.5 1.5 42 5-46 13-76 (81)
105 1uw0_A DNA ligase III; DNA rep 58.1 4 0.00014 27.7 1.4 18 5-22 13-30 (117)
106 1iym_A EL5; ring-H2 finger, ub 57.7 6.4 0.00022 22.0 2.1 30 6-35 4-36 (55)
107 3ng2_A RNF4, snurf, ring finge 57.6 3.7 0.00013 24.4 1.1 43 6-48 9-65 (71)
108 3odc_A Poly [ADP-ribose] polym 56.1 3.2 0.00011 28.0 0.6 18 5-22 17-34 (111)
109 2ea6_A Ring finger protein 4; 56.1 4.4 0.00015 23.8 1.3 39 7-45 15-67 (69)
110 3od8_A Poly [ADP-ribose] polym 54.7 5.1 0.00018 27.2 1.5 18 5-22 36-53 (116)
111 4ap4_A E3 ubiquitin ligase RNF 53.8 13 0.00045 24.7 3.6 58 7-67 48-111 (133)
112 1chc_A Equine herpes virus-1 r 53.8 17 0.00058 21.2 3.7 31 36-66 7-37 (68)
113 2ep4_A Ring finger protein 24; 51.9 10 0.00034 22.7 2.5 29 7-35 15-45 (74)
114 2kiz_A E3 ubiquitin-protein li 51.5 9.1 0.00031 22.6 2.2 40 6-45 13-62 (69)
115 1t1h_A Gspef-atpub14, armadill 50.6 14 0.00049 22.2 3.1 35 32-67 6-40 (78)
116 2cs2_A Poly [ADP-ribose] polym 50.2 5.8 0.0002 27.7 1.2 18 5-22 25-42 (134)
117 2cs3_A Protein C14ORF4, MY039 49.8 8.5 0.00029 24.4 1.8 30 9-38 17-46 (93)
118 2puy_A PHD finger protein 21A; 49.7 15 0.00052 21.4 2.9 49 6-66 4-54 (60)
119 2d8s_A Cellular modulator of i 48.3 18 0.0006 22.5 3.2 41 5-45 13-69 (80)
120 2ecy_A TNF receptor-associated 47.5 12 0.0004 21.9 2.2 32 34-66 15-46 (66)
121 2e6s_A E3 ubiquitin-protein li 47.1 16 0.00056 22.6 2.9 44 9-61 28-74 (77)
122 2kre_A Ubiquitin conjugation f 46.6 19 0.00066 23.3 3.3 34 32-66 27-60 (100)
123 2d8v_A Zinc finger FYVE domain 46.5 9.8 0.00033 23.1 1.7 30 36-66 10-39 (67)
124 2d8t_A Dactylidin, ring finger 46.4 13 0.00046 22.0 2.4 28 7-35 15-42 (71)
125 2lri_C Autoimmune regulator; Z 46.4 9 0.00031 23.1 1.5 47 6-64 11-59 (66)
126 1mm2_A MI2-beta; PHD, zinc fin 46.3 17 0.00058 21.3 2.8 48 6-65 8-57 (61)
127 2csy_A Zinc finger protein 183 45.8 12 0.00042 22.8 2.2 32 35-67 16-47 (81)
128 1wen_A Inhibitor of growth fam 45.6 17 0.00059 22.1 2.8 46 6-64 15-65 (71)
129 1f62_A Transcription factor WS 45.4 11 0.00039 21.0 1.8 45 9-62 2-48 (51)
130 2vut_I AREA, nitrogen regulato 45.1 15 0.0005 20.2 2.1 29 131-159 3-31 (43)
131 2y43_A E3 ubiquitin-protein li 45.1 13 0.00044 23.7 2.3 34 34-67 22-55 (99)
132 1fp0_A KAP-1 corepressor; PHD 44.9 26 0.00088 22.5 3.6 47 5-63 23-71 (88)
133 2bay_A PRE-mRNA splicing facto 44.4 13 0.00046 21.7 2.1 34 34-68 3-37 (61)
134 2l5u_A Chromodomain-helicase-D 44.4 21 0.0007 21.0 2.9 48 5-64 9-58 (61)
135 2kr4_A Ubiquitin conjugation f 44.1 18 0.00063 22.5 2.9 35 32-67 12-46 (85)
136 2k16_A Transcription initiatio 43.7 11 0.00039 22.9 1.8 50 8-66 19-70 (75)
137 2ecn_A Ring finger protein 141 42.8 12 0.00039 22.1 1.7 38 6-45 14-59 (70)
138 2yur_A Retinoblastoma-binding 41.7 23 0.00079 21.2 3.0 34 33-67 14-48 (74)
139 2jne_A Hypothetical protein YF 41.4 9.6 0.00033 25.0 1.1 39 8-65 33-71 (101)
140 3c6w_A P28ING5, inhibitor of g 41.0 13 0.00044 21.8 1.6 45 6-63 8-57 (59)
141 2vnf_A ING 4, P29ING4, inhibit 40.9 14 0.00049 21.6 1.8 44 7-63 10-58 (60)
142 1xwh_A Autoimmune regulator; P 40.9 18 0.00062 21.5 2.3 49 6-66 7-57 (66)
143 1wfh_A Zinc finger (AN1-like) 40.6 16 0.00054 22.0 1.9 25 37-61 18-42 (64)
144 1wgm_A Ubiquitin conjugation f 40.6 25 0.00087 22.6 3.2 34 32-66 20-54 (98)
145 1wg2_A Zinc finger (AN1-like) 40.1 17 0.00057 21.9 2.0 10 8-17 16-25 (64)
146 3asl_A E3 ubiquitin-protein li 39.8 29 0.001 20.9 3.2 45 9-62 20-67 (70)
147 3lrq_A E3 ubiquitin-protein li 39.5 21 0.00071 22.9 2.6 34 34-67 22-55 (100)
148 3o36_A Transcription intermedi 39.4 22 0.00077 25.6 3.1 48 6-65 3-52 (184)
149 2l0b_A E3 ubiquitin-protein li 39.3 14 0.00049 23.3 1.8 30 6-35 39-70 (91)
150 2kwj_A Zinc finger protein DPF 39.1 17 0.00059 24.2 2.2 12 32-43 56-67 (114)
151 3vk6_A E3 ubiquitin-protein li 38.8 17 0.00058 24.0 2.0 29 37-65 4-32 (101)
152 3d00_A Tungsten formylmethanof 37.8 7.9 0.00027 28.6 0.4 26 128-159 162-187 (191)
153 2yu4_A E3 SUMO-protein ligase 37.6 19 0.00065 22.9 2.2 34 129-163 7-41 (94)
154 2ckl_A Polycomb group ring fin 37.5 19 0.00064 23.4 2.2 33 34-67 15-48 (108)
155 2ku3_A Bromodomain-containing 37.1 17 0.00059 22.1 1.8 51 5-66 14-68 (71)
156 4ayc_A E3 ubiquitin-protein li 36.5 21 0.0007 24.4 2.4 31 35-66 54-84 (138)
157 2jrp_A Putative cytoplasmic pr 35.5 18 0.00061 22.9 1.7 39 8-65 3-41 (81)
158 2g6q_A Inhibitor of growth pro 35.2 18 0.00063 21.4 1.7 44 7-63 11-59 (62)
159 1wfp_A Zinc finger (AN1-like) 35.1 22 0.00076 22.0 2.0 26 36-61 27-52 (74)
160 2e6r_A Jumonji/ARID domain-con 34.8 37 0.0013 21.7 3.2 51 7-66 16-68 (92)
161 1gnf_A Transcription factor GA 34.6 22 0.00075 19.8 1.8 28 131-158 6-33 (46)
162 4gat_A Nitrogen regulatory pro 34.3 26 0.00089 21.1 2.2 29 131-159 11-39 (66)
163 3dfx_A Trans-acting T-cell-spe 34.0 25 0.00085 21.1 2.1 29 131-159 9-37 (63)
164 2vpb_A Hpygo1, pygopus homolog 34.0 17 0.00058 21.8 1.4 30 5-34 6-39 (65)
165 2ysj_A Tripartite motif-contai 33.6 28 0.00096 19.8 2.3 32 130-162 21-52 (63)
166 1wfl_A Zinc finger protein 216 33.6 22 0.00074 22.1 1.8 25 37-61 28-52 (74)
167 2dip_A Zinc finger SWIM domain 33.5 29 0.00099 22.6 2.5 37 124-161 27-66 (98)
168 1wev_A Riken cDNA 1110020M19; 33.1 14 0.00048 23.5 0.9 53 8-65 17-73 (88)
169 1weu_A Inhibitor of growth fam 32.5 24 0.00083 22.7 2.0 45 7-64 36-85 (91)
170 2yt5_A Metal-response element- 32.0 30 0.001 20.3 2.3 56 4-65 3-62 (66)
171 3hcs_A TNF receptor-associated 31.4 23 0.0008 25.0 2.0 34 33-67 17-50 (170)
172 1jm7_B BARD1, BRCA1-associated 31.4 42 0.0014 22.0 3.2 33 34-67 22-55 (117)
173 4av1_A Poly [ADP-ribose] polym 31.4 10 0.00034 28.8 0.0 18 5-22 141-158 (223)
174 2c2l_A CHIP, carboxy terminus 31.3 41 0.0014 25.3 3.6 36 31-67 205-240 (281)
175 3hct_A TNF receptor-associated 31.2 25 0.00085 23.2 2.0 33 34-67 18-50 (118)
176 1wff_A Riken cDNA 2810002D23 p 31.0 69 0.0024 20.3 3.9 25 132-156 28-53 (85)
177 2das_A Zinc finger MYM-type pr 29.1 32 0.0011 20.4 1.9 25 35-59 21-48 (62)
178 2lo3_A SAGA-associated factor 29.1 18 0.0006 19.9 0.7 12 8-19 18-29 (44)
179 2yql_A PHD finger protein 21A; 29.0 34 0.0012 19.5 2.1 46 5-62 7-54 (56)
180 3u5n_A E3 ubiquitin-protein li 28.9 50 0.0017 24.3 3.5 48 5-64 5-54 (207)
181 3shb_A E3 ubiquitin-protein li 28.8 54 0.0018 20.2 3.1 26 10-35 29-56 (77)
182 2jny_A Uncharacterized BCR; st 27.9 29 0.001 21.0 1.7 24 35-61 11-34 (67)
183 1jm7_A BRCA1, breast cancer ty 27.7 52 0.0018 21.1 3.1 33 34-67 21-53 (112)
184 1znf_A 31ST zinc finger from X 27.7 24 0.00081 15.4 1.1 12 130-141 2-13 (27)
185 2ds5_A CLPX, ATP-dependent CLP 27.5 45 0.0015 19.0 2.3 30 130-159 12-42 (51)
186 2lbz_A Thuricin17, thurincin H 27.5 22 0.00076 17.4 0.9 13 127-139 5-17 (31)
187 3nw0_A Non-structural maintena 27.4 16 0.00056 27.8 0.6 15 4-18 177-191 (238)
188 2ckl_B Ubiquitin ligase protei 27.4 41 0.0014 23.5 2.7 35 33-67 53-87 (165)
189 1v87_A Deltex protein 2; ring- 27.4 22 0.00075 23.1 1.2 13 7-19 25-37 (114)
190 2ecv_A Tripartite motif-contai 27.1 37 0.0013 20.4 2.2 33 34-67 19-51 (85)
191 1ovx_A ATP-dependent CLP prote 26.7 43 0.0015 20.3 2.3 30 130-159 19-49 (67)
192 2hf1_A Tetraacyldisaccharide-1 26.6 32 0.0011 20.8 1.7 24 35-61 9-32 (68)
193 2ysl_A Tripartite motif-contai 26.5 34 0.0011 20.1 1.8 32 130-162 21-52 (73)
194 3fl2_A E3 ubiquitin-protein li 26.4 24 0.00083 23.4 1.3 31 35-66 53-83 (124)
195 2ecw_A Tripartite motif-contai 26.4 46 0.0016 19.9 2.5 33 130-163 20-52 (85)
196 1ard_A Yeast transcription fac 26.2 26 0.00088 15.5 1.0 12 130-141 3-14 (29)
197 2jr6_A UPF0434 protein NMA0874 26.0 34 0.0011 20.7 1.7 24 35-61 9-32 (68)
198 2kvh_A Zinc finger and BTB dom 25.7 24 0.0008 15.6 0.8 12 130-141 4-15 (27)
199 2js4_A UPF0434 protein BB2007; 25.4 31 0.0011 21.0 1.5 24 35-61 9-32 (70)
200 2pk7_A Uncharacterized protein 25.2 35 0.0012 20.7 1.7 24 35-61 9-32 (69)
201 2ro1_A Transcription intermedi 25.1 34 0.0012 24.9 1.9 46 7-64 2-49 (189)
202 2ecj_A Tripartite motif-contai 25.1 59 0.002 17.8 2.7 32 130-162 16-47 (58)
203 2ctu_A Zinc finger protein 483 24.8 82 0.0028 17.6 3.4 35 130-165 19-53 (73)
204 3v43_A Histone acetyltransfera 24.5 42 0.0014 22.1 2.2 35 8-43 27-70 (112)
205 3dpl_R Ring-box protein 1; ubi 24.4 34 0.0011 22.5 1.6 39 6-44 36-99 (106)
206 1paa_A Yeast transcription fac 24.2 31 0.0011 15.4 1.1 13 130-142 3-15 (30)
207 2xb1_A Pygopus homolog 2, B-ce 23.8 51 0.0017 21.6 2.5 53 6-65 2-62 (105)
208 1twf_L ABC10-alpha, DNA-direct 23.3 17 0.00058 22.3 -0.0 25 130-158 29-53 (70)
209 1rik_A E6APC1 peptide; E6-bind 23.2 30 0.001 15.3 0.9 13 130-142 3-15 (29)
210 1pft_A TFIIB, PFTFIIBN; N-term 22.9 39 0.0013 18.7 1.5 9 53-61 22-30 (50)
211 2m0e_A Zinc finger and BTB dom 22.8 35 0.0012 14.9 1.1 13 130-142 3-15 (29)
212 1wim_A KIAA0161 protein; ring 22.5 53 0.0018 20.5 2.3 33 130-162 6-40 (94)
213 1wil_A KIAA1045 protein; ring 22.5 16 0.00056 23.3 -0.2 29 7-36 15-45 (89)
214 1vq8_U 50S ribosomal protein L 22.4 34 0.0012 20.7 1.2 24 8-31 4-30 (66)
215 3j21_V 50S ribosomal protein L 22.4 37 0.0013 20.5 1.4 25 7-31 4-31 (66)
216 2m0f_A Zinc finger and BTB dom 22.3 29 0.00099 15.2 0.8 12 130-141 3-14 (29)
217 2kvf_A Zinc finger and BTB dom 22.1 30 0.001 15.2 0.8 12 130-141 4-15 (28)
218 1klr_A Zinc finger Y-chromosom 22.1 36 0.0012 15.0 1.1 13 130-142 3-15 (30)
219 2lvu_A Zinc finger and BTB dom 27.4 19 0.00066 15.7 0.0 13 130-142 3-15 (26)
220 1z6u_A NP95-like ring finger p 21.5 66 0.0023 22.3 2.8 32 34-66 78-109 (150)
221 1rmd_A RAG1; V(D)J recombinati 21.4 66 0.0023 20.9 2.7 33 34-67 23-55 (116)
222 1k0p_A DNA polymerase alpha ca 21.3 56 0.0019 16.5 1.7 15 1-15 16-30 (31)
223 2m0d_A Zinc finger and BTB dom 20.8 32 0.0011 15.2 0.8 12 130-141 4-15 (30)
224 2lv9_A Histone-lysine N-methyl 20.4 1.4E+02 0.0048 19.0 4.1 45 8-63 29-75 (98)
225 2f42_A STIP1 homology and U-bo 20.2 73 0.0025 23.1 2.9 35 32-67 104-138 (179)
226 1e4u_A Transcriptional repress 20.2 1.6E+02 0.0053 17.8 5.1 14 148-161 33-46 (78)
227 3knv_A TNF receptor-associated 20.2 64 0.0022 22.1 2.5 32 130-162 32-63 (141)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=100.00 E-value=1.3e-34 Score=221.63 Aligned_cols=175 Identities=27% Similarity=0.473 Sum_probs=135.5
Q ss_pred CCCCCCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCCCC-ccCCCC
Q 046210 1 MSFIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGNFN-KNFQSP 79 (186)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~~~-~~~~~~ 79 (186)
|...++.++|.+|+++|+.++.|.++|+.||++||+|..|+++|....|+.++|++||..||.++|+++|... .+.+..
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~ 80 (192)
T 1b8t_A 1 MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTL 80 (192)
T ss_dssp CCCCCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCC
T ss_pred CCCCCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccE
Confidence 6678889999999999988899999999999999999999999999999999999999999999999987421 100000
Q ss_pred --ch---h--hhhhhccccc-----CCCCcccCCCCCCCCC-CceeecccceecccccccccceeccccccccCCCCcee
Q 046210 80 --AK---L--IEKLTRQDRL-----AKLPACYLGPKNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAA 146 (186)
Q Consensus 80 --~~---~--~~~~~~~~~~-----~~~~~~~~~~~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~ 146 (186)
.+ + .+.......| +.....+ +..++|.+ +++|.+++.|.++++.||++||+|..|+++|.++.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 159 (192)
T 1b8t_A 81 STDKGESLGIKYEEGQSHRPTNPNASRMAQKV-GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLAD 159 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEE
T ss_pred ecCCCcccccccccccccCCCCcCcccccccc-CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccc
Confidence 00 0 0000000001 1111111 23567999 99998888899999999999999999999998888999
Q ss_pred cCCccccHHHHhhhhcCCCC-CCcccccccc
Q 046210 147 LEGIWYCKHHFSKLFKEKDS-YNHLIKFASM 176 (186)
Q Consensus 147 ~~g~~yC~~cy~k~~~~k~~-~~~~~~~~~~ 176 (186)
+||++||+.||.++|+++|. ..+..|...+
T Consensus 160 ~~g~~yC~~cy~~~f~~kc~~C~~~~g~~~~ 190 (192)
T 1b8t_A 160 KDGEIYCKGCYAKNFGPKGFGFGQGAGALIH 190 (192)
T ss_dssp ETTEEEEHHHHHHHTCCCCCCCCCCCCCCCC
T ss_pred cCCEEeCHHHHHHhcCCcCCCCCCcccceee
Confidence 99999999999999999994 4444465544
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.98 E-value=5.3e-33 Score=200.38 Aligned_cols=125 Identities=18% Similarity=0.352 Sum_probs=111.8
Q ss_pred CCCcccCCceeccCceEEeCCccccccccccccccccccC--CCccccCCeeecCcchhhhhcccCCCCccCCCCchhhh
Q 046210 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYFKPHFEQLFKESGNFNKNFQSPAKLIE 84 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~ 84 (186)
.++|.+|+++|...+.|.++|+.||++||+|+.|+++|.. ..|+.++|++||..||.++|++
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~---------------- 65 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ---------------- 65 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC----------------
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC----------------
Confidence 5789999999976668999999999999999999999974 5799999999999999999954
Q ss_pred hhhcccccCCCCcccCCCCCCCCC-Cceeeccc-ceecccccccccceecccccccc-CCCCceecCCccccHHHHhhhh
Q 046210 85 KLTRQDRLAKLPACYLGPKNMCFL-HKIVCPSE-KVAMESQAHHKSCFKCSHGGYSI-SPSNYAALEGIWYCKHHFSKLF 161 (186)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~~-~v~~~g~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~k~~ 161 (186)
..+|.. +++|...+ .|.+.++.||++||+|..|+++| .+..|+..||++||..||.++|
T Consensus 66 ------------------~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~ 127 (131)
T 2xjy_A 66 ------------------DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWT 127 (131)
T ss_dssp ------------------CEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHH
T ss_pred ------------------ccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHh
Confidence 237999 99997655 56789999999999999999999 4667999999999999999999
Q ss_pred cCCC
Q 046210 162 KEKD 165 (186)
Q Consensus 162 ~~k~ 165 (186)
+++|
T Consensus 128 ~~~~ 131 (131)
T 2xjy_A 128 KING 131 (131)
T ss_dssp HHHC
T ss_pred hccC
Confidence 8764
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.97 E-value=2.9e-32 Score=195.32 Aligned_cols=120 Identities=21% Similarity=0.464 Sum_probs=111.1
Q ss_pred CCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCCCCccCCCCchhhhh
Q 046210 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGNFNKNFQSPAKLIEK 85 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~ 85 (186)
..++|.+|+++|..++.+.++|+.||++||+|+.|+++|.+..|+.++|++||..||.++|++
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~----------------- 64 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAV----------------- 64 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCC-----------------
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCc-----------------
Confidence 358999999999878899999999999999999999999998999999999999999999965
Q ss_pred hhcccccCCCCcccCCCCCCCCC-Cceeecc-cceeccccccc--ccceeccccccccCCCCceecCCccccHHHHhhhh
Q 046210 86 LTRQDRLAKLPACYLGPKNMCFL-HKIVCPS-EKVAMESQAHH--KSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLF 161 (186)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~-~~v~~~g~~~H--~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~ 161 (186)
+|.+ +++|.+. ..|.+.++.|| ++||+|..|+++|.+..|+..||++||+.+|.++|
T Consensus 65 -------------------~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 65 -------------------VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp -------------------BCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred -------------------cCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 8999 9999764 46889999999 99999999999999888999999999998888876
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.97 E-value=1.4e-31 Score=204.12 Aligned_cols=126 Identities=20% Similarity=0.435 Sum_probs=110.8
Q ss_pred CCCCcccCCceeccCceEEeCCccccccccccccccccccC--CCccccCCeeecCcchhhhhcccCCCCccCCCCchhh
Q 046210 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYFKPHFEQLFKESGNFNKNFQSPAKLI 83 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~ 83 (186)
..++|.+|+++|...++|.++|+.||++||+|+.|+++|.. ..|+.++|++||..||.++|++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~--------------- 68 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN--------------- 68 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC---------------
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCcccccccccccccc---------------
Confidence 46899999999986667999999999999999999999986 6899999999999999999965
Q ss_pred hhhhcccccCCCCcccCCCCCCCCC-Cceeeccc-ceecccccccccceeccccccccC-CCCceecCCccccHHHHhhh
Q 046210 84 EKLTRQDRLAKLPACYLGPKNMCFL-HKIVCPSE-KVAMESQAHHKSCFKCSHGGYSIS-PSNYAALEGIWYCKHHFSKL 160 (186)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~~-~v~~~g~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~k~ 160 (186)
..+|.. +++|...+ .+.+.++.||++||+|..|+++|. +..|+..+|++||+.||.++
T Consensus 69 -------------------~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~ 129 (188)
T 1rut_X 69 -------------------SGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTA 129 (188)
T ss_dssp -------------------CEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTT
T ss_pred -------------------CCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHH
Confidence 226999 99997655 467999999999999999999995 56799999999999999999
Q ss_pred hcCCC
Q 046210 161 FKEKD 165 (186)
Q Consensus 161 ~~~k~ 165 (186)
|++++
T Consensus 130 ~~~~~ 134 (188)
T 1rut_X 130 LINGH 134 (188)
T ss_dssp TC---
T ss_pred hcccc
Confidence 99998
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.96 E-value=1.6e-30 Score=195.17 Aligned_cols=124 Identities=19% Similarity=0.350 Sum_probs=107.1
Q ss_pred CCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCCCCccCCCCchhhh
Q 046210 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGNFNKNFQSPAKLIE 84 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~ 84 (186)
.+.++|.+|+++|...++|.++|+.||++||+|..|+++|.+..| .++|++||..||.++|++
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~---------------- 66 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGT---------------- 66 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSC----------------
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccc----------------
Confidence 456899999999987778999999999999999999999998764 789999999999999965
Q ss_pred hhhcccccCCCCcccCCCCCCCCC-Cceeecccc-eecccccccccceeccccccccC-CCCce-ecCCccccHHHHhhh
Q 046210 85 KLTRQDRLAKLPACYLGPKNMCFL-HKIVCPSEK-VAMESQAHHKSCFKCSHGGYSIS-PSNYA-ALEGIWYCKHHFSKL 160 (186)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~~~-v~~~g~~~H~~CF~C~~C~~~L~-~~~~~-~~~g~~yC~~cy~k~ 160 (186)
+|.. +++|...+. +.+.++.||++||+|..|+++|. +..|+ ..||++||+.||.++
T Consensus 67 --------------------~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~ 126 (169)
T 2rgt_A 67 --------------------KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 126 (169)
T ss_dssp --------------------BCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHH
T ss_pred --------------------cccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHH
Confidence 8999 999977664 46899999999999999999996 45565 469999999999999
Q ss_pred hcCCC
Q 046210 161 FKEKD 165 (186)
Q Consensus 161 ~~~k~ 165 (186)
++...
