Query 046214
Match_columns 66
No_of_seqs 48 out of 50
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:07:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k4x_A 30S ribosomal protein S 93.3 0.042 1.4E-06 31.4 1.9 38 7-63 9-46 (55)
2 3j20_Y 30S ribosomal protein S 91.8 0.13 4.6E-06 28.7 2.7 37 7-62 10-46 (50)
3 2fiy_A Protein FDHE homolog; F 91.0 0.086 3E-06 38.5 1.7 45 18-62 180-231 (309)
4 3o9x_A Uncharacterized HTH-typ 89.5 0.76 2.6E-05 27.8 4.8 43 22-64 4-47 (133)
5 3ga8_A HTH-type transcriptiona 87.0 1.1 3.7E-05 26.0 4.2 41 22-64 4-47 (78)
6 3u5c_f 40S ribosomal protein S 86.2 0.66 2.2E-05 30.4 3.3 41 6-64 107-149 (152)
7 2jr6_A UPF0434 protein NMA0874 84.1 0.7 2.4E-05 27.2 2.4 29 21-64 9-37 (68)
8 2js4_A UPF0434 protein BB2007; 84.0 0.84 2.9E-05 27.0 2.7 29 21-64 9-37 (70)
9 2hf1_A Tetraacyldisaccharide-1 83.1 0.85 2.9E-05 26.9 2.5 28 22-64 10-37 (68)
10 1k3x_A Endonuclease VIII; hydr 80.2 1 3.4E-05 31.6 2.4 26 22-60 236-261 (262)
11 2pk7_A Uncharacterized protein 79.5 1.1 3.6E-05 26.5 2.0 29 21-64 9-37 (69)
12 2xzf_A Formamidopyrimidine-DNA 79.2 1.2 4.1E-05 31.3 2.5 27 22-61 244-270 (271)
13 3u6p_A Formamidopyrimidine-DNA 78.5 1.2 4.1E-05 31.5 2.4 27 21-60 246-272 (273)
14 1k82_A Formamidopyrimidine-DNA 78.5 1.2 4.2E-05 31.3 2.4 26 22-60 242-267 (268)
15 1ee8_A MUTM (FPG) protein; bet 78.5 1.3 4.4E-05 31.2 2.5 28 21-61 236-263 (266)
16 2jny_A Uncharacterized BCR; st 78.1 1.6 5.5E-05 25.7 2.5 29 21-64 11-39 (67)
17 2kvh_A Zinc finger and BTB dom 77.0 0.91 3.1E-05 19.3 0.9 13 52-64 2-14 (27)
18 1rik_A E6APC1 peptide; E6-bind 74.9 1.1 3.9E-05 19.0 1.0 13 52-64 1-13 (29)
19 1vd4_A Transcription initiatio 74.3 0.61 2.1E-05 24.7 -0.1 39 19-65 13-51 (62)
20 2lvu_A Zinc finger and BTB dom 75.0 0.74 2.5E-05 19.5 0.0 13 52-64 1-13 (26)
21 3w0f_A Endonuclease 8-like 3; 72.5 1.5 5.2E-05 31.8 1.7 29 22-61 253-281 (287)
22 2lcq_A Putative toxin VAPC6; P 72.5 2.4 8.3E-05 27.1 2.4 29 6-34 134-162 (165)
23 2kpi_A Uncharacterized protein 72.5 3.6 0.00012 23.2 2.9 27 21-64 11-39 (56)
24 1pft_A TFIIB, PFTFIIBN; N-term 72.3 2.6 8.9E-05 22.4 2.2 30 21-64 6-35 (50)
25 2m0d_A Zinc finger and BTB dom 71.5 1.4 4.7E-05 18.6 0.8 13 52-64 2-14 (30)
26 2m0f_A Zinc finger and BTB dom 70.6 1.5 5E-05 18.4 0.8 13 52-64 1-13 (29)
27 1srk_A Zinc finger protein ZFP 70.4 1.6 5.4E-05 19.6 0.9 14 51-64 5-18 (35)
28 3a43_A HYPD, hydrogenase nicke 69.8 1.3 4.6E-05 28.5 0.8 11 20-30 107-117 (139)
29 2kvf_A Zinc finger and BTB dom 69.7 1.6 5.3E-05 18.5 0.8 13 52-64 2-14 (28)
30 1qyp_A RNA polymerase II; tran 69.6 4.5 0.00015 22.1 2.8 40 20-64 15-54 (57)
31 2d8y_A Eplin protein; LIM doma 68.6 0.72 2.5E-05 26.6 -0.7 42 18-65 13-54 (91)
32 1a7i_A QCRP2 (LIM1); LIM domai 67.5 1.4 4.8E-05 24.7 0.4 42 18-65 5-46 (81)
33 2elm_A Zinc finger protein 406 67.1 2.9 0.0001 19.2 1.5 14 51-64 7-20 (37)
34 2kvg_A Zinc finger and BTB dom 66.7 1.8 6E-05 18.6 0.6 13 52-64 2-14 (27)
35 3f6q_B LIM and senescent cell 66.7 1 3.4E-05 24.2 -0.3 40 18-64 9-50 (72)
36 2elx_A Zinc finger protein 406 66.3 2 6.9E-05 19.0 0.8 14 51-64 5-18 (35)
37 2lvt_A Zinc finger and BTB dom 67.4 1.5 5E-05 18.8 0.0 13 52-64 1-13 (29)
38 2kdx_A HYPA, hydrogenase/ureas 63.4 5.2 0.00018 24.6 2.5 12 18-29 87-99 (119)
39 2lvr_A Zinc finger and BTB dom 67.1 1.5 5.2E-05 18.6 0.0 13 52-64 2-14 (30)
40 2elq_A Zinc finger protein 406 62.3 2.6 8.8E-05 19.0 0.8 14 51-64 7-20 (36)
41 2elp_A Zinc finger protein 406 62.3 3 0.0001 18.9 1.0 14 51-64 7-20 (37)
42 1ard_A Yeast transcription fac 60.9 1.3 4.3E-05 18.7 -0.5 11 53-63 2-12 (29)
43 2elv_A Zinc finger protein 406 60.1 3.3 0.00011 18.6 0.9 14 51-64 7-20 (36)
44 1vq8_Z 50S ribosomal protein L 59.8 3.7 0.00013 25.0 1.3 36 13-63 20-55 (83)
45 2epc_A Zinc finger protein 32; 58.5 3.6 0.00012 19.0 0.9 14 51-64 9-22 (42)
46 2elt_A Zinc finger protein 406 58.2 3.4 0.00012 18.4 0.8 14 51-64 7-20 (36)
47 1njq_A Superman protein; zinc- 56.5 3.3 0.00011 19.1 0.6 14 51-64 4-17 (39)
48 2yu5_A Zinc finger protein 473 56.5 4 0.00014 19.2 0.9 14 51-64 10-23 (44)
49 1klr_A Zinc finger Y-chromosom 56.4 1.8 6.1E-05 18.2 -0.4 12 53-64 2-13 (30)
50 2m0e_A Zinc finger and BTB dom 55.8 1.7 6E-05 18.1 -0.5 11 53-63 2-12 (29)
51 2el5_A Zinc finger protein 268 55.8 3.9 0.00013 19.0 0.8 14 51-64 8-21 (42)
52 2a20_A Regulating synaptic mem 55.8 1.6 5.4E-05 26.1 -0.8 25 22-61 35-59 (62)
53 2cu8_A Cysteine-rich protein 2 55.7 2.1 7.2E-05 23.6 -0.3 41 18-64 7-47 (76)
54 3pwf_A Rubrerythrin; non heme 55.2 10 0.00036 25.0 3.1 12 18-29 151-162 (170)
55 2els_A Zinc finger protein 406 55.1 4.2 0.00014 18.2 0.8 14 51-64 7-20 (36)
56 2emb_A Zinc finger protein 473 54.3 4.2 0.00014 19.2 0.7 14 51-64 10-23 (44)
57 2qkd_A Zinc finger protein ZPR 54.2 7.5 0.00026 29.6 2.5 38 19-63 11-51 (404)
58 2epv_A Zinc finger protein 268 54.0 4.3 0.00015 19.3 0.8 14 51-64 10-23 (44)
59 2d9k_A FLN29 gene product; zin 54.0 0.59 2E-05 26.2 -2.8 40 17-63 14-53 (75)
60 1nui_A DNA primase/helicase; z 54.0 4.1 0.00014 27.4 0.9 15 15-29 9-23 (255)
61 2epw_A Zinc finger protein 268 53.8 4.7 0.00016 19.1 0.9 14 51-64 10-23 (46)
62 2emi_A Zinc finger protein 484 53.1 5 0.00017 19.1 0.9 14 51-64 10-23 (46)
63 2elo_A Zinc finger protein 406 52.9 2.9 9.9E-05 18.9 0.0 14 51-64 7-20 (37)
64 2eoy_A Zinc finger protein 473 52.6 5.1 0.00018 19.1 0.9 14 51-64 10-23 (46)
65 2ytf_A Zinc finger protein 268 52.5 4.8 0.00016 19.1 0.8 14 51-64 10-23 (46)
66 2em7_A Zinc finger protein 224 52.5 4.9 0.00017 19.1 0.9 14 51-64 10-23 (46)
67 2eow_A Zinc finger protein 347 52.4 4.9 0.00017 19.0 0.8 14 51-64 10-23 (46)
68 1paa_A Yeast transcription fac 52.3 2 6.7E-05 18.3 -0.6 11 53-63 2-12 (30)
69 3h0g_I DNA-directed RNA polyme 52.2 5.6 0.00019 24.7 1.3 31 21-62 5-35 (113)
70 2ytp_A Zinc finger protein 484 52.1 5.2 0.00018 19.0 0.9 14 51-64 10-23 (46)
71 2yts_A Zinc finger protein 484 52.0 4.9 0.00017 19.0 0.8 14 51-64 10-23 (46)
72 2eox_A Zinc finger protein 473 52.0 5.4 0.00018 18.7 0.9 14 51-64 10-23 (44)
73 2eoz_A Zinc finger protein 473 51.9 4.9 0.00017 19.1 0.8 14 51-64 10-23 (46)
74 2enc_A Zinc finger protein 224 51.9 4.9 0.00017 19.1 0.8 14 51-64 10-23 (46)
75 2eof_A Zinc finger protein 268 51.9 4.8 0.00016 18.8 0.7 14 51-64 10-23 (44)
76 3iuf_A Zinc finger protein UBI 51.7 4.7 0.00016 19.9 0.7 14 51-64 5-18 (48)
77 2yto_A Zinc finger protein 484 51.4 5.5 0.00019 19.0 0.9 14 51-64 10-23 (46)
78 1g47_A Pinch protein; LIM doma 51.3 1.8 6.3E-05 23.7 -1.0 44 15-64 6-50 (77)
79 2eoo_A ZFP-95, zinc finger pro 51.1 5.3 0.00018 19.0 0.8 14 51-64 10-23 (46)
80 2eml_A Zinc finger protein 28 51.1 5.2 0.00018 19.0 0.8 14 51-64 10-23 (46)
81 2eq0_A Zinc finger protein 347 51.1 5.2 0.00018 19.0 0.8 14 51-64 10-23 (46)
82 2en2_A B-cell lymphoma 6 prote 51.0 4.9 0.00017 18.6 0.7 14 51-64 9-22 (42)
83 2ytg_A ZFP-95, zinc finger pro 50.9 5.2 0.00018 19.0 0.8 14 51-64 10-23 (46)
84 2em4_A Zinc finger protein 28 50.9 5.2 0.00018 19.1 0.8 14 51-64 10-23 (46)
85 2eor_A Zinc finger protein 224 50.9 4.9 0.00017 19.0 0.7 14 51-64 10-23 (46)
86 2ytj_A Zinc finger protein 484 50.6 5 0.00017 19.0 0.7 14 51-64 10-23 (46)
87 2ene_A Zinc finger protein 347 50.6 5.3 0.00018 18.9 0.8 14 51-64 10-23 (46)
88 2epu_A Zinc finger protein 32; 50.5 5.4 0.00018 18.9 0.8 15 50-64 9-23 (45)
89 2emx_A Zinc finger protein 268 50.4 5.8 0.0002 18.6 0.9 14 51-64 8-21 (44)
90 4rxn_A Rubredoxin; electron tr 50.4 8.3 0.00028 21.8 1.7 9 22-30 38-46 (54)
91 2en3_A ZFP-95, zinc finger pro 50.3 5.7 0.0002 18.8 0.9 14 51-64 10-23 (46)
92 2eme_A Zinc finger protein 473 50.2 5.1 0.00018 18.9 0.7 14 51-64 10-23 (46)
93 2em8_A Zinc finger protein 224 50.1 5.5 0.00019 19.0 0.8 14 51-64 10-23 (46)
94 2emy_A Zinc finger protein 268 50.1 5.9 0.0002 18.8 0.9 14 51-64 10-23 (46)
95 2ysp_A Zinc finger protein 224 50.0 5.7 0.0002 18.8 0.9 14 51-64 10-23 (46)
96 1l8d_A DNA double-strand break 50.0 5.2 0.00018 23.9 0.8 12 20-31 47-58 (112)
97 2yu8_A Zinc finger protein 347 49.9 5.8 0.0002 18.8 0.9 14 51-64 10-23 (46)
98 2elr_A Zinc finger protein 406 49.8 2.4 8.4E-05 18.9 -0.5 13 51-63 7-19 (36)
99 2yrj_A Zinc finger protein 473 49.8 6 0.00021 18.7 0.9 14 51-64 10-23 (46)
100 2xzm_9 RPS31E; ribosome, trans 49.8 16 0.00056 24.9 3.4 41 5-63 101-141 (189)
101 2ep3_A Zinc finger protein 484 49.7 5.6 0.00019 18.9 0.8 14 51-64 10-23 (46)
102 2emj_A Zinc finger protein 28 49.6 5.6 0.00019 18.9 0.8 14 51-64 10-23 (46)
103 2em2_A Zinc finger protein 28 49.5 5.7 0.00019 18.9 0.8 14 51-64 10-23 (46)
104 2ept_A Zinc finger protein 32; 49.3 5.9 0.0002 18.3 0.8 14 51-64 8-21 (41)
105 2el4_A Zinc finger protein 268 49.1 5.8 0.0002 18.7 0.8 14 51-64 10-23 (46)
106 1iml_A CRIP, cysteine rich int 49.1 2.5 8.7E-05 23.3 -0.6 10 22-31 2-11 (76)
107 2ema_A Zinc finger protein 347 49.0 6.3 0.00022 18.7 0.9 14 51-64 10-23 (46)
108 2emm_A ZFP-95, zinc finger pro 49.0 5.9 0.0002 18.7 0.8 14 51-64 10-23 (46)
109 2emp_A Zinc finger protein 347 48.9 6 0.00021 18.7 0.9 14 51-64 10-23 (46)
110 2en6_A Zinc finger protein 268 48.8 6.4 0.00022 18.6 0.9 15 50-64 9-23 (46)
111 2em5_A ZFP-95, zinc finger pro 48.8 5.6 0.00019 18.9 0.7 14 51-64 10-23 (46)
112 2ep2_A Zinc finger protein 484 48.7 5.9 0.0002 18.8 0.8 14 51-64 10-23 (46)
113 2emh_A Zinc finger protein 484 48.6 5.3 0.00018 19.0 0.6 14 51-64 10-23 (46)
114 2el6_A Zinc finger protein 268 48.6 5.6 0.00019 18.9 0.7 14 51-64 10-23 (46)
115 2emf_A Zinc finger protein 484 48.6 6.7 0.00023 18.6 1.0 14 51-64 10-23 (46)
116 2em9_A Zinc finger protein 224 48.2 6.1 0.00021 18.6 0.8 14 51-64 10-23 (46)
117 1wii_A Hypothetical UPF0222 pr 47.7 15 0.00051 22.4 2.7 36 19-64 22-58 (85)
118 2em3_A Zinc finger protein 28 47.6 6.3 0.00022 18.7 0.8 14 51-64 10-23 (46)
119 2drp_A Protein (tramtrack DNA- 47.5 10 0.00035 19.1 1.7 13 51-63 8-20 (66)
120 1x4k_A Skeletal muscle LIM-pro 47.3 2.7 9.4E-05 22.7 -0.7 39 20-64 5-44 (72)
121 2ab3_A ZNF29; zinc finger prot 47.2 7.7 0.00026 16.0 1.0 13 52-64 1-15 (29)
122 2epr_A POZ-, at HOOK-, and zin 47.0 6.6 0.00022 19.0 0.8 15 50-64 9-23 (48)
123 2ytd_A Zinc finger protein 473 47.0 6.6 0.00022 18.6 0.8 14 51-64 10-23 (46)
124 2yso_A ZFP-95, zinc finger pro 46.7 6.4 0.00022 18.6 0.7 14 51-64 10-23 (46)
125 3cng_A Nudix hydrolase; struct 46.2 13 0.00043 23.4 2.3 13 22-34 5-17 (189)
126 1rim_A E6APC2 peptide; E6-bind 46.2 3 0.0001 18.9 -0.6 11 53-63 2-12 (33)
127 2en1_A Zinc finger protein 224 46.0 7 0.00024 18.5 0.8 14 51-64 10-23 (46)
128 2en8_A Zinc finger protein 224 45.9 6.5 0.00022 18.5 0.7 14 51-64 10-23 (46)
129 2ytk_A Zinc finger protein 347 45.7 7.1 0.00024 18.5 0.8 14 51-64 10-23 (46)
130 2eoj_A Zinc finger protein 268 45.6 4.1 0.00014 19.1 -0.1 14 51-64 10-23 (44)
131 4ayb_P DNA-directed RNA polyme 44.9 6.6 0.00022 22.4 0.7 12 20-31 22-34 (48)
132 1p7a_A BF3, BKLF, kruppel-like 44.5 3.2 0.00011 18.7 -0.6 12 52-63 10-21 (37)
133 1znf_A 31ST zinc finger from X 44.1 3.9 0.00013 16.9 -0.3 10 54-63 2-11 (27)
134 2egq_A FHL1 protein; LIM domai 43.5 7 0.00024 21.3 0.6 39 20-64 15-57 (77)
135 2xjy_A Rhombotin-2; oncoprotei 43.4 2.8 9.7E-05 25.2 -1.1 38 21-64 67-105 (131)
136 1vk6_A NADH pyrophosphatase; 1 42.9 16 0.00053 25.4 2.5 15 19-33 106-120 (269)
137 2ep0_A Zinc finger protein 28 42.8 8.3 0.00028 18.2 0.8 14 51-64 10-23 (46)
138 2cor_A Pinch protein; LIM doma 42.7 4 0.00014 23.0 -0.5 42 14-64 9-52 (79)
139 2eos_A B-cell lymphoma 6 prote 42.5 4.4 0.00015 18.9 -0.3 14 51-64 9-22 (42)
140 1yui_A GAGA-factor; complex (D 42.0 8.7 0.0003 19.1 0.8 14 51-64 22-35 (54)
141 2ely_A Zinc finger protein 224 41.9 4.6 0.00016 19.3 -0.3 14 51-64 10-23 (46)
142 1lko_A Rubrerythrin all-iron(I 41.8 25 0.00086 23.2 3.3 12 18-29 169-180 (191)
143 1zfo_A LAsp-1; LIM domain, zin 41.7 4 0.00014 20.1 -0.5 15 20-34 3-17 (31)
144 2ctu_A Zinc finger protein 483 41.5 14 0.00049 18.5 1.7 15 51-65 16-30 (73)
145 2eod_A TNF receptor-associated 41.2 14 0.00048 19.0 1.6 11 52-62 9-19 (66)
146 2yte_A Zinc finger protein 473 41.1 4.1 0.00014 18.8 -0.5 13 51-63 8-20 (42)
147 2dkt_A Ring finger and CHY zin 41.1 19 0.00064 24.0 2.6 38 16-60 67-105 (143)
148 2iyb_E Testin, TESS, TES; LIM 41.0 2.6 9E-05 22.8 -1.4 40 21-64 3-43 (65)
149 1nyp_A Pinch protein; LIM doma 40.9 2.6 9E-05 22.5 -1.4 38 20-64 5-42 (66)
150 3uk3_C Zinc finger protein 217 40.9 9.9 0.00034 18.5 0.9 14 51-64 30-43 (57)
151 6rxn_A Rubredoxin; electron tr 40.8 13 0.00045 20.3 1.5 16 14-29 22-39 (46)
152 1fv5_A First zinc finger of U- 40.5 6.1 0.00021 19.8 0.1 14 51-64 6-19 (36)
153 2co8_A NEDD9 interacting prote 40.4 2.2 7.6E-05 24.2 -1.8 38 19-64 14-53 (82)
154 1x61_A Thyroid receptor intera 40.1 3.5 0.00012 22.3 -1.0 40 20-64 5-44 (72)
155 2enf_A Zinc finger protein 347 39.5 4.8 0.00016 19.1 -0.4 14 51-64 10-23 (46)
156 2eov_A Zinc finger protein 484 39.3 4.8 0.00017 19.0 -0.4 14 51-64 10-23 (46)
157 1gh9_A 8.3 kDa protein (gene M 39.3 12 0.0004 22.2 1.2 19 22-42 6-24 (71)
158 2epq_A POZ-, at HOOK-, and zin 39.2 5.6 0.00019 18.9 -0.2 14 51-64 8-21 (45)
159 2l8e_A Polyhomeotic-like prote 39.1 3.1 0.00011 23.2 -1.3 21 22-42 20-40 (49)
160 2dj7_A Actin-binding LIM prote 39.0 5.8 0.0002 22.5 -0.2 40 19-64 14-53 (80)
161 4ddu_A Reverse gyrase; topoiso 38.9 11 0.00039 31.0 1.4 13 20-32 8-20 (1104)
162 2eon_A ZFP-95, zinc finger pro 38.5 5.1 0.00017 19.2 -0.4 14 51-64 10-23 (46)
163 3lpe_B DNA-directed RNA polyme 38.4 8.6 0.00029 22.1 0.5 7 22-28 15-21 (59)
164 1x62_A C-terminal LIM domain p 38.3 3.8 0.00013 22.8 -1.0 42 16-64 11-52 (79)
165 2eq3_A Zinc finger protein 347 38.3 5.7 0.00019 18.8 -0.3 14 51-64 10-23 (46)
166 1dl6_A Transcription factor II 38.2 13 0.00043 20.8 1.2 30 21-64 12-41 (58)
167 2jvm_A Uncharacterized protein 38.1 6.7 0.00023 24.1 -0.0 13 18-30 51-63 (80)
168 2ytb_A Zinc finger protein 32; 37.7 5 0.00017 18.5 -0.5 13 51-63 9-21 (42)
169 3lcz_A YCZA, inhibitor of trap 37.4 3.9 0.00013 22.8 -1.1 21 13-33 2-22 (53)
170 2emg_A Zinc finger protein 484 37.2 5.2 0.00018 19.0 -0.5 13 51-63 10-22 (46)
171 2enh_A Zinc finger protein 28 37.1 5.2 0.00018 19.1 -0.5 14 51-64 10-23 (46)
172 2en7_A Zinc finger protein 268 37.1 4 0.00014 19.1 -0.9 13 51-63 10-22 (44)
