Query 046217
Match_columns 288
No_of_seqs 147 out of 721
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 4.7E-30 1E-34 230.7 25.6 178 87-287 33-216 (219)
2 PF03168 LEA_2: Late embryogen 99.2 4.9E-11 1.1E-15 92.7 9.4 98 147-262 1-100 (101)
3 smart00769 WHy Water Stress an 98.0 0.00011 2.4E-09 58.0 10.9 62 139-205 12-73 (100)
4 PF07092 DUF1356: Protein of u 97.9 0.0016 3.6E-08 59.4 17.9 83 117-204 97-181 (238)
5 PF12751 Vac7: Vacuolar segreg 96.5 0.0071 1.5E-07 58.7 7.0 40 139-180 345-384 (387)
6 KOG1924 RhoA GTPase effector D 96.2 0.013 2.9E-07 61.1 7.3 13 39-51 558-570 (1102)
7 COG5608 LEA14-like dessication 95.4 1.3 2.9E-05 38.0 15.1 80 119-207 31-110 (161)
8 KOG1924 RhoA GTPase effector D 94.5 0.07 1.5E-06 56.0 6.0 17 38-54 563-579 (1102)
9 KOG4849 mRNA cleavage factor I 94.1 0.19 4.2E-06 48.4 7.6 39 38-78 283-339 (498)
10 KOG2199 Signal transducing ada 89.9 0.67 1.4E-05 45.4 5.8 18 34-51 419-436 (462)
11 PF02162 XYPPX: XYPPX repeat ( 89.2 0.28 6E-06 25.8 1.4 9 31-39 5-13 (15)
12 COG5178 PRP8 U5 snRNP spliceos 84.5 0.7 1.5E-05 50.7 2.7 21 15-35 7-27 (2365)
13 PLN03160 uncharacterized prote 83.9 4.1 8.8E-05 36.8 7.1 81 83-167 33-126 (219)
14 TIGR02588 conserved hypothetic 74.6 35 0.00076 28.3 9.1 52 97-155 9-62 (122)
15 PF12868 DUF3824: Domain of un 67.1 17 0.00036 30.7 5.8 7 39-45 89-95 (137)
16 PF10907 DUF2749: Protein of u 59.1 11 0.00023 27.8 2.8 16 104-119 13-28 (66)
17 PRK13150 cytochrome c-type bio 59.1 1E+02 0.0022 26.7 9.3 40 143-182 77-116 (159)
18 PRK10893 lipopolysaccharide ex 59.0 47 0.001 29.3 7.5 38 117-155 37-74 (192)
19 KOG2893 Zn finger protein [Gen 57.5 27 0.00059 32.3 5.8 14 48-61 159-172 (341)
20 COG5178 PRP8 U5 snRNP spliceos 57.1 9.7 0.00021 42.4 3.2 23 37-59 11-33 (2365)
21 KOG2192 PolyC-binding hnRNP-K 55.8 17 0.00038 34.1 4.3 8 30-37 236-243 (390)
22 PF02124 Marek_A: Marek's dise 54.6 31 0.00067 31.2 5.6 19 96-115 190-208 (211)
23 COG2332 CcmE Cytochrome c-type 53.5 1.5E+02 0.0032 25.6 9.2 40 143-182 71-110 (153)
24 PF11322 DUF3124: Protein of u 53.4 72 0.0016 26.6 7.1 60 136-201 17-76 (125)
25 KOG3950 Gamma/delta sarcoglyca 52.6 78 0.0017 29.5 7.8 21 139-159 105-125 (292)
26 PF05399 EVI2A: Ectropic viral 48.1 1.4E+02 0.003 27.2 8.6 11 172-184 176-186 (227)
27 PF03302 VSP: Giardia variant- 47.4 12 0.00025 36.9 1.9 28 92-119 369-396 (397)
28 PF03100 CcmE: CcmE; InterPro 45.1 28 0.0006 28.8 3.6 37 145-181 72-108 (131)
29 KOG2893 Zn finger protein [Gen 43.8 70 0.0015 29.7 6.1 23 47-69 148-171 (341)
30 KOG4849 mRNA cleavage factor I 42.9 1.4E+02 0.003 29.3 8.3 8 29-36 221-228 (498)
31 PF15145 DUF4577: Domain of un 41.0 18 0.00038 29.6 1.7 26 92-118 63-88 (128)
32 PF10873 DUF2668: Protein of u 40.9 68 0.0015 27.5 5.2 11 38-48 119-129 (155)
33 KOG1923 Rac1 GTPase effector F 40.3 1E+02 0.0022 33.1 7.4 23 17-39 280-302 (830)
34 PF13179 DUF4006: Family of un 39.6 23 0.00051 26.2 2.0 27 87-113 4-33 (66)
35 PF06024 DUF912: Nucleopolyhed 38.8 40 0.00086 26.7 3.4 25 92-117 63-88 (101)
36 PF05170 AsmA: AsmA family; I 36.5 1.8E+02 0.0039 29.6 8.6 95 120-240 439-534 (604)
37 PF04478 Mid2: Mid2 like cell 36.2 22 0.00048 30.6 1.7 24 99-123 59-82 (154)
38 COG1580 FliL Flagellar basal b 36.1 1.4E+02 0.0029 25.8 6.5 8 109-116 35-42 (159)
39 PF09624 DUF2393: Protein of u 35.5 1.6E+02 0.0034 24.4 6.8 56 109-172 34-91 (149)
40 PF06092 DUF943: Enterobacteri 34.9 24 0.00053 30.4 1.7 18 100-118 11-28 (157)
41 PF08113 CoxIIa: Cytochrome c 34.2 19 0.00041 23.1 0.7 15 99-114 10-24 (34)
42 PF07787 DUF1625: Protein of u 34.2 28 0.00061 31.7 2.1 10 109-118 239-248 (248)
43 PRK13159 cytochrome c-type bio 33.8 1.4E+02 0.003 25.8 6.1 37 146-182 74-110 (155)
44 PRK05529 cell division protein 33.8 56 0.0012 30.1 4.0 43 120-163 58-128 (255)
45 PRK06531 yajC preprotein trans 33.7 19 0.00042 29.3 0.9 10 111-120 15-24 (113)
46 PF01708 Gemini_mov: Geminivir 33.1 30 0.00066 27.1 1.8 7 72-78 15-21 (91)
47 PF01102 Glycophorin_A: Glycop 32.8 13 0.00027 30.8 -0.4 26 101-127 75-101 (122)
48 PF05568 ASFV_J13L: African sw 32.4 23 0.00049 30.4 1.1 39 92-130 30-68 (189)
49 PF14927 Neurensin: Neurensin 32.4 41 0.00089 28.5 2.6 22 93-114 46-67 (140)
50 PF12877 DUF3827: Domain of un 32.2 40 0.00087 35.3 3.0 37 87-124 266-302 (684)
51 PF04046 PSP: PSP; InterPro: 31.5 25 0.00054 24.4 1.0 7 49-55 31-37 (48)
52 PRK07021 fliL flagellar basal 31.1 1.3E+02 0.0027 25.7 5.6 14 159-172 78-91 (162)
53 PHA03164 hypothetical protein; 30.4 44 0.00095 25.5 2.2 21 87-107 54-75 (88)
54 COG4698 Uncharacterized protei 30.2 41 0.00089 29.8 2.3 22 109-130 27-48 (197)
55 PF11837 DUF3357: Domain of un 29.3 18 0.00039 28.9 0.0 24 87-111 24-48 (106)
56 PRK13254 cytochrome c-type bio 28.7 1.8E+02 0.0039 24.8 6.0 39 144-182 71-109 (148)
57 PTZ00382 Variant-specific surf 28.4 33 0.00071 27.0 1.3 15 102-117 78-93 (96)
58 PF02009 Rifin_STEVOR: Rifin/s 28.3 20 0.00043 34.1 0.1 11 106-117 270-280 (299)
59 COG5353 Uncharacterized protei 28.3 45 0.00098 28.7 2.2 23 96-119 12-34 (161)
60 KOG2375 Protein interacting wi 27.9 1.4E+02 0.003 32.0 6.1 28 22-51 558-585 (756)
61 PF11395 DUF2873: Protein of u 27.5 24 0.00052 23.3 0.3 9 109-117 25-33 (43)
62 PF12606 RELT: Tumour necrosis 27.3 25 0.00055 24.6 0.4 30 96-126 5-34 (50)
63 PF06667 PspB: Phage shock pro 26.9 21 0.00045 27.1 -0.0 9 109-117 17-25 (75)
64 PF06072 Herpes_US9: Alphaherp 26.7 14 0.00031 26.8 -0.9 11 104-114 49-59 (60)
65 PF11906 DUF3426: Protein of u 26.3 3.6E+02 0.0079 22.0 8.6 59 123-182 48-107 (149)
66 PF14155 DUF4307: Domain of un 26.0 3.5E+02 0.0075 21.7 12.9 38 109-152 19-57 (112)
67 PF15012 DUF4519: Domain of un 26.0 73 0.0016 22.8 2.6 11 109-119 46-56 (56)
68 COG1589 FtsQ Cell division sep 26.0 57 0.0012 30.1 2.7 33 100-133 38-70 (269)
69 KOG0119 Splicing factor 1/bran 25.5 1.8E+02 0.0038 29.8 6.1 17 39-55 440-458 (554)
70 PF06637 PV-1: PV-1 protein (P 24.9 43 0.00092 33.0 1.6 15 139-153 83-97 (442)
71 PF10164 DUF2367: Uncharacteri 24.5 1.8E+02 0.0039 23.2 4.8 19 89-107 62-81 (98)
72 PF02468 PsbN: Photosystem II 24.4 81 0.0018 21.4 2.5 23 95-118 7-29 (43)
73 KOG0810 SNARE protein Syntaxin 23.8 53 0.0012 31.2 2.1 8 92-99 272-279 (297)
74 cd01324 cbb3_Oxidase_CcoQ Cyto 23.5 38 0.00083 23.3 0.8 12 109-120 24-35 (48)
75 PF12355 Dscam_C: Down syndrom 23.4 54 0.0012 26.7 1.7 10 15-24 61-70 (124)
76 KOG1923 Rac1 GTPase effector F 23.1 2.7E+02 0.0058 30.1 7.1 8 111-118 374-381 (830)
77 KOG2322 N-methyl-D-aspartate r 22.7 1.1E+02 0.0023 28.3 3.7 16 88-103 44-60 (237)
78 PHA03269 envelope glycoprotein 22.6 1.7E+02 0.0037 30.0 5.3 21 96-117 543-563 (566)