T Consensus 127 ~~~~~ 131 (169)
T 2rgt_A 127 KQGGS 131 (169)
T ss_dssp HHCC-
T ss_pred hhccC
Confidence 87643
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.96 E-value=1.9e-29 Score=191.38 Aligned_cols=121 Identities=20% Similarity=0.357 Sum_probs=106.1
Q ss_pred CCCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCCCCccCCCCchhh
Q 046210 4 IGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGNFNKNFQSPAKLI 83 (186)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~ 83 (186)
....++|.+|+++|...+++.++|+.||++||+|..|+++|....| .++|++||..||.++|++
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~--------------- 120 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGT--------------- 120 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSC---------------
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCcccccccc---------------
Confidence 4556899999999987778899999999999999999999998765 789999999999999965
Q ss_pred hhhhcccccCCCCcccCCCCCCCCC-Cceeecccc-eecccccccccceeccccccccC-CCCce-ecCCccccHHHHhh
Q 046210 84 EKLTRQDRLAKLPACYLGPKNMCFL-HKIVCPSEK-VAMESQAHHKSCFKCSHGGYSIS-PSNYA-ALEGIWYCKHHFSK 159 (186)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~~~-v~~~g~~~H~~CF~C~~C~~~L~-~~~~~-~~~g~~yC~~cy~k 159 (186)
+|.. +++|.+.+. +.+.++.||++||+|..|+++|. +..|+ ..||++||+.||.+
T Consensus 121 ---------------------kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~ 179 (182)
T 2jtn_A 121 ---------------------KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 179 (182)
T ss_dssp ---------------------CCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHH
T ss_pred ---------------------ccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHH
Confidence 8999 999976654 46899999999999999999996 45565 46999999999987
Q ss_pred hh
Q 046210 160 LF 161 (186)
Q Consensus 160 ~~ 161 (186)
+.
T Consensus 180 ~~ 181 (182)
T 2jtn_A 180 AK 181 (182)
T ss_dssp HT
T ss_pred hh
Confidence 63
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.93 E-value=2e-26 Score=158.67 Aligned_cols=97 Identities=18% Similarity=0.418 Sum_probs=88.0
Q ss_pred CCCCCCcccCCceecc-CceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCCCCccCCCCchh
Q 046210 4 IGTQQKCKVCEKTVYP-VEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGNFNKNFQSPAKL 82 (186)
Q Consensus 4 ~~~~~~C~~C~~~I~~-~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~ 82 (186)
++.+++|.+|+++|.. ++.|.++|+.||++||+|..|+++|.+..|+.++|++||..||.++|++
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~-------------- 67 (101)
T 2cup_A 2 SSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP-------------- 67 (101)
T ss_dssp CSCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCC--------------
T ss_pred CCCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCC--------------
Confidence 3567899999999975 7789999999999999999999999988899999999999999999965
Q ss_pred hhhhhcccccCCCCcccCCCCCCCCC-Cceeecc-cceecccccccccceeccccc
Q 046210 83 IEKLTRQDRLAKLPACYLGPKNMCFL-HKIVCPS-EKVAMESQAHHKSCFKCSHGG 136 (186)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~-~~v~~~g~~~H~~CF~C~~C~ 136 (186)
+|.. +++|.++ ..|.++|+.||++||+|..|+
T Consensus 68 ----------------------~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 68 ----------------------KCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ----------------------BCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred ----------------------ccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 8999 9999755 468899999999999999986
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.90 E-value=7.1e-25 Score=156.07 Aligned_cols=114 Identities=13% Similarity=0.229 Sum_probs=98.9
Q ss_pred CCCCCcccCCceeccCceEEeCCcccccccccccccccccc--CCCccccCCeeecCcchhhhhcccCCCCccCCCCchh
Q 046210 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLK--LSNYSSMEGVLYFKPHFEQLFKESGNFNKNFQSPAKL 82 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~ 82 (186)
...++|.+|+++|...++|.++|+.||++||+|+.|+++|. +..|+.++|++||..||.++|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-------------- 68 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-------------- 68 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC--------------
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC--------------
Confidence 45789999999998777899999999999999999999997 35799999999999999999965
Q ss_pred hhhhhcccccCCCCcccCCCCCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhh
Q 046210 83 IEKLTRQDRLAKLPACYLGPKNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLF 161 (186)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~ 161 (186)
..+|+. +++|.+.. |++.|+ ..|.++.|+.+||+|||..||.+++
T Consensus 69 --------------------~~~C~~C~~~I~~~~-~~~~g~-------------~~l~g~~f~~~~~~~yC~~~~~~~~ 114 (122)
T 1m3v_A 69 --------------------SGAGGSGGHMGSGGD-VMVVGE-------------PTLMGGEFGDEDERLITRLENTQFD 114 (122)
T ss_dssp --------------------CCSSSCSSCCSCCEE-SSSSSS-------------SSCCSCTTCCTTCCCCEECTTTTTT
T ss_pred --------------------CCccccCCCCcCchh-eEEcCC-------------cCCCCCccEecCCEeEccCcchhch
Confidence 338999 99996544 566653 3678889999999999999999999
Q ss_pred cCCCC
Q 046210 162 KEKDS 166 (186)
Q Consensus 162 ~~k~~ 166 (186)
++++.
T Consensus 115 ~~~g~ 119 (122)
T 1m3v_A 115 AANGI 119 (122)
T ss_dssp CCSCC
T ss_pred hhcCC
Confidence 98884
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.87 E-value=5.2e-23 Score=144.71 Aligned_cols=108 Identities=12% Similarity=0.173 Sum_probs=89.2
Q ss_pred CCCCCcccCCceeccCceEEeCCccccccccccccccccccC--CCccccCCeeecCcchhhhhcccCCCCccCCCCchh
Q 046210 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYFKPHFEQLFKESGNFNKNFQSPAKL 82 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~ 82 (186)
|+.++|.+|+++|...+.|.++|+.||++||+|+.|+++|.. ..|+.++|++||..||.++|++
T Consensus 1 g~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~-------------- 66 (114)
T 1j2o_A 1 GSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS-------------- 66 (114)
T ss_dssp CCCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS--------------
T ss_pred CcCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc--------------
Confidence 467899999999987778999999999999999999999985 5899999999999999999977
Q ss_pred hhhhhcccccCCCCcccCCCCCCCCC-Cceeecccceecccccccccceeccccccc-cCCCCceecCCccccHHHHhhh
Q 046210 83 IEKLTRQDRLAKLPACYLGPKNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYS-ISPSNYAALEGIWYCKHHFSKL 160 (186)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~-L~~~~~~~~~g~~yC~~cy~k~ 160 (186)
+|.. .. ++.+. |+.+ |.++.|+.+|++|||..||.++
T Consensus 67 ----------------------~c~~c~~----~~~~~---------------~~~~~~~g~~f~~~~~~~~C~~~~~~~ 105 (114)
T 1j2o_A 67 ----------------------GGHMGSG----GDVMV---------------VGEPTLMGGEFGDEDERLITRLENTQF 105 (114)
T ss_dssp ----------------------CCSSCBS----CSCCC---------------SSCSSTTSSBCCCSSSCCCEEEECTTC
T ss_pred ----------------------ccCcCCC----CceeE---------------cCCccCCCCeeEEcCCEeecchhhhcc
Confidence 4443 21 11111 2344 6777899999999999999999
Q ss_pred hcCCCCC
Q 046210 161 FKEKDSY 167 (186)
Q Consensus 161 ~~~k~~~ 167 (186)
.++++.-
T Consensus 106 ~~~~g~~ 112 (114)
T 1j2o_A 106 DAANGID 112 (114)
T ss_dssp CCTTSSC
T ss_pred ccccCCC
Confidence 8888754
No 10
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=3.3e-21 Score=127.02 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=71.4
Q ss_pred CCeeecCcchhhhhcccCCCCccCCCCchhhhhhhcccccCCCCcccCCCCCCCCC-Cceeecccceeccccccccccee
Q 046210 53 EGVLYFKPHFEQLFKESGNFNKNFQSPAKLIEKLTRQDRLAKLPACYLGPKNMCFL-HKIVCPSEKVAMESQAHHKSCFK 131 (186)
Q Consensus 53 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~ 131 (186)
+|++||..||.+++++ +|.. +++|.+ +.|.++++.||++||+
T Consensus 1 gg~~yC~~cy~~~~~~------------------------------------~C~~C~~~I~~-~~v~a~~~~~H~~CF~ 43 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAP------------------------------------RCARCSKTLTQ-GGVTYRDQPWHRECLV 43 (80)
T ss_dssp CCCCSCCCCCCCCSSC------------------------------------CCTTTCCCCCS-CCEESSSSEECTTTCB
T ss_pred CCcEEcHHHHccccCC------------------------------------cCCCCCCEecC-cEEEECCchhhhhhCC
Confidence 4789999999999855 8999 999964 6799999999999999
Q ss_pred ccccccccCCCCceecCCccccHHHHhhhhcCCCCC
Q 046210 132 CSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDSY 167 (186)
Q Consensus 132 C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~~ 167 (186)
|..|+++|.+..|++.||++||+.||.++|+++++-
T Consensus 44 C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 44 CTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred cccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 999999998888999999999999999999999853
No 11
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=3.8e-21 Score=127.30 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=71.3
Q ss_pred CeeecCcchhhhhcccCCCCccCCCCchhhhhhhcccccCCCCcccCCCCCCCCC-Cceeecccc-eeccccccccccee
Q 046210 54 GVLYFKPHFEQLFKESGNFNKNFQSPAKLIEKLTRQDRLAKLPACYLGPKNMCFL-HKIVCPSEK-VAMESQAHHKSCFK 131 (186)
Q Consensus 54 g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~~~-v~~~g~~~H~~CF~ 131 (186)
+.+||++||.+++++ +|.+ +++|.+++. |.++++.||++||+
T Consensus 2 ~~~yC~~cy~~~~~~------------------------------------~C~~C~~~I~~~~~~~~a~~~~~H~~CF~ 45 (82)
T 1x63_A 2 SSGSSGKCTTREDSP------------------------------------KCKGCFKAIVAGDQNVEYKGTVWHKDCFT 45 (82)
T ss_dssp CSCCCCCCCSCCCSC------------------------------------BCSSSCCBCCSSSCEEECSSCEEETTTCC
T ss_pred CCcCchhHHccccCC------------------------------------cCccCCcccccCceEEEECccccccccCc
Confidence 679999999999854 8999 999976554 78999999999999
Q ss_pred ccccccccCCCCceecCCccccHHHHhhhhcCCCCC
Q 046210 132 CSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDSY 167 (186)
Q Consensus 132 C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~~ 167 (186)
|..|+++|..+.|+.++|++||+.||.++|++++++
T Consensus 46 C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~~ 81 (82)
T 1x63_A 46 CSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPSS 81 (82)
T ss_dssp CSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCSC
T ss_pred hhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCCC
Confidence 999999998889999999999999999999999965
No 12
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=4e-21 Score=126.60 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=71.1
Q ss_pred CCeeecCcchhhhhcccCCCCccCCCCchhhhhhhcccccCCCCcccCCCCCCCCC-Cceeecccceeccccccccccee
Q 046210 53 EGVLYFKPHFEQLFKESGNFNKNFQSPAKLIEKLTRQDRLAKLPACYLGPKNMCFL-HKIVCPSEKVAMESQAHHKSCFK 131 (186)
Q Consensus 53 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~ 131 (186)
+|++||..||.++|++ +|.. +++|.+ +.|.++++.||++||+
T Consensus 1 gg~~yC~~~y~~~~~~------------------------------------~C~~C~~~I~~-~~v~a~~~~~H~~CF~ 43 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSP------------------------------------KCGGCNRPVLE-NYLSAMDTVWHPECFV 43 (80)
T ss_dssp CCCCCCCCCCCCCCSC------------------------------------BCTTTCCBCCS-SCEEETTEEECTTTCB
T ss_pred CCCccchhHHhhhcCC------------------------------------ccccCCCeecc-eeEEECCCeEecCcCC
Confidence 4789999999999855 8999 999965 7799999999999999
Q ss_pred ccccccccCCCCceecCCccccHHHHhhhhcCCCC
Q 046210 132 CSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 132 C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~ 166 (186)
|..|+++|.++.|+.+||++||+.||.++|+++|.
T Consensus 44 C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~ 78 (80)
T 1x3h_A 44 CGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPS 78 (80)
T ss_dssp CSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCC
T ss_pred hhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCC
Confidence 99999999888899999999999999999999985
No 13
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-21 Score=128.87 Aligned_cols=78 Identities=17% Similarity=0.417 Sum_probs=71.4
Q ss_pred CCeeecCcchhhhhcccCCCCccCCCCchhhhhhhcccccCCCCcccCCCCCCCCC-Cceee-cccceecccccccccce
Q 046210 53 EGVLYFKPHFEQLFKESGNFNKNFQSPAKLIEKLTRQDRLAKLPACYLGPKNMCFL-HKIVC-PSEKVAMESQAHHKSCF 130 (186)
Q Consensus 53 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~-~~~~v~~~g~~~H~~CF 130 (186)
+|++||..||.++|++ +|.. +++|. ++..|.++++.||++||
T Consensus 1 ~g~~yC~~~y~~~~~~------------------------------------~C~~C~~~I~~~~~~~~a~~~~~H~~CF 44 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFAN------------------------------------TCAECQQLIGHDSRELFYEDRHFHEGCF 44 (82)
T ss_dssp CCCCCCCCCCCCCCSC------------------------------------BCTTTCCBCCSSCCBCCCSSCCCBTTTS
T ss_pred CCceechhHhCcccCC------------------------------------cCccCCCccccCcEEEEeCCccccccCC
Confidence 5889999999999955 8999 99997 35667789999999999
Q ss_pred eccccccccCCCCceecCCccccHHHHhhhhcCCCC
Q 046210 131 KCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 131 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~ 166 (186)
+|..|+++|.+..|+..+|+|||+.||.++|+++|.
T Consensus 45 ~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 45 RCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp BCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSC
T ss_pred eecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCC
Confidence 999999999988999999999999999999999984
No 14
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=3e-20 Score=122.77 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=68.3
Q ss_pred CCeeecCcchhhhhcccCCCCccCCCCchhhhhhhcccccCCCCcccCCCCCCCCC-Cceeecccceeccccccccccee
Q 046210 53 EGVLYFKPHFEQLFKESGNFNKNFQSPAKLIEKLTRQDRLAKLPACYLGPKNMCFL-HKIVCPSEKVAMESQAHHKSCFK 131 (186)
Q Consensus 53 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~ 131 (186)
+|++||+.||. +++ ++|.. +++|. ++.|.++++.||++||+
T Consensus 2 ~g~~yC~~~y~-~~~------------------------------------~~C~~C~~~I~-~~~~~a~~~~~H~~CF~ 43 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATL------------------------------------EKCATCSQPIL-DRILRAMGKAYHPGCFT 43 (81)
T ss_dssp CCCCCCCCCCC-SSC------------------------------------CBCTTTCCBCC-SCCEEETTEEECTTTCB
T ss_pred cCCEECHHHhh-cCC------------------------------------CccccCCCeec-ceeEEECCccccHHhcC
Confidence 68999999998 563 48999 99996 56789999999999999
Q ss_pred ccccccccCCCCceec-CCccccHHHHhhhhcCCCC
Q 046210 132 CSHGGYSISPSNYAAL-EGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 132 C~~C~~~L~~~~~~~~-~g~~yC~~cy~k~~~~k~~ 166 (186)
|..|+++|.+..|+.. ||+|||+.||.++|+++|.