173 2yth_A Zinc finger protein 224 36.9 5.7 0.00019 18.9 -0.4 13 51-63 10-22 (46)
174 1x63_A Skeletal muscle LIM-pro 36.6 5.9 0.0002 21.9 -0.4 38 20-64 15-54 (82)
175 2kfq_A FP1; protein, de novo p 36.6 4 0.00014 18.2 -1.0 10 53-62 2-11 (32)
176 2yrm_A B-cell lymphoma 6 prote 36.4 6.3 0.00022 18.6 -0.3 14 51-64 8-21 (43)
177 2em6_A Zinc finger protein 224 36.4 6.2 0.00021 18.8 -0.3 13 51-63 10-22 (46)
178 2eq1_A Zinc finger protein 347 36.2 5 0.00017 19.1 -0.7 13 51-63 10-22 (46)
179 2eoe_A Zinc finger protein 347 36.1 6.5 0.00022 18.5 -0.3 14 51-64 10-23 (46)
180 1bbo_A Human enhancer-binding 36.1 12 0.00042 18.2 0.8 14 51-64 27-40 (57)
181 2zkr_2 60S ribosomal protein L 36.0 11 0.00038 24.0 0.8 25 18-60 14-38 (97)
182 2eps_A POZ-, at HOOK-, and zin 36.0 13 0.00045 18.4 0.9 13 51-63 10-22 (54)
183 2elz_A Zinc finger protein 224 35.9 5.9 0.0002 18.9 -0.4 13 51-63 10-22 (46)
184 2eou_A Zinc finger protein 473 35.8 5.4 0.00019 18.8 -0.6 13 51-63 10-22 (44)
185 2ytn_A Zinc finger protein 347 35.7 5.6 0.00019 18.9 -0.5 13 51-63 10-22 (46)
186 2x5c_A Hypothetical protein OR 35.6 18 0.00063 23.8 1.8 19 21-39 53-71 (131)
187 2en9_A Zinc finger protein 28 35.6 6.1 0.00021 18.8 -0.4 13 51-63 10-22 (46)
188 2ytq_A Zinc finger protein 268 35.2 6.4 0.00022 18.7 -0.4 13 51-63 10-22 (46)
189 2jrr_A Uncharacterized protein 35.2 6.6 0.00022 23.3 -0.4 13 18-30 38-50 (67)
190 2epx_A Zinc finger protein 28 35.2 6.3 0.00021 18.6 -0.4 14 51-64 10-23 (47)
191 1ryq_A DNA-directed RNA polyme 35.2 10 0.00035 22.7 0.5 9 20-28 23-31 (69)
192 1f2i_G Fusion of N-terminal 17 35.1 12 0.00043 19.2 0.8 14 51-64 47-60 (73)
193 2jz8_A Uncharacterized protein 35.1 12 0.0004 23.4 0.8 13 19-31 47-59 (87)
194 2emz_A ZFP-95, zinc finger pro 34.9 5.4 0.00018 19.0 -0.7 13 51-63 10-22 (46)
195 2ct1_A Transcriptional repress 34.8 12 0.0004 19.6 0.7 14 51-64 13-26 (77)
196 2eom_A ZFP-95, zinc finger pro 34.7 5.7 0.0002 19.0 -0.6 13 51-63 10-22 (46)
197 2ep1_A Zinc finger protein 484 34.6 5 0.00017 19.0 -0.8 13 51-63 10-22 (46)
198 1x3h_A Leupaxin; paxillin fami 34.4 7.4 0.00025 21.4 -0.2 38 21-65 16-53 (80)
199 1wyh_A SLIM 2, skeletal muscle 34.3 4.4 0.00015 21.8 -1.2 40 20-64 5-44 (72)
200 2eop_A Zinc finger protein 268 34.0 6.2 0.00021 18.6 -0.5 13 51-63 10-22 (46)
201 2riq_A Poly [ADP-ribose] polym 34.0 13 0.00044 25.1 0.9 14 18-31 76-89 (160)
202 2bl6_A Nucleocapsid protein P1 33.8 7 0.00024 19.6 -0.4 25 4-28 3-27 (37)
203 1v6g_A Actin binding LIM prote 33.7 7.5 0.00026 21.5 -0.3 11 21-31 16-26 (81)
204 2eoq_A Zinc finger protein 224 33.3 6.2 0.00021 18.7 -0.6 13 51-63 10-22 (46)
205 2d8z_A Four and A half LIM dom 33.0 7.7 0.00026 20.8 -0.3 38 20-64 5-42 (70)
206 2eoh_A Zinc finger protein 28 33.0 6.4 0.00022 18.7 -0.6 13 51-63 10-22 (46)
207 2eq4_A Zinc finger protein 224 33.0 7.1 0.00024 18.4 -0.4 13 51-63 10-22 (46)
208 2cup_A Skeletal muscle LIM-pro 33.0 8 0.00027 22.1 -0.3 12 20-31 5-16 (101)
209 2eq2_A Zinc finger protein 347 32.9 5.2 0.00018 19.0 -0.9 13 51-63 10-22 (46)
210 2epz_A Zinc finger protein 28 32.8 6.8 0.00023 18.5 -0.5 13 51-63 10-22 (46)
211 1rut_X Flinc4, fusion protein 32.6 4.6 0.00016 26.1 -1.5 37 22-64 71-108 (188)
212 2adr_A ADR1; transcription reg 32.6 13 0.00045 18.3 0.6 14 51-64 28-41 (60)
213 1tfi_A Transcriptional elongat 32.5 19 0.00066 19.6 1.3 16 15-30 4-19 (50)
214 1x6e_A Zinc finger protein 24; 32.3 16 0.00054 18.9 0.9 12 52-63 13-24 (72)
215 1sp2_A SP1F2; zinc finger, tra 32.3 7.6 0.00026 16.7 -0.4 11 53-63 2-14 (31)
216 1x5w_A Zinc finger protein 64, 32.2 14 0.00049 18.9 0.7 13 51-63 7-19 (70)
217 2ct7_A Ring finger protein 31; 32.2 20 0.00069 20.8 1.4 10 23-32 28-37 (86)
218 1x64_A Alpha-actinin-2 associa 32.2 7.4 0.00025 22.1 -0.5 39 19-64 24-62 (89)
219 2d9h_A Zinc finger protein 692 32.2 14 0.00049 19.3 0.7 14 51-64 36-49 (78)
220 2jrp_A Putative cytoplasmic pr 32.1 26 0.00089 21.3 2.0 12 21-32 3-14 (81)
221 2emk_A Zinc finger protein 28 32.0 7.3 0.00025 18.5 -0.5 13 51-63 10-22 (46)
222 2ds5_A CLPX, ATP-dependent CLP 31.9 11 0.00038 21.0 0.2 9 54-62 12-20 (51)
223 4esj_A Type-2 restriction enzy 31.9 21 0.00072 26.2 1.8 34 20-65 34-68 (257)
224 3fac_A Putative uncharacterize 31.7 20 0.00068 21.5 1.4 15 50-64 64-78 (118)
225 2yuc_A TNF receptor-associated 31.5 3.5 0.00012 22.8 -1.9 40 17-63 13-54 (76)
226 2con_A RUH-035 protein, NIN on 30.9 15 0.00052 22.2 0.7 11 19-29 29-39 (79)
227 1yuz_A Nigerythrin; rubrythrin 30.8 20 0.00068 24.2 1.4 12 18-29 184-195 (202)
228 2avu_E Flagellar transcription 30.6 15 0.00053 25.4 0.8 13 22-34 136-148 (192)
229 3h99_A Methionyl-tRNA syntheta 30.5 38 0.0013 25.3 3.0 22 7-28 142-163 (560)
230 4gzn_C ZFP-57, zinc finger pro 30.2 16 0.00055 19.7 0.7 14 51-64 30-43 (60)
231 2lce_A B-cell lymphoma 6 prote 30.2 16 0.00056 18.9 0.7 41 18-64 15-56 (74)
232 1va1_A Transcription factor SP 30.2 20 0.0007 16.1 1.0 14 51-64 6-21 (37)
233 4bbr_M Transcription initiatio 29.9 32 0.0011 24.7 2.4 29 22-64 23-53 (345)
234 1yc5_A NAD-dependent deacetyla 29.7 20 0.0007 24.3 1.3 12 20-31 145-156 (246)
235 2em0_A Zinc finger protein 224 29.7 8.4 0.00029 18.2 -0.5 13 51-63 10-22 (46)
236 3axs_A Probable N(2),N(2)-dime 29.7 33 0.0011 25.2 2.5 15 17-31 260-274 (392)
237 2ytm_A Zinc finger protein 28 29.4 6.4 0.00022 18.8 -1.0 13 51-63 10-22 (46)
238 2ytr_A Zinc finger protein 347 29.3 5.3 0.00018 18.9 -1.3 13 51-63 10-22 (46)
239 1x4s_A Protein FON, zinc finge 29.3 18 0.00063 20.9 0.9 14 50-63 23-36 (59)
240 2qgp_A HNH endonuclease; Q39X4 29.3 30 0.001 21.1 2.0 13 19-31 34-46 (112)
241 2yti_A Zinc finger protein 347 29.2 5.8 0.0002 18.8 -1.2 13 51-63 10-22 (46)
242 2apo_B Ribosome biogenesis pro 29.1 16 0.00056 21.1 0.6 12 20-31 18-29 (60)
243 1zfd_A SWI5; DNA binding motif 28.8 9.3 0.00032 16.4 -0.4 13 52-64 2-16 (32)
244 1x6h_A Transcriptional repress 28.5 19 0.00065 18.7 0.8 14 51-64 13-26 (86)
245 2dlo_A Thyroid receptor-intera 28.5 20 0.00068 19.7 0.9 39 19-64 14-52 (81)
246 1m2k_A Silent information regu 28.4 21 0.00072 24.4 1.2 12 20-31 142-153 (249)
247 2lt7_A Transcriptional regulat 28.1 22 0.00076 21.5 1.2 14 51-64 20-33 (133)
248 2jvx_A NF-kappa-B essential mo 27.8 21 0.00071 17.8 0.8 11 53-63 3-13 (28)
249 1twf_L ABC10-alpha, DNA-direct 27.5 46 0.0016 19.4 2.5 13 18-30 26-38 (70)
250 2dmi_A Teashirt homolog 3; zin 27.3 21 0.00071 19.9 0.9 14 51-64 17-30 (115)
251 2dar_A PDZ and LIM domain prot 27.3 36 0.0012 19.1 1.9 40 18-64 23-62 (90)
252 1q1a_A HST2 protein; ternary c 27.1 24 0.00082 24.6 1.3 12 20-31 163-174 (289)
253 2i5o_A DNA polymerase ETA; zin 26.8 26 0.0009 18.5 1.2 10 54-63 10-19 (39)
254 2l4z_A DNA endonuclease RBBP8, 26.8 19 0.00064 22.1 0.6 39 20-64 61-99 (123)
255 1x68_A FHL5 protein; four-and- 26.7 17 0.00057 19.9 0.4 12 20-31 5-16 (76)
256 2aus_D NOP10, ribosome biogene 26.6 30 0.001 20.0 1.5 13 20-32 17-29 (60)
257 2cot_A Zinc finger protein 435 26.6 21 0.00073 18.6 0.8 41 18-64 16-57 (77)
258 3h0g_L DNA-directed RNA polyme 26.5 27 0.00093 20.3 1.3 15 17-31 18-32 (63)
259 2rgt_A Fusion of LIM/homeobox 26.2 7.4 0.00025 24.6 -1.3 18 15-32 1-18 (169)
260 1ovx_A ATP-dependent CLP prote 26.1 15 0.00052 21.7 0.2 9 54-62 19-27 (67)
261 1a1h_A QGSR zinc finger peptid 26.1 22 0.00076 18.6 0.8 14 51-64 60-73 (90)
262 3bvo_A CO-chaperone protein HS 25.9 17 0.00057 24.7 0.3 28 19-62 9-36 (207)
263 2xqn_T Testin, TESS; metal-bin 25.8 30 0.001 20.4 1.5 37 20-64 63-104 (126)
264 2ytt_A Zinc finger protein 473 25.6 6.9 0.00024 18.6 -1.2 13 51-63 10-22 (46)
265 4e2x_A TCAB9; kijanose, tetron 25.5 42 0.0014 23.2 2.3 42 22-63 14-63 (416)
266 1ffk_W Ribosomal protein L37AE 25.4 12 0.00042 22.3 -0.3 17 12-28 19-35 (73)
267 3twl_A Formamidopyrimidine-DNA 24.6 20 0.00068 25.8 0.5 35 13-62 242-278 (310)
268 3u50_C Telomerase-associated p 24.4 31 0.0011 23.1 1.4 28 19-62 41-68 (172)
269 2ghf_A ZHX1, zinc fingers and 24.3 28 0.00094 20.6 1.1 14 51-64 48-61 (102)
270 2eln_A Zinc finger protein 406 24.2 29 0.00098 17.1 1.0 15 50-64 6-22 (38)
271 2kmk_A Zinc finger protein GFI 24.0 25 0.00084 18.0 0.7 14 51-64 55-68 (82)
272 2wbs_A Krueppel-like factor 4; 23.9 26 0.0009 18.3 0.8 14 51-64 63-76 (89)
273 1g25_A CDK-activating kinase a 23.9 20 0.00067 18.8 0.3 19 19-37 42-60 (65)
274 2ee8_A Protein ODD-skipped-rel 23.7 14 0.00049 20.2 -0.3 13 50-62 14-26 (106)
275 1x6m_A GFA, glutathione-depend 23.4 29 0.001 22.9 1.2 14 51-64 96-109 (196)
276 3ir9_A Peptide chain release f 23.3 65 0.0022 21.0 2.8 17 19-35 102-118 (166)
277 2dmd_A Zinc finger protein 64, 23.2 29 0.00098 18.5 0.9 14 51-64 62-75 (96)
278 3mjh_B Early endosome antigen 23.1 34 0.0011 17.7 1.1 15 51-65 3-17 (34)
279 3na7_A HP0958; flagellar bioge 23.0 29 0.001 23.6 1.1 16 50-65 219-234 (256)
280 1j2o_A FLIN2, fusion of rhombo 22.8 15 0.00052 21.8 -0.3 37 20-64 3-41 (114)
281 2cur_A Skeletal muscle LIM-pro 22.7 10 0.00036 20.2 -1.0 38 20-64 5-42 (69)
282 1q14_A HST2 protein; histone d 22.3 33 0.0011 25.2 1.3 12 20-31 171-182 (361)
283 2k9h_A Glycoprotein; hantaviru 22.2 27 0.00094 20.4 0.7 14 19-32 27-40 (57)
284 3k1f_M Transcription initiatio 22.1 57 0.0019 23.1 2.5 29 22-64 23-53 (197)
285 1bhi_A CRE-BP1, ATF-2; CRE bin 22.0 32 0.0011 15.2 0.9 14 51-64 4-19 (38)
286 3mhs_C SAGA-associated factor 21.9 25 0.00085 22.4 0.5 15 20-34 70-84 (99)
287 2yt9_A Zinc finger-containing 21.9 31 0.001 18.3 0.9 14 51-64 33-46 (95)
288 3p8b_A DNA-directed RNA polyme 21.8 21 0.00073 21.9 0.2 7 22-28 37-43 (81)
289 1ma3_A SIR2-AF2, transcription 21.6 35 0.0012 23.3 1.3 8 21-28 148-155 (253)
290 2lv2_A Insulinoma-associated p 21.5 27 0.00092 20.0 0.6 38 21-64 29-67 (85)
291 1j8f_A SIRT2, sirtuin 2, isofo 21.3 36 0.0012 24.4 1.3 12 20-31 185-196 (323)
292 2ent_A Krueppel-like factor 15 21.2 36 0.0012 15.8 1.0 14 51-64 10-25 (48)
293 4a17_Y RPL37A, 60S ribosomal p 21.2 27 0.00094 22.3 0.6 11 52-62 35-45 (103)
294 2wbt_A B-129; zinc finger; 2.7 20.9 28 0.00096 19.8 0.6 14 51-64 72-85 (129)
295 2owo_A DNA ligase; protein-DNA 20.6 43 0.0015 26.9 1.8 15 18-32 403-417 (671)
296 3jyw_9 60S ribosomal protein L 20.5 29 0.001 20.7 0.6 17 13-29 19-35 (72)
297 3j21_i 50S ribosomal protein L 20.2 29 0.00099 21.3 0.6 17 13-29 28-44 (83)
No 1
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=93.33 E-value=0.042 Score=31.40 Aligned_cols=38 Identities=18% Similarity=0.495 Sum_probs=25.6
Q ss_pred ecCcceeeeeccCCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeeccccee
Q 046214 7 CDEDERVLGTQTAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRL 63 (66)
Q Consensus 7 cde~~kv~~~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L 63 (66)
+|+ +++... --.||.||.++. +. ++..++.|..|+-..
T Consensus 9 v~~-gki~~~---~~fCPkCG~~~~------------ma---~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 9 IAD-GKLVRK---HRFCPRCGPGVF------------LA---EHADRYSCGRCGYTE 46 (55)
T ss_dssp CCC-CCCCCS---SCCCTTTTTTCC------------CE---ECSSEEECTTTCCCE
T ss_pred EcC-CEEEEc---cccCcCCCCcee------------Ee---ccCCEEECCCCCCEE
Confidence 455 665442 467999998772 11 445699999998653
No 2
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.82 E-value=0.13 Score=28.74 Aligned_cols=37 Identities=24% Similarity=0.543 Sum_probs=25.0
Q ss_pred ecCcceeeeeccCCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccce
Q 046214 7 CDEDERVLGTQTAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARR 62 (66)
Q Consensus 7 cde~~kv~~~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~ 62 (66)
+| ++||... .--||.||.++..++ +..++.|..||-.
T Consensus 10 v~-~~kv~~~---~k~CP~CG~~~fm~~---------------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 10 IK-DGKVIRK---NKFCPRCGPGVFMAD---------------HGDRWACGKCGYT 46 (50)
T ss_dssp EC-SSCEECS---SEECSSSCSSCEEEE---------------CSSEEECSSSCCE
T ss_pred EE-CCEEEEe---cccCCCCCCceEEec---------------CCCeEECCCCCCE
Confidence 35 5666654 345999998875443 2467889999854
No 3
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=91.05 E-value=0.086 Score=38.52 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=33.8
Q ss_pred cCCCcCCCCCCceEEEEec-----eeeEEEEEeeeeeecc--EEEeecccce
Q 046214 18 TAPGACPFCGGMIRAMDVQ-----SEWRFCFLPLYFKTKR--KFYCTVCARR 62 (66)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dve-----s~~rfCflP~~~k~kr--k~~Ct~C~r~ 62 (66)
...|.||-||+.-++.-|. ...|+++=.+|--.|+ +..|+.||..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4579999999999887664 5668887777755553 5688888853
No 4
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=89.46 E-value=0.76 Score=27.76 Aligned_cols=43 Identities=19% Similarity=0.455 Sum_probs=26.6
Q ss_pred cCCCCCCceEEEEece-eeEEEEEeeeeeeccEEEeecccceee
Q 046214 22 ACPFCGGMIRAMDVQS-EWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 22 ~Cp~CGG~v~a~Dves-~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
.||.||+.....+.++ ...+--.-+-.+.=..++|..||..+-
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEee
Confidence 5999999865544433 223333344444445789999997653
No 5
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=87.04 E-value=1.1 Score=25.97 Aligned_cols=41 Identities=22% Similarity=0.500 Sum_probs=24.1
Q ss_pred cCCCCCCc-e--EEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 22 ACPFCGGM-I--RAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 22 ~Cp~CGG~-v--~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
.||.||++ + ...|+.-.+.=.-+ -.+.=...+|+.||..+-
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~--~I~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKT--VLKGIHGLYCVHCEESIM 47 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEE--EEEEEEEEEETTTCCEEC
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEE--EEcCceeEECCCCCCEEE
Confidence 59999976 3 22333333332222 224456789999998764
No 6
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=86.21 E-value=0.66 Score=30.42 Aligned_cols=41 Identities=22% Similarity=0.495 Sum_probs=29.4
Q ss_pred EecCcceeeeeccCCCcCCC--CCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 6 VCDEDERVLGTQTAPGACPF--CGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 6 vcde~~kv~~~~~ApG~Cp~--CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
=+|+++||.+.+ -.||+ ||.+|-.++- +.+++|-.|+-.+.