79 PF04881 Adeno_GP19K: Adenovir 22.4 57 0.0012 27.3 1.7 25 92-120 106-130 (139)
80 PF05545 FixQ: Cbb3-type cytoc 21.9 34 0.00074 23.2 0.3 12 109-120 23-34 (49)
81 PF06835 LptC: Lipopolysacchar 21.9 4E+02 0.0087 21.7 6.9 49 120-170 32-80 (176)
82 PHA03271 envelope glycoprotein 21.6 2E+02 0.0044 28.9 5.5 17 99-116 464-480 (490)
83 KOG3294 WW domain binding prot 21.4 3.3E+02 0.0071 25.4 6.5 11 16-26 172-182 (261)
84 PRK13183 psbN photosystem II r 21.3 91 0.002 21.5 2.2 22 96-118 11-32 (46)
85 KOG0811 SNARE protein PEP12/VA 21.2 43 0.00094 31.4 0.9 23 94-117 246-268 (269)
86 PF04790 Sarcoglycan_1: Sarcog 20.9 45 0.00098 31.1 1.0 18 139-156 83-100 (264)
87 CHL00020 psbN photosystem II p 20.7 1E+02 0.0022 20.9 2.3 22 96-118 8-29 (43)
88 PF01034 Syndecan: Syndecan do 20.0 35 0.00075 25.1 0.0 15 103-118 22-36 (64)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=99.97 E-value=4.7e-30 Score=230.72 Aligned_cols=178 Identities=15% Similarity=0.251 Sum_probs=142.3
Q ss_pred CCCcE-EehhHHHHHHHHHHHHHHheeeEEeecCCCEEEEeeEEEeeeecCC-----CCceeEEEEEEEEEeCCCeeeEE
Q 046217 87 PPSSF-AILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFSVAN-----DDFTSAWEINLVVENRNFGANVH 160 (288)
Q Consensus 87 ~r~~~-~l~~~li~lvlllgii~~lIlwLvlrPk~P~f~V~s~svs~fnvs~-----~~L~a~l~~~Lsv~NPN~k~~i~ 160 (288)
+|+|+ ||+++++++++|++++ +.++|++||||+|+|+|++++|++|++++ ..+|++++++++++|||. ++|+
T Consensus 33 r~~~~~c~~~~~a~~l~l~~v~-~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~ 110 (219)
T PLN03160 33 RRNCIKCCGCITATLLILATTI-LVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFK 110 (219)
T ss_pred cccceEEHHHHHHHHHHHHHHH-HheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEE
Confidence 44555 5545554555555555 88999999999999999999999999864 257888899999999999 8999
Q ss_pred EcceEEEEEECCceeeeEeeecCCCcceEecCCceEEEEEEEEeccccccCCCCChHHHHHHHhhhcCCeEEEEEEEEEE
Q 046217 161 FDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAW 240 (288)
Q Consensus 161 Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v~v~l~~~~~~~~~~~l~~~~~~~l~~d~~~G~V~~~v~v~~r 240 (288)
|+++++.++|+|+ .+|++.+| + |+|++++++.+++++.....+ .+. ..+|.+|.++|.++|+++++.+
T Consensus 111 Y~~~~~~v~Y~g~-~vG~a~~p-~---g~~~ar~T~~l~~tv~~~~~~----~~~---~~~L~~D~~~G~v~l~~~~~v~ 178 (219)
T PLN03160 111 YSNTTTTIYYGGT-VVGEARTP-P---GKAKARRTMRMNVTVDIIPDK----ILS---VPGLLTDISSGLLNMNSYTRIG 178 (219)
T ss_pred EcCeEEEEEECCE-EEEEEEcC-C---cccCCCCeEEEEEEEEEEece----ecc---chhHHHHhhCCeEEEEEEEEEE
Confidence 9999999999887 89999999 8 999999999999998766542 122 2468889999999999877777
Q ss_pred EEEEEeEEEEccceeEEEEEeCceEEeeeCCCCCcccccCCCCceec
Q 046217 241 SQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGKLNGKSKDCVVD 287 (288)
Q Consensus 241 vr~kvG~~~t~~~~~~~~v~C~~l~V~l~~~~~~G~l~~~~~~C~v~ 287 (288)
.+.++|.+++ +++.++++|+ +.|.+.+ .. .+..+|+.+
T Consensus 179 gkVkv~~i~k--~~v~~~v~C~-v~V~~~~----~~--i~~~~C~~~ 216 (219)
T PLN03160 179 GKVKILKIIK--KHVVVKMNCT-MTVNITS----QA--IQGQKCKRH 216 (219)
T ss_pred EEEEEEEEEE--EEEEEEEEeE-EEEECCC----CE--EeccEeccc
Confidence 7777777766 8999999999 8886622 22 245569865
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.24 E-value=4.9e-11 Score=92.72 Aligned_cols=98 Identities=20% Similarity=0.348 Sum_probs=70.6
Q ss_pred EEEEEeCCCeeeEEEcceEEEEEECCceeee-EeeecCCCcceEecCCceEEEEEEEEeccccccCCCCChHHHHHHHhh
Q 046217 147 NLVVENRNFGANVHFDRIQSFIYFNTDDLLA-SSHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNI 225 (288)
Q Consensus 147 ~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg-~a~vp~p~~~F~q~~k~tt~v~v~l~~~~~~~~~~~l~~~~~~~l~~d 225 (288)
+|+++|||. ++++|+++++.++|+|. .+| ....+ + |.|++++++.+.+.+..+.. .+ .+.+.++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~-~v~~~~~~~-~---~~i~~~~~~~v~~~v~~~~~-----~l----~~~l~~~ 65 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQ-RVGTGGSLP-P---FTIPARSSTTVPVPVSVDYS-----DL----PRLLKDL 65 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSS-EEEEEEECE-----EEESSSCEEEEEEEEEEEHH-----HH----HHHHHHH
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCE-EEECccccC-C---eEECCCCcEEEEEEEEEcHH-----HH----HHHHHhh
Confidence 589999999 99999999999999887 788 55566 7 99999999999998887654 22 4556666
Q ss_pred hcCCeEEEEEEEEEEEEEEE-eEEEEccceeEEEEEeC
Q 046217 226 RETGVVPFSLRAFAWSQIET-GLFYTETKHIQSRIICE 262 (288)
Q Consensus 226 ~~~G~V~~~v~v~~rvr~kv-G~~~t~~~~~~~~v~C~ 262 (288)
. +|...+++.++++.++++ +.+.. ++..+.++|+
T Consensus 66 ~-~~~~~~~v~~~~~g~~~v~~~~~~--~~~~v~~~~~ 100 (101)
T PF03168_consen 66 L-AGRVPFDVTYRIRGTFKVLGTPIF--GSVRVPVSCE 100 (101)
T ss_dssp H-HTTSCEEEEEEEEEEEE-EE-TTT--SCEEEEEEEE
T ss_pred h-ccccceEEEEEEEEEEEEccccee--eeEEEeEEeE
Confidence 6 556666666777777774 43333 4555555554
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=97.98 E-value=0.00011 Score=57.97 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=56.4
Q ss_pred CceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceEEEEEEEEec
Q 046217 139 DFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTA 205 (288)
Q Consensus 139 ~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v~v~l~~~ 205 (288)
.++.++.+.|.+.|||. +.+.++.++..++++|. .+|++..+.+ +..++++++.+.+.+..+
T Consensus 12 ~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~-~v~~g~~~~~---~~ipa~~~~~v~v~~~~~ 73 (100)
T smart00769 12 GLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGV-ELGSGEIPDS---GTLPGNGRTVLDVPVTVN 73 (100)
T ss_pred ceEEEEEEEEEEECCCC-CccccccEEEEEEECCE-EEEEEEcCCC---cEECCCCcEEEEEEEEee
Confidence 56789999999999999 99999999999999886 8999998646 999999999999998884
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.88 E-value=0.0016 Score=59.36 Aligned_cols=83 Identities=10% Similarity=0.127 Sum_probs=60.9
Q ss_pred ecCCCEEEEeeEEEee--eecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCc
Q 046217 117 RPKFPIFHVETLAVTN--FSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANE 194 (288)
Q Consensus 117 rPk~P~f~V~s~svs~--fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~ 194 (288)
-||.-.++-.++.... |+-.++.+..+++-.|.++|+|. ..+...++.+.+.|... .+|.+... . ....++++
T Consensus 97 fPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~-VVG~~~~~-~--~~~I~Prs 171 (238)
T PF07092_consen 97 FPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKT-VVGKGKNS-N--ITVIGPRS 171 (238)
T ss_pred eCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEe-EEeeeEec-c--eEEecccC
Confidence 4776444433333222 33344568899999999999999 99999999999999765 89988776 3 26788888
Q ss_pred eEEEEEEEEe
Q 046217 195 KGTIDIKLST 204 (288)
Q Consensus 195 tt~v~v~l~~ 204 (288)
.+.+..++..