T Consensus 44 C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~ 79 (81)
T 2dlo_A 44 CVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPS 79 (81)
T ss_dssp CSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSC
T ss_pred cccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCC
Confidence 9999999988878776 7999999999999999984
No 15
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=7.5e-20 Score=119.39 Aligned_cols=70 Identities=33% Similarity=0.626 Sum_probs=65.7
Q ss_pred CCCCCCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecC-cchhhhhcccC
Q 046210 1 MSFIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFK-PHFEQLFKESG 70 (186)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~-~cy~~~~~~~~ 70 (186)
|+|++..++|.+|+++|..++.|.++|+.||++||+|..|+++|....|+.+++++||. .||.++|+++|
T Consensus 3 ~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc 73 (76)
T 2cu8_A 3 SGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGP 73 (76)
T ss_dssp CSCCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSC
T ss_pred cccCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhccccc
Confidence 57889999999999999889999999999999999999999999998899999999999 79999998754
No 16
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.79 E-value=3.8e-20 Score=122.26 Aligned_cols=70 Identities=29% Similarity=0.667 Sum_probs=58.4
Q ss_pred CCCCCCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccC
Q 046210 1 MSFIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESG 70 (186)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~ 70 (186)
|.|+++.++|.+|+++|..++.|.++|+.||++||+|..|+++|....|+.+++++||..||.++|+++|
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c 70 (81)
T 1a7i_A 1 MPNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKG 70 (81)
T ss_dssp -------CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC---
T ss_pred CCCCCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcc
Confidence 8899999999999999988999999999999999999999999999899999999999999999998744
No 17
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=2.6e-19 Score=120.76 Aligned_cols=76 Identities=36% Similarity=0.661 Sum_probs=70.9
Q ss_pred CCCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCCCCccccccccc
Q 046210 102 PKNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDSYNHLIKFASMK 177 (186)
Q Consensus 102 ~~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~~~~~~~~~~~~ 177 (186)
..++|.. +++|.+.+.|.++++.||++||+|..|+++|....|+.+||++||+.||.++|+++|.|++.++..+++
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~~~~~ 90 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSGPSS 90 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCCCCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCCCCCC
Confidence 3569999 999988888999999999999999999999988889999999999999999999999999999988765
No 18
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1.4e-19 Score=119.42 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=68.2
Q ss_pred CeeecCcchhhhhcccCCCCccCCCCchhhhhhhcccccCCCCcccCCCCCCCCC-Cceeecccceecccccccccceec
Q 046210 54 GVLYFKPHFEQLFKESGNFNKNFQSPAKLIEKLTRQDRLAKLPACYLGPKNMCFL-HKIVCPSEKVAMESQAHHKSCFKC 132 (186)
Q Consensus 54 g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C 132 (186)
+.+||+.||.++|++ +|.. +++|. ++.|.++++.||++||+|
T Consensus 2 ~~~yC~~~y~~~~~~------------------------------------~C~~C~~~I~-~~~~~a~~~~~H~~CF~C 44 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGE------------------------------------FCHGCSLLMT-GPFMVAGEFKYHPECFAC 44 (81)
T ss_dssp CCCCCCCCSSCCSSC------------------------------------BCTTTCCBCC-SCCBCCTTCCBCTTSCBC
T ss_pred CCccchhHHhhhcCC------------------------------------cCccCCCCcC-ceEEEECCceeccccCCc
Confidence 579999999999965 8999 99996 777999999999999999
Q ss_pred cccccccC-CCCce-ecCCccccHHHHhhhhcCCCC
Q 046210 133 SHGGYSIS-PSNYA-ALEGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 133 ~~C~~~L~-~~~~~-~~~g~~yC~~cy~k~~~~k~~ 166 (186)
..|+++|. +..|. +.+|+|||+.||.++|+++++
T Consensus 45 ~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 45 MSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp TTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred cCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 99999995 46677 589999999999999999875
No 19
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=2.4e-19 Score=120.99 Aligned_cols=76 Identities=47% Similarity=0.982 Sum_probs=70.5
Q ss_pred CCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCCCCccCCCCc
Q 046210 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGNFNKNFQSPA 80 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~ 80 (186)
...++|.+|+++|...+.|.++++.||++||+|..|+++|....|+.+++++||..||.++|+++|++.++++..+
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~~~ 88 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSGP 88 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCCCC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCCCC
Confidence 3568999999999888999999999999999999999999998899999999999999999999999988887654
No 20
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-19 Score=118.51 Aligned_cols=72 Identities=19% Similarity=0.328 Sum_probs=65.0
Q ss_pred CCeeecCcchhhhhcccCCCCccCCCCchhhhhhhcccccCCCCcccCCCCCCCCC-Cceeec----ccceecccccccc
Q 046210 53 EGVLYFKPHFEQLFKESGNFNKNFQSPAKLIEKLTRQDRLAKLPACYLGPKNMCFL-HKIVCP----SEKVAMESQAHHK 127 (186)
Q Consensus 53 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~----~~~v~~~g~~~H~ 127 (186)
.+++||..||.++|++ +|++ +++|.+ .+.|.++++.||+
T Consensus 1 g~~~yC~~cy~~~~~~------------------------------------~C~~C~~~I~~~g~~~~~~~a~~~~~H~ 44 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAK------------------------------------KCAGCKNPITGFGKGSSVVAYEGQSWHD 44 (77)
T ss_dssp CCSSCCTTCCCSCCCC------------------------------------CCSSSCCCCCCCSSCCCEEEETTEEEET
T ss_pred CCCeEchhHhchhhCc------------------------------------cCcccCCcccCCCCCceeEEECcceeCc
Confidence 3689999999999955 8999 999973 4778999999999
Q ss_pred cceeccccccccCCCCceecCCccccHHHHhhh
Q 046210 128 SCFKCSHGGYSISPSNYAALEGIWYCKHHFSKL 160 (186)
Q Consensus 128 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~ 160 (186)
+||+|..|+++|.+..|+..+|+|||+.||.++
T Consensus 45 ~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 45 YCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp TTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred ccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 999999999999988899999999999999764
No 21
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=9.2e-19 Score=115.38 Aligned_cols=67 Identities=28% Similarity=0.534 Sum_probs=61.4
Q ss_pred CCCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCC
Q 046210 4 IGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGN 71 (186)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~ 71 (186)
.++.++|.+|+++|+.++.|.++++.||++||+|..|+++|.+ .|+.++|++||..||.++|+++|+
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~ 78 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPS 78 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCST
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCC
Confidence 4567899999999988899999999999999999999999986 799999999999999999988553
No 22
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=2.3e-18 Score=110.14 Aligned_cols=65 Identities=17% Similarity=0.474 Sum_probs=59.9
Q ss_pred CCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccC
Q 046210 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESG 70 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~ 70 (186)
..+++|.+|+++|. ++.|.++|+.||++||+|..|+++|.+..|+.+++++||..||.++|+++|
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 67 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPS 67 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSC
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCC
Confidence 45789999999995 678999999999999999999999998899999999999999999998744
No 23
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=2.5e-18 Score=112.24 Aligned_cols=70 Identities=26% Similarity=0.570 Sum_probs=62.3
Q ss_pred CCCCCCCCCcccCCceeccCc-eEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccC
Q 046210 1 MSFIGTQQKCKVCEKTVYPVE-QLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESG 70 (186)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~-~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~ 70 (186)
|+.....++|.+|+++|...+ ++.++|+.||++||+|..|+++|..+.|+.++|++||..||.++|+++|
T Consensus 5 ~~~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C 75 (77)
T 1g47_A 5 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCW 75 (77)
T ss_dssp CCSCCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC-
T ss_pred hccCCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhccc
Confidence 345677899999999998655 5789999999999999999999999899999999999999999998855
No 24
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=2.9e-18 Score=109.94 Aligned_cols=65 Identities=20% Similarity=0.500 Sum_probs=59.8
Q ss_pred CCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccC
Q 046210 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESG 70 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~ 70 (186)
..+++|.+|+++|. ++.|.++|+.||++||+|..|+++|.+..|+.+++++||..||.++|+++|
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c 67 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGP 67 (70)
T ss_dssp CCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCC
T ss_pred CCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhcccc
Confidence 45689999999995 677999999999999999999999999899999999999999999998855
No 25
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=5.8e-18 Score=110.32 Aligned_cols=67 Identities=28% Similarity=0.479 Sum_probs=61.8
Q ss_pred CCCCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccH-HHHhhhhcCCCCC
Q 046210 101 GPKNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCK-HHFSKLFKEKDSY 167 (186)
Q Consensus 101 ~~~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~-~cy~k~~~~k~~~ 167 (186)
+..++|.. +++|.+++.|.++++.||++||+|..|+++|.+..|+++||++||+ .||.++|+++|..
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 34679999 9999878899999999999999999999999988899999999999 7999999999953
No 26
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.72 E-value=2.2e-18 Score=109.31 Aligned_cols=62 Identities=23% Similarity=0.500 Sum_probs=58.4
Q ss_pred CCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcc
Q 046210 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKE 68 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~ 68 (186)
.+++|.+|+++|. ++.|.++|+.||++||+|..|+++|.+..|+.++|++||..||.++|++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCC
Confidence 3589999999996 8889999999999999999999999998999999999999999999976
No 27
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=6e-18 Score=108.52 Aligned_cols=65 Identities=17% Similarity=0.384 Sum_probs=60.3
Q ss_pred CCCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhccc
Q 046210 4 IGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKES 69 (186)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~ 69 (186)
+++.++|.+|+++|. ++.|.++|+.||++||+|..|+++|....|+.++|++||..||.++|+++
T Consensus 2 s~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 66 (70)
T 2d8x_A 2 SSGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66 (70)
T ss_dssp CCCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCC
T ss_pred CCCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCC
Confidence 467889999999995 68899999999999999999999999999999999999999999999773
No 28
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=6.2e-18 Score=110.21 Aligned_cols=63 Identities=33% Similarity=0.735 Sum_probs=58.9
Q ss_pred CCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecC-cchhhhhcccC
Q 046210 8 QKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFK-PHFEQLFKESG 70 (186)
Q Consensus 8 ~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~-~cy~~~~~~~~ 70 (186)
++|.+|+++|..++.|.++|+.||++||+|..|+++|....|+.++|++||. .||.++|+++|
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C 64 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKG 64 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccC
Confidence 5799999999878999999999999999999999999998999999999999 69999997743
No 29
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=5.6e-18 Score=113.98 Aligned_cols=66 Identities=26% Similarity=0.556 Sum_probs=61.0
Q ss_pred CCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCC
Q 046210 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGN 71 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~ 71 (186)
...++|.+|+++| .++.|.++|+.||++||+|..|+++|....|+.+++++||..||.++|+++|+
T Consensus 23 ~~~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~ 88 (90)
T 2dar_A 23 KRTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPS 88 (90)
T ss_dssp TCCCBBSSSCCBC-CSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCC
T ss_pred CCCCCCccCCCEe-cceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCC
Confidence 4568899999999 58889999999999999999999999998999999999999999999988654
No 30
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.71 E-value=3.1e-18 Score=112.97 Aligned_cols=70 Identities=23% Similarity=0.439 Sum_probs=56.7
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCC-CCCcccc
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKD-SYNHLIK 172 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~-~~~~~~~ 172 (186)
.++|.. +++|.+++.|.+.++.||++||+|..|+++|....|+.+||++||+.||.++|+++| .+.++.+
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~~ 78 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAG 78 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-----------
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCccc
Confidence 568999 999988888999999999999999999999988889999999999999999999999 4444433
No 31
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=5.1e-18 Score=110.65 Aligned_cols=66 Identities=14% Similarity=0.366 Sum_probs=60.0
Q ss_pred CCCCcccCCceecc---CceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCC
Q 046210 6 TQQKCKVCEKTVYP---VEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGN 71 (186)
Q Consensus 6 ~~~~C~~C~~~I~~---~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~ 71 (186)
.+++|.+|+++|.. .+.|.++|+.||++||+|..|+++|.+..|+.+++++||..||.++|+++|+
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~ 72 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISG 72 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSS
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCC
Confidence 35899999999963 3789999999999999999999999988999999999999999999988554
No 32
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=4.4e-18 Score=109.68 Aligned_cols=66 Identities=29% Similarity=0.639 Sum_probs=60.5
Q ss_pred CCCCcccCCceeccC-ceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCC
Q 046210 6 TQQKCKVCEKTVYPV-EQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGN 71 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~-~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~ 71 (186)
.+++|.+|+++|..+ ++|.++|+.||++||+|..|+++|....|+.++|++||..||.++|+++|+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPS 70 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCC
Confidence 468999999999775 688999999999999999999999999999999999999999999988553
No 33
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=6.9e-18 Score=108.72 Aligned_cols=66 Identities=20% Similarity=0.578 Sum_probs=60.3
Q ss_pred CCCCcccCCceeccC-ceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCC
Q 046210 6 TQQKCKVCEKTVYPV-EQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGN 71 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~-~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~ 71 (186)
.+++|.+|+++|... .+|.++|+.||++||+|..|+++|....|+.++|++||..||.++|+++|+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPS 70 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCC
Confidence 458999999999876 478999999999999999999999999999999999999999999988553
No 34
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=5.2e-18 Score=109.39 Aligned_cols=66 Identities=15% Similarity=0.322 Sum_probs=59.7
Q ss_pred CCCCCCcccCCceecc---CceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhccc
Q 046210 4 IGTQQKCKVCEKTVYP---VEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKES 69 (186)
Q Consensus 4 ~~~~~~C~~C~~~I~~---~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~ 69 (186)
+...++|.+|+++|.. .++|.++|+.||++||+|..|+++|.+..|+.++|++||..||.++|+|+
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~ 70 (72)
T 1x4l_A 2 SSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPS 70 (72)
T ss_dssp CSCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSS
T ss_pred CCCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCC
Confidence 3567899999999974 36799999999999999999999999989999999999999999999773
No 35
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.6e-17 Score=109.42 Aligned_cols=64 Identities=20% Similarity=0.432 Sum_probs=59.6
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCCC
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDSY 167 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~~ 167 (186)
.++|.. +++|.+++.|.++++.||++||+|..|+++|.+ .|+++||+|||+.||.++|+++|+.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 568999 999988889999999999999999999999985 6999999999999999999999953
No 36
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=7.8e-18 Score=111.04 Aligned_cols=76 Identities=17% Similarity=0.339 Sum_probs=66.4
Q ss_pred CeeecCcchhhhhcccCCCCccCCCCchhhhhhhcccccCCCCcccCCCCCCCCC-Cceeecccceecccccccccceec
Q 046210 54 GVLYFKPHFEQLFKESGNFNKNFQSPAKLIEKLTRQDRLAKLPACYLGPKNMCFL-HKIVCPSEKVAMESQAHHKSCFKC 132 (186)
Q Consensus 54 g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C 132 (186)
..+||..||.++|++ +|+. +++|. ++.|.++++.||++||+|
T Consensus 2 ~~~yC~~dy~~~~~~------------------------------------~C~~C~~~I~-~~~v~a~~~~wH~~CF~C 44 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGT------------------------------------RCFSCDQFIE-GEVVSALGKTYHPDCFVC 44 (81)
T ss_dssp CCCCCCSCGGGSCCC------------------------------------BCTTTCCBCC-SCCEEETTEEECTTTSSC
T ss_pred CCCcchHHHHhHhCC------------------------------------cCccccCEec-cceEEECCceeCccCCcc
Confidence 458999999999965 8999 99996 678999999999999999
Q ss_pred cccccccCCCCceecCCc-cccHHHHhhhhcCCCC
Q 046210 133 SHGGYSISPSNYAALEGI-WYCKHHFSKLFKEKDS 166 (186)
Q Consensus 133 ~~C~~~L~~~~~~~~~g~-~yC~~cy~k~~~~k~~ 166 (186)
..|+++|..+.++..++. +||..||.++++..++
T Consensus 45 ~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~~s 79 (81)
T 1v6g_A 45 AVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSGPS 79 (81)
T ss_dssp SSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCCCC
T ss_pred ccCCCCCCCCCEEEeCCCCEEChhhhcccCCCCCC
Confidence 999999987777776665 6999999999888764
No 37
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=8.3e-18 Score=111.27 Aligned_cols=66 Identities=30% Similarity=0.687 Sum_probs=60.1
Q ss_pred CCCCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCcc--ccCCeeecCcchhhhhcc
Q 046210 3 FIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYS--SMEGVLYFKPHFEQLFKE 68 (186)
Q Consensus 3 ~~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~--~~~g~~yC~~cy~~~~~~ 68 (186)
..++.++|.+|+++|+..+.|.++|+.||++||+|..|+++|....|+ +++|++||..||.++|++
T Consensus 11 ~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 11 EAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp CCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcC
Confidence 356788999999999888999999999999999999999999999887 479999999999998854
No 38
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=7.2e-18 Score=110.75 Aligned_cols=65 Identities=17% Similarity=0.332 Sum_probs=59.6
Q ss_pred CCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccC
Q 046210 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESG 70 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~ 70 (186)
...++|.+|+++|+ ++.|.++++.||++||+|..|+++|....|+.+++++||..||.++|++++
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCC
T ss_pred CCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 34679999999996 578999999999999999999999998889999999999999999998854
No 39
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.69 E-value=1.6e-17 Score=105.30 Aligned_cols=61 Identities=18% Similarity=0.361 Sum_probs=57.1
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCC
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEK 164 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k 164 (186)
.++|++ +++|. ++.|.++|+.||++||+|..|+++|.+..|++.||++||+.||.++|++|
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 458999 99997 77899999999999999999999999889999999999999999999986
No 40
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.1e-17 Score=109.08 Aligned_cols=67 Identities=27% Similarity=0.552 Sum_probs=61.0
Q ss_pred CCCCCcccCCceeccCc-eEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCC
Q 046210 5 GTQQKCKVCEKTVYPVE-QLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGN 71 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~-~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~ 71 (186)
..+++|.+|+++|..++ .|.++|+.||++||+|..|+++|....|+.+++++||..||.++|+++++
T Consensus 13 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 13 EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred ccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 34689999999997766 58999999999999999999999999999999999999999999988664
No 41
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=3.5e-17 Score=104.63 Aligned_cols=63 Identities=21% Similarity=0.507 Sum_probs=58.5
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCC
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~ 166 (186)
.++|.. +++|. ++.|.++++.||++||+|..|+++|.+..|++.||++||+.||.++|++++.
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 68 (69)
T 2cur_A 5 SSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSS 68 (69)
T ss_dssp CCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCC
T ss_pred cCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCC
Confidence 468999 99995 5679999999999999999999999988899999999999999999999984
No 42
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=4.7e-17 Score=104.24 Aligned_cols=63 Identities=25% Similarity=0.503 Sum_probs=58.4
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCC
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~ 166 (186)
.++|.. +++|. .+.|.++++.||++||+|..|+++|.+..|+++||++||+.||.++|++++.
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 68 (70)
T 2d8z_A 5 SSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPS 68 (70)
T ss_dssp CCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCT
T ss_pred CCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccC
Confidence 458999 99996 5669999999999999999999999888999999999999999999999985
No 43
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.5e-17 Score=110.58 Aligned_cols=65 Identities=25% Similarity=0.440 Sum_probs=59.4
Q ss_pred CCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccC
Q 046210 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESG 70 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~ 70 (186)
...++|.+|++.|. ++.|.++++.||++||+|..|+++|....|+.+++++||..||.++|++++
T Consensus 23 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~ 87 (89)
T 1x64_A 23 QRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87 (89)
T ss_dssp CSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCC
T ss_pred CcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 34578999999996 588999999999999999999999999899999999999999999998854
No 44
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=4.9e-17 Score=104.69 Aligned_cols=64 Identities=23% Similarity=0.480 Sum_probs=59.1
Q ss_pred CCCCCC-Cceeecc-cceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCC
Q 046210 103 KNMCFL-HKIVCPS-EKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 103 ~~~C~~-~~~I~~~-~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~ 166 (186)
.++|.. +++|.+. +.|.+.++.||++||+|..|+++|.+..|+..+|++||+.||.++|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPS 70 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCC
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCC
Confidence 458999 9999774 678899999999999999999999888899999999999999999999995
No 45
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.2e-17 Score=107.19 Aligned_cols=64 Identities=23% Similarity=0.525 Sum_probs=59.2
Q ss_pred CCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccC
Q 046210 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESG 70 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~ 70 (186)
.+++|.+|+++|. ++.|.++|+.||++||+|+.|+++|..+.|+.+++++||..||.++|+++|
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C 77 (80)
T 1x3h_A 14 FSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGP 77 (80)
T ss_dssp CSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSC
T ss_pred cCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCC
Confidence 4689999999996 588999999999999999999999999899999999999999999998744
No 46
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.4e-17 Score=107.41 Aligned_cols=67 Identities=24% Similarity=0.523 Sum_probs=59.8
Q ss_pred CCCCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCcccc-CCeeecCcchhhhhcccC
Q 046210 3 FIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSM-EGVLYFKPHFEQLFKESG 70 (186)
Q Consensus 3 ~~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~~~~~~ 70 (186)
|....++|.+|+++|. ++.|.++|+.||++||+|..|+++|.+..|... +|++||..||.++|+++|
T Consensus 11 y~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C 78 (81)
T 2dlo_A 11 YVATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGP 78 (81)
T ss_dssp CCSSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSS
T ss_pred hhcCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcC
Confidence 4457789999999996 678999999999999999999999998888765 789999999999998854
No 47
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=6.7e-17 Score=108.67 Aligned_cols=64 Identities=19% Similarity=0.433 Sum_probs=59.4
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCCC
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDSY 167 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~~ 167 (186)
.++|.. +++| .++.|.++++.||++||+|..|+++|.+..|++.+|++||+.||.++|+++|+.
