Query 046219
Match_columns 144
No_of_seqs 153 out of 736
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 17:12:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046219.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046219hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 23.1 29 0.0021 19.6 2.5 18 26-43 25-42 (56)
2 d1y29a_ g.3.6.2 (A:) Huwentoxi 20.3 8.6 0.00063 18.5 -0.3 11 42-52 17-27 (28)
3 d1v54m_ f.23.7.1 (M:) Mitochon 10.5 99 0.0072 16.3 2.5 17 29-45 15-31 (43)
4 d2pgga1 e.8.1.4 (A:31-804) Vir 8.7 63 0.0046 26.6 1.6 29 114-142 439-467 (774)
5 d1op0a_ b.47.1.2 (A:) Venom se 7.1 79 0.0058 20.6 1.4 19 92-110 213-231 (234)
6 d1xmeb2 f.17.2.1 (B:3-36) Bact 6.0 1.8E+02 0.013 13.9 3.1 14 57-70 19-32 (34)
7 d1xrda1 f.3.1.1 (A:1-52) Light 5.8 2E+02 0.014 15.6 2.4 13 28-40 14-26 (52)
8 d1sgfa_ b.47.1.2 (A:) 7S NGF p 5.2 1.2E+02 0.0088 19.4 1.4 12 93-104 214-225 (228)
9 d2bs2c1 f.21.2.1 (C:1-254) Fum 4.1 4.8E+02 0.035 17.9 4.3 13 35-47 176-188 (254)
10 d1oedc_ f.36.1.1 (C:) Acetylch 4.0 5.3E+02 0.038 16.7 4.6 46 33-78 43-88 (260)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=23.14 E-value=29 Score=19.57 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 046219 26 MPLLVTGLFLLIVSTLGL 43 (144)
Q Consensus 26 ~~lI~iG~~i~iis~lGc 43 (144)
....+.|+-++++|++|+
T Consensus 25 ~ia~v~~iG~~i~G~IGf 42 (56)
T d1rh5b_ 25 AVAKVTALGISLLGIIGY 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346778888888999986
No 2
>d1y29a_ g.3.6.2 (A:) Huwentoxin-X {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=20.32 E-value=8.6 Score=18.45 Aligned_cols=11 Identities=18% Similarity=0.479 Sum_probs=8.2
Q ss_pred hhhhhhccchh
Q 046219 42 GLVGACCRTDW 52 (144)
Q Consensus 42 Gc~GA~~es~c 52 (144)
-|||.+..|+|
T Consensus 17 pccgvcshnkc 27 (28)
T d1y29a_ 17 PCCGVCSHNKC 27 (28)
T ss_dssp CBSSCBSSSCB
T ss_pred cceeeeccccc
Confidence 37888888776
No 3
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.50 E-value=99 Score=16.27 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhhhh
Q 046219 29 LVTGLFLLIVSTLGLVG 45 (144)
Q Consensus 29 I~iG~~i~iis~lGc~G 45 (144)
.++|..+++++|++=-|
T Consensus 15 ~aigLt~~f~~~L~PaG 31 (43)
T d1v54m_ 15 QAIGLSVTFLSFLLPAG 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHH
Confidence 67888888899887655
No 4
>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious bursal disease virus [TaxId: 10995]}
Probab=8.66 E-value=63 Score=26.65 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=20.3
Q ss_pred cccCCcccccccCCCCCCchhHHHhhhhc
Q 046219 114 SCLADANVCRNLGNKDLKDWSLVQEHVLK 142 (144)
Q Consensus 114 sC~~~~~~C~~~~~~~~~~~~~~~~~~~~ 142 (144)
||.--...=...++++-|||+|+.+|+|.
T Consensus 439 scllmNlQ~kt~GQGSGNawTFLnNHllS 467 (774)
T d2pgga1 439 SCLIMNLQIKTYGQGSGNAATFINNHLLS 467 (774)
T ss_dssp EEEEBTEEEECCSBCTTSTTHHHHHHHHH
T ss_pred hHhhhhccccCCCCCCCchHHHHHHHHHH
Confidence 46433333345667788999999999984
No 5
>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}
Probab=7.10 E-value=79 Score=20.60 Aligned_cols=19 Identities=26% Similarity=0.660 Sum_probs=13.8
Q ss_pred ccchhHHHhhhcCCCCCCc
Q 046219 92 LHDYSYWLQNRLADGKNWQ 110 (144)
Q Consensus 92 ~~~~~~~lQ~~~~~~~dW~ 110 (144)
...|.+|+++++.+.+||.
T Consensus 213 v~~y~~WI~~~i~~~~~~~ 231 (234)
T d1op0a_ 213 VFDYTDWIQRNIAGNTDAT 231 (234)
T ss_dssp SGGGHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHhhcCCCC
Confidence 3456799999997666653
No 6
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=5.98 E-value=1.8e+02 Score=13.94 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 046219 57 YLFVMLISILGLIA 70 (144)
Q Consensus 57 y~~~l~ii~l~el~ 70 (144)
|...|+.+|++.++
T Consensus 19 fslamlfvfialia 32 (34)
T d1xmeb2 19 FSLAMLFVFIALIA 32 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 44455555555443
No 7
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=5.76 E-value=2e+02 Score=15.59 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q 046219 28 LLVTGLFLLIVST 40 (144)
Q Consensus 28 lI~iG~~i~iis~ 40 (144)
+++.+++++++++
T Consensus 14 lva~~~fL~~LAl 26 (52)
T d1xrda1 14 LVGLATFLFVLAL 26 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6667777666654
No 8
>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.18 E-value=1.2e+02 Score=19.43 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=8.6
Q ss_pred cchhHHHhhhcC
Q 046219 93 HDYSYWLQNRLA 104 (144)
Q Consensus 93 ~~~~~~lQ~~~~ 104 (144)
..|.+|+++.+.
T Consensus 214 ~~~~~WI~~~i~ 225 (228)
T d1sgfa_ 214 IKFSSWIRETMA 225 (228)
T ss_dssp GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 345689998873
No 9
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=4.11 E-value=4.8e+02 Score=17.86 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=6.8
Q ss_pred HHHHHHhhhhhhh
Q 046219 35 LLIVSTLGLVGAC 47 (144)
Q Consensus 35 i~iis~lGc~GA~ 47 (144)
++.+.+=|+.|.+
T Consensus 176 l~av~lH~~~Gl~ 188 (254)
T d2bs2c1 176 LFAVELHGSVGLY 188 (254)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHH
Confidence 3445555566654
No 10
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.95 E-value=5.3e+02 Score=16.69 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhhhheE
Q 046219 33 LFLLIVSTLGLVGACCRTDWLLCIYLFVMLISILGLIAFTVFVLIV 78 (144)
Q Consensus 33 ~~i~iis~lGc~GA~~es~clL~~y~~~l~ii~l~el~~~i~~~v~ 78 (144)
..++...+-.-.=...+..-++..|+.+.++++.+-++.+++..-+
T Consensus 43 ~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~~~t~~Vl~~ 88 (260)
T d1oedc_ 43 QAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIVNCGIVLNF 88 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhheee
Confidence 3333333333333344455667677776666666655555555444
Done!