T Consensus 172 ~~q~~~tV~t 181 (238)
T PF07092_consen 172 SKQVNYTVKT 181 (238)
T ss_pred CceEEEEeeE
Confidence 8877776665
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=96.50 E-value=0.0071 Score=58.65 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=32.6
Q ss_pred CceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEee
Q 046217 139 DFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSH 180 (288)
Q Consensus 139 ~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~ 180 (288)
.--.-|++++.+.|||. +.|..++.++.|+-+.. .+++-.
T Consensus 345 ~qELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~-yvg~D~ 384 (387)
T PF12751_consen 345 EQELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSR-YVGTDS 384 (387)
T ss_pred cceEEEeeEEEEECCCe-EEEEeccceeeeEecCC-ccCccc
Confidence 34567889999999999 99999999999998775 555543
No 6
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.18 E-value=0.013 Score=61.07 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCCC
Q 046217 39 PPAMGYPPAMGYP 51 (288)
Q Consensus 39 ~~~~~~~~~~~~~ 51 (288)
||+++-|+-+|-|
T Consensus 558 PPPpplPg~aG~P 570 (1102)
T KOG1924|consen 558 PPPPPLPGIAGGP 570 (1102)
T ss_pred ccCCCCCcccCCC
Confidence 4445555555544
No 7
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=95.41 E-value=1.3 Score=38.02 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=60.7
Q ss_pred CCCEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceEEE
Q 046217 119 KFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTI 198 (288)
Q Consensus 119 k~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v 198 (288)
+.|.+.--.+..-... .....+-.++.++|||. +.|-...++..++-++ ..+|.+....+ +..++++..++
T Consensus 31 ~~p~ve~~ka~wGkvt----~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~-Iki~eG~~~k~---~~v~p~S~~tv 101 (161)
T COG5608 31 KKPGVESMKAKWGKVT----NSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMND-IKIGEGEILKG---TTVPPNSRETV 101 (161)
T ss_pred CCCCceEEEEEEEEEe----ccceEEEEEEEecCCCC-cceeeeceEEEEEEcc-eEeeccccccc---eEECCCCeEEE
Confidence 3454444444443332 23467889999999999 9999999999998866 58999987645 99999999999
Q ss_pred EEEEEeccc
Q 046217 199 DIKLSTADY 207 (288)
Q Consensus 199 ~v~l~~~~~ 207 (288)
++.+..+..
T Consensus 102 dv~l~~d~~ 110 (161)
T COG5608 102 DVPLRLDNS 110 (161)
T ss_pred EEEEEEehH
Confidence 999887654
No 8
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.53 E-value=0.07 Score=55.97 Aligned_cols=17 Identities=47% Similarity=0.731 Sum_probs=7.2
Q ss_pred CCCCCCCCCCCCCCCCC
Q 046217 38 LPPAMGYPPAMGYPPGY 54 (288)
Q Consensus 38 ~~~~~~~~~~~~~~~~~ 54 (288)
.|+-+|-||.-+.|||.
T Consensus 563 lPg~aG~PPpPppppg~ 579 (1102)
T KOG1924|consen 563 LPGIAGGPPPPPPPPGG 579 (1102)
T ss_pred CCcccCCCCccCCCCCC
Confidence 33344444444444443
No 9
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.13 E-value=0.19 Score=48.38 Aligned_cols=39 Identities=44% Similarity=0.686 Sum_probs=23.6
Q ss_pred CCCCCCCCCC---------CCCCCCCCCCCCccc--cCCCCCC-------CCCccccCC
Q 046217 38 LPPAMGYPPA---------MGYPPGYRNGYDQQH--YQQGPPP-------SPDMYYAPP 78 (288)
Q Consensus 38 ~~~~~~~~~~---------~~~~~~~~~~~~~~~--~~~~p~~-------~~~~y~~~~ 78 (288)
.+|+||.||- ||.|||-++ +.-| .++.||| +|+|||.-.
T Consensus 283 p~pp~~~ppRP~m~l~phl~gppPga~p--Paph~NpaffpPP~~~s~GppP~~~~~~~ 339 (498)
T KOG4849|consen 283 PQPPMGQPPRPMMQLSPHLMGPPPGAGP--PAPHNNPAFFPPPQLGSMGPPPQMNTAMR 339 (498)
T ss_pred CCCCCCCCCCcccccCcccCCCCCCCCC--CCcccCcccCCCCCcCcCCCCCCCccCCC
Confidence 4666677766 677777653 2223 4555555 569999654
No 10
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=89.91 E-value=0.67 Score=45.44 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 046217 34 PFPPLPPAMGYPPAMGYP 51 (288)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~ 51 (288)
||+.+|-.++|.|+.+|+
T Consensus 419 Pp~~~~~~p~~~~q~~Y~ 436 (462)
T KOG2199|consen 419 PPNSNPATPQQQPQLSYS 436 (462)
T ss_pred CCccCCCCCCCCcccccc
Confidence 555566667788888887
No 11
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=89.22 E-value=0.28 Score=25.78 Aligned_cols=9 Identities=33% Similarity=0.316 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 046217 31 QPAPFPPLP 39 (288)
Q Consensus 31 ~~~~~~~~~ 39 (288)
|++|||.+|
T Consensus 5 qG~pPQ~~P 13 (15)
T PF02162_consen 5 QGYPPQGYP 13 (15)
T ss_pred cCCCCCCCC
Confidence 333333333
No 12
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=84.47 E-value=0.7 Score=50.74 Aligned_cols=21 Identities=43% Similarity=0.872 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 046217 15 EIPEPPPPTRQYFEPQQPAPF 35 (288)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ 35 (288)
+-|.||||+|+|-||+||+||
T Consensus 7 g~ppppppppg~epps~pppP 27 (2365)
T COG5178 7 GNPPPPPPPPGFEPPSQPPPP 27 (2365)
T ss_pred CCCcccccCCCCCCCCCCCCc
Confidence 347888888888888875543
No 13
>PLN03160 uncharacterized protein; Provisional
Probab=83.90 E-value=4.1 Score=36.81 Aligned_cols=81 Identities=10% Similarity=0.093 Sum_probs=48.8
Q ss_pred CCCCCCCcEEehhHHHHHHHHHHHHHHheeeEEeecC--CCEEEEeeEEEee-------eecCC----CCceeEEEEEEE
Q 046217 83 QDPGPPSSFAILTTMMLFVFFTFIVGLVLMFLIARPK--FPIFHVETLAVTN-------FSVAN----DDFTSAWEINLV 149 (288)
Q Consensus 83 ~~~~~r~~~~l~~~li~lvlllgii~~lIlwLvlrPk--~P~f~V~s~svs~-------fnvs~----~~L~a~l~~~Ls 149 (288)
++.+-++|.|+|+++++++++++++ +++++-.=.|+ .-.++|+++.++. +|++- ..-|-|. +.+.
T Consensus 33 r~~~~~c~~~~~a~~l~l~~v~~~l-~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~ 110 (219)
T PLN03160 33 RRNCIKCCGCITATLLILATTILVL-VFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFK 110 (219)
T ss_pred cccceEEHHHHHHHHHHHHHHHHhe-eeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEE
Confidence 3556778888888888877777777 66666656664 4556666666532 23221 0123444 4444
Q ss_pred EEeCCCeeeEEEcceEEE
Q 046217 150 VENRNFGANVHFDRIQSF 167 (288)
Q Consensus 150 v~NPN~k~~i~Yd~~~~~ 167 (288)
.. |..+.++|+...+.
T Consensus 111 Y~--~~~~~v~Y~g~~vG 126 (219)
T PLN03160 111 YS--NTTTTIYYGGTVVG 126 (219)
T ss_pred Ec--CeEEEEEECCEEEE
Confidence 43 45578888776553
No 14
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=74.63 E-value=35 Score=28.27 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHheeeE--EeecCCCEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCC
Q 046217 97 MMLFVFFTFIVGLVLMFL--IARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNF 155 (288)
Q Consensus 97 li~lvlllgii~~lIlwL--vlrPk~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~ 155 (288)
.+.++++++++ .+++|. .-+.+.|.+++......+-. ...+-+-++++|--.
T Consensus 9 ~Is~~ill~vi-glv~y~~l~~~~~pp~l~v~~~~~~r~~------~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 9 GISTLILAAMF-GLVAYDWLRYSNKAAVLEVAPAEVERMQ------TGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHH-HHHHHHhhccCCCCCeEEEeehheeEEe------CCEEEEEEEEEeCCC
Confidence 33445555555 555554 45678899998887665421 234666677777655
No 15
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=67.06 E-value=17 Score=30.73 Aligned_cols=7 Identities=57% Similarity=1.279 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 046217 39 PPAMGYP 45 (288)
Q Consensus 39 ~~~~~~~ 45 (288)
++...||
T Consensus 89 ~~~~~~p 95 (137)
T PF12868_consen 89 PPPPPYP 95 (137)
T ss_pred CCCCCCC
Confidence 3333333
No 16
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=59.14 E-value=11 Score=27.85 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=12.1
Q ss_pred HHHHHHheeeEEeecC
Q 046217 104 TFIVGLVLMFLIARPK 119 (288)
Q Consensus 104 lgii~~lIlwLvlrPk 119 (288)
+++.+..+.|++++|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4444478899999998
No 17
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=59.08 E-value=1e+02 Score=26.72 Aligned_cols=40 Identities=8% Similarity=0.247 Sum_probs=28.1
Q ss_pred EEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeec
Q 046217 143 AWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFD 182 (288)
Q Consensus 143 ~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp 182 (288)
.+.+.+.+..-+..+.+.|+.+-=.++=.|+..++++.+.