T Consensus 25 ~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 25 TPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CCBBSSSCCBC-CSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCccCCCEe-cceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 568999 9999 577899999999999999999999999888999999999999999999999953
No 48
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.9e-17 Score=105.88 Aligned_cols=66 Identities=27% Similarity=0.430 Sum_probs=61.1
Q ss_pred CCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccH-HHHhhhhcCCCCCCcc
Q 046210 105 MCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCK-HHFSKLFKEKDSYNHL 170 (186)
Q Consensus 105 ~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~-~cy~k~~~~k~~~~~~ 170 (186)
+|.. +++|.+++.|.++|+.||++||+|..|+++|.++.|++.||++||+ .||.++|+++|....+
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~ 69 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGG 69 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCC
T ss_pred cCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCC
Confidence 7999 9999878889999999999999999999999888899999999999 6999999999976654
No 49
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=6.1e-17 Score=104.32 Aligned_cols=63 Identities=13% Similarity=0.284 Sum_probs=57.8
Q ss_pred CCCCCC-Cceeec---ccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCC
Q 046210 103 KNMCFL-HKIVCP---SEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKD 165 (186)
Q Consensus 103 ~~~C~~-~~~I~~---~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~ 165 (186)
.++|.. +++|.+ .+.|.++++.||++||+|..|+++|.+..|+.+||++||+.||.++|+++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 468999 999974 467889999999999999999999998889999999999999999999986
No 50
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=3.3e-17 Score=107.60 Aligned_cols=65 Identities=20% Similarity=0.382 Sum_probs=58.1
Q ss_pred CCCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccC
Q 046210 4 IGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESG 70 (186)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~ 70 (186)
....++|.+|+++|. ++.|.++|+.||++||+|..|+++|.... +.++|++||..||.++|+|.+
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~ 76 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGP 76 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSS
T ss_pred ccCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCC
Confidence 345689999999996 78899999999999999999999999875 588999999999999998743
No 51
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=5.1e-17 Score=106.78 Aligned_cols=66 Identities=21% Similarity=0.477 Sum_probs=60.1
Q ss_pred CCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccCC
Q 046210 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESGN 71 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~~ 71 (186)
..+++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||..||.++|+++++
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 78 (80)
T 2cuq_A 13 KFAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPS 78 (80)
T ss_dssp CSSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTT
T ss_pred ccCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCC
Confidence 35689999999995 5789999999999999999999999988999999999999999999988553
No 52
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=6.5e-17 Score=104.13 Aligned_cols=64 Identities=19% Similarity=0.428 Sum_probs=59.0
Q ss_pred CCCCCC-Cceeecc-cceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCC
Q 046210 103 KNMCFL-HKIVCPS-EKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 103 ~~~C~~-~~~I~~~-~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~ 166 (186)
.++|.. +++|.+. ..|.++|+.||++||+|..|+++|.+..|+++||++||+.||.++|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPS 70 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCC
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCC
Confidence 458999 9999876 478899999999999999999999888999999999999999999999985
No 53
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-17 Score=107.78 Aligned_cols=66 Identities=17% Similarity=0.461 Sum_probs=59.7
Q ss_pred CCCCCcccCCceecc-CceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcccC
Q 046210 5 GTQQKCKVCEKTVYP-VEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKESG 70 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~-~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~~ 70 (186)
..+++|.+|+++|.. +.+|.++|+.||++||+|+.|+++|.+..|+.+++++||..||.++|+++|
T Consensus 13 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C 79 (82)
T 2ehe_A 13 TFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGP 79 (82)
T ss_dssp CCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSS
T ss_pred ccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCC
Confidence 346799999999974 557889999999999999999999999899999999999999999998855
No 54
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=5e-17 Score=104.70 Aligned_cols=64 Identities=22% Similarity=0.463 Sum_probs=58.3
Q ss_pred CCCCCcccCCceeccC-ceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcc
Q 046210 5 GTQQKCKVCEKTVYPV-EQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKE 68 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~-~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~ 68 (186)
.++++|.+|+++|... ..|.++|+.||++||+|..|+++|.+..|+.+++++||..||.++|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 4568999999999765 479999999999999999999999888899999999999999999854
No 55
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=3.8e-17 Score=106.48 Aligned_cols=67 Identities=13% Similarity=0.314 Sum_probs=60.5
Q ss_pred CCCCCC-Cceeec---ccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCCCCc
Q 046210 103 KNMCFL-HKIVCP---SEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDSYNH 169 (186)
Q Consensus 103 ~~~C~~-~~~I~~---~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~~~~ 169 (186)
.++|.. +++|.+ .+.|.++++.||++||+|..|+++|.+..|++.||+|||+.||.++|++++....
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 458999 999973 4778999999999999999999999988899999999999999999999996543
No 56
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=6.9e-17 Score=104.48 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=56.4
Q ss_pred CCCCcccCCceeccCceEEeCCcccccccccccccccccc-CCCccccCCeeecCcchhhhhcc
Q 046210 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLK-LSNYSSMEGVLYFKPHFEQLFKE 68 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~~~~ 68 (186)
.+++|++|+++|. ++.|.++|+.||++||+|..|+++|. +..|+.+++++||..||.++++.
T Consensus 4 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp SCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred CcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 4689999999995 58899999999999999999999998 66788899999999999998854
No 57
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=6.3e-17 Score=106.19 Aligned_cols=63 Identities=19% Similarity=0.348 Sum_probs=58.4
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCC
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~ 166 (186)
.++|.. +++|.. +.|.++++.||++||+|..|+++|....|+++||++||+.||.++|++++.
T Consensus 15 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 569999 999964 679999999999999999999999887899999999999999999999984
No 58
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.65 E-value=7.3e-17 Score=103.68 Aligned_cols=63 Identities=27% Similarity=0.691 Sum_probs=57.6
Q ss_pred CCCCCcccCCceeccCce-EEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 5 GTQQKCKVCEKTVYPVEQ-LSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~-i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
...++|.+|+++|...+. +.+.|+.||++||+|..|+++|..+.|+.++|++||..||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 356799999999987775 689999999999999999999999889999999999999999884
No 59
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=2.6e-16 Score=105.58 Aligned_cols=64 Identities=20% Similarity=0.374 Sum_probs=58.9
Q ss_pred CCCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCC
Q 046210 102 PKNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 102 ~~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~ 166 (186)
..++|.. +++|.+ +.|.++++.||++||+|..|+++|....|+.+||++||+.||.++|++|+.
T Consensus 24 ~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred cCCCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 3568999 999964 778999999999999999999999888899999999999999999999984
No 60
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.7e-16 Score=111.29 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=60.3
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCC--CCceecCCccccHHHHhhhhcCCCCCCc
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISP--SNYAALEGIWYCKHHFSKLFKEKDSYNH 169 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~k~~~~k~~~~~ 169 (186)
.++|.+ +++|.+.+.|.++++.||++||+|..|+++|.. ..|+.+||+|||+.||.++|+++|....
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~ 72 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGS 72 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCB
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCC
Confidence 468999 999987778999999999999999999999974 5799999999999999999999985443
No 61
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.4e-16 Score=100.98 Aligned_cols=63 Identities=13% Similarity=0.307 Sum_probs=58.0
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCC
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~ 166 (186)
.++|.. +++|. ++.|.++++.||++||+|..|+++|....|+..||++||+.||.++|+++..
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp SSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 568999 99996 5779999999999999999999999888899999999999999999999874
No 62
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.3e-16 Score=103.97 Aligned_cols=64 Identities=27% Similarity=0.453 Sum_probs=56.9
Q ss_pred CCCCCC-Cceeecccc-eecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCC
Q 046210 103 KNMCFL-HKIVCPSEK-VAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~-v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~ 166 (186)
.++|.+ +++|.+.+. +.+.|+.||++||+|..|+++|..+.|+..||++||+.||.++|+++|.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 568999 999986554 5799999999999999999999888899999999999999999999984
No 63
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=113.27 Aligned_cols=61 Identities=23% Similarity=0.480 Sum_probs=56.0
Q ss_pred CCCcccCCceeccCceEEeCCcccccccccccccccccc--CCCccccCCeeecCcchhhhhc
Q 046210 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLK--LSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
.++|.+|+++|+..++|.++|+.||++||+|..|+++|. +..|+.++|++||..||.++|+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 578999999998777899999999999999999999997 3589999999999999999984
No 64
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.2e-16 Score=104.40 Aligned_cols=64 Identities=22% Similarity=0.554 Sum_probs=58.2
Q ss_pred CCCCCCC-CceeecccceecccccccccceeccccccccCCCCce--ecCCccccHHHHhhhhcCCC
Q 046210 102 PKNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYA--ALEGIWYCKHHFSKLFKEKD 165 (186)
Q Consensus 102 ~~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~--~~~g~~yC~~cy~k~~~~k~ 165 (186)
..++|.+ +++|++.+.|.++++.||++||+|..|+++|....|+ ++||++||+.||.++|+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 4679999 9999888999999999999999999999999888887 47999999999999987754
No 65
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.61 E-value=2.4e-16 Score=99.60 Aligned_cols=59 Identities=22% Similarity=0.609 Sum_probs=54.1
Q ss_pred CCCcccCCceecc-CceEEeCCcccc--ccccccccccccccCCCccccCCeeec-Ccchhhh
Q 046210 7 QQKCKVCEKTVYP-VEQLSADGIVYH--KSCFKCSHCKGTLKLSNYSSMEGVLYF-KPHFEQL 65 (186)
Q Consensus 7 ~~~C~~C~~~I~~-~~~i~~~g~~~H--~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~cy~~~ 65 (186)
+++|.+|+++|.. ++.|.++|+.|| ++||+|+.|+++|.+..|+.++|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4789999999976 478999999999 999999999999999899999999999 8888765
No 66
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=8.4e-16 Score=100.84 Aligned_cols=62 Identities=23% Similarity=0.432 Sum_probs=56.4
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCC
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDS 166 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~ 166 (186)
.++|.. +++|. ++.|.++|+.||++||+|..|+++|.+. ++++||++||+.||.++|+++.+
T Consensus 15 ~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSCCSSC
T ss_pred CCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCCCCCC
Confidence 568999 99996 6779999999999999999999999877 45899999999999999999874
No 67
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.7e-16 Score=101.37 Aligned_cols=61 Identities=20% Similarity=0.465 Sum_probs=55.1
Q ss_pred CCCCCcccCCceecc----CceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhh
Q 046210 5 GTQQKCKVCEKTVYP----VEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQL 65 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~----~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 65 (186)
..+++|++|+++|.+ .+.|.++|+.||++||+|..|+++|.+..|+.++|++||..||.++
T Consensus 13 ~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 13 FVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred hhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 346899999999973 3789999999999999999999999998999999999999999764
No 68
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=8.5e-16 Score=98.86 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=55.5
Q ss_pred CCCCCC-Cceeecc-cceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcC
Q 046210 103 KNMCFL-HKIVCPS-EKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKE 163 (186)
Q Consensus 103 ~~~C~~-~~~I~~~-~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~ 163 (186)
.++|.+ +++|.+. ..|.++++.||++||+|..|+++|.+..|+.+||++||+.||.++|++
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 468999 9999764 478899999999999999999999888899999999999999999964
No 69
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.59 E-value=9e-16 Score=105.07 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=61.8
Q ss_pred CCCCCC-Cceeec-ccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCCCCcc
Q 046210 103 KNMCFL-HKIVCP-SEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDSYNHL 170 (186)
Q Consensus 103 ~~~C~~-~~~I~~-~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~~~~~ 170 (186)
.++|.+ +++|.. ++.|.++|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|.....
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~ 74 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFK 74 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCC
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCC
Confidence 468999 999974 77889999999999999999999998888999999999999999999999966644
No 70
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.59 E-value=6.1e-16 Score=109.83 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=61.2
Q ss_pred CCCCC-Cceeeccc-ceecccccccccceecccccccc-CCCCceecCCccccHHHHhhhhcCCCCCCccccc
Q 046210 104 NMCFL-HKIVCPSE-KVAMESQAHHKSCFKCSHGGYSI-SPSNYAALEGIWYCKHHFSKLFKEKDSYNHLIKF 173 (186)
Q Consensus 104 ~~C~~-~~~I~~~~-~v~~~g~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~k~~~~k~~~~~~~~~ 173 (186)
++|.. +++|...+ .|.+.++.||++||+|..|+++| .+..|+..+|++||+.||.++|++++.|+.+.+.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~ 81 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGS 81 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCc
Confidence 38999 99997644 46899999999999999999999 5567999999999999999999999988776543
No 71
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=7.3e-16 Score=101.44 Aligned_cols=63 Identities=21% Similarity=0.428 Sum_probs=56.3
Q ss_pred CCCCcccCCceeccCceEEeCCccccccccccccccccccC-CCcc-ccCCeeecCcchhhhhccc
Q 046210 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKL-SNYS-SMEGVLYFKPHFEQLFKES 69 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~-~~~~-~~~g~~yC~~cy~~~~~~~ 69 (186)
.+++|.+|+++|. ++.|.++++.||++||+|..|+++|.. ..|. +.++++||..||.++|++.
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~ 78 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGP 78 (81)
T ss_dssp SSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTT
T ss_pred cCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCC
Confidence 5689999999996 788999999999999999999999975 4666 5899999999999999763
No 72
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.59 E-value=1e-15 Score=108.88 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=62.4
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCCCCcc
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDSYNHL 170 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~~~~~ 170 (186)
.++|.+ +++|.+++.+.++|+.||++||+|..|+++|.+..|+++||++||+.||.++|+++|.....
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~ 71 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHN 71 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCS
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCC
Confidence 458999 99998788899999999999999999999999888999999999999999999999965544
No 73
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.3e-15 Score=98.49 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=55.7
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccC-CCCceecCCccccHHHHhhhhcCCC
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSIS-PSNYAALEGIWYCKHHFSKLFKEKD 165 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~k~~~~k~ 165 (186)
.++|++ +++|. ++.|.++++.||++||+|..|+++|. +..|+..+|++||..||.++++++-
T Consensus 5 ~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~~ 68 (73)
T 1wig_A 5 SSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDS 68 (73)
T ss_dssp CCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSSC
T ss_pred cCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcccc
Confidence 458999 99995 47789999999999999999999997 7789999999999999999987654
No 74
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.58 E-value=1.2e-15 Score=116.21 Aligned_cols=64 Identities=30% Similarity=0.730 Sum_probs=59.7
Q ss_pred CCCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhhhcc
Q 046210 5 GTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFKE 68 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~ 68 (186)
++.++|.+|+++|..++.|.++|+.||++||+|..|+++|....|+.++|++||..||.++|++
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~ 176 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGP 176 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCC
Confidence 3466799999999888999999999999999999999999988999999999999999999977
No 75
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.57 E-value=1.6e-15 Score=97.36 Aligned_cols=60 Identities=28% Similarity=0.540 Sum_probs=54.6
Q ss_pred CCCCCC-Cceeecccc-eecccccccccceeccccccccCCCCceecCCccccHHHHhhhhc
Q 046210 103 KNMCFL-HKIVCPSEK-VAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFK 162 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~-v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~ 162 (186)
.++|.+ +++|...+. +.+.|+.||++||+|..|+++|....|+..||++||+.||.++||
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 458999 999987775 569999999999999999999988789999999999999999986
No 76
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.2e-15 Score=108.18 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=60.2
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccC--CCCceecCCccccHHHHhhhhcC--CCCCCc
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSIS--PSNYAALEGIWYCKHHFSKLFKE--KDSYNH 169 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~k~~~~--k~~~~~ 169 (186)
.++|.. +++|.+.+.|.++++.||++||+|..|+++|. +..|+.+||++||+.||.++|++ +|..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~ 76 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGG 76 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSS
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCC
Confidence 468999 99998777789999999999999999999996 46799999999999999999999 885554
No 77
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.57 E-value=1.8e-15 Score=114.29 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=59.9
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCCCCcc
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDSYNHL 170 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~~~~~ 170 (186)
.++|.. +++|.+.+.+.++|+.||++||+|..|+++|.+.. +.+||++||+.||.++|+++|..+..
T Consensus 60 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~ 127 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQL 127 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCCCTTTCC
T ss_pred CCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccccccccCCC
Confidence 469999 99998776788999999999999999999998776 47999999999999999999966654
No 78
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=107.38 Aligned_cols=60 Identities=17% Similarity=0.311 Sum_probs=55.2
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccC--CCCceecCCccccHHHHhhhhc
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSIS--PSNYAALEGIWYCKHHFSKLFK 162 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~k~~~ 162 (186)
.++|.+ +++|.+...|.++++.||++||+|..|+++|. +..|+.+||++||+.||.++||
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 569999 99998777799999999999999999999996 4689999999999999999986
No 79
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.54 E-value=3e-15 Score=106.25 Aligned_cols=69 Identities=22% Similarity=0.475 Sum_probs=59.9
Q ss_pred CCCCcccCCceeccCc-eEEeCCcccccccccccccccccc-CCCccccCCeeecCcchhhhhcccCCCCc
Q 046210 6 TQQKCKVCEKTVYPVE-QLSADGIVYHKSCFKCSHCKGTLK-LSNYSSMEGVLYFKPHFEQLFKESGNFNK 74 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~-~i~~~g~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~~~~~~~~~~ 74 (186)
..++|.+|+++|...+ ++.++++.||++||+|..|+++|. +..|+.+++++||..||.++|++++.+..
T Consensus 7 ~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~ 77 (123)
T 2l3k_A 7 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGG 77 (123)
T ss_dssp SSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCC
T ss_pred CCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCC
Confidence 3459999999997755 579999999999999999999995 44699999999999999999999886543
No 80
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.52 E-value=5.6e-15 Score=93.23 Aligned_cols=57 Identities=21% Similarity=0.521 Sum_probs=52.3
Q ss_pred CCCCC-Cceeec-ccceeccccccc--ccceeccccccccCCCCceecCCcccc-HHHHhhh
Q 046210 104 NMCFL-HKIVCP-SEKVAMESQAHH--KSCFKCSHGGYSISPSNYAALEGIWYC-KHHFSKL 160 (186)
Q Consensus 104 ~~C~~-~~~I~~-~~~v~~~g~~~H--~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~cy~k~ 160 (186)
++|.+ +++|.+ .+.|.++|+.|| ++||+|..|+++|.+..|+++||+||| ..||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 47999 999976 478899999999 999999999999998899999999999 9999775
No 81
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.49 E-value=1.8e-14 Score=103.01 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=59.2
Q ss_pred CCCCC-CceeecccceecccccccccceeccccccccC--CCCceecCCccccHHHHhhhhcC--CCCCCcc
Q 046210 104 NMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSIS--PSNYAALEGIWYCKHHFSKLFKE--KDSYNHL 170 (186)
Q Consensus 104 ~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~k~~~~--k~~~~~~ 170 (186)
+.|.. +++|.+.+.|.++|+.||++||+|..|+++|. +..|+.+||+|||+.||.++|++ +|.....
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~ 74 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDK 74 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCC
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCC
Confidence 48999 99998766789999999999999999999996 36799999999999999999999 7755443
No 82
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=1.1e-14 Score=95.77 Aligned_cols=62 Identities=21% Similarity=0.399 Sum_probs=54.0
Q ss_pred CCCCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCC-eeecCcchhhhhcc
Q 046210 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEG-VLYFKPHFEQLFKE 68 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g-~~yC~~cy~~~~~~ 68 (186)
.+++|.+|+++|. ++.|.++|+.||++||+|..|+++|..+.++..++ .+||..||.+++..
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (81)
T 1v6g_A 14 YGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVS 76 (81)
T ss_dssp CCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSC
T ss_pred hCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCC
Confidence 4579999999996 78899999999999999999999998777776655 57999999887754
No 83
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.47 E-value=3.3e-14 Score=106.08 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=59.5
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCCCCceecCCccccHHHHhhhhcCCCCCCcc
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKDSYNHL 170 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~~~~~~ 170 (186)
.+.|.. +++|.+.+.|.++|+.||++||+|..|+++|.+.. +.+||++||+.||.++|+++|..+..