T Consensus 107 ~~~~~~~~~~~~---~~c~~~~cg~g~fma~h---------------~~r~~cgkc~~t~~ 149 (152)
T 3u5c_f 107 KVDAEGKVTKLR---RECSNPTCGAGVFLANH---------------KDRLYCGKCHSVYK 149 (152)
T ss_dssp EECSSSCEECCS---CBCCSTTSCSSSBEEEC---------------SSCEEESSSSSCCE
T ss_pred EEccCCeEEECc---CcCCCccCCCceEeccc---------------CCCcccCCCceEEE
Confidence 368888887654 35999 9988766544 35788888886553
No 7
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=84.15 E-value=0.7 Score=27.24 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=20.9
Q ss_pred CcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 21 GACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
-+||.|+|++...+. +....|+.|++.+-
T Consensus 9 L~CP~ck~~L~~~~~---------------~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQD---------------KQELWSRQAKLAYP 37 (68)
T ss_dssp CBCSSSCCBCEEETT---------------TTEEEETTTTEEEE
T ss_pred eECCCCCCcCeEeCC---------------CCEEEcCCCCcEec
Confidence 379999999876432 35667888887653
No 8
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=84.04 E-value=0.84 Score=27.02 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=20.7
Q ss_pred CcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 21 GACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
-+||.|+|++...+. .....|+.|++.+-
T Consensus 9 L~CP~ck~~L~~~~~---------------~~~LiC~~cg~~YP 37 (70)
T 2js4_A 9 LVCPVCKGRLEFQRA---------------QAELVCNADRLAFP 37 (70)
T ss_dssp CBCTTTCCBEEEETT---------------TTEEEETTTTEEEE
T ss_pred eECCCCCCcCEEeCC---------------CCEEEcCCCCceec
Confidence 379999998875432 35667888887653
No 9
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=83.15 E-value=0.85 Score=26.87 Aligned_cols=28 Identities=21% Similarity=0.454 Sum_probs=20.5
Q ss_pred cCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 22 ACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
+||.|+|++...+. +....|+.|++.+-
T Consensus 10 ~CP~ck~~L~~~~~---------------~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 10 VCPLCKGPLVFDKS---------------KDELICKGDRLAFP 37 (68)
T ss_dssp BCTTTCCBCEEETT---------------TTEEEETTTTEEEE
T ss_pred ECCCCCCcCeEeCC---------------CCEEEcCCCCcEec
Confidence 79999999876432 45667888887653
No 10
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=80.20 E-value=1 Score=31.58 Aligned_cols=26 Identities=23% Similarity=0.811 Sum_probs=19.0
Q ss_pred cCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeeccc
Q 046214 22 ACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCA 60 (66)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~ 60 (66)
.||+||+++.-..+- ....|+|+.|-
T Consensus 236 pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKTTLS-------------SRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEEEET-------------TEEEEECTTTC
T ss_pred CCCCCCCEeEEEEEC-------------CCCeEECCCCC
Confidence 499999999887775 34456666663
No 11
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=79.49 E-value=1.1 Score=26.53 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=20.5
Q ss_pred CcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 21 GACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
-+||.|+|++...+ + +....|+.|++.+-
T Consensus 9 L~CP~ck~~L~~~~-~--------------~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 9 LACPICKGPLKLSA-D--------------KTELISKGAGLAYP 37 (69)
T ss_dssp CCCTTTCCCCEECT-T--------------SSEEEETTTTEEEE
T ss_pred eeCCCCCCcCeEeC-C--------------CCEEEcCCCCcEec
Confidence 37999999987532 2 35667888887653
No 12
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=79.21 E-value=1.2 Score=31.33 Aligned_cols=27 Identities=30% Similarity=0.860 Sum_probs=20.4
Q ss_pred cCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccc
Q 046214 22 ACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCAR 61 (66)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r 61 (66)
.||+||+.+.-..+- ....|+|+.|-+
T Consensus 244 pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAEIQKIKVA-------------GRGTHFCPVCQQ 270 (271)
T ss_dssp BCTTTCCBCEEEEET-------------TEEEEECTTTSC
T ss_pred CCCCCCCEeeEEEEC-------------CCceEECCCCCC
Confidence 499999999887775 355677777754
No 13
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=78.55 E-value=1.2 Score=31.48 Aligned_cols=27 Identities=30% Similarity=0.691 Sum_probs=20.0
Q ss_pred CcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeeccc
Q 046214 21 GACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCA 60 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~ 60 (66)
-.||+||+.+.-..+- ...-|+|+.|-
T Consensus 246 ~pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVA-------------GRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEET-------------TEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEEC-------------CCCeEECCCCC
Confidence 4699999999877764 25567777774
No 14
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=78.49 E-value=1.2 Score=31.31 Aligned_cols=26 Identities=35% Similarity=0.843 Sum_probs=19.3
Q ss_pred cCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeeccc
Q 046214 22 ACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCA 60 (66)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~ 60 (66)
.||+||+.+.-..+- ....|+|+.|-
T Consensus 242 pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ 267 (268)
T 1k82_A 242 PCRVCGTPIVATKHA-------------QRATFYCRQCQ 267 (268)
T ss_dssp BCTTTCCBCEEEEET-------------TEEEEECTTTC
T ss_pred CCCCCCCEeeEEEEC-------------CCceEECCCCC
Confidence 499999999887775 24556777763
No 15
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=78.47 E-value=1.3 Score=31.23 Aligned_cols=28 Identities=25% Similarity=0.673 Sum_probs=21.0
Q ss_pred CcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccc
Q 046214 21 GACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCAR 61 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r 61 (66)
-.||+||+.+.-..+- ....|+|+.|-+
T Consensus 236 ~pC~~CG~~I~~~~~~-------------gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVA-------------GRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESS-------------SCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEEC-------------CCceEECCCCCC
Confidence 3499999999887774 356677887754
No 16
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=78.07 E-value=1.6 Score=25.67 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=20.6
Q ss_pred CcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 21 GACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
-+||.|+|++.... .+....|+.|++.+-
T Consensus 11 L~CP~ck~~L~~~~---------------~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 11 LACPKDKGPLRYLE---------------SEQLLVNERLNLAYR 39 (67)
T ss_dssp CBCTTTCCBCEEET---------------TTTEEEETTTTEEEE
T ss_pred hCCCCCCCcCeEeC---------------CCCEEEcCCCCcccc
Confidence 47999999887532 245667888887653
No 17
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=76.96 E-value=0.91 Score=19.33 Aligned_cols=13 Identities=31% Similarity=0.920 Sum_probs=10.1
Q ss_pred cEEEeecccceee
Q 046214 52 RKFYCTVCARRLV 64 (66)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (66)
+.|.|+.||+...
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvh_A 2 KPFSCSLCPQRSR 14 (27)
T ss_dssp CCEECSSSSCEES
T ss_pred cCccCCCcChhhC
Confidence 5688999988754
No 18
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=74.94 E-value=1.1 Score=18.97 Aligned_cols=13 Identities=38% Similarity=0.991 Sum_probs=9.6
Q ss_pred cEEEeecccceee
Q 046214 52 RKFYCTVCARRLV 64 (66)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (66)
+.|.|+.|++...
T Consensus 1 k~~~C~~C~k~f~ 13 (29)
T 1rik_A 1 YKFACPECPKRFM 13 (29)
T ss_dssp CCEECSSSSCEES
T ss_pred CCccCCCCCchhC
Confidence 3588888888754
No 19
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=74.33 E-value=0.61 Score=24.65 Aligned_cols=39 Identities=23% Similarity=0.516 Sum_probs=25.6
Q ss_pred CCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceeee
Q 046214 19 APGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLVV 65 (66)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (66)
-|-.|+.||-...-. +.+. ......+.|.|+.|++.+..
T Consensus 13 k~~~C~~C~k~F~~~---~~l~-----~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDL---EANQ-----LFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp SEEECSSSCCEEEHH---HHHH-----HEETTTTEEBCSSSCCBCEE
T ss_pred CCccCCCCCchhccH---HHhH-----hhcCCCCCEECCCCCCcccc
Confidence 356799999765432 1221 33445688999999987653
No 20
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=75.03 E-value=0.74 Score=19.46 Aligned_cols=13 Identities=31% Similarity=1.032 Sum_probs=9.3
Q ss_pred cEEEeecccceee
Q 046214 52 RKFYCTVCARRLV 64 (66)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (66)
+.|.|..||+...
T Consensus 1 kp~~C~~C~k~f~ 13 (26)
T 2lvu_A 1 KPYVCERCGKRFV 13 (26)
Confidence 4578888887654
No 21
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=72.51 E-value=1.5 Score=31.85 Aligned_cols=29 Identities=17% Similarity=0.646 Sum_probs=20.3
Q ss_pred cCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccc
Q 046214 22 ACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCAR 61 (66)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r 61 (66)
.||+||..+.-..+-. .....|+|+.|.+
T Consensus 253 pC~~CGt~I~~~~~g~-----------~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGE-----------NSRMTYFCPHCQK 281 (287)
T ss_dssp BCTTTCCBCEEECSST-----------TCCCEEECTTTSC
T ss_pred CCCCCCCEEEEEEecC-----------CCCCEEECCCccc
Confidence 6999999998776641 1255677777754
No 22
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=72.47 E-value=2.4 Score=27.07 Aligned_cols=29 Identities=31% Similarity=0.646 Sum_probs=16.4
Q ss_pred EecCcceeeeeccCCCcCCCCCCceEEEE
Q 046214 6 VCDEDERVLGTQTAPGACPFCGGMIRAMD 34 (66)
Q Consensus 6 vcde~~kv~~~~~ApG~Cp~CGG~v~a~D 34 (66)
.|..=+++-........||.||+.+.-.+
T Consensus 134 ~C~~Cg~~~~~~~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 134 VCIGCGRKFSTLPPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp EESSSCCEESSCCGGGBCTTTCCBEEECC
T ss_pred ECCCCCCcccCCCCCCcCCCCCCcceeCC
Confidence 34444444433233348999999876543
No 23
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=72.46 E-value=3.6 Score=23.17 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=19.6
Q ss_pred CcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEee--cccceee
Q 046214 21 GACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCT--VCARRLV 64 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct--~C~r~L~ 64 (66)
-+||.|.|.+...+ ....|+ .|++.+-
T Consensus 11 L~CP~c~~~L~~~~-----------------~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 11 LACPACHAPLEERD-----------------AELICTGQDCGLAYP 39 (56)
T ss_dssp CCCSSSCSCEEEET-----------------TEEEECSSSCCCEEE
T ss_pred eeCCCCCCcceecC-----------------CEEEcCCcCCCcEEe
Confidence 37999999877543 556788 7877653
No 24
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=72.27 E-value=2.6 Score=22.40 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=18.3
Q ss_pred CcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 21 GACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
-.||.|||.--..|- ......|+.||..+.
T Consensus 6 ~~CP~C~~~~l~~d~--------------~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAELIYDP--------------ERGEIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCCEEEET--------------TTTEEEESSSCCBCC
T ss_pred EeCcCCCCcceEEcC--------------CCCeEECcccCCccc
Confidence 369999993222332 334677788876553
No 25
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=71.49 E-value=1.4 Score=18.60 Aligned_cols=13 Identities=23% Similarity=0.856 Sum_probs=9.6
Q ss_pred cEEEeecccceee
Q 046214 52 RKFYCTVCARRLV 64 (66)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (66)
+.|.|..|++...
T Consensus 2 k~~~C~~C~~~f~ 14 (30)
T 2m0d_A 2 KPYQCDYCGRSFS 14 (30)
T ss_dssp CCEECTTTCCEES
T ss_pred cCccCCCCCcccC
Confidence 4688888887654
No 26
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=70.55 E-value=1.5 Score=18.42 Aligned_cols=13 Identities=15% Similarity=0.664 Sum_probs=9.2
Q ss_pred cEEEeecccceee
Q 046214 52 RKFYCTVCARRLV 64 (66)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (66)
+.|.|..|++...
T Consensus 1 ~~~~C~~C~k~f~ 13 (29)
T 2m0f_A 1 GPLKCRECGKQFT 13 (29)
T ss_dssp CCEECTTTSCEES
T ss_pred CCccCCCCCCccC
Confidence 3578888887653
No 27
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=70.43 E-value=1.6 Score=19.56 Aligned_cols=14 Identities=36% Similarity=0.930 Sum_probs=11.1
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 5 ~k~~~C~~C~k~f~ 18 (35)
T 1srk_A 5 KRPFVCRICLSAFT 18 (35)
T ss_dssp CSCEECSSSCCEES
T ss_pred CcCeeCCCCCcccC
Confidence 46789999998764
No 28
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=69.80 E-value=1.3 Score=28.52 Aligned_cols=11 Identities=45% Similarity=0.709 Sum_probs=9.7
Q ss_pred CCcCCCCCCce
Q 046214 20 PGACPFCGGMI 30 (66)
Q Consensus 20 pG~Cp~CGG~v 30 (66)
+..||.||+.-
T Consensus 107 ~~~CP~Cgs~~ 117 (139)
T 3a43_A 107 FLACPKCGSHD 117 (139)
T ss_dssp GCSCSSSSCCC
T ss_pred CCcCccccCCc
Confidence 88999999983
No 29
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=69.71 E-value=1.6 Score=18.52 Aligned_cols=13 Identities=38% Similarity=1.129 Sum_probs=9.6
Q ss_pred cEEEeecccceee
Q 046214 52 RKFYCTVCARRLV 64 (66)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (66)
+.|.|..|++...
T Consensus 2 k~~~C~~C~k~f~ 14 (28)
T 2kvf_A 2 RPYSCSVCGKRFS 14 (28)
T ss_dssp CSEECSSSCCEES
T ss_pred cCccCCCCCcccC
Confidence 4588888887654
No 30
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=69.63 E-value=4.5 Score=22.12 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 20 PGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
.-.||.||.. .|.=...++|====| ...-|.|+.||-+-+
T Consensus 15 ~~~Cp~Cg~~-~~~~~q~Q~rsadep----~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGND-TAYWWEMQTRAGDEP----STIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCS-EEEEEEECCSSSSCS----SEEEEEESSSCCEEE
T ss_pred EeECCCCCCC-EEEEEEeecccCCCC----CcEEEEcCCCCCEec
Confidence 3569999984 444344454410001 113478888987643
No 31
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.61 E-value=0.72 Score=26.62 Aligned_cols=42 Identities=21% Similarity=0.403 Sum_probs=25.7
Q ss_pred cCCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceeee
Q 046214 18 TAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLVV 65 (66)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (66)
+....|+.||-.|...++-.. +--.| +..=|.|+.|++.|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a-----~~~~~-H~~CF~C~~C~~~L~~ 54 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLA-----NQQVF-HISCFRCSYCNNKLSL 54 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEEC-----SSSEE-ETTTCBCTTTCCBCCT
T ss_pred CCCCcCccCCCccCCceeEEE-----CCCEE-CCCCCeeCCCCCCCCC
Confidence 345689999999874432111 11111 3345779999988863
No 32
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=67.52 E-value=1.4 Score=24.69 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=22.9
Q ss_pred cCCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceeee
Q 046214 18 TAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLVV 65 (66)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (66)
.....|+.|+-.|...++-+. .--.| ++.=|.|+.|++.|..
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a-----~~~~~-H~~CF~C~~C~~~L~~ 46 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQC-----DGRSF-HRCCFLCMVCRKNLDS 46 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEE-----TTEEE-ESSSEECSSSCCEECS
T ss_pred CCCCcCcCcCccccCceeEEe-----CCccc-ccccCccCCCCCCCCC
Confidence 445789999998863332111 11111 2345778999888853
No 33
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.14 E-value=2.9 Score=19.24 Aligned_cols=14 Identities=21% Similarity=0.750 Sum_probs=11.2
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elm_A 7 GHLYYCSQCHYSSI 20 (37)
T ss_dssp SCEEECSSSSCEEE
T ss_pred CcCeECCCCCcccC
Confidence 46799999998764
No 34
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=66.75 E-value=1.8 Score=18.58 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=9.8
Q ss_pred cEEEeecccceee
Q 046214 52 RKFYCTVCARRLV 64 (66)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (66)
+.|.|..|++...
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvg_A 2 APYRCPLCRAGCP 14 (27)
T ss_dssp CTEEETTTTEEES
T ss_pred cCcCCCCCCcccC
Confidence 4688999988654
No 35
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=66.68 E-value=1 Score=24.18 Aligned_cols=40 Identities=20% Similarity=0.530 Sum_probs=24.6
Q ss_pred cCCCcCCCCCCceEEEEe--ceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 18 TAPGACPFCGGMIRAMDV--QSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dv--es~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
.....|+.||.+|...|. +..-+. | +..=|.|+.|++.|.
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~-~------H~~CF~C~~C~~~L~ 50 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGEL-Y------HEQCFVCAQCFQQFP 50 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEE-E------ETTTSSCTTTCCCCG
T ss_pred cCCccchhcCccccCCceEEEeCcCe-e------CcCCCcccCCCCCCC
Confidence 456689999999885431 111111 1 234456889988875
No 36
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=66.30 E-value=2 Score=19.02 Aligned_cols=14 Identities=21% Similarity=0.899 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 5 ~k~~~C~~C~k~f~ 18 (35)
T 2elx_A 5 SSGYVCALCLKKFV 18 (35)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCcchhC
Confidence 46789999988754
No 37
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=67.43 E-value=1.5 Score=18.76 Aligned_cols=13 Identities=15% Similarity=0.738 Sum_probs=8.9
Q ss_pred cEEEeecccceee
Q 046214 52 RKFYCTVCARRLV 64 (66)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (66)
+.|.|..|++...
T Consensus 1 k~~~C~~C~k~f~ 13 (29)
T 2lvt_A 1 KPCQCVMCGKAFT 13 (29)
Confidence 3578888887643
No 38
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=63.36 E-value=5.2 Score=24.63 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=8.0
Q ss_pred cCCC-cCCCCCCc
Q 046214 18 TAPG-ACPFCGGM 29 (66)
Q Consensus 18 ~ApG-~Cp~CGG~ 29 (66)
..+. .||.||+.
T Consensus 87 ~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 87 ALDYGVCEKCHSK 99 (119)
T ss_dssp CSTTCCCSSSSSC
T ss_pred CCCCCcCccccCC
Confidence 4455 77777776
No 39
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=67.07 E-value=1.5 Score=18.61 Aligned_cols=13 Identities=23% Similarity=0.887 Sum_probs=8.8
Q ss_pred cEEEeecccceee
Q 046214 52 RKFYCTVCARRLV 64 (66)
Q Consensus 52 rk~~Ct~C~r~L~ 64 (66)
+.|.|..|++...
T Consensus 2 k~~~C~~C~k~f~ 14 (30)
T 2lvr_A 2 KPYVCIHCQRQFA 14 (30)
Confidence 3577888887643
No 40
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.30 E-value=2.6 Score=19.01 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elq_A 7 GKPFKCSLCEYATR 20 (36)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCccCCCCCchhC
Confidence 46788999988764
No 41
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.29 E-value=3 Score=18.88 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=10.4
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elp_A 7 GRAMKCPYCDFYFM 20 (37)
T ss_dssp CCCEECSSSSCEEC
T ss_pred CCCeECCCCChhhc
Confidence 45688888887754
No 42
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=60.91 E-value=1.3 Score=18.74 Aligned_cols=11 Identities=45% Similarity=1.180 Sum_probs=7.3
Q ss_pred EEEeeccccee
Q 046214 53 KFYCTVCARRL 63 (66)
Q Consensus 53 k~~Ct~C~r~L 63 (66)
.|.|..|++..
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 1ard_A 2 SFVCEVCTRAF 12 (29)
T ss_dssp CCBCTTTCCBC
T ss_pred CeECCCCCccc
Confidence 46677777654
No 43
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.12 E-value=3.3 Score=18.61 Aligned_cols=14 Identities=21% Similarity=0.724 Sum_probs=10.5
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elv_A 7 GLLYDCHICERKFK 20 (36)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCccC
Confidence 46788999987654
No 44
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=59.81 E-value=3.7 Score=24.95 Aligned_cols=36 Identities=22% Similarity=0.521 Sum_probs=23.7
Q ss_pred eeeeccCCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeeccccee
Q 046214 13 VLGTQTAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRL 63 (66)
Q Consensus 13 v~~~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L 63 (66)
+.-+|.+.-.||.||+. ..-|..+. ...|..|+...
T Consensus 20 ie~~q~~~y~Cp~CG~~-~v~r~atG--------------iW~C~~Cg~~~ 55 (83)
T 1vq8_Z 20 IESEMNEDHACPNCGED-RVDRQGTG--------------IWQCSYCDYKF 55 (83)
T ss_dssp HHHHHHSCEECSSSCCE-EEEEEETT--------------EEEETTTCCEE
T ss_pred HHHhccccCcCCCCCCc-ceeccCCC--------------eEECCCCCCEe
Confidence 33567788899999974 34454443 55677777653
No 45
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=58.53 E-value=3.6 Score=19.04 Aligned_cols=14 Identities=14% Similarity=0.736 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 9 ~~~~~C~~C~k~f~ 22 (42)
T 2epc_A 9 ETPYLCGQCGKSFT 22 (42)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCcccC
Confidence 46788999988764
No 46
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.22 E-value=3.4 Score=18.38 Aligned_cols=14 Identities=14% Similarity=0.532 Sum_probs=10.5
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elt_A 7 GKPYKCPQCSYASA 20 (36)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCCCCCCCCcccC
Confidence 46788999887653
No 47
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=56.54 E-value=3.3 Score=19.10 Aligned_cols=14 Identities=29% Similarity=0.873 Sum_probs=10.5
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 4 ~k~~~C~~C~k~f~ 17 (39)
T 1njq_A 4 PRSYTCSFCKREFR 17 (39)
T ss_dssp SSSEECTTTCCEES
T ss_pred CCceECCCCCcccC
Confidence 35688999988754
No 48
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.48 E-value=4 Score=19.24 Aligned_cols=14 Identities=29% Similarity=0.785 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2yu5_A 10 ENPFKCSKCDRVFT 23 (44)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCeECCCCCchhC
Confidence 46789999988764
No 49
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=56.39 E-value=1.8 Score=18.20 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=7.6
Q ss_pred EEEeecccceee
Q 046214 53 KFYCTVCARRLV 64 (66)
Q Consensus 53 k~~Ct~C~r~L~ 64 (66)
.|.|+.|++...
T Consensus 2 ~~~C~~C~k~f~ 13 (30)
T 1klr_A 2 TYQCQYCEFRSA 13 (30)
T ss_dssp CCCCSSSSCCCS
T ss_pred CccCCCCCCccC
Confidence 466777776543
No 50
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=55.84 E-value=1.7 Score=18.08 Aligned_cols=11 Identities=18% Similarity=0.824 Sum_probs=6.5
Q ss_pred EEEeeccccee
Q 046214 53 KFYCTVCARRL 63 (66)
Q Consensus 53 k~~Ct~C~r~L 63 (66)
.|.|..|++..
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 2m0e_A 2 EHKCPHCDKKF 12 (29)
T ss_dssp CCCCSSCCCCC
T ss_pred CCcCCCCCccc
Confidence 45666666654
No 51
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=55.81 E-value=3.9 Score=18.98 Aligned_cols=14 Identities=14% Similarity=0.674 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (42)
T 2el5_A 8 ENPYECSECGKAFN 21 (42)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCccCCCcChhhC
Confidence 46788999988754
No 52
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=55.75 E-value=1.6 Score=26.14 Aligned_cols=25 Identities=28% Similarity=0.774 Sum_probs=16.7
Q ss_pred cCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccc
Q 046214 22 ACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCAR 61 (66)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r 61 (66)
.|.||||.+.. ..+|-...|..|.+
T Consensus 35 ~CaRCGg~v~l---------------r~~k~~WvC~lC~k 59 (62)
T 2a20_A 35 FCARCGGRVSL---------------RSNKVMWVCNLCRK 59 (62)
T ss_dssp ECTTSEEEEES---------------STTCEEEEEHHHHH
T ss_pred eecccCCEeee---------------cCCeEEEEehhhhh
Confidence 58888887654 34666667776654
No 53
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.73 E-value=2.1 Score=23.63 Aligned_cols=41 Identities=22% Similarity=0.414 Sum_probs=23.8
Q ss_pred cCCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 18 TAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
..+..|+.|+-.|...+.-.. +--.| ++.=|.|+.|++.|.
