BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046214
         (66 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type
          Atpase
 pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type
          Atpase
 pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type
          Atpase
 pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type
          Atpase
          Length = 736

 Score = 29.3 bits (64), Expect = 0.63,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 17 QTAPGACPFCGGMIRAMDVQ-SEWRFCFLPLYFKTKRKFY 55
          Q+APG CP CG  +    V  SE      P Y   +R+F+
Sbjct: 50 QSAPGHCPLCGMALEPETVTVSE---VVSPEYLDMRRRFW 86


>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
          Length = 722

 Score = 28.9 bits (63), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 7   CDEDERVLGTQTAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCAR 61
           C+ D+  L  +   G CP+CG   +  D   +   C  PL  +      C +C R
Sbjct: 127 CEHDKMFLPDRFVIGTCPYCGAEDQKGD---QCEVCGRPLTPEILINPRCAICGR 178


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.336    0.145    0.522 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,967,172
Number of Sequences: 62578
Number of extensions: 56347
Number of successful extensions: 142
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 4
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 45 (21.9 bits)