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~ 73 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQL 73 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCC
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeeccccccccccccccccc
Confidence 458999 99998777788999999999999999999998775 58999999999999999999966644
No 84
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.42 E-value=6.8e-14 Score=106.15 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=59.7
Q ss_pred CCCCCC-CceeecccceecccccccccceeccccccccCC--CCceecCCccccHHHHhhhhcC--CCCCCcc
Q 046210 103 KNMCFL-HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISP--SNYAALEGIWYCKHHFSKLFKE--KDSYNHL 170 (186)
Q Consensus 103 ~~~C~~-~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~k~~~~--k~~~~~~ 170 (186)
.+.|.. +++|.+.+.|.++++.||++||+|..|+++|.. ..|+.+||++||+.||.++|++ +|..+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~ 77 (188)
T 1rut_X 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQ 77 (188)
T ss_dssp CCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCC
T ss_pred CCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCC
Confidence 458999 999987767899999999999999999999975 6899999999999999999999 5755443
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.58 E-value=1.2e-08 Score=54.37 Aligned_cols=29 Identities=38% Similarity=0.894 Sum_probs=27.5
Q ss_pred CCCcccCCceeccCceEEeCCcccccccc
Q 046210 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCF 35 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g~~~H~~CF 35 (186)
+++|++|++.|++.|.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 46899999999999999999999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.05 E-value=1.9e-06 Score=45.69 Aligned_cols=27 Identities=44% Similarity=0.687 Sum_probs=25.6
Q ss_pred CCCCC-Cceeecccceecccccccccce
Q 046210 104 NMCFL-HKIVCPSEKVAMESQAHHKSCF 130 (186)
Q Consensus 104 ~~C~~-~~~I~~~~~v~~~g~~~H~~CF 130 (186)
++|.+ ++.|+..|.+.+.|+.||+.||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 48999 9999999999999999999998
No 87
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=90.04 E-value=0.21 Score=29.51 Aligned_cols=29 Identities=21% Similarity=0.493 Sum_probs=24.9
Q ss_pred eccccccccCCCCceecCCcccc-HHHHhh
Q 046210 131 KCSHGGYSISPSNYAALEGIWYC-KHHFSK 159 (186)
Q Consensus 131 ~C~~C~~~L~~~~~~~~~g~~yC-~~cy~k 159 (186)
.|..|+..++...-+.+||+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 37899999988888999999999 888765
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=89.23 E-value=0.98 Score=30.29 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=29.6
Q ss_pred CCCCCCcccCCceeccCceEE--eCCccccccccccccccccccCCCccccCCeeecCcch
Q 046210 4 IGTQQKCKVCEKTVYPVEQLS--ADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHF 62 (186)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~i~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy 62 (186)
......|..|+..=...++|. .-++.||..|+.=.. . ....+..+|..|.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~-----~----~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV-----T----PLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC-----C----TTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc-----c----cccccCccCCcCC
Confidence 345678999988642223343 346889998865221 1 1235667787773
No 89
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.45 E-value=0.4 Score=30.09 Aligned_cols=33 Identities=18% Similarity=0.477 Sum_probs=23.5
Q ss_pred CCCCCCCcccCCceeccCceEEeCCcccccccc
Q 046210 3 FIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCF 35 (186)
Q Consensus 3 ~~~~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF 35 (186)
|......|+.|...|..+..-..-+..||..|+
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred ccCCCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 455667899999999765544445566787776
No 90
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=83.41 E-value=0.52 Score=26.21 Aligned_cols=18 Identities=6% Similarity=0.126 Sum_probs=15.1
Q ss_pred ceecCCccccHHHHhhhh
Q 046210 144 YAALEGIWYCKHHFSKLF 161 (186)
Q Consensus 144 ~~~~~g~~yC~~cy~k~~ 161 (186)
|...|-+|||.+||+++-
T Consensus 22 ~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCCTTTTTSCHHHHHHHH
T ss_pred EEEecCccchHHHHHHHh
Confidence 556899999999998763
No 91
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=78.26 E-value=0.78 Score=34.49 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=25.3
Q ss_pred eeccccccccCCCCceecCCccccHHHHhh
Q 046210 130 FKCSHGGYSISPSNYAALEGIWYCKHHFSK 159 (186)
Q Consensus 130 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~k 159 (186)
.+|..|+-......-...||+++|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 579999998866656678999999999975
No 92
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=74.32 E-value=5.9 Score=26.50 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=27.6
Q ss_pred CCCCcccCCceeccCceEEeC----CccccccccccccccccccCCCccccCCeeecCcc
Q 046210 6 TQQKCKVCEKTVYPVEQLSAD----GIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPH 61 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~----g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~c 61 (186)
....|..|+. .+++|.-. .+.||..|.. |.. ..+|..||..|
T Consensus 14 ~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c 59 (107)
T 4gne_A 14 HEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH 59 (107)
T ss_dssp SCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG
T ss_pred CCCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC
Confidence 3457888983 46666443 3679988764 322 34678899887
No 93
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=70.97 E-value=2.7 Score=28.30 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=53.0
Q ss_pred cccccccccccCC------CccccCCeeecCcchhhhhcccCCCCccCCCCchhhhhhhcccccCCCCcccCCCCCCCCC
Q 046210 35 FKCSHCKGTLKLS------NYSSMEGVLYFKPHFEQLFKESGNFNKNFQSPAKLIEKLTRQDRLAKLPACYLGPKNMCFL 108 (186)
Q Consensus 35 F~C~~C~~~L~~~------~~~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 108 (186)
+.|..|...+... .....=|..||..|..+.+.. ...|+.
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------------------------------~~~CP~ 53 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------------------------------ANTCPT 53 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----------------------------------CSBCTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----------------------------------CCCCCC
Confidence 6677777666442 133456788899998877643 225666
Q ss_pred -CceeecccceecccccccccceeccccccccCCC----C--ceecCCccccHHHHhhhhc
Q 046210 109 -HKIVCPSEKVAMESQAHHKSCFKCSHGGYSISPS----N--YAALEGIWYCKHHFSKLFK 162 (186)
Q Consensus 109 -~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~----~--~~~~~g~~yC~~cy~k~~~ 162 (186)
.+.+........ ..-.+=+.|..|...+... . ....=|..||..|..+.+.
T Consensus 54 Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 54 CRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 111 (133)
T ss_dssp TCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH
T ss_pred CCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH
Confidence 555532221111 1123346688888877431 1 2234688999999887653
No 94
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.01 E-value=2.7 Score=25.58 Aligned_cols=40 Identities=23% Similarity=0.478 Sum_probs=24.2
Q ss_pred CCCCcccCCceeccCceEE--eCCcccccccc--------cccccccccc
Q 046210 6 TQQKCKVCEKTVYPVEQLS--ADGIVYHKSCF--------KCSHCKGTLK 45 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~--~~g~~~H~~CF--------~C~~C~~~L~ 45 (186)
....|..|...+..++.+. .-+-.||..|+ .|-.|+..|.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4456888888775554432 24666777776 3556655554
No 95
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=69.76 E-value=1.6 Score=25.41 Aligned_cols=42 Identities=17% Similarity=0.540 Sum_probs=29.0
Q ss_pred CCCCcccCCceeccC----c--eEEeCCcccccccc--------ccccccccccCC
Q 046210 6 TQQKCKVCEKTVYPV----E--QLSADGIVYHKSCF--------KCSHCKGTLKLS 47 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~----~--~i~~~g~~~H~~CF--------~C~~C~~~L~~~ 47 (186)
....|..|...+... + .+..-|-.||..|+ +|-.|+..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456788998877432 1 34556777888887 588888777653
No 96
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.61 E-value=4.1 Score=24.46 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=28.4
Q ss_pred cccccccccceeccccccc-cCCCCceec--CCccccHHHHhhh
Q 046210 120 MESQAHHKSCFKCSHGGYS-ISPSNYAAL--EGIWYCKHHFSKL 160 (186)
Q Consensus 120 ~~g~~~H~~CF~C~~C~~~-L~~~~~~~~--~g~~yC~~cy~k~ 160 (186)
+....+|+ ..|..|+.. |.+..|.-. .+--+|..||.+-
T Consensus 4 ~~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 4 GSSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp CSSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CcCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 44567888 899999975 776655532 4567999999874
No 97
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=67.08 E-value=11 Score=25.53 Aligned_cols=30 Identities=10% Similarity=-0.018 Sum_probs=21.9
Q ss_pred eeccccccccCCCCceecCCccccHHHHhh
Q 046210 130 FKCSHGGYSISPSNYAALEGIWYCKHHFSK 159 (186)
Q Consensus 130 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~k 159 (186)
..|..|+.......--..+|+++|.+|...
T Consensus 60 ~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~ 89 (115)
T 4hc9_A 60 TSCANCQTTTTTLWRRNANGDPVCNACGLY 89 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHH
T ss_pred ccCCCcCCCCcceeEECCCCCCcchHHHHH
Confidence 468888887755544456889999999654
No 98
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=65.91 E-value=1.4 Score=33.07 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=25.8
Q ss_pred ccccccccccccCCCccccCCeeecCcchhh
Q 046210 34 CFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQ 64 (186)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 64 (186)
=.+|..|+.......-...+|+++|.+|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 3579999999887666677999999999865
No 99
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=64.32 E-value=3.7 Score=27.37 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=13.9
Q ss_pred CCCCCcccCCceeccCce
Q 046210 5 GTQQKCKVCEKTVYPVEQ 22 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~ 22 (186)
++-..|..|++.|.-+++
T Consensus 23 S~Ra~Ck~C~~kI~Kgel 40 (106)
T 2dmj_A 23 SGRASCKKCSESIPKDSL 40 (106)
T ss_dssp SSCCBCSSSCCBCCTTCE
T ss_pred CCCCcchhhCCccCCCCE
Confidence 345689999999976664
No 100
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=63.70 E-value=5.2 Score=22.37 Aligned_cols=39 Identities=21% Similarity=0.656 Sum_probs=22.9
Q ss_pred CCCCcccCCceeccCc-eE--EeCCcccccccc--------ccccccccc
Q 046210 6 TQQKCKVCEKTVYPVE-QL--SADGIVYHKSCF--------KCSHCKGTL 44 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~-~i--~~~g~~~H~~CF--------~C~~C~~~L 44 (186)
....|..|.+.+..++ .+ ..-|-.||..|+ +|-.|+..|
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 4567888888874432 22 224566777775 355555554
No 101
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.09 E-value=6 Score=23.75 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=24.7
Q ss_pred cccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 33 SCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
+-+.|..|...+........=|..||..|..+.+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH
Confidence 34778888888766333336788899999877663
No 102
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=62.77 E-value=9.1 Score=23.18 Aligned_cols=41 Identities=24% Similarity=0.575 Sum_probs=24.2
Q ss_pred CCCCcccCCceeccCceEE--eCCccccccccc--------cccccccccC
Q 046210 6 TQQKCKVCEKTVYPVEQLS--ADGIVYHKSCFK--------CSHCKGTLKL 46 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~--~~g~~~H~~CF~--------C~~C~~~L~~ 46 (186)
....|..|...+...+.+. .-+-.||..|+. |-.|+..|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 3457888888875444432 345667777763 5555555443
No 103
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=61.48 E-value=3.6 Score=27.88 Aligned_cols=18 Identities=17% Similarity=0.532 Sum_probs=14.0
Q ss_pred CCCCCcccCCceeccCce
Q 046210 5 GTQQKCKVCEKTVYPVEQ 22 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~ 22 (186)
++-..|..|++.|.-+++
T Consensus 18 S~RA~Ck~Ck~kI~KgeL 35 (114)
T 1v9x_A 18 SSRSSCKTCKSVINKENF 35 (114)
T ss_dssp CSCCBCSSSCCBCCSSSE
T ss_pred CCCCCchhhCCccCCCCE
Confidence 345689999999977764
No 104
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.32 E-value=3.8 Score=25.54 Aligned_cols=42 Identities=17% Similarity=0.511 Sum_probs=27.8
Q ss_pred CCCCCcccCCceecc-----------Cc-e--EEeCCcccccccc--------ccccccccccC
Q 046210 5 GTQQKCKVCEKTVYP-----------VE-Q--LSADGIVYHKSCF--------KCSHCKGTLKL 46 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~-----------~~-~--i~~~g~~~H~~CF--------~C~~C~~~L~~ 46 (186)
.....|+.|...+.. ++ . +..-+-.||..|+ +|-.|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 456779999888843 12 2 2236778998887 37778777643
No 105
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=58.06 E-value=4 Score=27.73 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=14.1
Q ss_pred CCCCCcccCCceeccCce
Q 046210 5 GTQQKCKVCEKTVYPVEQ 22 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~ 22 (186)
++-..|..|++.|.-+++
T Consensus 13 SgRA~Ck~C~~kI~KgeL 30 (117)
T 1uw0_A 13 RGTAGCKKCKEKIVKGVC 30 (117)
T ss_dssp SSCEECTTSSCEECTTCE
T ss_pred CCCccchhhCcccCCCCe
Confidence 345689999999977764
No 106
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=57.75 E-value=6.4 Score=22.03 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=19.8
Q ss_pred CCCCcccCCceeccCceEE-e--CCcccccccc
Q 046210 6 TQQKCKVCEKTVYPVEQLS-A--DGIVYHKSCF 35 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~-~--~g~~~H~~CF 35 (186)
....|..|.+.+..++.+. . -|-.||..|+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci 36 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECV 36 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHH
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHH
Confidence 4567999998886554322 2 4666777776
No 107
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=57.59 E-value=3.7 Score=24.41 Aligned_cols=43 Identities=16% Similarity=0.524 Sum_probs=28.7
Q ss_pred CCCCcccCCceeccC----c--eEEeCCcccccccc--------ccccccccccCCC
Q 046210 6 TQQKCKVCEKTVYPV----E--QLSADGIVYHKSCF--------KCSHCKGTLKLSN 48 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~----~--~i~~~g~~~H~~CF--------~C~~C~~~L~~~~ 48 (186)
....|..|.+.+... + .+..-|-.||..|+ +|-.|+..+....
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 456799998887432 2 33445677888887 6888887776543
No 108
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=56.05 E-value=3.2 Score=28.05 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=14.2
Q ss_pred CCCCCcccCCceeccCce
Q 046210 5 GTQQKCKVCEKTVYPVEQ 22 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~ 22 (186)
++-..|..|++.|.-+++
T Consensus 17 S~Ra~Ck~C~~kI~Kg~l 34 (111)
T 3odc_A 17 SNRSTCKGCMEKIEKGQV 34 (111)
T ss_dssp SSCCBCTTTCCBCCTTCE
T ss_pred cCCccccccCCCccCCce
Confidence 456789999999976664
No 109
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.05 E-value=4.4 Score=23.83 Aligned_cols=39 Identities=18% Similarity=0.600 Sum_probs=20.8
Q ss_pred CCCcccCCceeccC----c--eEEeCCcccccccc--------cccccccccc
Q 046210 7 QQKCKVCEKTVYPV----E--QLSADGIVYHKSCF--------KCSHCKGTLK 45 (186)
Q Consensus 7 ~~~C~~C~~~I~~~----~--~i~~~g~~~H~~CF--------~C~~C~~~L~ 45 (186)
...|..|...+... . ++..-|-.||..|+ +|-.|+..|.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 44677777766322 1 23334556666665 3555555543
No 110
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=54.70 E-value=5.1 Score=27.24 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=13.8
Q ss_pred CCCCCcccCCceeccCce
Q 046210 5 GTQQKCKVCEKTVYPVEQ 22 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~ 22 (186)
++-..|..|++.|..++.
T Consensus 36 S~RA~Ck~C~~kI~KgeL 53 (116)
T 3od8_A 36 SGRASCKKCSESIPKDSL 53 (116)
T ss_dssp SSCCBCTTTCCBCCTTSE
T ss_pred cCCccCcccCCccCCCCE
Confidence 445789999999976664
No 111
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=53.84 E-value=13 Score=24.70 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=34.5
Q ss_pred CCCcccCCceeccCceEEeCCccccccccccccccccccCC----C--ccccCCeeecCcchhhhhc
Q 046210 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLS----N--YSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~----~--~~~~~g~~yC~~cy~~~~~ 67 (186)
...|..|++.+...+.... ..-.+=+.|..|...+... . ....=|..||..|..+...
T Consensus 48 ~~~CP~Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 48 ANTCPTCRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 111 (133)
T ss_dssp CSBCTTTCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH
T ss_pred CCCCCCCCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH
Confidence 4578888888854444322 1223456678887776542 0 2234577888888776553
No 112
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=53.79 E-value=17 Score=21.17 Aligned_cols=31 Identities=6% Similarity=0.028 Sum_probs=14.7
Q ss_pred ccccccccccCCCccccCCeeecCcchhhhh
Q 046210 36 KCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66 (186)
Q Consensus 36 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 66 (186)
.|..|...+........=|..||..|..+.+
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~ 37 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWI 37 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHH
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHH
Confidence 3444544443322233345566666665543
No 113
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.91 E-value=10 Score=22.71 Aligned_cols=29 Identities=24% Similarity=0.677 Sum_probs=17.6
Q ss_pred CCCcccCCceeccCceEE--eCCcccccccc
Q 046210 7 QQKCKVCEKTVYPVEQLS--ADGIVYHKSCF 35 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~--~~g~~~H~~CF 35 (186)
...|..|...+...+.+. .-+-.||..|+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci 45 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCL 45 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHH
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHH
Confidence 456888888775444432 34556676665
No 114
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=51.47 E-value=9.1 Score=22.56 Aligned_cols=40 Identities=25% Similarity=0.647 Sum_probs=24.0
Q ss_pred CCCCcccCCceeccCceEE--eCCcccccccc--------cccccccccc
Q 046210 6 TQQKCKVCEKTVYPVEQLS--ADGIVYHKSCF--------KCSHCKGTLK 45 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~--~~g~~~H~~CF--------~C~~C~~~L~ 45 (186)
....|..|...+..++.+. .-|-.||..|+ +|-.|+..|.
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3457888988775444332 24566777775 3556655554
No 115
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=50.58 E-value=14 Score=22.23 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=26.6
Q ss_pred ccccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 32 KSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
++-|.|..|...+.. .....-|..||..|..+.+.
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHT
T ss_pred cccCCCCCccccccC-CEEcCCCCeecHHHHHHHHH
Confidence 345888999888765 44456899999999888763
No 116
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.23 E-value=5.8 Score=27.65 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=14.0
Q ss_pred CCCCCcccCCceeccCce
Q 046210 5 GTQQKCKVCEKTVYPVEQ 22 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~ 22 (186)
++-..|..|++.|.-+++
T Consensus 25 SgRA~CK~C~~kI~KgeL 42 (134)
T 2cs2_A 25 SNRSTCKGCMEKIEKGQV 42 (134)
T ss_dssp SSCCBCSSSCCBCCTTSE
T ss_pred CCCccchhcCCcccCCCe
Confidence 344689999999977764
No 117
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=49.80 E-value=8.5 Score=24.38 Aligned_cols=30 Identities=27% Similarity=0.673 Sum_probs=12.8
Q ss_pred CcccCCceeccCceEEeCCccccccccccc
Q 046210 9 KCKVCEKTVYPVEQLSADGIVYHKSCFKCS 38 (186)
Q Consensus 9 ~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~ 38 (186)
.|.-|.+.+.+...+.-....-|+-||-|+
T Consensus 17 ~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 17 CCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred EeecchhhhccCceeeCCCccCCeeecccc
Confidence 344444444333344444444444444443
No 118
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=49.66 E-value=15 Score=21.38 Aligned_cols=49 Identities=27% Similarity=0.458 Sum_probs=31.7
Q ss_pred CCCCcccCCceeccCceEE--eCCccccccccccccccccccCCCccccCCeeecCcchhhhh
Q 046210 6 TQQKCKVCEKTVYPVEQLS--ADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 66 (186)
....|..|++. +++|. .-++.||..|.. -+|.. ...+..||..|..+..