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a-----~~~~~-H~~CF~C~~C~~~L~ 47 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSS-----LGKDW-HKFCLKCERCSKTLT 47 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEE-----TTEEE-ETTTCBCSSSCCBCC
T ss_pred CCCCCCcCCCCEeECCeEEEE-----CCeEe-eCCCCCCCCCCCccC
Confidence 456789999998874322111 11111 234467888888875
No 54
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=55.22 E-value=10 Score=25.00 Aligned_cols=12 Identities=50% Similarity=1.173 Sum_probs=8.0
Q ss_pred cCCCcCCCCCCc
Q 046214 18 TAPGACPFCGGM 29 (66)
Q Consensus 18 ~ApG~Cp~CGG~ 29 (66)
.+|..||-||.+
T Consensus 151 ~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 151 EAPEYCPVCGAP 162 (170)
T ss_dssp CCCSBCTTTCCB
T ss_pred CCCCCCCCCCCC
Confidence 466677777754
No 55
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.13 E-value=4.2 Score=18.22 Aligned_cols=14 Identities=21% Similarity=0.645 Sum_probs=10.2
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2els_A 7 GKIFTCEYCNKVFK 20 (36)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCEECCCCCceeC
Confidence 46788888887653
No 56
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.26 E-value=4.2 Score=19.17 Aligned_cols=14 Identities=14% Similarity=0.764 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2emb_A 10 RKRYECSKCQATFN 23 (44)
T ss_dssp CSSEECTTTCCEES
T ss_pred CCCeECCCCCCccC
Confidence 46788998988764
No 57
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=54.19 E-value=7.5 Score=29.57 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=26.5
Q ss_pred CCCcCCCCCCceEEEEeceeeEEE--EEeeeeeec-cEEEeeccccee
Q 046214 19 APGACPFCGGMIRAMDVQSEWRFC--FLPLYFKTK-RKFYCTVCARRL 63 (66)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfC--flP~~~k~k-rk~~Ct~C~r~L 63 (66)
.++.||.||..-. +|+. =||.+.+.= -.|.|..||-+-
T Consensus 11 ~~s~Cp~C~~~g~-------t~~~~~~IP~F~eVii~Sf~C~~CGyrn 51 (404)
T 2qkd_A 11 IESLCMNCYRNGT-------TRLLLTKIPFFREIIVSSFSCEHCGWNN 51 (404)
T ss_dssp CEEECTTTSSEEE-------EEEEEEEETTTEEEEEEEEECTTTCCEE
T ss_pred ccccCCCCCCCce-------EEEEEEcCCCCceEEEEEEECCCCCCch
Confidence 3567999996543 2333 379776655 789999999763
No 58
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.04 E-value=4.3 Score=19.25 Aligned_cols=14 Identities=14% Similarity=0.833 Sum_probs=10.9
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (44)
T 2epv_A 10 EKPYECNECGKAFI 23 (44)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCcccC
Confidence 46789999988754
No 59
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.97 E-value=0.59 Score=26.17 Aligned_cols=40 Identities=18% Similarity=0.501 Sum_probs=27.5
Q ss_pred ccCCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeeccccee
Q 046214 17 QTAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRL 63 (66)
Q Consensus 17 ~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L 63 (66)
..-|-.|++||-.+...|++....-| -.+.|.|..|++..
T Consensus 14 ~~r~~~C~~C~~~~~~~~L~~H~~~c-------~~~~~~C~~C~~~~ 53 (75)
T 2d9k_A 14 PLRLAVCQHCDLELSILKLKEHEDYC-------GARTELCGNCGRNV 53 (75)
T ss_dssp CCCCEECSSSCCEECHHHHHHHHHHH-------HHCEEECSSSCCEE
T ss_pred CCcccCCcccChHhhHHHHHHHHhHc-------CCCceEcccCCCcC
Confidence 34567899998888777766554333 25678888888764
No 60
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=53.97 E-value=4.1 Score=27.36 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=10.8
Q ss_pred eeccCCCcCCCCCCc
Q 046214 15 GTQTAPGACPFCGGM 29 (66)
Q Consensus 15 ~~~~ApG~Cp~CGG~ 29 (66)
+.-.-.+.||.|||.
T Consensus 9 ~~~~~~~~CP~Cg~~ 23 (255)
T 1nui_A 9 SVFLYHIPCDNCGSS 23 (255)
T ss_dssp -CEEEEECCSSSCCS
T ss_pred cceecCCcCCCCCCC
Confidence 444447899999996
No 61
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.82 E-value=4.7 Score=19.08 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2epw_A 10 EKPCKCTECGKAFC 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCCCCccC
Confidence 46788999988754
No 62
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.11 E-value=5 Score=19.07 Aligned_cols=14 Identities=21% Similarity=0.933 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2emi_A 10 ERHYECSECGKAFI 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCCCCCCCCcccC
Confidence 46788999988654
No 63
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.91 E-value=2.9 Score=18.86 Aligned_cols=14 Identities=29% Similarity=0.878 Sum_probs=10.2
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elo_A 7 GRSYSCPVCEKSFS 20 (37)
T ss_dssp CCCCEETTTTEECS
T ss_pred CCCcCCCCCCCccC
Confidence 45688888887653
No 64
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.61 E-value=5.1 Score=19.09 Aligned_cols=14 Identities=21% Similarity=0.745 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eoy_A 10 EKCFKCNKCEKTFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCEECcCCCCcCC
Confidence 46788999988754
No 65
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.53 E-value=4.8 Score=19.06 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytf_A 10 EKPFECSECQKAFN 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCcCCCCCCcccC
Confidence 46789999988754
No 66
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.52 E-value=4.9 Score=19.08 Aligned_cols=14 Identities=14% Similarity=0.823 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em7_A 10 EKPYKCEECGKGFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCccCCCccchhC
Confidence 46789999988754
No 67
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.39 E-value=4.9 Score=19.01 Aligned_cols=14 Identities=14% Similarity=0.726 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eow_A 10 EKPYKCNECGKAFR 23 (46)
T ss_dssp CCCEECTTSCCEES
T ss_pred CCCeeccccCChhc
Confidence 46788999988754
No 68
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=52.28 E-value=2 Score=18.30 Aligned_cols=11 Identities=27% Similarity=0.969 Sum_probs=6.8
Q ss_pred EEEeeccccee
Q 046214 53 KFYCTVCARRL 63 (66)
Q Consensus 53 k~~Ct~C~r~L 63 (66)
.|.|+.|++..
T Consensus 2 ~~~C~~C~k~f 12 (30)
T 1paa_A 2 AYACGLCNRAF 12 (30)
T ss_dssp CSBCTTTCCBC
T ss_pred CcCCcccCccc
Confidence 45677777654
No 69
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=52.24 E-value=5.6 Score=24.69 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=18.1
Q ss_pred CcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccce
Q 046214 21 GACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARR 62 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~ 62 (66)
--||.||..+..-.-+. ..+-+|.|..|+-.
T Consensus 5 ~FCp~Cgn~L~~~~~~~-----------~~~~~~~C~~C~y~ 35 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKV-----------DRVLRLACRNCDYS 35 (113)
T ss_dssp CCCSSSCCCCEECCCTT-----------TCCCCEECSSSCCE
T ss_pred eeCcCCCCEeeEcccCC-----------CCeeEEECCCCCCe
Confidence 35888888776543321 12346777777643
No 70
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.12 E-value=5.2 Score=19.05 Aligned_cols=14 Identities=21% Similarity=0.861 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2ytp_A 10 ERHYECSECGKAFA 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCcCCcccC
Confidence 46789999988754
No 71
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.02 E-value=4.9 Score=19.01 Aligned_cols=14 Identities=14% Similarity=0.890 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yts_A 10 EKPYICNECGKSFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCEECCCCChhhC
Confidence 56789999988754
No 72
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.95 E-value=5.4 Score=18.74 Aligned_cols=14 Identities=14% Similarity=0.781 Sum_probs=10.9
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (44)
T 2eox_A 10 SKSYNCNECGKAFT 23 (44)
T ss_dssp CCCEEETTTTEEES
T ss_pred CCCeECcccCcccC
Confidence 46789999998764
No 73
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.93 E-value=4.9 Score=19.15 Aligned_cols=14 Identities=29% Similarity=0.985 Sum_probs=10.9
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eoz_A 10 EKPYSCNVCGKAFV 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeECcccChhhC
Confidence 46789999998754
No 74
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.92 E-value=4.9 Score=19.08 Aligned_cols=14 Identities=21% Similarity=0.769 Sum_probs=10.9
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2enc_A 10 EKPFKCEECGKGFY 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCcCCCCCCCcCC
Confidence 46789999988754
No 75
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.90 E-value=4.8 Score=18.78 Aligned_cols=14 Identities=14% Similarity=0.690 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2eof_A 10 EKPYECNECQKAFN 23 (44)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCeECCCCCcccC
Confidence 46788999988754
No 76
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=51.72 E-value=4.7 Score=19.94 Aligned_cols=14 Identities=21% Similarity=0.899 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 5 ~kp~~C~~C~k~F~ 18 (48)
T 3iuf_A 5 DKPYACDICGKRYK 18 (48)
T ss_dssp TSCEECTTTCCEES
T ss_pred CcCEECCCcCcccC
Confidence 46789999998753
No 77
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.40 E-value=5.5 Score=18.98 Aligned_cols=14 Identities=14% Similarity=0.774 Sum_probs=10.9
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yto_A 10 EKPYKCSDCGKAFT 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCEECcccCCccC
Confidence 56789999988754
No 78
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.34 E-value=1.8 Score=23.72 Aligned_cols=44 Identities=16% Similarity=0.388 Sum_probs=25.5
Q ss_pred eeccCCCcCCCCCCceEEEEec-eeeEEEEEeeeeeeccEEEeecccceee
Q 046214 15 GTQTAPGACPFCGGMIRAMDVQ-SEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 15 ~~~~ApG~Cp~CGG~v~a~Dve-s~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
........|+.||..+...+.- ...- -.| +..=|.|+.|++.|.
T Consensus 6 ~~~~~~~~C~~C~~~I~~~~~~~~a~~-----~~~-H~~CF~C~~C~~~L~ 50 (77)
T 1g47_A 6 ANALASATCERCKGGFAPAEKIVNSNG-----ELY-HEQCFVCAQCFQQFP 50 (77)
T ss_dssp CSCCCCCBCSSSCCBCCSTTTCEEETT-----EEE-CTTTCCCTTTCCCCG
T ss_pred ccCCCCCCchhcCCccCCCceEEEeCc-----cEe-ccccCeECCCCCCCC
Confidence 4456678999999988643211 0000 011 334467888888775
No 79
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.13 E-value=5.3 Score=19.04 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eoo_A 10 ERPYGCNECGKNFG 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCEEccccCcccC
Confidence 46788999988754
No 80
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.08 E-value=5.2 Score=19.00 Aligned_cols=14 Identities=21% Similarity=0.885 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eml_A 10 EKPYECSVCGKAFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCcCCccC
Confidence 46788999988754
No 81
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.07 E-value=5.2 Score=18.97 Aligned_cols=14 Identities=14% Similarity=0.674 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eq0_A 10 EKPYKCHECGKVFR 23 (46)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCeECCCCCchhC
Confidence 46788999988754
No 82
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.05 E-value=4.9 Score=18.62 Aligned_cols=14 Identities=29% Similarity=0.933 Sum_probs=10.4
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2en2_A 9 EKPYKCETCGARFV 22 (42)
T ss_dssp SCSEECTTTCCEES
T ss_pred CCCEeCCCcChhhC
Confidence 46788888887754
No 83
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.91 E-value=5.2 Score=18.99 Aligned_cols=14 Identities=21% Similarity=0.691 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ytg_A 10 EKPFKCGECGKSYN 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCeECCCCCcccC
Confidence 46788998888754
No 84
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.86 E-value=5.2 Score=19.05 Aligned_cols=14 Identities=21% Similarity=0.747 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em4_A 10 QRPYECIECGKAFK 23 (46)
T ss_dssp SSSEECSSSCCEES
T ss_pred CcCcCCCCCCCccC
Confidence 46788999988754
No 85
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.86 E-value=4.9 Score=19.00 Aligned_cols=14 Identities=14% Similarity=0.850 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2eor_A 10 EKPYNCEECGKAFI 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CcCccCCCCCCCcC
Confidence 46788999988754
No 86
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.64 E-value=5 Score=19.04 Aligned_cols=14 Identities=14% Similarity=0.809 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytj_A 10 EKPYICAECGKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCChhhC
Confidence 46788999988754
No 87
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.59 E-value=5.3 Score=18.95 Aligned_cols=14 Identities=14% Similarity=0.693 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ene_A 10 EKPYKCNECGKVFR 23 (46)
T ss_dssp SSSEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 56789999988754
No 88
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.52 E-value=5.4 Score=18.92 Aligned_cols=15 Identities=27% Similarity=0.740 Sum_probs=11.4
Q ss_pred eccEEEeecccceee
Q 046214 50 TKRKFYCTVCARRLV 64 (66)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (66)
..+.|.|..|++...
T Consensus 9 ~~k~~~C~~C~k~F~ 23 (45)
T 2epu_A 9 GQKPFECTHCGKSFR 23 (45)
T ss_dssp SCCSEEETTTTEEES
T ss_pred CCcCccCCCCCCccC
Confidence 356799999998754
No 89
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.40 E-value=5.8 Score=18.62 Aligned_cols=14 Identities=21% Similarity=0.807 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (44)
T 2emx_A 8 EKPFGCSCCEKAFS 21 (44)
T ss_dssp CCCEECSSSSCEES
T ss_pred CcCccCCCCCcccC
Confidence 46788999988754
No 90
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=50.38 E-value=8.3 Score=21.78 Aligned_cols=9 Identities=44% Similarity=1.124 Sum_probs=7.6
Q ss_pred cCCCCCCce
Q 046214 22 ACPFCGGMI 30 (66)
Q Consensus 22 ~Cp~CGG~v 30 (66)
.||-||.+-
T Consensus 38 ~CP~Cg~~K 46 (54)
T 4rxn_A 38 VCPLCGVGK 46 (54)
T ss_dssp BCTTTCCBG
T ss_pred cCcCCCCcH
Confidence 899999763
No 91
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.29 E-value=5.7 Score=18.82 Aligned_cols=14 Identities=21% Similarity=0.712 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2en3_A 10 EKPFQCKECGMNFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCcccChhhC
Confidence 46788999988754
No 92
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.24 E-value=5.1 Score=18.93 Aligned_cols=14 Identities=14% Similarity=0.726 Sum_probs=10.5
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eme_A 10 EKPYVCDYCGKAFG 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCChhhC
Confidence 46788999988754
No 93
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.12 E-value=5.5 Score=18.98 Aligned_cols=14 Identities=14% Similarity=0.664 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em8_A 10 EKPYKCVECGKGYK 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECcccCchhC
Confidence 46788999988754
No 94
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.05 E-value=5.9 Score=18.76 Aligned_cols=14 Identities=14% Similarity=0.660 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emy_A 10 ENPYECHECGKAFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CcCcCCCCCCcccC
Confidence 46788999988754
No 95
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.01 E-value=5.7 Score=18.83 Aligned_cols=14 Identities=14% Similarity=0.655 Sum_probs=10.9
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ysp_A 10 EKPYKCEKCGKGYN 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeECCCCCCccC
Confidence 46789999998754
No 96
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.00 E-value=5.2 Score=23.91 Aligned_cols=12 Identities=42% Similarity=1.179 Sum_probs=10.0
Q ss_pred CCcCCCCCCceE
Q 046214 20 PGACPFCGGMIR 31 (66)
Q Consensus 20 pG~Cp~CGG~v~ 31 (66)
.|.||-||..+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 678999998765
No 97
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.95 E-value=5.8 Score=18.79 Aligned_cols=14 Identities=14% Similarity=0.740 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yu8_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CSSEECSSSCCEES
T ss_pred CCCeECCcCCchhC
Confidence 56788999988754
No 98
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.84 E-value=2.4 Score=18.93 Aligned_cols=13 Identities=15% Similarity=0.874 Sum_probs=8.9
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 7 ~~~~~C~~C~k~f 19 (36)
T 2elr_A 7 GKTHLCDMCGKKF 19 (36)
T ss_dssp CSSCBCTTTCCBC
T ss_pred CCCeecCcCCCCc
Confidence 4567777777764
No 99
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.80 E-value=6 Score=18.66 Aligned_cols=14 Identities=14% Similarity=0.745 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2yrj_A 10 EKPYRCGECGKAFA 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCccC
Confidence 56788999988754
No 100
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=49.78 E-value=16 Score=24.94 Aligned_cols=41 Identities=27% Similarity=0.492 Sum_probs=26.5
Q ss_pred EEecCcceeeeeccCCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeeccccee
Q 046214 5 CVCDEDERVLGTQTAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRL 63 (66)
Q Consensus 5 ~vcde~~kv~~~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L 63 (66)
|=+|++++|.... -.||+||-++..+. +..+++|-.|+-.+
T Consensus 101 y~Vd~~Gkv~~~~---~~Cp~Cg~g~fma~---------------h~dR~~CGkC~~t~ 141 (189)
T 2xzm_9 101 YKLENNGKVSLQQ---KGCPKCGPGIFMAK---------------HYDRHYCGKCHLTL 141 (189)
T ss_dssp EEEETTTEEEECS---EECSTTCSSCEEEE---------------CSSCEEETTTCCCB
T ss_pred EEECCCceEEEcc---ccCCccCCCccccC---------------ccCCCccCCceeEE
Confidence 4467788887655 47999997754433 23356777776543
No 101
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.71 E-value=5.6 Score=18.86 Aligned_cols=14 Identities=14% Similarity=0.783 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep3_A 10 EKPYRCAECGKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 46788999988754
No 102
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=49.59 E-value=5.6 Score=18.93 Aligned_cols=14 Identities=21% Similarity=0.793 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emj_A 10 EKPFECAECGKSFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCEECCCCCcccC
Confidence 46788999988754
No 103
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.52 E-value=5.7 Score=18.92 Aligned_cols=14 Identities=21% Similarity=0.762 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em2_A 10 EKPFKCKECGKAFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCEECCcCCchhC
Confidence 46789999988754
No 104
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.32 E-value=5.9 Score=18.30 Aligned_cols=14 Identities=21% Similarity=0.738 Sum_probs=10.3
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (41)
T 2ept_A 8 QRVYECQECGKSFR 21 (41)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCCcC
Confidence 46788888887653
No 105
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=49.13 E-value=5.8 Score=18.73 Aligned_cols=14 Identities=21% Similarity=0.724 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2el4_A 10 VKPYGCSQCAKTFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCceECCCCCchhC
Confidence 46788999988754
No 106
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=49.13 E-value=2.5 Score=23.29 Aligned_cols=10 Identities=30% Similarity=0.840 Sum_probs=6.5
Q ss_pred cCCCCCCceE
Q 046214 22 ACPFCGGMIR 31 (66)
Q Consensus 22 ~Cp~CGG~v~ 31 (66)
.|+.||..|.
T Consensus 2 ~C~~C~~~I~ 11 (76)
T 1iml_A 2 KCPKCDKEVY 11 (76)
T ss_dssp BCTTTSSBCC
T ss_pred cCCCCCCEEE
Confidence 4677777665
No 107
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=49.04 E-value=6.3 Score=18.67 Aligned_cols=14 Identities=14% Similarity=0.795 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ema_A 10 EKRYKCNECGKVFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CcCcCCCCCcchhC
Confidence 46788999988754
No 108
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.97 E-value=5.9 Score=18.71 Aligned_cols=14 Identities=21% Similarity=0.781 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emm_A 10 ERPHKCNECGKSFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCCChhhC
Confidence 46788999988754
No 109
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.94 E-value=6 Score=18.74 Aligned_cols=14 Identities=14% Similarity=0.726 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emp_A 10 VKPYMCNECGKAFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCchhC
Confidence 46788999988754
No 110
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.80 E-value=6.4 Score=18.63 Aligned_cols=15 Identities=13% Similarity=0.642 Sum_probs=11.3
Q ss_pred eccEEEeecccceee
Q 046214 50 TKRKFYCTVCARRLV 64 (66)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (66)
..+.|.|..|++...
T Consensus 9 ~~~~~~C~~C~k~f~ 23 (46)
T 2en6_A 9 GEKPYGCNECGKTFS 23 (46)
T ss_dssp SSCCEEETTTTEEES
T ss_pred CCcCeECCCCCcccC
Confidence 356789999998754
No 111
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.75 E-value=5.6 Score=18.94 Aligned_cols=14 Identities=21% Similarity=0.669 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2em5_A 10 TKSHQCHECGRGFT 23 (46)
T ss_dssp SCSEECSSSCCEES
T ss_pred CCCeECCcCCCccC
Confidence 46788999988754
No 112
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.68 E-value=5.9 Score=18.76 Aligned_cols=14 Identities=14% Similarity=0.911 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep2_A 10 EKPYECSICGKSFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCcCCCCCCcccC
Confidence 46788999988754
No 113
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.64 E-value=5.3 Score=18.96 Aligned_cols=14 Identities=36% Similarity=1.027 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emh_A 10 ERPYICTVCGKAFT 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCcCCCCCCchhC
Confidence 46788999988754
No 114
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=48.60 E-value=5.6 Score=18.93 Aligned_cols=14 Identities=14% Similarity=0.655 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2el6_A 10 VNPYKCSQCEKSFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCeECCCCCcccC
Confidence 46789999988754
No 115
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.56 E-value=6.7 Score=18.65 Aligned_cols=14 Identities=29% Similarity=0.826 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emf_A 10 GKHFECTECGKAFT 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 46788999988754
No 116
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=48.17 E-value=6.1 Score=18.64 Aligned_cols=14 Identities=14% Similarity=0.743 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em9_A 10 EKPYNCKECGKSFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCccccccC
Confidence 46788999988654
No 117
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=47.70 E-value=15 Score=22.40 Aligned_cols=36 Identities=22% Similarity=0.509 Sum_probs=24.3
Q ss_pred CCCcCCCCCCc-eEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 19 APGACPFCGGM-IRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 19 ApG~Cp~CGG~-v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
.-=.||.||.. .+.+.++... ..-...|..|+....
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~----------~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRAR----------NTGVISCTVCLEEFQ 58 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTT----------TEEEEEESSSCCEEE
T ss_pred CeEcCCCCCCCCeEEEEEEccC----------CEEEEEcccCCCeEE
Confidence 45679999998 5555554321 134678999987664
No 118
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.64 E-value=6.3 Score=18.67 Aligned_cols=14 Identities=21% Similarity=0.890 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2em3_A 10 EKPYECKVCSKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCcccC
Confidence 46788999988754
No 119
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=47.46 E-value=10 Score=19.15 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=6.4
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 8 ~k~~~C~~C~k~f 20 (66)
T 2drp_A 8 EHTYRCKVCSRVY 20 (66)
T ss_dssp TTEEECTTTCCEE
T ss_pred CcceECCCCcchh
Confidence 3445555555443
No 120
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.31 E-value=2.7 Score=22.69 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=21.6
Q ss_pred CCcCCCCCCceEEEE-eceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 20 PGACPFCGGMIRAMD-VQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 20 pG~Cp~CGG~v~a~D-ves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
...|+.|+..|...| +-+.. --.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~-----~~~~-H~~CF~C~~C~~~L~ 44 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYK-----GSSW-HETCFICHRCQQPIG 44 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEET-----TEEE-ETTTTCCSSSCCCCC
T ss_pred CCCCccCCCcccCCceEEEEC-----cCee-cccCCcccccCCccC
Confidence 358999999887543 11110 0111 234466788877765
No 121
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=47.16 E-value=7.7 Score=16.00 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=9.5
Q ss_pred cEEEee--cccceee
Q 046214 52 RKFYCT--VCARRLV 64 (66)
Q Consensus 52 rk~~Ct--~C~r~L~ 64 (66)
+.|.|+ .|++...
