Query 046219
Match_columns 144
No_of_seqs 153 out of 736
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:51:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 99.8 1.7E-20 3.6E-25 148.5 3.8 112 1-112 23-157 (237)
2 PF00335 Tetraspannin: Tetrasp 99.3 3.4E-13 7.3E-18 101.7 -1.9 112 1-112 16-150 (221)
3 cd03154 TM4SF3_like_LEL Tetras 95.6 0.0033 7.2E-08 42.9 0.0 51 72-122 1-72 (100)
4 cd03163 TM4SF8_like_LEL Tetras 94.3 0.012 2.6E-07 40.5 -0.1 26 85-110 18-52 (105)
5 cd03164 CD53_like_LEL Tetraspa 93.6 0.017 3.7E-07 38.4 -0.3 33 85-117 17-60 (86)
6 cd03162 peripherin_like_LEL Te 93.1 0.031 6.8E-07 41.8 0.4 27 84-110 16-56 (143)
7 cd03159 TM4SF9_like_LEL Tetras 92.1 0.034 7.4E-07 39.4 -0.5 26 85-110 17-51 (121)
8 cd03156 uroplakin_I_like_LEL T 92.1 0.017 3.8E-07 39.8 -2.0 15 97-111 36-55 (114)
9 cd03161 TM4SF2_6_like_LEL Tetr 91.9 0.044 9.5E-07 37.4 -0.2 39 85-123 17-73 (104)
10 cd03160 CD37_CD82_like_LEL Tet 91.2 0.067 1.4E-06 37.5 0.2 14 97-110 37-55 (117)
11 cd03166 CD63_LEL Tetraspanin, 90.9 0.079 1.7E-06 35.9 0.4 27 85-111 17-52 (99)
12 cd03158 penumbra_like_LEL Tetr 89.5 0.11 2.5E-06 36.6 0.2 14 97-110 33-51 (119)
13 cd03155 CD151_like_LEL Tetrasp 89.4 0.11 2.4E-06 35.8 0.1 15 97-111 36-55 (110)
14 cd03165 NET-5_like_LEL Tetrasp 89.1 0.092 2E-06 35.4 -0.5 15 97-111 35-54 (98)
15 KOG4433 Tweety transmembrane/c 84.6 1.3 2.8E-05 39.4 4.0 38 28-65 213-250 (526)
16 cd07912 Tweety_N N-terminal do 83.8 1.7 3.6E-05 38.0 4.3 32 29-60 213-244 (418)
17 cd03167 oculospanin_like_LEL T 81.1 0.47 1E-05 33.7 -0.1 14 97-110 33-51 (120)
18 cd03152 CD9_LEL Tetraspanin, e 79.8 0.58 1.3E-05 30.9 0.1 19 97-115 35-58 (84)
19 PF04103 CD20: CD20-like famil 77.2 0.76 1.7E-05 33.0 0.0 64 2-67 10-73 (150)
20 cd03157 TM4SF12_like_LEL Tetra 75.0 1.9 4E-05 30.2 1.5 41 84-124 17-76 (103)
21 cd03127 tetraspanin_LEL Tetras 67.1 1.1 2.4E-05 29.0 -1.0 14 97-110 33-51 (90)
22 PF04906 Tweety: Tweety; Inte 65.1 2.2 4.8E-05 36.9 0.2 28 33-60 194-221 (406)
23 PF04156 IncA: IncA protein; 57.8 41 0.00089 25.3 6.0 55 26-80 9-64 (191)
24 PF13706 PepSY_TM_3: PepSY-ass 45.9 23 0.00051 20.1 2.3 22 28-49 12-33 (37)
25 PF13903 Claudin_2: PMP-22/EMP 44.1 96 0.0021 22.1 6.0 29 28-56 74-103 (172)
26 KOG3950 Gamma/delta sarcoglyca 33.7 56 0.0012 27.0 3.5 27 52-78 35-61 (292)
27 PF05478 Prominin: Prominin; 30.0 1.1E+02 0.0024 28.7 5.3 28 51-78 136-163 (806)
28 PF11023 DUF2614: Protein of u 29.6 1.7E+02 0.0037 21.1 5.1 31 25-60 15-45 (114)
29 PF02932 Neur_chan_memb: Neuro 28.3 2.1E+02 0.0046 20.0 6.3 33 47-79 51-83 (237)
30 PF13630 SdpI: SdpI/YhfL prote 27.5 1.6E+02 0.0035 18.4 5.9 20 23-42 29-48 (76)
31 PRK02935 hypothetical protein; 26.7 2.4E+02 0.0053 20.2 5.7 31 25-60 16-46 (110)
32 PF09323 DUF1980: Domain of un 26.5 1.6E+02 0.0034 22.3 4.8 40 28-67 35-87 (182)
33 PRK09400 secE preprotein trans 26.5 74 0.0016 20.3 2.5 18 27-44 35-52 (61)
34 PF09125 COX2-transmemb: Cytoc 26.1 1.3E+02 0.0028 17.5 3.2 18 56-73 18-35 (38)
35 PF11384 DUF3188: Protein of u 26.1 13 0.00027 22.9 -1.1 21 22-42 22-42 (49)
36 PF04790 Sarcoglycan_1: Sarcog 25.8 98 0.0021 25.4 3.7 34 45-78 5-38 (264)
37 PF13908 Shisa: Wnt and FGF in 25.3 28 0.00061 26.3 0.4 7 29-35 80-86 (179)
38 PF03729 DUF308: Short repeat 24.9 63 0.0014 19.7 2.0 45 3-51 4-48 (72)
39 COG4993 Gcd Glucose dehydrogen 24.7 1.1E+02 0.0023 28.7 4.0 54 1-65 13-66 (773)
40 PF08507 COPI_assoc: COPI asso 24.5 2.4E+02 0.0052 20.2 5.3 43 27-69 9-52 (136)
41 KOG4812 Golgi-associated prote 23.7 1.1E+02 0.0024 25.1 3.5 29 23-51 224-252 (262)