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~-----ppl~~----~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLD-----PPLKT----IPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSS-----SCCSS----CCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCC-----CCcCC----CCCCceEChhccChhh
Confidence 45679999873 55553 345788987743 23332 3357899999977654
No 119
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.30 E-value=18 Score=22.54 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=26.5
Q ss_pred CCCCCcccCCceeccCceEEeC------Ccccccccc----------cccccccccc
Q 046210 5 GTQQKCKVCEKTVYPVEQLSAD------GIVYHKSCF----------KCSHCKGTLK 45 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~~------g~~~H~~CF----------~C~~C~~~L~ 45 (186)
.....|..|......++.+... ...||..|+ +|..|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3456899999877545544322 267898887 4666666553
No 120
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.49 E-value=12 Score=21.90 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=24.3
Q ss_pred ccccccccccccCCCccccCCeeecCcchhhhh
Q 046210 34 CFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66 (186)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 66 (186)
=+.|..|...+.. .....=|..||..|..+.+
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 15 KYKCEKCHLVLCS-PKQTECGHRFCESCMAALL 46 (66)
T ss_dssp CEECTTTCCEESS-CCCCSSSCCCCHHHHHHHH
T ss_pred CCCCCCCChHhcC-eeECCCCCHHHHHHHHHHH
Confidence 4778888888765 3345678889999998876
No 121
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.13 E-value=16 Score=22.64 Aligned_cols=44 Identities=27% Similarity=0.449 Sum_probs=22.8
Q ss_pred CcccCCceeccCceEE--eCCccccccccccccccccccCCCccccCC-eeecCcc
Q 046210 9 KCKVCEKTVYPVEQLS--ADGIVYHKSCFKCSHCKGTLKLSNYSSMEG-VLYFKPH 61 (186)
Q Consensus 9 ~C~~C~~~I~~~~~i~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g-~~yC~~c 61 (186)
.|..|++.-..+++|. .-++.||..|+. -+|.. +.+| ..||..|
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~----~P~g~~W~C~~C 74 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLN-----PPLDK----VPEEEYWYCPSC 74 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSS-----SCCSS----CCCSSCCCCTTT
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccC-----CCccC----CCCCCCcCCcCc
Confidence 4666766543344443 234667777642 22322 2245 6777766
No 122
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=46.57 E-value=19 Score=23.33 Aligned_cols=34 Identities=6% Similarity=-0.028 Sum_probs=28.1
Q ss_pred ccccccccccccccCCCccccCCeeecCcchhhhh
Q 046210 32 KSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66 (186)
Q Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 66 (186)
++-|.|..|...+.+ ......|..||..|..+.+
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l 60 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHL 60 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHH
Confidence 678999999998876 5555699999999988776
No 123
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=46.52 E-value=9.8 Score=23.09 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=17.6
Q ss_pred ccccccccccCCCccccCCeeecCcchhhhh
Q 046210 36 KCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66 (186)
Q Consensus 36 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 66 (186)
.|.+|+.-- ......=+|.+||..||.+.-
T Consensus 10 WC~ICneDA-tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 10 WCCICNEDA-TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SCTTTCSCC-CEEETTTTSEEECSSHHHHHT
T ss_pred eeEEeCCCC-eEEecCCCCceehHHHHHHHc
Confidence 345555541 112233367899999997653
No 124
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.38 E-value=13 Score=22.00 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=13.8
Q ss_pred CCCcccCCceeccCceEEeCCcccccccc
Q 046210 7 QQKCKVCEKTVYPVEQLSADGIVYHKSCF 35 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g~~~H~~CF 35 (186)
...|..|...+. .-++..-|-.||..|+
T Consensus 15 ~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci 42 (71)
T 2d8t_A 15 VPECAICLQTCV-HPVSLPCKHVFCYLCV 42 (71)
T ss_dssp CCBCSSSSSBCS-SEEEETTTEEEEHHHH
T ss_pred CCCCccCCcccC-CCEEccCCCHHHHHHH
Confidence 345777776652 2222334445555553
No 125
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=46.36 E-value=9 Score=23.12 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=29.5
Q ss_pred CCCCcccCCceeccCceEE--eCCccccccccccccccccccCCCccccCCeeecCcchhh
Q 046210 6 TQQKCKVCEKTVYPVEQLS--ADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQ 64 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 64 (186)
....|..|++ .+++|. .-++.||..|.. -+|. ...++..||..|...
T Consensus 11 ~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~-----P~l~----~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGD---GTDVLRCTHCAAAFHWRCHF-----PAGT----SRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSC---CTTCEECSSSCCEECHHHHC-----TTTC----CCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCC---CCeEEECCCCCCceecccCC-----CccC----cCCCCCEECccccCC
Confidence 3457999986 355553 345789987742 2232 234678999999543
No 126
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=46.28 E-value=17 Score=21.33 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=29.5
Q ss_pred CCCCcccCCceeccCceE--EeCCccccccccccccccccccCCCccccCCeeecCcchhhh
Q 046210 6 TQQKCKVCEKTVYPVEQL--SADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQL 65 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i--~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 65 (186)
....|..|+. .+++| ..-.+.||..|.. -+|.. ..++..||..|..+.
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~-----ppl~~----~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKD---GGELLCCDTCPSSYHIHCLN-----PPLPE----IPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCC---CSSCBCCSSSCCCBCSSSSS-----SCCSS----CCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCC---CCCEEEcCCCCHHHcccccC-----CCcCc----CCCCccCChhhcCch
Confidence 4567999986 34444 2345778887743 22322 346789999996543
No 127
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.82 E-value=12 Score=22.84 Aligned_cols=32 Identities=13% Similarity=0.320 Sum_probs=22.2
Q ss_pred cccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 35 FKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
+.|..|...+.. .....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFR 47 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHH
Confidence 567778777755 33455677888888877663
No 128
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=45.55 E-value=17 Score=22.12 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=30.0
Q ss_pred CCCCcccCCceeccCceEEeCC-----ccccccccccccccccccCCCccccCCeeecCcchhh
Q 046210 6 TQQKCKVCEKTVYPVEQLSADG-----IVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQ 64 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 64 (186)
....| .|+++- .+++|.-.+ .-||..|.. |.. ...++.||..|..+
T Consensus 15 ~~~~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvg-------l~~----~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTT----KPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCS-CSSEECCSCSSCSCCCEETTTTT-------CSS----CCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCC-CCCEeEeeCCCCCCccEecccCC-------cCc----CCCCCEECCCCCcc
Confidence 34568 699875 477776554 468988865 322 12478899999654
No 129
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=45.40 E-value=11 Score=21.05 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=26.7
Q ss_pred CcccCCceeccCceEEe--CCccccccccccccccccccCCCccccCCeeecCcch
Q 046210 9 KCKVCEKTVYPVEQLSA--DGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHF 62 (186)
Q Consensus 9 ~C~~C~~~I~~~~~i~~--~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy 62 (186)
.|..|++.-..+++|.- -++.||..|.. -+|.. ..+|..||..|.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~-----p~l~~----~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLR-----PALYE----VPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHC-----TTCCS----CCSSCCSCTTTS
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCC-----CCcCC----CCCCcEECcCcc
Confidence 58888876433444433 34778887743 12322 335788898884
No 130
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=45.13 E-value=15 Score=20.25 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=18.5
Q ss_pred eccccccccCCCCceecCCccccHHHHhh
Q 046210 131 KCSHGGYSISPSNYAALEGIWYCKHHFSK 159 (186)
Q Consensus 131 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~k 159 (186)
.|..|+..-+...-...+|..+|.+|-..
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHH
Confidence 36666665443333345788999999754
No 131
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=45.05 E-value=13 Score=23.70 Aligned_cols=34 Identities=9% Similarity=0.224 Sum_probs=24.2
Q ss_pred ccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 34 CFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
=+.|..|...+........=|..||..|..+.+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH
Confidence 4678888888766323336788899999887763
No 132
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=44.95 E-value=26 Score=22.47 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=30.0
Q ss_pred CCCCCcccCCceeccCceEEe--CCccccccccccccccccccCCCccccCCeeecCcchh
Q 046210 5 GTQQKCKVCEKTVYPVEQLSA--DGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFE 63 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~--~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~ 63 (186)
.....|..|++. ++.|.- -.+.||..|.. -+|. ...+|..+|..|..
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~-----PpL~----~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHL-----PALQ----DVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSS-----TTCC----CCCSSSCCCCSCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCC-----CCCC----CCcCCCcCCccccC
Confidence 345689999973 555533 35778988742 2332 23467899999963
No 133
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=44.41 E-value=13 Score=21.74 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=26.7
Q ss_pred ccccccccccccCCCccc-cCCeeecCcchhhhhcc
Q 046210 34 CFKCSHCKGTLKLSNYSS-MEGVLYFKPHFEQLFKE 68 (186)
Q Consensus 34 CF~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~~ 68 (186)
-|.|..+...+.+ .... ..|..|+..+..+.+..
T Consensus 3 ~~~CpIs~~~m~d-PV~~~~sG~~yer~~I~~~l~~ 37 (61)
T 2bay_A 3 HMLCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVKD 37 (61)
T ss_dssp -CCCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHHH
T ss_pred eEEecCCCCCCCC-CEEeCCCCcEEcHHHHHHHHHh
Confidence 3789999888876 5555 79999999998887643
No 134
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=44.37 E-value=21 Score=20.95 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=29.9
Q ss_pred CCCCCcccCCceeccCceEEe--CCccccccccccccccccccCCCccccCCeeecCcchhh
Q 046210 5 GTQQKCKVCEKTVYPVEQLSA--DGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQ 64 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~--~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 64 (186)
.....|..|++ .+++|.- -.+.||..|.. -+|. ...++..||..|..+
T Consensus 9 ~~~~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~-----p~l~----~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQ---GGEIILCDTCPRAYHMVCLD-----PDME----KAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSC---CSSEEECSSSSCEEEHHHHC-----TTCC----SCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCC---CCcEEECCCCChhhhhhccC-----CCCC----CCCCCceECcccccc
Confidence 44568999987 3555533 34678877743 1222 134678999999653
No 135
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=44.07 E-value=18 Score=22.53 Aligned_cols=35 Identities=6% Similarity=-0.056 Sum_probs=27.8
Q ss_pred ccccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 32 KSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
++-|.|..|...+.. ......|..||..|..+.+.
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLL 46 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHh
Confidence 456999999998876 55556899999999877763
No 136
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=43.69 E-value=11 Score=22.93 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=29.9
Q ss_pred CCcccCCceeccCceEEe--CCccccccccccccccccccCCCccccCCeeecCcchhhhh
Q 046210 8 QKCKVCEKTVYPVEQLSA--DGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66 (186)
Q Consensus 8 ~~C~~C~~~I~~~~~i~~--~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 66 (186)
..|..|+++-....+|.- -+.-||..|..= ++. ...++..||..|..++.
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~-----~~~----~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVGI-----MAA----PPEEMQWFCPKCANKIK 70 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSSEEEHHHHTC-----SSC----CCSSSCCCCTTTHHHHC
T ss_pred cCCCCCCCCCCCCCEEEcCCCCcccccccCCC-----Ccc----CCCCCCEEChhccCchh
Confidence 469999988632235533 245678776431 111 12246899999987654
No 137
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.79 E-value=12 Score=22.13 Aligned_cols=38 Identities=13% Similarity=0.483 Sum_probs=22.4
Q ss_pred CCCCcccCCceeccCceEEeCCcccccccc--------cccccccccc
Q 046210 6 TQQKCKVCEKTVYPVEQLSADGIVYHKSCF--------KCSHCKGTLK 45 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g~~~H~~CF--------~C~~C~~~L~ 45 (186)
....|..|...+.. ++..-|-.||..|+ +|-.|+..+.
T Consensus 14 ~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 14 DEEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 34568888777633 44445666666664 2555555554
No 138
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=41.70 E-value=23 Score=21.17 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=24.9
Q ss_pred cccccccccccccCCCcccc-CCeeecCcchhhhhc
Q 046210 33 SCFKCSHCKGTLKLSNYSSM-EGVLYFKPHFEQLFK 67 (186)
Q Consensus 33 ~CF~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~~~ 67 (186)
+=+.|..|...+.. ..... =|..||..|..+.+.
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 14 DELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GGGSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHH
T ss_pred CCCCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHH
Confidence 34778888888765 44444 488999999988764
No 139
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=41.36 E-value=9.6 Score=25.02 Aligned_cols=39 Identities=15% Similarity=0.328 Sum_probs=24.6
Q ss_pred CCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhh
Q 046210 8 QKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQL 65 (186)
Q Consensus 8 ~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 65 (186)
..|+.|..++.. .|..| .|..|++.+. -..+|.+|.+.+
T Consensus 33 ~~CP~Cq~eL~~------~g~~~-----hC~~C~~~f~--------~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQ------DNGHA-----RCRSCGEFIE--------MKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEE------ETTEE-----EETTTCCEEE--------EEEECTTTCSBC
T ss_pred ccCccCCCccee------cCCEE-----ECccccchhh--------ccccCcchhhHH
Confidence 578888887721 23333 3777776543 367888887655
No 140
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=40.96 E-value=13 Score=21.80 Aligned_cols=45 Identities=18% Similarity=0.395 Sum_probs=28.8
Q ss_pred CCCCcccCCceeccCceEEeCC-----ccccccccccccccccccCCCccccCCeeecCcchh
Q 046210 6 TQQKCKVCEKTVYPVEQLSADG-----IVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFE 63 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~~g-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~ 63 (186)
....| .|+++- .+++|.-.+ .-||..|.. |.. ...++.||..|..
T Consensus 8 e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg-------l~~----~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD-------LTT----KPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSS----CCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC-------ccc----CCCCCEECcCccC
Confidence 34456 799875 577776555 468988865 222 1236788988754
No 141
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=40.89 E-value=14 Score=21.62 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=28.4
Q ss_pred CCCcccCCceeccCceEEeCC-----ccccccccccccccccccCCCccccCCeeecCcchh
Q 046210 7 QQKCKVCEKTVYPVEQLSADG-----IVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFE 63 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~ 63 (186)
...| .|+++- .+++|.-.+ .-||..|.. |.. ...|+.||..|..
T Consensus 10 ~~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg-------l~~----~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTT----KPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSS----CCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC-------CCc----CCCCCEECcCccC
Confidence 4456 798875 577776555 468988865 322 1247788988854
No 142
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=40.86 E-value=18 Score=21.52 Aligned_cols=49 Identities=16% Similarity=0.355 Sum_probs=31.8
Q ss_pred CCCCcccCCceeccCceEEe--CCccccccccccccccccccCCCccccCCeeecCcchhhhh
Q 046210 6 TQQKCKVCEKTVYPVEQLSA--DGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~--~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 66 (186)
....|..|+.. +++|.- -.+.||..|.. -+|.. ..++..||..|.....
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~-----ppl~~----~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLS-----PPLRE----IPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSS-----SCCSS----CCSSCCCCHHHHHTCC
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccC-----CCcCc----CCCCCeECccccCccc
Confidence 45689999863 555533 35789988754 23332 3457899999976543
No 143
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.64 E-value=16 Score=22.05 Aligned_cols=25 Identities=20% Similarity=0.594 Sum_probs=11.7
Q ss_pred cccccccccCCCccccCCeeecCcc
Q 046210 37 CSHCKGTLKLSNYSSMEGVLYFKPH 61 (186)
Q Consensus 37 C~~C~~~L~~~~~~~~~g~~yC~~c 61 (186)
|..|++.++...|.=+=|..||..|
T Consensus 18 C~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wfh_A 18 CTVCRKRVGLTGFMCRCGTTFCGSH 42 (64)
T ss_dssp CTTTCCCCCTTCEECSSSCEECTTT
T ss_pred ChhhCCccCccCEEeecCCEecccc
Confidence 3445554444334334445555544
No 144
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=40.64 E-value=25 Score=22.62 Aligned_cols=34 Identities=6% Similarity=-0.170 Sum_probs=27.6
Q ss_pred ccccccccccccccCCCccccCC-eeecCcchhhhh
Q 046210 32 KSCFKCSHCKGTLKLSNYSSMEG-VLYFKPHFEQLF 66 (186)
Q Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g-~~yC~~cy~~~~ 66 (186)
++=|.|..|...+.+ ......| ..||..|..+.+
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l 54 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHL 54 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHH
Confidence 567999999998876 5556677 999999988776
No 145
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.09 E-value=17 Score=21.92 Aligned_cols=10 Identities=40% Similarity=0.989 Sum_probs=4.9
Q ss_pred CCcccCCcee
Q 046210 8 QKCKVCEKTV 17 (186)
Q Consensus 8 ~~C~~C~~~I 17 (186)
.+|..|++.+
T Consensus 16 ~rC~~C~kkv 25 (64)
T 1wg2_A 16 NRCFSCNKKV 25 (64)
T ss_dssp CSCTTTCCCC
T ss_pred CcChhhCCcc
Confidence 3455555544
No 146
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=39.76 E-value=29 Score=20.95 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=26.2
Q ss_pred CcccCCceeccCceEEe--CCccccccccccccccccccCCCccccCC-eeecCcch
Q 046210 9 KCKVCEKTVYPVEQLSA--DGIVYHKSCFKCSHCKGTLKLSNYSSMEG-VLYFKPHF 62 (186)
Q Consensus 9 ~C~~C~~~I~~~~~i~~--~g~~~H~~CF~C~~C~~~L~~~~~~~~~g-~~yC~~cy 62 (186)
.|..|++.-..+++|.- -++.||..|+. -+|.. ...| ..||..|.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~----~P~g~~W~C~~C~ 67 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLD-----PPLSS----VPSEDEWYCPECR 67 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSS-----SCCSS----CCSSSCCCCTTTS
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCC-----CCcCC----CCCCCCcCCcCcc
Confidence 46677776534455533 34788888753 23432 2245 78888774
No 147
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=39.54 E-value=21 Score=22.90 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=24.3
Q ss_pred ccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 34 CFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
=+.|..|...+........=|..||..|..+.+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHH
Confidence 3678888888765322256688899999887764
No 148
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=39.41 E-value=22 Score=25.63 Aligned_cols=48 Identities=25% Similarity=0.292 Sum_probs=30.1
Q ss_pred CCCCcccCCceeccCceEEe--CCccccccccccccccccccCCCccccCCeeecCcchhhh
Q 046210 6 TQQKCKVCEKTVYPVEQLSA--DGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQL 65 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~~--~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 65 (186)
....|..|+.. ++.|.- -.+.||..|.. -+|. ...+|..+|..|....
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~-----p~l~----~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHV-----PTLT----NFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSS-----SCCS----SCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccC-----CCCC----CCCCCCEECccccCcc
Confidence 45679999853 565533 45789988732 2222 2346788999986543
No 149
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=39.29 E-value=14 Score=23.26 Aligned_cols=30 Identities=17% Similarity=0.384 Sum_probs=18.0
Q ss_pred CCCCcccCCceeccCceEE--eCCcccccccc
Q 046210 6 TQQKCKVCEKTVYPVEQLS--ADGIVYHKSCF 35 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~~~i~--~~g~~~H~~CF 35 (186)
....|..|...+..++.+. .-|-.||..|+
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci 70 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCV 70 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHH
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHH
Confidence 3456888887775555432 24556676665
No 150
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=39.14 E-value=17 Score=24.21 Aligned_cols=12 Identities=25% Similarity=0.695 Sum_probs=6.2
Q ss_pred cccccccccccc
Q 046210 32 KSCFKCSHCKGT 43 (186)
Q Consensus 32 ~~CF~C~~C~~~ 43 (186)
++|-.|..|+..
T Consensus 56 ~~C~~C~~C~~~ 67 (114)
T 2kwj_A 56 IECKSCILCGTS 67 (114)
T ss_dssp GGGCCCTTTTCC
T ss_pred cccCccCccccc
Confidence 445455555553
No 151
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=38.81 E-value=17 Score=23.98 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=20.0
Q ss_pred cccccccccCCCccccCCeeecCcchhhh
Q 046210 37 CSHCKGTLKLSNYSSMEGVLYFKPHFEQL 65 (186)
Q Consensus 37 C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 65 (186)
|..|+.|+....-...=+.++|.+|+...
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~ 32 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILH 32 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHH
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHH
Confidence 67787777654444455668999998764
No 152
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=37.84 E-value=7.9 Score=28.61 Aligned_cols=26 Identities=8% Similarity=0.023 Sum_probs=19.7
Q ss_pred cceeccccccccCCCCceecCCccccHHHHhh
Q 046210 128 SCFKCSHGGYSISPSNYAALEGIWYCKHHFSK 159 (186)
Q Consensus 128 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~k 159 (186)
.=.+|..|+-..... |+++|..|+.+
T Consensus 162 ~~~~C~~CGE~~~~~------g~~~C~~C~~~ 187 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ------DGELCLSCQGG 187 (191)
T ss_dssp CEEECTTTCCEEEGG------GCSSCHHHHTT
T ss_pred CCEECCcCCCChhhC------CCcCCccccCC
Confidence 336799999876332 89999999865
No 153
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.56 E-value=19 Score=22.91 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=26.4
Q ss_pred ceeccccccccCCCCcee-cCCccccHHHHhhhhcC
Q 046210 129 CFKCSHGGYSISPSNYAA-LEGIWYCKHHFSKLFKE 163 (186)
Q Consensus 129 CF~C~~C~~~L~~~~~~~-~~g~~yC~~cy~k~~~~ 163 (186)
=|.|..|...+.. .... ..|..||+.|-.+.+..