T Consensus 1 k~~~C~~~~C~k~f~ 15 (29)
T 2ab3_A 1 MVYVCHFENCGRSFN 15 (29)
T ss_dssp CCEEECSTTTCEEES
T ss_pred CCCCCcCCcCcCccC
Confidence 357888 8988654
No 122
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=47.03 E-value=6.6 Score=19.00 Aligned_cols=15 Identities=20% Similarity=0.758 Sum_probs=10.8
Q ss_pred eccEEEeecccceee
Q 046214 50 TKRKFYCTVCARRLV 64 (66)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (66)
..+.|.|..|++.+.
T Consensus 9 ~~k~~~C~~C~k~f~ 23 (48)
T 2epr_A 9 TRKQVACEICGKIFR 23 (48)
T ss_dssp CCCSEEETTTTEEES
T ss_pred CCcCeeCCCCCcccC
Confidence 456788888887654
No 123
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.98 E-value=6.6 Score=18.60 Aligned_cols=14 Identities=14% Similarity=0.750 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytd_A 10 EKPYKCSECGKAFH 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCCeeC
Confidence 46788999988754
No 124
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.68 E-value=6.4 Score=18.65 Aligned_cols=14 Identities=14% Similarity=0.565 Sum_probs=10.5
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2yso_A 10 EKSHQCRECGEIFF 23 (46)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCEEccccChhhC
Confidence 46788888888754
No 125
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=46.19 E-value=13 Score=23.37 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=9.4
Q ss_pred cCCCCCCceEEEE
Q 046214 22 ACPFCGGMIRAMD 34 (66)
Q Consensus 22 ~Cp~CGG~v~a~D 34 (66)
-||.||..+....
T Consensus 5 ~C~~CG~~~~~~~ 17 (189)
T 3cng_A 5 FCSQCGGEVILRI 17 (189)
T ss_dssp BCTTTCCBCEEEC
T ss_pred cCchhCCcccccc
Confidence 5888888877543
No 126
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=46.18 E-value=3 Score=18.88 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=7.5
Q ss_pred EEEeeccccee
Q 046214 53 KFYCTVCARRL 63 (66)
Q Consensus 53 k~~Ct~C~r~L 63 (66)
.|.|..|++..
T Consensus 2 p~~C~~C~k~F 12 (33)
T 1rim_A 2 KFACPECPKRF 12 (33)
T ss_dssp CCCCSSSCCCC
T ss_pred cccCCCCCchh
Confidence 46777777654
No 127
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.01 E-value=7 Score=18.50 Aligned_cols=14 Identities=29% Similarity=0.930 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2en1_A 10 EKPFKCEECGKRFT 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeeCCCCCcccC
Confidence 46789999988754
No 128
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.87 E-value=6.5 Score=18.53 Aligned_cols=14 Identities=14% Similarity=0.681 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2en8_A 10 EKSHTCDECGKNFC 23 (46)
T ss_dssp CSSEECTTTCCEES
T ss_pred CCCeECCCcCcccC
Confidence 56788999988754
No 129
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.68 E-value=7.1 Score=18.47 Aligned_cols=14 Identities=14% Similarity=0.740 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ytk_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp SCSEECSSSCCEES
T ss_pred CCCEeCCcCCCccC
Confidence 46788998888754
No 130
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.62 E-value=4.1 Score=19.12 Aligned_cols=14 Identities=14% Similarity=0.622 Sum_probs=10.1
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2eoj_A 10 ENPYECCECGKVFS 23 (44)
T ss_dssp CCSCEETTTTEECS
T ss_pred CcCeeCCCCCCccC
Confidence 45688888887653
No 131
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=44.94 E-value=6.6 Score=22.36 Aligned_cols=12 Identities=58% Similarity=1.445 Sum_probs=8.8
Q ss_pred CC-cCCCCCCceE
Q 046214 20 PG-ACPFCGGMIR 31 (66)
Q Consensus 20 pG-~Cp~CGG~v~ 31 (66)
|| -|||||=.|.
T Consensus 22 P~IrCpyCGyrii 34 (48)
T 4ayb_P 22 PGVRCPYCGYKII 34 (48)
T ss_dssp SSSCCTTTCCSCE
T ss_pred CCcccCccCcEEE
Confidence 44 5999997654
No 132
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=44.48 E-value=3.2 Score=18.71 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=7.6
Q ss_pred cEEEeeccccee
Q 046214 52 RKFYCTVCARRL 63 (66)
Q Consensus 52 rk~~Ct~C~r~L 63 (66)
+.|.|..|++..
T Consensus 10 k~~~C~~C~k~f 21 (37)
T 1p7a_A 10 KPFQCPDCDRSF 21 (37)
T ss_dssp SSBCCTTTCCCB
T ss_pred CCccCCCCCccc
Confidence 456677776654
No 133
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=44.05 E-value=3.9 Score=16.90 Aligned_cols=10 Identities=30% Similarity=1.105 Sum_probs=6.5
Q ss_pred EEeeccccee
Q 046214 54 FYCTVCARRL 63 (66)
Q Consensus 54 ~~Ct~C~r~L 63 (66)
|.|..|++..
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 5677777654
No 134
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=43.45 E-value=7 Score=21.33 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=22.8
Q ss_pred CCcCCCCCCceEE----EEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 20 PGACPFCGGMIRA----MDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 20 pG~Cp~CGG~v~a----~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
...|+.||-+|.. ..+-+. +--.| +..=|.|+.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a-----~~~~~-H~~CF~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY-----EGQSW-HDYCFHCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE-----TTEEE-ETTTCBCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCceeEEE-----Cccee-CcccCEehhcCCCCC
Confidence 4689999998873 111111 11112 234577999988875
No 135
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=43.38 E-value=2.8 Score=25.18 Aligned_cols=38 Identities=24% Similarity=0.532 Sum_probs=22.2
Q ss_pred CcCCCCCCceEEEE-eceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 21 GACPFCGGMIRAMD-VQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 21 G~Cp~CGG~v~a~D-ves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
+.|..|+.++...| +-+...--| +..=|.|+.|++.|.
T Consensus 67 ~~C~~C~~~I~~~e~~~~a~~~~~------H~~CF~C~~C~~~L~ 105 (131)
T 2xjy_A 67 GLCASCDKRIRAYEMTMRVKDKVY------HLECFKCAACQKHFC 105 (131)
T ss_dssp EECTTTCCEECTTSEEEEETTEEE------EGGGCBCTTTCCBCC
T ss_pred cChhhcCCccCccceeEeeCCceE------CccCcccCCCCCCCC
Confidence 48999999996533 111111111 234467888888873
No 136
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=42.86 E-value=16 Score=25.37 Aligned_cols=15 Identities=20% Similarity=0.578 Sum_probs=11.3
Q ss_pred CCCcCCCCCCceEEE
Q 046214 19 APGACPFCGGMIRAM 33 (66)
Q Consensus 19 ApG~Cp~CGG~v~a~ 33 (66)
...-||.||.+....
T Consensus 106 ~~~fC~~CG~~~~~~ 120 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPS 120 (269)
T ss_dssp TTSBCTTTCCBEEEC
T ss_pred cCCccccCCCcCccC
Confidence 356799999988653
No 137
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.85 E-value=8.3 Score=18.21 Aligned_cols=14 Identities=21% Similarity=0.819 Sum_probs=10.5
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ep0_A 10 EKPYKCDVCHKSFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCcccCcccC
Confidence 46788999988754
No 138
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.73 E-value=4 Score=22.97 Aligned_cols=42 Identities=17% Similarity=0.364 Sum_probs=25.6
Q ss_pred eeeccCCCcCCCCCCceEEEEeceeeEEEEEeeeeee--ccEEEeecccceee
Q 046214 14 LGTQTAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKT--KRKFYCTVCARRLV 64 (66)
Q Consensus 14 ~~~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~--krk~~Ct~C~r~L~ 64 (66)
.........|+.||..|...-|+ .--+. ..=|.|+.|++.|.
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~~v~---------a~~~~~H~~CF~C~~C~~~L~ 52 (79)
T 2cor_A 9 KARGLGKYICQKCHAIIDEQPLI---------FKNDPYHPDHFNCANCGKELT 52 (79)
T ss_dssp CCCCCCCCBCTTTCCBCCSCCCC---------CSSSCCCTTTSBCSSSCCBCC
T ss_pred hhhccCCCCCccCCCEecceEEE---------ECcceeCCCCCEeCCCCCccC
Confidence 34455567899999988821111 11222 23478888888875
No 139
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.46 E-value=4.4 Score=18.87 Aligned_cols=14 Identities=21% Similarity=0.864 Sum_probs=9.4
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2eos_A 9 EKPYPCEICGTRFR 22 (42)
T ss_dssp SCCBCCSSSCCCBS
T ss_pred CCCEECCCCCCccC
Confidence 35677888877643
No 140
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=41.96 E-value=8.7 Score=19.07 Aligned_cols=14 Identities=14% Similarity=0.479 Sum_probs=10.3
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 22 ~k~~~C~~C~k~f~ 35 (54)
T 1yui_A 22 EQPATCPICYAVIR 35 (54)
T ss_dssp SCCEECTTTCCEES
T ss_pred CCCccCCCCCcccC
Confidence 45688888887654
No 141
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=41.87 E-value=4.6 Score=19.28 Aligned_cols=14 Identities=21% Similarity=0.774 Sum_probs=9.4
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ely_A 10 EKPFKCVECGKGFS 23 (46)
T ss_dssp CCSBCCSSSCCCBS
T ss_pred CCCcccCccCcccC
Confidence 45677888877653
No 142
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=41.82 E-value=25 Score=23.20 Aligned_cols=12 Identities=42% Similarity=0.885 Sum_probs=7.4
Q ss_pred cCCCcCCCCCCc
Q 046214 18 TAPGACPFCGGM 29 (66)
Q Consensus 18 ~ApG~Cp~CGG~ 29 (66)
.+|..||-||.+
T Consensus 169 ~~p~~CP~C~~~ 180 (191)
T 1lko_A 169 GAPELCPACAHP 180 (191)
T ss_dssp ECCSBCTTTCCB
T ss_pred CCCCCCCCCcCC
Confidence 455566666664
No 143
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=41.69 E-value=4 Score=20.10 Aligned_cols=15 Identities=20% Similarity=0.645 Sum_probs=11.9
Q ss_pred CCcCCCCCCceEEEE
Q 046214 20 PGACPFCGGMIRAMD 34 (66)
Q Consensus 20 pG~Cp~CGG~v~a~D 34 (66)
+..||.||-.|.+++
T Consensus 3 ~~~C~~C~k~Vy~~E 17 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE 17 (31)
T ss_dssp CCBCSSSCSBCCGGG
T ss_pred CCcCCccCCEEecce
Confidence 468999999987663
No 144
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.55 E-value=14 Score=18.54 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=11.3
Q ss_pred ccEEEeecccceeee
Q 046214 51 KRKFYCTVCARRLVV 65 (66)
Q Consensus 51 krk~~Ct~C~r~L~~ 65 (66)
.+.|.|+.|++....
T Consensus 16 ~~~~~C~~C~k~f~~ 30 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIR 30 (73)
T ss_dssp CSEEECSSSCCEEEC
T ss_pred CCCeeCCcccchhCC
Confidence 467889988887653
No 145
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.24 E-value=14 Score=18.96 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=6.1
Q ss_pred cEEEeecccce
Q 046214 52 RKFYCTVCARR 62 (66)
Q Consensus 52 rk~~Ct~C~r~ 62 (66)
|.|.|..|++.
T Consensus 9 ~~~~C~~C~k~ 19 (66)
T 2eod_A 9 RTQPCTYCTKE 19 (66)
T ss_dssp CEEECSSSCCE
T ss_pred CCeeccccCCc
Confidence 45556666554
No 146
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.10 E-value=4.1 Score=18.85 Aligned_cols=13 Identities=15% Similarity=0.769 Sum_probs=8.5
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|+.|++..
T Consensus 8 ~k~~~C~~C~k~f 20 (42)
T 2yte_A 8 EKPYSCAECKETF 20 (42)
T ss_dssp CCSCBCTTTCCBC
T ss_pred CCCeECCCCCCcc
Confidence 3557777777654
No 147
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=41.07 E-value=19 Score=24.00 Aligned_cols=38 Identities=29% Similarity=0.626 Sum_probs=24.7
Q ss_pred eccCCCcCCCCCCceEEEEeceeeEEEEE-eeeeeeccEEEeeccc
Q 046214 16 TQTAPGACPFCGGMIRAMDVQSEWRFCFL-PLYFKTKRKFYCTVCA 60 (66)
Q Consensus 16 ~~~ApG~Cp~CGG~v~a~Dves~~rfCfl-P~~~k~krk~~Ct~C~ 60 (66)
.|++...||+||.. -...||-+ =|+-..|.-|-|..||
T Consensus 67 ~q~~~~~C~~Cg~~-------f~~Y~C~~C~l~d~~k~~yHC~~Cg 105 (143)
T 2dkt_A 67 LQHAQQTCEDCSTL-------FGEYYCSICHLFDKDKRQYHCESCG 105 (143)
T ss_dssp EECSCSBCSSSCCB-------SCSEECSSSCCEECSSSEEEETTTT
T ss_pred cccccCcCCCCCcc-------ceeeEeceeecccCCCceecCCCCC
Confidence 36677899999854 34567643 2223567777787776
No 148
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=41.02 E-value=2.6 Score=22.78 Aligned_cols=40 Identities=18% Similarity=0.442 Sum_probs=20.1
Q ss_pred CcCCCCCCceEEEEeceeeEEEEEeeee-eeccEEEeecccceee
Q 046214 21 GACPFCGGMIRAMDVQSEWRFCFLPLYF-KTKRKFYCTVCARRLV 64 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~-k~krk~~Ct~C~r~L~ 64 (66)
..|+.||..|...|-. .+ .+--.| .+..=|.|+.|++.|.
T Consensus 3 ~~C~~C~~~I~~~~~~--v~--a~~~~wH~~~~CF~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQR--VT--YNNFSWHASTECFLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCE--EE--ETTEEEETTTTTSBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceE--EE--ECCCccCCCCCCEECCCCCCcCC
Confidence 4688998887743210 00 011111 0134467788877764
No 149
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=40.89 E-value=2.6 Score=22.54 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 20 PGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
...|+.||.+|. .++-.. +--.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~-~~~~~a-----~~~~~-H~~CF~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVNA-----MGKQW-HVEHFVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECC-SCEECC-----TTSBE-ETTTCBCTTTCCBCS
T ss_pred CCCCcccCCEec-ceEEEE-----Ccccc-ccCcCEECCCCCCCC
Confidence 567999998886 211100 11111 233467888888775
No 150
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=40.86 E-value=9.9 Score=18.54 Aligned_cols=14 Identities=14% Similarity=0.615 Sum_probs=11.0
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 30 ~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 30 EKPYKCEFCEYAAA 43 (57)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCcCCCCCcchhC
Confidence 56799999998754
No 151
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=40.78 E-value=13 Score=20.29 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=11.7
Q ss_pred eeeccCCC--cCCCCCCc
Q 046214 14 LGTQTAPG--ACPFCGGM 29 (66)
Q Consensus 14 ~~~~~ApG--~Cp~CGG~ 29 (66)
+.-+..|- .||-||.+
T Consensus 22 t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 22 VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCGGGSCTTCBCTTTCCB
T ss_pred cchhhCCCCCcCcCCCCc
Confidence 44456676 99999975
No 152
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=40.51 E-value=6.1 Score=19.75 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=10.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.||+...
T Consensus 6 ekp~~C~~CgK~F~ 19 (36)
T 1fv5_A 6 PARFMCLPCGIAFS 19 (36)
T ss_dssp CCCCEETTTTEECS
T ss_pred ccCeECCCCCCccC
Confidence 46789999988653
No 153
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.35 E-value=2.2 Score=24.23 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=22.6
Q ss_pred CCCcCCCCCCceEEEEeceeeEEEEEeeeeee--ccEEEeecccceee
Q 046214 19 APGACPFCGGMIRAMDVQSEWRFCFLPLYFKT--KRKFYCTVCARRLV 64 (66)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~--krk~~Ct~C~r~L~ 64 (66)
....|+.||-.|...++-.. --+. +.=|.|+.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a--------~~~~wH~~CF~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV--------NGHFFHRSCFRCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB--------TTBCCBTTTCBCSSSCCBCC
T ss_pred CCCCCcccCCCcccceEEEE--------CCCeeCCCcCEEcCCCCCcC
Confidence 45579999998864332111 1122 23477888887775
No 154
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.11 E-value=3.5 Score=22.30 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 20 PGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
...|+.||-+|...+.... .+--.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~----a~~~~~-H~~CF~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV----ALDRVF-HVGCFVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE----CSSSEE-CTTTCBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE----ECCCeE-cccCCcccccCCcCC
Confidence 4689999988875321100 011111 234467888887773
No 155
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.50 E-value=4.8 Score=19.12 Aligned_cols=14 Identities=14% Similarity=0.740 Sum_probs=9.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2enf_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CcCeECCCCCcccC
Confidence 45678888877643
No 156
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.30 E-value=4.8 Score=19.02 Aligned_cols=14 Identities=14% Similarity=0.783 Sum_probs=9.1
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2eov_A 10 EKPYKCSDCGKSFT 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CCCccCCccChhhC
Confidence 35677777777543
No 157
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=39.30 E-value=12 Score=22.20 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=11.1
Q ss_pred cCCCCCCceEEEEeceeeEEE
Q 046214 22 ACPFCGGMIRAMDVQSEWRFC 42 (66)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfC 42 (66)
.|| ||-. .++|=.+.|+-|
T Consensus 6 ~C~-C~~~-~~~~~~~kT~~C 24 (71)
T 1gh9_A 6 RCD-CGRA-LYSREGAKTRKC 24 (71)
T ss_dssp EET-TSCC-EEEETTCSEEEE
T ss_pred ECC-CCCE-EEEcCCCcEEEC
Confidence 378 7655 555555555554
No 158
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=39.19 E-value=5.6 Score=18.85 Aligned_cols=14 Identities=29% Similarity=0.864 Sum_probs=10.0
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (45)
T 2epq_A 8 EKPYSCPVCGLRFK 21 (45)
T ss_dssp CCSSEETTTTEECS
T ss_pred CCCCcCCCCCcccC
Confidence 45688888887653
No 159
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=39.05 E-value=3.1 Score=23.23 Aligned_cols=21 Identities=33% Similarity=0.857 Sum_probs=12.7
Q ss_pred cCCCCCCceEEEEeceeeEEE
Q 046214 22 ACPFCGGMIRAMDVQSEWRFC 42 (66)
Q Consensus 22 ~Cp~CGG~v~a~Dves~~rfC 42 (66)
.|++||..+...--...-|||
T Consensus 20 ~C~~CG~~i~~~~~~r~krFC 40 (49)
T 2l8e_A 20 KCEYCGKYAPAEQFRGSKRFC 40 (49)
T ss_dssp ECTTTCCEEEGGGCTTTSSSC
T ss_pred cChhccCccccccCCCCCccC
Confidence 599999987643333333444
No 160
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.05 E-value=5.8 Score=22.46 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=23.0
Q ss_pred CCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 19 APGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
.+..|+.||..|...++-.. +--.| +..=|.|+.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a-----~~~~w-H~~CF~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA-----LDKQW-HVSCFKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE-----TTEEE-CTTTCBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE-----CCccc-ccccCCcCcCCCCcC
Confidence 35579999998864332111 11111 234477888888774
No 161
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=38.86 E-value=11 Score=31.00 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=10.3
Q ss_pred CCcCCCCCCceEE
Q 046214 20 PGACPFCGGMIRA 32 (66)
Q Consensus 20 pG~Cp~CGG~v~a 32 (66)
.++||+|||.++.
T Consensus 8 ~~~C~~Cg~~~~~ 20 (1104)
T 4ddu_A 8 HHSCINCGGLNTD 20 (1104)
T ss_dssp TTCCTTTSSCEEH
T ss_pred hhcCCCCcCcCch
Confidence 3699999997663
No 162
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.49 E-value=5.1 Score=19.18 Aligned_cols=14 Identities=21% Similarity=0.840 Sum_probs=9.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eon_A 10 EKPYKCQVCGKAFR 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CcccCCCCCCcccC
Confidence 45678888887643
No 163
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=38.45 E-value=8.6 Score=22.12 Aligned_cols=7 Identities=43% Similarity=1.417 Sum_probs=5.9
Q ss_pred cCCCCCC
Q 046214 22 ACPFCGG 28 (66)
Q Consensus 22 ~Cp~CGG 28 (66)
.||+||.
T Consensus 15 ~CpnC~~ 21 (59)
T 3lpe_B 15 ICPICHS 21 (59)
T ss_dssp BCTTTCC
T ss_pred CCCCCCC
Confidence 4999995
No 164
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.34 E-value=3.8 Score=22.84 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=23.5
Q ss_pred eccCCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 16 TQTAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 16 ~~~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
+.+....|+.|+-.|...-|+. +--.| +..=|.|+.|++.|.
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~~a------~~~~~-H~~CF~C~~C~~~L~ 52 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGVFVKL------RDRHR-HPECYVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCCCSSSCCCCCSSCEEC------SSCEE-CTTTTSCSSSCCCHH
T ss_pred CCCCCCccccCCCCccCcEEEE------Cccee-CcCcCeeCCCCCCCC
Confidence 3445678999999887411111 01111 223366888887764
No 165
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.29 E-value=5.7 Score=18.76 Aligned_cols=14 Identities=14% Similarity=0.745 Sum_probs=9.9
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eq3_A 10 EKPYECNQCGKAFS 23 (46)
T ss_dssp CCSSEETTTTEECS
T ss_pred CCCeECCCCChhhC
Confidence 45688888887653
No 166
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=38.19 E-value=13 Score=20.78 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=18.8
Q ss_pred CcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 21 GACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
-.||.||+.-.+.|-++. -.+|+.||..|.