42 TIGR00327 secE_euk_arch protei 23.1 94 0.002 19.9 2.5 18 26-43 30-47 (61)
43 cd03151 CD81_like_LEL Tetraspa 22.9 20 0.00043 23.6 -0.7 14 97-110 35-53 (84)
44 PF13829 DUF4191: Domain of un 21.4 3.4E+02 0.0073 21.9 5.9 44 27-74 28-71 (224)
45 PF05640 NKAIN: Na,K-Atpase In 21.2 3.3E+02 0.0071 21.6 5.7 47 26-73 35-81 (200)
46 cd07912 Tweety_N N-terminal do 20.1 2.5E+02 0.0054 24.6 5.3 22 56-77 81-102 (418)
47 PF11127 DUF2892: Protein of u 20.1 1.2E+02 0.0026 18.9 2.6 20 28-47 36-55 (66)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=99.80 E-value=1.7e-20 Score=148.49 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=89.1
Q ss_pred CceEeeeeeeeeeeccCcchhh----h--hhhhHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 046219 1 MGFAAVFCSAYVQMHDGSACQK----T--LEMPLLVTGLFLLIVSTLGLVGACCRTDWLLCIYLFVMLISILGLIAFTVF 74 (144)
Q Consensus 1 ~G~~ll~~Giw~~~~~~~~~~~----~--~~~~lI~iG~~i~iis~lGc~GA~~es~clL~~y~~~l~ii~l~el~~~i~ 74 (144)
+|++++++|+|+..++...... + ....+|++|.+++++||+||+||+|||+|+|.+|++++++++++|++++++
T Consensus 23 ~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l~l~~i~e~~~~i~ 102 (237)
T KOG3882|consen 23 LGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYFILLLLLFIAELAAGIL 102 (237)
T ss_pred HHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999886422111 1 233489999999999999999999999999999999999999999999999
Q ss_pred hheEEeccc--------ccccccccccc----hhHHHhhhc-----CCCCCCccC
Q 046219 75 VLIVTNTFV--------GKKVSQNRLHD----YSYWLQNRL-----ADGKNWQEI 112 (144)
Q Consensus 75 ~~v~~~~~~--------~~~i~~Y~~~~----~~~~lQ~~~-----~~~~dW~~~ 112 (144)
+++++++.+ .+.+++|+.++ ..|.+|+++ +||+||.+.
T Consensus 103 ~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~d~~Q~~~~CCG~~~~~~~~~~ 157 (237)
T KOG3882|consen 103 AFVFRDSLRDELEEQLLKSIWNNYSSDPDLGEAWDKLQRELKCCGVNGYSDYFNC 157 (237)
T ss_pred hheeHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhccCCcCCCchHHhcC
Confidence 999987655 22334566543 237899997 888999754
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.26 E-value=3.4e-13 Score=101.74 Aligned_cols=112 Identities=17% Similarity=0.348 Sum_probs=17.9
Q ss_pred CceEeeeeeeeee-eccCcc-----hhhhhhhhHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 046219 1 MGFAAVFCSAYVQ-MHDGSA-----CQKTLEMPLLVTGLFLLIVSTLGLVGACCRTDWLLCIYLFVMLISILGLIAFTVF 74 (144)
Q Consensus 1 ~G~~ll~~Giw~~-~~~~~~-----~~~~~~~~lI~iG~~i~iis~lGc~GA~~es~clL~~y~~~l~ii~l~el~~~i~ 74 (144)
+|++++++|+|+. .+...+ ........++.+|+++++++++|++|++++|+|++.+|.+++++++++|++++++
T Consensus 16 ~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~~~~~~~v~~~~~~i~ 95 (221)
T PF00335_consen 16 LGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYIILLILLFVLELVVGIV 95 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccchhhHHHHHHHHHHh
Confidence 4788899999993 222111 1112233467799999999999999999999999999999999999999999999
Q ss_pred hheEEeccc---ccc-----cccccccch----hHHHhhhc-----CCCCCCccC
Q 046219 75 VLIVTNTFV---GKK-----VSQNRLHDY----SYWLQNRL-----ADGKNWQEI 112 (144)
Q Consensus 75 ~~v~~~~~~---~~~-----i~~Y~~~~~----~~~lQ~~~-----~~~~dW~~~ 112 (144)
++.++++.. .+. .+.|..++. .+.+|+++ ++++||...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~CCG~~~~~d~~~~ 150 (221)
T PF00335_consen 96 AFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFECCGVNSPDDWFTS 150 (221)
T ss_dssp ----HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT--SSTTCHHHHHH
T ss_pred hhhccccccccccccccchhhhccccccchhhheecccccccccCCCCCcccccc
Confidence 999877554 111 112222221 15689886 689999754
No 3
