Query 046219
Match_columns 144
No_of_seqs 153 out of 736
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 17:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8q_A CD81 antigen, extracell 80.7 0.12 4.1E-06 33.4 -2.2 21 97-117 36-64 (90)
2 2klu_A T-cell surface glycopro 23.2 60 0.0021 20.5 2.5 17 28-44 11-27 (70)
3 1rh5_B Preprotein translocase 22.4 72 0.0025 20.3 2.9 17 27-43 37-53 (74)
4 2ww9_B Protein transport prote 20.0 85 0.0029 20.3 2.9 18 27-44 50-67 (80)
5 3mp7_B Preprotein translocase 18.5 73 0.0025 19.4 2.2 17 27-43 33-49 (61)
6 1y29_A Huwentoxin-X; A double- 17.4 24 0.00081 18.3 -0.3 10 43-52 18-27 (28)
7 2ari_A Envelope polyprotein GP 12.3 37 0.0013 19.1 -0.4 16 32-47 4-19 (39)
8 2wwb_B SEC61gamma, protein tra 11.5 1E+02 0.0035 19.2 1.5 18 27-44 36-53 (68)
9 1v54_M VIIIB, IX, cytochrome C 11.3 1.5E+02 0.0052 17.1 2.1 16 29-44 15-30 (46)
10 2pjv_A Envelope glycoprotein; 9.5 41 0.0014 18.0 -0.8 15 32-46 3-17 (31)
No 1
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=80.67 E-value=0.12 Score=33.37 Aligned_cols=21 Identities=5% Similarity=-0.081 Sum_probs=15.4
Q ss_pred HHHhhhc-----CCCCCCccC---CcccC
Q 046219 97 YWLQNRL-----ADGKNWQEI---RSCLA 117 (144)
Q Consensus 97 ~~lQ~~~-----~~~~dW~~~---~sC~~ 117 (144)
|.+|+++ ++++||... .||+.
T Consensus 36 d~iQ~~l~CCG~~~~~Dw~~~~vP~ScC~ 64 (90)
T 1g8q_A 36 KTFHETLDCCGSSTLTALTTSVLKNNLCP 64 (90)
T ss_dssp HHHHHHHTCCSCTTCGGGHHHHHHTTCSC
T ss_pred HHHHHhhcCCCCCChhhhccCCCCCCCCC
Confidence 6799997 899999631 35654
No 2
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=23.23 E-value=60 Score=20.45 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhhh
Q 046219 28 LLVTGLFLLIVSTLGLV 44 (144)
Q Consensus 28 lI~iG~~i~iis~lGc~ 44 (144)
+|++|.+.-++.|.|+|
T Consensus 11 LivlGg~~~lll~~glc 27 (70)
T 2klu_A 11 LIVLGGVAGLLLFIGLG 27 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 46788777666666653
No 3
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=22.39 E-value=72 Score=20.27 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHhhh
Q 046219 27 PLLVTGLFLLIVSTLGL 43 (144)
Q Consensus 27 ~lI~iG~~i~iis~lGc 43 (144)
..-++|+.++++|++|+
T Consensus 37 iak~~~iG~~imG~IGf 53 (74)
T 1rh5_B 37 VAKVTALGISLLGIIGY 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677888888899886
No 4
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=20.04 E-value=85 Score=20.29 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 046219 27 PLLVTGLFLLIVSTLGLV 44 (144)
Q Consensus 27 ~lI~iG~~i~iis~lGc~ 44 (144)
..-++|+-++++|++|+.
T Consensus 50 iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 50 IVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466788888889999863
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=18.54 E-value=73 Score=19.42 Aligned_cols=17 Identities=24% Similarity=0.604 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHhhh
Q 046219 27 PLLVTGLFLLIVSTLGL 43 (144)
Q Consensus 27 ~lI~iG~~i~iis~lGc 43 (144)
..-++|+.++++|++|+
T Consensus 33 iak~~~iG~~i~G~iGf 49 (61)
T 3mp7_B 33 AAKITGLGIILIGLIGM 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667777778888886
No 6
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=17.36 E-value=24 Score=18.34 Aligned_cols=10 Identities=20% Similarity=0.580 Sum_probs=8.2
Q ss_pred hhhhhccchh
Q 046219 43 LVGACCRTDW 52 (144)
Q Consensus 43 c~GA~~es~c 52 (144)
|||.+.+|+|
T Consensus 18 CCG~Cs~nkC 27 (28)
T 1y29_A 18 CCGVCSHNKC 27 (28)
T ss_dssp BSSCBSSSCB
T ss_pred cccccccCcc
Confidence 7888888877
No 7
>2ari_A Envelope polyprotein GP160; HIV, fusion, peptide, domain, membrane, micelle, viral protein; NMR {Human immunodeficiency virus 1} PDB: 2jnr_B
Probab=12.29 E-value=37 Score=19.12 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhhhhh
Q 046219 32 GLFLLIVSTLGLVGAC 47 (144)
Q Consensus 32 G~~i~iis~lGc~GA~ 47 (144)
|+..++.+|+|-.|+.
T Consensus 4 ~lg~~fLGfLgaaGst 19 (39)
T 2ari_A 4 GIGALFLGFLGAAGST 19 (39)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred eeehHHhhhhhhhhcc
Confidence 3445667777776654
No 8
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=11.48 E-value=1e+02 Score=19.22 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 046219 27 PLLVTGLFLLIVSTLGLV 44 (144)
Q Consensus 27 ~lI~iG~~i~iis~lGc~ 44 (144)
..-++|+-++++|++|+.
T Consensus 36 iak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 36 IAMATAIGFAIMGFIGFF 53 (68)
T ss_dssp HHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777778888863
No 9
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=11.31 E-value=1.5e+02 Score=17.08 Aligned_cols=16 Identities=25% Similarity=0.135 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhhh
Q 046219 29 LVTGLFLLIVSTLGLV 44 (144)
Q Consensus 29 I~iG~~i~iis~lGc~ 44 (144)
.++|+.+++++|++=-
T Consensus 15 ~aigl~v~f~~~L~Pa 30 (46)
T 1v54_M 15 QAIGLSVTFLSFLLPA 30 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhH
Confidence 3457777777777643
No 10
>2pjv_A Envelope glycoprotein; HIV, GP41, fusion, peptide, domain, membrane, DPC, viral protein; NMR {Human immunodeficiency virus 1}
Probab=9.51 E-value=41 Score=17.97 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhhhhh
Q 046219 32 GLFLLIVSTLGLVGA 46 (144)
Q Consensus 32 G~~i~iis~lGc~GA 46 (144)
|+-+++++|+|--|+
T Consensus 3 ~lGa~FLGFLgaAGS 17 (31)
T 2pjv_A 3 GIGALFLGFLGAAGS 17 (31)
T ss_dssp SHHHHHHTHHHHTCC
T ss_pred hhhhHHHHHhhcccc
Confidence 344555666665543
Done!