T Consensus 12 ~~Cp~C~~~~lv~D~~~g--------------e~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAG--------------DMICPECGLVVG 41 (58)
T ss_dssp CSBTTBSSSCCEECSSSC--------------CEECTTTCCEEC
T ss_pred ccCcCCCCCceeEeCCCC--------------eEEeCCCCCEEe
Confidence 369999984444454433 356777776654
No 167
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=38.15 E-value=6.7 Score=24.13 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=9.3
Q ss_pred cCCCcCCCCCCce
Q 046214 18 TAPGACPFCGGMI 30 (66)
Q Consensus 18 ~ApG~Cp~CGG~v 30 (66)
+-+..|||||-..
T Consensus 51 ~g~~~CpYCg~~f 63 (80)
T 2jvm_A 51 TGFVECGYCDRRY 63 (80)
T ss_dssp TCEEECSSSSCEE
T ss_pred CCeEECCCCCCEE
Confidence 3456899999654
No 168
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.75 E-value=5 Score=18.52 Aligned_cols=13 Identities=15% Similarity=0.838 Sum_probs=8.3
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 9 ~k~~~C~~C~k~f 21 (42)
T 2ytb_A 9 EKPYRCDQCGKAF 21 (42)
T ss_dssp CCSBCCTTTTCCB
T ss_pred CCCeeCCCccchh
Confidence 3557777777654
No 169
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=37.42 E-value=3.9 Score=22.82 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=13.2
Q ss_pred eeeeccCCCcCCCCCCceEEE
Q 046214 13 VLGTQTAPGACPFCGGMIRAM 33 (66)
Q Consensus 13 v~~~~~ApG~Cp~CGG~v~a~ 33 (66)
|+..|+..-.||.|+|.=...
T Consensus 2 ~~~~qq~~~~C~~C~GsG~~i 22 (53)
T 3lcz_A 2 VIATDDLETTCPNCNGSGREE 22 (53)
T ss_dssp CSCHHHHEEECTTTTTSCEET
T ss_pred eeecCceeccCcCCcccccCC
Confidence 445566666788887765543
No 170
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.16 E-value=5.2 Score=19.00 Aligned_cols=13 Identities=23% Similarity=0.846 Sum_probs=8.8
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emg_A 10 ENPFICSECGKVF 22 (46)
T ss_dssp CCSCBCTTTCCBC
T ss_pred CCCEECCccCccc
Confidence 3567777777754
No 171
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.15 E-value=5.2 Score=19.07 Aligned_cols=14 Identities=21% Similarity=0.823 Sum_probs=9.2
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2enh_A 10 EKPYECDVCRKAFS 23 (46)
T ss_dssp SSSCBCTTTCCBCS
T ss_pred CCCcCCCCcCchhC
Confidence 35677777777643
No 172
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.06 E-value=4 Score=19.06 Aligned_cols=13 Identities=15% Similarity=0.792 Sum_probs=7.9
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (44)
T 2en7_A 10 MKPYVCNECGKAF 22 (44)
T ss_dssp SSSSCCTTTCCCC
T ss_pred CcCeECCCCCCcc
Confidence 3456677776654
No 173
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.91 E-value=5.7 Score=18.92 Aligned_cols=13 Identities=31% Similarity=1.012 Sum_probs=8.9
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|+.|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2yth_A 10 EKPFQCEECGKRF 22 (46)
T ss_dssp SSSBCCSSSCCCB
T ss_pred CcCCCCCCCCccc
Confidence 4567788887764
No 174
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.62 E-value=5.9 Score=21.90 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=23.2
Q ss_pred CCcCCCCCCceEEEEe--ceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 20 PGACPFCGGMIRAMDV--QSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 20 pG~Cp~CGG~v~a~Dv--es~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
...|+.|+-.|...|. +.. --.| +..=|.|+.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~------~~~~-H~~CF~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYK------GTVW-HKDCFTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECS------SCEE-ETTTCCCSSSCCCCT
T ss_pred CCcCccCCcccccCceEEEEC------cccc-ccccCchhhCCCccC
Confidence 4689999999875442 111 1111 244567888888774
No 175
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=36.59 E-value=4 Score=18.20 Aligned_cols=10 Identities=40% Similarity=1.175 Sum_probs=6.8
Q ss_pred EEEeecccce
Q 046214 53 KFYCTVCARR 62 (66)
Q Consensus 53 k~~Ct~C~r~ 62 (66)
.|.|..|++.
T Consensus 2 p~~C~~C~k~ 11 (32)
T 2kfq_A 2 AFACPACPKR 11 (32)
T ss_dssp CSSSSSSCTT
T ss_pred CCCCCCCCcc
Confidence 4667777764
No 176
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.45 E-value=6.3 Score=18.62 Aligned_cols=14 Identities=29% Similarity=0.864 Sum_probs=9.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 8 ~k~~~C~~C~k~f~ 21 (43)
T 2yrm_A 8 NGAFFCNECDCRFS 21 (43)
T ss_dssp SCCBCCSSSCCCBS
T ss_pred CCCEECCCCCCeeC
Confidence 45677888877653
No 177
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.44 E-value=6.2 Score=18.77 Aligned_cols=13 Identities=23% Similarity=0.925 Sum_probs=9.2
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em6_A 10 EKCYKCDVCGKEF 22 (46)
T ss_dssp CCCCBCSSSCCBC
T ss_pred CCCeECCCCCccc
Confidence 4567888887764
No 178
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.21 E-value=5 Score=19.05 Aligned_cols=13 Identities=15% Similarity=0.833 Sum_probs=8.6
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|+.|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq1_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp SCCCCCTTTTCCC
T ss_pred CCCeECCcCChhh
Confidence 4567777777654
No 179
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.12 E-value=6.5 Score=18.55 Aligned_cols=14 Identities=14% Similarity=0.740 Sum_probs=10.1
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2eoe_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CCSSEETTTTEECS
T ss_pred CCCeECCCcChhhC
Confidence 46688888887643
No 180
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=36.06 E-value=12 Score=18.16 Aligned_cols=14 Identities=29% Similarity=0.626 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 27 ~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 27 VRPYHCTYCNFSFK 40 (57)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCccCCCCCchhc
Confidence 46789999998754
No 181
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=36.01 E-value=11 Score=23.99 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=17.0
Q ss_pred cCCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeeccc
Q 046214 18 TAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCA 60 (66)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~ 60 (66)
+.--.||+||-.+- +..+..|..||
T Consensus 14 KtH~lCrRCG~~sf------------------H~qK~~CgkCG 38 (97)
T 2zkr_2 14 KTHTLCRRCGSKAY------------------HLQKSTCGKCG 38 (97)
T ss_dssp CCEECCTTTCSSCE------------------ETTSCCBTTTC
T ss_pred CCCCcCCCCCCccC------------------cCccccCcccC
Confidence 34457999997753 44566777777
No 182
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=35.98 E-value=13 Score=18.44 Aligned_cols=13 Identities=15% Similarity=0.810 Sum_probs=8.2
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (54)
T 2eps_A 10 GKPYICQSCGKGF 22 (54)
T ss_dssp SCCEECSSSCCEE
T ss_pred CCCeECCCCCccc
Confidence 3557777777654
No 183
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.90 E-value=5.9 Score=18.85 Aligned_cols=13 Identities=15% Similarity=0.731 Sum_probs=8.7
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2elz_A 10 EKPYKCEDCGKGY 22 (46)
T ss_dssp CSSCBCSSSCCBC
T ss_pred CCCeeCcccCchh
Confidence 4567777777654
No 184
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.82 E-value=5.4 Score=18.81 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=8.7
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~~~~~C~~C~k~f 22 (44)
T 2eou_A 10 KTTSECQECGKIF 22 (44)
T ss_dssp SCCCCCTTTCCCC
T ss_pred CcCeECCCCCccc
Confidence 4567777777654
No 185
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.70 E-value=5.6 Score=18.86 Aligned_cols=13 Identities=23% Similarity=0.848 Sum_probs=8.8
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2ytn_A 10 KKPYKCNECGKVF 22 (46)
T ss_dssp CSSCBCTTTCCBC
T ss_pred CcCeECCCCCCee
Confidence 4567777777654
No 186
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=35.64 E-value=18 Score=23.77 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=13.0
Q ss_pred CcCCCCCCceEEEEeceee
Q 046214 21 GACPFCGGMIRAMDVQSEW 39 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~ 39 (66)
..||+||..-++.-||+.-
T Consensus 53 akcprcgaegsvsivetkn 71 (131)
T 2x5c_A 53 AKCPRCGAEGSVSIVETKN 71 (131)
T ss_dssp EECTTTSCEEEEEEEECTT
T ss_pred ccCCCCCCccceEEEEecC
Confidence 3599999766666666543
No 187
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.59 E-value=6.1 Score=18.79 Aligned_cols=13 Identities=31% Similarity=0.881 Sum_probs=8.8
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2en9_A 10 KKLFKCNECKKTF 22 (46)
T ss_dssp SCCCBCTTTCCBC
T ss_pred CCCEECCccCccc
Confidence 4567777777654
No 188
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.20 E-value=6.4 Score=18.73 Aligned_cols=13 Identities=15% Similarity=0.810 Sum_probs=8.9
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytq_A 10 EKPYGCSECGKAF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CCCcCCCccChhh
Confidence 4567788887764
No 189
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=35.18 E-value=6.6 Score=23.32 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=9.1
Q ss_pred cCCCcCCCCCCce
Q 046214 18 TAPGACPFCGGMI 30 (66)
Q Consensus 18 ~ApG~Cp~CGG~v 30 (66)
+-+..|||||-..
T Consensus 38 ~g~~~CpYCg~~f 50 (67)
T 2jrr_A 38 TGWVECPYCDCKY 50 (67)
T ss_dssp TSEEEETTTTEEE
T ss_pred CCeEECCCCCCEE
Confidence 3456899998544
No 190
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.18 E-value=6.3 Score=18.61 Aligned_cols=14 Identities=21% Similarity=0.854 Sum_probs=9.3
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 10 ~k~~~C~~C~k~F~ 23 (47)
T 2epx_A 10 KKPYECIECGKAFI 23 (47)
T ss_dssp CCSBCCSSSCCCBS
T ss_pred CCCEECCccCchhC
Confidence 45677888877643
No 191
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=35.18 E-value=10 Score=22.66 Aligned_cols=9 Identities=44% Similarity=1.357 Sum_probs=6.7
Q ss_pred CCcCCCCCC
Q 046214 20 PGACPFCGG 28 (66)
Q Consensus 20 pG~Cp~CGG 28 (66)
.-.||+||.
T Consensus 23 ~~~CPnC~s 31 (69)
T 1ryq_A 23 EDRCPVCGS 31 (69)
T ss_dssp SSSCTTTCC
T ss_pred CCcCCCccC
Confidence 346999984
No 192
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=35.13 E-value=12 Score=19.18 Aligned_cols=14 Identities=29% Similarity=0.954 Sum_probs=11.0
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 47 ~~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 47 QKPFQCRICMRNFS 60 (73)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCeECCCCCchhC
Confidence 46799999998754
No 193
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=35.09 E-value=12 Score=23.38 Aligned_cols=13 Identities=31% Similarity=1.002 Sum_probs=9.2
Q ss_pred CCCcCCCCCCceE
Q 046214 19 APGACPFCGGMIR 31 (66)
Q Consensus 19 ApG~Cp~CGG~v~ 31 (66)
-...|||||-..+
T Consensus 47 g~~~CpYCg~~y~ 59 (87)
T 2jz8_A 47 DEKICPYCSTLYR 59 (87)
T ss_dssp CEECCTTTCCEEE
T ss_pred CeEECCCCCCEeE
Confidence 3458999996543
No 194
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.86 E-value=5.4 Score=19.01 Aligned_cols=13 Identities=31% Similarity=0.922 Sum_probs=8.8
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emz_A 10 ERPFKCNECGKGF 22 (46)
T ss_dssp CCSCCCSSSCCCC
T ss_pred CCCeECCCCCccc
Confidence 4567777777754
No 195
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.81 E-value=12 Score=19.64 Aligned_cols=14 Identities=21% Similarity=0.838 Sum_probs=9.3
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 13 ~k~~~C~~C~k~f~ 26 (77)
T 2ct1_A 13 EKPYECYICHARFT 26 (77)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCeECCCcCchhC
Confidence 45677777777653
No 196
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.71 E-value=5.7 Score=18.98 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=9.0
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2eom_A 10 ERGHRCSDCGKFF 22 (46)
T ss_dssp CSSCCCSSSCCCC
T ss_pred CCCcCCCCCCCee
Confidence 4567788887754
No 197
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.58 E-value=5 Score=18.97 Aligned_cols=13 Identities=15% Similarity=0.828 Sum_probs=8.5
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ep1_A 10 EKPYECSDCGKSF 22 (46)
T ss_dssp CCSSCCSSSCCCC
T ss_pred CCCcCCCCCCchh
Confidence 4557777777654
No 198
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.36 E-value=7.4 Score=21.37 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=23.1
Q ss_pred CcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceeee
Q 046214 21 GACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLVV 65 (66)
Q Consensus 21 G~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (66)
..|+.||.+|..--|+ .+--.| +..=|.|+.|++.|..
T Consensus 16 ~~C~~C~~~I~~~~v~------a~~~~~-H~~CF~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLS------AMDTVW-HPECFVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCSSCEE------ETTEEE-CTTTCBCSSSCCBSCS
T ss_pred CccccCCCeecceeEE------ECCCeE-ecCcCChhhCCCCCCC
Confidence 5899999998741111 111111 2345779999988853
No 199
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.27 E-value=4.4 Score=21.84 Aligned_cols=40 Identities=20% Similarity=0.457 Sum_probs=21.1
Q ss_pred CCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 20 PGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
...|+.||-+|...+.-.. ..--.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~----a~~~~~-H~~CF~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE----YGGQTW-HEHCFLCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC----STTCCE-ETTTCBCTTTCCBTT
T ss_pred CCCCccCCCccccCccEEE----ECcccc-CcccCeECCCCCcCC
Confidence 4589999988875321100 000011 233466777777664
No 200
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.03 E-value=6.2 Score=18.62 Aligned_cols=13 Identities=15% Similarity=0.677 Sum_probs=8.4
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|+.|++..
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eop_A 10 EKPHECRECGKSF 22 (46)
T ss_dssp CCSCBCTTTCCBC
T ss_pred CCCeeCCCCCchh
Confidence 4557777777654
No 201
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=33.99 E-value=13 Score=25.08 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=10.9
Q ss_pred cCCCcCCCCCCceE
Q 046214 18 TAPGACPFCGGMIR 31 (66)
Q Consensus 18 ~ApG~Cp~CGG~v~ 31 (66)
.|.+.||.|+|.+.
T Consensus 76 Gal~~CP~C~G~l~ 89 (160)
T 2riq_A 76 GALLPCEECSGQLV 89 (160)
T ss_dssp CEECCCTTTCCCEE
T ss_pred CCCCCCCCCCCEEE
Confidence 46789999998544
No 202
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=33.82 E-value=7 Score=19.57 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=17.7
Q ss_pred EEEecCcceeeeeccCCCcCCCCCC
Q 046214 4 VCVCDEDERVLGTQTAPGACPFCGG 28 (66)
Q Consensus 4 ~~vcde~~kv~~~~~ApG~Cp~CGG 28 (66)
+|-|++.+-+.+.=+.+..|-+||.
T Consensus 3 C~~Cg~~GH~~~~C~~~~~C~~Cg~ 27 (37)
T 2bl6_A 3 CYNCGKPGHLSSQCRAPKVCFKCKQ 27 (37)
T ss_dssp BSSSCCSSCCTTTSSCBTTCSSCCC
T ss_pred ccccCCCCcchhhCcCcCeEccCCC
Confidence 4556677766666667788888885
No 203
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.70 E-value=7.5 Score=21.55 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=9.3
Q ss_pred CcCCCCCCceE
Q 046214 21 GACPFCGGMIR 31 (66)
Q Consensus 21 G~Cp~CGG~v~ 31 (66)
-.|+.||..|.
T Consensus 16 ~~C~~C~~~I~ 26 (81)
T 1v6g_A 16 TRCFSCDQFIE 26 (81)
T ss_dssp CBCTTTCCBCC
T ss_pred CcCccccCEec
Confidence 38999999887
No 204
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.33 E-value=6.2 Score=18.68 Aligned_cols=13 Identities=23% Similarity=1.007 Sum_probs=8.5
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eoq_A 10 EKPFKCDICGKSF 22 (46)
T ss_dssp SCSCCCSSSCCCC
T ss_pred CCCcCCCcCCchh
Confidence 3567777777654
No 205
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.04 E-value=7.7 Score=20.78 Aligned_cols=38 Identities=26% Similarity=0.485 Sum_probs=22.1
Q ss_pred CCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 20 PGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
...|+.|+-+|.+-.|+.. --.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~------~~~~-H~~CF~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYR------EQPW-HKECFVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSSEEESS------SSEE-ETTTSBCSSSCCBCT
T ss_pred CCCCcccCCeeccceEEEC------cccc-CCCCCccCCCCCcCC
Confidence 4579999998864222211 1111 234467888888774
No 206
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.02 E-value=6.4 Score=18.73 Aligned_cols=13 Identities=23% Similarity=0.841 Sum_probs=8.9
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eoh_A 10 KKPYECKECRKTF 22 (46)
T ss_dssp SCSCCCSSSCCCC
T ss_pred CCCcCCCCcCchh
Confidence 4567788777654
No 207
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.99 E-value=7.1 Score=18.38 Aligned_cols=13 Identities=15% Similarity=0.812 Sum_probs=8.8
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|+.|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq4_A 10 EKLYNCKECGKSF 22 (46)
T ss_dssp CCCCCBTTTTBCC
T ss_pred CCCeECCCCCCcc
Confidence 4567788787754
No 208
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=32.97 E-value=8 Score=22.08 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=9.2
Q ss_pred CCcCCCCCCceE
Q 046214 20 PGACPFCGGMIR 31 (66)
Q Consensus 20 pG~Cp~CGG~v~ 31 (66)
...|+.||-+|.
T Consensus 5 ~~~C~~C~~~I~ 16 (101)
T 2cup_A 5 SSGCVECRKPIG 16 (101)
T ss_dssp CCBCSSSCCBCC
T ss_pred CCcCcccCCccc
Confidence 457888888875
No 209
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.93 E-value=5.2 Score=18.98 Aligned_cols=13 Identities=15% Similarity=0.784 Sum_probs=8.2
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq2_A 10 GKPYQCNECGKAF 22 (46)
T ss_dssp SCSSSCCSSCCCC
T ss_pred CCCeECCCCCccc
Confidence 3556777777654
No 210
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.79 E-value=6.8 Score=18.55 Aligned_cols=13 Identities=23% Similarity=0.810 Sum_probs=8.9
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2epz_A 10 EKPFDCIDCGKAF 22 (46)
T ss_dssp CCSBCCTTTCCCB
T ss_pred CCCeECCCCCcee
Confidence 4567788887754
No 211
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=32.61 E-value=4.6 Score=26.10 Aligned_cols=37 Identities=32% Similarity=0.652 Sum_probs=20.9
Q ss_pred cCCCCCCceEEEEe-ceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 22 ACPFCGGMIRAMDV-QSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 22 ~Cp~CGG~v~a~Dv-es~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
.|+.|+..|...|. -+...--| +..=|.|+.|++.|.
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~------H~~CF~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVY------HLKCFTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEE------CGGGCBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEEcCCCEE------eCCCCeECCCCCCCC
Confidence 79999999875331 11111111 234467888877773
No 212
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=32.56 E-value=13 Score=18.31 Aligned_cols=14 Identities=21% Similarity=0.828 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 28 ~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 28 EKPYPCGLCNRAFT 41 (60)
T ss_dssp SCSEECTTTCCEES
T ss_pred CCCccCCCCCCccC
Confidence 46789999998754
No 213
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=32.53 E-value=19 Score=19.61 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=11.6
Q ss_pred eeccCCCcCCCCCCce
Q 046214 15 GTQTAPGACPFCGGMI 30 (66)
Q Consensus 15 ~~~~ApG~Cp~CGG~v 30 (66)
|.+...-.||.||+.-
T Consensus 4 ~~~t~~~~Cp~Cg~~~ 19 (50)
T 1tfi_A 4 GTQTDLFTCGKCKKKN 19 (50)
T ss_dssp CEECCCSCCSSSCSSC
T ss_pred CceeCccCCCCCCCCE
Confidence 4555667899999753
No 214
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.34 E-value=16 Score=18.91 Aligned_cols=12 Identities=17% Similarity=0.802 Sum_probs=6.7
Q ss_pred cEEEeeccccee
Q 046214 52 RKFYCTVCARRL 63 (66)
Q Consensus 52 rk~~Ct~C~r~L 63 (66)
+.|.|..|++..
T Consensus 13 k~~~C~~C~k~f 24 (72)
T 1x6e_A 13 KPYGCVECGKAF 24 (72)
T ss_dssp CCEECSSSCCEE
T ss_pred CCccCCCCCCcc
Confidence 455666666544
No 215
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=32.25 E-value=7.6 Score=16.69 Aligned_cols=11 Identities=45% Similarity=1.225 Sum_probs=7.0
Q ss_pred EEEee--ccccee
Q 046214 53 KFYCT--VCARRL 63 (66)
Q Consensus 53 k~~Ct--~C~r~L 63 (66)
.|.|+ .||+..
T Consensus 2 p~~C~~~~C~k~f 14 (31)
T 1sp2_A 2 PFMCTWSYCGKRF 14 (31)
T ss_dssp CCBCCSTTCCCBC
T ss_pred CcCCcCCCCCccc
Confidence 46676 677654
No 216
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.24 E-value=14 Score=18.94 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=8.0
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 7 ~~~~~C~~C~k~f 19 (70)
T 1x5w_A 7 GHPEKCSECSYSC 19 (70)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCeECCCCCccc
Confidence 3556677776654
No 217
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=32.21 E-value=20 Score=20.79 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=8.1
Q ss_pred CCCCCCceEE
Q 046214 23 CPFCGGMIRA 32 (66)
Q Consensus 23 Cp~CGG~v~a 32 (66)
||.|+.++.+
T Consensus 28 CP~C~~~~~~ 37 (86)
T 2ct7_A 28 CAQCSFGFIY 37 (86)
T ss_dssp CSSSCCCEEC
T ss_pred CcCCCchhee
Confidence 9999988754
No 218
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.19 E-value=7.4 Score=22.09 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=22.7
Q ss_pred CCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 19 APGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
....|..|+-.|...-|+. +--.| +..=|.|+.|++.|.
