Query 046217
Match_columns 288
No_of_seqs 147 out of 721
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:10:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.0 5.6E-05 1.9E-09 64.8 10.8 78 119-205 43-120 (174)
2 1xo8_A AT1G01470; structural g 97.8 5.2E-05 1.8E-09 63.4 8.0 78 119-205 20-97 (151)
3 3but_A Uncharacterized protein 97.3 0.0034 1.2E-07 51.6 11.7 63 140-207 16-78 (136)
4 2knc_B Integrin beta-3; transm 38.5 11 0.00038 27.6 1.3 22 92-114 12-33 (79)
5 2l0d_A Cell surface protein; s 33.1 1.7E+02 0.0057 22.6 11.3 53 121-182 3-55 (114)
6 2k9j_B Integrin beta-3; transm 26.4 25 0.00085 22.7 1.3 21 93-114 12-32 (43)
7 3s8f_C Cytochrome C oxidase po 24.5 22 0.00076 22.0 0.7 15 99-114 10-24 (34)
8 4gyx_A Type III collagen fragm 24.4 96 0.0033 18.1 3.4 11 39-49 12-22 (31)
9 3hd7_B Syntaxin-1A; membrane p 17.5 29 0.001 26.6 0.2 24 92-116 85-108 (109)
10 2l8s_A Integrin alpha-1; trans 17.4 49 0.0017 22.6 1.3 20 93-113 12-31 (54)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=97.96 E-value=5.6e-05 Score=64.82 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=70.6
Q ss_pred CCCEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceEEE
Q 046217 119 KFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTI 198 (288)
Q Consensus 119 k~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v 198 (288)
+.|+++|.++++.+++.. ..++.+.|+++|||. +.|.++.++..+.-+|. .++++..+++ +..++++++.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~----~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~-~lasG~s~~~---~tIpa~g~~~v 113 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD----GVDYHAKVSVKNPYS-QSIPICQISYILKSATR-TIASGTIPDP---GSLVGSGTTVL 113 (174)
T ss_dssp CCCEEEEEEEEEEEECSS----SEEEEEEEEEEECSS-SCCBCCSEEEEEEESSS-CEEEEEESCC---CBCCSSEEEEE
T ss_pred CCCEEEEEEeEEeccccc----eEEEEEEEEEECCCC-CCccccceEEEEEECCE-EEEEEecCCC---ceECCCCcEEE
Confidence 789999999999888654 488999999999999 99999999999999776 8999999867 99999999999
Q ss_pred EEEEEec
Q 046217 199 DIKLSTA 205 (288)
Q Consensus 199 ~v~l~~~ 205 (288)
.+.++..
T Consensus 114 ~Vpv~v~ 120 (174)
T 1yyc_A 114 DVPVKVA 120 (174)
T ss_dssp EEEEEES
T ss_pred EEEEEEE
Confidence 9998875
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.81 E-value=5.2e-05 Score=63.44 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=68.2
Q ss_pred CCCEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceEEE
Q 046217 119 KFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTI 198 (288)
Q Consensus 119 k~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v 198 (288)
+.|+++|.++++.+++. ...++.+.|+++|||. ..|.++.++..+.-+|. .++++..+++ +..++++++.+
T Consensus 20 ~~P~v~v~~v~~~~~~~----~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~-~lasG~~~~~---~~ipa~g~~~v 90 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR----DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGR-EIGKGKIPDP---GSLKAKDMTAL 90 (151)
T ss_dssp CSCCCBCSEEEECCCTT----TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSS-CEEEEEEEEC---CCCSSSSEEEE
T ss_pred CCCEEEEEEeEEeccCc----ceeEEEEEEEEECCCC-CCcccccEEEEEEECCE-EEEEEecCCC---cEECCCCcEEE
Confidence 67999999999887743 4678999999999999 99999999999988776 8999999867 99999999999
Q ss_pred EEEEEec
Q 046217 199 DIKLSTA 205 (288)
Q Consensus 199 ~v~l~~~ 205 (288)
.+.++..
T Consensus 91 ~vpv~v~ 97 (151)
T 1xo8_A 91 DIPVVVP 97 (151)
T ss_dssp EECCCEE
T ss_pred EEEEEEE
Confidence 9887765
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.27 E-value=0.0034 Score=51.56 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=55.2
Q ss_pred ceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceEEEEEEEEeccc
Q 046217 140 FTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADY 207 (288)
Q Consensus 140 L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v~v~l~~~~~ 207 (288)
-...+.+.|.+.|||. +.+.++.++..|...|. .+|++..... +..++.+++.+.+.+..+..
