BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046217
MDDSRRNKYGQSSDEIPEPPPPTRQYFEPQQPAPFPPLPPAMGYPPAMGYPPGYRNGYDQ
QHYQQGPPPSPDMYYAPPHCPHQDPGPPSSFAILTTMMLFVFFTFIVGLVLMFLIARPKF
PIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSH
FDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAW
SQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGKLNGKSKDCVVDL

High Scoring Gene Products

Symbol, full name Information P value
AT3G52460 protein from Arabidopsis thaliana 2.4e-24
AT2G27260 protein from Arabidopsis thaliana 7.9e-14

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046217
        (288 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079974 - symbol:AT3G52460 "AT3G52460" species...   248  2.4e-24   2
TAIR|locus:2039632 - symbol:AT2G27260 "AT2G27260" species...   179  7.9e-14   1


>TAIR|locus:2079974 [details] [associations]
            symbol:AT3G52460 "AT3G52460" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AL050300 IPI:IPI00528033 PIR:T08453 RefSeq:NP_190814.1
            UniGene:At.53904 PRIDE:Q9SVC7 EnsemblPlants:AT3G52460.1
            GeneID:824411 KEGG:ath:AT3G52460 TAIR:At3g52460 eggNOG:NOG313614
            HOGENOM:HOG000091110 InParanoid:Q9SVC7 OMA:ISTTITW PhylomeDB:Q9SVC7
            ProtClustDB:CLSN2684771 Genevestigator:Q9SVC7 Uniprot:Q9SVC7
        Length = 300

 Score = 248 (92.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 64/181 (35%), Positives = 94/181 (51%)

Query:   111 LMFLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYF 170
             + +L+ RP+ P+F V   +V+NF+V    F++ W  NL +EN+N     +FDRIQ  +Y 
Sbjct:   126 ITWLVLRPQIPLFSVNNFSVSNFNVTGPVFSAQWTANLTIENQNTKLKGYFDRIQGLVYH 185

Query:   171 NT----DDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIR 226
                   D+ LA++ F  P   V V+  +   I   L+  D +Q  P     V++EM+  R
Sbjct:   186 QNAVGEDEFLATAFFQ-P---VFVETKKSVVIGETLTAGDKEQ--PKVPSWVVDEMKKER 239

Query:   227 ETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGK-LNGKSKDCV 285
             ETG V FSLR   W   +T  +      +  ++ C  LKV FEG +GNG  L  K   CV
Sbjct:   240 ETGTVTFSLRMAVWVTFKTDGWAARESGL--KVFCGKLKVGFEGISGNGAVLLPKPLPCV 297

Query:   286 V 286
             V
Sbjct:   298 V 298

 Score = 45 (20.9 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query:    10 GQSSD-EIPEPPPPTRQ 25
             GQ+S+ +I +PPPP  Q
Sbjct:    18 GQNSERDINQPPPPPPQ 34


>TAIR|locus:2039632 [details] [associations]
            symbol:AT2G27260 "AT2G27260" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA]
            InterPro:IPR004864 GO:GO:0009506 EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC006233 Pfam:PF03168 EMBL:AF325072
            EMBL:AY049301 EMBL:AY093756 IPI:IPI00519153 PIR:G84670
            RefSeq:NP_565642.1 UniGene:At.13628 ProteinModelPortal:Q9XIN3
            PaxDb:Q9XIN3 PRIDE:Q9XIN3 EnsemblPlants:AT2G27260.1 GeneID:817268
            KEGG:ath:AT2G27260 TAIR:At2g27260 eggNOG:NOG313634
            HOGENOM:HOG000090343 InParanoid:Q9XIN3 OMA:TRRRVMR PhylomeDB:Q9XIN3
            ProtClustDB:CLSN2713610 ArrayExpress:Q9XIN3 Genevestigator:Q9XIN3
            Uniprot:Q9XIN3
        Length = 243

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 53/181 (29%), Positives = 91/181 (50%)

Query:   108 GLVLM--FLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQ 165
             GL+L   FLI RP+ P  ++ +L+V+NF+V+N+  +  W++ L   N N   ++H++   
Sbjct:    74 GLILFIFFLIVRPQLPDVNLNSLSVSNFNVSNNQVSGKWDLQLQFRNPNSKMSLHYETAL 133

Query:   166 SFIYFNTDDLLAS--SHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMR 223
               +Y+N   L  +    FD   KD TV  N   T+ +  +  D +  V + GK      R
Sbjct:   134 CAMYYNRVSLSETRLQPFDQGKKDQTV-VN--ATLSVSGTYVDGRL-VDSIGKE-----R 184

Query:   224 NIRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGKLNGKSKD 283
             +++  G V F LR  ++     G F    +++   + C+D+ V     +G GK+ G SK 
Sbjct:   185 SVK--GNVEFDLRMISYVTFRYGAF-RRRRYVT--VYCDDVAVGVPVSSGEGKMVGSSKR 239

Query:   284 C 284
             C
Sbjct:   240 C 240


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      288       225   0.00077  113 3  11 22  0.40    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  191 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.35u 0.08s 19.43t   Elapsed:  00:00:01
  Total cpu time:  19.35u 0.08s 19.43t   Elapsed:  00:00:01
  Start:  Sat May 11 01:46:39 2013   End:  Sat May 11 01:46:40 2013

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