Query 046218
Match_columns 437
No_of_seqs 180 out of 960
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 17:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.4E-56 4.8E-61 412.1 12.9 160 15-175 11-173 (174)
2 1ut7_A No apical meristem prot 100.0 9.3E-56 3.2E-60 405.3 10.2 154 16-175 14-170 (171)
3 1ldd_A APC2WHB, anaphase promo 13.4 87 0.003 25.0 2.0 27 20-47 37-64 (74)
4 1cmb_A Met APO-repressor; DNA- 9.5 2.7E+02 0.0091 23.4 3.7 38 26-67 50-87 (104)
5 2crr_A Stromal membrane-associ 9.2 4.6E+02 0.016 22.9 5.4 36 13-49 95-130 (141)
6 3nr5_A MAF1, repressor of RNA 9.0 69 0.0023 29.2 -0.1 12 51-62 119-130 (164)
7 1f6k_A N-acetylneuraminate lya 7.3 1.6E+02 0.0055 27.9 1.7 21 17-38 104-124 (293)
8 2ehh_A DHDPS, dihydrodipicolin 7.3 1.6E+02 0.0055 27.9 1.7 20 17-37 100-119 (294)
9 2ojp_A DHDPS, dihydrodipicolin 7.2 1.6E+02 0.0056 27.8 1.7 19 17-36 101-119 (292)
10 3cpr_A Dihydrodipicolinate syn 7.1 1.7E+02 0.0057 28.1 1.7 20 17-37 116-135 (304)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.4e-56 Score=412.14 Aligned_cols=160 Identities=48% Similarity=0.925 Sum_probs=134.7
Q ss_pred hcccCCCCceeCCCHHHHHHHHHHhhhcCCCCCCCceeecCCCCCCCCCcccc---cCceEEeecCccccCCCCCCCccc
Q 046218 15 YLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQ---EEKTLYFFTPRDRKYPKGTRPNRA 91 (437)
Q Consensus 15 ~~~~LPPGFRF~PTDEELV~~YLrrKi~G~Plp~~iI~EvDVY~~dPWELp~~---ge~EWYFFSpR~rKy~nG~R~nRa 91 (437)
....|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+. ++++||||++|++||++|.|++|+
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEE
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceee
Confidence 34689999999999999999999999999999999999999999999999988 788999999999999999999999
Q ss_pred cccceeEecCCCeeecCCCCceeEEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCCCCCCcEEEEEEEEeC
Q 046218 92 AGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKD 171 (437)
Q Consensus 92 tGgGyWKatG~dK~I~s~g~vVG~KKtLvFY~GkaprG~KTgWVMhEYrL~~~~~~~s~~~~~~~~~~dd~VLCRIYkK~ 171 (437)
+++||||++|++|+|...|++||+||+|+||.|+++++.||+|+||||+|........ .........++|||||||+|+
T Consensus 91 t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~-~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAA-GAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp ETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC------------CCSSEEEEEEEESC
T ss_pred cCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccc-ccccCCCCCCCEEEEEEEEcC
Confidence 9999999999999999889999999999999999999999999999999998642110 011123467899999999998
Q ss_pred CCCC
Q 046218 172 KKSD 175 (437)
Q Consensus 172 r~~e 175 (437)
+.-+
T Consensus 170 ~~~~ 173 (174)
T 3ulx_A 170 NEWE 173 (174)
T ss_dssp C---
T ss_pred CCcC
Confidence 6543
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=9.3e-56 Score=405.27 Aligned_cols=154 Identities=51% Similarity=0.942 Sum_probs=130.3
Q ss_pred cccCCCCceeCCCHHHHHHHHHHhhhcCCCCCCCceeecCCCCCCCCCcccc---cCceEEeecCccccCCCCCCCcccc
Q 046218 16 LNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQ---EEKTLYFFTPRDRKYPKGTRPNRAA 92 (437)
Q Consensus 16 ~~~LPPGFRF~PTDEELV~~YLrrKi~G~Plp~~iI~EvDVY~~dPWELp~~---ge~EWYFFSpR~rKy~nG~R~nRat 92 (437)
...|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+. ++++||||++|++||++|.|++|++
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t 93 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVA 93 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEE
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccC
Confidence 4789999999999999999999999999999999999999999999999987 7899999999999999999999999
Q ss_pred ccceeEecCCCeeecCCCCceeEEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCCCCCCcEEEEEEEEeCC
Q 046218 93 GRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDK 172 (437)
Q Consensus 93 GgGyWKatG~dK~I~s~g~vVG~KKtLvFY~GkaprG~KTgWVMhEYrL~~~~~~~s~~~~~~~~~~dd~VLCRIYkK~r 172 (437)
++||||++|++++|...+++||+||+|+||.|+++++.||+|+||||+|..... .......++|||||||+|++
T Consensus 94 ~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~------~~~~~~~~~~VlCrv~~k~~ 167 (171)
T 1ut7_A 94 GSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR------RNGSTKLDDWVLCRIYKKQS 167 (171)
T ss_dssp TTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------CCEEEEEEEECC-
T ss_pred CCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc------ccCcccCCCEEEEEEEEcCC
Confidence 999999999999999888999999999999999999999999999999998541 11234568999999999987
Q ss_pred CCC
Q 046218 173 KSD 175 (437)
Q Consensus 173 ~~e 175 (437)
..+
T Consensus 168 ~~~ 170 (171)
T 1ut7_A 168 SAQ 170 (171)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=13.41 E-value=87 Score=24.96 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.5
Q ss_pred CCCceeCC-CHHHHHHHHHHhhhcCCCCC
Q 046218 20 PPGYRFCP-TDKELVLDYLKNKAMNKPLP 47 (437)
Q Consensus 20 PPGFRF~P-TDEELV~~YLrrKi~G~Plp 47 (437)
|.|+.|.. |++||- .||-+|+....+.