T Consensus 7 ~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~~ 41 (94)
T 2yu4_A 7 GFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIES 41 (94)
T ss_dssp CCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHHH
T ss_pred EeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHHH
Confidence 4889999988854 4666 58999999998887643
No 154
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=37.48 E-value=19 Score=23.35 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=24.4
Q ss_pred ccccccccccccCCCccc-cCCeeecCcchhhhhc
Q 046210 34 CFKCSHCKGTLKLSNYSS-MEGVLYFKPHFEQLFK 67 (186)
Q Consensus 34 CF~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~ 67 (186)
-+.|..|...+.. .... .=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHT
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHH
Confidence 4678888887765 3443 6788999999887764
No 155
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=37.07 E-value=17 Score=22.14 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=32.3
Q ss_pred CCCCCcccCCcee--ccCceEE--eCCccccccccccccccccccCCCccccCCeeecCcchhhhh
Q 046210 5 GTQQKCKVCEKTV--YPVEQLS--ADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66 (186)
Q Consensus 5 ~~~~~C~~C~~~I--~~~~~i~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 66 (186)
.....|..|++.= ..+++|. .-++.||..|..=. .+.+|..||..|..+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~-----------~vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-----------YIPEGQWLCRHCLQSRA 68 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS-----------SCCSSCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC-----------cCCCCCcCCccCcCcCc
Confidence 4466899998753 2234443 33467888775421 13468899999977654
No 156
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=36.54 E-value=21 Score=24.42 Aligned_cols=31 Identities=6% Similarity=0.117 Sum_probs=22.0
Q ss_pred cccccccccccCCCccccCCeeecCcchhhhh
Q 046210 35 FKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66 (186)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 66 (186)
+.|..|...+.. .....=|..||..|..+.+
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWM 84 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHT
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHH
Confidence 568888777755 3444577888988887654
No 157
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=35.45 E-value=18 Score=22.90 Aligned_cols=39 Identities=21% Similarity=0.435 Sum_probs=25.1
Q ss_pred CCcccCCceeccCceEEeCCccccccccccccccccccCCCccccCCeeecCcchhhh
Q 046210 8 QKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQL 65 (186)
Q Consensus 8 ~~C~~C~~~I~~~~~i~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 65 (186)
..|+.|..+|.. .++. +.|..|++.+.. ..||.+|-..+
T Consensus 3 ~~CP~C~~~l~~------~~~~-----~~C~~C~~~~~~--------~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALER------NGDT-----AHCETCAKDFSL--------QALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEE------CSSE-----EECTTTCCEEEE--------EEECSSSCSCC
T ss_pred CCCCCCCCcccc------CCCc-----eECccccccCCC--------cccCcchhhHH
Confidence 579999998832 2332 347888876654 34677776544
No 158
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=35.20 E-value=18 Score=21.35 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=28.8
Q ss_pred CCCcccCCceeccCceEEeCC-----ccccccccccccccccccCCCccccCCeeecCcchh
Q 046210 7 QQKCKVCEKTVYPVEQLSADG-----IVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFE 63 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~ 63 (186)
...| .|+++- .+++|.-.+ .-||..|.. |.. ...++.||..|..
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg-------l~~----~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS-------LTY----KPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSS----CCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC-------cCc----CCCCCEECcCccc
Confidence 4456 799875 577776555 568988865 222 1247888988854
No 159
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=35.12 E-value=22 Score=22.03 Aligned_cols=26 Identities=15% Similarity=0.537 Sum_probs=14.2
Q ss_pred ccccccccccCCCccccCCeeecCcc
Q 046210 36 KCSHCKGTLKLSNYSSMEGVLYFKPH 61 (186)
Q Consensus 36 ~C~~C~~~L~~~~~~~~~g~~yC~~c 61 (186)
+|..|++.+.-..|.-+=|..||..|
T Consensus 27 RC~~C~kkvgL~~f~CrCg~~FCs~H 52 (74)
T 1wfp_A 27 RCLSCNKKVGVTGFKCRCGSTFCGTH 52 (74)
T ss_dssp BCSSSCCBCTTTCEECTTSCEECTTT
T ss_pred cchhhcCcccccceEeccCCEecccc
Confidence 34456665555445445555666555
No 160
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.77 E-value=37 Score=21.70 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=32.7
Q ss_pred CCCcccCCceeccCceEEe--CCccccccccccccccccccCCCccccCCeeecCcchhhhh
Q 046210 7 QQKCKVCEKTVYPVEQLSA--DGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~--~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 66 (186)
...|..|++.-....+|.- -++.||..|.. -+|. .+.++..||..|.....
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~-----Ppl~----~~P~g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLL-----PPLP----EIPRGIWRCPKCILAEC 68 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTTTCCEECSSSSS-----SCCS----SCCSSCCCCHHHHHHHH
T ss_pred CCCCccCCCcCCCCCEEEcCCCCchhccccCC-----CCcc----cCCCCCcCCccCcCccc
Confidence 3479999986533345433 45789988753 2343 23467899999977643
No 161
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=34.63 E-value=22 Score=19.84 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=17.0
Q ss_pred eccccccccCCCCceecCCccccHHHHh
Q 046210 131 KCSHGGYSISPSNYAALEGIWYCKHHFS 158 (186)
Q Consensus 131 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~ 158 (186)
.|..|+..-....-...+|..+|.+|-.
T Consensus 6 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl 33 (46)
T 1gnf_A 6 ECVNCGATATPLWRRDRTGHYLCNACGL 33 (46)
T ss_dssp CCTTTCCCCCSSCBCCTTCCCBCSHHHH
T ss_pred CCCCcCCCCCCcCccCCCCCccchHHHH
Confidence 3666666543332233578889999965
No 162
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=34.32 E-value=26 Score=21.14 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=19.2
Q ss_pred eccccccccCCCCceecCCccccHHHHhh
Q 046210 131 KCSHGGYSISPSNYAALEGIWYCKHHFSK 159 (186)
Q Consensus 131 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~k 159 (186)
.|..|+..-+...--..+|..+|.+|...
T Consensus 11 ~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~ 39 (66)
T 4gat_A 11 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 39 (66)
T ss_dssp CCTTTCCCCCSSCEEETTTEEECHHHHHH
T ss_pred CCCCCCCCCCCcCCcCCCCCCccHHHHHH
Confidence 46667765544433446888999999654
No 163
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=34.05 E-value=25 Score=21.06 Aligned_cols=29 Identities=10% Similarity=0.006 Sum_probs=17.3
Q ss_pred eccccccccCCCCceecCCccccHHHHhh
Q 046210 131 KCSHGGYSISPSNYAALEGIWYCKHHFSK 159 (186)
Q Consensus 131 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~k 159 (186)
.|..|+..-....--..+|..+|.+|-..
T Consensus 9 ~C~~C~tt~Tp~WR~gp~G~~LCNACGl~ 37 (63)
T 3dfx_A 9 SCANCQTTTTTLWRRNANGDPVCNACGLY 37 (63)
T ss_dssp CCTTTCCSCCSSCCCCTTSCCCCHHHHHH
T ss_pred cCCCcCCCCCCccCCCCCCCchhhHHHHH
Confidence 35556655433322335788999999644
No 164
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=34.04 E-value=17 Score=21.77 Aligned_cols=30 Identities=17% Similarity=0.485 Sum_probs=19.0
Q ss_pred CCCCCcccCCceeccCc-eEEeC---Cccccccc
Q 046210 5 GTQQKCKVCEKTVYPVE-QLSAD---GIVYHKSC 34 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~-~i~~~---g~~~H~~C 34 (186)
.....|..|++++...+ +|.-. .+-||..|
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhc
Confidence 34557999999985543 45555 45678766
No 165
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.60 E-value=28 Score=19.84 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=24.4
Q ss_pred eeccccccccCCCCceecCCccccHHHHhhhhc
Q 046210 130 FKCSHGGYSISPSNYAALEGIWYCKHHFSKLFK 162 (186)
Q Consensus 130 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~ 162 (186)
+.|.+|...+.. .....=|..||..|..+.+.
T Consensus 21 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 21 VICPICLDILQK-PVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CBCTTTCSBCSS-CEECTTSSEECHHHHHHHHH
T ss_pred CCCCcCCchhCC-eEEeCCCCcchHHHHHHHHH
Confidence 678888887754 34446789999999988775
No 166
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=33.56 E-value=22 Score=22.09 Aligned_cols=25 Identities=24% Similarity=0.580 Sum_probs=13.3
Q ss_pred cccccccccCCCccccCCeeecCcc
Q 046210 37 CSHCKGTLKLSNYSSMEGVLYFKPH 61 (186)
Q Consensus 37 C~~C~~~L~~~~~~~~~g~~yC~~c 61 (186)
|..|++.++...|.-+=|..||..|
T Consensus 28 C~~CrKkvgL~gf~CrCg~~FCs~H 52 (74)
T 1wfl_A 28 CFMCRKKVGLTGFDCRCGNLFCGLH 52 (74)
T ss_dssp CSSSCCBCGGGCEECTTSCEECSSS
T ss_pred ChhhCCcccccCeecCCCCEechhc
Confidence 3446665554445444556666555
No 167
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=33.53 E-value=29 Score=22.64 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=26.7
Q ss_pred cccccceecccccc-ccCCCCcee--cCCccccHHHHhhhh
Q 046210 124 AHHKSCFKCSHGGY-SISPSNYAA--LEGIWYCKHHFSKLF 161 (186)
Q Consensus 124 ~~H~~CF~C~~C~~-~L~~~~~~~--~~g~~yC~~cy~k~~ 161 (186)
.+|+. +.|..|+. +|.+..|.- =.+--+|..||....
T Consensus 27 ~~H~g-v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~ 66 (98)
T 2dip_A 27 DKHLG-IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC 66 (98)
T ss_dssp SSCCC-CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS
T ss_pred cccCC-CCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC
Confidence 46776 78999996 576665553 245678999998754
No 168
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.12 E-value=14 Score=23.54 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=32.7
Q ss_pred CCcccCCceecc--CceEE--eCCccccccccccccccccccCCCccccCCeeecCcchhhh
Q 046210 8 QKCKVCEKTVYP--VEQLS--ADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQL 65 (186)
Q Consensus 8 ~~C~~C~~~I~~--~~~i~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 65 (186)
..|..|+..-.. +.+|. .-++.||..|.. -+|......+.+|..||..|....
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHK-----PQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS-----SCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCC-----CcccccccCCCCCCeeCccccchh
Confidence 479999986422 33443 345789988832 233321123467899999997655
No 169
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.54 E-value=24 Score=22.72 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=28.4
Q ss_pred CCCcccCCceeccCceEEeCC-----ccccccccccccccccccCCCccccCCeeecCcchhh
Q 046210 7 QQKCKVCEKTVYPVEQLSADG-----IVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQ 64 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~~~g-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 64 (186)
...| .|+++- .+++|.-.+ .-||..|.. |.. ...++.||..|..+
T Consensus 36 ~~yC-iC~~~~-~g~MI~CD~~dC~~~WfH~~CVg-------l~~----~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 36 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTT----KPRGKWFCPRCSQE 85 (91)
T ss_dssp CBCS-TTCCBC-CSCCCCCSCSSCSCCCCCSTTTT-------CSS----CCCSSCCCTTTCCC
T ss_pred CcEE-ECCCCC-CCCEeEecCCCCCCCCEecccCC-------cCc----CCCCCEECcCccCc
Confidence 3457 898876 466665544 457887764 222 12477899998654
No 170
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=31.95 E-value=30 Score=20.34 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=32.8
Q ss_pred CCCCCCcccCCceec--cCceEE--eCCccccccccccccccccccCCCccccCCeeecCcchhhh
Q 046210 4 IGTQQKCKVCEKTVY--PVEQLS--ADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQL 65 (186)
Q Consensus 4 ~~~~~~C~~C~~~I~--~~~~i~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 65 (186)
.+....|..|+..-. .+++|. .-++.||..|.. -+|.. .....++..||..|-...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~-----p~l~~-~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHT-----PHIDS-SVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSS-----SCCCH-HHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCC-----Ccccc-cccCCCCCEECCCCcCcc
Confidence 345678999998632 244443 345789987743 12221 001246789999986543
No 171
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=31.41 E-value=23 Score=24.96 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=26.5
Q ss_pred cccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 33 SCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
+=|.|..|...|.. .....-|..||..|..+.+.
T Consensus 17 ~~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 17 SKYECPICLMALRE-AVQTPCGHRFCKACIIKSIR 50 (170)
T ss_dssp GGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCChhhcC-cEECCCCCHHHHHHHHHHHH
Confidence 34789999988876 45567889999999988764
No 172
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.38 E-value=42 Score=21.99 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=23.4
Q ss_pred ccccccccccccCCCccc-cCCeeecCcchhhhhc
Q 046210 34 CFKCSHCKGTLKLSNYSS-MEGVLYFKPHFEQLFK 67 (186)
Q Consensus 34 CF~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~ 67 (186)
=+.|..|...+.. .... .=|..||..|..+.+.
T Consensus 22 ~~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 22 LLRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TTSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhc
Confidence 4778888777765 3444 6788888888877653
No 173
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=31.36 E-value=10 Score=28.82 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=0.0
Q ss_pred CCCCCcccCCceeccCce
Q 046210 5 GTQQKCKVCEKTVYPVEQ 22 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~ 22 (186)
++-..|..|++.|.-++.
T Consensus 141 S~Ra~Ck~C~~kI~KgeL 158 (223)
T 4av1_A 141 SNRSTCKGCMEKIEKGQV 158 (223)
T ss_dssp ------------------
T ss_pred cCCccccccCCccCCCCe
Confidence 345689999999976664
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=31.32 E-value=41 Score=25.33 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=29.0
Q ss_pred cccccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 31 HKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 31 H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
-+.-|.|..|...+.. ......|..||..|..+.+.
T Consensus 205 ~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~ 240 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 240 (281)
T ss_dssp CCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHH
T ss_pred CCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHH
Confidence 3567999999998876 55566899999999887663
No 175
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=31.19 E-value=25 Score=23.22 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=25.0
Q ss_pred ccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 34 CFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
=|.|..|...+.. .....=|..||..|..+.+.
T Consensus 18 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 18 KYECPICLMALRE-AVQTPCGHRFCKACIIKSIR 50 (118)
T ss_dssp GGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCcCChhhcC-eEECCcCChhhHHHHHHHHh
Confidence 3788999888865 34456788999999987653
No 176
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=31.01 E-value=69 Score=20.34 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=13.3
Q ss_pred ccccccccCC-CCceecCCccccHHH
Q 046210 132 CSHGGYSISP-SNYAALEGIWYCKHH 156 (186)
Q Consensus 132 C~~C~~~L~~-~~~~~~~g~~yC~~c 156 (186)
|..|++.+.- ..|.-+=|..||..|
T Consensus 28 C~~C~kkvgl~~~f~CrCg~~FC~~H 53 (85)
T 1wff_A 28 CFLCGKKTGLATSFECRCGNNFCASH 53 (85)
T ss_dssp CSSSCCBCSSSSCEECTTCCEECTTT
T ss_pred chhhCCeecccCCeEcCCCCEecccC
Confidence 4445555543 244445566666655
No 177
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=29.13 E-value=32 Score=20.37 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=16.7
Q ss_pred cccccccccccCCCccc-c--CCeeecC
Q 046210 35 FKCSHCKGTLKLSNYSS-M--EGVLYFK 59 (186)
Q Consensus 35 F~C~~C~~~L~~~~~~~-~--~g~~yC~ 59 (186)
..|+.|+++|..+.+.. + .-++||.
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFCS 48 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFCS 48 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEESS
T ss_pred cChhhccchhhcCceeeeecCchhheec
Confidence 56788888887765532 2 4467775
No 178
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=29.13 E-value=18 Score=19.86 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=9.1
Q ss_pred CCcccCCceecc
Q 046210 8 QKCKVCEKTVYP 19 (186)
Q Consensus 8 ~~C~~C~~~I~~ 19 (186)
..|.+||+||..
T Consensus 18 RvC~~CgkPi~l 29 (44)
T 2lo3_A 18 RVCEKCGKPLAL 29 (44)
T ss_dssp EECTTTCCEEET
T ss_pred hhhcccCCcchH
Confidence 368899999843
No 179
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.03 E-value=34 Score=19.49 Aligned_cols=46 Identities=28% Similarity=0.462 Sum_probs=28.1
Q ss_pred CCCCCcccCCceeccCceEE--eCCccccccccccccccccccCCCccccCCeeecCcch
Q 046210 5 GTQQKCKVCEKTVYPVEQLS--ADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHF 62 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy 62 (186)
+....|..|++. +++|. .-.+.||..|.. -+|.. ...+..||..|.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~-----ppl~~----~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLD-----PPLKT----IPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSS-----SCCCS----CCCSSCCCHHHH
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCC-----CCcCC----CCCCceEChhhh
Confidence 445679999873 55543 345778987754 22322 235677887774
No 180
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=28.90 E-value=50 Score=24.27 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=30.3
Q ss_pred CCCCCcccCCceeccCceEEe--CCccccccccccccccccccCCCccccCCeeecCcchhh
Q 046210 5 GTQQKCKVCEKTVYPVEQLSA--DGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQ 64 (186)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~i~~--~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 64 (186)
.....|..|+.. ++.|.- -.+.||..|.. -+|. ....|..+|..|...
T Consensus 5 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~-----p~l~----~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHV-----PTLL----SFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC---EEEEECSSSSCEECTTTSS-----SCCS----SCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC---CceEEcCCCCCccCCccCC-----CCCC----CCCCCCEEeCceeCc
Confidence 345679999853 455433 45789988742 2232 244678899999654
No 181
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=28.77 E-value=54 Score=20.23 Aligned_cols=26 Identities=27% Similarity=0.645 Sum_probs=13.3
Q ss_pred cccCCceeccCceEE--eCCcccccccc
Q 046210 10 CKVCEKTVYPVEQLS--ADGIVYHKSCF 35 (186)
Q Consensus 10 C~~C~~~I~~~~~i~--~~g~~~H~~CF 35 (186)
|..|++.-..+++|. .-++.||..|+
T Consensus 29 C~vC~~~~d~~~ll~CD~C~~~yH~~Cl 56 (77)
T 3shb_A 29 CHLCGGRQDPDKQLMCDECDMAFHIYCL 56 (77)
T ss_dssp BTTTCCCSCGGGEEECTTTCCEEETTTS
T ss_pred CCccCCCCCCcceeEeCCCCCccCcccC
Confidence 555665543333442 23466776663
No 182
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.91 E-value=29 Score=20.96 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=16.1
Q ss_pred cccccccccccCCCccccCCeeecCcc
Q 046210 35 FKCSHCKGTLKLSNYSSMEGVLYFKPH 61 (186)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c 61 (186)
+.|-.|+.+|. +...+|.++|..|
T Consensus 11 L~CP~ck~~L~---~~~~~g~LvC~~c 34 (67)
T 2jny_A 11 LACPKDKGPLR---YLESEQLLVNERL 34 (67)
T ss_dssp CBCTTTCCBCE---EETTTTEEEETTT
T ss_pred hCCCCCCCcCe---EeCCCCEEEcCCC
Confidence 56777777663 3345678888877
No 183
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.74 E-value=52 Score=21.06 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=23.8
Q ss_pred ccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 34 CFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 21 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 21 ILECPICLELIKE-PVSTKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp HTSCSSSCCCCSS-CCBCTTSCCCCSHHHHHHHH
T ss_pred CCCCcccChhhcC-eEECCCCCHHHHHHHHHHHH
Confidence 3578888877755 33346788899999887764
No 184
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=27.73 E-value=24 Score=15.39 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=8.9
Q ss_pred eeccccccccCC
Q 046210 130 FKCSHGGYSISP 141 (186)
Q Consensus 130 F~C~~C~~~L~~ 141 (186)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 578888887754
No 185
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=27.54 E-value=45 Score=18.98 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=19.9
Q ss_pred eeccccccccCCC-CceecCCccccHHHHhh
Q 046210 130 FKCSHGGYSISPS-NYAALEGIWYCKHHFSK 159 (186)
Q Consensus 130 F~C~~C~~~L~~~-~~~~~~g~~yC~~cy~k 159 (186)
.+|+.|++.-..- ....-.|...|.+|-..
T Consensus 12 ~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGPSVYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECSSCEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCCCCEehHHHHHH
Confidence 3699999876332 33334567789998654
No 186
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=27.52 E-value=22 Score=17.39 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=10.4
Q ss_pred ccceecccccccc
Q 046210 127 KSCFKCSHGGYSI 139 (186)
Q Consensus 127 ~~CF~C~~C~~~L 139 (186)
..|++|..|...|
T Consensus 5 wsclvcaacsvel 17 (31)
T 2lbz_A 5 WSCLVCAACSVEL 17 (31)
T ss_dssp TGGGGGGGCCSCS
T ss_pred HHHHHHHHhHHHH
Confidence 4688999998766
No 187
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=27.43 E-value=16 Score=27.82 Aligned_cols=15 Identities=13% Similarity=0.516 Sum_probs=10.4
Q ss_pred CCCCCCcccCCceec
Q 046210 4 IGTQQKCKVCEKTVY 18 (186)
Q Consensus 4 ~~~~~~C~~C~~~I~ 18 (186)
.+....|..|...|.
T Consensus 177 ~~~i~~C~iC~~iv~ 191 (238)
T 3nw0_A 177 PDAVKICNICHSLLI 191 (238)
T ss_dssp TTTCCBCTTTCSBCS
T ss_pred CCCCCcCcchhhHHh
Confidence 344667888888774
No 188
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=27.37 E-value=41 Score=23.53 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=25.9
Q ss_pred cccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 33 SCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
+=+.|..|...+........=|..||..|..+.+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH
Confidence 44788999888876333336789999999988763
No 189
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=27.36 E-value=22 Score=23.15 Aligned_cols=13 Identities=15% Similarity=0.641 Sum_probs=9.7
Q ss_pred CCCcccCCceecc
Q 046210 7 QQKCKVCEKTVYP 19 (186)
Q Consensus 7 ~~~C~~C~~~I~~ 19 (186)
...|..|...+..