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=95.58 E-value=0.0033 Score=42.94 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=31.6
Q ss_pred HhhhheEEeccc-------cccccccccc--chh---HHHhhhc-----CCCCCCcc--C-Ccc-cCCcccc
Q 046219 72 TVFVLIVTNTFV-------GKKVSQNRLH--DYS---YWLQNRL-----ADGKNWQE--I-RSC-LADANVC 122 (144)
Q Consensus 72 ~i~~~v~~~~~~-------~~~i~~Y~~~--~~~---~~lQ~~~-----~~~~dW~~--~-~sC-~~~~~~C 122 (144)
||++|+++++.. .+.+++|..+ +.+ |.+|+++ +++.||.. . .|| +.+...|
T Consensus 1 gi~~~v~r~~i~~~i~~~~~~~i~~y~~~~~~~~~~~d~lQ~~l~CCG~~~~~d~~~~~vP~SCcc~~~~~c 72 (100)
T cd03154 1 GIVGAVYKPKIENELKEKNTKLLSLLGQNAKSVKKSLEKFQKELKCCGLVNGADDWGNDIPASCNCTTTQSD 72 (100)
T ss_pred CEEEEEeHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCCCCchhhccCCCCCCCcCCCCCCC
Confidence 578899987665 3455566533 222 6799998 67777753 2 477 4444344
No 4
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=94.29 E-value=0.012 Score=40.50 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=17.6
Q ss_pred cccccccccch----hHHHhhhc-----CCCCCCc
Q 046219 85 KKVSQNRLHDY----SYWLQNRL-----ADGKNWQ 110 (144)
Q Consensus 85 ~~i~~Y~~~~~----~~~lQ~~~-----~~~~dW~ 110 (144)
+.+++|+.++. .|.+|+++ ++++||.
T Consensus 18 ~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~Dw~ 52 (105)
T cd03163 18 KVFNKYNGTNAESRAVDYLQRQLQCCGIHNYTDWE 52 (105)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhCcccCCCCHHHHh
Confidence 34455654322 26799997 8999995
No 5
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=93.58 E-value=0.017 Score=38.41 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=21.0
Q ss_pred ccccccccc-ch---hHHHhhhc-----CCCCCCccC--CcccC
Q 046219 85 KKVSQNRLH-DY---SYWLQNRL-----ADGKNWQEI--RSCLA 117 (144)
Q Consensus 85 ~~i~~Y~~~-~~---~~~lQ~~~-----~~~~dW~~~--~sC~~ 117 (144)
+.+++|..+ +. .|.+|+++ ++++||... .||+.
T Consensus 17 ~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~Dw~~~vP~SCC~ 60 (86)
T cd03164 17 DSLEQYHKDNNTSEAWDMIQSNLQCCGINGTTDWGSGVPSSCCS 60 (86)
T ss_pred HHHHHhcCCccHHHHHHHHHHHhcCCCCCChhhhCCCCChhhcC
Confidence 445566533 22 26799997 899999652 36653
No 6
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=93.13 E-value=0.031 Score=41.81 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=18.7
Q ss_pred ccccccccccc------h---hHHHhhhc-----CCCCCCc
Q 046219 84 GKKVSQNRLHD------Y---SYWLQNRL-----ADGKNWQ 110 (144)
Q Consensus 84 ~~~i~~Y~~~~------~---~~~lQ~~~-----~~~~dW~ 110 (144)
.+.+++|+.++ . .|.+|+++ ++++||.
T Consensus 16 ~~~i~~Y~~~~~~~~~~~~~~~D~lQ~~fkCCG~~~y~DW~ 56 (143)
T cd03162 16 KNAMKFYKDTDTPGRCFLKKTIDMLQIEFQCCGNNGYRDWF 56 (143)
T ss_pred HHHHHHhcCCcccchhhHHHHHHHHHHhccCCCCCChhhhh
Confidence 34566676432 2 27799998 8999996
No 7
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=92.14 E-value=0.034 Score=39.40 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=17.7
Q ss_pred ccccccccc-ch---hHHHhhhc-----CCCCCCc
Q 046219 85 KKVSQNRLH-DY---SYWLQNRL-----ADGKNWQ 110 (144)
Q Consensus 85 ~~i~~Y~~~-~~---~~~lQ~~~-----~~~~dW~ 110 (144)
+.|++|+.+ +. .|.+|+++ ++|+||.
T Consensus 17 ~~i~~y~~~~~~~~~~D~iQ~~l~CCG~~~~~DW~ 51 (121)
T cd03159 17 NNIRAYRDDIDLQNLIDFLQEYWQCCGARGPDDWN 51 (121)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccCCCCCChHHhc
Confidence 455566532 22 26799997 8999996
No 8
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=92.13 E-value=0.017 Score=39.82 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=12.7
Q ss_pred HHHhhhc-----CCCCCCcc
Q 046219 97 YWLQNRL-----ADGKNWQE 111 (144)
Q Consensus 97 ~~lQ~~~-----~~~~dW~~ 111 (144)
|.+|+++ ++|+||..
