BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046217
         (288 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q32L53|LFG1_BOVIN Protein lifeguard 1 OS=Bos taurus GN=GRINA PE=2 SV=1
          Length = 366

 Score = 33.9 bits (76), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 10  GQSSDEIPEPPPPTRQYFEPQQPAPFP-------PLPPAMGYP----PAMGYPPGYR--N 56
           G    + P  P P  Q   PQ P+P+P       P PP  GYP    P  GYP G     
Sbjct: 34  GAPYPQAPFQPSPYGQPGYPQGPSPYPQGGYPQGPYPPG-GYPQGPYPPGGYPQGPYPPG 92

Query: 57  GYDQQHYQQGPPPSPDMYYAPPHCPHQDPGPP 88
           GY Q  Y Q P P P+ Y  P   P QDPG P
Sbjct: 93  GYPQGPYPQSPFP-PNPYGQPQAFPAQDPGSP 123


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.138    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,904,994
Number of Sequences: 539616
Number of extensions: 6159356
Number of successful extensions: 38850
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 987
Number of HSP's that attempted gapping in prelim test: 25755
Number of HSP's gapped (non-prelim): 7446
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)