T Consensus 25 ~~~C~ICl~~~~~ 37 (114)
T 1v87_A 25 EEDCIICMEKLAV 37 (114)
T ss_dssp SCEETTTTEETTS
T ss_pred CCcCccCChhhcC
Confidence 3579999888743
No 190
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.06 E-value=37 Score=20.35 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=24.9
Q ss_pred ccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 34 CFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 19 EVTCPICLELLTQ-PLSLDCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCCTTTCSCCSS-CBCCSSSCCBCTTHHHHHHH
T ss_pred CCCCCCCCcccCC-ceeCCCCCHHHHHHHHHHHH
Confidence 3788999888865 34446788999999987653
No 191
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=26.72 E-value=43 Score=20.27 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=20.2
Q ss_pred eeccccccccCCC-CceecCCccccHHHHhh
Q 046210 130 FKCSHGGYSISPS-NYAALEGIWYCKHHFSK 159 (186)
Q Consensus 130 F~C~~C~~~L~~~-~~~~~~g~~yC~~cy~k 159 (186)
.+|+.|++.-..- ....-.|...|..|-..
T Consensus 19 ~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~ 49 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGPSVYICDECVDL 49 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECSSCEEEHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCCCCChhHHHHHH
Confidence 3699999876332 33334567789999765
No 192
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.60 E-value=32 Score=20.84 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=15.6
Q ss_pred cccccccccccCCCccccCCeeecCcc
Q 046210 35 FKCSHCKGTLKLSNYSSMEGVLYFKPH 61 (186)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c 61 (186)
+.|-.|+.+|. +...++.++|..|
T Consensus 9 L~CP~ck~~L~---~~~~~~~LiC~~c 32 (68)
T 2hf1_A 9 LVCPLCKGPLV---FDKSKDELICKGD 32 (68)
T ss_dssp CBCTTTCCBCE---EETTTTEEEETTT
T ss_pred eECCCCCCcCe---EeCCCCEEEcCCC
Confidence 46777776664 3334677888776
No 193
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.52 E-value=34 Score=20.06 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=22.7
Q ss_pred eeccccccccCCCCceecCCccccHHHHhhhhc
Q 046210 130 FKCSHGGYSISPSNYAALEGIWYCKHHFSKLFK 162 (186)
Q Consensus 130 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~ 162 (186)
+.|..|...+.. .....=|..||..|..+.+.
T Consensus 21 ~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQK-PVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccCC-eEEcCCCChhhHHHHHHHHH
Confidence 578888777753 23346688899999888764
No 194
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=26.44 E-value=24 Score=23.44 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=15.4
Q ss_pred cccccccccccCCCccccCCeeecCcchhhhh
Q 046210 35 FKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66 (186)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 66 (186)
+.|..|...+.. .....=|..||..|..+.+
T Consensus 53 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~ 83 (124)
T 3fl2_A 53 FQCICCQELVFR-PITTVCQHNVCKDCLDRSF 83 (124)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHH
T ss_pred CCCCcCChHHcC-cEEeeCCCcccHHHHHHHH
Confidence 455555555543 2223445556666655443
No 195
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.38 E-value=46 Score=19.90 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=21.6
Q ss_pred eeccccccccCCCCceecCCccccHHHHhhhhcC
Q 046210 130 FKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKE 163 (186)
Q Consensus 130 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~ 163 (186)
+.|..|...+... ....=|..||..|..+.+..
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecw_A 20 VTCPICLELLKEP-VSADCNHSFCRACITLNYES 52 (85)
T ss_dssp TSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHH
T ss_pred CCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHh
Confidence 5677777776443 34456778888888775543
No 196
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.17 E-value=26 Score=15.49 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=9.2
Q ss_pred eeccccccccCC
Q 046210 130 FKCSHGGYSISP 141 (186)
Q Consensus 130 F~C~~C~~~L~~ 141 (186)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 678889887754
No 197
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.01 E-value=34 Score=20.73 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=14.8
Q ss_pred cccccccccccCCCccccCCeeecCcc
Q 046210 35 FKCSHCKGTLKLSNYSSMEGVLYFKPH 61 (186)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c 61 (186)
+.|-.|+.+|. +...++.++|..|
T Consensus 9 L~CP~ck~~L~---~~~~~~~LiC~~c 32 (68)
T 2jr6_A 9 LVCPVTKGRLE---YHQDKQELWSRQA 32 (68)
T ss_dssp CBCSSSCCBCE---EETTTTEEEETTT
T ss_pred eECCCCCCcCe---EeCCCCEEEcCCC
Confidence 46667766653 2334577777776
No 198
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.67 E-value=24 Score=15.56 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=9.1
Q ss_pred eeccccccccCC
Q 046210 130 FKCSHGGYSISP 141 (186)
Q Consensus 130 F~C~~C~~~L~~ 141 (186)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 678889887743
No 199
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=25.43 E-value=31 Score=21.00 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=14.6
Q ss_pred cccccccccccCCCccccCCeeecCcc
Q 046210 35 FKCSHCKGTLKLSNYSSMEGVLYFKPH 61 (186)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c 61 (186)
+.|-.|+.+|. +...+|.++|..|
T Consensus 9 L~CP~ck~~L~---~~~~~~~LiC~~c 32 (70)
T 2js4_A 9 LVCPVCKGRLE---FQRAQAELVCNAD 32 (70)
T ss_dssp CBCTTTCCBEE---EETTTTEEEETTT
T ss_pred eECCCCCCcCE---EeCCCCEEEcCCC
Confidence 45666666653 2334667777766
No 200
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.20 E-value=35 Score=20.74 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=15.2
Q ss_pred cccccccccccCCCccccCCeeecCcc
Q 046210 35 FKCSHCKGTLKLSNYSSMEGVLYFKPH 61 (186)
Q Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~c 61 (186)
+.|-.|+.+|. +...++.++|..|
T Consensus 9 L~CP~ck~~L~---~~~~~~~LiC~~c 32 (69)
T 2pk7_A 9 LACPICKGPLK---LSADKTELISKGA 32 (69)
T ss_dssp CCCTTTCCCCE---ECTTSSEEEETTT
T ss_pred eeCCCCCCcCe---EeCCCCEEEcCCC
Confidence 46677776664 2334677778776
No 201
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=25.14 E-value=34 Score=24.95 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=27.6
Q ss_pred CCCcccCCceeccCceEE--eCCccccccccccccccccccCCCccccCCeeecCcchhh
Q 046210 7 QQKCKVCEKTVYPVEQLS--ADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQ 64 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~i~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 64 (186)
...|..|+.. ++.+. .-.+.||..|.. -+|. ....|..+|..|...
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~-----p~l~----~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHL-----PALQ----DVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTST-----TCCS----SCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCC-----CCcc----cCCCCCCCCcCccCC
Confidence 4578999853 44432 335778877742 1222 234677889888644
No 202
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.11 E-value=59 Score=17.82 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=23.2
Q ss_pred eeccccccccCCCCceecCCccccHHHHhhhhc
Q 046210 130 FKCSHGGYSISPSNYAALEGIWYCKHHFSKLFK 162 (186)
Q Consensus 130 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~ 162 (186)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-VIIECGHNFCKACITRWWE 47 (58)
T ss_dssp CBCSSSCCBCSSC-CCCSSCCCCCHHHHHHHTT
T ss_pred CCCccCCcccCcc-EeCCCCCccCHHHHHHHHH
Confidence 5688888777543 3445688899999888754
No 203
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.82 E-value=82 Score=17.60 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=18.3
Q ss_pred eeccccccccCCCCceecCCccccHHHHhhhhcCCC
Q 046210 130 FKCSHGGYSISPSNYAALEGIWYCKHHFSKLFKEKD 165 (186)
Q Consensus 130 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~~k~ 165 (186)
|.|..|++.+........+...-|..| .+.|..+.
T Consensus 19 ~~C~~C~k~f~~~~~l~~~~~~~C~~C-~~~f~~~~ 53 (73)
T 2ctu_A 19 QKCSKCGIIFIRRSTLSRRKTPMCEKC-RKDSCQEA 53 (73)
T ss_dssp EECSSSCCEEECCCCCCCSSSCCCHHH-HHTCSCCC
T ss_pred eeCCcccchhCCHHHhCcCCCCCCCCC-ChhhcCHH
Confidence 667777777644322222333347776 34455444
No 204
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=24.50 E-value=42 Score=22.15 Aligned_cols=35 Identities=23% Similarity=0.603 Sum_probs=18.2
Q ss_pred CCcccCCceeccCceE--------EeCCcccc-cccccccccccc
Q 046210 8 QKCKVCEKTVYPVEQL--------SADGIVYH-KSCFKCSHCKGT 43 (186)
Q Consensus 8 ~~C~~C~~~I~~~~~i--------~~~g~~~H-~~CF~C~~C~~~ 43 (186)
-.|..|+...+.. -+ .+....|. ++|-.|..|+..
T Consensus 27 l~C~~C~~~~H~~-Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~ 70 (112)
T 3v43_A 27 ISCADCGNSGHPS-CLKFSPELTVRVKALRWQCIECKTCSSCRDQ 70 (112)
T ss_dssp EECTTTCCEECHH-HHTCCHHHHHHHHTSCCCCTTTCCBTTTCCC
T ss_pred eEhhhcCCCCCCc-hhcCCHHHHHHhhccccccccCCccccccCc
Confidence 3588887776321 11 12233443 556666677653
No 205
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=24.38 E-value=34 Score=22.47 Aligned_cols=39 Identities=15% Similarity=0.445 Sum_probs=23.3
Q ss_pred CCCCcccCCceeccC-------------c---e-EEeCCcccccccc--------ccccccccc
Q 046210 6 TQQKCKVCEKTVYPV-------------E---Q-LSADGIVYHKSCF--------KCSHCKGTL 44 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~-------------~---~-i~~~g~~~H~~CF--------~C~~C~~~L 44 (186)
....|+.|...+... + . +..-+-.||..|+ +|-.|+..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 456788998877432 1 1 2334666787776 466666554
No 206
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=24.20 E-value=31 Score=15.39 Aligned_cols=13 Identities=8% Similarity=0.355 Sum_probs=9.7
Q ss_pred eeccccccccCCC
Q 046210 130 FKCSHGGYSISPS 142 (186)
Q Consensus 130 F~C~~C~~~L~~~ 142 (186)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 6788898887543
No 207
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=23.83 E-value=51 Score=21.57 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=32.3
Q ss_pred CCCCcccCCceeccC-ceEEeC---CccccccccccccccccccCCCcc----ccCCeeecCcchhhh
Q 046210 6 TQQKCKVCEKTVYPV-EQLSAD---GIVYHKSCFKCSHCKGTLKLSNYS----SMEGVLYFKPHFEQL 65 (186)
Q Consensus 6 ~~~~C~~C~~~I~~~-~~i~~~---g~~~H~~CF~C~~C~~~L~~~~~~----~~~g~~yC~~cy~~~ 65 (186)
..-.|..|+++.... ++|.-. ..-||..|.. |....+. ..++..+|..|..+.
T Consensus 2 ~~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg-------lt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 2 LVYPCGACRSEVNDDQDAILCEASCQKWFHRECTG-------MTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT-------CCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CcCCCCCCCCccCCCCCEEEecCCcccccccccCC-------cCHHHHHhhccCCCCCEECccccCcC
Confidence 345799999997443 456554 4557877742 2221111 235788999997654
No 208
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=23.28 E-value=17 Score=22.25 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=16.1
Q ss_pred eeccccccccCCCCceecCCccccHHHHh
Q 046210 130 FKCSHGGYSISPSNYAALEGIWYCKHHFS 158 (186)
Q Consensus 130 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~ 158 (186)
+.|..|+..+... ..+.+.|..|=.
T Consensus 29 Y~C~~CG~~~e~~----~~d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLS----RTDAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCC----TTSTTCCSSSCC
T ss_pred EECCCCCCcceeC----CCCCccCCCCCc
Confidence 5688888875433 345567877755
No 209
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.17 E-value=30 Score=15.29 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=9.6
Q ss_pred eeccccccccCCC
Q 046210 130 FKCSHGGYSISPS 142 (186)
Q Consensus 130 F~C~~C~~~L~~~ 142 (186)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 6788898877544
No 210
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.93 E-value=39 Score=18.68 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=4.7
Q ss_pred CCeeecCcc
Q 046210 53 EGVLYFKPH 61 (186)
Q Consensus 53 ~g~~yC~~c 61 (186)
.|.+.|..|
T Consensus 22 ~gelvC~~C 30 (50)
T 1pft_A 22 RGEIVCAKC 30 (50)
T ss_dssp TTEEEESSS
T ss_pred CCeEECccc
Confidence 445555555
No 211
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.79 E-value=35 Score=14.87 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=9.2
Q ss_pred eeccccccccCCC
Q 046210 130 FKCSHGGYSISPS 142 (186)
Q Consensus 130 F~C~~C~~~L~~~ 142 (186)
|.|..|++.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 5688888877543
No 212
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.49 E-value=53 Score=20.51 Aligned_cols=33 Identities=6% Similarity=0.056 Sum_probs=22.4
Q ss_pred eeccccccccCCCCcee--cCCccccHHHHhhhhc
Q 046210 130 FKCSHGGYSISPSNYAA--LEGIWYCKHHFSKLFK 162 (186)
Q Consensus 130 F~C~~C~~~L~~~~~~~--~~g~~yC~~cy~k~~~ 162 (186)
|.|..|-..+....... .=|..||..|..+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~ 40 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVE 40 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHH
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHHH
Confidence 56778877765554443 3588899999877653
No 213
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.46 E-value=16 Score=23.30 Aligned_cols=29 Identities=24% Similarity=0.539 Sum_probs=15.0
Q ss_pred CCCcccCCceeccCce--EEeCCccccccccc
Q 046210 7 QQKCKVCEKTVYPVEQ--LSADGIVYHKSCFK 36 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~--i~~~g~~~H~~CF~ 36 (186)
...|..|...- ..+. -.+-++.||..||+
T Consensus 15 D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~ 45 (89)
T 1wil_A 15 DEMCDVCEVWT-AESLFPCRVCTRVFHDGCLR 45 (89)
T ss_dssp SCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHH
T ss_pred CcccCcccccc-ccceeccccccccccHhhcc
Confidence 34566766433 2222 24456666666655
No 214
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=22.41 E-value=34 Score=20.67 Aligned_cols=24 Identities=25% Similarity=0.609 Sum_probs=15.8
Q ss_pred CCcccCCceeccCce---EEeCCcccc
Q 046210 8 QKCKVCEKTVYPVEQ---LSADGIVYH 31 (186)
Q Consensus 8 ~~C~~C~~~I~~~~~---i~~~g~~~H 31 (186)
..|.-|+..|++|.- |..+|++++
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 30 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTH 30 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEE
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEE
Confidence 568888888877753 344556665
No 215
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.38 E-value=37 Score=20.49 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=17.3
Q ss_pred CCCcccCCceeccCce---EEeCCcccc
Q 046210 7 QQKCKVCEKTVYPVEQ---LSADGIVYH 31 (186)
Q Consensus 7 ~~~C~~C~~~I~~~~~---i~~~g~~~H 31 (186)
...|.-|+.+|++|.- |..+|++++
T Consensus 4 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 31 (66)
T 3j21_V 4 WNVCSYCGKPFEPGTGKMYVRNDGRVLF 31 (66)
T ss_dssp CCBCTTTCSBCCTTCCEEEECSSSCEEE
T ss_pred eeEecCcCCcccCCCCeEEEecCCcEEE
Confidence 4578888888888753 455666666
No 216
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.32 E-value=29 Score=15.24 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=8.8
Q ss_pred eeccccccccCC
Q 046210 130 FKCSHGGYSISP 141 (186)
Q Consensus 130 F~C~~C~~~L~~ 141 (186)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 678888887643
No 217
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.14 E-value=30 Score=15.24 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=9.1
Q ss_pred eeccccccccCC
Q 046210 130 FKCSHGGYSISP 141 (186)
Q Consensus 130 F~C~~C~~~L~~ 141 (186)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 678889887744
No 218
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.09 E-value=36 Score=14.99 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=9.6
Q ss_pred eeccccccccCCC
Q 046210 130 FKCSHGGYSISPS 142 (186)
Q Consensus 130 F~C~~C~~~L~~~ 142 (186)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 6788888887543
No 219
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.35 E-value=19 Score=15.71 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=9.1
Q ss_pred eeccccccccCCC
Q 046210 130 FKCSHGGYSISPS 142 (186)
Q Consensus 130 F~C~~C~~~L~~~ 142 (186)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5788888877543
No 220
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=21.52 E-value=66 Score=22.29 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=24.1
Q ss_pred ccccccccccccCCCccccCCeeecCcchhhhh
Q 046210 34 CFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLF 66 (186)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 66 (186)
=+.|..|...+.. .....=|..||..|..+.+
T Consensus 78 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~ 109 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-PVTTECFHNVCKDCLQRSF 109 (150)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHH
T ss_pred CCEeecCChhhcC-CEEcCCCCchhHHHHHHHH
Confidence 4788899887765 4445678889999987776
No 221
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=21.45 E-value=66 Score=20.85 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=25.4
Q ss_pred ccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 34 CFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 34 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 23 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 23 SISCQICEHILAD-PVETSCKHLFCRICILRCLK 55 (116)
T ss_dssp HTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHh
Confidence 4788999888865 44456889999999987764
No 222
>1k0p_A DNA polymerase alpha catalytic subunit; zinc finger protein, DNA binding domain, transferase; HET: DNA; NMR {Synthetic} SCOP: g.67.1.1 PDB: 1k18_A*
Probab=21.29 E-value=56 Score=16.49 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=11.2
Q ss_pred CCCCCCCCCcccCCc
Q 046210 1 MSFIGTQQKCKVCEK 15 (186)
Q Consensus 1 ~~~~~~~~~C~~C~~ 15 (186)
+.|+...+.|..|.+
T Consensus 16 l~~~~~gP~C~~C~~ 30 (31)
T 1k0p_A 16 LQFSRTGPLCPACMK 30 (31)
T ss_dssp SCSCSSSSCSTTCCC
T ss_pred EeeeccCCcCccccC
Confidence 356777888988875
No 223
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.76 E-value=32 Score=15.16 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=9.0
Q ss_pred eeccccccccCC
Q 046210 130 FKCSHGGYSISP 141 (186)
Q Consensus 130 F~C~~C~~~L~~ 141 (186)
|.|..|++.+..
T Consensus 4 ~~C~~C~~~f~~ 15 (30)
T 2m0d_A 4 YQCDYCGRSFSD 15 (30)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 678888887643
No 224
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=20.44 E-value=1.4e+02 Score=19.05 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=27.1
Q ss_pred CCcccCCceeccCceEEeC--CccccccccccccccccccCCCccccCCeeecCcchh
Q 046210 8 QKCKVCEKTVYPVEQLSAD--GIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFE 63 (186)
Q Consensus 8 ~~C~~C~~~I~~~~~i~~~--g~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~ 63 (186)
.+| .|+..-..+.+|.-. +..||..|..= ++. ...+..||..|-.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~-----~~~-----~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGI-----DRQ-----HIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTC-----CTT-----SCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCC-----Ccc-----CCCCCEECCCCcC
Confidence 467 688876555566443 46789888632 111 1223688999953
No 225
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=20.16 E-value=73 Score=23.08 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=29.1
Q ss_pred ccccccccccccccCCCccccCCeeecCcchhhhhc
Q 046210 32 KSCFKCSHCKGTLKLSNYSSMEGVLYFKPHFEQLFK 67 (186)
Q Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 67 (186)
+.-|.|..|...+.. ......|..||..|..+.+.
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~ 138 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 138 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHH
Confidence 677999999998876 66667999999999887764
No 226
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=20.15 E-value=1.6e+02 Score=17.83 Aligned_cols=14 Identities=14% Similarity=0.429 Sum_probs=8.0
Q ss_pred CCccccHHHHhhhh
Q 046210 148 EGIWYCKHHFSKLF 161 (186)
Q Consensus 148 ~g~~yC~~cy~k~~ 161 (186)
=|..+|..|+.+..
T Consensus 33 CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 33 CGYQICRFCWHRIR 46 (78)
T ss_dssp TSCCCCHHHHHHHT
T ss_pred CCCCcCHHHHHHHH
Confidence 45556666665554
No 227
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=20.15 E-value=64 Score=22.14 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=23.4
Q ss_pred eeccccccccCCCCceecCCccccHHHHhhhhc
Q 046210 130 FKCSHGGYSISPSNYAALEGIWYCKHHFSKLFK 162 (186)
Q Consensus 130 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~k~~~ 162 (186)
|.|..|...|... ....=|..||..|..+.+.
T Consensus 32 ~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 32 YLCSACRNVLRRP-FQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGG
T ss_pred cCCCCCChhhcCc-EECCCCCccCHHHHHHHHh
Confidence 6788888877443 4456788888888887664
Done!