T Consensus 24 ~~~~C~~C~~~I~~~~~~a------~~~~~-H~~CF~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKA------RDKYR-HPECFVCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCSCCEES------SSCEE-CTTTCCCSSSCCCTT
T ss_pred cCCCcccCCCEecccEEEE------CCceE-CccCCEecCCCCCCC
Confidence 4467999999887411111 11111 234467888888774
No 219
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.18 E-value=14 Score=19.25 Aligned_cols=14 Identities=29% Similarity=0.833 Sum_probs=11.1
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 36 ~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 36 ALRFPCEFCGKRFE 49 (78)
T ss_dssp TCCEECTTTCCEES
T ss_pred CcccCCCCCCchhC
Confidence 46799999998764
No 220
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=32.05 E-value=26 Score=21.34 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=7.6
Q ss_pred CcCCCCCCceEE
Q 046214 21 GACPFCGGMIRA 32 (66)
Q Consensus 21 G~Cp~CGG~v~a 32 (66)
..||-|+..+..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 357777766654
No 221
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=31.96 E-value=7.3 Score=18.49 Aligned_cols=13 Identities=15% Similarity=0.807 Sum_probs=8.6
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emk_A 10 EKPYECKECGKAF 22 (46)
T ss_dssp SCSCBCSSSCCBC
T ss_pred CCceECCCCCchh
Confidence 3557777777654
No 222
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=31.89 E-value=11 Score=21.03 Aligned_cols=9 Identities=33% Similarity=1.383 Sum_probs=6.3
Q ss_pred EEeecccce
Q 046214 54 FYCTVCARR 62 (66)
Q Consensus 54 ~~Ct~C~r~ 62 (66)
..||||||.
T Consensus 12 ~~CSFCGk~ 20 (51)
T 2ds5_A 12 LYCSFCGKS 20 (51)
T ss_dssp CBCTTTCCB
T ss_pred cEecCCCCC
Confidence 358888864
No 223
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=31.86 E-value=21 Score=26.17 Aligned_cols=34 Identities=24% Similarity=0.736 Sum_probs=19.8
Q ss_pred CCcCCCCCC-ceEEEEeceeeEEEEEeeeeeeccEEEeecccceeee
Q 046214 20 PGACPFCGG-MIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLVV 65 (66)
Q Consensus 20 pG~Cp~CGG-~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~~ 65 (66)
.+.||+||- .++.. +..... .-|+|..|+-.+++
T Consensus 34 n~yCPnCG~~~l~~f--~nN~PV----------aDF~C~~C~EeyEL 68 (257)
T 4esj_A 34 QSYCPNCGNNPLNHF--ENNRPV----------ADFYCNHCSEEFEL 68 (257)
T ss_dssp HCCCTTTCCSSCEEC------CC----------CEEECTTTCCEEEE
T ss_pred CCcCCCCCChhhhhc--cCCCcc----------cccccCCcchhhee
Confidence 468999998 35332 222211 24788888877654
No 224
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=31.71 E-value=20 Score=21.50 Aligned_cols=15 Identities=20% Similarity=0.665 Sum_probs=12.1
Q ss_pred eccEEEeecccceee
Q 046214 50 TKRKFYCTVCARRLV 64 (66)
Q Consensus 50 ~krk~~Ct~C~r~L~ 64 (66)
..++++|+.||-.|-
T Consensus 64 ~~~r~FC~~CGs~l~ 78 (118)
T 3fac_A 64 TAKHWFCRTCGIYTH 78 (118)
T ss_dssp CSEEEEETTTCCEEE
T ss_pred CEeeEECCCCCcccc
Confidence 357899999998773
No 225
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=31.52 E-value=3.5 Score=22.85 Aligned_cols=40 Identities=23% Similarity=0.518 Sum_probs=28.4
Q ss_pred ccCCCcCC-CCCCceEEEEeceeeE-EEEEeeeeeeccEEEeeccccee
Q 046214 17 QTAPGACP-FCGGMIRAMDVQSEWR-FCFLPLYFKTKRKFYCTVCARRL 63 (66)
Q Consensus 17 ~~ApG~Cp-~CGG~v~a~Dves~~r-fCflP~~~k~krk~~Ct~C~r~L 63 (66)
.-++-.|| .||..+.-.|++.... -| .+|...|.+|+..+
T Consensus 13 ~~~~v~C~~~C~~~v~r~~l~~H~~~~C-------~~r~v~C~~C~~~~ 54 (76)
T 2yuc_A 13 SFNVIPCPNRCPMKLSRRDLPAHLQHDC-------PKRRLKCEFCGCDF 54 (76)
T ss_dssp CCSCCBCTTCCSCBCCSSSSTTTTTTSC-------TTSCCCCSSSCCCC
T ss_pred CCcccCCCccccHHhhHhHHHhhCHhhC-------CCcceECCCCCCcc
Confidence 34566784 7999988888887765 44 35777788887654
No 226
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=30.90 E-value=15 Score=22.23 Aligned_cols=11 Identities=27% Similarity=0.609 Sum_probs=8.6
Q ss_pred CCCcCCCCCCc
Q 046214 19 APGACPFCGGM 29 (66)
Q Consensus 19 ApG~Cp~CGG~ 29 (66)
.---||.||++
T Consensus 29 ~k~FCp~CGn~ 39 (79)
T 2con_A 29 NRVFCGHCGNK 39 (79)
T ss_dssp SCCSCSSSCCS
T ss_pred ccccccccCcc
Confidence 44579999996
No 227
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=30.78 E-value=20 Score=24.15 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=10.7
Q ss_pred cCCCcCCCCCCc
Q 046214 18 TAPGACPFCGGM 29 (66)
Q Consensus 18 ~ApG~Cp~CGG~ 29 (66)
.+|-.||-||.+
T Consensus 184 ~~p~~CP~C~~~ 195 (202)
T 1yuz_A 184 EDFEKCPICFRP 195 (202)
T ss_dssp SCCSBCTTTCCB
T ss_pred cCCCCCCCCCCC
Confidence 688999999986
No 228
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=30.64 E-value=15 Score=25.43 Aligned_cols=13 Identities=31% Similarity=0.795 Sum_probs=9.8
Q ss_pred cCCCCCCceEEEE
Q 046214 22 ACPFCGGMIRAMD 34 (66)
Q Consensus 22 ~Cp~CGG~v~a~D 34 (66)
.|..|||.-.+--
T Consensus 136 ~C~~Cgg~fv~~~ 148 (192)
T 2avu_E 136 SCNCCGGNFITHA 148 (192)
T ss_dssp ECTTTCCEEEEES
T ss_pred cCCCCCCCeeCcc
Confidence 5999999866543
No 229
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=30.52 E-value=38 Score=25.27 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=14.8
Q ss_pred ecCcceeeeeccCCCcCCCCCC
Q 046214 7 CDEDERVLGTQTAPGACPFCGG 28 (66)
Q Consensus 7 cde~~kv~~~~~ApG~Cp~CGG 28 (66)
+-..+..+.-+..-|.||.||.
T Consensus 142 ~~~~~~~l~~~~v~g~cp~c~~ 163 (560)
T 3h99_A 142 DPEKGMFLPDRFVKGTCPKCKS 163 (560)
T ss_dssp ETTTTEECCGGGEEEECTTTCC
T ss_pred cCccCceecchhcCCCCCCCCC
Confidence 4455566666666788999883
No 230
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=30.24 E-value=16 Score=19.68 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=9.9
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.||+...
T Consensus 30 ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 30 YRPRSCPECGKCFR 43 (60)
T ss_dssp CCCEECTTTCCEES
T ss_pred CcCeECCCCCCCcC
Confidence 46788888887653
No 231
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.24 E-value=16 Score=18.89 Aligned_cols=41 Identities=17% Similarity=0.447 Sum_probs=23.2
Q ss_pred cCCCcCCCCCCceEE-EEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 18 TAPGACPFCGGMIRA-MDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 18 ~ApG~Cp~CGG~v~a-~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
.-+-.|+.||-...- .++....+ .....+.|.|..|++...
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~~H~~------~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLASHKT------VHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHHHHHH------HHCCCCSEECTTTCCEES
T ss_pred CCCeECCCCCceeCCHHHHHHHHH------HcCCCCCEECCCCCchhC
Confidence 345678888865432 12222221 122356799999998764
No 232
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=30.18 E-value=20 Score=16.10 Aligned_cols=14 Identities=21% Similarity=0.721 Sum_probs=9.9
Q ss_pred ccEEEeec--ccceee
Q 046214 51 KRKFYCTV--CARRLV 64 (66)
Q Consensus 51 krk~~Ct~--C~r~L~ 64 (66)
.+.|.|+. |++...
T Consensus 6 ~k~~~C~~~~C~k~f~ 21 (37)
T 1va1_A 6 KKQHICHIQGCGKVYG 21 (37)
T ss_dssp CCCEECCSTTCCCEES
T ss_pred CCCCCCCCCCCCCccC
Confidence 46788885 887654
No 233
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=29.95 E-value=32 Score=24.75 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=20.8
Q ss_pred cCCCCCC--ceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 22 ACPFCGG--MIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 22 ~Cp~CGG--~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
.||.||+ .-.+.|-++. -++|+.||-.|.
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G--------------~~vC~~CGlVl~ 53 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEG--------------DVVCALCGLVLS 53 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGT--------------EEEETTTCBEEE
T ss_pred cCCCCCCCCCceeEECCCC--------------cEEeCCCCCCcc
Confidence 7999998 4566776654 456678887764
No 234
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=29.75 E-value=20 Score=24.34 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=9.3
Q ss_pred CCcCCCCCCceE
Q 046214 20 PGACPFCGGMIR 31 (66)
Q Consensus 20 pG~Cp~CGG~v~ 31 (66)
.-.||.|||.+.
T Consensus 145 ~p~C~~Cgg~lr 156 (246)
T 1yc5_A 145 VPLCDDCNSLIR 156 (246)
T ss_dssp SCBCTTTCCBEE
T ss_pred CCCCCCCCCccC
Confidence 448999999763
No 235
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=29.71 E-value=8.4 Score=18.19 Aligned_cols=13 Identities=15% Similarity=0.621 Sum_probs=8.5
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2em0_A 10 EKTWKCRECDMCF 22 (46)
T ss_dssp CCCCCCSSSCCCC
T ss_pred CcCeECCCCCccc
Confidence 4567777777654
No 236
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=29.65 E-value=33 Score=25.17 Aligned_cols=15 Identities=27% Similarity=0.711 Sum_probs=10.7
Q ss_pred ccCCCcCCCCCCceE
Q 046214 17 QTAPGACPFCGGMIR 31 (66)
Q Consensus 17 ~~ApG~Cp~CGG~v~ 31 (66)
.+.+..||+||+...
T Consensus 260 ~~~~~~C~~cg~~~~ 274 (392)
T 3axs_A 260 YKFKEKCPHCGSKFH 274 (392)
T ss_dssp GGCCSBCTTTCSBCE
T ss_pred CCCCCcCCCCCCccc
Confidence 356788999987544
No 237
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.43 E-value=6.4 Score=18.80 Aligned_cols=13 Identities=15% Similarity=0.805 Sum_probs=8.7
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytm_A 10 EKPYKCMECGKAF 22 (46)
T ss_dssp CCSSSBTTTTBCC
T ss_pred CCCcCCCCCCchh
Confidence 4567777777654
No 238
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.35 E-value=5.3 Score=18.87 Aligned_cols=13 Identities=15% Similarity=0.833 Sum_probs=7.5
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytr_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp CCTTCCTTTCCCC
T ss_pred CcCcCCCCCCCcc
Confidence 3456666666653
No 239
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=29.30 E-value=18 Score=20.95 Aligned_cols=14 Identities=14% Similarity=0.572 Sum_probs=11.5
Q ss_pred eccEEEeeccccee
Q 046214 50 TKRKFYCTVCARRL 63 (66)
Q Consensus 50 ~krk~~Ct~C~r~L 63 (66)
...+|.|+.|+.++
T Consensus 23 ~~akY~CPrC~~rY 36 (59)
T 1x4s_A 23 QPARYTCPRCNAPY 36 (59)
T ss_dssp EEECEECTTTCCEE
T ss_pred CCccccCcCCCCCc
Confidence 66789999998875
No 240
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=29.28 E-value=30 Score=21.06 Aligned_cols=13 Identities=38% Similarity=1.094 Sum_probs=10.8
Q ss_pred CCCcCCCCCCceE
Q 046214 19 APGACPFCGGMIR 31 (66)
Q Consensus 19 ApG~Cp~CGG~v~ 31 (66)
..|.|+|||..+.
T Consensus 34 ~~~~C~yCg~~~~ 46 (112)
T 2qgp_A 34 ARGICHYCGEIFP 46 (112)
T ss_dssp HHTBCTTTCCBCC
T ss_pred cCCcCCCCCCcCC
Confidence 5689999998863
No 241
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.18 E-value=5.8 Score=18.82 Aligned_cols=13 Identities=15% Similarity=0.797 Sum_probs=8.1
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2yti_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CCTTCCSSSCCCC
T ss_pred CcCeECCCCCccc
Confidence 3456777777654
No 242
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=29.11 E-value=16 Score=21.14 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=9.0
Q ss_pred CCcCCCCCCceE
Q 046214 20 PGACPFCGGMIR 31 (66)
Q Consensus 20 pG~Cp~CGG~v~ 31 (66)
...||.||+...
T Consensus 18 k~~CP~CG~~T~ 29 (60)
T 2apo_B 18 KEICPKCGEKTV 29 (60)
T ss_dssp SSBCSSSCSBCB
T ss_pred cccCcCCCCcCC
Confidence 567999998754
No 243
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.83 E-value=9.3 Score=16.41 Aligned_cols=13 Identities=31% Similarity=0.876 Sum_probs=8.0
Q ss_pred cEEEee--cccceee
Q 046214 52 RKFYCT--VCARRLV 64 (66)
Q Consensus 52 rk~~Ct--~C~r~L~ 64 (66)
+.|.|+ .|++...
T Consensus 2 k~~~C~~~~C~k~f~ 16 (32)
T 1zfd_A 2 RPYSCDHPGCDKAFV 16 (32)
T ss_dssp CSBCCCCTTCCCCBS
T ss_pred CCCcCcCCCCCCccC
Confidence 456677 6776543
No 244
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.55 E-value=19 Score=18.73 Aligned_cols=14 Identities=14% Similarity=0.736 Sum_probs=9.1
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 13 ~k~~~C~~C~~~f~ 26 (86)
T 1x6h_A 13 EKPYACSHCDKTFR 26 (86)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCCcCCCCCCccC
Confidence 35677777776653
No 245
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.48 E-value=20 Score=19.73 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=22.9
Q ss_pred CCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 19 APGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
....|+.||.+|...-|+ .+--.| +..=|.|+.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~------a~~~~~-H~~CF~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILR------AMGKAY-HPGCFTCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCCSCCEE------ETTEEE-CTTTCBCSSSCCBCT
T ss_pred CCCccccCCCeecceeEE------ECCccc-cHHhcCcccCCCccC
Confidence 457899999988621111 111111 234477888888874
No 246
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=28.37 E-value=21 Score=24.36 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=9.5
Q ss_pred CCcCCCCCCceE
Q 046214 20 PGACPFCGGMIR 31 (66)
Q Consensus 20 pG~Cp~CGG~v~ 31 (66)
+-.||.|||.+.
T Consensus 142 ~p~C~~Cgg~lr 153 (249)
T 1m2k_A 142 LPKCDKCGSLLR 153 (249)
T ss_dssp CCBCSSSSSBEE
T ss_pred CCCCCCCCCCcC
Confidence 458999999763
No 247
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=28.09 E-value=22 Score=21.55 Aligned_cols=14 Identities=36% Similarity=0.864 Sum_probs=10.1
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
++.|.|+.|++...
T Consensus 20 ek~y~C~~C~k~F~ 33 (133)
T 2lt7_A 20 RVYYICIVCKRSYV 33 (133)
T ss_dssp EEEEEETTTCCEES
T ss_pred CcCeECCCCCCCcC
Confidence 46688888887654
No 248
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=27.82 E-value=21 Score=17.84 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=8.6
Q ss_pred EEEeeccccee
Q 046214 53 KFYCTVCARRL 63 (66)
Q Consensus 53 k~~Ct~C~r~L 63 (66)
+|.|+.|..++
T Consensus 3 k~~CpvCk~q~ 13 (28)
T 2jvx_A 3 DFCCPKCQYQA 13 (28)
T ss_dssp CEECTTSSCEE
T ss_pred cccCccccccC
Confidence 67888888765
No 249
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=27.51 E-value=46 Score=19.38 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=7.0
Q ss_pred cCCCcCCCCCCce
Q 046214 18 TAPGACPFCGGMI 30 (66)
Q Consensus 18 ~ApG~Cp~CGG~v 30 (66)
+.--.|+.||-.+
T Consensus 26 ~v~Y~C~~CG~~~ 38 (70)
T 1twf_L 26 TLKYICAECSSKL 38 (70)
T ss_dssp CCCEECSSSCCEE
T ss_pred eEEEECCCCCCcc
Confidence 3444566666543
No 250
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.32 E-value=21 Score=19.89 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=10.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 17 ~~~~~C~~C~k~f~ 30 (115)
T 2dmi_A 17 ASKFRCKDCSAAYD 30 (115)
T ss_dssp CCSEEBSSSSCEES
T ss_pred CCCEECCccCchhc
Confidence 46788999988754
No 251
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.30 E-value=36 Score=19.14 Aligned_cols=40 Identities=20% Similarity=0.478 Sum_probs=23.8
Q ss_pred cCCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 18 TAPGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 18 ~ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
.....|+.||..|..- .+-.+--.| ++.=|.|+.|++.|.
T Consensus 23 ~~~~~C~~C~~~I~~~------~v~a~~~~~-H~~CF~C~~C~~~L~ 62 (90)
T 2dar_A 23 KRTPMCAHCNQVIRGP------FLVALGKSW-HPEEFNCAHCKNTMA 62 (90)
T ss_dssp TCCCBBSSSCCBCCSC------EEEETTEEE-CTTTCBCSSSCCBCS
T ss_pred CCCCCCccCCCEecce------EEEECCccc-cccCCccCCCCCCCC
Confidence 3456899999988421 111111122 345578889988875
No 252
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=27.08 E-value=24 Score=24.61 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=9.3
Q ss_pred CCcCCCCCCceE
Q 046214 20 PGACPFCGGMIR 31 (66)
Q Consensus 20 pG~Cp~CGG~v~ 31 (66)
.-.||.|||.+.
T Consensus 163 ~P~C~~Cgg~lr 174 (289)
T 1q1a_A 163 FVKCDVCGELVK 174 (289)
T ss_dssp CCBCTTTCCBEE
T ss_pred CccCCCCCCEEC
Confidence 358999999753
No 253
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=26.80 E-value=26 Score=18.51 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=5.6
Q ss_pred EEeeccccee
Q 046214 54 FYCTVCARRL 63 (66)
Q Consensus 54 ~~Ct~C~r~L 63 (66)
+.|++|+..+
T Consensus 10 ~~C~~C~~~i 19 (39)
T 2i5o_A 10 VPCEKCGSLV 19 (39)
T ss_dssp EECTTTCCEE
T ss_pred cccccccCcC
Confidence 4566666554
No 254
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.77 E-value=19 Score=22.11 Aligned_cols=39 Identities=26% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 20 PGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
+..|+.||..|.... .+-.+--.| +..=|.|+.|++.|.
T Consensus 61 ~~~C~~C~~~I~~~~-----~v~a~~~~w-H~~CF~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF-----LLYAMDSYW-HSRCLKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS-----EEEETTEEE-ETTTSBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE-----EEEeCCcEE-cccccCcCcCCCccc
Confidence 457999999886321 111111111 234578999998884
No 255
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.70 E-value=17 Score=19.87 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.4
Q ss_pred CCcCCCCCCceE
Q 046214 20 PGACPFCGGMIR 31 (66)
Q Consensus 20 pG~Cp~CGG~v~ 31 (66)
+..|+.||-+|.
T Consensus 5 ~~~C~~C~~~I~ 16 (76)
T 1x68_A 5 SSGCVACSKPIS 16 (76)
T ss_dssp CCCCTTTCCCCC
T ss_pred CCCCccCCCccc
Confidence 457899988776
No 256
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=26.60 E-value=30 Score=20.05 Aligned_cols=13 Identities=31% Similarity=0.935 Sum_probs=9.8
Q ss_pred CCcCCCCCCceEE
Q 046214 20 PGACPFCGGMIRA 32 (66)
Q Consensus 20 pG~Cp~CGG~v~a 32 (66)
...||.||+....
T Consensus 17 k~~CP~CG~~t~~ 29 (60)
T 2aus_D 17 KETCPVCGEKTKV 29 (60)
T ss_dssp SSBCTTTCSBCEE
T ss_pred cccCcCCCCccCC
Confidence 5579999987654
No 257
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.60 E-value=21 Score=18.56 Aligned_cols=41 Identities=17% Similarity=0.481 Sum_probs=23.9
Q ss_pred cCCCcCCCCCCceE-EEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 18 TAPGACPFCGGMIR-AMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 18 ~ApG~Cp~CGG~v~-a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
.-|-.|+.||-... ..++....+. ....+.|.|..|++...
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~------h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRT------HTGEKPYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTT------TCCSCSEECSSSCCEES
T ss_pred CCCEECCCCCcccCCHHHHHHHHHH------cCCCcCeeCCCCCCccC
Confidence 34667999986543 1222222221 22356799999998764
No 258
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.50 E-value=27 Score=20.31 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=8.6
Q ss_pred ccCCCcCCCCCCceE
Q 046214 17 QTAPGACPFCGGMIR 31 (66)
Q Consensus 17 ~~ApG~Cp~CGG~v~ 31 (66)
++..-.|..||..+.
T Consensus 18 ~~v~Y~C~~Cg~~~~ 32 (63)
T 3h0g_L 18 ATMIYLCADCGARNT 32 (63)
T ss_dssp -CCCCBCSSSCCBCC
T ss_pred CCeEEECCCCCCeee
Confidence 455566777766543
No 259
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.20 E-value=7.4 Score=24.63 Aligned_cols=18 Identities=22% Similarity=0.384 Sum_probs=9.8
Q ss_pred eeccCCCcCCCCCCceEE
Q 046214 15 GTQTAPGACPFCGGMIRA 32 (66)
Q Consensus 15 ~~~~ApG~Cp~CGG~v~a 32 (66)
|+.+....|..||..|..
T Consensus 1 ~~~~~~~~C~~C~~~I~~ 18 (169)
T 2rgt_A 1 GSTPEIPMCAGCDQHILD 18 (169)
T ss_dssp ------CBBSSSSSBCCS
T ss_pred CCCCCCCccccCCCccCC
Confidence 455666789999988863
No 260
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=26.12 E-value=15 Score=21.75 Aligned_cols=9 Identities=33% Similarity=1.383 Sum_probs=6.3
Q ss_pred EEeecccce
Q 046214 54 FYCTVCARR 62 (66)
Q Consensus 54 ~~Ct~C~r~ 62 (66)
..||||||.