T Consensus 36 d~iQ~~l~CCG~~~~~Dw~~ 55 (114)
T cd03156 36 NRVMIELKCCGVNGPTDFVD 55 (114)
T ss_pred HHHHhcccCcCCCCcHHHHh
Confidence 6799997 89999954
No 9
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=91.87 E-value=0.044 Score=37.36 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=23.9
Q ss_pred ccccccccc-ch---hHHHhhhc-----CCCCCCccC---------CcccCCccccc
Q 046219 85 KKVSQNRLH-DY---SYWLQNRL-----ADGKNWQEI---------RSCLADANVCR 123 (144)
Q Consensus 85 ~~i~~Y~~~-~~---~~~lQ~~~-----~~~~dW~~~---------~sC~~~~~~C~ 123 (144)
+.+++|..+ +. .|.+|+++ ++++||... .||+.....|.
T Consensus 17 ~~i~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~Dw~~~~~~~~~~vP~SCC~~~~~C~ 73 (104)
T cd03161 17 EAVSNYNGDDERSDAVDTVQRTLHCCGVENYTDWLNSPYFLEKGIPLSCCKNRSDCS 73 (104)
T ss_pred HHHHHhcCChhHHHHHHHHHhcCcCcCCCChhhhhccccccCCCcCcccccCCCCCC
Confidence 445566532 22 27799997 899999631 36765444564
No 10
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=91.18 E-value=0.067 Score=37.48 Aligned_cols=14 Identities=21% Similarity=0.601 Sum_probs=12.3
Q ss_pred HHHhhhc-----CCCCCCc
Q 046219 97 YWLQNRL-----ADGKNWQ 110 (144)
Q Consensus 97 ~~lQ~~~-----~~~~dW~ 110 (144)
|.+|+++ ++|+||.
T Consensus 37 d~iQ~~l~CCG~~~~~Dw~ 55 (117)
T cd03160 37 DYVQFQLQCCGWTGPQDWT 55 (117)
T ss_pred HHHHhhCcccCCCCchhHH
Confidence 6799997 7999996
No 11
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=90.95 E-value=0.079 Score=35.94 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=17.6
Q ss_pred cccccccccc-h---hHHHhhhc-----CCCCCCcc
Q 046219 85 KKVSQNRLHD-Y---SYWLQNRL-----ADGKNWQE 111 (144)
Q Consensus 85 ~~i~~Y~~~~-~---~~~lQ~~~-----~~~~dW~~ 111 (144)
+.+++|+.++ . .|.+|+++ ++|+||.+
T Consensus 17 ~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~Dw~~ 52 (99)
T cd03166 17 QMISNYNKTNDFRKILDRMQKDLKCCGANNYTDWEN 52 (99)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcccCCCChhhhhc
Confidence 3455565332 2 26799997 89999964
No 12
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=89.50 E-value=0.11 Score=36.56 Aligned_cols=14 Identities=21% Similarity=0.672 Sum_probs=12.3
Q ss_pred HHHhhhc-----CCCCCCc
Q 046219 97 YWLQNRL-----ADGKNWQ 110 (144)
Q Consensus 97 ~~lQ~~~-----~~~~dW~ 110 (144)
|.+|+++ ++++||.
T Consensus 33 d~lQ~~l~CCG~~~~~Dw~ 51 (119)
T cd03158 33 DFVQKEFKCCGGDDYRDWS 51 (119)
T ss_pred HHHHHHccCCCCCChhhcc
Confidence 6799997 8999996
No 13
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=89.40 E-value=0.11 Score=35.83 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=12.9
Q ss_pred HHHhhhc-----CCCCCCcc
Q 046219 97 YWLQNRL-----ADGKNWQE 111 (144)
Q Consensus 97 ~~lQ~~~-----~~~~dW~~ 111 (144)
|.+|+++ ++|+||..
T Consensus 36 d~iQ~~l~CCG~~~~~Dw~~ 55 (110)
T cd03155 36 DELQQEFKCCGSNNYTDWQD 55 (110)
T ss_pred HHHHHhCcCcCCCChhhhhh
Confidence 7799997 89999964
No 14
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=89.12 E-value=0.092 Score=35.41 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=12.8
Q ss_pred HHHhhhc-----CCCCCCcc
Q 046219 97 YWLQNRL-----ADGKNWQE 111 (144)
Q Consensus 97 ~~lQ~~~-----~~~~dW~~ 111 (144)
|.+|+++ ++++||..
T Consensus 35 d~~Q~~l~CCG~~~~~Dw~~ 54 (98)
T cd03165 35 DITQTEFRCCGVTNYTDWYE 54 (98)
T ss_pred HHHHHhCcCcCCCChhHHHH
Confidence 6799997 89999964
No 15
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=84.64 E-value=1.3 Score=39.36 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Q 046219 28 LLVTGLFLLIVSTLGLVGACCRTDWLLCIYLFVMLISI 65 (144)
Q Consensus 28 lI~iG~~i~iis~lGc~GA~~es~clL~~y~~~l~ii~ 65 (144)
.++.=.+.+++.++++.|-.|+|||++..|..+=++++
T Consensus 213 ~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~l 250 (526)
T KOG4433|consen 213 YVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLAL 250 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 45566778899999999999999999999987655444
No 16
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=83.84 E-value=1.7 Score=37.95 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhhhhhccchhHHHHHHHH
Q 046219 29 LVTGLFLLIVSTLGLVGACCRTDWLLCIYLFV 60 (144)
Q Consensus 29 I~iG~~i~iis~lGc~GA~~es~clL~~y~~~ 60 (144)
+++=++.+++.+++|+|..|.|||.+.++.++
T Consensus 213 l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~ 244 (418)
T cd07912 213 LGLLSLLLVICLVLLVGLARHSRCLLIVFSVC 244 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34445678899999999999999999998543
No 17
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=81.06 E-value=0.47 Score=33.65 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=12.4
Q ss_pred HHHhhhc-----CCCCCCc
Q 046219 97 YWLQNRL-----ADGKNWQ 110 (144)
Q Consensus 97 ~~lQ~~~-----~~~~dW~ 110 (144)
|++|+++ ++++||.