T Consensus 77 ~~~v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~~ 116 (159)
T PRK13150 77 SLKVNFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTLE 116 (159)
T ss_pred CcEEEEEEEcCCcEEEEEEeccCCccccCCCeEEEEEEEC
Confidence 4556666666677788888877666666666677777775
No 18
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=59.05 E-value=47 Score=29.34 Aligned_cols=38 Identities=5% Similarity=0.029 Sum_probs=25.7
Q ss_pred ecCCCEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCC
Q 046217 117 RPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNF 155 (288)
Q Consensus 117 rPk~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~ 155 (288)
.++.|.|.+++++...|+.. +.++..++..=.-+=|+.
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~-G~l~y~l~a~~~~Hy~~~ 74 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE-GALSYKLVAQHVEYYSDQ 74 (192)
T ss_pred CCCCCCEEEeccEEEEECCC-CCEEEEEEecceEEcCCC
Confidence 46789999999999999875 355555554443333444
No 19
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=57.47 E-value=27 Score=32.34 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCCcc
Q 046217 48 MGYPPGYRNGYDQQ 61 (288)
Q Consensus 48 ~~~~~~~~~~~~~~ 61 (288)
|-.|+|||+|-.+-
T Consensus 159 ~ppp~g~pp~~~pg 172 (341)
T KOG2893|consen 159 YPPPRGYPPAPAPG 172 (341)
T ss_pred CCCCCCCCCCCCCc
Confidence 33334555444333
No 20
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=57.12 E-value=9.7 Score=42.43 Aligned_cols=23 Identities=35% Similarity=0.701 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 046217 37 PLPPAMGYPPAMGYPPGYRNGYD 59 (288)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~ 59 (288)
|.||++||-|..+.||-||+||+
T Consensus 11 ppppppg~epps~pppPppPg~~ 33 (2365)
T COG5178 11 PPPPPPGFEPPSQPPPPPPPGVN 33 (2365)
T ss_pred ccccCCCCCCCCCCCCccCCCcc
Confidence 35677788777788888889986
No 21
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=55.81 E-value=17 Score=34.15 Aligned_cols=8 Identities=38% Similarity=0.455 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 046217 30 QQPAPFPP 37 (288)
Q Consensus 30 ~~~~~~~~ 37 (288)
-|++|+++
T Consensus 236 gqgpp~~~ 243 (390)
T KOG2192|consen 236 GQGPPPPR 243 (390)
T ss_pred CCCCCCCC
Confidence 34444444
No 22
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=54.62 E-value=31 Score=31.24 Aligned_cols=19 Identities=5% Similarity=-0.115 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHheeeEE
Q 046217 96 TMMLFVFFTFIVGLVLMFLI 115 (288)
Q Consensus 96 ~li~lvlllgii~~lIlwLv 115 (288)
++++.++++|++ ++|+-+.
T Consensus 190 ~Vi~g~~~~g~~-~~i~alc 208 (211)
T PF02124_consen 190 GVICGAGALGLL-VLIAALC 208 (211)
T ss_pred HHHHHHHHHHHH-HhhEEEE
Confidence 555556666655 5554443
No 23
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=53.55 E-value=1.5e+02 Score=25.57 Aligned_cols=40 Identities=15% Similarity=0.347 Sum_probs=29.4
Q ss_pred EEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeec
Q 046217 143 AWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFD 182 (288)
Q Consensus 143 ~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp 182 (288)
.+++.+.+.--|.++.|.|.-+-=.++=.|+..++++.+.
T Consensus 71 ~~~v~F~vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~~~ 110 (153)
T COG2332 71 SLKVSFVVTDGNKSVTVSYEGILPDLFREGQGVVAEGQLQ 110 (153)
T ss_pred CcEEEEEEecCCceEEEEEeccCchhhhcCCeEEEEEEec
Confidence 4555556667788888999887777777777778888775
No 24
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=53.38 E-value=72 Score=26.55 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=40.6
Q ss_pred CCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceEEEEEE
Q 046217 136 ANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIK 201 (288)
Q Consensus 136 s~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v~v~ 201 (288)
.+.....+|+++|++||.+.+-.|.-.+++ +|+.+-.+-...+..| ...++-.+..+-+.
T Consensus 17 ~~~~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~P---i~L~Pl~t~~~vV~ 76 (125)
T PF11322_consen 17 GNKHRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKP---IYLKPLATTEFVVE 76 (125)
T ss_pred cCCCceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCC---eEcCCCceEEEEEe
Confidence 344678899999999999987777765442 5544333444455556 77887777776543
No 25
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=52.62 E-value=78 Score=29.48 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=16.5
Q ss_pred CceeEEEEEEEEEeCCCeeeE
Q 046217 139 DFTSAWEINLVVENRNFGANV 159 (288)
Q Consensus 139 ~L~a~l~~~Lsv~NPN~k~~i 159 (288)
.+...=++++.+||||.++.=
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~ 125 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTG 125 (292)
T ss_pred EEEeccCeeEEccCCCCceee
Confidence 456677899999999997643
No 26
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=48.06 E-value=1.4e+02 Score=27.20 Aligned_cols=11 Identities=55% Similarity=0.588 Sum_probs=7.6
Q ss_pred CceeeeEeeecCC
Q 046217 172 TDDLLASSHFDHP 184 (288)
Q Consensus 172 g~~~lg~a~vp~p 184 (288)
|| +|++..++ |
T Consensus 176 GD-FLASSgLW-P 186 (227)
T PF05399_consen 176 GD-FLASSGLW-P 186 (227)
T ss_pred cc-eeeccccC-c
Confidence 44 77777777 5
No 27
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=47.44 E-value=12 Score=36.92 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=17.8
Q ss_pred EehhHHHHHHHHHHHHHHheeeEEeecC
Q 046217 92 AILTTMMLFVFFTFIVGLVLMFLIARPK 119 (288)
Q Consensus 92 ~l~~~li~lvlllgii~~lIlwLvlrPk 119 (288)
+.-+.+.++|++.||+++|.-|+|.|=|
T Consensus 369 IaGIsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 369 IAGISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred eeeeeehhHHHHHHHHHHHhhheeeccc
Confidence 3334555566777788666667777744
No 28
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=45.13 E-value=28 Score=28.79 Aligned_cols=37 Identities=3% Similarity=0.125 Sum_probs=16.7
Q ss_pred EEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeee
Q 046217 145 EINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHF 181 (288)
Q Consensus 145 ~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~v 181 (288)
.+++.+..-+..+.+.|+..-=..+=.++..+.++.+
T Consensus 72 ~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~VVv~G~~ 108 (131)
T PF03100_consen 72 TLTFTITDGGKEIPVVYTGPLPDLFREGQGVVVEGRL 108 (131)
T ss_dssp EEEEEEE-SS-EEEEEEES--CTT--TTSEEEEEEEE
T ss_pred EEEEEEEECCcEEEEEECCCCCccccCCCeEEEEEEE
Confidence 4444455556667777755433333344445555555
No 29
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=43.77 E-value=70 Score=29.73 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCCccc-cCCCCCC
Q 046217 47 AMGYPPGYRNGYDQQH-YQQGPPP 69 (288)
Q Consensus 47 ~~~~~~~~~~~~~~~~-~~~~p~~ 69 (288)
.|+.|+|-|..|++-- |++|++|
T Consensus 148 ~~~~p~gmp~~~ppp~g~pp~~~p 171 (341)
T KOG2893|consen 148 GMMPPRGMPGAYPPPRGYPPAPAP 171 (341)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Confidence 3444455444444333 4444433
No 30
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=42.86 E-value=1.4e+02 Score=29.31 Aligned_cols=8 Identities=50% Similarity=0.567 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 046217 29 PQQPAPFP 36 (288)
Q Consensus 29 ~~~~~~~~ 36 (288)
.+|-.|-+
T Consensus 221 ~~Q~~P~P 228 (498)
T KOG4849|consen 221 MQQVRPTP 228 (498)
T ss_pred cccCCCCC
Confidence 34443333
No 31
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=41.00 E-value=18 Score=29.63 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=15.8
Q ss_pred EehhHHHHHHHHHHHHHHheeeEEeec
Q 046217 92 AILTTMMLFVFFTFIVGLVLMFLIARP 118 (288)
Q Consensus 92 ~l~~~li~lvlllgii~~lIlwLvlrP 118 (288)
.+...++++++-++++ .|++||+++-
T Consensus 63 ffvglii~LivSLaLV-sFvIFLiiQT 88 (128)
T PF15145_consen 63 FFVGLIIVLIVSLALV-SFVIFLIIQT 88 (128)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHheeec
