BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046214
         (66 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8U221|SYM_PYRFU Methionine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
           DSM 3638 / JCM 8422 / Vc1) GN=metG PE=3 SV=1
          Length = 724

 Score = 30.4 bits (67), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 14/63 (22%)

Query: 7   CDEDERVLGTQTAPGACPFCGGMIRAMD--------------VQSEWRFCFLPLYFKTKR 52
           C+ D+R L  +   G CP+CG   +  D              ++    FC  P+ F+   
Sbjct: 127 CEHDKRFLPDRFVIGTCPYCGAENQRGDQCEVCGRPLTPEILIEPRCAFCKNPITFREST 186

Query: 53  KFY 55
            +Y
Sbjct: 187 HYY 189


>sp|P86413|OSR1_XENLA Protein odd-skipped-related 1 OS=Xenopus laevis GN=osr1 PE=2 SV=1
          Length = 259

 Score = 30.0 bits (66), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 4   VCVCDEDERVLGTQTAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRL 63
           V    ED   LG     G+ P  GG++    +  E +     L  KTK++F C  C R  
Sbjct: 118 VAATQEDHCKLGLMNDQGSPPAMGGLLDVTKLTPEKKPTRGRLPSKTKKEFVCKFCGRHF 177


>sp|Q66JF8|OSR1_XENTR Protein odd-skipped-related 1 OS=Xenopus tropicalis GN=osr1 PE=2
           SV=1
          Length = 259

 Score = 29.3 bits (64), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 9   EDERVLGTQTAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRL 63
           ED   LG     G+ P  GG++    +  E +     L  KTK++F C  C R  
Sbjct: 123 EDHCKLGQMDDQGSPPTIGGLLDVTKLTPEKKPTRGRLPSKTKKEFVCKFCGRHF 177


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.336    0.145    0.522 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,319,219
Number of Sequences: 539616
Number of extensions: 749941
Number of successful extensions: 2834
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2833
Number of HSP's gapped (non-prelim): 3
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.8 bits)