T Consensus 16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~-~la~G~s~~~---~~I~~~g~~~v~v~~~i~~~ 78 (136)
T 3but_A 16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGV-KVADGYENSP---VTVKPASATTLKFSLRLNNS 78 (136)
T ss_dssp SEEEEEEEEEEECCSS-SCEEEEEEEEEEEETTE-EEEEEEECCC---EEECTTCEEEEEEEEEEEHH
T ss_pred cEEEEEEEEEEeCCCC-cceeeeceEEEEEECCE-EEEeeeecCc---eEECCCCcEEEEEEEEEchH
Confidence 4678999999999998 99999999999999775 8999886635 99999999999999888765
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=38.47 E-value=11 Score=27.61 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=13.9
Q ss_pred EehhHHHHHHHHHHHHHHheeeE
Q 046217 92 AILTTMMLFVFFTFIVGLVLMFL 114 (288)
Q Consensus 92 ~l~~~li~lvlllgii~~lIlwL 114 (288)
.+...+++.++++|++ ++++|-
T Consensus 12 ~Iv~gvi~gilliGll-llliwk 33 (79)
T 2knc_B 12 VVLLSVMGAILLIGLA-ALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHH
T ss_pred hhHHHHHHHHHHHHHH-HHHHHH
Confidence 3334555667778888 676664
No 5
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=33.05 E-value=1.7e+02 Score=22.56 Aligned_cols=53 Identities=8% Similarity=0.047 Sum_probs=31.2
Q ss_pred CEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeec
Q 046217 121 PIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFD 182 (288)
Q Consensus 121 P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp 182 (288)
|.+.|.+++ .++..-+-..+++++|+|.-.... ..+.+.++-+|. .++...+.
T Consensus 3 PDL~vt~it-----P~~~~~~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~-~v~t~~v~ 55 (114)
T 2l0d_A 3 PDLVPVSLT-----PVTVVPNTVNTMTATIENQGNKDS---TSFNVSLLVDGI-VVDTQTVT 55 (114)
T ss_dssp CCEEEEEEE-----CSEECTTSEEEEEEEEEECSSSCB---CCEEEEEEETTE-EEEEEEES
T ss_pred CCcEEEecc-----CCCcCCCCeEEEEEEEEECCCCCC---CCEEEEEEECCE-EEcceecc
Confidence 455555553 222244567889999999865332 345556666555 66666554
No 6
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=26.44 E-value=25 Score=22.71 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=13.2
Q ss_pred ehhHHHHHHHHHHHHHHheeeE
Q 046217 93 ILTTMMLFVFFTFIVGLVLMFL 114 (288)
Q Consensus 93 l~~~li~lvlllgii~~lIlwL 114 (288)
+...++..++++|++ ++++|-
T Consensus 12 Iv~gvi~~ivliGl~-lLliwk 32 (43)
T 2k9j_B 12 VLLSVMGAILLIGLA-ALLIWK 32 (43)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHH-HHHHHH
Confidence 333455567778887 777663
No 7
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=24.49 E-value=22 Score=21.99 Aligned_cols=15 Identities=7% Similarity=0.423 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHheeeE
Q 046217 99 LFVFFTFIVGLVLMFL 114 (288)
Q Consensus 99 ~lvlllgii~~lIlwL 114 (288)
+.++++|++ ++++|+
T Consensus 10 ~~V~ilg~~-I~i~W~ 24 (34)
T 3s8f_C 10 AVILVLTLT-ILVFWL 24 (34)
T ss_dssp HHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHH-HHHHHH
Confidence 445566666 667775
No 8
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=24.41 E-value=96 Score=18.14 Aligned_cols=11 Identities=45% Similarity=0.987 Sum_probs=5.3
Q ss_pred CCCCCCCCCCC
Q 046217 39 PPAMGYPPAMG 49 (288)
Q Consensus 39 ~~~~~~~~~~~ 49 (288)
|-.||+|..-|
T Consensus 12 pgvmgfpgppg 22 (31)
T 4gyx_A 12 PGVMGFPGPPG 22 (31)
T ss_dssp CCCCCCCCCCC
T ss_pred CccccCCCCCC
Confidence 44555554433
No 9
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=17.51 E-value=29 Score=26.62 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred EehhHHHHHHHHHHHHHHheeeEEe
Q 046217 92 AILTTMMLFVFFTFIVGLVLMFLIA 116 (288)
Q Consensus 92 ~l~~~li~lvlllgii~~lIlwLvl 116 (288)
+.|++++++++++.++ ++++-+.+
T Consensus 85 k~~i~l~~~~i~~~i~-~~~~~~~~ 108 (109)
T 3hd7_B 85 KKIMIIICCVILGIII-ASTIGGIF 108 (109)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHTTC-
T ss_pred cceehHHHHHHHHHHH-HHHhcccc
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=17.44 E-value=49 Score=22.57 Aligned_cols=20 Identities=10% Similarity=0.388 Sum_probs=0.0
Q ss_pred ehhHHHHHHHHHHHHHHheee
Q 046217 93 ILTTMMLFVFFTFIVGLVLMF 113 (288)
Q Consensus 93 l~~~li~lvlllgii~~lIlw 113 (288)
++.++++-+++++++ ++++|
T Consensus 12 Ii~svl~GLLLL~Li-i~~Lw 31 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLL-ILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHH
Done!