BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046219
         (144 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
          Length = 519

 Score = 30.8 bits (68), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 68  LIAFTVFVLIVTNTFVGKKVSQNRLHDYSYWLQNR 102
           L+A   FV ++   F G+ + QN LH  + WLQ +
Sbjct: 299 LVALKKFVAVLAKYFPGQPLVQNFLHSINDWLQKQ 333


>pdb|3LLI|A Chain A, Sulfhydryl Oxidase Fragment Of Human Qsox1
 pdb|3LLK|A Chain A, Sulfhydryl Oxidase Fragment Of Human Qsox1
 pdb|3LLK|B Chain B, Sulfhydryl Oxidase Fragment Of Human Qsox1
 pdb|3LLK|C Chain C, Sulfhydryl Oxidase Fragment Of Human Qsox1
          Length = 261

 Score = 30.8 bits (68), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 68  LIAFTVFVLIVTNTFVGKKVSQNRLHDYSYWLQNRLADGKNWQEIRSCLAD 118
           L+A   FV ++   F G+ + QN LH  + WL+ +  +   +   ++ L D
Sbjct: 42  LVALKKFVAVLAKYFPGRPLVQNFLHSVNEWLKRQKRNKIPYSFFKTALDD 92


>pdb|2W5F|A Chain A, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
           Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
           With Xylohexaose
 pdb|2W5F|B Chain B, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
           Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
           With Xylohexaose
          Length = 540

 Score = 28.1 bits (61), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 109 WQEIRSCLADANVCRNLGNKDLKDWSLVQEHV 140
           W   R C+A  ++C NL NK L D   +Q H+
Sbjct: 389 WDHKRDCIA--SICANLYNKGLLDGVGMQSHI 418


>pdb|2WYS|A Chain A, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
           Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
           With Xylohexaose
 pdb|2WYS|B Chain B, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
           Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
           With Xylohexaose
 pdb|2WZE|A Chain A, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
           Xylanas Xylohexaose
 pdb|2WZE|B Chain B, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
           Xylanas Xylohexaose
          Length = 540

 Score = 27.3 bits (59), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 109 WQEIRSCLADANVCRNLGNKDLKDWSLVQEHV 140
           W   R C+A  ++C NL NK L D    Q H+
Sbjct: 389 WDHKRDCIA--SICANLYNKGLLDGVGXQSHI 418


>pdb|4IL3|A Chain A, Crystal Structure Of S. Mikatae Ste24p
 pdb|4IL3|B Chain B, Crystal Structure Of S. Mikatae Ste24p
          Length = 461

 Score = 26.6 bits (57), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 50  TDWLLCIYLFVMLISILGLIAFTVFVLIVTNTF 82
           TD+L  I +F+ ++ IL +    VF++ + N F
Sbjct: 192 TDFLWYIMVFLFVVQILAMTIIPVFIMPLFNKF 224


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.141    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,104,549
Number of Sequences: 62578
Number of extensions: 139455
Number of successful extensions: 337
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 6
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)