T Consensus 33 d~iQ~~l~CCG~~~~~Dw~ 51 (120)
T cd03167 33 DQVQLGLQCCGASSYQDWQ 51 (120)
T ss_pred HHHHHhccCCCCCChHHhc
Confidence 7799997 7999996
No 18
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=79.81 E-value=0.58 Score=30.93 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=14.7
Q ss_pred HHHhhhc-----CCCCCCccCCcc
Q 046219 97 YWLQNRL-----ADGKNWQEIRSC 115 (144)
Q Consensus 97 ~~lQ~~~-----~~~~dW~~~~sC 115 (144)
|.+|+++ +++.||.--.||
T Consensus 35 d~iQ~~l~CCG~~~~~D~~vP~SC 58 (84)
T cd03152 35 KAIHFALDCCGPTGGLEQFVTDTC 58 (84)
T ss_pred HHHHHHHcCCCCCCCcccccCCCC
Confidence 6799997 889999533467
No 19
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=77.17 E-value=0.76 Score=33.01 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=0.0
Q ss_pred ceEeeeeeeeeeeccCcchhhhhhhhHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHH
Q 046219 2 GFAAVFCSAYVQMHDGSACQKTLEMPLLVTGLFLLIVSTLGLVGACCRTDWLLCIYLFVMLISILG 67 (144)
Q Consensus 2 G~~ll~~Giw~~~~~~~~~~~~~~~~lI~iG~~i~iis~lGc~GA~~es~clL~~y~~~l~ii~l~ 67 (144)
|+..+.+|+.+....... ......|+. .|++.++.|.+|.....|.++|++..++.+-++-++.
T Consensus 10 Gi~~i~lGi~~~~~~~~~-~~~~~~piW-~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~~~ 73 (150)
T PF04103_consen 10 GILSIVLGIIALSLSSSV-LVYIGYPIW-GGIFFIISGILGIASEKKPTKCLVIASLVLSIVSALL 73 (150)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHH-HHHhcccHH-HHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence 556666676655432210 111223443 4888889999999999999999999888765554433
No 20
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=74.99 E-value=1.9 Score=30.18 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=25.6
Q ss_pred ccccccccccc---h---hHHHhhhc-----CCCCCCccC-------CcccCC-cccccc
Q 046219 84 GKKVSQNRLHD---Y---SYWLQNRL-----ADGKNWQEI-------RSCLAD-ANVCRN 124 (144)
Q Consensus 84 ~~~i~~Y~~~~---~---~~~lQ~~~-----~~~~dW~~~-------~sC~~~-~~~C~~ 124 (144)
.+.|++|+.++ . .|++|++| ++++||... .||+.+ ...|..
T Consensus 17 ~~~~~~Y~~~~~~~~~~~~D~iQ~~l~CCG~~~~~DW~~~~~~~~vP~SCC~~~~~~C~~ 76 (103)
T cd03157 17 KSRMSNFGLQRYQWLTHAWNSFQTEFKCCGVIYFTDWLEMTEMEWPPDSCCSNQYPGCAR 76 (103)
T ss_pred HHHHHHHCCCCchhHHHHHHHHHHhccCccCCChhHHhccCCCCCCCccccCCCCCCcCc
Confidence 34566776522 2 27799997 899999642 366643 345753
No 21
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=67.10 E-value=1.1 Score=28.98 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=12.1
Q ss_pred HHHhhhc-----CCCCCCc
Q 046219 97 YWLQNRL-----ADGKNWQ 110 (144)
Q Consensus 97 ~~lQ~~~-----~~~~dW~ 110 (144)
|.+|+++ ++++||.
T Consensus 33 d~iq~~l~CCG~~~~~D~~ 51 (90)
T cd03127 33 DALQSTFECCGVNGPTDYL 51 (90)
T ss_pred HHHHHhCcCcCCCChHHHc
Confidence 6799997 8999996
No 22
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=65.14 E-value=2.2 Score=36.86 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhhhhhccchhHHHHHHHH
Q 046219 33 LFLLIVSTLGLVGACCRTDWLLCIYLFV 60 (144)
Q Consensus 33 ~~i~iis~lGc~GA~~es~clL~~y~~~ 60 (144)
++.+++.++++.|..|+|||++..+.++
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~ 221 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVL 221 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeec
Confidence 4677789999999999999999766543
No 23
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.81 E-value=41 Score=25.35 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHH-HHHHHHHHHhhhheEEe
Q 046219 26 MPLLVTGLFLLIVSTLGLVGACCRTDWLLCIYLFVMLI-SILGLIAFTVFVLIVTN 80 (144)
Q Consensus 26 ~~lI~iG~~i~iis~lGc~GA~~es~clL~~y~~~l~i-i~l~el~~~i~~~v~~~ 80 (144)
...+++|+++++.|..++.-..-.-..+..+...+..+ +.++.++.|+..+..+.