T Consensus 19 ~~CSFCGK~ 27 (67)
T 1ovx_A 19 LYCSFCGKS 27 (67)
T ss_dssp CCCTTTCCC
T ss_pred cEecCCCCC
Confidence 358888864
No 261
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=26.06 E-value=22 Score=18.62 Aligned_cols=14 Identities=29% Similarity=1.051 Sum_probs=10.3
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 60 ~~~~~C~~C~~~f~ 73 (90)
T 1a1h_A 60 EKPFACDICGRKFA 73 (90)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCccCCCCCchhC
Confidence 45688888887654
No 262
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=25.88 E-value=17 Score=24.68 Aligned_cols=28 Identities=29% Similarity=0.685 Sum_probs=17.7
Q ss_pred CCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccce
Q 046214 19 APGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARR 62 (66)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~ 62 (66)
....|+.||.... | -.+..++|..|+..
T Consensus 9 ~~~~Cw~C~~~~~-------------~---~~~~~~fC~~c~~~ 36 (207)
T 3bvo_A 9 NYPRCWNCGGPWG-------------P---GREDRFFCPQCRAL 36 (207)
T ss_dssp --CBCSSSCCBCC-------------S---SCSCCCBCTTTCCB
T ss_pred CCCCCCCCCCCcc-------------c---cccccccccccccc
Confidence 4678999997642 1 13566778888753
No 263
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.84 E-value=30 Score=20.38 Aligned_cols=37 Identities=24% Similarity=0.601 Sum_probs=22.2
Q ss_pred CCcCCCCCCceEEEE--ec---eeeEEEEEeeeeeeccEEEeecccceee
Q 046214 20 PGACPFCGGMIRAMD--VQ---SEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 20 pG~Cp~CGG~v~a~D--ve---s~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
+..|+.||.++...| |+ ..|. -...=|.|+.|++.|.
T Consensus 63 ~~~C~~C~~~I~~~~~~~~a~~~~~H--------~~~~CF~C~~C~~~l~ 104 (126)
T 2xqn_T 63 AVVCQGCHNAIDPEVQRVTYNNFSWH--------ASTECFLCSCCSKCLI 104 (126)
T ss_dssp CCBCTTTCSBCCTTSCEEEETTEEEE--------SSTTTSBCTTTCCBCT
T ss_pred CccCcccCCcCCcCceEEECCCCEee--------CCCCCcCcCCCCCccC
Confidence 457999999988432 21 2221 1144567888887764
No 264
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.63 E-value=6.9 Score=18.59 Aligned_cols=13 Identities=15% Similarity=0.879 Sum_probs=7.8
Q ss_pred ccEEEeeccccee
Q 046214 51 KRKFYCTVCARRL 63 (66)
Q Consensus 51 krk~~Ct~C~r~L 63 (66)
.+.|.|..|++..
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytt_A 10 EKPYQCSECGKSF 22 (46)
T ss_dssp CCTTCCSSSCCCC
T ss_pred CCCeeCCCCCccc
Confidence 3456677776654
No 265
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=25.46 E-value=42 Score=23.25 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=21.8
Q ss_pred cCCCCCCc-eEEEEeceeeEEE-EE------eeeeeeccEEEeeccccee
Q 046214 22 ACPFCGGM-IRAMDVQSEWRFC-FL------PLYFKTKRKFYCTVCARRL 63 (66)
Q Consensus 22 ~Cp~CGG~-v~a~Dves~~rfC-fl------P~~~k~krk~~Ct~C~r~L 63 (66)
.||-||+. ....|+..+---. |+ |.-.-..+-+.|..|+-..
T Consensus 14 ~C~~Cg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~ 63 (416)
T 4e2x_A 14 ACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQ 63 (416)
T ss_dssp ECTTTSCEEEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEE
T ss_pred cCCCCCCeeeeeeECCCCCccccCCChhhcCccceecceEEECCCCCcee
Confidence 69999998 2234443211111 11 2222234668899998543
No 266
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=25.44 E-value=12 Score=22.34 Aligned_cols=17 Identities=29% Similarity=0.469 Sum_probs=13.5
Q ss_pred eeeeeccCCCcCCCCCC
Q 046214 12 RVLGTQTAPGACPFCGG 28 (66)
Q Consensus 12 kv~~~~~ApG~Cp~CGG 28 (66)
|+.-+|.+.-.||.||.
T Consensus 19 kie~~q~~ky~C~fCgk 35 (73)
T 1ffk_W 19 DVEIKHKKKYKCPVCGF 35 (73)
T ss_pred HHHHhcccCccCCCCCC
Confidence 34457889999999986
No 267
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=24.61 E-value=20 Score=25.78 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=19.1
Q ss_pred eeeeccCCCcCC--CCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccce
Q 046214 13 VLGTQTAPGACP--FCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARR 62 (66)
Q Consensus 13 v~~~~~ApG~Cp--~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~ 62 (66)
|-++..-| |+ +||+.+.-..+. ....|+|+.|-+.
T Consensus 242 vygR~g~p--C~~~~CG~~I~~~~~~-------------gR~t~~CP~CQ~~ 278 (310)
T 3twl_A 242 FHNREKKP--GKAFVDGKKIDFITAG-------------GRTTAYVPELQKL 278 (310)
T ss_dssp GGGTTSCT--TSCEETTEECEECCE-------------------ECTTTCCC
T ss_pred EeCcCCCC--CCCCCCCCeEEEEEEC-------------CcccEECCCCcCC
Confidence 33443334 66 999988766554 3566778877653
No 268
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=24.40 E-value=31 Score=23.13 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=18.4
Q ss_pred CCCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccce
Q 046214 19 APGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARR 62 (66)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~ 62 (66)
..-+||.|.-+|. |... ..|.|..|++.
T Consensus 41 ~Y~ACp~CnKKV~--~~~~--------------g~~~CekC~~~ 68 (172)
T 3u50_C 41 YYYRCTCQGKSVL--KYHG--------------DSFFCESCQQF 68 (172)
T ss_dssp EEEECTTSCCCEE--EETT--------------TEEEETTTTEE
T ss_pred EehhchhhCCEee--eCCC--------------CeEECCCCCCC
Confidence 3567888888875 2222 46778888764
No 269
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.29 E-value=28 Score=20.64 Aligned_cols=14 Identities=14% Similarity=0.408 Sum_probs=11.6
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.||+...
T Consensus 48 ekpf~C~~Cgk~F~ 61 (102)
T 2ghf_A 48 NSSYVCVECNFLTK 61 (102)
T ss_dssp SCCEEETTTTEEES
T ss_pred CCCcCCCCCCcccC
Confidence 56799999998764
No 270
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.24 E-value=29 Score=17.11 Aligned_cols=15 Identities=13% Similarity=0.301 Sum_probs=11.1
Q ss_pred eccEEEeec--ccceee
Q 046214 50 TKRKFYCTV--CARRLV 64 (66)
Q Consensus 50 ~krk~~Ct~--C~r~L~ 64 (66)
..+.|.|+. |++...
T Consensus 6 gekp~~C~~~~C~k~F~ 22 (38)
T 2eln_A 6 SGILLKCPTDGCDYSTP 22 (38)
T ss_dssp CCCCEECSSSSCCCEES
T ss_pred CCCCCCCCCCCCCCccC
Confidence 457899986 988754
No 271
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=24.01 E-value=25 Score=18.03 Aligned_cols=14 Identities=21% Similarity=0.740 Sum_probs=9.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|..|++...
T Consensus 55 ~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 55 EKPHKCQVCGKAFS 68 (82)
T ss_dssp CCCEECTTTSCEES
T ss_pred CCCCcCCCcchhhC
Confidence 45688888887653
No 272
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=23.86 E-value=26 Score=18.29 Aligned_cols=14 Identities=36% Similarity=0.859 Sum_probs=9.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 63 ~~~~~C~~C~~~f~ 76 (89)
T 2wbs_A 63 HRPFQCQKCDRAFS 76 (89)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCccCCCCCcccC
Confidence 45688888887653
No 273
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.86 E-value=20 Score=18.84 Aligned_cols=19 Identities=32% Similarity=0.796 Sum_probs=14.0
Q ss_pred CCCcCCCCCCceEEEEece
Q 046214 19 APGACPFCGGMIRAMDVQS 37 (66)
Q Consensus 19 ApG~Cp~CGG~v~a~Dves 37 (66)
....||.|+..+..-|+..
T Consensus 42 ~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 42 GAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TSSSCTTTCCCCSSCCCEE
T ss_pred CCCcCCCCCCcccccccee
Confidence 3568999999887666544
No 274
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=23.72 E-value=14 Score=20.20 Aligned_cols=13 Identities=46% Similarity=1.150 Sum_probs=6.5
Q ss_pred eccEEEeecccce
Q 046214 50 TKRKFYCTVCARR 62 (66)
Q Consensus 50 ~krk~~Ct~C~r~ 62 (66)
.++.|.|..|++.
T Consensus 14 ~~~~~~C~~C~~~ 26 (106)
T 2ee8_A 14 TKKEFICKFCGRH 26 (106)
T ss_dssp CCCCCBCSSSCCB
T ss_pred CCcCeECCCCCCc
Confidence 3444555555544
No 275
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=23.44 E-value=29 Score=22.89 Aligned_cols=14 Identities=14% Similarity=0.498 Sum_probs=11.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.++++|+.||..|-
T Consensus 96 ~~r~FC~~CGs~l~ 109 (196)
T 1x6m_A 96 IQRHRCRDCGVHMY 109 (196)
T ss_dssp EEEEEETTTCCEEE
T ss_pred eeeEECCCCCCcCC
Confidence 47899999998873
No 276
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=23.30 E-value=65 Score=21.01 Aligned_cols=17 Identities=47% Similarity=1.032 Sum_probs=13.4
Q ss_pred CCCcCCCCCCceEEEEe
Q 046214 19 APGACPFCGGMIRAMDV 35 (66)
Q Consensus 19 ApG~Cp~CGG~v~a~Dv 35 (66)
..+.||.||+....++-
T Consensus 102 ~~~~c~~~g~~~~~~e~ 118 (166)
T 3ir9_A 102 AAGNCPKCGSSLEVTDV 118 (166)
T ss_dssp CCCBCTTTCCBEEEEEE
T ss_pred ccccccccCccchhhhH
Confidence 45689999999877653
No 277
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=23.23 E-value=29 Score=18.47 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=8.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 62 ~~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 62 ERPFKCQICPYASR 75 (96)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCccCCCCCCccC
Confidence 45577777776543
No 278
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.11 E-value=34 Score=17.69 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=11.4
Q ss_pred ccEEEeecccceeee
Q 046214 51 KRKFYCTVCARRLVV 65 (66)
Q Consensus 51 krk~~Ct~C~r~L~~ 65 (66)
+--|.|+.|-+.|.+
T Consensus 3 ~EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 3 SEGFICPQCMKSLGS 17 (34)
T ss_dssp SEEEECTTTCCEESS
T ss_pred CcccCCcHHHHHcCC
Confidence 456899999888764
No 279
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.03 E-value=29 Score=23.60 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=12.8
Q ss_pred eccEEEeecccceeee
Q 046214 50 TKRKFYCTVCARRLVV 65 (66)
Q Consensus 50 ~krk~~Ct~C~r~L~~ 65 (66)
.+.-+.|+.|||.|+.
T Consensus 219 ~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 219 SGDMITCPYCGRILYA 234 (256)
T ss_dssp SSSCEECTTTCCEEEC
T ss_pred CCCEEECCCCCeeEEe
Confidence 3556999999999874
No 280
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.75 E-value=15 Score=21.80 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCcCCCCCCceEEEEeceeeEEEEEeeeeee--ccEEEeecccceee
Q 046214 20 PGACPFCGGMIRAMDVQSEWRFCFLPLYFKT--KRKFYCTVCARRLV 64 (66)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~--krk~~Ct~C~r~L~ 64 (66)
...|+.||-+|....+ |-.--++ ..=|.|+.|++.|.
T Consensus 3 ~~~C~~C~~~I~~~~~--------~~a~~~~wH~~CF~C~~C~~~L~ 41 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYF--------LKAIDQYWHEDCLSCDLCGCRLG 41 (114)
T ss_dssp CBCBSSSCSCBCSSEE--------EECSSSEECTTTCCCSSSCSCCC
T ss_pred CCCCcCCCCeeCCcEE--------EEECchhHHHhcCcccccCCchh
Confidence 4579999998873321 1111222 34588999999885
No 281
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.65 E-value=10 Score=20.22 Aligned_cols=38 Identities=18% Similarity=0.525 Sum_probs=21.7
Q ss_pred CCcCCCCCCceEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 20 PGACPFCGGMIRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 20 pG~Cp~CGG~v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
...|+.||-.|.+-.|+ .+--.| +..=|.|+.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~------a~~~~~-H~~CF~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGIT------YQDQPW-HADCFVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCEE------ETTEEE-CTTTTBCTTTCCBCT
T ss_pred cCCCcccCCEeCcceEE------ECcccc-ccCcCEECCCCCCCC
Confidence 35799999888531111 111112 234467888888774
No 282
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=22.32 E-value=33 Score=25.22 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=9.4
Q ss_pred CCcCCCCCCceE
Q 046214 20 PGACPFCGGMIR 31 (66)
Q Consensus 20 pG~Cp~CGG~v~ 31 (66)
+-.||.|||.+.
T Consensus 171 ~P~Cp~Cgg~lr 182 (361)
T 1q14_A 171 FVKCDVCGELVK 182 (361)
T ss_dssp CCBCTTTCCBEE
T ss_pred CCCCcCCCCEeC
Confidence 358999999763
No 283
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=22.22 E-value=27 Score=20.38 Aligned_cols=14 Identities=36% Similarity=0.963 Sum_probs=10.0
Q ss_pred CCCcCCCCCCceEE
Q 046214 19 APGACPFCGGMIRA 32 (66)
Q Consensus 19 ApG~Cp~CGG~v~a 32 (66)
..|.||||=-...+
T Consensus 27 p~gqCPYC~~~~e~ 40 (57)
T 2k9h_A 27 INGQCPYCMTITEA 40 (57)
T ss_dssp TTTBCTTTCCBCCS
T ss_pred CCCCCCcccCcCCc
Confidence 46999999665443
No 284
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=22.14 E-value=57 Score=23.08 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=19.4
Q ss_pred cCCCCCCc--eEEEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 22 ACPFCGGM--IRAMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 22 ~Cp~CGG~--v~a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
.||.||+. -.+.|-++.-. +|+.||-.|.
T Consensus 23 ~CPECGs~~t~IV~D~erGE~--------------VCsdCGLVLE 53 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDV--------------VCALCGLVLS 53 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEE--------------EETTTCBBCC
T ss_pred ECcCCCCcCCeEEEeCCCCEE--------------EEcCCCCCcC
Confidence 79999993 35667666544 4567776553
No 285
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.02 E-value=32 Score=15.18 Aligned_cols=14 Identities=36% Similarity=0.963 Sum_probs=9.9
Q ss_pred ccEEEee--cccceee
Q 046214 51 KRKFYCT--VCARRLV 64 (66)
Q Consensus 51 krk~~Ct--~C~r~L~ 64 (66)
.+.|.|. .|++...
T Consensus 4 ~k~~~C~~~~C~k~f~ 19 (38)
T 1bhi_A 4 DKPFLCTAPGCGQRFT 19 (38)
T ss_dssp CCCEECCCTTTCCEES
T ss_pred CcceECCCCCCCcccC
Confidence 3568888 4888754
No 286
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=21.91 E-value=25 Score=22.39 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.7
Q ss_pred CCcCCCCCCceEEEE
Q 046214 20 PGACPFCGGMIRAMD 34 (66)
Q Consensus 20 pG~Cp~CGG~v~a~D 34 (66)
.-.||+||-.|+|.-
T Consensus 70 ~~~C~nC~R~vaa~R 84 (99)
T 3mhs_C 70 YIHCENCGRDVSANR 84 (99)
T ss_dssp EEECTTTCCEEEGGG
T ss_pred eEECCCCCCCchhhh
Confidence 346999999998753
No 287
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.85 E-value=31 Score=18.31 Aligned_cols=14 Identities=29% Similarity=0.864 Sum_probs=10.7
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.+.|.|+.|++...
T Consensus 33 ~~~~~C~~C~~~f~ 46 (95)
T 2yt9_A 33 EKPYSCPVCGLRFK 46 (95)
T ss_dssp SCSEECSSSCCEES
T ss_pred CCCCcCCCCCCccC
Confidence 46788999988764
No 288
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=21.80 E-value=21 Score=21.90 Aligned_cols=7 Identities=57% Similarity=1.763 Sum_probs=6.1
Q ss_pred cCCCCCC
Q 046214 22 ACPFCGG 28 (66)
Q Consensus 22 ~Cp~CGG 28 (66)
.||+||.
T Consensus 37 ~CPnCgs 43 (81)
T 3p8b_A 37 RCPVCGS 43 (81)
T ss_dssp SCTTTCC
T ss_pred CCCCCCC
Confidence 4999997
No 289
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=21.56 E-value=35 Score=23.33 Aligned_cols=8 Identities=38% Similarity=0.982 Sum_probs=7.1
Q ss_pred CcCCCCCC
Q 046214 21 GACPFCGG 28 (66)
Q Consensus 21 G~Cp~CGG 28 (66)
-.||.|||
T Consensus 148 p~C~~Cgg 155 (253)
T 1ma3_A 148 PRCRKCGS 155 (253)
T ss_dssp CCCTTTCC
T ss_pred CCCCCCCC
Confidence 48999999
No 290
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.48 E-value=27 Score=20.02 Aligned_cols=38 Identities=21% Similarity=0.562 Sum_probs=20.6
Q ss_pred CcCCCCCCceE-EEEeceeeEEEEEeeeeeeccEEEeecccceee
Q 046214 21 GACPFCGGMIR-AMDVQSEWRFCFLPLYFKTKRKFYCTVCARRLV 64 (66)
Q Consensus 21 G~Cp~CGG~v~-a~Dves~~rfCflP~~~k~krk~~Ct~C~r~L~ 64 (66)
-.|+.||-.-. ..+++...|. .-..+.|.|..|++...
T Consensus 29 h~C~~Cgk~F~~~~~L~~H~~~------H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQERHLRL------LHAAQVFPCKYCPATFY 67 (85)
T ss_dssp EECTTSCCEESSHHHHHHHHHT------TSCSSSEECTTSSCEES
T ss_pred EECCCCCCCcCcHHHHhhhhhh------ccCCCccCCCCCCCEeC
Confidence 36888885432 2223222221 12346788999988753
No 291
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=21.25 E-value=36 Score=24.43 Aligned_cols=12 Identities=17% Similarity=0.670 Sum_probs=9.2
Q ss_pred CCcCCCCCCceE
Q 046214 20 PGACPFCGGMIR 31 (66)
Q Consensus 20 pG~Cp~CGG~v~ 31 (66)
.-.||.|||.+.
T Consensus 185 ~P~C~~Cgg~lr 196 (323)
T 1j8f_A 185 TPKCEDCQSLVK 196 (323)
T ss_dssp CCBCTTTCCBEE
T ss_pred CCCCcCCCCccC
Confidence 348999999653
No 292
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.24 E-value=36 Score=15.79 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=10.2
Q ss_pred ccEEEee--cccceee
Q 046214 51 KRKFYCT--VCARRLV 64 (66)
Q Consensus 51 krk~~Ct--~C~r~L~ 64 (66)
.+.|.|+ .|++...
T Consensus 10 ~k~~~C~~~~C~k~f~ 25 (48)
T 2ent_A 10 EKPFACTWPGCGWRFS 25 (48)
T ss_dssp CCCEECCSSSCCCEES
T ss_pred CCCeECCCCCCCCccC
Confidence 4678888 7887654
No 293
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=21.16 E-value=27 Score=22.29 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=6.7
Q ss_pred cEEEeecccce
Q 046214 52 RKFYCTVCARR 62 (66)
Q Consensus 52 rk~~Ct~C~r~ 62 (66)
.+|.|++||+.
T Consensus 35 aky~CpfCgk~ 45 (103)
T 4a17_Y 35 AKYGCPFCGKV 45 (103)
T ss_dssp SCEECTTTCCE
T ss_pred cCCCCCCCCCc
Confidence 45666666643
No 294
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=20.91 E-value=28 Score=19.79 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=9.8
Q ss_pred ccEEEeecccceee
Q 046214 51 KRKFYCTVCARRLV 64 (66)
Q Consensus 51 krk~~Ct~C~r~L~ 64 (66)
.++|.|..|++...
T Consensus 72 ~~~~~C~~C~k~f~ 85 (129)
T 2wbt_A 72 ISQFVCPLCLMPFS 85 (129)
T ss_dssp HCSEECTTTCCEES
T ss_pred CCCeECCCCCcccC
Confidence 35688888887653
No 295
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=20.62 E-value=43 Score=26.85 Aligned_cols=15 Identities=33% Similarity=0.910 Sum_probs=12.6
Q ss_pred cCCCcCCCCCCceEE
Q 046214 18 TAPGACPFCGGMIRA 32 (66)
Q Consensus 18 ~ApG~Cp~CGG~v~a 32 (66)
..|-.||.||..+.-
T Consensus 403 ~~P~~CP~Cgs~l~~ 417 (671)
T 2owo_A 403 VFPTHCPVCGSDVER 417 (671)
T ss_dssp CCCSBCTTTCCBEEE
T ss_pred cCCCCCCCCCCEeEE
Confidence 478999999998863
No 296
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=20.46 E-value=29 Score=20.71 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=12.7
Q ss_pred eeeeccCCCcCCCCCCc
Q 046214 13 VLGTQTAPGACPFCGGM 29 (66)
Q Consensus 13 v~~~~~ApG~Cp~CGG~ 29 (66)
+--+|.+.-.||.||..
T Consensus 19 ie~~q~~ky~C~fCgk~ 35 (72)
T 3jyw_9 19 LEIQQHARYDCSFCGKK 35 (72)
T ss_dssp HHHHHHSCBCCSSCCSS
T ss_pred HHHHhccCccCCCCCCc
Confidence 34467788899999865
No 297
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.24 E-value=29 Score=21.26 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=13.3
Q ss_pred eeeeccCCCcCCCCCCc
Q 046214 13 VLGTQTAPGACPFCGGM 29 (66)
Q Consensus 13 v~~~~~ApG~Cp~CGG~ 29 (66)
+--+|.+.-.||.||..
T Consensus 28 ie~~q~~ky~CpfCGk~ 44 (83)
T 3j21_i 28 VEAKMRQKHTCPVCGRK 44 (83)
T ss_dssp HHHHHHSCBCCSSSCSS
T ss_pred HHHHhhcccCCCCCCCc
Confidence 33467888999999976
Done!