Confidence 3444455555666666 7777777653
No 32
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=40.93 E-value=68 Score=27.46 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=4.8
Q ss_pred CCCCCCCCCCC
Q 046217 38 LPPAMGYPPAM 48 (288)
Q Consensus 38 ~~~~~~~~~~~ 48 (288)
|---|.|++-+
T Consensus 119 y~~e~~~~~d~ 129 (155)
T PF10873_consen 119 YDHEMEYPPDL 129 (155)
T ss_pred ccccccccCCC
Confidence 44444444444
No 33
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=40.32 E-value=1e+02 Score=33.05 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 046217 17 PEPPPPTRQYFEPQQPAPFPPLP 39 (288)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~ 39 (288)
++|||+.+...-+++.++|.|.|
T Consensus 280 s~ppppap~p~~~~~~a~p~p~~ 302 (830)
T KOG1923|consen 280 SGPPPPAPLPHTAQSDAAPSPLR 302 (830)
T ss_pred CCCCCCCCCCCcccccCCCCCCC
Confidence 34444445444555555444433
No 34
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=39.61 E-value=23 Score=26.20 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=17.1
Q ss_pred CCCcE---EehhHHHHHHHHHHHHHHheee
Q 046217 87 PPSSF---AILTTMMLFVFFTFIVGLVLMF 113 (288)
Q Consensus 87 ~r~~~---~l~~~li~lvlllgii~~lIlw 113 (288)
.|+.| .+...+++.++++++++.|-+|
T Consensus 4 ~r~~f~LnGi~G~LIAvvLLLsIl~~lt~~ 33 (66)
T PF13179_consen 4 NRSVFGLNGITGMLIAVVLLLSILAFLTYW 33 (66)
T ss_pred ccceeeecchHhHHHHHHHHHHHHHHHHHH
Confidence 46666 6666677777777777344344
No 35
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=38.81 E-value=40 Score=26.71 Aligned_cols=25 Identities=24% Similarity=0.576 Sum_probs=12.4
Q ss_pred EehhHHHHHHHHHHHHHHheeeEE-ee
Q 046217 92 AILTTMMLFVFFTFIVGLVLMFLI-AR 117 (288)
Q Consensus 92 ~l~~~li~lvlllgii~~lIlwLv-lr 117 (288)
+++.+++++++++.++ .+|.|.+ +|
T Consensus 63 iili~lls~v~IlVil-y~IyYFVILR 88 (101)
T PF06024_consen 63 IILISLLSFVCILVIL-YAIYYFVILR 88 (101)
T ss_pred chHHHHHHHHHHHHHH-hhheEEEEEe
Confidence 4444555555444444 4444554 55
No 36
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=36.51 E-value=1.8e+02 Score=29.64 Aligned_cols=95 Identities=11% Similarity=0.153 Sum_probs=49.9
Q ss_pred CCEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceEEEE
Q 046217 120 FPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTID 199 (288)
Q Consensus 120 ~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v~ 199 (288)
+-++++.++++.++.+++ +.+.+++ -+.+ +.-+.+.+.+ |+|. +-+.+.+. . ......++
T Consensus 439 ~~~l~~~~l~~~~l~i~~------~~~~~~~--~~G~--l~l~~l~~~l-~~G~-~~~~~~ld-~-------~~~~~~~~ 498 (604)
T PF05170_consen 439 DLTLSAGSLKANGLPISN------LKLQLKA--KDGL--LTLDPLSAKL-YGGS-LSGSASLD-A-------RQDPPQYS 498 (604)
T ss_pred eEEEEhhheEECCceecc------cEEEEEe--cCCe--EEEeeeeEec-CCcE-EEEEEEEe-c-------cCCCccEE
Confidence 445666666666666552 3333333 3333 3445666666 6565 55666655 2 23345566
Q ss_pred EEEEeccccccCCCCChHHHHHHHh-hhcCCeEEEEEEEEEE
Q 046217 200 IKLSTADYKQSVPAPGKRVMEEMRN-IRETGVVPFSLRAFAW 240 (288)
Q Consensus 200 v~l~~~~~~~~~~~l~~~~~~~l~~-d~~~G~V~~~v~v~~r 240 (288)
...++.++ .+.+-. ..+.. +.-.|...+++.++++
T Consensus 499 ~~~~~~~v-----~l~~Ll-~~~~~~~~l~G~~~~~~~l~g~ 534 (604)
T PF05170_consen 499 LNLNLRGV-----QLQPLL-QDLALPDPLSGTGDLNLDLTGQ 534 (604)
T ss_pred EeeeeCCc-----chHHHH-hhhccccCceEEEEEEEEEEeC
Confidence 66667666 443321 22222 3346666666666553
No 37
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=36.19 E-value=22 Score=30.56 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHheeeEEeecCCCEE
Q 046217 99 LFVFFTFIVGLVLMFLIARPKFPIF 123 (288)
Q Consensus 99 ~lvlllgii~~lIlwLvlrPk~P~f 123 (288)
...+|++++ +||+|+.+|.+.=.|
T Consensus 59 Gg~ill~il-~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 59 GGPILLGIL-ALVFIFCIRRKKTDF 82 (154)
T ss_pred cHHHHHHHH-HhheeEEEecccCcc
Confidence 345555666 778888888887443
No 38
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=36.11 E-value=1.4e+02 Score=25.83 Aligned_cols=8 Identities=0% Similarity=0.015 Sum_probs=5.1
Q ss_pred HheeeEEe
Q 046217 109 LVLMFLIA 116 (288)
Q Consensus 109 ~lIlwLvl 116 (288)
+.++|+..
T Consensus 35 ~~~~~~~~ 42 (159)
T COG1580 35 GYFFWFGS 42 (159)
T ss_pred HHHHhhhc
Confidence 66666665
No 39
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=35.52 E-value=1.6e+02 Score=24.42 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=33.6
Q ss_pred HheeeEEeec--CCCEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECC
Q 046217 109 LVLMFLIARP--KFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNT 172 (288)
Q Consensus 109 ~lIlwLvlrP--k~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g 172 (288)
.+++|.++.- +.+..++.+..- ++. +-.+.+..+++|-.+ ..+..=.+++.+..++
T Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~--l~~-----~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~ 91 (149)
T PF09624_consen 34 PFFGYYWLDKYLKKIELTLTSQKR--LQY-----SESFYVDGTVTNTGK-FTIKKCKITVKLYNDK 91 (149)
T ss_pred HHHHHHHHhhhcCCceEEEeeeee--eee-----ccEEEEEEEEEECCC-CEeeEEEEEEEEEeCC
Confidence 4445555443 456666555443 333 346888899999887 5566656666666633
No 40
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=34.88 E-value=24 Score=30.44 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=12.4
Q ss_pred HHHHHHHHHHheeeEEeec
Q 046217 100 FVFFTFIVGLVLMFLIARP 118 (288)
Q Consensus 100 lvlllgii~~lIlwLvlrP 118 (288)
.+++++++ +.++|+.+||
T Consensus 11 ~l~l~~~~-~y~~W~~~rp 28 (157)
T PF06092_consen 11 ALFLLACI-LYFLWLTLRP 28 (157)
T ss_pred HHHHHHHH-HHhhhhccCC
Confidence 34444545 4889999999
No 41
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=34.21 E-value=19 Score=23.10 Aligned_cols=15 Identities=7% Similarity=0.248 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHheeeE
Q 046217 99 LFVFFTFIVGLVLMFL 114 (288)
Q Consensus 99 ~lvlllgii~~lIlwL 114 (288)
.++.+++++ +|++|+
T Consensus 10 ~vv~iLt~~-ILvFWf 24 (34)
T PF08113_consen 10 GVVMILTAF-ILVFWF 24 (34)
T ss_dssp HHHHHHHHH-HHHHHH
T ss_pred eeHHHHHHH-HHHHHH
Confidence 445555666 677775
No 42
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=34.20 E-value=28 Score=31.73 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=8.4
Q ss_pred HheeeEEeec
Q 046217 109 LVLMFLIARP 118 (288)
Q Consensus 109 ~lIlwLvlrP 118 (288)
+.+.|+.+||
T Consensus 239 Ia~aW~~yRP 248 (248)
T PF07787_consen 239 IALAWLFYRP 248 (248)
T ss_pred HHHhheeeCc
Confidence 6778999987
No 43
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=33.82 E-value=1.4e+02 Score=25.82 Aligned_cols=37 Identities=14% Similarity=0.373 Sum_probs=21.1
Q ss_pred EEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeec
Q 046217 146 INLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFD 182 (288)
Q Consensus 146 ~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp 182 (288)
+.+.+.--+..+.+.|+-+-=.++=.|+..++++.+.
T Consensus 74 v~F~vtD~~~~v~V~Y~GilPDlFrEGqgVVaeG~~~ 110 (155)
T PRK13159 74 VSFTVIDKNAATQVEYTGILPDLFRDNQSVIANGRMQ 110 (155)
T ss_pred EEEEEEcCCcEEEEEEccCCCccccCCCeEEEEEEEc
Confidence 3334444455677777766555555555566665544
No 44
>PRK05529 cell division protein FtsQ; Provisional
Probab=33.81 E-value=56 Score=30.07 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=28.0
Q ss_pred CCEEEEeeEEEeeeecCC--------------C--------------CceeEEEEEEEEEeCCCeeeEEEcc
Q 046217 120 FPIFHVETLAVTNFSVAN--------------D--------------DFTSAWEINLVVENRNFGANVHFDR 163 (288)
Q Consensus 120 ~P~f~V~s~svs~fnvs~--------------~--------------~L~a~l~~~Lsv~NPN~k~~i~Yd~ 163 (288)
.|.|.|+++.|+.-...+ + .+-.-=+++++-+.||. +.|+..+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEE
Confidence 589999999997643110 1 11222367788889998 7777654
No 45
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=33.69 E-value=19 Score=29.34 Aligned_cols=10 Identities=30% Similarity=0.683 Sum_probs=6.8
Q ss_pred eeeEEeecCC
Q 046217 111 LMFLIARPKF 120 (288)
Q Consensus 111 IlwLvlrPk~ 120 (288)
++|+++||+.