T Consensus 9 i~~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~~~ 64 (191)
T PF04156_consen 9 IILIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCLLSKR 64 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34666777766666666433333222333333333333 23445555555554443
No 24
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=45.93 E-value=23 Score=20.08 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc
Q 046219 28 LLVTGLFLLIVSTLGLVGACCR 49 (144)
Q Consensus 28 lI~iG~~i~iis~lGc~GA~~e 49 (144)
-+++|.+++++++-|..-..++
T Consensus 12 Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 12 GLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 5788999999999998776643
No 25
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=44.10 E-value=96 Score=22.11 Aligned_cols=29 Identities=34% Similarity=0.644 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHh-hhhhhhccchhHHHH
Q 046219 28 LLVTGLFLLIVSTL-GLVGACCRTDWLLCI 56 (144)
Q Consensus 28 lI~iG~~i~iis~l-Gc~GA~~es~clL~~ 56 (144)
+..+|.++.+++++ +.++.+++++.+...
T Consensus 74 ~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 74 FLILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 45566666665554 778888888865555
No 26
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=33.73 E-value=56 Score=26.98 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhheE
Q 046219 52 WLLCIYLFVMLISILGLIAFTVFVLIV 78 (144)
Q Consensus 52 clL~~y~~~l~ii~l~el~~~i~~~v~ 78 (144)
-+|.+|..+|.++++.-++.+++.+-+
T Consensus 35 rcLY~fvLlL~i~ivvNLalTiWIlkV 61 (292)
T KOG3950|consen 35 RCLYTFVLLLMILIVVNLALTIWILKV 61 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888889999999999998765
No 27
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=29.96 E-value=1.1e+02 Score=28.74 Aligned_cols=28 Identities=7% Similarity=0.023 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhheE
Q 046219 51 DWLLCIYLFVMLISILGLIAFTVFVLIV 78 (144)
Q Consensus 51 ~clL~~y~~~l~ii~l~el~~~i~~~v~ 78 (144)
.|.=.+|.++|+++.+..++..+.+|+-
T Consensus 136 ~c~R~~l~~~L~~~~~~il~g~i~aF~~ 163 (806)
T PF05478_consen 136 ACRRGCLGILLLLLTLIILFGVICAFVA 163 (806)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666665
No 28
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=29.59 E-value=1.7e+02 Score=21.13 Aligned_cols=31 Identities=10% Similarity=0.483 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHH
Q 046219 25 EMPLLVTGLFLLIVSTLGLVGACCRTDWLLCIYLFV 60 (144)
Q Consensus 25 ~~~lI~iG~~i~iis~lGc~GA~~es~clL~~y~~~ 60 (144)
...++.+|.+++.+|++ ++.++.+..+|+++
T Consensus 15 al~lif~g~~vmy~gi~-----f~~~~~im~ifmll 45 (114)
T PF11023_consen 15 ALSLIFIGMIVMYIGIF-----FKASPIIMVIFMLL 45 (114)
T ss_pred HHHHHHHHHHHHhhhhh-----hcccHHHHHHHHHH
Confidence 34578889999888742 36666666655543
No 29
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=28.34 E-value=2.1e+02 Score=20.05 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=26.7
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhheEE
Q 046219 47 CCRTDWLLCIYLFVMLISILGLIAFTVFVLIVT 79 (144)
Q Consensus 47 ~~es~clL~~y~~~l~ii~l~el~~~i~~~v~~ 79 (144)
.-+...+...|+.++.+++.+-+.++++.+..+
T Consensus 51 ~s~~~pl~~~~~~~~~~v~~~~~~~avv~~~~~ 83 (237)
T PF02932_consen 51 TSYAKPLDGWYFICTMFVFSASLEFAVVVYNIH 83 (237)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhccccchhhhHHHHhhhhhhhhc
Confidence 345678889999999999988888888887773
No 30
>PF13630 SdpI: SdpI/YhfL protein family
Probab=27.53 E-value=1.6e+02 Score=18.42 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=14.4
Q ss_pred hhhhhHHHHHHHHHHHHHhh
Q 046219 23 TLEMPLLVTGLFLLIVSTLG 42 (144)
Q Consensus 23 ~~~~~lI~iG~~i~iis~lG 42 (144)
+.....+..|+++++++++.
T Consensus 29 ~~g~~~~~~Gi~~~~~~~~~ 48 (76)
T PF13630_consen 29 FAGKIFIIGGIVLLIIGIII 48 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888774
No 31
>PRK02935 hypothetical protein; Provisional
Probab=26.69 E-value=2.4e+02 Score=20.18 Aligned_cols=31 Identities=10% Similarity=0.428 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHH
Q 046219 25 EMPLLVTGLFLLIVSTLGLVGACCRTDWLLCIYLFV 60 (144)
Q Consensus 25 ~~~lI~iG~~i~iis~lGc~GA~~es~clL~~y~~~ 60 (144)
...++.+|.+++-+|++ +|+++.+..+|.++
T Consensus 16 aL~lvfiG~~vMy~Gif-----f~~~~~~m~ifm~~ 46 (110)
T PRK02935 16 ALSLVFIGFIVMYLGIF-----FRESIIIMTIFMLL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHH-----hcccHHHHHHHHHH
Confidence 44578899999988854 37777777766653
No 32
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=26.51 E-value=1.6e+02 Score=22.32 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchh-------------HHHHHHHHHHHHHHH
Q 046219 28 LLVTGLFLLIVSTLGLVGACCRTDW-------------LLCIYLFVMLISILG 67 (144)
Q Consensus 28 lI~iG~~i~iis~lGc~GA~~es~c-------------lL~~y~~~l~ii~l~ 67 (144)
+++.++++++++++-.....+..+. -...|+++++.+++.