T Consensus 37 ~~~~~~~~it~~eL~-~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLE-GYLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHH-HHHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHH-HHHHHHHhCCeEE
Confidence 67999998 999986 6999999877553
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=9.54 E-value=2.7e+02 Score=23.39 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCCCceeecCCCCCCCCCcccc
Q 046218 26 CPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQ 67 (437)
Q Consensus 26 ~PTDEELV~~YLrrKi~G~Plp~~iI~EvDVY~~dPWELp~~ 67 (437)
|-|.-||++.-...-..|+|+|. +.|+-+..|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHH
Confidence 56888998877777889999995 478899999999865
No 5
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.21 E-value=4.6e+02 Score=22.86 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=26.6
Q ss_pred HhhcccCCCCceeCCCHHHHHHHHHHhhhcCCCCCCC
Q 046218 13 LKYLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPN 49 (437)
Q Consensus 13 ~~~~~~LPPGFRF~PTDEELV~~YLrrKi~G~Plp~~ 49 (437)
.-+...||.+++ .|+.++.+..|++.|-.-..+-..
T Consensus 95 ~~~e~~lp~~~~-~P~~~~~~e~fIr~KY~~k~f~~~ 130 (141)
T 2crr_A 95 LLYEANLPENFR-RPQTDQAVEFFIRDKYEKKKYYDK 130 (141)
T ss_dssp HHGGGSCCTTCC-CCCSHHHHHHHHHHHHTSCTTCCC
T ss_pred HHHHhcCCcccC-CCCchHHHHHHHHHHHhcCcccCC
Confidence 344568899876 477777889999999987766544
No 6
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=9.00 E-value=69 Score=29.17 Aligned_cols=12 Identities=17% Similarity=0.670 Sum_probs=10.6
Q ss_pred eeecCCCCCCCC
Q 046218 51 IMDINLYNHGPQ 62 (437)
Q Consensus 51 I~EvDVY~~dPW 62 (437)
+.++|||++.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 678899999998
No 7
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=7.31 E-value=1.6e+02 Score=27.92 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=15.6
Q ss_pred ccCCCCceeCCCHHHHHHHHHH
Q 046218 17 NSFPPGYRFCPTDKELVLDYLK 38 (437)
Q Consensus 17 ~~LPPGFRF~PTDEELV~~YLr 38 (437)
.-+||.| |.||+++|+.||-.
T Consensus 104 lv~~P~y-~~~~~~~l~~~f~~ 124 (293)
T 1f6k_A 104 SAVTPFY-YKFSFPEIKHYYDT 124 (293)
T ss_dssp EEECCCS-SCCCHHHHHHHHHH
T ss_pred EECCCCC-CCCCHHHHHHHHHH
Confidence 4567755 88999999987643
No 8
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=7.30 E-value=1.6e+02 Score=27.93 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=15.2
Q ss_pred ccCCCCceeCCCHHHHHHHHH
Q 046218 17 NSFPPGYRFCPTDKELVLDYL 37 (437)
Q Consensus 17 ~~LPPGFRF~PTDEELV~~YL 37 (437)
.-+||-| |.||+++|+.||-
T Consensus 100 lv~~P~y-~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 100 LVVVPYY-NKPTQRGLYEHFK 119 (294)
T ss_dssp EEECCCS-SCCCHHHHHHHHH
T ss_pred EECCCCC-CCCCHHHHHHHHH
Confidence 4557754 8899999998774
No 9
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=7.20 E-value=1.6e+02 Score=27.85 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=14.5
Q ss_pred ccCCCCceeCCCHHHHHHHH
Q 046218 17 NSFPPGYRFCPTDKELVLDY 36 (437)
Q Consensus 17 ~~LPPGFRF~PTDEELV~~Y 36 (437)
.-+||-| |.||+++|+.||
T Consensus 101 lv~~P~y-~~~s~~~l~~~f 119 (292)
T 2ojp_A 101 LTVTPYY-NRPSQEGLYQHF 119 (292)
T ss_dssp EEECCCS-SCCCHHHHHHHH
T ss_pred EECCCCC-CCCCHHHHHHHH
Confidence 3456754 889999999876
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=7.13 E-value=1.7e+02 Score=28.09 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=15.3
Q ss_pred ccCCCCceeCCCHHHHHHHHH
Q 046218 17 NSFPPGYRFCPTDKELVLDYL 37 (437)
Q Consensus 17 ~~LPPGFRF~PTDEELV~~YL 37 (437)
.-+||- .|.||+++|+.||-
T Consensus 116 lv~~P~-y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 116 LVVTPY-YSKPSQEGLLAHFG 135 (304)
T ss_dssp EEECCC-SSCCCHHHHHHHHH
T ss_pred EECCCC-CCCCCHHHHHHHHH
Confidence 456774 48899999998763
Done!