BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046218
         (437 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  158 bits (400), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 99/162 (61%), Gaps = 9/162 (5%)

Query: 18  SFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYF 74
           S PPG+RF PTD+EL++ YL  KA         I +I+LY   P  L  +    EK  YF
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 75

Query: 75  FTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNW 134
           F+PRDRKYP G+RPNR AG GYWKATG D II  +   +G +K+LV+Y G   K  KTNW
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNW 135

Query: 135 IMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDK 176
           IMHEYR+   S    ST      KLDDWVLC++Y K   + K
Sbjct: 136 IMHEYRLIEPSRRNGST------KLDDWVLCRIYKKQSSAQK 171


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  158 bits (399), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 99/162 (61%), Gaps = 9/162 (5%)

Query: 18  SFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYF 74
           S PPG+RF PTD+EL++ YL  KA         I +I+LY   P  L  +    EK  YF
Sbjct: 19  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 78

Query: 75  FTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNW 134
           F+PRDRKYP G+RPNR AG GYWKATG D II  +   +G +K+LV+Y G   K  KTNW
Sbjct: 79  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNW 138

Query: 135 IMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDK 176
           IMHEYR+   S    ST      KLDDWVLC++Y K   + K
Sbjct: 139 IMHEYRLIEPSRRNGST------KLDDWVLCRIYKKQSSAQK 174


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 102/161 (63%), Gaps = 4/161 (2%)

Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
            PPG+RF PTD ELV  YL  KA  + LP   I +++LY   P DL E+     +  YFF
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFF 74

Query: 76  TPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWI 135
           TPRDRKYP G+RPNRAAG GYWKATG D  +  +   +G +K+LV+Y G   +  KT+WI
Sbjct: 75  TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWI 134

Query: 136 MHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDK 176
           MHEYR+       ++ A    ++LDDWVLC++Y K  + +K
Sbjct: 135 MHEYRLADAG-RAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174


>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
           Cryo-Em Map
          Length = 517

 Score = 29.3 bits (64), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 99  ATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRIDH 143
           A G+ +++     P G  K LV   G  K +K  N ++HE +I H
Sbjct: 19  ARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQH 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.128    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,198,957
Number of Sequences: 62578
Number of extensions: 523319
Number of successful extensions: 838
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 10
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)