T Consensus 35 ~~~a~i~l~ilai~q~~~~~~~~~~~~~~h~h~~~~~~~~~~y~l~~iPll~g 87 (182)
T PF09323_consen 35 LYFAAILLLILAIVQLWRWFRPKRRKEDCHDHGHSKSKKLWSYFLFLIPLLIG 87 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence 5677778888888888888777665 566677666655544
No 33
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=26.45 E-value=74 Score=20.31 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 046219 27 PLLVTGLFLLIVSTLGLV 44 (144)
Q Consensus 27 ~lI~iG~~i~iis~lGc~ 44 (144)
.+-++|+.++++|++|+.
T Consensus 35 ia~~~~iG~~i~G~iGf~ 52 (61)
T PRK09400 35 VAKVTGLGILLIGLIGFI 52 (61)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788888889999873
No 34
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=26.14 E-value=1.3e+02 Score=17.47 Aligned_cols=18 Identities=22% Similarity=0.672 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 046219 56 IYLFVMLISILGLIAFTV 73 (144)
Q Consensus 56 ~y~~~l~ii~l~el~~~i 73 (144)
+|.+.|+++|++.++.+.
T Consensus 18 ~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 18 AFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666655443
No 35
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=26.05 E-value=13 Score=22.90 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=14.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhh
Q 046219 22 KTLEMPLLVTGLFLLIVSTLG 42 (144)
Q Consensus 22 ~~~~~~lI~iG~~i~iis~lG 42 (144)
.....|.+.+|+++.+.+.++
T Consensus 22 ~i~~lP~~~~Gi~Lii~g~v~ 42 (49)
T PF11384_consen 22 RIQALPAILIGIGLIISGGVG 42 (49)
T ss_pred chhccHHHHHhHHHHhhhhhh
Confidence 345568888888887776654
No 36
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=25.77 E-value=98 Score=25.37 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=28.2
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHhhhheE
Q 046219 45 GACCRTDWLLCIYLFVMLISILGLIAFTVFVLIV 78 (144)
Q Consensus 45 GA~~es~clL~~y~~~l~ii~l~el~~~i~~~v~ 78 (144)
|-.-.++.++.++.++|+++.+.-++.+++.+-+
T Consensus 5 Gi~Gwrk~cly~~vllL~il~iiNL~LTiwIl~V 38 (264)
T PF04790_consen 5 GIYGWRKRCLYLFVLLLFILAIINLALTIWILKV 38 (264)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 4445677888899999999999999999988776
No 37
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=25.29 E-value=28 Score=26.27 Aligned_cols=7 Identities=14% Similarity=0.657 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 046219 29 LVTGLFL 35 (144)
Q Consensus 29 I~iG~~i 35 (144)
|++|+++
T Consensus 80 iivgvi~ 86 (179)
T PF13908_consen 80 IIVGVIC 86 (179)
T ss_pred eeeehhh
Confidence 4444433
No 38
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=24.86 E-value=63 Score=19.75 Aligned_cols=45 Identities=16% Similarity=0.314 Sum_probs=27.9
Q ss_pred eEeeeeeeeeeeccCcchhhhhhhhHHHHHHHHHHHHHhhhhhhhccch
Q 046219 3 FAAVFCSAYVQMHDGSACQKTLEMPLLVTGLFLLIVSTLGLVGACCRTD 51 (144)
Q Consensus 3 ~~ll~~Giw~~~~~~~~~~~~~~~~lI~iG~~i~iis~lGc~GA~~es~ 51 (144)
+..+..|+++..++. .........+|..+++-|..-...+.++++
T Consensus 4 il~iv~Gi~~l~~p~----~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~ 48 (72)
T PF03729_consen 4 ILFIVLGILLLFNPD----ASLAALAIILGIWLIISGIFQLISAFRRRK 48 (72)
T ss_pred HHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334445555554431 112233577888899999999888888544
No 39
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=24.74 E-value=1.1e+02 Score=28.72 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=35.1
Q ss_pred CceEeeeeeeeeeeccCcchhhhhhhhHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Q 046219 1 MGFAAVFCSAYVQMHDGSACQKTLEMPLLVTGLFLLIVSTLGLVGACCRTDWLLCIYLFVMLISI 65 (144)
Q Consensus 1 ~G~~ll~~Giw~~~~~~~~~~~~~~~~lI~iG~~i~iis~lGc~GA~~es~clL~~y~~~l~ii~ 65 (144)
+|+++++-|+|+..-..+- -.++.|+.+++.+++ -+|+++-.|..|..+++.-.
