BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046217
         (288 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
          Length = 402

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 23/146 (15%)

Query: 133 FSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKA 192
            S   D+    W++         G +VH D I S  +     L+ +S  D   K V V  
Sbjct: 148 LSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD---KRVRVIE 204

Query: 193 NEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFA-WSQIETGLFYTE 251
             KGT+   ++  D       P   V      I  TG    S R  A W          +
Sbjct: 205 PRKGTV---VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW----------D 251

Query: 252 TKHIQSRIICEDLKVHFEGDTGNGKL 277
           TKH++  +  ++L      DT +G L
Sbjct: 252 TKHLEEPLSLQEL------DTSSGVL 271


>pdb|4ES8|A Chain A, Crystal Structure Of The Adhesin Domain Of Epf From
           Streptococcus Pyogenes In P212121
 pdb|4ES8|B Chain B, Crystal Structure Of The Adhesin Domain Of Epf From
           Streptococcus Pyogenes In P212121
 pdb|4ES9|A Chain A, Crystal Structure Of The Adhesin Domain Of Epf From
           Streptococcus Pyogenes In P21
 pdb|4ES9|B Chain B, Crystal Structure Of The Adhesin Domain Of Epf From
           Streptococcus Pyogenes In P21
 pdb|4ES9|C Chain C, Crystal Structure Of The Adhesin Domain Of Epf From
           Streptococcus Pyogenes In P21
 pdb|4ES9|D Chain D, Crystal Structure Of The Adhesin Domain Of Epf From
           Streptococcus Pyogenes In P21
          Length = 320

 Score = 27.7 bits (60), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 241 SQIETGLFYTETKHIQSRIICEDLKVHFEGD 271
           SQ++ G+ Y   K++Q  +  +D + +FEGD
Sbjct: 218 SQLDKGVAYVGNKNVQLTLKSDDGRTNFEGD 248


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,113,479
Number of Sequences: 62578
Number of extensions: 241294
Number of successful extensions: 440
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 13
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)