T Consensus 15 i~yf~iRPQk 24 (113)
T PRK06531 15 LIFFMQRQQK 24 (113)
T ss_pred HHHheechHH
Confidence 3466799964
No 46
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=33.09 E-value=30 Score=27.13 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=3.4
Q ss_pred CccccCC
Q 046217 72 DMYYAPP 78 (288)
Q Consensus 72 ~~y~~~~ 78 (288)
..||-|.
T Consensus 15 ~~y~~P~ 21 (91)
T PF01708_consen 15 YSYQTPR 21 (91)
T ss_pred ccccCCC
Confidence 4455554
No 47
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.85 E-value=13 Score=30.85 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=9.6
Q ss_pred HHHHHHHHHheeeEEeec-CCCEEEEee
Q 046217 101 VFFTFIVGLVLMFLIARP-KFPIFHVET 127 (288)
Q Consensus 101 vlllgii~~lIlwLvlrP-k~P~f~V~s 127 (288)
+-++|+| +||+|++-|= |+....+..
T Consensus 75 aGvIg~I-lli~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 75 AGVIGII-LLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHH-HHHHHHHHHHS---------
T ss_pred HHHHHHH-HHHHHHHHHHhccCCCCCCC
Confidence 3345556 6666776542 444444443
No 48
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=32.38 E-value=23 Score=30.42 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=20.3
Q ss_pred EehhHHHHHHHHHHHHHHheeeEEeecCCCEEEEeeEEE
Q 046217 92 AILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAV 130 (288)
Q Consensus 92 ~l~~~li~lvlllgii~~lIlwLvlrPk~P~f~V~s~sv 130 (288)
-+|.+|+.+++++.+|.++|.|..-|=|+---.++...+
T Consensus 30 hm~tILiaIvVliiiiivli~lcssRKkKaaAAi~eedi 68 (189)
T PF05568_consen 30 HMYTILIAIVVLIIIIIVLIYLCSSRKKKAAAAIEEEDI 68 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhcc
Confidence 455555555544443427777776666544444444333
No 49
>PF14927 Neurensin: Neurensin
Probab=32.35 E-value=41 Score=28.51 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=14.6
Q ss_pred ehhHHHHHHHHHHHHHHheeeE
Q 046217 93 ILTTMMLFVFFTFIVGLVLMFL 114 (288)
Q Consensus 93 l~~~li~lvlllgii~~lIlwL 114 (288)
++.++-++++++|++++.+-|+
T Consensus 46 V~~i~g~l~Ll~Gi~~l~vgY~ 67 (140)
T PF14927_consen 46 VGFISGLLLLLLGIVALTVGYL 67 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3445556778888885666666
No 50
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=32.20 E-value=40 Score=35.34 Aligned_cols=37 Identities=16% Similarity=0.373 Sum_probs=20.7
Q ss_pred CCCcEEehhHHHHHHHHHHHHHHheeeEEeecCCCEEE
Q 046217 87 PPSSFAILTTMMLFVFFTFIVGLVLMFLIARPKFPIFH 124 (288)
Q Consensus 87 ~r~~~~l~~~li~lvlllgii~~lIlwLvlrPk~P~f~ 124 (288)
++..++|..+++-+++++.|| +++.|...|=++-.|.
T Consensus 266 ~~NlWII~gVlvPv~vV~~Ii-iil~~~LCRk~K~eFq 302 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLII-IILYWKLCRKNKLEFQ 302 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHH-HHHHHHHhcccccCCC
Confidence 334456666655555555555 6666666665544443
No 51
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=31.50 E-value=25 Score=24.42 Aligned_cols=7 Identities=86% Similarity=2.048 Sum_probs=4.6
Q ss_pred CCCCCCC
Q 046217 49 GYPPGYR 55 (288)
Q Consensus 49 ~~~~~~~ 55 (288)
||||||+
T Consensus 31 G~PP~y~ 37 (48)
T PF04046_consen 31 GYPPGYP 37 (48)
T ss_pred CCCCCCc
Confidence 6666664
No 52
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=31.15 E-value=1.3e+02 Score=25.67 Aligned_cols=14 Identities=0% Similarity=-0.190 Sum_probs=7.4
Q ss_pred EEEcceEEEEEECC
Q 046217 159 VHFDRIQSFIYFNT 172 (288)
Q Consensus 159 i~Yd~~~~~v~Y~g 172 (288)
.+|=.+++.+-+.+
T Consensus 78 ~rylkv~i~L~~~~ 91 (162)
T PRK07021 78 DRVLYVGLTLRLPD 91 (162)
T ss_pred ceEEEEEEEEEECC
Confidence 45555555555543
No 53
>PHA03164 hypothetical protein; Provisional
Probab=30.37 E-value=44 Score=25.52 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=10.8
Q ss_pred CCCcE-EehhHHHHHHHHHHHH
Q 046217 87 PPSSF-AILTTMMLFVFFTFIV 107 (288)
Q Consensus 87 ~r~~~-~l~~~li~lvlllgii 107 (288)
+|+.| .+..+.+++..|++++
T Consensus 54 rRktftFlvLtgLaIamILfii 75 (88)
T PHA03164 54 RRKTFTFLVLTGLAIAMILFII 75 (88)
T ss_pred hhheeehHHHHHHHHHHHHHHH
Confidence 45566 4444444555555554
No 54
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.23 E-value=41 Score=29.82 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=15.6
Q ss_pred HheeeEEeecCCCEEEEeeEEE
Q 046217 109 LVLMFLIARPKFPIFHVETLAV 130 (288)
Q Consensus 109 ~lIlwLvlrPk~P~f~V~s~sv 130 (288)
++|+..++.|+.+..++.+.+=
T Consensus 27 ~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 27 VLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHhheeeccCCCCCchhhccCc
Confidence 5666678899987777666543
No 55
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=29.30 E-value=18 Score=28.95 Aligned_cols=24 Identities=8% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCCcE-EehhHHHHHHHHHHHHHHhe
Q 046217 87 PPSSF-AILTTMMLFVFFTFIVGLVL 111 (288)
Q Consensus 87 ~r~~~-~l~~~li~lvlllgii~~lI 111 (288)
+|+.+ |+.++++.+++|+.++ +||
T Consensus 24 ~rR~~k~~~~i~~s~~~ll~lv-al~ 48 (106)
T PF11837_consen 24 RRRPLKCLAAIFSSLLFLLSLV-ALI 48 (106)
T ss_dssp --------------------------
T ss_pred cCCcchhHHHHHHHHHHHHHHH-HHH
Confidence 34434 6666666666666555 444
No 56
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=28.67 E-value=1.8e+02 Score=24.77 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=24.4
Q ss_pred EEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeec
Q 046217 144 WEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFD 182 (288)
Q Consensus 144 l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp 182 (288)
..+++.+.--+..+.+.|+..-=.++=.|+..+..+.+.
T Consensus 71 ~~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~~VVv~G~~~ 109 (148)
T PRK13254 71 LTVRFVVTDGNATVPVVYTGILPDLFREGQGVVAEGRLQ 109 (148)
T ss_pred CEEEEEEEeCCeEEEEEECCCCCccccCCCEEEEEEEEC
Confidence 344455555567788888766555555555577777765
No 57
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=28.37 E-value=33 Score=27.02 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=7.0
Q ss_pred HHHHHHHHheeeE-Eee
Q 046217 102 FFTFIVGLVLMFL-IAR 117 (288)
Q Consensus 102 lllgii~~lIlwL-vlr 117 (288)
++.+|+ .+++|+ ++|
T Consensus 78 ~v~~lv-~~l~w~f~~r 93 (96)
T PTZ00382 78 VVGGLV-GFLCWWFVCR 93 (96)
T ss_pred HHHHHH-HHHhheeEEe
Confidence 333445 444455 455
No 58
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=28.32 E-value=20 Score=34.14 Aligned_cols=11 Identities=36% Similarity=1.029 Sum_probs=7.9
Q ss_pred HHHHheeeEEee
Q 046217 106 IVGLVLMFLIAR 117 (288)
Q Consensus 106 ii~~lIlwLvlr 117 (288)
++ .+|+||+||
T Consensus 270 LI-MvIIYLILR 280 (299)
T PF02009_consen 270 LI-MVIIYLILR 280 (299)
T ss_pred HH-HHHHHHHHH
Confidence 45 678888875
No 59
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.31 E-value=45 Score=28.69 Aligned_cols=23 Identities=9% Similarity=0.410 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHheeeEEeecC
Q 046217 96 TMMLFVFFTFIVGLVLMFLIARPK 119 (288)
Q Consensus 96 ~li~lvlllgii~~lIlwLvlrPk 119 (288)
++++|+.|++.+ ++++|....|.
T Consensus 12 i~viflai~~s~-~~~~~~s~~P~ 34 (161)
T COG5353 12 ILVIFLAIILSI-ALFFWKSMKPY 34 (161)
T ss_pred HHHHHHHHHHHH-HHHHhHhcCcc
Confidence 334455555556 88899988884
No 60
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=27.86 E-value=1.4e+02 Score=32.03 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 046217 22 PTRQYFEPQQPAPFPPLPPAMGYPPAMGYP 51 (288)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (288)
+.++++-+.+..+++. ++|+|.|+||-+
T Consensus 558 ~~~~tp~q~~~~~~~~--~~~~~~P~~g~~ 585 (756)
T KOG2375|consen 558 PMAMTPFQNSQHNPPG--PVPGYNPQMGNP 585 (756)
T ss_pred cCCCCCCccccCCCCC--CCCCCCcccCCC
Confidence 3344444444443333 557777777666
No 61
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=27.50 E-value=24 Score=23.25 Aligned_cols=9 Identities=11% Similarity=0.538 Sum_probs=5.0
Q ss_pred HheeeEEee
Q 046217 109 LVLMFLIAR 117 (288)
Q Consensus 109 ~lIlwLvlr 117 (288)
++|+|.++.