T Consensus 13 ~gl~l~~gg~~l~~lggs~-------yy~iagl~~l~~~~l----l~~~k~aal~lya~~~~~t~ 66 (773)
T COG4993 13 CGLALLIGGIWLVALGGSW-------YYLIAGLVLLLSAWL----LLRRKRAALWLYALVLLGTL 66 (773)
T ss_pred HHHHHhccceeEEeeCCch-------HHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHHh
Confidence 4667777788876443211 145567666666665 46889999999987765444
No 40
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=24.50 E-value=2.4e+02 Score=20.23 Aligned_cols=43 Identities=19% Similarity=0.430 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHH-HHHHH
Q 046219 27 PLLVTGLFLLIVSTLGLVGACCRTDWLLCIYLFVMLIS-ILGLI 69 (144)
Q Consensus 27 ~lI~iG~~i~iis~lGc~GA~~es~clL~~y~~~l~ii-~l~el 69 (144)
.-++.|+++.+.|+.++.....=+.-.+.+|.++..++ +++|.
T Consensus 9 ~~~~~~~~~i~~gi~~l~~~~~~~~~i~~~Y~i~fg~ll~~~E~ 52 (136)
T PF08507_consen 9 LNIIAGILLILAGILSLFNSFSFSSFILGVYCILFGLLLILAEF 52 (136)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666654111256666666665554 34554
No 41
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=23.70 E-value=1.1e+02 Score=25.12 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=22.8
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhccch
Q 046219 23 TLEMPLLVTGLFLLIVSTLGLVGACCRTD 51 (144)
Q Consensus 23 ~~~~~lI~iG~~i~iis~lGc~GA~~es~ 51 (144)
.+...++++|.++++.++++.+=.-|-.+
T Consensus 224 wLwwi~~vlG~ll~lr~~i~YikVrrm~~ 252 (262)
T KOG4812|consen 224 WLWWIFLVLGLLLFLRGFINYIKVRRMEE 252 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhHHH
Confidence 45667899999999999999876655443
No 42
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=23.06 E-value=94 Score=19.91 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 046219 26 MPLLVTGLFLLIVSTLGL 43 (144)
Q Consensus 26 ~~lI~iG~~i~iis~lGc 43 (144)
..+.++|+.++++|++|+
T Consensus 30 ~iak~t~iG~~i~G~IGf 47 (61)
T TIGR00327 30 KVAKVTGIGIIIVGIIGY 47 (61)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346778888888999986
No 43
>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).
Probab=22.92 E-value=20 Score=23.58 Aligned_cols=14 Identities=7% Similarity=-0.042 Sum_probs=11.5
Q ss_pred HHHhhhc-----CCCCCCc
Q 046219 97 YWLQNRL-----ADGKNWQ 110 (144)
Q Consensus 97 ~~lQ~~~-----~~~~dW~ 110 (144)
|.+|+.+ ++++||-
T Consensus 35 d~iQ~~l~CCG~~~~~d~~ 53 (84)
T cd03151 35 KTFHSTLDCCGKGNLTALL 53 (84)
T ss_pred HHHHHhcCCCCCCCCcchH
Confidence 6799997 7888885
No 44
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.37 E-value=3.4e+02 Score=21.87 Aligned_cols=44 Identities=27% Similarity=0.377 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 046219 27 PLLVTGLFLLIVSTLGLVGACCRTDWLLCIYLFVMLISILGLIAFTVF 74 (144)
Q Consensus 27 ~lI~iG~~i~iis~lGc~GA~~es~clL~~y~~~l~ii~l~el~~~i~ 74 (144)
+-+.+|.++..+..+-.+|-+..+ ..|++++.+++-+.++..++
T Consensus 28 ~~~ml~a~l~~~~v~v~ig~l~~~----~~~~~i~gi~~g~l~am~vl 71 (224)
T PF13829_consen 28 PWLMLGAFLGPIAVFVLIGLLFGS----WWYWLIIGILLGLLAAMIVL 71 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc----HHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666663 34555555554444444443
No 45
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=21.25 E-value=3.3e+02 Score=21.61 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHh
Q 046219 26 MPLLVTGLFLLIVSTLGLVGACCRTDWLLCIYLFVMLISILGLIAFTV 73 (144)
Q Consensus 26 ~~lI~iG~~i~iis~lGc~GA~~es~clL~~y~~~l~ii~l~el~~~i 73 (144)
.|+++ -.+=+++-++|..||.+-++-.+..|.+-.++-+..-+....
T Consensus 35 aPIl~-NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wNvfiic 81 (200)
T PF05640_consen 35 APILA-NFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWNVFIIC 81 (200)
T ss_pred HHHHH-HHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHhHHHHH
Confidence 35443 444444557899999999999999999887777666544333
No 46
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=20.15 E-value=2.5e+02 Score=24.63 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhe
Q 046219 56 IYLFVMLISILGLIAFTVFVLI 77 (144)
Q Consensus 56 ~y~~~l~ii~l~el~~~i~~~v 77 (144)
.|.+.++++.++-.++.+.+|+
T Consensus 81 c~~~sLiiltL~~~aaIi~~f~ 102 (418)
T cd07912 81 CLKWSLVIATLLCCAAIGVGLY 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444443333333444
No 47
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=20.11 E-value=1.2e+02 Score=18.86 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 046219 28 LLVTGLFLLIVSTLGLVGAC 47 (144)
Q Consensus 28 lI~iG~~i~iis~lGc~GA~ 47 (144)
+.++|+.+++-++.|+|...
T Consensus 36 ~~~~g~~ll~~g~~g~Cp~~ 55 (66)
T PF11127_consen 36 LGFVGAMLLVTGITGFCPLY 55 (66)
T ss_pred HHHHHHHHHHHHHHCcCHhH
Confidence 55677777777788777653
Done!