T Consensus 25 liif~f~le 33 (43)
T PF11395_consen 25 LIIFWFSLE 33 (43)
T ss_pred HHHHHHHHh
Confidence 456666543
No 62
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=27.26 E-value=25 Score=24.57 Aligned_cols=30 Identities=3% Similarity=-0.088 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHheeeEEeecCCCEEEEe
Q 046217 96 TMMLFVFFTFIVGLVLMFLIARPKFPIFHVE 126 (288)
Q Consensus 96 ~li~lvlllgii~~lIlwLvlrPk~P~f~V~ 126 (288)
+++.+++++|++ .+.+|.+++=+.=+.+++
T Consensus 5 ~iV~i~iv~~lL-g~~I~~~~K~ygYkht~d 34 (50)
T PF12606_consen 5 LIVSIFIVMGLL-GLSICTTLKAYGYKHTVD 34 (50)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhccccccccC
Confidence 445556666666 555666666554444443
No 63
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=26.86 E-value=21 Score=27.06 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=5.1
Q ss_pred HheeeEEee
Q 046217 109 LVLMFLIAR 117 (288)
Q Consensus 109 ~lIlwLvlr 117 (288)
+..+||+++
T Consensus 17 Vap~WL~lH 25 (75)
T PF06667_consen 17 VAPIWLILH 25 (75)
T ss_pred HHHHHHHHH
Confidence 555666643
No 64
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=26.70 E-value=14 Score=26.75 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=5.8
Q ss_pred HHHHHHheeeE
Q 046217 104 TFIVGLVLMFL 114 (288)
Q Consensus 104 lgii~~lIlwL 114 (288)
.+++++++.|+
T Consensus 49 S~~lG~~~~~~ 59 (60)
T PF06072_consen 49 SGGLGALVAWH 59 (60)
T ss_pred HHHHHHHhhcc
Confidence 33445666665
No 65
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=26.26 E-value=3.6e+02 Score=22.02 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=38.9
Q ss_pred EEEeeEEEeeeecCC-CCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeec
Q 046217 123 FHVETLAVTNFSVAN-DDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFD 182 (288)
Q Consensus 123 f~V~s~svs~fnvs~-~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp 182 (288)
-.++.+++.+..+.. ..-+-.+.++.+++|... ....|-.++++++=.++..+++-.+.
T Consensus 48 ~~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~~ 107 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVPDGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVFT 107 (149)
T ss_pred cCcceEEEeeeeEEeecCCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEEC
Confidence 355555554443332 134677899999999988 77888899888873333367666663
No 66
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=26.03 E-value=3.5e+02 Score=21.70 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=16.6
Q ss_pred HheeeEEee-cCCCEEEEeeEEEeeeecCCCCceeEEEEEEEEEe
Q 046217 109 LVLMFLIAR-PKFPIFHVETLAVTNFSVANDDFTSAWEINLVVEN 152 (288)
Q Consensus 109 ~lIlwLvlr-Pk~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~N 152 (288)
+++.|+.+. -..+.++ ..+..|.+.+. .++++++.+.-
T Consensus 19 ~~~~w~~~~~~~~~~v~---~~~~gf~vv~d---~~v~v~f~Vtr 57 (112)
T PF14155_consen 19 AVVAWFGYSQFGSPPVS---AEVIGFEVVDD---STVEVTFDVTR 57 (112)
T ss_pred HHHhHhhhhhccCCCce---EEEEEEEECCC---CEEEEEEEEEE
Confidence 445555554 3444443 33444444321 23444444443
No 67
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=26.03 E-value=73 Score=22.85 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=8.4
Q ss_pred HheeeEEeecC
Q 046217 109 LVLMFLIARPK 119 (288)
Q Consensus 109 ~lIlwLvlrPk 119 (288)
++++|+.-||+
T Consensus 46 vv~vy~kTRP~ 56 (56)
T PF15012_consen 46 VVFVYLKTRPR 56 (56)
T ss_pred hheeEEeccCC
Confidence 67788888875
No 68
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=25.95 E-value=57 Score=30.10 Aligned_cols=33 Identities=18% Similarity=0.550 Sum_probs=25.2
Q ss_pred HHHHHHHHHHheeeEEeecCCCEEEEeeEEEeee
Q 046217 100 FVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNF 133 (288)
Q Consensus 100 lvlllgii~~lIlwLvlrPk~P~f~V~s~svs~f 133 (288)
+++++++. ++++|...-++.|.|.+..+.|++=
T Consensus 38 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~v~Gn 70 (269)
T COG1589 38 YLVLLLLV-LVVLWVLILLSLPYFPIRKVSVSGN 70 (269)
T ss_pred HHHHHHHH-HHHHheehhhhcCCccceEEEEecC
Confidence 34444445 6788888899999999999999764
No 69
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=25.49 E-value=1.8e+02 Score=29.84 Aligned_cols=17 Identities=47% Similarity=1.001 Sum_probs=12.1
Q ss_pred CCCCCC--CCCCCCCCCCC
Q 046217 39 PPAMGY--PPAMGYPPGYR 55 (288)
Q Consensus 39 ~~~~~~--~~~~~~~~~~~ 55 (288)
+|+++| |++.|||+|-|
T Consensus 440 ~Pp~~~~~p~~~~~ppg~p 458 (554)
T KOG0119|consen 440 YPPTSYAPPPQSGQPPGIP 458 (554)
T ss_pred CCCccCCCCCccCCCCCCC
Confidence 477778 77888876644
No 70
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=24.86 E-value=43 Score=33.02 Aligned_cols=15 Identities=7% Similarity=0.222 Sum_probs=8.7
Q ss_pred CceeEEEEEEEEEeC
Q 046217 139 DFTSAWEINLVVENR 153 (288)
Q Consensus 139 ~L~a~l~~~Lsv~NP 153 (288)
.|+..++++...++-
T Consensus 83 NLtkeLN~t~~~K~~ 97 (442)
T PF06637_consen 83 NLTKELNLTTRAKDA 97 (442)
T ss_pred HHHHHhchhHHHHHH
Confidence 455566666666554
No 71
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=24.50 E-value=1.8e+02 Score=23.18 Aligned_cols=19 Identities=26% Similarity=0.252 Sum_probs=9.4
Q ss_pred CcE-EehhHHHHHHHHHHHH
Q 046217 89 SSF-AILTTMMLFVFFTFIV 107 (288)
Q Consensus 89 ~~~-~l~~~li~lvlllgii 107 (288)
..| |+-+++.++++=+||+
T Consensus 62 ~~ft~~Gi~~AI~fFPiGil 81 (98)
T PF10164_consen 62 DSFTCCGILCAIFFFPIGIL 81 (98)
T ss_pred ccccHHHHHHHHHHHhhHHH
Confidence 344 4434444455556665
No 72
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=24.39 E-value=81 Score=21.41 Aligned_cols=23 Identities=9% Similarity=0.171 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHheeeEEeec
Q 046217 95 TTMMLFVFFTFIVGLVLMFLIARP 118 (288)
Q Consensus 95 ~~li~lvlllgii~~lIlwLvlrP 118 (288)
.++.+.+++++++ ..-+|..+.|
T Consensus 7 ~~i~i~~~lv~~T-gy~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSIT-GYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHH-hhhhhheeCC
Confidence 3445556677778 7888988876
No 73
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.81 E-value=53 Score=31.20 Aligned_cols=8 Identities=13% Similarity=0.538 Sum_probs=3.3
Q ss_pred EehhHHHH
Q 046217 92 AILTTMML 99 (288)
Q Consensus 92 ~l~~~li~ 99 (288)
|+|+++++
T Consensus 272 ~i~ii~~i 279 (297)
T KOG0810|consen 272 IIIIIILI 279 (297)
T ss_pred eeeehHHH
Confidence 44444333
No 74
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=23.52 E-value=38 Score=23.28 Aligned_cols=12 Identities=25% Similarity=0.235 Sum_probs=7.1
Q ss_pred HheeeEEeecCC
Q 046217 109 LVLMFLIARPKF 120 (288)
Q Consensus 109 ~lIlwLvlrPk~ 120 (288)
+.|++.+++|+.
T Consensus 24 igiv~wa~~p~~ 35 (48)
T cd01324 24 LGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHhCCCc
Confidence 445556777753
No 75
>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp. This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].
Probab=23.44 E-value=54 Score=26.74 Aligned_cols=10 Identities=60% Similarity=1.271 Sum_probs=5.4
Q ss_pred CCCCCCCCCC
Q 046217 15 EIPEPPPPTR 24 (288)
Q Consensus 15 ~~~~~~~~~~ 24 (288)
++||||||+|
T Consensus 61 gSPePPpPPP 70 (124)
T PF12355_consen 61 GSPEPPPPPP 70 (124)
T ss_pred CCCCCCCcCC
Confidence 3466665544
No 76
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=23.07 E-value=2.7e+02 Score=30.06 Aligned_cols=8 Identities=38% Similarity=0.737 Sum_probs=3.7
Q ss_pred eeeEEeec
Q 046217 111 LMFLIARP 118 (288)
Q Consensus 111 IlwLvlrP 118 (288)
+=|+.++|
T Consensus 374 lnW~alKP 381 (830)
T KOG1923|consen 374 LNWLALKP 381 (830)
T ss_pred ccccccCc
Confidence 34444444
No 77
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=22.70 E-value=1.1e+02 Score=28.27 Aligned_cols=16 Identities=6% Similarity=0.181 Sum_probs=6.5
Q ss_pred CCcE-EehhHHHHHHHH
Q 046217 88 PSSF-AILTTMMLFVFF 103 (288)
Q Consensus 88 r~~~-~l~~~li~lvll 103 (288)
|..| |=...++.+=++
T Consensus 44 R~~FiRKVYsIl~~QLl 60 (237)
T KOG2322|consen 44 RWGFIRKVYSILSIQLL 60 (237)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3444 443444443333
No 78
>PHA03269 envelope glycoprotein C; Provisional
Probab=22.56 E-value=1.7e+02 Score=29.96 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHheeeEEee
Q 046217 96 TMMLFVFFTFIVGLVLMFLIAR 117 (288)
Q Consensus 96 ~li~lvlllgii~~lIlwLvlr 117 (288)
+++++++++|++ ++|.-+.|+
T Consensus 543 gV~~~~~algli-ilItAlCfy 563 (566)
T PHA03269 543 GIISIIGILGLI-ALIATLCIR 563 (566)
T ss_pred HHHHHHHHHHHH-HhheeEEEE
Confidence 333444455665 566655543
No 79
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=22.39 E-value=57 Score=27.34 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=13.9
Q ss_pred EehhHHHHHHHHHHHHHHheeeEEeecCC
Q 046217 92 AILTTMMLFVFFTFIVGLVLMFLIARPKF 120 (288)
Q Consensus 92 ~l~~~li~lvlllgii~~lIlwLvlrPk~ 120 (288)
|+|++++..++++++ .+++.+||+.
T Consensus 106 ~~~aclit~l~~~~i----~~~i~~kpR~ 130 (139)
T PF04881_consen 106 CICACLITALLCVCI----HLLIKIKPRN 130 (139)
T ss_pred HHHHHHHHHHHHHHH----hhheeecccc
Confidence 555555555444433 3445688874
No 80
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.91 E-value=34 Score=23.24 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=6.8
Q ss_pred HheeeEEeecCC
Q 046217 109 LVLMFLIARPKF 120 (288)
Q Consensus 109 ~lIlwLvlrPk~ 120 (288)
+.|+|.+++|++
T Consensus 23 ~gi~~w~~~~~~ 34 (49)
T PF05545_consen 23 IGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHcccc
Confidence 344455667764
No 81
>PF06835 LptC: Lipopolysaccharide-assembly, LptC-related; InterPro: IPR010664 This family consists of several related groups of proteins one of which is the LptC family. LptC is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The cell envelope of Gram-negative bacteria consists of an inner (IM) and an outer membrane (OM) separated by an aqueous compartment, the periplasm, which contains the peptidoglycan layer. The OM is an asymmetric bilayer, with phospholipids in the inner leaflet and lipopolysaccharides (LPS) facing outward [, ]. The OM is an effective permeability barrier that protects the cells from toxic compounds, such as antibiotics and detergents, thus allowing bacteria to inhabit several different and often hostile environments. LPS is responsible for the permeability properties of the OM. LPS consists of the lipid A moiety (a glucosamine-based phospholipid) linked to the short core oligosaccharide and the distal O-antigen polysaccharide chain. The core oligosaccharide can be further divided into an inner core, composed of 3-deoxy-D-mannooctulosanate (KDO) and heptose, and an outer core, which has a somewhat variable structure. LPS is essential in most Gram-negative bacteria, with the notable exception of Neisseria meningitidis. The biogenesis of the OM implies that the individual components are transported from the site of synthesis to their final destination outside the IM by crossing both hydrophilic and hydrophobic compartments. The machinery and the energy source that drive this process are not yet fully understood. The lipid A-core moiety and the O-antigen repeat units are synthesized at the cytoplasmic face of the IM and are separately exported via two independent transport systems, namely, the O-antigen transporter Wzx (RfbX) [, ] and the ATP binding cassette (ABC) transporter MsbA that flips the lipid A-core moiety from the inner leaflet to the outer leaflet of the IM [, , ]. O-antigen repeat units are then polymerised in the periplasm by the Wzy polymerase and ligated to the lipid A-core moiety by the WaaL ligase [see, , ]. The LPS transport machinery is composed of LptA, LptB, LptC, LptD, LptE. This supported by the fact, that depletion of any of one of these proteins blocks the LPS assembly pathway and results in very similar OM biogenesis defects. Moreover, the location of at least one of these five proteins in every cellular compartment suggests a model for how the LPS assembly pathway is organised and ordered in space []. Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [].; PDB: 3MY2_A.
Probab=21.87 E-value=4e+02 Score=21.72 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=14.2
Q ss_pred CCEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEE
Q 046217 120 FPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYF 170 (288)
Q Consensus 120 ~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y 170 (288)
.|.+.++++++..++-. +.+...++..=..+++|.+. ++.+...+.++-
T Consensus 32 ~~~~~~~~~~~~~~~~~-G~~~~~l~A~~~~~~~~~~~-~~l~~p~~~~~~ 80 (176)
T PF06835_consen 32 DPDYSIENFTLTQYDED-GKLQWKLTAERAEHYPNSDT-VELEDPSLIIYD 80 (176)
T ss_dssp ----------------------EEEE-SSEEEETTTTE-EEEES-EEEEE-
T ss_pred CCcEEEEeeEEEEECCC-CCEEEEEEEeEEEEecCCCc-EEEeccEEEEEe
Confidence 34555555555544322 23555555555567776643 455555555544
No 82
>PHA03271 envelope glycoprotein C; Provisional
Probab=21.55 E-value=2e+02 Score=28.90 Aligned_cols=17 Identities=12% Similarity=0.022 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHheeeEEe
Q 046217 99 LFVFFTFIVGLVLMFLIA 116 (288)
Q Consensus 99 ~lvlllgii~~lIlwLvl 116 (288)
.+.++++++ ++|.-|.|
T Consensus 464 g~avlla~~-ilItALCf 480 (490)
T PHA03271 464 GLALILGMG-IILTALCF 480 (490)
T ss_pred HHHHHHHHH-HhheeEEE
Confidence 333344444 55555554
No 83
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=21.44 E-value=3.3e+02 Score=25.37 Aligned_cols=11 Identities=55% Similarity=1.289 Sum_probs=5.5
Q ss_pred CCCCCCCCCCC
Q 046217 16 IPEPPPPTRQY 26 (288)
Q Consensus 16 ~~~~~~~~~~~ 26 (288)
-+++||++-.|
T Consensus 172 y~~ppp~P~~y 182 (261)
T KOG3294|consen 172 YPVPPPPPNGY 182 (261)
T ss_pred CCCCCCCcccc
Confidence 34555555555
No 84
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=21.28 E-value=91 Score=21.48 Aligned_cols=22 Identities=5% Similarity=0.164 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHheeeEEeec
Q 046217 96 TMMLFVFFTFIVGLVLMFLIARP 118 (288)
Q Consensus 96 ~li~lvlllgii~~lIlwLvlrP 118 (288)
++.+..++++++ ..-+|..+-|
T Consensus 11 ~i~i~~lL~~~T-gyaiYtaFGp 32 (46)
T PRK13183 11 AITILAILLALT-GFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHh-hheeeeccCC
Confidence 444556677777 8888888877
No 85
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.17 E-value=43 Score=31.37 Aligned_cols=23 Identities=13% Similarity=0.025 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHheeeEEee
Q 046217 94 LTTMMLFVFFTFIVGLVLMFLIAR 117 (288)
Q Consensus 94 ~~~li~lvlllgii~~lIlwLvlr 117 (288)
|+.++++++++.++ .+++|++++
T Consensus 246 ~~ll~v~~~v~lii-~l~i~~~~~ 268 (269)
T KOG0811|consen 246 CILLLVGGPVGLII-GLIIAGIAA 268 (269)
T ss_pred hhhhHHHHHHHHHH-HHHHHHhhc
Confidence 33333333333334 566665543
No 86
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=20.90 E-value=45 Score=31.10 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=12.3
Q ss_pred CceeEEEEEEEEEeCCCe
Q 046217 139 DFTSAWEINLVVENRNFG 156 (288)
Q Consensus 139 ~L~a~l~~~Lsv~NPN~k 156 (288)
.+..+=++++.++|.|.+
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 344555677788888876
No 87
>CHL00020 psbN photosystem II protein N
Probab=20.68 E-value=1e+02 Score=20.94 Aligned_cols=22 Identities=0% Similarity=-0.010 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHheeeEEeec
Q 046217 96 TMMLFVFFTFIVGLVLMFLIARP 118 (288)
Q Consensus 96 ~li~lvlllgii~~lIlwLvlrP 118 (288)
++.+..++++++ ..-+|..+-|
T Consensus 8 ~i~i~~ll~~~T-gy~iYtaFGp 29 (43)
T CHL00020 8 AIFISGLLVSFT-GYALYTAFGQ 29 (43)
T ss_pred HHHHHHHHHHhh-heeeeeccCC
Confidence 444556677777 7888888877
No 88
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=20.05 E-value=35 Score=25.14 Aligned_cols=15 Identities=40% Similarity=0.811 Sum_probs=0.0
Q ss_pred HHHHHHHheeeEEeec
Q 046217 103 FTFIVGLVLMFLIARP 118 (288)
Q Consensus 103 llgii~~lIlwLvlrP 118 (288)
+++++ +||+++++|=
T Consensus 22 ll~ai-lLIlf~iyR~ 36 (64)
T PF01034_consen 22 LLFAI-LLILFLIYRM 36 (64)
T ss_dssp ----------------
T ss_pred HHHHH-HHHHHHHHHH
Confidence 33444 5666677663
Done!